Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 82679320
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4050000 characters in sequence are not A, C, G, or T
File 52 of 255
Found at i:14640291 original size:107 final size:108
Alignment explanation
Indices: 14640110--14640309 Score: 298
Period size: 107 Copynumber: 1.9 Consensus size: 108
14640100 AGTAGTTTGG
* *
14640110 TAATTTTACAAATCGAGGGTGTTTCAGTAATTTTAAAAATTGAGGGTATTTCGGTAATTTCACAA
1 TAATTTTACAAATCGAGGGTGTTTCAGTAATTTTAAAAATTGAGGATATTTCGATAATTTCACAA
* *
14640175 ATCGAGGGTATTTCGGTAATTTTACAAATCGAGGGCATTCCAA
66 AGCGAGGGTACTTCGGTAATTTTACAAATCGAGGGCATTCCAA
* *
14640218 TAATTTTAC-AATCGAGGGTGTTTCAGTAATTTTACAAATCT-AGGATATTTCGATAATTTTAC-
1 TAATTTTACAAATCGAGGGTGTTTCAGTAATTTTAAAAAT-TGAGGATATTTCGATAATTTCACA
*
14640280 AAGCAGGGGGTACTTCGGTAATTTTACAAA
65 AAGC-GAGGGTACTTCGGTAATTTTACAAA
14640310 CCAGGGGTAT
Statistics
Matches: 83, Mismatches: 7, Indels: 5
0.87 0.07 0.05
Matches are distributed among these distances:
106 3 0.04
107 70 0.84
108 10 0.12
ACGTcount: A:0.33, C:0.12, G:0.20, T:0.36
Consensus pattern (108 bp):
TAATTTTACAAATCGAGGGTGTTTCAGTAATTTTAAAAATTGAGGATATTTCGATAATTTCACAA
AGCGAGGGTACTTCGGTAATTTTACAAATCGAGGGCATTCCAA
Found at i:14640680 original size:28 final size:28
Alignment explanation
Indices: 14640647--14640710 Score: 83
Period size: 28 Copynumber: 2.3 Consensus size: 28
14640637 TGGCCCCTTT
* *
14640647 AGGCCCAATCTCGTTCACATGGCCCATC
1 AGGCCCAATCACATTCACATGGCCCATC
* * *
14640675 AGGCCCAGTCACATTCATATGGCGCATC
1 AGGCCCAATCACATTCACATGGCCCATC
14640703 AGGCCCAA
1 AGGCCCAA
14640711 CTACTTCCCA
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.25, C:0.36, G:0.20, T:0.19
Consensus pattern (28 bp):
AGGCCCAATCACATTCACATGGCCCATC
Found at i:14642765 original size:47 final size:47
Alignment explanation
Indices: 14642696--14642817 Score: 208
Period size: 47 Copynumber: 2.6 Consensus size: 47
14642686 CCCATAAGCA
*
14642696 AACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCACG
1 AACTCGGACTCAACTCAACGAGCTCGGATACCTAGTTACATCTCACG
**
14642743 AACTCGGACTCAACTCAACGAGCTCAAATACCTAGTTACATCTCACG
1 AACTCGGACTCAACTCAACGAGCTCGGATACCTAGTTACATCTCACG
*
14642790 AACTCGGACTCAACTCAACGAGTTCGGA
1 AACTCGGACTCAACTCAACGAGCTCGGA
14642818 CATTCGCATC
Statistics
Matches: 69, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 69 1.00
ACGTcount: A:0.31, C:0.31, G:0.17, T:0.20
Consensus pattern (47 bp):
AACTCGGACTCAACTCAACGAGCTCGGATACCTAGTTACATCTCACG
Found at i:14642882 original size:46 final size:46
Alignment explanation
Indices: 14642696--14642869 Score: 174
Period size: 47 Copynumber: 3.7 Consensus size: 46
14642686 CCCATAAGCA
*
14642696 AACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCACG
1 AACTCGGACTCAACTCAACGAGCTCGGATGCCCAG-TACATCTCACG
** * *
14642743 AACTCGGACTCAACTCAACGAGCTCAAATACCTAGTTACATCTCACG
1 AACTCGGACTCAACTCAACGAGCTCGGATGCCCAG-TACATCTCACG
* * * * * *
14642790 AACTCGGACTCAACTCAACGAGTTCGGACATTCGCA-TCCA--TAAGTG
1 AACTCGGACTCAACTCAACGAGCTCGG--ATGCCCAGTACATCTCA-CG
*
14642836 AACTCGGACTCAACTCAACGAGTTCGGATGCCCA
1 AACTCGGACTCAACTCAACGAGCTCGGATGCCCA
14642870 AACATCCTAG
Statistics
Matches: 110, Mismatches: 14, Indels: 9
0.83 0.11 0.07
Matches are distributed among these distances:
44 5 0.05
45 2 0.02
46 28 0.25
47 71 0.65
49 4 0.04
ACGTcount: A:0.30, C:0.31, G:0.18, T:0.21
Consensus pattern (46 bp):
AACTCGGACTCAACTCAACGAGCTCGGATGCCCAGTACATCTCACG
Found at i:14644391 original size:50 final size:49
Alignment explanation
Indices: 14644321--14644593 Score: 275
Period size: 50 Copynumber: 5.6 Consensus size: 49
14644311 ACATCAAAGT
* * * *
14644321 CGATGCCATGTTCCAAACATGGTCTTACATTGACTCTCGTATATCGAGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACT-ACTCTCATATATCGAGGC
* * * * * *
14644371 CAATTCCATGTCCCAGACATGGTCTTACATTGGCTCTCATCTATCGATGC
1 CGATGCCATGTCCCAGACATGGTCTTACACT-ACTCTCATATATCGAGGC
* * * * * *
14644421 CGATGCCATGTCCTAGACATGGTCCTACACTA---ACACATATC-AAGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTACTCTCATATATCGAGGC
* *
14644466 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTTATATCTCGAGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTA-CTCTCATATATCGAGGC
* * * * *
14644516 TGATGCCATGTCCCAGTCATGGTCTTACACTAGCTGTCATATCTCGAGGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTA-CTCTCATATATCGAGGC
14644566 CGATGCCATGTCCCAGACATGGTCTTAC
1 CGATGCCATGTCCCAGACATGGTCTTAC
14644594 TGTAACATCC
Statistics
Matches: 184, Mismatches: 34, Indels: 10
0.81 0.15 0.04
Matches are distributed among these distances:
45 32 0.17
46 6 0.03
49 5 0.03
50 141 0.77
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.29
Consensus pattern (49 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTACTCTCATATATCGAGGC
Found at i:14644489 original size:95 final size:98
Alignment explanation
Indices: 14644376--14644593 Score: 280
Period size: 95 Copynumber: 2.2 Consensus size: 98
14644366 GAGGCCAATT
* * * * *
14644376 CCATGTCCCAGACATGGTCTTACATTGGCTCTCATCTATCGATGCCGATGCCATGTCCTAGACAT
1 CCATGTCCCAGACATGGTCTTACACTAGCTCTCATATATCGAGGCCGATGCCATGTCCCAGACAT
14644441 GGTCCTACACTAAC-ACATA-TC-AAGTCGATG
66 GGTCCTACACTAACGACATACTCGAAGTCGATG
* * * *
14644471 CCATGTCCCAGACATGGTCTTACACTAGCTCTTATATCTCGAGGCTGATGCCATGTCCCAGTCAT
1 CCATGTCCCAGACATGGTCTTACACTAGCTCTCATATATCGAGGCCGATGCCATGTCCCAGACAT
* * * *
14644536 GGTCTTACACTAGCTGTCATATCTCGAGGTCGATG
66 GGTCCTACACTAAC-GACATA-CTCGAAGTCGATG
14644571 CCATGTCCCAGACATGGTCTTAC
1 CCATGTCCCAGACATGGTCTTAC
14644594 TGTAACATCC
Statistics
Matches: 105, Mismatches: 13, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
95 68 0.65
97 4 0.04
99 2 0.02
100 31 0.30
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.28
Consensus pattern (98 bp):
CCATGTCCCAGACATGGTCTTACACTAGCTCTCATATATCGAGGCCGATGCCATGTCCCAGACAT
GGTCCTACACTAACGACATACTCGAAGTCGATG
Found at i:14644600 original size:145 final size:146
Alignment explanation
Indices: 14644308--14644589 Score: 370
Period size: 145 Copynumber: 1.9 Consensus size: 146
14644298 TACATTGGCT
* * *
14644308 CACACATCAAAGTCGATGCCATGTTCCAAACATGGTCTTACATTGACTCTCGTATATCGAGGCCA
1 CACACATCAAAGTCGATGCCATGTCCCAAACATGGTCTTACATAGACTCTCATATATCGAGGCCA
* * * * * *
14644373 ATTCCATGTCCCAGACATGGTCTTACATTGGCTCTCATCTATCGATGCCGATGCCATGTCCTAGA
66 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATATCGAGGCCGATGCCATGTCCCAGA
14644438 CATGGTCCTACACTAA
131 CATGGTCCTACACTAA
* * * * *
14644454 CACATATC-AAGTCGATGCCATGTCCCAGACATGGTCTTACACTAG-CTCTTATATCTCGAGGCT
1 CACACATCAAAGTCGATGCCATGTCCCAAACATGGTCTTACA-TAGACTCTCATATATCGAGGCC
* * * * *
14644517 GATGCCATGTCCCAGTCATGGTCTTACACTAGCTGTCATATCTCGAGGTCGATGCCATGTCCCAG
65 AATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATATCGAGGCCGATGCCATGTCCCAG
14644582 ACATGGTC
130 ACATGGTC
14644590 TTACTGTAAC
Statistics
Matches: 116, Mismatches: 19, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
145 107 0.92
146 9 0.08
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (146 bp):
CACACATCAAAGTCGATGCCATGTCCCAAACATGGTCTTACATAGACTCTCATATATCGAGGCCA
ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATATCGAGGCCGATGCCATGTCCCAGA
CATGGTCCTACACTAA
Found at i:14645660 original size:27 final size:27
Alignment explanation
Indices: 14645630--14645788 Score: 194
Period size: 27 Copynumber: 5.9 Consensus size: 27
14645620 ATTACCAACG
* * *
14645630 TACCCCCGATTTGTAGAATTACTGTTT
1 TACCCTCGATTTATAGAATTACTATTT
14645657 TACCCTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTATAGAATTACTATTT
* * * *
14645684 TACCCTAGAATTACAGAATTA-TCGTTT
1 TACCCTCGATTTATAGAATTACT-ATTT
14645711 TACCCTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTATAGAATTACTATTT
* * *
14645738 TACCCTTGATTTACAAAATTACTATTT
1 TACCCTCGATTTATAGAATTACTATTT
* *
14645765 TACCCTCGATTTACAAAATTACTA
1 TACCCTCGATTTATAGAATTACTA
14645789 AAATACCCTT
Statistics
Matches: 115, Mismatches: 15, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
26 1 0.01
27 113 0.98
28 1 0.01
ACGTcount: A:0.31, C:0.20, G:0.08, T:0.41
Consensus pattern (27 bp):
TACCCTCGATTTATAGAATTACTATTT
Found at i:14645728 original size:81 final size:81
Alignment explanation
Indices: 14645630--14645785 Score: 231
Period size: 81 Copynumber: 1.9 Consensus size: 81
14645620 ATTACCAACG
* * * *
14645630 TACCCCCGATTTGTAGAATTACTGTTTTACCCTCGATTTATAGAATTACTATTTTACCCTAGAAT
1 TACCCCCGATTTATAGAATTACTATTTTACCCTCGATTTACAAAATTACTATTTTACCCTAGAAT
*
14645695 TACAGAATTATCGTTT
66 TACAAAATTATCGTTT
* * * *
14645711 TACCCTCGATTTATAGAATTACTATTTTACCCTTGATTTACAAAATTACTATTTTACCCTCGATT
1 TACCCCCGATTTATAGAATTACTATTTTACCCTCGATTTACAAAATTACTATTTTACCCTAGAAT
14645776 TACAAAATTA
66 TACAAAATTA
14645786 CTAAAATACC
Statistics
Matches: 66, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
81 66 1.00
ACGTcount: A:0.31, C:0.20, G:0.08, T:0.41
Consensus pattern (81 bp):
TACCCCCGATTTATAGAATTACTATTTTACCCTCGATTTACAAAATTACTATTTTACCCTAGAAT
TACAAAATTATCGTTT
Found at i:14645795 original size:27 final size:27
Alignment explanation
Indices: 14645711--14646012 Score: 186
Period size: 27 Copynumber: 11.2 Consensus size: 27
14645701 ATTATCGTTT
* * * ***
14645711 TACCCTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACCAAAA
* * ***
14645738 TACCCTTGATTTACAAAATTACTATTT
1 TACCCTCGATTTACAAAATTACCAAAA
*
14645765 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTCGATTTACAAAATTACCAAAA
* *
14645792 TACCCTTGGTTTACAAAATTACCAAAA
1 TACCCTCGATTTACAAAATTACCAAAA
* *
14645819 TACCCTCGA-TCAGTAAAATTACCAAAA
1 TACCCTCGATTTA-CAAAATTACCAAAA
* ** *
14645846 TACCCT-GGTTTGTAAAATTACTAAAA
1 TACCCTCGATTTACAAAATTACCAAAA
* * **
14645872 TACCCTTGGTTTGTAAAATTACCAAAA
1 TACCCTCGATTTACAAAATTACCAAAA
* ** *
14645899 TACCC-CTAGTTTGTAAAGTTACCAAAA
1 TACCCTCGA-TTTACAAAATTACCAAAA
* * *** *
14645926 TACCAAT-GGTTTGTGAAATTACCGAAA
1 TACC-CTCGATTTACAAAATTACCAAAA
*
14645953 TACCCTCAATTT-CTAAAATTACCAAAA
1 TACCCTCGATTTAC-AAAATTACCAAAA
14645980 TACCC-CTGATTTACAAAATTA-CAGAAA
1 TACCCTC-GATTTACAAAATTACCA-AAA
14646007 TACCCT
1 TACCCT
14646013 TGACTTTCCA
Statistics
Matches: 227, Mismatches: 36, Indels: 23
0.79 0.13 0.08
Matches are distributed among these distances:
26 26 0.11
27 200 0.88
28 1 0.00
ACGTcount: A:0.39, C:0.21, G:0.08, T:0.32
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACCAAAA
Found at i:14645796 original size:54 final size:54
Alignment explanation
Indices: 14645646--14645813 Score: 230
Period size: 54 Copynumber: 3.1 Consensus size: 54
14645636 CGATTTGTAG
* * *
14645646 AATTACTGTTTTACCCTCGATTTATAGAATTACTATTTTACCCTAGAATTACAG
1 AATTACTGTTTTACCCTCGATTTATAGAATTACTATTTTACCCTTGATTTACAA
14645700 AATTA-TCGTTTTACCCTCGATTTATAGAATTACTATTTTACCCTTGATTTACAA
1 AATTACT-GTTTTACCCTCGATTTATAGAATTACTATTTTACCCTTGATTTACAA
* * * *** *
14645754 AATTACTATTTTACCCTCGATTTACAAAATTACTAAAATACCCTTGGTTTACAA
1 AATTACTGTTTTACCCTCGATTTATAGAATTACTATTTTACCCTTGATTTACAA
14645808 AATTAC
1 AATTAC
14645814 CAAAATACCC
Statistics
Matches: 102, Mismatches: 10, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
53 1 0.01
54 100 0.98
55 1 0.01
ACGTcount: A:0.33, C:0.19, G:0.07, T:0.40
Consensus pattern (54 bp):
AATTACTGTTTTACCCTCGATTTATAGAATTACTATTTTACCCTTGATTTACAA
Found at i:14645796 original size:81 final size:81
Alignment explanation
Indices: 14645603--14645797 Score: 205
Period size: 81 Copynumber: 2.4 Consensus size: 81
14645593 ATTATTGAAA
* ** * ** * * *
14645603 TACCCTCGACTTGTAAAATTACCAACGTACCCCCGATTTGTAGAATTACTGTTTTACCCTCGATT
1 TACCCTCGAATTACAAAATTACTAAAATACCCTCGATTTATAGAATTACTATTTTACCCTCGATT
* *
14645668 TATAGAATTACTATTT
66 TACAAAATTACTATTT
* * ** *
14645684 TACCCTAGAATTACAGAATTATCGT--TTTACCCTCGATTTATAGAATTACTATTTTACCCTTGA
1 TACCCTCGAATTACAAAATTA-C-TAAAATACCCTCGATTTATAGAATTACTATTTTACCCTCGA
14645747 TTTACAAAATTACTATTT
64 TTTACAAAATTACTATTT
*
14645765 TACCCTCGATTTACAAAATTACTAAAATACCCT
1 TACCCTCGAATTACAAAATTACTAAAATACCCT
14645798 TGGTTTACAA
Statistics
Matches: 91, Mismatches: 19, Indels: 8
0.77 0.16 0.07
Matches are distributed among these distances:
79 1 0.01
80 1 0.01
81 88 0.97
82 1 0.01
ACGTcount: A:0.32, C:0.22, G:0.08, T:0.38
Consensus pattern (81 bp):
TACCCTCGAATTACAAAATTACTAAAATACCCTCGATTTATAGAATTACTATTTTACCCTCGATT
