Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 82679320
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4050000 characters in sequence are not A, C, G, or T
File 53 of 255
Found at i:14922485 original size:2 final size:2
Alignment explanation
Indices: 14922478--14923055 Score: 249
Period size: 2 Copynumber: 296.5 Consensus size: 2
14922468 GTGAAAATAA
14922478 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
* * * * * *
14922520 AG AG AG AG GG AG GG GG AG GG AG AG -G AG AG GG A- AG TG -G AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
* * * * * * *
14922559 AG AG -G GG AG AG GG AG AG GG AG GG GG AG AG AG GG AG TG -G TAG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG -AG
* * * * * * * * *
14922600 AG GG GG AG AG GG GG AG -G GG AG AG GG AG AG GG AG AG -G GG GG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
* * * * * *
14922640 AG AG AG AG TG GG AG AG GG GG AG AG AG AG GG GG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
* * * * * * *
14922682 AG GG AG AG A- AG -G AG TG GG AG AG TG GG AG AG AG AG TG GG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
* * * * *
14922722 AG GG AG AG AG -G GG GG AG AG AG TG GG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
* * * * * * * * * *
14922763 AG AG AA AG AG TG TG TG TG TG TG TG AG -G GG AG AG AG AG TG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
* * * * *
14922804 AG AG GG AA AG AG AG GG AG AG AG AG GG AG GG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
* * * *
14922846 AG AG AG GG GG AG AT AG AG AG -G CAG AG AG AG AG GG AG A- AG -G
1 AG AG AG AG AG AG AG AG AG AG AG -AG AG AG AG AG AG AG AG AG AG
* * * *
14922886 AG -G CAG AG AG AG AG AG GG AG GG AG AA AG AT AG AG AG AG AG AG
1 AG AG -AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
* * * * * * * *
14922928 GG AG A- AG -G AG -G GG AG AG AG AG GG GG AA ATG -G GG AA AG GG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A-G AG AG AG AG AG
* * * * * *
14922967 GG AG GG AG AG AG AG AG AG AG GG AG AG AG AG AG GG AG GG AA AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
* * * * *
14923009 AG GG AG GG AG AG AG GG GG AG AG AG AG GG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
14923051 AG AG A
1 AG AG A
14923056 AAGGAGATGA
Statistics
Matches: 439, Mismatches: 114, Indels: 46
0.73 0.19 0.08
Matches are distributed among these distances:
1 19 0.04
2 417 0.95
3 3 0.01
ACGTcount: A:0.37, C:0.00, G:0.59, T:0.03
Consensus pattern (2 bp):
AG
Found at i:14923369 original size:29 final size:28
Alignment explanation
Indices: 14923320--14923374 Score: 67
Period size: 29 Copynumber: 1.9 Consensus size: 28
14923310 TACTATTAGA
*
14923320 TATATTTATAATATATGTTACTAAATTAT
1 TATATTTATAATATATATTAC-AAATTAT
*
14923349 TATATTTA-ATTATAATATTACAAATT
1 TATATTTATAATAT-ATATTACAAATT
14923375 TCAAGATATT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
28 9 0.39
29 14 0.61
ACGTcount: A:0.44, C:0.04, G:0.02, T:0.51
Consensus pattern (28 bp):
TATATTTATAATATATATTACAAATTAT
Found at i:14923753 original size:16 final size:16
Alignment explanation
Indices: 14923734--14923777 Score: 61
Period size: 16 Copynumber: 2.8 Consensus size: 16
14923724 ATTATAGCTT
*
14923734 TATTCCATTACAACTC
1 TATTCAATTACAACTC
*
14923750 TATTCAATTACAGCTC
1 TATTCAATTACAACTC
*
14923766 TATTTAATTACA
1 TATTCAATTACA
14923778 GCCTTATTTC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 25 1.00
ACGTcount: A:0.34, C:0.23, G:0.02, T:0.41
Consensus pattern (16 bp):
TATTCAATTACAACTC
Found at i:14923778 original size:16 final size:16
Alignment explanation
Indices: 14923740--14923794 Score: 67
Period size: 16 Copynumber: 3.4 Consensus size: 16
14923730 GCTTTATTCC
* *
14923740 ATTACAACTCTATTCA
1 ATTACAGCTCTATTTA
14923756 ATTACAGCTCTATTTA
1 ATTACAGCTCTATTTA
*
14923772 ATTACAGC-CTTATTTC
1 ATTACAGCTC-TATTTA
14923788 ATTACAG
1 ATTACAG
14923795 TGAACCAAAC
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
15 1 0.03
16 34 0.97
ACGTcount: A:0.33, C:0.22, G:0.05, T:0.40
Consensus pattern (16 bp):
ATTACAGCTCTATTTA
Found at i:14927385 original size:38 final size:38
Alignment explanation
Indices: 14927334--14927409 Score: 134
Period size: 38 Copynumber: 2.0 Consensus size: 38
14927324 TCGTGCCGAA
*
14927334 GGTCGTAGTAATAGTCGTGCCCATGACTCCAATCTTAC
1 GGTCGTAGCAATAGTCGTGCCCATGACTCCAATCTTAC
*
14927372 GGTCGTAGCAATAGTTGTGCCCATGACTCCAATCTTAC
1 GGTCGTAGCAATAGTCGTGCCCATGACTCCAATCTTAC
14927410 CTGCAAAATT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 36 1.00
ACGTcount: A:0.24, C:0.26, G:0.21, T:0.29
Consensus pattern (38 bp):
GGTCGTAGCAATAGTCGTGCCCATGACTCCAATCTTAC
Found at i:14928376 original size:12 final size:11
Alignment explanation
Indices: 14928359--14928408 Score: 59
Period size: 10 Copynumber: 4.6 Consensus size: 11
14928349 CTAATTTAAT
14928359 ATAAAATCAAAA
1 ATAAAAT-AAAA
14928371 ATAAAATAAAA
1 ATAAAATAAAA
*
14928382 ATAAAA-ATAA
1 ATAAAATAAAA
*
14928392 ATGAAAT-AAA
1 ATAAAATAAAA
14928402 ATAAAAT
1 ATAAAAT
14928409 TTTCCTAGGC