TACAAAATTACTATTT
Found at i:14645823 original size:54 final size:54
Alignment explanation
Indices: 14645711--14646014 Score: 224
Period size: 54 Copynumber: 5.6 Consensus size: 54
14645701 ATTATCGTTT
* * *** * * ***
14645711 TACCCTCGATTTATAGAATTACTATTTTACCCTTGATTTACAAAATTACTATTT
1 TACCCTCGATTTATAAAATTACCAAAATACCCTTGGTTTACAAAATTACCAAAA
* *
14645765 TACCCTCGATTTACAAAATTACTAAAATACCCTTGGTTTACAAAATTACCAAAA
1 TACCCTCGATTTATAAAATTACCAAAATACCCTTGGTTTACAAAATTACCAAAA
* ** *
14645819 TACCCTCGA-TCAGTAAAATTACCAAAATACCC-TGGTTTGTAAAATTACTAAAA
1 TACCCTCGATTTA-TAAAATTACCAAAATACCCTTGGTTTACAAAATTACCAAAA
* * * * * ** *
14645872 TACCCTTGGTTTGTAAAATTACCAAAATACCCCTAGTTTGTAAAGTTACCAAAA
1 TACCCTCGATTTATAAAATTACCAAAATACCCTTGGTTTACAAAATTACCAAAA
* * * * * ***
14645926 TACCAAT-GGTTTGTGAAATTACCGAAATACCCTCAATTT-CTAAAATTACCAAAA
1 TACC-CTCGATTTATAAAATTACCAAAATACCCTTGGTTTAC-AAAATTACCAAAA
*
14645980 TACCC-CTGATTTACAAAATTA-CAGAAATACCCTTG
1 TACCCTC-GATTTATAAAATTACCA-AAATACCCTTG
14646015 ACTTTCCAAA
Statistics
Matches: 203, Mismatches: 39, Indels: 16
0.79 0.15 0.06
Matches are distributed among these distances:
53 47 0.23
54 155 0.76
55 1 0.00
ACGTcount: A:0.38, C:0.21, G:0.08, T:0.32
Consensus pattern (54 bp):
TACCCTCGATTTATAAAATTACCAAAATACCCTTGGTTTACAAAATTACCAAAA
Found at i:14645890 original size:80 final size:81
Alignment explanation
Indices: 14645779--14645985 Score: 265
Period size: 80 Copynumber: 2.6 Consensus size: 81
14645769 CTCGATTTAC
*
14645779 AAAATTACTAAAATACCCTTGGTTTACAAAATTACCAAAATACCCTCGA-TCAGTAAAATTACCA
1 AAAATTACTAAAATACCCTTGGTTTATAAAATTACCAAAATACCC-CGAGTCAGTAAAATTACCA
*
14645843 AAATACC-CTGGTTTGT
65 AAATACCAATGGTTTGT
* * ** *
14645859 AAAATTACTAAAATACCCTTGGTTTGTAAAATTACCAAAATACCCCTAGTTTGTAAAGTTACCAA
1 AAAATTACTAAAATACCCTTGGTTTATAAAATTACCAAAATACCCCGAGTCAGTAAAATTACCAA
14645924 AATACCAATGGTTTGT
66 AATACCAATGGTTTGT
* ** *** *
14645940 GAAATTACCGAAATACCCTCAATTTCTAAAATTACCAAAATACCCC
1 AAAATTACTAAAATACCCTTGGTTTATAAAATTACCAAAATACCCC
14645986 TGATTTACAA
Statistics
Matches: 111, Mismatches: 14, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
79 2 0.02
80 62 0.56
81 47 0.42
ACGTcount: A:0.41, C:0.21, G:0.09, T:0.29
Consensus pattern (81 bp):
AAAATTACTAAAATACCCTTGGTTTATAAAATTACCAAAATACCCCGAGTCAGTAAAATTACCAA
AATACCAATGGTTTGT
Found at i:14646008 original size:81 final size:80
Alignment explanation
Indices: 14645779--14646010 Score: 231
Period size: 81 Copynumber: 2.9 Consensus size: 80
14645769 CTCGATTTAC
* *** *
14645779 AAAATTACTAAAATACCCTTGGTTTAC-AAAATTACCAAAATA-CCCTCGA-TCAGTAAAATTAC
1 AAAATTACCAAAATACCCTCAATTT-CTAAAATTACCAAAATACCCCT-GATTTA-TAAAATTAC
*
14645841 CAAAATACCCTGGTTTGT
63 CAAAATACCATGGTTTGT
* *** * * *
14645859 AAAATTACTAAAATACCCTTGGTTTGTAAAATTACCAAAATACCCCT-AGTTTGTAAAGTTACCA
1 AAAATTACCAAAATACCCTCAATTTCTAAAATTACCAAAATACCCCTGA-TTTATAAAATTACCA
14645923 AAATACCAATGGTTTGT
65 AAATACC-ATGGTTTGT
* * *
14645940 GAAATTACCGAAATACCCTCAATTTCTAAAATTACCAAAATACCCCTGATTTACAAAATTA-CAG
1 AAAATTACCAAAATACCCTCAATTTCTAAAATTACCAAAATACCCCTGATTTATAAAATTACCA-
14646004 AAATACC
65 AAATACC
14646011 CTTGACTTTC
Statistics
Matches: 130, Mismatches: 15, Indels: 13
0.82 0.09 0.08
Matches are distributed among these distances:
79 1 0.01
80 59 0.45
81 69 0.53
82 1 0.01
ACGTcount: A:0.42, C:0.21, G:0.09, T:0.29
Consensus pattern (80 bp):
AAAATTACCAAAATACCCTCAATTTCTAAAATTACCAAAATACCCCTGATTTATAAAATTACCAA
AATACCATGGTTTGT
Found at i:14646034 original size:29 final size:27
Alignment explanation
Indices: 14645767--14646067 Score: 106
Period size: 27 Copynumber: 11.1 Consensus size: 27
14645757 TACTATTTTA
14645767 CCCTCGATTTACAAAATTACTA-AAATAC
1 CCCT-GATTTACAAAATTAC-AGAAATAC
* *
14645795 CCTTGGTTTACAAAATTACCA-AAATA-
1 CCCTGATTTACAAAATTA-CAGAAATAC
* *
14645821 CCCTCGA-TCAGTAAAATTACCA-AAATA-
1 CCCT-GATTTA-CAAAATTA-CAGAAATAC
* **
14645848 CCCTGGTTTGTAAAATTACTA-AAATAC
1 CCCTGATTTACAAAATTAC-AGAAATAC
* * **
14645875 CCTTGGTTTGTAAAATTACCA-AAATAC
1 CCCTGATTTACAAAATTA-CAGAAATAC
** *
14645902 CCCT-AGTTTGTAAAGTTACCA-AAATAC
1 CCCTGA-TTTACAAAATTA-CAGAAATAC
** * *** *
14645929 CAATGGTTTGTGAAATTACCGAAATA-
1 CCCTGATTTACAAAATTACAGAAATAC
*
14645955 CCCTCAATTT-CTAAAATTACCA-AAATAC
1 CCCT-GATTTAC-AAAATTA-CAGAAATAC
14645983 CCCTGATTTACAAAATTACAGAAATAC
1 CCCTGATTTACAAAATTACAGAAATAC
* * *
14646010 CCTTGACTTTCCAAAAATTATAGAAATAC
1 CCCTGA-TTTAC-AAAATTACAGAAATAC
** * * *
14646039 CATTGGTGTACAAAATTACTGAAATAC
1 CCCTGATTTACAAAATTACAGAAATAC
14646066 CC
1 CC
14646068 TTGGTTTGTA
Statistics
Matches: 218, Mismatches: 37, Indels: 37
0.75 0.13 0.13
Matches are distributed among these distances:
25 1 0.00
26 25 0.11
27 155 0.71
28 18 0.08
29 19 0.09
ACGTcount: A:0.41, C:0.21, G:0.09, T:0.29
Consensus pattern (27 bp):
CCCTGATTTACAAAATTACAGAAATAC
Found at i:14646230 original size:27 final size:28
Alignment explanation
Indices: 14646092--14646231 Score: 114
Period size: 27 Copynumber: 5.2 Consensus size: 28
14646082 TACCAAAACA
* ** *
14646092 CCCTTGTAGGGTGAAATGACTAAAATAC
1 CCCTTGTAGGGTAAAATGACTGTAATAG
* *
14646120 CCCTAT-TA-GGTAAAAAGACTATAA-AG
1 CCCT-TGTAGGGTAAAATGACTGTAATAG
* * *
14646146 CCCCTGTAGGGTAAAGTGACCGTAA-AG
1 CCCTTGTAGGGTAAAATGACTGTAATAG
*
14646173 CCCTTGTAGGGTAAAGTGACTGTAATA-
1 CCCTTGTAGGGTAAAATGACTGTAATAG
*
14646200 CCCTTGTATGGTAAAATGAC-G-AATATG
1 CCCTTGTAGGGTAAAATGACTGTAATA-G
14646227 CCCTT
1 CCCTT
14646232 ATGTTCCGTA
Statistics
Matches: 93, Mismatches: 13, Indels: 13
0.78 0.11 0.11
Matches are distributed among these distances:
25 5 0.05
26 7 0.08
27 73 0.78
28 7 0.08
29 1 0.01
ACGTcount: A:0.34, C:0.19, G:0.22, T:0.26
Consensus pattern (28 bp):
CCCTTGTAGGGTAAAATGACTGTAATAG
Found at i:14647049 original size:26 final size:24
Alignment explanation
Indices: 14647020--14647071 Score: 86
Period size: 26 Copynumber: 2.1 Consensus size: 24
14647010 GAGGAAGTGC
14647020 AAAAGGGCTTATGCCCCAGTTTATTA
1 AAAAGGGCTT-TGCCCCAG-TTATTA
14647046 AAAAGGGCTTTGCCCCAGTTATTA
1 AAAAGGGCTTTGCCCCAGTTATTA
14647070 AA
1 AA
14647072 GAGGCTAGGC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
24 8 0.31
25 8 0.31
26 10 0.38
ACGTcount: A:0.33, C:0.19, G:0.19, T:0.29
Consensus pattern (24 bp):
AAAAGGGCTTTGCCCCAGTTATTA
Found at i:14647322 original size:31 final size:31
Alignment explanation
Indices: 14647284--14647388 Score: 174
Period size: 31 Copynumber: 3.4 Consensus size: 31
14647274 GTTTACAGTA
* *
14647284 AAGGCTTCAGCCCAGAGATATGATTTATGAT
1 AAGGCTTCGGCCCAGTGATATGATTTATGAT
14647315 AAGGCTTCGGCCCAGTGATATGATTTATGAT
1 AAGGCTTCGGCCCAGTGATATGATTTATGAT
* *
14647346 AAGGCTTCGGCCTAGTGATATGATTTATGAA
1 AAGGCTTCGGCCCAGTGATATGATTTATGAT
14647377 AAGGCTTCGGCC
1 AAGGCTTCGGCC
14647389 TAGTAATCGT
Statistics
Matches: 70, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
31 70 1.00
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.30
Consensus pattern (31 bp):
AAGGCTTCGGCCCAGTGATATGATTTATGAT
Found at i:14649674 original size:27 final size:27
Alignment explanation
Indices: 14649644--14649751 Score: 135
Period size: 27 Copynumber: 4.0 Consensus size: 27
14649634 AATCTCATAT
* *
14649644 CTGTAGGCTAGTATTACTGAAATACCC
1 CTGTAGGGTAGAATTACTGAAATACCC
* *
14649671 CTGTAGGGTAGAATTACTAAAATGCCC
1 CTGTAGGGTAGAATTACTGAAATACCC
* * * *
14649698 CTATAGGATAGAATTATTGAAATGCCC
1 CTGTAGGGTAGAATTACTGAAATACCC
*
14649725 CTGTAGGGTAGAATTATTGAAATACCC
1 CTGTAGGGTAGAATTACTGAAATACCC
14649752 TTGATTAGCA
Statistics
Matches: 70, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 70 1.00
ACGTcount: A:0.33, C:0.18, G:0.20, T:0.29
Consensus pattern (27 bp):
CTGTAGGGTAGAATTACTGAAATACCC
Found at i:14649774 original size:27 final size:27
Alignment explanation
Indices: 14649744--14649997 Score: 192
Period size: 27 Copynumber: 9.4 Consensus size: 27
14649734 AGAATTATTG
* * *
14649744 AAATACCCTTGATTAGCAAAATTGCCA
1 AAATACCCTTGATTTGTAAAATTACCA
* *
14649771 AAATACCCCTT-ATTTTTAAAAATACCA
1 AAATA-CCCTTGATTTGTAAAATTACCA
* * * *
14649798 AAATACCCCTGATTTGTGAAATTATCG
1 AAATACCCTTGATTTGTAAAATTACCA
*
14649825 AAATACCCTCGATTTGTAAAATTACCA
1 AAATACCCTTGATTTGTAAAATTACCA
* * **
14649852 AAATA-CCTCTAATTTGGAAAATTACTG
1 AAATACCCT-TGATTTGTAAAATTACCA
* *
14649879 AAATACCCTTGATTTGGAAAATTACAA
1 AAATACCCTTGATTTGTAAAATTACCA
* * **
14649906 AAATACCCCAT-ACTTACAAAATTA-CA
1 AAATA-CCCTTGATTTGTAAAATTACCA
* **
14649932 GAAATACCATTGACTTTAAAAAATTACCA
1 -AAATACCCTTGA-TTTGTAAAATTACCA
* * *
14649961 AAATACCCTTGGTTTGTAGATTTACCA
1 AAATACCCTTGATTTGTAAAATTACCA
*
14649988 AAACACCCTT
1 AAATACCCTT
14649998 TAGGGTGAAA
Statistics
Matches: 178, Mismatches: 40, Indels: 18
0.75 0.17 0.08
Matches are distributed among these distances:
26 11 0.06
27 133 0.75
28 32 0.18
29 2 0.01
ACGTcount: A:0.41, C:0.20, G:0.08, T:0.30
Consensus pattern (27 bp):
AAATACCCTTGATTTGTAAAATTACCA
Found at i:14650280 original size:41 final size:41
Alignment explanation
Indices: 14650235--14650357 Score: 174
Period size: 41 Copynumber: 3.0 Consensus size: 41
14650225 GGAGGAAGAA
*
14650235 ATTGAGGATTGCATGGTTGCTTGACGACCATGGATTCACCG
1 ATTGAGGATTGCATGGTTGCTTGACGACCATGGATCCACCG
* *
14650276 ATTGAGGATCGCATGGTTGCTTGACGACCGTGGATCCACCG
1 ATTGAGGATTGCATGGTTGCTTGACGACCATGGATCCACCG
* * * * *
14650317 GTTAAGGATTGCATGGTTGCTTGACGATCGTGGTTCCACCG
1 ATTGAGGATTGCATGGTTGCTTGACGACCATGGATCCACCG
14650358 GTGGTTTTTA
Statistics
Matches: 74, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
41 74 1.00
ACGTcount: A:0.20, C:0.21, G:0.31, T:0.28
Consensus pattern (41 bp):
ATTGAGGATTGCATGGTTGCTTGACGACCATGGATCCACCG
Found at i:14650557 original size:50 final size:50
Alignment explanation
Indices: 14650498--14650723 Score: 371
Period size: 50 Copynumber: 4.5 Consensus size: 50
14650488 AGCCAATTAT
** *
14650498 TCTGTTATCGATGGCTTTGTGCTAATATGGTATTGATGGCTATGTGCCGA
1 TCTGTTATCGATGGCTTTGTGCCGATATGATATTGATGGCTATGTGCCGA
14650548 TCTGTTATCGATGGCTTTGTGCCGATATGATATTGATGGCTATGTGCCGA
1 TCTGTTATCGATGGCTTTGTGCCGATATGATATTGATGGCTATGTGCCGA
* * *
14650598 TCTATTATCGATGGCTTTGTGCTGATATGATATTGATGGCTATGTGCCAA
1 TCTGTTATCGATGGCTTTGTGCCGATATGATATTGATGGCTATGTGCCGA
* *
14650648 TCTGTTATCGATGGCTTTGTGCCGATATGATATTGATGGCTATGTACTGA
1 TCTGTTATCGATGGCTTTGTGCCGATATGATATTGATGGCTATGTGCCGA
*
14650698 TCTGTTATCGATGGCTTTGTACCGAT
1 TCTGTTATCGATGGCTTTGTGCCGAT
14650724 CGTATTATCG
Statistics
Matches: 164, Mismatches: 12, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
50 164 1.00
ACGTcount: A:0.19, C:0.15, G:0.26, T:0.40
Consensus pattern (50 bp):
TCTGTTATCGATGGCTTTGTGCCGATATGATATTGATGGCTATGTGCCGA
Found at i:14650710 original size:25 final size:25
Alignment explanation
Indices: 14650498--14650733 Score: 238
Period size: 25 Copynumber: 9.4 Consensus size: 25
14650488 AGCCAATTAT
**
14650498 TCTGTTATCGATGGCTTTGTGCTAA
1 TCTGTTATCGATGGCTTTGTGCCGA
* * * *
14650523 TATGGTATTGATGGCTATGTGCCGA
1 TCTGTTATCGATGGCTTTGTGCCGA
14650548 TCTGTTATCGATGGCTTTGTGCCGA
1 TCTGTTATCGATGGCTTTGTGCCGA
* * * *
14650573 TATGATATTGATGGCTATGTGCCGA
1 TCTGTTATCGATGGCTTTGTGCCGA
* *
14650598 TCTATTATCGATGGCTTTGTGCTGA
1 TCTGTTATCGATGGCTTTGTGCCGA
* * * * *
14650623 TATGATATTGATGGCTATGTGCCAA
1 TCTGTTATCGATGGCTTTGTGCCGA
14650648 TCTGTTATCGATGGCTTTGTGCCGA
1 TCTGTTATCGATGGCTTTGTGCCGA
* * * * * *
14650673 TATGATATTGATGGCTATGTACTGA
1 TCTGTTATCGATGGCTTTGTGCCGA
*
14650698 TCTGTTATCGATGGCTTTGTACCGA
1 TCTGTTATCGATGGCTTTGTGCCGA
*
14650723 TCGTATTATCG
1 TC-TGTTATCG
14650734 TAATAATGGC
Statistics
Matches: 166, Mismatches: 44, Indels: 1
0.79 0.21 0.00
Matches are distributed among these distances:
25 159 0.96
26 7 0.04
ACGTcount: A:0.19, C:0.15, G:0.26, T:0.40
Consensus pattern (25 bp):
TCTGTTATCGATGGCTTTGTGCCGA
Found at i:14652057 original size:29 final size:30
Alignment explanation
Indices: 14652004--14652061 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 30
14651994 CAGAAGTTTT
* *
14652004 GGCACTAAGTGTGCGTTTTAAACTAGCTTG
1 GGCACTAAGTGTACGATTTAAACTAGCTTG
*
14652034 GGCATTAAGTGTACGATTT-AACTAGCTT
1 GGCACTAAGTGTACGATTTAAACTAGCTT
14652062 CGGCTATTTG
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
29 9 0.36
30 16 0.64
ACGTcount: A:0.26, C:0.16, G:0.24, T:0.34
Consensus pattern (30 bp):
GGCACTAAGTGTACGATTTAAACTAGCTTG
Found at i:14654311 original size:27 final size:26
Alignment explanation
Indices: 14654273--14654670 Score: 145
Period size: 27 Copynumber: 14.8 Consensus size: 26
14654263 ATACCCCCAA
* *
14654273 TTGT-AAATTACCAAAGTACCCCCGGT
1 TTGTAAAATTACCAAA-TACCCTCGAT
* * *
14654299 TTATAAAATTACCCAAATATCCTCAAT
1 TTGTAAAATTA-CCAAATACCCTCGAT
14654326 TTGTAAAATTACCGAAATACCCTC-AGT
1 TTGTAAAATTACC-AAATACCCTCGA-T
* * *
14654353 TTGCAAAATTACTAAAATACCCTCGAC
1 TTGTAAAATTAC-CAAATACCCTCGAT
* *
14654380 TTGTCAAATTATCAAAGTACCCTCGAT
1 TTGTAAAATTACCAAA-TACCCTCGAT
* ****
14654407 TTATAAAATTATCGTTTTACCCTCGAT
1 TTGTAAAATTA-CCAAATACCCTCGAT
* ** *
14654434 TT-AAAAGATTACCATTTTACCCTC-AGC
1 TTGTAAA-ATTACCA-AATACCCTCGA-T
**** *
14654461 TTGTAAAATTACTGTTTTACCCTAGA-
1 TTGTAAAATTAC-CAAATACCCTCGAT
* * *
14654487 TTGT-GAATTACTAAAATGCCCAT-G-T
1 TTGTAAAATTAC-CAAATACCC-TCGAT
** * *
14654512 AGGATAGAATTACCAAAATACCC-CTGGT
1 TTG-TAAAATTACC-AAATACCCTC-GAT
*
14654540 TTGTAAAATTACCAAAATACCC-CTAGT
1 TTGTAAAATTACC-AAATACCCTCGA-T
* *
14654567 TTGTAAAATTACCGAATTACCACT-GGT
1 TTGTAAAATTACC-AAATACC-CTCGAT
* *
14654594 TTGTGAAATTACCGAAATACCCTCAAT
1 TTGTAAAATTACC-AAATACCCTCGAT
*
14654621 TTGTAAAATTACCAAAATACCC-CTAAT
1 TTGTAAAATTACC-AAATACCCTC-GAT
* *
14654648 TTATAAAATTACAGAAATACCCT
1 TTGTAAAATTAC-CAAATACCCT
14654671 TGACTTTCTA
Statistics
Matches: 286, Mismatches: 57, Indels: 56
0.72 0.14 0.14
Matches are distributed among these distances:
25 13 0.05
26 23 0.08
27 237 0.83
28 13 0.05
ACGTcount: A:0.37, C:0.21, G:0.10, T:0.32
Consensus pattern (26 bp):
TTGTAAAATTACCAAATACCCTCGAT
Found at i:14654371 original size:54 final size:52
Alignment explanation
Indices: 14654244--14654417 Score: 163
Period size: 54 Copynumber: 3.3 Consensus size: 52
14654234 AGAATACTTT
* * * *
14654244 AGTTTACCAAATTACTGAAATACCCCCAATTGTAAATTACCAAAGTACCCCC
1 AGTTTACAAAATTACTAAAATACCCTCAATTGTAAATTACCAAAGTACCCTC
* * ** *
14654296 GGTTTATAAAATTACCCAAATATCCTCAATTTGTAAAATTACCGAAA-TACCCTC
1 AGTTTACAAAATTACTAAAATACCCTCAA-TTGT-AAATTACC-AAAGTACCCTC
* * *
14654350 AGTTTGCAAAATTACTAAAATACCCTCGACTTGTCAAATTATCAAAGTACCCTC
1 AGTTTACAAAATTACTAAAATACCCTC-AATTGT-AAATTACCAAAGTACCCTC
*
14654404 -GATTTATAAAATTA
1 AG-TTTACAAAATTA
14654418 TCGTTTTACC
Statistics
Matches: 97, Mismatches: 19, Indels: 10
0.77 0.15 0.08
Matches are distributed among these distances:
52 22 0.23
53 8 0.08
54 63 0.65
55 4 0.04
ACGTcount: A:0.39, C:0.23, G:0.08, T:0.30
Consensus pattern (52 bp):
AGTTTACAAAATTACTAAAATACCCTCAATTGTAAATTACCAAAGTACCCTC
Found at i:14654613 original size:81 final size:81
Alignment explanation
Indices: 14654519--14654668 Score: 221
Period size: 81 Copynumber: 1.9 Consensus size: 81
14654509 TGTAGGATAG
** * * *
14654519 AATTACCAAAATACCC-CTGGTTTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCGAA
1 AATTACCAAAATACCCTC-AATTTGTAAAATTACCAAAATACCCCTAATTTATAAAATTACAGAA
*
14654583 TTACCACTGGTTTGTGA
65 ATACCACTGGTTTGTGA
*
14654600 AATTACCGAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTAATTTATAAAATTACAGAAA
1 AATTACCAAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTAATTTATAAAATTACAGAAA
14654665 TACC
66 TACC
14654669 CTTGACTTTC
Statistics
Matches: 61, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
81 60 0.98
82 1 0.02
ACGTcount: A:0.41, C:0.21, G:0.09, T:0.29
Consensus pattern (81 bp):
AATTACCAAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTAATTTATAAAATTACAGAAA
TACCACTGGTTTGTGA
Found at i:14654670 original size:54 final size:55
Alignment explanation
Indices: 14654519--14654670 Score: 193
Period size: 54 Copynumber: 2.8 Consensus size: 55
14654509 TGTAGGATAG
*
14654519 AATTACCAAAATACCCCTGGTTTGTAAAATTACCA-AAATACCC-CTAGTTTGTAA
1 AATTACCAAAATACCCCTGGTTTGTAAAATTA-CAGAAATACCCTCTAATTTGTAA
* * * * *
14654573 AATTACCGAATTACCACTGGTTTGTGAAATTACCGAAATACCCTC-AATTTGTAA
1 AATTACCAAAATACCCCTGGTTTGTAAAATTACAGAAATACCCTCTAATTTGTAA
** *
14654627 AATTACCAAAATACCCCTAATTTATAAAATTACAGAAATACCCT
1 AATTACCAAAATACCCCTGGTTTGTAAAATTACAGAAATACCCT
14654671 TGACTTTCTA
Statistics
Matches: 82, Mismatches: 14, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
53 1 0.01
54 80 0.98
55 1 0.01
ACGTcount: A:0.40, C:0.22, G:0.09, T:0.30
Consensus pattern (55 bp):
AATTACCAAAATACCCCTGGTTTGTAAAATTACAGAAATACCCTCTAATTTGTAA
Found at i:14654860 original size:27 final size:27
Alignment explanation
Indices: 14654802--14654861 Score: 68
Period size: 27 Copynumber: 2.2 Consensus size: 27
14654792 AGACTGTAAA
* *
14654802 GCCCTTGTAGGGTAAAGTGACCATAAT
1 GCCCTTGTAGGGTAAAATGACAATAAT
* *
14654829 ACCCTTGTATGGTAAAATGACGAAT-AT
1 GCCCTTGTAGGGTAAAATGAC-AATAAT
14654856 GCCCTT
1 GCCCTT
14654862 ATGTTCCGTA
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
27 25 0.93
28 2 0.07
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.28
Consensus pattern (27 bp):
GCCCTTGTAGGGTAAAATGACAATAAT
Found at i:14655696 original size:25 final size:24
Alignment explanation
Indices: 14655658--14655740 Score: 96
Period size: 25 Copynumber: 3.4 Consensus size: 24
14655648 AGGAAGTGCT
* *
14655658 AAAAGGGCTCTGCCCCAGTTTACTG
1 AAAAGGGCTTTGCCCCAGTTTA-TC
*
14655683 AAAAGGGCTTTGCCCTAGTTTATC
1 AAAAGGGCTTTGCCCCAGTTTATC
*
14655707 AGAAAGGGCTTTGCCCCAG-TTATT
1 A-AAAGGGCTTTGCCCCAGTTTATC
14655731 AAAAGAGGCT
1 AAAAG-GGCT
14655741 AGGCATCCAG
Statistics
Matches: 51, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
23 4 0.08
24 11 0.22
25 36 0.71
ACGTcount: A:0.28, C:0.22, G:0.24, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTTGCCCCAGTTTATC
Found at i:14655939 original size:42 final size:42
Alignment explanation
Indices: 14655875--14656007 Score: 232
Period size: 42 Copynumber: 3.2 Consensus size: 42
14655865 TAGTCTCCCC
*
14655875 AAATAGGCTTGCATACATTCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
*
14655917 AAATGGGCTTGCATACATTCATTGACATTACATTTGATATTG
1 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
*
14655959 AAAT-GGCTTGCATACATCCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
14656000 AAATGGGC
1 AAATGGGC
14656008 CTAAGGGCCA
Statistics
Matches: 86, Mismatches: 4, Indels: 2
0.93 0.04 0.02
Matches are distributed among these distances:
41 39 0.45
42 47 0.55
ACGTcount: A:0.32, C:0.15, G:0.18, T:0.35
Consensus pattern (42 bp):
AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
Found at i:14656067 original size:31 final size:31
Alignment explanation
Indices: 14656031--14656176 Score: 258
Period size: 31 Copynumber: 4.7 Consensus size: 31
14656021 CGTTTACAGT
*
14656031 AAAGGCTTCGGCCTAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
14656062 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
14656093 AAAGGCTTCGGCCCAGTGATATGATTTATGG
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
14656124 AAAGGCTTTGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
14656155 AAAGGCTTCGGCCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
14656177 TCAAGACTAA
Statistics
Matches: 110, Mismatches: 5, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
30 5 0.05
31 105 0.95
ACGTcount: A:0.28, C:0.16, G:0.27, T:0.29
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:14658490 original size:27 final size:27
Alignment explanation
Indices: 14658418--14658910 Score: 246
Period size: 27 Copynumber: 18.4 Consensus size: 27
14658408 CCAAATTGCT
*
14658418 GAAATACCC-C-AGTTGTAAAATTACC
1 GAAATACCCTCGATTTGTAAAATTACC
* * *
14658443 -AAAGTACCCCCGGTTTCTAAAATTACC
1 GAAA-TACCCTCGATTTGTAAAATTACC
**
14658470 GAAATAATCTCGATTTGTAAAATTACC
1 GAAATACCCTCGATTTGTAAAATTACC
* *
14658497 GAAATACCCTC-AGTTTGCAAAATTACT
1 GAAATACCCTCGA-TTTGTAAAATTACC
* *
14658524 GAAATACCCTCGACTTGTAAAATTATC
1 GAAATACCCTCGATTTGTAAAATTACC
* * * *
14658551 AAAATACCCTCGATTTATAGAATTATC
1 GAAATACCCTCGATTTGTAAAATTACC
*** *
14658578 GTTTTACCCTCGATTTATAAAATTACC
1 GAAATACCCTCGATTTGTAAAATTACC
** * *
14658605 -ATTTTACCCTC-AGTT-TACAAAATACC
1 GA-AATACCCTCGATTTGTA-AAATTACC
** *
14658631 -ATTTTACCCTCGATTATG--AAATTACT
1 GA-AATACCCTCGATT-TGTAAAATTACC
* ** *
14658657 GAAATACCCTTG-TAGGATAGAATTACC
1 GAAATACCCTCGATTTG-TAAAATTACC
* *
14658684 AAAATACCC-CTAGTTTGTAAAATTACC
1 GAAATACCCTCGA-TTTGTAAAATTACC
* *
14658711 AAAATACCC-CTAGTTTGTAAAATTACC
1 GAAATACCCTCGA-TTTGTAAAATTACC
* *
14658738 GAAATACCACT-GGTTTGTGAAATTA-C
1 GAAATACC-CTCGATTTGTAAAATTACC
* *
14658764 TAAATACCCTCAATTTGTAAAATTACC
1 GAAATACCCTCGATTTGTAAAATTACC
* ** *
14658791 AAAATACCC-CTGATTTACAAAATTACA
1 GAAATACCCTC-GATTTGTAAAATTACC
* * **
14658818 GAAATACCCTTGACTTTCTAAAAATTATA
1 GAAATACCCTCGA-TTTGT-AAAATTACC
* ** *
14658847 GAAATACCATTCG-TTTACAAAATTACT
1 GAAATACC-CTCGATTTGTAAAATTACC
* * * *
14658874 GAAATACCCTTGGTTTGTAGATTTACC
1 GAAATACCCTCGATTTGTAAAATTACC
* *
14658901 AAAACACCCT
1 GAAATACCCT
14658911 TGTAGGATGA
Statistics
Matches: 363, Mismatches: 78, Indels: 52
0.74 0.16 0.11
Matches are distributed among these distances:
24 4 0.01
25 10 0.03
26 58 0.16
27 259 0.71
28 14 0.04
29 16 0.04
30 2 0.01
ACGTcount: A:0.38, C:0.21, G:0.10, T:0.31
Consensus pattern (27 bp):
GAAATACCCTCGATTTGTAAAATTACC
Found at i:14658814 original size:53 final size:54
Alignment explanation
Indices: 14658677--14658827 Score: 182
Period size: 53 Copynumber: 2.8 Consensus size: 54
14658667 TGTAGGATAG
*
14658677 AATTACCAAAATACCCCT-AGTTTGTAAAATTACCAAAATACCC-CTAGTTTGTAA
1 AATTACCAAAATACCCCTGA-TTTGTAAAATTA-CAAAATACCCTCTAATTTGTAA
* * * * *
14658731 AATTACCGAAATACCACTGGTTTGTGAAATTACTAAATACCCTC-AATTTGTAA
1 AATTACCAAAATACCCCTGATTTGTAAAATTACAAAATACCCTCTAATTTGTAA
**
14658784 AATTACCAAAATACCCCTGATTTACAAAATTACAGAAATACCCT
1 AATTACCAAAATACCCCTGATTTGTAAAATTACA-AAATACCCT
14658828 TGACTTTCTA
Statistics
Matches: 81, Mismatches: 13, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
53 44 0.54
54 37 0.46
ACGTcount: A:0.41, C:0.22, G:0.08, T:0.29
Consensus pattern (54 bp):
AATTACCAAAATACCCCTGATTTGTAAAATTACAAAATACCCTCTAATTTGTAA
Found at i:14659018 original size:27 final size:28
Alignment explanation
Indices: 14658943--14659019 Score: 81
Period size: 27 Copynumber: 2.9 Consensus size: 28
14658933 ACCCCTAATA
* *
14658943 GGTAAAAAGACTGTAA-AGCCCTTGTAG
1 GGTAAAATGACCGTAATAGCCCTTGTAG
* *
14658970 GGTAAAGTGACCGTAATA-CCCTTGTAT
1 GGTAAAATGACCGTAATAGCCCTTGTAG
14658997 GGTAAAATGA-CG-AATATGCCCTT
1 GGTAAAATGACCGTAATA-GCCCTT
14659020 ATGTTCCGTA
Statistics
Matches: 42, Mismatches: 5, Indels: 6
0.79 0.09 0.11
Matches are distributed among these distances:
25 4 0.10
26 2 0.05
27 35 0.83
28 1 0.02
ACGTcount: A:0.34, C:0.17, G:0.23, T:0.26
Consensus pattern (28 bp):
GGTAAAATGACCGTAATAGCCCTTGTAG
Found at i:14659837 original size:25 final size:24
Alignment explanation
Indices: 14659799--14659868 Score: 95
Period size: 25 Copynumber: 2.8 Consensus size: 24
14659789 AGGAAGTGCT
*
14659799 AAAAGGGCTCTGCCCCAGTTTACC
1 AAAAGGGCTTTGCCCCAGTTTACC
* *
14659823 GAAAAGGGCTTTGCCCTAGTTTATC
1 -AAAAGGGCTTTGCCCCAGTTTACC
14659848 AGAAAGGGCTTTGCCCCAGTT
1 A-AAAGGGCTTTGCCCCAGTT
14659869 ATTAAAAGAG
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
24 1 0.03
25 39 0.98
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (24 bp):
AAAAGGGCTTTGCCCCAGTTTACC
Found at i:14659881 original size:24 final size:24
Alignment explanation
Indices: 14659798--14659881 Score: 89
Period size: 25 Copynumber: 3.4 Consensus size: 24
14659788 GAGGAAGTGC
* *
14659798 TAAAAGGGCTCTGCCCCAGTTTACC
1 TAAAAGGGCTTTGCCCCAGTTTA-T
* *
14659823 GAAAAGGGCTTTGCCCTAGTTTAT
1 TAAAAGGGCTTTGCCCCAGTTTAT
*
14659847 CAGAAAGGGCTTTGCCCCAG-TTAT
1 TA-AAAGGGCTTTGCCCCAGTTTAT
14659871 TAAAAGAGGCT
1 TAAAAG-GGCT
14659882 AGGCCTCCAG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
23 4 0.08
24 10 0.20
25 36 0.72
ACGTcount: A:0.27, C:0.23, G:0.24, T:0.26
Consensus pattern (24 bp):
TAAAAGGGCTTTGCCCCAGTTTAT
Found at i:14660075 original size:42 final size:42
Alignment explanation
Indices: 14660016--14660149 Score: 259
Period size: 42 Copynumber: 3.2 Consensus size: 42
14660006 TAGTCTCCCC
14660016 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
14660058 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
*
14660100 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
14660142 AAATGGGC
1 AAATGGGC
14660150 CTAAGGGCCA