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
10 16 0.48
11 10 0.30
12 7 0.21
ACGTcount: A:0.76, C:0.02, G:0.02, T:0.20
Consensus pattern (11 bp):
ATAAAATAAAA
Found at i:14928381 original size:17 final size:16
Alignment explanation
Indices: 14928359--14928408 Score: 59
Period size: 15 Copynumber: 3.1 Consensus size: 16
14928349 CTAATTTAAT
14928359 ATAAAATCAAAAATAAA
1 ATAAAAT-AAAAATAAA
14928376 ATAAAAATAAAAAT-AA
1 AT-AAAATAAAAATAAA
*
14928392 ATGAAAT-AAAATAAA
1 ATAAAATAAAAATAAA
14928407 AT
1 AT
14928409 TTTCCTAGGC
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
14 5 0.17
15 8 0.27
16 4 0.13
17 8 0.27
18 5 0.17
ACGTcount: A:0.76, C:0.02, G:0.02, T:0.20
Consensus pattern (16 bp):
ATAAAATAAAAATAAA
Found at i:14929074 original size:84 final size:84
Alignment explanation
Indices: 14928933--14929099 Score: 289
Period size: 84 Copynumber: 2.0 Consensus size: 84
14928923 CGTAAGGCAA
* *
14928933 GACGTGCCAACCGTAGAACGATAATGAATTTAACAATATTTGTCCCTGTCCTACTCCATTGCCAA
1 GACGTGCCAACCGTAGAACAATAATGAATTTAACAATATTTATCCCTGTCCTACTCCATTGCCAA
14928998 TCCCTAAAAACAATTGCAG
66 TCCCTAAAAACAATTGCAG
* *
14929017 GACGTGCCAACCGTAGAACAATAATGGATTTAATAATATTTATCCCTGTCCTACTCCATTGCCAA
1 GACGTGCCAACCGTAGAACAATAATGAATTTAACAATATTTATCCCTGTCCTACTCCATTGCCAA
*
14929082 TCCCTAAATACAATTGCA
66 TCCCTAAAAACAATTGCA
14929100 CATACAGAAG
Statistics
Matches: 78, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
84 78 1.00
ACGTcount: A:0.34, C:0.26, G:0.13, T:0.28
Consensus pattern (84 bp):
GACGTGCCAACCGTAGAACAATAATGAATTTAACAATATTTATCCCTGTCCTACTCCATTGCCAA
TCCCTAAAAACAATTGCAG
Found at i:14932288 original size:22 final size:23
Alignment explanation
Indices: 14932236--14932291 Score: 71
Period size: 22 Copynumber: 2.5 Consensus size: 23
14932226 ATATGATCTG
**
14932236 AAAAGAAGAAATAAAAAAATTGT
1 AAAAGAAGAAATAAAAAAATAAT
*
14932259 AATA-AAGAAAT-AAAAAATAAT
1 AAAAGAAGAAATAAAAAAATAAT
14932280 AAAAGAAGAAAT
1 AAAAGAAGAAAT
14932292 TTGAGAATAA
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
21 11 0.39
22 14 0.50
23 3 0.11
ACGTcount: A:0.73, C:0.00, G:0.11, T:0.16
Consensus pattern (23 bp):
AAAAGAAGAAATAAAAAAATAAT
Found at i:14932341 original size:18 final size:18
Alignment explanation
Indices: 14932298--14932347 Score: 59
Period size: 17 Copynumber: 2.8 Consensus size: 18
14932288 AAATTTGAGA
*
14932298 ATAAAAAAATAA-AAATC
1 ATAAATAAATAAGAAATC
14932315 ATAAATAAATAAGAAAT-
1 ATAAATAAATAAGAAATC
*
14932332 ATAAATTAAAAAAGAA
1 ATAAA-TAAATAAGAA
14932348 CAAAGTGGAA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
17 16 0.55
18 13 0.45
ACGTcount: A:0.74, C:0.02, G:0.04, T:0.20
Consensus pattern (18 bp):
ATAAATAAATAAGAAATC
Found at i:14945635 original size:40 final size:40
Alignment explanation
Indices: 14945591--14945717 Score: 97
Period size: 40 Copynumber: 3.3 Consensus size: 40
14945581 ACTAGCTCGG
14945591 TAAACCGACAAATATAATGGTGTGCCCAGCACTAGTCAAA
1 TAAACCGACAAATATAATGGTGTGCCCAGCACTAGTCAAA
* * * *
14945631 TAAACTGAC------AAGGGT-TGCACCCAGCGCTAGTCCAA
1 TAAACCGACAAATATAATGGTGTG--CCCAGCACTAGTCAAA
* * * * *
14945666 TAAACTGATAAATATAATGATGTGCCTAGCACTAGTCGAA
1 TAAACCGACAAATATAATGGTGTGCCCAGCACTAGTCAAA
*
14945706 TAAATCGACAAA
1 TAAACCGACAAA
14945718 GATTGCACCC
Statistics
Matches: 65, Mismatches: 13, Indels: 18
0.68 0.14 0.19
Matches are distributed among these distances:
33 2 0.03
34 5 0.08
35 22 0.34
40 30 0.46
41 4 0.06
42 2 0.03
ACGTcount: A:0.39, C:0.21, G:0.18, T:0.21
Consensus pattern (40 bp):
TAAACCGACAAATATAATGGTGTGCCCAGCACTAGTCAAA
Found at i:14945679 original size:75 final size:75
Alignment explanation
Indices: 14945591--14945730 Score: 201
Period size: 75 Copynumber: 1.9 Consensus size: 75
14945581 ACTAGCTCGG
* * *
14945591 TAAACCGACAAATATAATGGTGTGCCCAGCACTAGTCAAATAAA-CTGACAAGGGTTGCACCCAG
1 TAAACCGACAAATATAATGATGTGCCCAGCACTAGTCAAATAAATC-GACAAAGATTGCACCCAG
14945655 CGCTAGTCCAA
65 CGCTAGTCCAA
* * * *
14945666 TAAACTGATAAATATAATGATGTGCCTAGCACTAGTCGAATAAATCGACAAAGATTGCACCCAGC
1 TAAACCGACAAATATAATGATGTGCCCAGCACTAGTCAAATAAATCGACAAAGATTGCACCCAGC
14945731 ACTGTCAGAT
Statistics
Matches: 57, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
75 56 0.98
76 1 0.02
ACGTcount: A:0.38, C:0.23, G:0.19, T:0.21
Consensus pattern (75 bp):
TAAACCGACAAATATAATGATGTGCCCAGCACTAGTCAAATAAATCGACAAAGATTGCACCCAGC
GCTAGTCCAA
Found at i:14945820 original size:35 final size:35
Alignment explanation
Indices: 14945694--14945820 Score: 91
Period size: 35 Copynumber: 3.7 Consensus size: 35
14945684 GATGTGCCTA
* * * * *
14945694 GCACTAGTCGAATAAATCGACAA-AGATTGCACCCA
1 GCACTAGTCGGATAAACCGACAATA-ATTGCGCACT
* *
14945729 GCACT-GTCAGAT-AACCGACAATAATTGTGCACT
1 GCACTAGTCGGATAAACCGACAATAATTGCGCACT
* * * *
14945762 GCACTAGTTGGATATACCAACAATGAGTTGCGC-CT
1 GCACTAGTCGGATAAACCGACAAT-AATTGCGCACT
* *
14945797 GCGCTAGTCGGGTAAACCGACAAT
1 GCACTAGTCGGATAAACCGACAAT
14945821 TTCGATTGCA
Statistics
Matches: 70, Mismatches: 18, Indels: 8
0.73 0.19 0.08
Matches are distributed among these distances:
33 19 0.27
34 11 0.16
35 34 0.49