Statistics
Matches: 91, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
42 91 1.00
ACGTcount: A:0.31, C:0.15, G:0.20, T:0.34
Consensus pattern (42 bp):
AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
Found at i:14660208 original size:31 final size:31
Alignment explanation
Indices: 14660173--14660318 Score: 258
Period size: 31 Copynumber: 4.7 Consensus size: 31
14660163 CGTTTACAGT
*
14660173 AAAGGCTTCGGCCCAGTGATGTGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
14660204 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
14660235 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
14660266 AAAGGCTTCGGCCCAGTGATATGATTTATGG
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
14660297 AAAGGCTTCAGCCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
14660319 TCAAGACTAA
Statistics
Matches: 112, Mismatches: 3, Indels: 1
0.97 0.03 0.01
Matches are distributed among these distances:
30 5 0.04
31 107 0.96
ACGTcount: A:0.28, C:0.17, G:0.27, T:0.28
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:14662275 original size:17 final size:17
Alignment explanation
Indices: 14662255--14662305 Score: 57
Period size: 17 Copynumber: 2.8 Consensus size: 17
14662245 ATAAATATAA
*
14662255 TAATATTAATAATAGAT
1 TAATATTAATAATACAT
*
14662272 TAATATTAATAGAAACAT
1 TAATATTAATA-ATACAT
14662290 TAAATATTAATCAATA
1 T-AATATTAAT-AATA
14662306 AAAAACTAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
17 11 0.39
18 5 0.18
19 11 0.39
20 1 0.04
ACGTcount: A:0.55, C:0.04, G:0.04, T:0.37
Consensus pattern (17 bp):
TAATATTAATAATACAT
Found at i:14662458 original size:9 final size:9
Alignment explanation
Indices: 14662444--14662469 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
14662434 CATTAAATTC
14662444 AAATTTTAT
1 AAATTTTAT
14662453 AAATTTTAT
1 AAATTTTAT
14662462 AAATTTTA
1 AAATTTTA
14662470 ATAATTAATA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (9 bp):
AAATTTTAT
Found at i:14663185 original size:15 final size:16
Alignment explanation
Indices: 14663165--14663195 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
14663155 TGATATTTGG
14663165 ATGATTAAATT-TTTT
1 ATGATTAAATTATTTT
14663180 ATGATTAAATTATTTT
1 ATGATTAAATTATTTT
14663196 CATTAAATAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 11 0.73
16 4 0.27
ACGTcount: A:0.35, C:0.00, G:0.06, T:0.58
Consensus pattern (16 bp):
ATGATTAAATTATTTT
Found at i:14665531 original size:20 final size:20
Alignment explanation
Indices: 14665503--14665544 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
14665493 CTAAATCGAT
14665503 AACTCAGAAAAATTTTACAA
1 AACTCAGAAAAATTTTACAA
* **
14665523 AACTTAGAAATTTTTTACAA
1 AACTCAGAAAAATTTTACAA
14665543 AA
1 AA
14665545 TACAGGGGGC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.52, C:0.12, G:0.05, T:0.31
Consensus pattern (20 bp):
AACTCAGAAAAATTTTACAA
Found at i:14669233 original size:2 final size:2
Alignment explanation
Indices: 14669226--14669289 Score: 128
Period size: 2 Copynumber: 32.0 Consensus size: 2
14669216 AGGCCATTAG
14669226 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
14669268 CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA
14669290 TATACATCTC
Statistics
Matches: 62, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 62 1.00
ACGTcount: A:0.50, C:0.50, G:0.00, T:0.00
Consensus pattern (2 bp):
CA
Found at i:14675507 original size:46 final size:46
Alignment explanation
Indices: 14675238--14675508 Score: 205
Period size: 47 Copynumber: 5.8 Consensus size: 46
14675228 ACTTCTCGTT
* * * * *
14675238 GCCGATGCCATGTCCCAGACATGGTCTTATACTAGCTCTCGTATATACG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCACTCATATCTA-G
** * ** *
14675287 TGTTGATGCATGTCCC-GAACATGTCTTACACTAGCGAGAC-TCT-TA-
1 -GCCGATGCATGTCCCAG-ACATGTCTTACACTGGC-ACTCATATCTAG
* * *
14675332 GCCGGTGCATGTCCTAGACACT-TCTTACACTGGCTA-TCATCATCAAG
1 GCCGATGCATGTCCCAGACA-TGTCTTACACTGGC-ACTCAT-ATCTAG
* *
14675379 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTCATATCTAC
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCACTCATATCTAG
* * * *
14675425 GCCGATGTCATGTCCCAGGCATGGTCTTACATTGGCACTTATAATGT-G
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCACTCAT-ATCTAG
14675473 GCCGATGCATGTCCCAGACATGTCTTACACTGGCAC
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCAC
14675509 ACAAGAAATC
Statistics
Matches: 179, Mismatches: 29, Indels: 30
0.75 0.12 0.13
Matches are distributed among these distances:
43 1 0.01
44 27 0.15
45 3 0.02
46 27 0.15
47 62 0.35
48 38 0.21
49 16 0.09
50 5 0.03
ACGTcount: A:0.23, C:0.28, G:0.21, T:0.28
Consensus pattern (46 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGGCACTCATATCTAG
Found at i:14685790 original size:12 final size:12
Alignment explanation
Indices: 14685773--14685800 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
14685763 AACAAAACTG
14685773 GTTTTTAGCGGC
1 GTTTTTAGCGGC
14685785 GTTTTTAGCGGC
1 GTTTTTAGCGGC
14685797 GTTT
1 GTTT
14685801 GAATAAAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.07, C:0.14, G:0.32, T:0.46
Consensus pattern (12 bp):
GTTTTTAGCGGC
Found at i:14686561 original size:7 final size:7
Alignment explanation
Indices: 14686484--14686578 Score: 66
Period size: 7 Copynumber: 13.4 Consensus size: 7
14686474 TATGTATCAT
14686484 GGGTTTA
1 GGGTTTA
*
14686491 GGGATTA
1 GGGTTTA
*
14686498 TGGTTTA
1 GGGTTTA
*
14686505 TGGTTTA
1 GGGTTTA
*
14686512 TGGGTTAA
1 -GGGTTTA
*
14686520 AGG-TTA
1 GGGTTTA
14686526 GGGTTTA
1 GGGTTTA
* *
14686533 AGTTTTA
1 GGGTTTA
*
14686540 GGGTATTG
1 GGGT-TTA
14686548 GGGTTTA
1 GGGTTTA
*
14686555 AGGTTTA
1 GGGTTTA
*
14686562 GGGGTTA
1 GGGTTTA
*
14686569 GGGTTAA
1 GGGTTTA
14686576 GGG
1 GGG
14686579 ATTATGTTTT
Statistics
Matches: 66, Mismatches: 19, Indels: 6
0.73 0.21 0.07
Matches are distributed among these distances:
6 4 0.06
7 51 0.77
8 11 0.17
ACGTcount: A:0.20, C:0.00, G:0.40, T:0.40
Consensus pattern (7 bp):
GGGTTTA
Found at i:14690010 original size:40 final size:40
Alignment explanation
Indices: 14689926--14690110 Score: 218
Period size: 40 Copynumber: 4.7 Consensus size: 40
14689916 TCGAATGATG
* *
14689926 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
*
14689965 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
* * *
14690006 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTCACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
*
14690045 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
14690084 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
14690111 AACGAGTAGC
Statistics
Matches: 125, Mismatches: 14, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
39 35 0.28
40 80 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:14690062 original size:79 final size:81
Alignment explanation
Indices: 14689926--14690108 Score: 241
Period size: 79 Copynumber: 2.3 Consensus size: 81
14689916 TCGAATGATG
* * *
14689926 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTCACTAAATCCGGACTAAGATCCGAAGGCATT
14689990 TGTGCGAGTTACTA-A
66 TGTGCGAGTTACTATA
* **
14690005 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTCACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTCACTAAATCCGGACTAAGAT-CCGAAGGCA
14690067 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGTTACTATA
* *
14690085 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
14690109 TGAACGAGTA
Statistics
Matches: 91, Mismatches: 8, Indels: 8
0.85 0.07 0.07
Matches are distributed among these distances:
78 1 0.01
79 60 0.66
80 30 0.33
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTCACTAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGTTACTATA
Found at i:14690132 original size:79 final size:78
Alignment explanation
Indices: 14689927--14690143 Score: 237
Period size: 79 Copynumber: 2.7 Consensus size: 78
14689917 CGAATGATGT
* *
14689927 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGT-GACTATATCCGGACTAAGATCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTAG-CTATATCCGG-TTAAG-TCCGAAGGCATT
*
14689990 TGTGCGAGTTACTAATT
62 TGTGCGAGTTACTAATA
* *
14690007 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTCA-CTAAATCCGGGTTAAGTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT-AGCTATATCC-GGTTAAGT-CCGAAGGCATTT
14690070 GTGCGAGTTACT-ATAA
63 GTGCGAGTTACTAAT-A
* ** *
14690086 CCGGGCTATGTCCCGAAGGCATTTGAACGAGTAGCTATATCCGGTTAAATTCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGCTATATCCGGTT-AAGTCCGAAGG
14690144 TACGTGATTC
Statistics
Matches: 117, Mismatches: 11, Indels: 19
0.80 0.07 0.13
Matches are distributed among these distances:
78 3 0.03
79 68 0.58
80 46 0.39
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (78 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGCTATATCCGGTTAAGTCCGAAGGCATTTGTG
CGAGTTACTAATA
Found at i:14697111 original size:78 final size:81
Alignment explanation
Indices: 14696977--14697159 Score: 232
Period size: 78 Copynumber: 2.3 Consensus size: 81
14696967 TGAATGATGT
*
14696977 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
*
14697041 GTGCGAGATACTA-AT
66 GTGCGAGATACTATAA
* * * * **
14697056 TCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCATT
*
14697118 TGTGCGAGTTACTATAA
65 TGTGCGAGATACTATAA
*
14697135 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
14697160 AACGAGGAGC
Statistics
Matches: 89, Mismatches: 11, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
77 1 0.01
78 49 0.55
79 25 0.28
80 14 0.16
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (81 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGATACTATAA
Found at i:14697121 original size:40 final size:40
Alignment explanation
Indices: 14696976--14697159 Score: 225
Period size: 40 Copynumber: 4.7 Consensus size: 40
14696966 TTGAATGATG
* * * *
14696976 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
14697016 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACT-AA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
14697055 TTCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
14697094 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
14697135 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
14697160 AACGAGGAGC
Statistics
Matches: 125, Mismatches: 13, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
38 23 0.18
39 21 0.17
40 71 0.57
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:14705052 original size:40 final size:39
Alignment explanation
Indices: 14704968--14705152 Score: 203
Period size: 40 Copynumber: 4.6 Consensus size: 39
14704958 TTGAATGATG
* * * *
14704968 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
14705008 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
*
14705048 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
*
14705087 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTA-AA
* *
14705128 -CCGGGCTATGTCCCAAAGGCATTTG
1 TCCGGGCTAAGT-CCGAAGGCATTTG
14705153 AACGAGGAGC
Statistics
Matches: 125, Mismatches: 16, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
39 35 0.28
40 80 0.64
41 10 0.08
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:14705104 original size:79 final size:81
Alignment explanation
Indices: 14704968--14705152 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
14704958 TTGAATGATG
*
14704968 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
14705032 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
14705047 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
14705109 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* * *
14705127 ACCGGGCTATGTCCCAAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
14705153 AACGAGGAGC
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.64
80 32 0.35
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:14705174 original size:79 final size:79
Alignment explanation
Indices: 14705021--14705185 Score: 192
Period size: 79 Copynumber: 2.1 Consensus size: 79
14705011 GGACTAAGAT
* * ** *
14705021 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCAAAGGCATTTGAACGAGTGACTAA
*
14705086 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
14705100 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCAAAGGCATTTGAACGAG-GAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCAAAGGCATTTGAACGAGTGA-C
* *
14705163 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
14705179 CCGAAGG
1 CCGAAGG
14705186 TACGTGATTT
Statistics
Matches: 73, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
78 2 0.03
79 47 0.64
80 24 0.33
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCAAAGGCATTTGAACGAGTGACTAA
ATCCGGGTTAAATC
Found at i:14723978 original size:56 final size:56
Alignment explanation
Indices: 14723916--14724038 Score: 178
Period size: 56 Copynumber: 2.2 Consensus size: 56
14723906 TTGGCGCTAC
*
14723916 GTGTGCGGGTTTAAAT-TGTGCAGCACTAAGTGTGCGA-ATTGACTATGTAGCACTAA
1 GTGTGCGAGTTTAAATATGT--AGCACTAAGTGTGCGAGATTGACTATGTAGCACTAA
* * *
14723972 GTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAA
1 GTGTGCGAGTTTAAATATGTAGCACTAAGTGTGCGAGATTGACTATGTAGCACTAA
14724028 GTGTGCGAGTT
1 GTGTGCGAGTT
14724039 GACTATGTAG
Statistics
Matches: 61, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
55 16 0.26
56 42 0.69
57 3 0.05
ACGTcount: A:0.24, C:0.14, G:0.30, T:0.32
Consensus pattern (56 bp):
GTGTGCGAGTTTAAATATGTAGCACTAAGTGTGCGAGATTGACTATGTAGCACTAA
Found at i:14723994 original size:28 final size:28
Alignment explanation
Indices: 14723937--14724048 Score: 201
Period size: 28 Copynumber: 4.1 Consensus size: 28
14723927 TAAATTGTGC
*
14723937 AGCACTAAGTGTGCGA-ATTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
14723964 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
14723992 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
14724020 AGCACTAAGTGTGCGAG-TTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
14724047 AG
1 AG
14724049 AGTTGACTAT
Statistics
Matches: 83, Mismatches: 1, Indels: 2
0.97 0.01 0.02
Matches are distributed among these distances:
27 28 0.34
28 55 0.66
ACGTcount: A:0.27, C:0.14, G:0.29, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGACTATGT
Found at i:14724053 original size:14 final size:14
Alignment explanation
Indices: 14724034--14724062 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
14724024 CTAAGTGTGC
14724034 GAGTTGACTATGTA
1 GAGTTGACTATGTA
14724048 GAGTTGACTATGTA
1 GAGTTGACTATGTA
14724062 G
1 G
14724063 CACTAAGTGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.28, C:0.07, G:0.31, T:0.34
Consensus pattern (14 bp):
GAGTTGACTATGTA
Found at i:14724064 original size:41 final size:42
Alignment explanation
Indices: 14724010--14724090 Score: 146
Period size: 41 Copynumber: 2.0 Consensus size: 42
14724000 GTGTGCGAGT
14724010 TTGACTATGTAGCACTAAGTGTGCGAG-TTGACTATGTAGAG
1 TTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGTAGAG
*
14724051 TTGACTATGTAGCACTAAGTGTGCGAGTTTGATTATGTAG
1 TTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGTAG
14724091 CACTAAGTGT
Statistics
Matches: 38, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
41 27 0.71
42 11 0.29
ACGTcount: A:0.26, C:0.11, G:0.28, T:0.35
Consensus pattern (42 bp):
TTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGTAGAG
Found at i:14724066 original size:97 final size:96
Alignment explanation
Indices: 14723954--14724130 Score: 309
Period size: 97 Copynumber: 1.8 Consensus size: 96
14723944 AGTGTGCGAA
*
14723954 TTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATG
1 TTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAG-TTGACTATA
14724019 TAGCACTAAGTGTGCGAGTTGACTATGTAGAG
65 TAGCACTAAGTGTGCGAGTTGACTATGTAGAG
* *
14724051 TTGACTATGTAGCACTAAGTGTGCGAGTTTGATTATGTAGCACTAAGTGTGCGAGTTGATTATAT
1 TTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAGTTGACTATAT
*
14724116 AGCACTGAGTGTGCG
66 AGCACTAAGTGTGCG
14724131 GACTTAATAT
Statistics
Matches: 76, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
96 22 0.29
97 54 0.71
ACGTcount: A:0.25, C:0.13, G:0.29, T:0.33
Consensus pattern (96 bp):
TTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAGTTGACTATAT
AGCACTAAGTGTGCGAGTTGACTATGTAGAG
Found at i:14724087 original size:28 final size:27
Alignment explanation
Indices: 14724048--14724130 Score: 130
Period size: 27 Copynumber: 3.0 Consensus size: 27
14724038 TGACTATGTA
*
14724048 GAGTTGACTATGTAGCACTAAGTGTGC
1 GAGTTGATTATGTAGCACTAAGTGTGC
14724075 GAGTTTGATTATGTAGCACTAAGTGTGC
1 GAG-TTGATTATGTAGCACTAAGTGTGC
* *
14724103 GAGTTGATTATATAGCACTGAGTGTGC
1 GAGTTGATTATGTAGCACTAAGTGTGC
14724130 G
1 G
14724131 GACTTAATAT
Statistics
Matches: 52, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
27 26 0.50
28 26 0.50
ACGTcount: A:0.25, C:0.12, G:0.30, T:0.33
Consensus pattern (27 bp):
GAGTTGATTATGTAGCACTAAGTGTGC
Found at i:14724141 original size:27 final size:27
Alignment explanation
Indices: 14724051--14724143 Score: 89
Period size: 27 Copynumber: 3.4 Consensus size: 27
14724041 CTATGTAGAG
* * *
14724051 TTGACTATGTAGCACTAAGTGTGCGAGT
1 TTGAATATATAGCACTAAGTGTGCGA-C
* * *
14724079 TTGATTATGTAGCACTAAGTGTGCGAG
1 TTGAATATATAGCACTAAGTGTGCGAC
* *
14724106 TTGATTATATAGCACTGAGTGTGCGGAC
1 TTGAATATATAGCACTAAGTGTGC-GAC
14724134 TT-AATATATA
1 TTGAATATATA
14724144 TTCTTGAATC
Statistics
Matches: 58, Mismatches: 6, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
27 29 0.50
28 29 0.50
ACGTcount: A:0.28, C:0.12, G:0.26, T:0.34
Consensus pattern (27 bp):
TTGAATATATAGCACTAAGTGTGCGAC
Found at i:14730002 original size:30 final size:30
Alignment explanation
Indices: 14729968--14730025 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
14729958 CCTTAACTCT
14729968 AACTTTGGAAAAATTACAATTTTGCCCCTA
1 AACTTTGGAAAAATTACAATTTTGCCCCTA
* * * *
14729998 AACTTTTGAATACTTACACTTTTGCCCC
1 AACTTTGGAAAAATTACAATTTTGCCCC
14730026 AAAGCTCAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.31, C:0.24, G:0.09, T:0.36
Consensus pattern (30 bp):
AACTTTGGAAAAATTACAATTTTGCCCCTA
Found at i:14740106 original size:49 final size:52
Alignment explanation
Indices: 14740034--14740136 Score: 140
Period size: 50 Copynumber: 2.0 Consensus size: 52
14740024 TTCATCATTT
* *
14740034 TGATTAACATGAGTATACTTCATTTGAA-GCTTACCATTTCAATCCTTTTCA
1 TGATTAACATGAGTATACTTCATTTGAACACTTACCATTCCAATCCTTTTCA
* **
14740085 TGATT-ACATGA-TATAGTTCATTTGAACACTTACCATTCCTTTCCTTTTCA
1 TGATTAACATGAGTATACTTCATTTGAACACTTACCATTCCAATCCTTTTCA
14740135 TG
1 TG
14740137 CCCGTTGAAC
Statistics
Matches: 46, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
49 14 0.30
50 27 0.59
51 5 0.11
ACGTcount: A:0.27, C:0.20, G:0.10, T:0.43
Consensus pattern (52 bp):
TGATTAACATGAGTATACTTCATTTGAACACTTACCATTCCAATCCTTTTCA
Found at i:14744964 original size:21 final size:21
Alignment explanation
Indices: 14744940--14745009 Score: 72
Period size: 21 Copynumber: 3.3 Consensus size: 21
14744930 ATCAGGAGTT
*
14744940 AACATATTTATAGACCTATGA
1 AACATATTTATAGACATATGA
* * *
14744961 AACATA-TAAT-CACATAAGGCA
1 AACATATTTATAGACAT-ATG-A
14744982 AACATATTTATAGACATATGA
1 AACATATTTATAGACATATGA
14745003 AACATAT
1 AACATAT
14745010 AATCACATAT
Statistics
Matches: 38, Mismatches: 7, Indels: 8
0.72 0.13 0.15
Matches are distributed among these distances:
19 3 0.08
20 5 0.13
21 21 0.55
22 5 0.13
23 4 0.11
ACGTcount: A:0.49, C:0.14, G:0.09, T:0.29
Consensus pattern (21 bp):
AACATATTTATAGACATATGA
Found at i:14744986 original size:42 final size:42
Alignment explanation
Indices: 14744940--14745023 Score: 150
Period size: 42 Copynumber: 2.0 Consensus size: 42
14744930 ATCAGGAGTT
*
14744940 AACATATTTATAGACCTATGAAACATATAATCACATAAGGCA
1 AACATATTTATAGACATATGAAACATATAATCACATAAGGCA
*
14744982 AACATATTTATAGACATATGAAACATATAATCACATATGGCA
1 AACATATTTATAGACATATGAAACATATAATCACATAAGGCA
14745024 TTAACATTCA
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 40 1.00
ACGTcount: A:0.48, C:0.15, G:0.10, T:0.27
Consensus pattern (42 bp):
AACATATTTATAGACATATGAAACATATAATCACATAAGGCA
Found at i:14745019 original size:19 final size:19
Alignment explanation
Indices: 14744956--14745020 Score: 67
Period size: 21 Copynumber: 3.2 Consensus size: 19
14744946 TTTATAGACC
14744956 TATGAAACATATAATCACA
1 TATGAAACATATAATCACA
* * *
14744975 TAAGGCAAACATATTTATAGACA
1 T-ATG-AAACATA-TAAT-CACA
14744998 TATGAAACATATAATCACA
1 TATGAAACATATAATCACA
14745017 TATG
1 TATG
14745021 GCATTAACAT
Statistics
Matches: 36, Mismatches: 6, Indels: 8
0.72 0.12 0.16
Matches are distributed among these distances:
19 8 0.22
20 5 0.14
21 14 0.39
22 5 0.14
23 4 0.11
ACGTcount: A:0.49, C:0.14, G:0.09, T:0.28
Consensus pattern (19 bp):
TATGAAACATATAATCACA
Found at i:14745200 original size:45 final size:47
Alignment explanation
Indices: 14745134--14745256 Score: 144
Period size: 47 Copynumber: 2.7 Consensus size: 47
14745124 CGGAGGGTGT
* *
14745134 CATGGTGTCTTTCAA-TCATGGTCTTATTTA-TTCT-CGTCTTAATGC
1 CATGGTGTCTTTCAACT-ATGGTCTTATTCATTTCTACGTCGTAATGC
* * * **
14745179 CATGGTGTTTTTCAACTATGGTCTTATACATTTTTACGTCGTGTTGC
1 CATGGTGTCTTTCAACTATGGTCTTATTCATTTCTACGTCGTAATGC
*
14745226 CATAGTGTCTTTCAACTATGGTCTTATTCAT
1 CATGGTGTCTTTCAACTATGGTCTTATTCAT
14745257 CTGACTCATG
Statistics
Matches: 65, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
45 25 0.38
46 4 0.06
47 36 0.55
ACGTcount: A:0.19, C:0.19, G:0.16, T:0.46
Consensus pattern (47 bp):
CATGGTGTCTTTCAACTATGGTCTTATTCATTTCTACGTCGTAATGC
Found at i:14745239 original size:47 final size:45
Alignment explanation
Indices: 14745175--14745295 Score: 136
Period size: 47 Copynumber: 2.7 Consensus size: 45
14745165 TCTCGTCTTA
* * * * *
14745175 ATGCCATGGTGTTTTTCAACTATGGTCTTATACATTTTTACGTCGTG
1 ATGCCATAGTGTCTTTCAACTATGGTCTTATACA-TCTGAC-TCATG
* *
14745222 TTGCCATAGTGTCTTTCAACTATGGTCTTATTCATCTGACTCATG
1 ATGCCATAGTGTCTTTCAACTATGGTCTTATACATCTGACTCATG
* *
14745267 ATGCCATAGTATCTTTC-ATTATGGTCTTA
1 ATGCCATAGTGTCTTTCAACTATGGTCTTA
14745296 CTTGTTAGAA
Statistics
Matches: 64, Mismatches: 10, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
44 11 0.17
45 19 0.30
46 4 0.06
47 30 0.47
ACGTcount: A:0.21, C:0.19, G:0.17, T:0.44
Consensus pattern (45 bp):
ATGCCATAGTGTCTTTCAACTATGGTCTTATACATCTGACTCATG
Found at i:14745358 original size:45 final size:45
Alignment explanation
Indices: 14745223--14745477 Score: 262
Period size: 45 Copynumber: 5.7 Consensus size: 45
14745213 TACGTCGTGT
** * * * *
14745223 TGCCATAGTGTCTTTCAACTATGGTCTTATTCATCT-GACTCATGA
1 TGCCATAACGTCTTTCAGCTATGGTCTTACTCGT-TAGAATCATGA
*** * * **
14745268 TGCCATAGTATCTTTCA-TTATGGTCTTACTTGTTAGAATTGTGA
1 TGCCATAACGTCTTTCAGCTATGGTCTTACTCGTTAGAATCATGA
* *
14745312 TGCCATAACGTCTTTTAGCTATGGTCTTACTCGTTACAATCATGA
1 TGCCATAACGTCTTTCAGCTATGGTCTTACTCGTTAGAATCATGA
* **
14745357 TGCCATAACGTCTTTCAGCTATGGTATTACTCGTTAGAATTGTGA
1 TGCCATAACGTCTTTCAGCTATGGTCTTACTCGTTAGAATCATGA
* * * * *
14745402 TGCCCTAACGTCTTTTAGCTATGGTCTTACTCATTATAATCATTA
1 TGCCATAACGTCTTTCAGCTATGGTCTTACTCGTTAGAATCATGA
* *
14745447 TGCCATAACGTCTTTCAACTATGGTCGTACT
1 TGCCATAACGTCTTTCAGCTATGGTCTTACT
14745478 TATTTCTGAT
Statistics
Matches: 174, Mismatches: 34, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
43 1 0.01
44 31 0.18
45 142 0.82
ACGTcount: A:0.24, C:0.20, G:0.16, T:0.40
Consensus pattern (45 bp):
TGCCATAACGTCTTTCAGCTATGGTCTTACTCGTTAGAATCATGA
Found at i:14745415 original size:90 final size:89
Alignment explanation
Indices: 14745223--14745471 Score: 313
Period size: 90 Copynumber: 2.8 Consensus size: 89
14745213 TACGTCGTGT
** * * * *** *
14745223 TGCCATAGTGTCTTTCAACTATGGTCTTATTCATCTGAC--TCATGATGCCATAGTATCTTTCAT
1 TGCCATAACGTCTTTTAGCTATGGTCTTACTCAT-T-ACAATCATGATGCCATAACGTCTTTCAC
* *
14745286 TATGGTCTTACTTGTTAGAATTGTGA
64 TATGGTATTACTCGTTAGAATTGTGA
*
14745312 TGCCATAACGTCTTTTAGCTATGGTCTTACTCGTTACAATCATGATGCCATAACGTCTTTCAGCT
1 TGCCATAACGTCTTTTAGCTATGGTCTTACTCATTACAATCATGATGCCATAACGTCTTTCA-CT
14745377 ATGGTATTACTCGTTAGAATTGTGA
65 ATGGTATTACTCGTTAGAATTGTGA
* * *
14745402 TGCCCTAACGTCTTTTAGCTATGGTCTTACTCATTATAATCATTATGCCATAACGTCTTTCAACT
1 TGCCATAACGTCTTTTAGCTATGGTCTTACTCATTACAATCATGATGCCATAACGTCTTTC-ACT
14745467 ATGGT
65 ATGGT
14745472 CGTACTTATT
Statistics
Matches: 140, Mismatches: 16, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
87 2 0.01
88 1 0.01
89 48 0.34
90 88 0.63
91 1 0.01
ACGTcount: A:0.24, C:0.20, G:0.16, T:0.40
Consensus pattern (89 bp):