36 6 0.09
ACGTcount: A:0.33, C:0.24, G:0.21, T:0.21
Consensus pattern (35 bp):
GCACTAGTCGGATAAACCGACAATAATTGCGCACT
Found at i:14948895 original size:48 final size:48
Alignment explanation
Indices: 14948824--14949002 Score: 268
Period size: 48 Copynumber: 3.7 Consensus size: 48
14948814 ATGGAAACAG
* * * * * *
14948824 TATGTGATCCCGTATAAGACCATGTTTGGAACATGGCATCAACATCGT
1 TATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAACATTGT
**
14948872 TATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGT
1 TATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAACATTGT
*
14948920 TATGTGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAACATTGT
1 TATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAACATTGT
*
14948968 TACGTGAGCCAGTGTAAGACCATGTCTGGGACATG
1 TATGTGAGCCAGTGTAAGACCATGTCTGGGACATG
14949003 ACATTGGCAT
Statistics
Matches: 118, Mismatches: 13, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
48 118 1.00
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.27
Consensus pattern (48 bp):
TATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAACATTGT
Found at i:14948943 original size:96 final size:96
Alignment explanation
Indices: 14948838--14949012 Score: 296
Period size: 96 Copynumber: 1.8 Consensus size: 96
14948828 TGATCCCGTA
* *
14948838 TAAGACCATGTTTGGAACATGGCATCAACATCGTTATGTGAGCCAGTGTAAGACCATGTCTGGGA
1 TAAGACCATGTCTGGAACATGGCATCAACATCGTTACGTGAGCCAGTGTAAGACCATGTCTGGGA
*
14948903 CATGGCATCGGCATTGTTATGTGAGCTAGTG
66 CATGACATCGGCATTGTTATGTGAGCTAGTG
* *
14948934 TAAGACCATGTCTGGGACATGGCATCAACATTGTTACGTGAGCCAGTGTAAGACCATGTCTGGGA
1 TAAGACCATGTCTGGAACATGGCATCAACATCGTTACGTGAGCCAGTGTAAGACCATGTCTGGGA
*
14948999 CATGACATTGGCAT
66 CATGACATCGGCAT
14949013 GAGGCATCGT
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
96 73 1.00
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (96 bp):
TAAGACCATGTCTGGAACATGGCATCAACATCGTTACGTGAGCCAGTGTAAGACCATGTCTGGGA
CATGACATCGGCATTGTTATGTGAGCTAGTG
Found at i:14958355 original size:18 final size:19
Alignment explanation
Indices: 14958318--14958355 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
14958308 ATATTTGAAA
* *
14958318 GTTAAATTTAGTGAATTAT
1 GTTAAATTAAATGAATTAT
14958337 GTTAAATTAAATG-ATTAT
1 GTTAAATTAAATGAATTAT
14958355 G
1 G
14958356 GTGCCAAGTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
18 6 0.35
19 11 0.65
ACGTcount: A:0.39, C:0.00, G:0.16, T:0.45
Consensus pattern (19 bp):
GTTAAATTAAATGAATTAT
Found at i:14960632 original size:28 final size:28
Alignment explanation
Indices: 14960600--14960655 Score: 103
Period size: 28 Copynumber: 2.0 Consensus size: 28
14960590 TGTGTAAGAG
14960600 AATGAACGCTTTGAAATATGAATAAAAT
1 AATGAACGCTTTGAAATATGAATAAAAT
*
14960628 AATGAACTCTTTGAAATATGAATAAAAT
1 AATGAACGCTTTGAAATATGAATAAAAT
14960656 TTTATGGCTC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.50, C:0.07, G:0.12, T:0.30
Consensus pattern (28 bp):
AATGAACGCTTTGAAATATGAATAAAAT
Found at i:14967668 original size:97 final size:97
Alignment explanation
Indices: 14967514--14967691 Score: 245
Period size: 97 Copynumber: 1.8 Consensus size: 97
14967504 GATAAGATGT
* *
14967514 CGATGCCATGTCCCAGGCATGGTCTTACACTGGCTAGCACATCAAAGTCGATGCCATGT-CCAGG
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTAGCACATCAAAGTCAATGCCATGTCCCA-G
14967578 ACAGGTCTTACACTGACTTTCATATATCGAGGC
65 ACAGGTCTTACACTGACTTTCATATATCGAGGC
* ** * *
14967611 CGATGCCGTGTCCCAGACA-GGTCTTACACTGGCTCTCATCTATCGATGTCAAT-CCATGTCCCA
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTAGCA-C-ATCAAAGTCAATGCCATGTCCCA
14967674 GACAGGTCTTACACTGAC
64 GACAGGTCTTACACTGAC
14967692 ATACAACACG
Statistics
Matches: 71, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
96 17 0.24
97 42 0.59
98 12 0.17
ACGTcount: A:0.24, C:0.30, G:0.21, T:0.25
Consensus pattern (97 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGGCTAGCACATCAAAGTCAATGCCATGTCCCAGA
CAGGTCTTACACTGACTTTCATATATCGAGGC
Found at i:14967688 original size:48 final size:49
Alignment explanation
Indices: 14967509--14967826 Score: 209
Period size: 48 Copynumber: 6.7 Consensus size: 49
14967499 CATGGGATAA
* *
14967509 GATGTCGATGCCATGTCCCAGGCATGGTCTTACACTGGCTAGCA-C-ATC
1 GATGTCGATGCCATGTCCCAGACA-GGTCTTACACTGGCTATCATCTATC
* * * * *
14967557 AAAGTCGATGCCATGT-CCAGGACAGGTCTTACACTGACTTTCATATATC
1 GATGTCGATGCCATGTCCCA-GACAGGTCTTACACTGGCTATCATCTATC
* * * *
14967606 GAGGCCGATGCCGTGTCCCAGACAGGTCTTACACTGGCTCTCATCTATC
1 GATGTCGATGCCATGTCCCAGACAGGTCTTACACTGGCTATCATCTATC
* * *
14967655 GATGTCAAT-CCATGTCCCAGACAGGTCTTACACTGAC-ATACAAC-A-C
1 GATGTCGATGCCATGTCCCAGACAGGTCTTACACTGGCTAT-CATCTATC
* * * * * *
14967701 GCTGAC-A--CCATGTCCCAGACAGGTCTTACACTAGCT-TGTATATCTC
1 GATGTCGATGCCATGTCCCAGACAGGTCTTACACTGGCTAT-CATCTATC
* * * * * *
14967747 GAGGCCGATG-CATGTCCTAGACATGTCTTACACTAGCTCTCA--TATC
1 GATGTCGATGCCATGTCCCAGACAGGTCTTACACTGGCTATCATCTATC
* * * *
14967793 AATG-CTGATG-CATGACCCAAACATGTCTTACACT
1 GATGTC-GATGCCATGTCCCAGACAGGTCTTACACT
14967827 AGCGCACATA
Statistics
Matches: 215, Mismatches: 42, Indels: 28