TGCCATAACGTCTTTTAGCTATGGTCTTACTCATTACAATCATGATGCCATAACGTCTTTCACTA
TGGTATTACTCGTTAGAATTGTGA
Found at i:14745495 original size:45 final size:45
Alignment explanation
Indices: 14745311--14745517 Score: 173
Period size: 45 Copynumber: 4.6 Consensus size: 45
14745301 TAGAATTGTG
* * * * * *
14745311 ATGCCATAACGTCTTTTAGCTATGGTCTTACTCGTTACAATCATG
1 ATGCCATAACGTCTTTCAACTATGGTCGTACTCATTATAATCATA
* ** * * ** *
14745356 ATGCCATAACGTCTTTCAGCTATGGTATTACTCGTTAGAATTGTG
1 ATGCCATAACGTCTTTCAACTATGGTCGTACTCATTATAATCATA
* * * * *
14745401 ATGCCCTAACGTCTTTTAGCTATGGTCTTACTCATTATAATCATT
1 ATGCCATAACGTCTTTCAACTATGGTCGTACTCATTATAATCATA
* * *
14745446 ATGCCATAACGTCTTTCAACTATGGTCGTACTTATTTCTGAT-ATA
1 ATGCCATAACGTCTTTCAACTATGGTCGTACTCA-TTATAATCATA
** *
14745491 ATGCCATAATTTCTTTCACCTATGGTC
1 ATGCCATAACGTCTTTCAACTATGGTC
14745518 TTATTCAGTT
Statistics
Matches: 137, Mismatches: 24, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
45 132 0.96
46 5 0.04
ACGTcount: A:0.25, C:0.21, G:0.14, T:0.40
Consensus pattern (45 bp):
ATGCCATAACGTCTTTCAACTATGGTCGTACTCATTATAATCATA
Found at i:14745495 original size:90 final size:90
Alignment explanation
Indices: 14745223--14745520 Score: 255
Period size: 90 Copynumber: 3.3 Consensus size: 90
14745213 TACGTCGTGT
** * * * ***
14745223 TGCCATAGTGTCTTTCAACTATGGTCTTATTCATCTGAC--TCATGATGCCATAGTATCTTTC-A
1 TGCCATAACGTCTTTTAGCTATGGTCTTACTCAT-T-ACAATCATGATGCCATAACGTCTTTCAA
* ** * * *
14745285 TTATGGTCTTACTTGTTAGAATTGTGA
64 CTATGGTAGTACTAGTTAGAATTATAA
* *
14745312 TGCCATAACGTCTTTTAGCTATGGTCTTACTCGTTACAATCATGATGCCATAACGTCTTTCAGCT
1 TGCCATAACGTCTTTTAGCTATGGTCTTACTCATTACAATCATGATGCCATAACGTCTTTCAACT
* * * *
14745377 ATGGTATTACTCGTTAGAATTGTGA
66 ATGGTAGTACTAGTTAGAATTATAA
* * *
14745402 TGCCCTAACGTCTTTTAGCTATGGTCTTACTCATTATAATCATTATGCCATAACGTCTTTCAACT
1 TGCCATAACGTCTTTTAGCTATGGTCTTACTCATTACAATCATGATGCCATAACGTCTTTCAACT
* * *
14745467 ATGGTCGTACTTATTTCTG-A-TATAA
66 ATGGTAGTAC-TAGTT-AGAATTATAA
** * *
14745492 TGCCATAATTTCTTTCACCTATGGTCTTA
1 TGCCATAACGTCTTTTAGCTATGGTCTTA
14745521 TTCAGTTCCA
Statistics
Matches: 174, Mismatches: 30, Indels: 9
0.82 0.14 0.04
Matches are distributed among these distances:
87 2 0.01
88 1 0.01
89 47 0.27
90 119 0.68
91 4 0.02
92 1 0.01
ACGTcount: A:0.24, C:0.20, G:0.15, T:0.41
Consensus pattern (90 bp):
TGCCATAACGTCTTTTAGCTATGGTCTTACTCATTACAATCATGATGCCATAACGTCTTTCAACT
ATGGTAGTACTAGTTAGAATTATAA
Found at i:14746129 original size:11 final size:11
Alignment explanation
Indices: 14746113--14746137 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
14746103 TGATGAGTAA
14746113 ATTATTATTTT
1 ATTATTATTTT
14746124 ATTATTATTTT
1 ATTATTATTTT
14746135 ATT
1 ATT
14746138 GTCTATGGAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (11 bp):
ATTATTATTTT
Found at i:14750327 original size:22 final size:23
Alignment explanation
Indices: 14750278--14750328 Score: 61
Period size: 22 Copynumber: 2.2 Consensus size: 23
14750268 AAATGGATGT
14750278 AAATTTATGATGTTAGTAAGCTGA
1 AAATTTATGATGTTAGT-AGCTGA
*
14750302 AAATTTA-GATGTTACGT-GCTGC
1 AAATTTATGATGTTA-GTAGCTGA
14750324 AAATT
1 AAATT
14750329 ATCATGTCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
22 9 0.36
23 7 0.28
24 9 0.36
ACGTcount: A:0.35, C:0.08, G:0.20, T:0.37
Consensus pattern (23 bp):
AAATTTATGATGTTAGTAGCTGA
Found at i:14751133 original size:50 final size:50
Alignment explanation
Indices: 14751077--14751178 Score: 195
Period size: 50 Copynumber: 2.0 Consensus size: 50
14751067 AAGTAAAGTA
14751077 AAGTTCCATTTTCTGTTACTTGTTAAATGTCAACTGTCCTTGGATGAATT
1 AAGTTCCATTTTCTGTTACTTGTTAAATGTCAACTGTCCTTGGATGAATT
*
14751127 AAGTTCCATTTTCTTTTACTTGTTAAATGTCAACTGTCCTTGGATGAATT
1 AAGTTCCATTTTCTGTTACTTGTTAAATGTCAACTGTCCTTGGATGAATT
14751177 AA
1 AA
14751179 TGGTGAAAAG
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
50 51 1.00
ACGTcount: A:0.25, C:0.16, G:0.15, T:0.44
Consensus pattern (50 bp):
AAGTTCCATTTTCTGTTACTTGTTAAATGTCAACTGTCCTTGGATGAATT
Found at i:14759326 original size:28 final size:29
Alignment explanation
Indices: 14759277--14759331 Score: 85
Period size: 28 Copynumber: 1.9 Consensus size: 29
14759267 CATACATGCT
*
14759277 TATGGCCCACTAGGCCCGAATCACATTCA
1 TATGGCCCACTAGGCCCAAATCACATTCA
*
14759306 TATGG-CCATTAGGCCCAAATCACATT
1 TATGGCCCACTAGGCCCAAATCACATT
14759332 TACAGTCATG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
28 19 0.79
29 5 0.21
ACGTcount: A:0.29, C:0.31, G:0.16, T:0.24
Consensus pattern (29 bp):
TATGGCCCACTAGGCCCAAATCACATTCA
Found at i:14759570 original size:16 final size:16
Alignment explanation
Indices: 14759549--14759587 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
14759539 CCCAACTTTT
14759549 GACTTTTTGGCATTTC
1 GACTTTTTGGCATTTC
*
14759565 GACTTTTTGGTATTTC
1 GACTTTTTGGCATTTC
*
14759581 TACTTTT
1 GACTTTT
14759588 ACCGATCTAC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.13, C:0.15, G:0.15, T:0.56
Consensus pattern (16 bp):
GACTTTTTGGCATTTC
Found at i:14760798 original size:16 final size:16
Alignment explanation
Indices: 14760777--14760807 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
14760767 AAAAATTTAA
14760777 GATTTCGAGATTTTTG
1 GATTTCGAGATTTTTG
*
14760793 GATTTCGATATTTTT
1 GATTTCGAGATTTTT
14760808 AGGGCGTTAC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.19, C:0.06, G:0.19, T:0.55
Consensus pattern (16 bp):
GATTTCGAGATTTTTG
Found at i:14767353 original size:37 final size:37
Alignment explanation
Indices: 14767303--14767381 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
14767293 TTATTACGAA
* * *
14767303 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
14767340 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
14767377 GTCTT
1 GTCTT
14767382 TAGAGCTCAG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:14767578 original size:47 final size:47
Alignment explanation
Indices: 14767500--14768012 Score: 893
Period size: 47 Copynumber: 10.9 Consensus size: 47
14767490 CCCTTCGGGA
* * ** * * *
14767500 CTTATCACATTTATACACTTTCACATCCATCATGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
14767547 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
14767594 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
14767641 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
14767688 CTTATCACATATATACACTTTCACATTTATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
14767735 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
14767782 CTTATCACATATATACACTTTCACATTCATCACATCGGCCGTTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
14767829 CTTATCACATATATACACTTTCACATT-ATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
14767875 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
14767922 CTTATCACATATATACACTTCCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
14767969 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTA
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTA
14768013 CACTTTCACA
Statistics
Matches: 446, Mismatches: 19, Indels: 2
0.96 0.04 0.00
Matches are distributed among these distances:
46 45 0.10
47 401 0.90
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:14768024 original size:29 final size:29
Alignment explanation
Indices: 14767982--14768041 Score: 111
Period size: 29 Copynumber: 2.1 Consensus size: 29
14767972 ATCACATATA
14767982 TACACTTTCACATTCATCACATCGGCCAT
1 TACACTTTCACATTCATCACATCGGCCAT
*
14768011 TACACTTTCACATTTATCACATCGGCCAT
1 TACACTTTCACATTCATCACATCGGCCAT
14768040 TA
1 TA
14768042 GGCCTTATCA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.28, C:0.32, G:0.07, T:0.33
Consensus pattern (29 bp):
TACACTTTCACATTCATCACATCGGCCAT
Found at i:14768030 original size:76 final size:76
Alignment explanation
Indices: 14767935--14768079 Score: 263
Period size: 76 Copynumber: 1.9 Consensus size: 76
14767925 ATCACATATA
14767935 TACACTTCCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATC
1 TACACTTCCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATC
14768000 ACATCGGCCAT
66 ACATCGGCCAT
* * *
14768011 TACACTTTCACATTTATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATT
1 TACACTTCCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATC
14768076 ACAT
66 ACAT
14768080 AGAATCCTAA
Statistics
Matches: 66, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
76 66 1.00
ACGTcount: A:0.30, C:0.30, G:0.07, T:0.33
Consensus pattern (76 bp):
TACACTTCCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATC
ACATCGGCCAT
Found at i:14773397 original size:74 final size:74
Alignment explanation
Indices: 14773287--14773444 Score: 244
Period size: 74 Copynumber: 2.1 Consensus size: 74
14773277 GCCATGCCAC
* * * * * *
14773287 ACGCCCATGTGCTAGGCTGTGTGGTTAATTAATTCAATTTGAAATTAGGTGCAGGTTTCACACGG
1 ACGCCCGTGTTCTAAGCCGTGTGGTGAATTAATTCAATTTGAAATTAGGTGCAGGTTTCACACAG
14773352 CCAAGACAT
66 CCAAGACAT
* *
14773361 ATGCCCGTGTTCTAAGCCGTGTGGTGAATTAATTCAATTTGAAATTAGGTGTAGGTTTCACACAG
1 ACGCCCGTGTTCTAAGCCGTGTGGTGAATTAATTCAATTTGAAATTAGGTGCAGGTTTCACACAG
14773426 CCAAGACAT
66 CCAAGACAT
14773435 ACGCCCGTGT
1 ACGCCCGTGT
14773445 CTCTGCCCGT
Statistics
Matches: 75, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
74 75 1.00
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.30
Consensus pattern (74 bp):
ACGCCCGTGTTCTAAGCCGTGTGGTGAATTAATTCAATTTGAAATTAGGTGCAGGTTTCACACAG
CCAAGACAT
Found at i:14773553 original size:15 final size:16
Alignment explanation
Indices: 14773535--14773567 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
14773525 AGCCTTGTGT
14773535 CACACA-CCGTCTAGA
1 CACACACCCGTCTAGA
*
14773550 CACACACCCGTGTAGA
1 CACACACCCGTCTAGA
14773566 CA
1 CA
14773568 AAATGAAGCC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 6 0.38
16 10 0.62
ACGTcount: A:0.33, C:0.39, G:0.15, T:0.12
Consensus pattern (16 bp):
CACACACCCGTCTAGA
Found at i:14774505 original size:57 final size:57
Alignment explanation
Indices: 14774417--14774543 Score: 182
Period size: 57 Copynumber: 2.2 Consensus size: 57
14774407 ATTGTATAGC
* * *
14774417 AGGATTACCAGTCTAGGCTAAATCCATTATATAACATATTCTCAGAGGGGCTCGACT
1 AGGATTACCAGTCAAAGCCAAATCCATTATATAACATATTCTCAGAGGGGCTCGACT
* ** * *
14774474 AGGATTACTAGTCAAAGCCAAATCCATTATATAATGTATTCTCATAGGGGCTCGATT
1 AGGATTACCAGTCAAAGCCAAATCCATTATATAACATATTCTCAGAGGGGCTCGACT
14774531 AGGATTACCAGTC
1 AGGATTACCAGTC
14774544 CTAGCTAAAC
Statistics
Matches: 61, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
57 61 1.00
ACGTcount: A:0.32, C:0.20, G:0.19, T:0.29
Consensus pattern (57 bp):
AGGATTACCAGTCAAAGCCAAATCCATTATATAACATATTCTCAGAGGGGCTCGACT
Found at i:14778573 original size:15 final size:16
Alignment explanation
Indices: 14778553--14778582 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
14778543 TTTTGCTTCT
14778553 TCTTCCTTC-ACATCA
1 TCTTCCTTCAACATCA
14778568 TCTTCCTTCAACATC
1 TCTTCCTTCAACATC
14778583 TTAACTTGAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.20, C:0.40, G:0.00, T:0.40
Consensus pattern (16 bp):
TCTTCCTTCAACATCA
Found at i:14781487 original size:27 final size:27
Alignment explanation
Indices: 14781419--14781526 Score: 125
Period size: 27 Copynumber: 4.1 Consensus size: 27
14781409 CATGGCTGCT
* *
14781419 AGAACAGATAA-TGT-G-ACAGTCACC
1 AGAACAGATAATTGTGGCAGAGCCACC
*
14781443 AGATACAGATAATCGTGGCAGAGCCACC
1 AGA-ACAGATAATTGTGGCAGAGCCACC
14781471 AGAACAGA-AATATGTGGCAGAGCCACC
1 AGAACAGATAAT-TGTGGCAGAGCCACC
* *
14781498 AGATCAGATAATTGTGGCATAGCCACC
1 AGAACAGATAATTGTGGCAGAGCCACC
14781525 AG
1 AG
14781527 GACGCTTCCT
Statistics
Matches: 72, Mismatches: 6, Indels: 9
0.83 0.07 0.10
Matches are distributed among these distances:
24 3 0.04
25 8 0.11
26 5 0.07
27 43 0.60
28 13 0.18
ACGTcount: A:0.38, C:0.22, G:0.24, T:0.16
Consensus pattern (27 bp):
AGAACAGATAATTGTGGCAGAGCCACC
Found at i:14781631 original size:25 final size:25
Alignment explanation
Indices: 14781603--14781653 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
14781593 ACAGATTTAA
14781603 ATCAACATGCTTTTCAGACAAAATT
1 ATCAACATGCTTTTCAGACAAAATT
14781628 ATCAACATGCTTTTCAGACAAAATT
1 ATCAACATGCTTTTCAGACAAAATT
14781653 A
1 A
14781654 ACCCTAGGGG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.41, C:0.20, G:0.08, T:0.31