0.75 0.15 0.10
Matches are distributed among these distances:
44 28 0.13
45 2 0.01
46 39 0.18
47 22 0.10
48 73 0.34
49 48 0.22
50 3 0.01
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.26
Consensus pattern (49 bp):
GATGTCGATGCCATGTCCCAGACAGGTCTTACACTGGCTATCATCTATC
Found at i:14968202 original size:30 final size:30
Alignment explanation
Indices: 14968166--14968222 Score: 96
Period size: 30 Copynumber: 1.9 Consensus size: 30
14968156 ACATTTTTGG
**
14968166 CAAAATGACCATTTTGTCCCTAGACTTTTA
1 CAAAATGACCATTTTACCCCTAGACTTTTA
14968196 CAAAATGACCATTTTACCCCTAGACTT
1 CAAAATGACCATTTTACCCCTAGACTT
14968223 GAAAATTGAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.32, C:0.26, G:0.09, T:0.33
Consensus pattern (30 bp):
CAAAATGACCATTTTACCCCTAGACTTTTA
Found at i:14970235 original size:20 final size:20
Alignment explanation
Indices: 14970210--14970250 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
14970200 GACTAAAATG
14970210 AAAATTGTAAAATTTGATGA
1 AAAATTGTAAAATTTGATGA
* * *
14970230 AAAATTTTGAAATTTTATGA
1 AAAATTGTAAAATTTGATGA
14970250 A
1 A
14970251 TACGTGTGCT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.49, C:0.00, G:0.12, T:0.39
Consensus pattern (20 bp):
AAAATTGTAAAATTTGATGA
Found at i:14979034 original size:99 final size:100
Alignment explanation
Indices: 14978846--14979085 Score: 313
Period size: 99 Copynumber: 2.4 Consensus size: 100
14978836 TCTATTGTGA
* *
14978846 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTGTAATCACGTGTGTAG
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCCGAAAACTGTAATCACGTGTGTAG
* * **
14978911 TACTAAGTGCAGGCTACTATGTGTATCAGATGGTT
66 TACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * * * **
14978946 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAA-T-TGGTCACGTGTGTA
1 -GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCCGAAAACTGTAATCACGTGTGTA
*
14979009 GTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
65 GTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * *
14979045 GGTCGCATGTGTAGTACTATGTGCAGGCTACTATGCGTACC
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACC
14979086 AGATAGCTTT
Statistics
Matches: 121, Mismatches: 18, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
98 36 0.30
99 43 0.36
100 1 0.01
101 41 0.34
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.29
Consensus pattern (100 bp):
GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCCGAAAACTGTAATCACGTGTGTAG
TACTAAGTGCAGGCTACTACGTGTACCAGATAATT
Found at i:14979085 original size:49 final size:49
Alignment explanation
Indices: 14978853--14979090 Score: 305
Period size: 49 Copynumber: 4.8 Consensus size: 49
14978843 TGAGGTCGCA
* * * **
14978853 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTGTAATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAA-T-TGGTCACG
* **
14978904 TGTGTAGTACTAAGTGCAGGCTACTATGTGTATCAGATGGTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATT-GGTCACG
* *
14978954 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATTGGTCACG
* * * *
14979003 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATTGGTCACG
* *
14979052 TGTGTAGTACTATGTGCAGGCTACTATGCGTACCAGATA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATA
14979091 GCTTTGGCTA
Statistics
Matches: 167, Mismatches: 19, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
49 90 0.54
50 43 0.26
51 34 0.20
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.29
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATTGGTCACG
Found at i:14986477 original size:43 final size:41
Alignment explanation
Indices: 14986371--14986480 Score: 107
Period size: 43 Copynumber: 2.6 Consensus size: 41
14986361 GATTTGAGAT
*
14986371 TTACATGTAAGACCATGTCTGGGATATCGACATCGTATTTGA
1 TTACATGTAAGACCA-GTCTGGGACATCGACATCGTATTTGA
* * * *
14986413 TTTCGTGTGAGACTCTA-TCTGGGACAGT-GTCATCGATATTTGA
1 TTACATGTAAGAC-C-AGTCTGGGACA-TCGACATCG-TATTTGA
14986456 TTACATGTAAGACCACGTCTGGGAC
1 TTACATGTAAGACCA-GTCTGGGAC
14986481 GTTGGCATTG
Statistics
Matches: 54, Mismatches: 8, Indels: 11
0.74 0.11 0.15
Matches are distributed among these distances:
41 1 0.02
42 25 0.46
43 27 0.50
44 1 0.02
ACGTcount: A:0.25, C:0.18, G:0.24, T:0.33
Consensus pattern (41 bp):
TTACATGTAAGACCAGTCTGGGACATCGACATCGTATTTGA
Found at i:14992233 original size:14 final size:14
Alignment explanation
Indices: 14992214--14992241 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
14992204 CATTCCGAAG
14992214 TATATATATACATA
1 TATATATATACATA
14992228 TATATATATACATA
1 TATATATATACATA
14992242 AGTATGCCCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.50, C:0.07, G:0.00, T:0.43
Consensus pattern (14 bp):
TATATATATACATA
Found at i:14992800 original size:27 final size:28
Alignment explanation
Indices: 14992688--14992813 Score: 191
Period size: 28 Copynumber: 4.5 Consensus size: 28
14992678 CATGAGATTG
* * * *
14992688 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
14992717 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
14992745 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
14992773 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
14992800 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
14992814 GACTTAATAT
Statistics
Matches: 92, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
27 24 0.26
28 50 0.54
29 18 0.20
ACGTcount: A:0.27, C:0.13, G:0.28, T:0.33
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:14992810 original size:55 final size:57
Alignment explanation
Indices: 14992688--14992813 Score: 193
Period size: 55 Copynumber: 2.2 Consensus size: 57
14992678 CATGAGATTG
* *
14992688 GCACTAAGTGTGCGGGTTTAAATTGTACAGCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTAAATTATACAGCACTAAGTGTGCGAGTTTGATTATATA
* *
14992745 GCACTAAGTGTGCGAGTTT-GATTATATAGCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTAAATTATACAGCACTAAGTGTGCGAGTTTGATTATATA
*
14992800 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
14992814 GACTTAATAT
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
55 24 0.38
56 22 0.34
57 18 0.28
ACGTcount: A:0.27, C:0.13, G:0.28, T:0.33
Consensus pattern (57 bp):
GCACTAAGTGTGCGAGTTTAAATTATACAGCACTAAGTGTGCGAGTTTGATTATATA
Found at i:14992824 original size:27 final size:27
Alignment explanation
Indices: 14992716--14992826 Score: 143
Period size: 28 Copynumber: 4.0 Consensus size: 27
14992706 TAAATTGTAC
*
14992716 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGATTATAT
*
14992744 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGATTATAT
*
14992772 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGATTATAT
* *
14992799 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-GACTTGATTATAT
14992826 A
1 A
14992827 CTTTTGAATC
Statistics
Matches: 78, Mismatches: 4, Indels: 3
0.92 0.05 0.04
Matches are distributed among these distances:
27 30 0.38
28 48 0.62
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGATTATAT
Found at i:14997001 original size:22 final size:22
Alignment explanation
Indices: 14996973--14997016 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
14996963 TTAAGGGTAA
14996973 ATTTAATAATTAATTATTATTC
1 ATTTAATAATTAATTATTATTC
14996995 ATTTAATAATTAATTATTATTC
1 ATTTAATAATTAATTATTATTC
14997017 CTTACAGCAG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.41, C:0.05, G:0.00, T:0.55
Consensus pattern (22 bp):
ATTTAATAATTAATTATTATTC
Found at i:15010070 original size:27 final size:27
Alignment explanation
Indices: 15010040--15010190 Score: 149
Period size: 27 Copynumber: 5.6 Consensus size: 27
15010030 ATATTGAGTC
* *
15010040 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* *
15010067 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
15010094 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
** ** **
15010122 CGCACACTTAGTGCCGCATGGTCATTT
1 CGCACACTTAGTGCTACATAATCAACT
* * * * *
15010149 CGTACACTTAGTGCAACATAGTGAAAT
1 CGCACACTTAGTGCTACATAATCAACT
15010176 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
15010191 GTAAAATTTA
Statistics
Matches: 102, Mismatches: 21, Indels: 2
0.82 0.17 0.02
Matches are distributed among these distances:
27 79 0.77
28 23 0.23
ACGTcount: A:0.30, C:0.27, G:0.17, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:15010132 original size:55 final size:55
Alignment explanation
Indices: 15010040--15010190 Score: 171
Period size: 55 Copynumber: 2.8 Consensus size: 55
15010030 ATATTGAGTC
* * * *
15010040 CGCACACTCAGTGCTATATAATC-AACTCGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAACTCGCACACTTAGTGCTACATAATCAAAT
** ** **
15010094 CGCACACTTAGTGCTACATAGTCAAACTCGCACACTTAGTGCCGCATGGTCATTT
1 CGCACACTTAGTGCTACATAGTCAAACTCGCACACTTAGTGCTACATAATCAAAT
* * *
15010149 CGTACACTTAGTGCAACATAGTGAAA-TCGCACACTTAGTGCT
1 CGCACACTTAGTGCTACATAGTCAAACTCGCACACTTAGTGCT
15010191 GTAAAATTTA
Statistics
Matches: 82, Mismatches: 14, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
54 35 0.43
55 47 0.57
ACGTcount: A:0.30, C:0.27, G:0.17, T:0.26
Consensus pattern (55 bp):
CGCACACTTAGTGCTACATAGTCAAACTCGCACACTTAGTGCTACATAATCAAAT
Found at i:15010690 original size:12 final size:12
Alignment explanation
Indices: 15010673--15010699 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
15010663 ATGGCATACT
15010673 TATGTATATATA
1 TATGTATATATA
15010685 TATGTATATATA
1 TATGTATATATA
15010697 TAT
1 TAT
15010700 ACTTCGGAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.41, C:0.00, G:0.07, T:0.52
Consensus pattern (12 bp):
TATGTATATATA
Found at i:15012656 original size:14 final size:14
Alignment explanation
Indices: 15012616--15012647 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
15012606 TGCAAGGTAT
15012616 AATATAT-G-GTAA
1 AATATATAGTGTAA
15012628 AATATATAGTGTAA
1 AATATATAGTGTAA
15012642 AATATA
1 AATATA
15012648 ATTTGTAAAC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 7 0.39
13 1 0.06
14 10 0.56
ACGTcount: A:0.53, C:0.00, G:0.12, T:0.34
Consensus pattern (14 bp):
AATATATAGTGTAA
Found at i:15012789 original size:11 final size:11
Alignment explanation
Indices: 15012767--15012808 Score: 50