Consensus pattern (25 bp):
ATCAACATGCTTTTCAGACAAAATT
Found at i:14783820 original size:38 final size:38
Alignment explanation
Indices: 14783740--14783825 Score: 91
Period size: 38 Copynumber: 2.2 Consensus size: 38
14783730 TATAGGTTAT
* * * * *
14783740 AAAAATTATGAATTGAGTTATAGAAATGTATTTTTATT
1 AAAAATTATGAATTGAGTTATACAAATATATATGTATG
* * *
14783778 AAAAATTGTGAATTGAGTTATACATATATATATGTGTG
1 AAAAATTATGAATTGAGTTATACAAATATATATGTATG
14783816 AAAAAATTAT
1 -AAAAATTAT
14783826 ATATATTAGT
Statistics
Matches: 38, Mismatches: 9, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
38 30 0.79
39 8 0.21
ACGTcount: A:0.44, C:0.01, G:0.14, T:0.41
Consensus pattern (38 bp):
AAAAATTATGAATTGAGTTATACAAATATATATGTATG
Found at i:14788650 original size:25 final size:25
Alignment explanation
Indices: 14788621--14788698 Score: 69
Period size: 25 Copynumber: 3.2 Consensus size: 25
14788611 ATTCTACCTT
14788621 ATCACACATATGCATGTTCACATTC
1 ATCACACATATGCATGTTCACATTC
* *
14788646 AT--CACAT-TGGCCA--TTCGGCCTT-
1 ATCACACATAT-G-CATGTTC-ACATTC
14788668 ATCACACATATGCATGTTCACATTC
1 ATCACACATATGCATGTTCACATTC
14788693 ATCACA
1 ATCACA
14788699 TTGGCCATTG
Statistics
Matches: 40, Mismatches: 4, Indels: 18
0.65 0.06 0.29
Matches are distributed among these distances:
22 6 0.15
23 11 0.28
24 11 0.28
25 12 0.30
ACGTcount: A:0.29, C:0.29, G:0.10, T:0.31
Consensus pattern (25 bp):
ATCACACATATGCATGTTCACATTC
Found at i:14788650 original size:47 final size:47
Alignment explanation
Indices: 14788599--14789024 Score: 681
Period size: 47 Copynumber: 9.1 Consensus size: 47
14788589 TTCCACGTTT
** **
14788599 ATCACATTATCCATTCTACCTTATCACACATATGCATGTTCACATTC
1 ATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTC
14788646 ATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTC
1 ATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTC
* * * *
14788693 ATCACATTGGCCATTGGGCCTTGTCACATATATACATGTTCACATTC
1 ATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTC
*
14788740 ATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTC
1 ATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTC
14788787 ATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTC
1 ATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTC
14788834 ATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTC
1 ATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTC
*
14788881 ATCACATTGGCCATCCGGCCTTATCACACATATGCATGTTCACATTC
1 ATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTC
* * *
14788928 ATCACATTGTCCATTAGGCTTTATCACACATATGCATGTTCACATTC
1 ATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTC
* * * * **
14788975 ATCACATTGGCCATTAGGCCTTATCTCATATATACACATTCACATTC
1 ATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTC
14789022 ATC
1 ATC
14789025 TCATAAAATC
Statistics
Matches: 355, Mismatches: 24, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 355 1.00
ACGTcount: A:0.27, C:0.29, G:0.11, T:0.33
Consensus pattern (47 bp):
ATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTC
Found at i:14788767 original size:22 final size:22
Alignment explanation
Indices: 14788740--14788861 Score: 65
Period size: 22 Copynumber: 5.3 Consensus size: 22
14788730 GTTCACATTC
14788740 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* * *
14788762 ATCACATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
14788786 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
* *
14788809 ATCACACATAT-G-CATGTTC-ACATT
1 AT--CACAT-TGGCCA--TTCGGCCTT
14788833 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
14788856 ATCACA
1 ATCACA
14788862 CATATGCATG
Statistics
Matches: 74, Mismatches: 10, Indels: 32
0.64 0.09 0.28
Matches are distributed among these distances:
22 22 0.30
23 18 0.24
24 18 0.24
25 16 0.22
ACGTcount: A:0.25, C:0.30, G:0.13, T:0.32
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:14791849 original size:16 final size:16
Alignment explanation
Indices: 14791828--14791859 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
14791818 ATTAAGAATG
14791828 TTATTAAATTATATTT
1 TTATTAAATTATATTT
14791844 TTATTAAATTATATTT
1 TTATTAAATTATATTT
14791860 AATAATAATT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (16 bp):
TTATTAAATTATATTT
Found at i:14792126 original size:16 final size:16
Alignment explanation
Indices: 14792105--14792145 Score: 64
Period size: 16 Copynumber: 2.6 Consensus size: 16
14792095 TGAATTACTT
*
14792105 ATTACAGCTCTATTCA
1 ATTACAGCCCTATTCA
*
14792121 ATTACAGCCCTATTCC
1 ATTACAGCCCTATTCA
14792137 ATTACAGCC
1 ATTACAGCC
14792146 AGCCAAACGT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.29, C:0.32, G:0.07, T:0.32
Consensus pattern (16 bp):
ATTACAGCCCTATTCA
Found at i:14801635 original size:28 final size:28
Alignment explanation
Indices: 14801600--14801669 Score: 90
Period size: 28 Copynumber: 2.5 Consensus size: 28
14801590 ATAGTAAGTC
14801600 CGCACACTTAGTGCT-TA-ATAGTCAAACT
1 CGCACACTTAGTGCTATACA-A-TCAAACT
* *
14801628 CGTACACTTAGTGCTATACAATTAAACT
1 CGCACACTTAGTGCTATACAATCAAACT
14801656 CGCACACTTAGTGC
1 CGCACACTTAGTGC
14801670 CAATCTCATT
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
28 33 0.89
29 3 0.08
30 1 0.03
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATACAATCAAACT
Found at i:14805516 original size:78 final size:78
Alignment explanation
Indices: 14805304--14805520 Score: 303
Period size: 78 Copynumber: 2.8 Consensus size: 78
14805294 AGAAAGCATG
* * *
14805304 CGGGACTTTAGGCCCGGATATAATGCCAGCATAAAGCCTGCGGGACTTTAGCCCGGATATAATAC
1 CGGGAC-TTA-GCCCGGATATAATACCAGCATAAAGCCTGCGGGACCTTAGCCCGGATATAACAC
*
14805369 CAGCATAAATGCCTT
64 CAGCACAAATGCCTT
* * *
14805384 CGGGACTTAGCCCGGATATAACACCAGCACAAATGCCTTCGGGA-CTTAGCCCGGATATAACACC
1 CGGGACTTAGCCCGGATATAATACCAGCATAAA-GCCTGCGGGACCTTAGCCCGGATATAACACC
14805448 AGCACAAATGCCTT
65 AGCACAAATGCCTT
* *
14805462 CGGGACTTAGCCCGGATATAATACCAGCATAAAGCCTGC-GGACCTCATGTCCGGATATA
1 CGGGACTTAGCCCGGATATAATACCAGCATAAAGCCTGCGGGACCTTA-GCCCGGATATA
14805521 TTTCTAGTCT
Statistics
Matches: 122, Mismatches: 12, Indels: 8
0.86 0.08 0.06
Matches are distributed among these distances:
76 3 0.02
77 8 0.07
78 93 0.76
79 12 0.10
80 6 0.05
ACGTcount: A:0.29, C:0.28, G:0.23, T:0.20
Consensus pattern (78 bp):
CGGGACTTAGCCCGGATATAATACCAGCATAAAGCCTGCGGGACCTTAGCCCGGATATAACACCA
GCACAAATGCCTT
Found at i:14805520 original size:39 final size:39
Alignment explanation
Indices: 14805304--14805498 Score: 295
Period size: 39 Copynumber: 5.0 Consensus size: 39
14805294 AGAAAGCATG
* *
14805304 CGGGACTTTAGGCCCGGATATAATGCCAGCATAAA-GCCTG
1 CGGGAC-TTA-GCCCGGATATAATACCAGCATAAATGCCTT
14805344 CGGGACTTTAGCCCGGATATAATACCAGCATAAATGCCTT
1 CGGGAC-TTAGCCCGGATATAATACCAGCATAAATGCCTT
* *
14805384 CGGGACTTAGCCCGGATATAACACCAGCACAAATGCCTT
1 CGGGACTTAGCCCGGATATAATACCAGCATAAATGCCTT
* *
14805423 CGGGACTTAGCCCGGATATAACACCAGCACAAATGCCTT
1 CGGGACTTAGCCCGGATATAATACCAGCATAAATGCCTT
14805462 CGGGACTTAGCCCGGATATAATACCAGCATAAA-GCCT
1 CGGGACTTAGCCCGGATATAATACCAGCATAAATGCCT
14805499 GCGGACCTCA
Statistics
Matches: 148, Mismatches: 6, Indels: 4
0.94 0.04 0.03
Matches are distributed among these distances:
38 4 0.03
39 124 0.84
40 20 0.14
ACGTcount: A:0.30, C:0.28, G:0.22, T:0.20
Consensus pattern (39 bp):
CGGGACTTAGCCCGGATATAATACCAGCATAAATGCCTT
Found at i:14810643 original size:18 final size:18
Alignment explanation
Indices: 14810620--14810655 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
14810610 TAACATATAA
14810620 AAGTATATAATACATACC
1 AAGTATATAATACATACC
*
14810638 AAGTATATAATACGTACC
1 AAGTATATAATACATACC
14810656 TGACCAACTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.47, C:0.17, G:0.08, T:0.28
Consensus pattern (18 bp):
AAGTATATAATACATACC
Found at i:14811043 original size:39 final size:39
Alignment explanation
Indices: 14810798--14811021 Score: 299
Period size: 39 Copynumber: 5.8 Consensus size: 39
14810788 CGAGACTTTA
* * * * *
14810798 AGCCCGGATATAATACAAGCATAAA-GCCTGCGAGACTTT
1 AGCCCGGATATAACACCAGCACAAATGCCTTCGGGAC-TT
* *
14810837 AGCCCGGATATAATACCAGCATAAATGCCTTCGGGACTT
1 AGCCCGGATATAACACCAGCACAAATGCCTTCGGGACTT
* * *
14810876 AGCCCCGATATAACACCAGTACAAATGCCTTCGGAACTT
1 AGCCCGGATATAACACCAGCACAAATGCCTTCGGGACTT
14810915 AGCCCGGATATAACACCAGCACAAATGCCTTCGGGACTT
1 AGCCCGGATATAACACCAGCACAAATGCCTTCGGGACTT
14810954 AGCCCGGATATAACACCAGCACAAATGCCTTCGGGACTT
1 AGCCCGGATATAACACCAGCACAAATGCCTTCGGGACTT
** * *
14810993 AGCCTAGATATAATACCAGCATAAA-GCCT
1 AGCCCGGATATAACACCAGCACAAATGCCT
14811022 GCGGACCTCA
Statistics
Matches: 169, Mismatches: 15, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
38 4 0.02
39 156 0.92
40 9 0.05
ACGTcount: A:0.33, C:0.28, G:0.19, T:0.20
Consensus pattern (39 bp):
AGCCCGGATATAACACCAGCACAAATGCCTTCGGGACTT
Found at i:14822339 original size:13 final size:13
Alignment explanation
Indices: 14822321--14822353 Score: 66
Period size: 13 Copynumber: 2.5 Consensus size: 13
14822311 AATTGACATT
14822321 TGTGAAAGTCTCG
1 TGTGAAAGTCTCG
14822334 TGTGAAAGTCTCG
1 TGTGAAAGTCTCG
14822347 TGTGAAA
1 TGTGAAA
14822354 ATTTAACTGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.27, C:0.12, G:0.30, T:0.30
Consensus pattern (13 bp):
TGTGAAAGTCTCG
Found at i:14823389 original size:30 final size:29
Alignment explanation
Indices: 14823355--14823418 Score: 101
Period size: 30 Copynumber: 2.2 Consensus size: 29
14823345 ATGAATCGAA
*
14823355 AGCTTTGGCACTAAGTGTGCAATTTAAACT
1 AGCTTTGGAACTAAGTGTGCAATTT-AACT
*
14823385 AGCTTTGGAACTAAGTGTGCGATTTAACT
1 AGCTTTGGAACTAAGTGTGCAATTTAACT
14823414 AGCTT
1 AGCTT
14823419 CGATTACTTG
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
29 9 0.28
30 23 0.72
ACGTcount: A:0.28, C:0.16, G:0.22, T:0.34
Consensus pattern (29 bp):
AGCTTTGGAACTAAGTGTGCAATTTAACT
Found at i:14825803 original size:50 final size:49
Alignment explanation
Indices: 14825688--14825863 Score: 158
Period size: 50 Copynumber: 3.5 Consensus size: 49
14825678 CTAGTACGCA
* * * ** *
14825688 TAGTAGCCTGCACTTAGTACTACACATGCGACCAACAGTCTGGTACATG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAACAGTATAATACACG
* * *
14825737 TAGTAGCTTGCACTTAGTACAACACACGTGACCTCACCA-TATAATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-C-CAACAGTATAATACACG
* * * ** *
14825787 TAGTAGCCTGCACTTAGTACTACACACGTGATC-ATAGTTTTCGGGTACACA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAACAG-TAT--AATACACG
14825838 TAGTAGCCTGCACTTAGTACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
14825864 TGCGACCTCA
Statistics
Matches: 103, Mismatches: 18, Indels: 10
0.79 0.14 0.08
Matches are distributed among these distances:
47 1 0.01
48 1 0.01
49 29 0.28
50 37 0.36
51 35 0.34
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAACAGTATAATACACG
Found at i:14825863 original size:101 final size:99
Alignment explanation
Indices: 14825688--14825874 Score: 241
Period size: 101 Copynumber: 1.9 Consensus size: 99
14825678 CTAGTACGCA
* * ** *
14825688 TAGTAGCCTGCACTTAGTACTACACATGCGACCAACAGTCTGGTACATGTAGTAGCTTGCACTTA
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAACAGTCGGGTACACATAGTAGCCTGCACTTA
*
14825753 GTACAACACACGTGACCTCACCATATAATACACG
66 GTACAACACACGCGACCTCACCATATAATACACG
* * *
14825787 TAGTAGCCTGCACTTAGTACTACACACGTGATC-ATAGTTTTCGGGTACACATAGTAGCCTGCAC
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAACAG---TCGGGTACACATAGTAGCCTGCAC
* *
14825851 TTAGTACTACACATGCGACCTCAC
63 TTAGTACAACACACGCGACCTCAC
14825875 AATAGATCAT
Statistics
Matches: 74, Mismatches: 11, Indels: 4
0.83 0.12 0.04
Matches are distributed among these distances:
98 3 0.04
99 30 0.41
101 41 0.55
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.26
Consensus pattern (99 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACCAACAGTCGGGTACACATAGTAGCCTGCACTTA
GTACAACACACGCGACCTCACCATATAATACACG
Found at i:14833694 original size:30 final size:29
Alignment explanation
Indices: 14833658--14833721 Score: 103
Period size: 30 Copynumber: 2.2 Consensus size: 29
14833648 ATGAATCGAA
14833658 AGCTTT-GACACTAAGTGTGCGATTTAAACT
1 AGCTTTGGA-ACTAAGTGTGCGATTT-AACT
14833688 AGCTTTGGAACTAAGTGTGCGATTTAACT
1 AGCTTTGGAACTAAGTGTGCGATTTAACT
14833717 AGCTT
1 AGCTT