Period size: 11 Copynumber: 3.8 Consensus size: 11
15012757 ATATAATATG
15012767 ATATAGAATAAA
1 ATATA-AATAAA
15012779 ATATAAATAAA
1 ATATAAATAAA
*
15012790 ATAT-AATGAA
1 ATATAAATAAA
*
15012800 ATAAAAATA
1 ATATAAATA
15012809 CTATCATATA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
10 8 0.31
11 13 0.50
12 5 0.19
ACGTcount: A:0.69, C:0.00, G:0.05, T:0.26
Consensus pattern (11 bp):
ATATAAATAAA
Found at i:15012950 original size:35 final size:33
Alignment explanation
Indices: 15012886--15012967 Score: 85
Period size: 35 Copynumber: 2.4 Consensus size: 33
15012876 CACAGTTAAT
* *
15012886 GAATAATAATACATAATTTAAAATAAAAATAATA
1 GAATAATAAAATATAATTTAAAATAAAAAT-ATA
* *
15012920 TATATAATAAAATATAATTTATAAGT-AAAATATA
1 GA-ATAATAAAATATAATTTA-AAATAAAAATATA
15012954 GAATAATGAAAATA
1 GAATAAT-AAAATA
15012968 ACATGATGGA
Statistics
Matches: 40, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
33 5 0.12
34 11 0.28
35 21 0.52
36 3 0.08
ACGTcount: A:0.62, C:0.01, G:0.05, T:0.32
Consensus pattern (33 bp):
GAATAATAAAATATAATTTAAAATAAAAATATA
Found at i:15014582 original size:44 final size:44
Alignment explanation
Indices: 15014533--15014878 Score: 239
Period size: 44 Copynumber: 8.2 Consensus size: 44
15014523 GCACAAAGAC
*
15014533 GCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAGAC
1 GCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAGAT
* * *
15014577 GCCAAATCTGCTGTCTTCGGTCTGCTCTCTG---AT--A-ATAT
1 GCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAGAT
* * * * * *
15014615 GCCAAATCTGCT-TCTTGGATTTACTC-CTTGTCGAATACAAATAT
1 GCCAAATCTGCTATCTTCGATCTGCTCTC-TGAC-AATACAGAGAT
* * * * *
15014659 GTCAAGTCTACTATC-TCTGATTTGCTCTCTGACCATACAGAGAT
1 GCCAAATCTGCTATCTTC-GATCTGCTCTCTGACAATACAGAGAT
* * *
15014703 GCCAAATCTACTATCTTCGATCTACTCCCTGACAATACA-AGGAT
1 GCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGA-GAT
* * * *
15014747 GCCAAATCTGCT-TCTTGGATTTGC-CCCTCGTCAAATAC-GAAGAT
1 GCCAAATCTGCTATCTTCGATCTGCTCTCT-GAC-AATACAG-AGAT
* * *
15014791 TCCAAA--T-C-ATCTTGGATCTGCTCTCTGACAATACAAAGAT
1 GCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAGAT
* *
15014831 GCCAAATCTG----CTTCGATCTGCTATCTGACAACACAGAGAT
1 GCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAGAT
15014871 GCCAAATC
1 GCCAAATC
15014879 ATCTTGGATC
Statistics
Matches: 241, Mismatches: 38, Indels: 50
0.73 0.12 0.15
Matches are distributed among these distances:
36 1 0.00
37 12 0.05
38 14 0.06
39 1 0.00
40 48 0.20
41 18 0.07
42 9 0.04
43 13 0.05
44 108 0.45
45 16 0.07
46 1 0.00
ACGTcount: A:0.27, C:0.27, G:0.15, T:0.30
Consensus pattern (44 bp):
GCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAGAT
Found at i:15014830 original size:40 final size:40
Alignment explanation
Indices: 15014681--15014892 Score: 176
Period size: 40 Copynumber: 5.1 Consensus size: 40
15014671 ATCTCTGATT
* * *
15014681 TGCTCTCTGACCATACAGAGATGCCAAATCTACTATCTTCGATC
1 TGCTCTCTGACAATACAAAGATGCCAAA--T-C-ATCTTGGATC
* * * * *
15014725 TACTCCCTGACAATACAAGGATGCCAAATCTGCTTCTTGGATT
1 TGCTCTCTGACAATACAAAGATGCCAAA--T-CATCTTGGATC
* * * *
15014768 TGC-CCCTCGTCAAATACGAAGATTCCAAATCATCTTGGATC
1 TGCTCTCT-GAC-AATACAAAGATGCCAAATCATCTTGGATC
*
15014809 TGCTCTCTGACAATACAAAGATGCCAAATC-TGCTTCGATC
1 TGCTCTCTGACAATACAAAGATGCCAAATCAT-CTTGGATC
* * *
15014849 TGCTATCTGACAACACAGAGATGCCAAATCATCTTGGATC
1 TGCTCTCTGACAATACAAAGATGCCAAATCATCTTGGATC
15014889 TGCT
1 TGCT
15014893 TCAGCGTAAA
Statistics
Matches: 138, Mismatches: 25, Indels: 14
0.78 0.14 0.08
Matches are distributed among these distances:
39 1 0.01
40 62 0.45
41 15 0.11
42 8 0.06
43 11 0.08
44 41 0.30
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.28
Consensus pattern (40 bp):
TGCTCTCTGACAATACAAAGATGCCAAATCATCTTGGATC
Found at i:15016415 original size:29 final size:27
Alignment explanation
Indices: 15016397--15016466 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
15016387 ATATTAAGTC
15016397 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTATATAATCAACT
*
15016424 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTCAGTGCTATATAATC-AACT
*
15016452 CGCACACTTAGTGCT
1 CGCACACTCAGTGCT
15016467 GTACAATTTA
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (27 bp):
CGCACACTCAGTGCTATATAATCAACT
Found at i:15016460 original size:28 final size:28
Alignment explanation
Indices: 15016397--15016494 Score: 135
Period size: 28 Copynumber: 3.5 Consensus size: 28
15016387 ATATTAAGTC
*
15016397 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
15016424 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
15016452 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
15016481 CGCACACTTAGTGC
1 CGCACACTTAGTGC
15016495 CAATCTCATG
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 22 0.34
28 23 0.36
29 19 0.30
ACGTcount: A:0.32, C:0.29, G:0.13, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:15022471 original size:47 final size:47
Alignment explanation
Indices: 15022408--15022512 Score: 192
Period size: 47 Copynumber: 2.2 Consensus size: 47
15022398 CCCTTCGGGA
* *
15022408 CTTATCACATTTATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATCCATCACATTGGCCATTCGGC
15022455 CTTATCACATATATACACTTTCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATCCATCACATTGGCCATTCGGC
15022502 CTTATCACATA
1 CTTATCACATA
15022513 ATTAATACTA
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
47 56 1.00
ACGTcount: A:0.28, C:0.30, G:0.08, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATCCATCACATTGGCCATTCGGC
Found at i:15039653 original size:40 final size:40
Alignment explanation
Indices: 15039581--15039765 Score: 225
Period size: 40 Copynumber: 4.7 Consensus size: 40
15039571 GCTACTCGTT
* *
15039581 CAAATGCCTTCGGGACATAGCTCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
15039621 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
15039661 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
15039700 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
15039741 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
15039766 CATCATTCGA
Statistics
Matches: 126, Mismatches: 14, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
38 2 0.02
39 33 0.26
40 78 0.62
41 13 0.10
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:15039699 original size:79 final size:81
Alignment explanation
Indices: 15039583--15039765 Score: 223
Period size: 79 Copynumber: 2.3 Consensus size: 81
15039573 TACTCGTTCA
* * *
15039583 AATGCCTTCGGGACATAGCTCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
* *
15039646 ATTTAGTAAC-TCGCACC
65 ATATAGTAACTTAGCA-C
**
15039663 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
* *
15039726 TATGGTCACTTAGCAC
66 TATAGTAACTTAGCAC
*
15039742 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
15039766 CATCATTCGA
Statistics
Matches: 89, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 58 0.65
80 28 0.31
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
TATAGTAACTTAGCAC
Found at i:15041059 original size:85 final size:84
Alignment explanation
Indices: 15040930--15041107 Score: 338
Period size: 85 Copynumber: 2.1 Consensus size: 84
15040920 TATTTTATTG
15040930 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTGATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTGATGACATGTTTT
15040995 TAGCCATAACATCTTGTCCA
66 TAGCCA-AACATCTTGTCCA
*
15041015 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTGATGACATGTTTT
15041080 TAGCCAAACATCTTGTCCA
66 TAGCCAAACATCTTGTCCA
15041099 CCCATGCTC
1 CCCATGCTC
15041108 ATGGCCGGCC
Statistics
Matches: 92, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
84 22 0.24
85 70 0.76
ACGTcount: A:0.26, C:0.28, G:0.09, T:0.37
Consensus pattern (84 bp):
CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTGATGACATGTTTT
TAGCCAAACATCTTGTCCA
Found at i:15043729 original size:17 final size:17
Alignment explanation
Indices: 15043678--15043732 Score: 67
Period size: 19 Copynumber: 3.2 Consensus size: 17
15043668 ATAATAATAC
*
15043678 ATAATTTA-AAATAAAA
1 ATAATTTATAAATAAAT
*
15043694 ATAATATATATAATAAAAT
1 ATAATTTATA-AAT-AAAT
15043713 ATAATTTATAAATAAAT
1 ATAATTTATAAATAAAT
15043730 ATA
1 ATA
15043733 GAATAATAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
16 7 0.21
17 8 0.24
18 6 0.18
19 12 0.36
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (17 bp):
ATAATTTATAAATAAAT
Found at i:15045396 original size:21 final size:21
Alignment explanation
Indices: 15045372--15045441 Score: 61
Period size: 21 Copynumber: 3.2 Consensus size: 21
15045362 CACATACATC
15045372 ATGAACTCAGACCATAATTTA
1 ATGAACTCAGACCATAATTTA
** * *
15045393 ATGAGTTCAGATGGCACAT-ATATC
1 ATGAACTCAGA---C-CATAATTTA
15045417 ATGAACTCAGACCATAATTTA
1 ATGAACTCAGACCATAATTTA
15045438 ATGA
1 ATGA
15045442 GTTTAGATGG
Statistics
Matches: 36, Mismatches: 8, Indels: 10
0.67 0.15 0.19
Matches are distributed among these distances:
20 3 0.08
21 17 0.47
24 13 0.36
25 3 0.08
ACGTcount: A:0.40, C:0.17, G:0.14, T:0.29
Consensus pattern (21 bp):
ATGAACTCAGACCATAATTTA
Found at i:15045412 original size:45 final size:45
Alignment explanation
Indices: 15045362--15045494 Score: 221
Period size: 45 Copynumber: 3.0 Consensus size: 45
15045352 AAACATGTGT
*
15045362 CACATACATCATGAACTCAGACCATAATTTAATGAGTTCAGATGG
1 CACATATATCATGAACTCAGACCATAATTTAATGAGTTCAGATGG
*
15045407 CACATATATCATGAACTCAGACCATAATTTAATGAGTTTAGATGG
1 CACATATATCATGAACTCAGACCATAATTTAATGAGTTCAGATGG
* * *
15045452 CACATATATCATGAACTCAGACCACAACTCAATGAGTTCAGAT
1 CACATATATCATGAACTCAGACCATAATTTAATGAGTTCAGAT
15045495 CACATAGTTT
Statistics
Matches: 82, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 82 1.00
ACGTcount: A:0.38, C:0.20, G:0.14, T:0.27
Consensus pattern (45 bp):
CACATATATCATGAACTCAGACCATAATTTAATGAGTTCAGATGG
Found at i:15045426 original size:24 final size:24
Alignment explanation
Indices: 15045399--15045472 Score: 66
Period size: 24 Copynumber: 3.2 Consensus size: 24
15045389 TTTAATGAGT
15045399 TCAGATGGCACATATATCATGAAC
1 TCAGATGGCACATATATCATGAAC
* * **
15045423 TCAGA---C-CATAATTTAATGAGT
1 TCAGATGGCACAT-ATATCATGAAC
*