14833722 CGATTACTTG
Statistics
Matches: 33, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
29 9 0.27
30 22 0.67
31 2 0.06
ACGTcount: A:0.28, C:0.16, G:0.22, T:0.34
Consensus pattern (29 bp):
AGCTTTGGAACTAAGTGTGCGATTTAACT
Found at i:14841195 original size:20 final size:21
Alignment explanation
Indices: 14841163--14841208 Score: 60
Period size: 20 Copynumber: 2.3 Consensus size: 21
14841153 AGCACAAGTA
*
14841163 TTCA-TAAATTTTTAGAATTT
1 TTCATTAAATTTTTAGAACTT
*
14841183 TTCATTAAA-TTTTATAACTT
1 TTCATTAAATTTTTAGAACTT
14841203 TTCATT
1 TTCATT
14841209 TTAGTCCCTA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
20 19 0.83
21 4 0.17
ACGTcount: A:0.33, C:0.09, G:0.02, T:0.57
Consensus pattern (21 bp):
TTCATTAAATTTTTAGAACTT
Found at i:14848551 original size:65 final size:65
Alignment explanation
Indices: 14848447--14848575 Score: 204
Period size: 65 Copynumber: 2.0 Consensus size: 65
14848437 CTCTGAGAAT
* * * * * *
14848447 GAGGTTGCATTTTTAGTACTGTATTTTACCTATAGATTGATGGTTAGTTTGAGAGAGATTCAGAC
1 GAGGTTGCATTTTTAGTACTGCATTTCACCTACAGATTGATGGTCAGTCTAAGAGAGATTCAGAC
14848512 GAGGTTGCATTTTTAGTACTGCATTTCACCTACAGATTGATGGTCAGTCTAAGAGAGATTCAGA
1 GAGGTTGCATTTTTAGTACTGCATTTCACCTACAGATTGATGGTCAGTCTAAGAGAGATTCAGA
14848576 TTTTTAATGG
Statistics
Matches: 58, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
65 58 1.00
ACGTcount: A:0.27, C:0.12, G:0.24, T:0.36
Consensus pattern (65 bp):
GAGGTTGCATTTTTAGTACTGCATTTCACCTACAGATTGATGGTCAGTCTAAGAGAGATTCAGAC
Found at i:14851694 original size:79 final size:82
Alignment explanation
Indices: 14851583--14851767 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
14851573 GCTACTCGTT
* * *
14851583 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAATTGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
14851646 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
14851663 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
14851726 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
14851743 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
14851768 CATCATTCAA
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.59
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:14851767 original size:40 final size:40
Alignment explanation
Indices: 14851564--14851767 Score: 229
Period size: 40 Copynumber: 5.1 Consensus size: 40
14851554 CGGAATTTAA
** *
14851564 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
14851604 CCGGTTATAGTAACTCGCACAATTGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
14851644 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
14851683 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
14851723 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
14851763 CCGGA
1 CCGGA
14851768 CATCATTCAA
Statistics
Matches: 139, Mismatches: 18, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.24
40 92 0.66
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:14853697 original size:48 final size:47
Alignment explanation
Indices: 14853626--14854039 Score: 440
Period size: 48 Copynumber: 8.6 Consensus size: 47
14853616 AAATAAAGTA
* * **
14853626 CCAATGCCATGTCCCAGACATGGTCTTACAT-GAATCTACATATCATTT
1 CCAATGCCATGTCCCAGACATGGTCTTACATGGCA-C-ATATATCATCG
14853674 CCAATGCCATGTCCCAGACATGGTCTTACAATGGCACATATATCATCG
1 CCAATGCCATGTCCCAGACATGGTCTTAC-ATGGCACATATATCATCG
**
14853722 CTGATGCCATGTCCCAGACATGGTCTTACACTGGCACATATATCATCG
1 CCAATGCCATGTCCCAGACATGGTCTTACA-TGGCACATATATCATCG
* * *
14853770 CTAATGCCATGTCCCAGACATGGTCTTACACAGGCACATATATCGTCG
1 CCAATGCCATGTCCCAGACATGGTCTTACA-TGGCACATATATCATCG
* * * * *
14853818 CCGATGCCATATCCTAGACAT-GTCTTACACAGGCACATATATCATTG
1 CCAATGCCATGTCCCAGACATGGTCTTACA-TGGCACATATATCATCG
* * *
14853865 CCGATGTCATGTCCCAGACATGGTCTTACATAGGCACATATACCATCG
1 CCAATGCCATGTCCCAGACATGGTCTTACAT-GGCACATATATCATCG
* * * *
14853913 TCGATGCCATGTCCCAAACATGGTCTTACACAGGCACATATATCATCG
1 CCAATGCCATGTCCCAGACATGGTCTTACA-TGGCACATATATCATCG
* * * * *
14853961 TCGATGCCATGTCCCCGACATGGTCTTACACAGGCACACT-TCTCGGAT-G
1 CCAATGCCATGTCCCAGACATGGTCTTACA-TGGCACA-TATATC--ATCG
* *
14854010 CCGATGCCATGTCCCAGACATGGACTTACA
1 CCAATGCCATGTCCCAGACATGGTCTTACA
14854040 CGGAATCTCA
Statistics
Matches: 325, Mismatches: 32, Indels: 17
0.87 0.09 0.05
Matches are distributed among these distances:
47 43 0.13
48 246 0.76
49 32 0.10
50 4 0.01
ACGTcount: A:0.27, C:0.29, G:0.18, T:0.26
Consensus pattern (47 bp):
CCAATGCCATGTCCCAGACATGGTCTTACATGGCACATATATCATCG
Found at i:14853793 original size:96 final size:96
Alignment explanation
Indices: 14853629--14854040 Score: 521
Period size: 96 Copynumber: 4.3 Consensus size: 96
14853619 TAAAGTACCA
* * * **
14853629 ATGCCATGTCCCAGACATGGTCTT--ACATGAATCTACATATCATTTCCAATGCCATGTCCCAGA
1 ATGCCATGTCCCAGACATGGTCTTACACAGGCA-C-ATATATCATCGCCAATGCCATGTCCCAGA
*
14853692 CATGGTCTTACA-ATGGCACATATATCATCGCTG
64 CATGGTCTTACACA-GGCACATATATCATCGCCG
* *
14853725 ATGCCATGTCCCAGACATGGTCTTACACTGGCACATATATCATCGCTAATGCCATGTCCCAGACA
1 ATGCCATGTCCCAGACATGGTCTTACACAGGCACATATATCATCGCCAATGCCATGTCCCAGACA
*
14853790 TGGTCTTACACAGGCACATATATCGTCGCCG
66 TGGTCTTACACAGGCACATATATCATCGCCG
* * * * *
14853821 ATGCCATATCCTAGACAT-GTCTTACACAGGCACATATATCATTGCCGATGTCATGTCCCAGACA
1 ATGCCATGTCCCAGACATGGTCTTACACAGGCACATATATCATCGCCAATGCCATGTCCCAGACA
* * *
14853885 TGGTCTTACATAGGCACATATACCATCGTCG
66 TGGTCTTACACAGGCACATATATCATCGCCG
* * * *
14853916 ATGCCATGTCCCAAACATGGTCTTACACAGGCACATATATCATCGTCGATGCCATGTCCCCGACA
1 ATGCCATGTCCCAGACATGGTCTTACACAGGCACATATATCATCGCCAATGCCATGTCCCAGACA
*
14853981 TGGTCTTACACAGGCACACT-TCTCGGAT-GCCG
66 TGGTCTTACACAGGCACA-TATATC--ATCGCCG
*
14854013 ATGCCATGTCCCAGACATGGACTTACAC
1 ATGCCATGTCCCAGACATGGTCTTACAC
14854041 GGAATCTCAT
Statistics
Matches: 276, Mismatches: 33, Indels: 13
0.86 0.10 0.04
Matches are distributed among these distances:
95 83 0.30
96 155 0.56
97 32 0.12
98 6 0.02
ACGTcount: A:0.27, C:0.29, G:0.18, T:0.26
Consensus pattern (96 bp):
ATGCCATGTCCCAGACATGGTCTTACACAGGCACATATATCATCGCCAATGCCATGTCCCAGACA
TGGTCTTACACAGGCACATATATCATCGCCG
Found at i:14870401 original size:40 final size:40
Alignment explanation
Indices: 14870323--14870618 Score: 456
Period size: 40 Copynumber: 7.5 Consensus size: 40
14870313 AAACCAAGTA
* **
14870323 CCTTCGGGAATTAG-CCGGATATAGCT-ACTCGCTTAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
14870362 CCTTCGGGATTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
14870402 CCTTC-GGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
14870441 CCTTCGGGACTTAGCCCGGATATAGTAACTCGTACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
14870481 CCTTCGGGACTTAGCCCGGATATAGTAACTCGTACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
14870521 CCTTCAGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
14870561 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAAT-
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
14870600 ACTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
14870619 TTATCATCCG
Statistics
Matches: 242, Mismatches: 12, Indels: 6
0.93 0.05 0.02
Matches are distributed among these distances:
39 69 0.29
40 173 0.71
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:14874695 original size:40 final size:40
Alignment explanation
Indices: 14874618--14874879 Score: 375
Period size: 40 Copynumber: 6.6 Consensus size: 40
14874608 AATCCAAGTA
* ** *
14874618 CCTTCGGGAATTAG-CCGAATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGTTATAG-TAACTCGCACAAATG
* *
14874657 CCTTCGGGATTTAGCCCGGTTATAGTAACTCGTACAAATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
*
14874697 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
* * *
14874737 CCTTCGGGACTTAGCCCAGATATAGTAACTCGTACAAATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
*
14874777 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATA
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
** *
14874817 TTTTCGGGACTTAGCCCGGTTATAGTAACTTGCACAAATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
14874857 CCTTCGGGACTTAGCCCGGTTAT
1 CCTTCGGGACTTAGCCCGGTTAT
14874880 CATCCGAATA
Statistics
Matches: 201, Mismatches: 20, Indels: 3
0.90 0.09 0.01
Matches are distributed among these distances:
39 14 0.07
40 187 0.93
ACGTcount: A:0.26, C:0.25, G:0.22, T:0.27
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
Found at i:14879504 original size:39 final size:39
Alignment explanation
Indices: 14879450--14879573 Score: 176
Period size: 39 Copynumber: 3.2 Consensus size: 39
14879440 ATTTGAAAAT
* *
14879450 TATATCTGGACTTAAAGTTCGCAGGCTATATGCGGGAAA
1 TATATCCGGACTTAAAGTCCGCAGGCTATATGCGGGAAA
*
14879489 TATATCCGAACTTAAAGTCCGCAGGCTATATGCGGGAAA
1 TATATCCGGACTTAAAGTCCGCAGGCTATATGCGGGAAA
* * * **
14879528 TATATCCGGACTTCAGGTCCGCAGGCTATGTGCTAGAAA
1 TATATCCGGACTTAAAGTCCGCAGGCTATATGCGGGAAA
14879567 TATATCC
1 TATATCC
14879574 ATGCTTAAAG
Statistics
Matches: 76, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 76 1.00
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.27
Consensus pattern (39 bp):
TATATCCGGACTTAAAGTCCGCAGGCTATATGCGGGAAA
Found at i:14879581 original size:78 final size:79
Alignment explanation
Indices: 14879450--14879594 Score: 186
Period size: 78 Copynumber: 1.8 Consensus size: 79
14879440 ATTTGAAAAT
* * * *
14879450 TATATCTGGACTTAAAGTTCGCAGGCTATATGCGGGAAATATATCCGAACTTAAAGT-CCGCAGG
1 TATATCCGGACTTAAAGTCCGCAGGCTATATGCGAGAAATATATCCGAACTTAAAGTACCGAAGG
14879514 CTATATGCGGGAAA
66 CTATATGCGGGAAA
* * * * *
14879528 TATATCCGGACTTCAGGTCCGCAGGCTATGTGCTAGAAATATATCC-ATGCTTAAAGTACCGAAG
1 TATATCCGGACTTAAAGTCCGCAGGCTATATGCGAGAAATATATCCGA-ACTTAAAGTACCGAAG
14879592 GCT
65 GCT
14879595 TAGTGCTAGT
Statistics
Matches: 56, Mismatches: 9, Indels: 3
0.82 0.13 0.04
Matches are distributed among these distances:
77 1 0.02
78 47 0.84
79 8 0.14
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.26
Consensus pattern (79 bp):
TATATCCGGACTTAAAGTCCGCAGGCTATATGCGAGAAATATATCCGAACTTAAAGTACCGAAGG
CTATATGCGGGAAA
Found at i:14886306 original size:39 final size:39
Alignment explanation
Indices: 14886249--14886385 Score: 170
Period size: 39 Copynumber: 3.5 Consensus size: 39
14886239 ATTTGAAAAT
* * *
14886249 TATATCTGGACTTGAAGTCCGGAGGCTATATGCGGGAAA
1 TATATCCGGACTTCAAGTCCGCAGGCTATATGCGGGAAA
*
14886288 TATATTCGGAC-TCAAAGTCCGCAGGCTATATGCGGGAAA
1 TATATCCGGACTTC-AAGTCCGCAGGCTATATGCGGGAAA
* * *
14886327 TATATCCGGACTTCAGGTCCGCAGGCTATGTGCTGGAAA
1 TATATCCGGACTTCAAGTCCGCAGGCTATATGCGGGAAA
*
14886366 TATATCCAGG-CTTAAAGTCC
1 TATATCC-GGACTTCAAGTCC
14886386 CGAAGGCTTA
Statistics
Matches: 85, Mismatches: 10, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
38 1 0.01
39 80 0.94
40 4 0.05
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (39 bp):
TATATCCGGACTTCAAGTCCGCAGGCTATATGCGGGAAA
Found at i:14892352 original size:13 final size:13
Alignment explanation
Indices: 14892334--14892360 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
14892324 GGAGGAATCG
14892334 CACACGGGCGTGT
1 CACACGGGCGTGT
14892347 CACACGGGCGTGT
1 CACACGGGCGTGT
14892360 C
1 C
14892361 CCTGCCGAGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.33, G:0.37, T:0.15
Consensus pattern (13 bp):
CACACGGGCGTGT
Found at i:14913276 original size:22 final size:22
Alignment explanation
Indices: 14913246--14913295 Score: 73
Period size: 22 Copynumber: 2.2 Consensus size: 22
14913236 CATTATCTTA
14913246 ATTTGTAGGAATATTCTGTAAAT
1 ATTT-TAGGAATATTCTGTAAAT
* *
14913269 ATTTTAGGAATATTTTGTAGAT
1 ATTTTAGGAATATTCTGTAAAT
14913291 ATTTT
1 ATTTT
14913296 TTTTTATTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
22 21 0.84
23 4 0.16
ACGTcount: A:0.32, C:0.02, G:0.16, T:0.50
Consensus pattern (22 bp):
ATTTTAGGAATATTCTGTAAAT
Found at i:14917874 original size:22 final size:22
Alignment explanation
Indices: 14917846--14917890 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
14917836 AGGGGGAGTG
14917846 TAGGAATATTCTGTAAATATTT
1 TAGGAATATTCTGTAAATATTT
* *
14917868 TAGGAATATTTTGTAGATATTT
1 TAGGAATATTCTGTAAATATTT
14917890 T
1 T
14917891 TTTTTATTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.33, C:0.02, G:0.16, T:0.49
Consensus pattern (22 bp):
TAGGAATATTCTGTAAATATTT
Done.