15045444 TTAGATGGCACATATATCATGAAC
1 TCAGATGGCACATATATCATGAAC
15045468 TCAGA
1 TCAGA
15045473 CCACAACTCA
Statistics
Matches: 35, Mismatches: 10, Indels: 10
0.64 0.18 0.18
Matches are distributed among these distances:
20 3 0.09
21 12 0.34
24 17 0.49
25 3 0.09
ACGTcount: A:0.38, C:0.18, G:0.16, T:0.28
Consensus pattern (24 bp):
TCAGATGGCACATATATCATGAAC
Found at i:15045666 original size:22 final size:21
Alignment explanation
Indices: 15045623--15045668 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
15045613 GCACCAATCA
** *
15045623 CATACTCATGGAATAATCAAG
1 CATACTCATAAAATAATAAAG
15045644 CATACTCATAAAAGTAATAAAG
1 CATACTCATAAAA-TAATAAAG
15045666 CAT
1 CAT
15045669 TAAAATTCAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
21 11 0.52
22 10 0.48
ACGTcount: A:0.48, C:0.17, G:0.11, T:0.24
Consensus pattern (21 bp):
CATACTCATAAAATAATAAAG
Found at i:15049968 original size:40 final size:40
Alignment explanation
Indices: 15049901--15050106 Score: 290
Period size: 40 Copynumber: 5.2 Consensus size: 40
15049891 GGACTAAGAT
* *
15049901 CCGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTATGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
* * ** *
15049941 CCGAAGGCATTTATGCTAGCGATTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
15049981 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
*
15050021 CCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
* * *
15050061 CCTAAGGCATTTGAGCGAG-TAGCTATATCC-GGCTAAATC
1 CCGAAGGCATTTGTGCGAGTTA-CTATATCCGGGCTAAGTC
15050100 CCGAAGG
1 CCGAAGG
15050107 TACTTGGTTT
Statistics
Matches: 147, Mismatches: 18, Indels: 3
0.88 0.11 0.02
Matches are distributed among these distances:
39 16 0.11
40 131 0.89
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
Found at i:15058043 original size:40 final size:40
Alignment explanation
Indices: 15057998--15058141 Score: 168
Period size: 40 Copynumber: 3.6 Consensus size: 40
15057988 GTGCGAGTTG
* * *
15057998 CTATATTCGGGCTATGTCCCGAAGGCATTTATGCTAGCGA
1 CTATATCCGGGCTAAGTCCCGAAGGCATTTATGCGAGCGA
* * **
15058038 TTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA
1 CTATATCCGGGCTAAGTCCCGAAGGCATTTATGCGAGCGA
*
15058078 CTATATCCGGGCTAAGTCCCGAAGGCATTTGA-GCGAG-TA
1 CTATATCCGGGCTAAGTCCCGAAGGCATTT-ATGCGAGCGA
*
15058117 GCTATATCC-GGCTAAATCCCGAAGG
1 -CTATATCCGGGCTAAGTCCCGAAGG
15058142 TACTTGGTTT
Statistics
Matches: 92, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
39 17 0.18
40 75 0.82
ACGTcount: A:0.24, C:0.23, G:0.26, T:0.26
Consensus pattern (40 bp):
CTATATCCGGGCTAAGTCCCGAAGGCATTTATGCGAGCGA
Found at i:15058123 original size:80 final size:79
Alignment explanation
Indices: 15057977--15058141 Score: 217
Period size: 80 Copynumber: 2.1 Consensus size: 79
15057967 GACTAAGATT
* * * * * * *
15057977 CGAAGGCCTTTGTGCGAGTTGCTATATTCGGGCTATGTCCCGAAGGCATTTATGCTAGCGATTAT
1 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTATGCGAGAGACTAT
*
15058042 ATCCGGGCTAAGTCC
66 ATCC-GGCTAAATCC
15058057 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGA-GCGAGTAG-CT
1 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTT-ATGCGAG-AGACT
15058120 ATATCCGGCTAAATCC
64 ATATCCGGCTAAATCC
15058136 CGAAGG
1 CGAAGG
15058142 TACTTGGTTT
Statistics
Matches: 75, Mismatches: 8, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
79 15 0.20
80 58 0.77
81 2 0.03
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (79 bp):
CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTATGCGAGAGACTAT
ATCCGGCTAAATCC
Found at i:15060640 original size:44 final size:41
Alignment explanation
Indices: 15060593--15060749 Score: 138
Period size: 43 Copynumber: 3.7 Consensus size: 41
15060583 TGTGGTTTTG
*
15060593 TGTAAGACCACGTCTGGGACATTGGCATCGACTTCTGTTTTACG
1 TGTAAGACCACGTCTGGGACATTGGCATCGA-TT-TG-TTTACA
* * *
15060637 TGTAAGACCATGTCTAGGACATCGGCATCGTATTTGATTT-CA
1 TGTAAGACCACGTCTGGGACATTGGCATCG-ATTTG-TTTACA
* * * * *
15060679 TGTAAGACTC-TGTCTGGGATAGTGGTATCGATGTTTGATTACA
1 TGTAAGAC-CACGTCTGGGACATTGGCATCGA--TTTGTTTACA
*
15060722 TGTAAGACCACGTCTGGGACGTTGGCAT
1 TGTAAGACCACGTCTGGGACATTGGCAT
15060750 TGTATATGTT
Statistics
Matches: 91, Mismatches: 16, Indels: 13
0.76 0.13 0.11
Matches are distributed among these distances:
41 1 0.01
42 27 0.30
43 33 0.36
44 29 0.32
45 1 0.01
ACGTcount: A:0.23, C:0.18, G:0.26, T:0.32
Consensus pattern (41 bp):
TGTAAGACCACGTCTGGGACATTGGCATCGATTTGTTTACA
Found at i:15062825 original size:21 final size:20
Alignment explanation
Indices: 15062787--15062825 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
15062777 TCTTGAAAAT
*
15062787 AGGGCACACGCCCGTGTGAA
1 AGGGCACACGCCCATGTGAA
*
15062807 AGGGCAACATGCCCATGTG
1 AGGGC-ACACGCCCATGTG
15062826 GTCATTATAA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 5 0.31
21 11 0.69
ACGTcount: A:0.26, C:0.28, G:0.33, T:0.13
Consensus pattern (20 bp):
AGGGCACACGCCCATGTGAA
Found at i:15063244 original size:70 final size:70
Alignment explanation
Indices: 15063131--15063269 Score: 215
Period size: 70 Copynumber: 2.0 Consensus size: 70
15063121 TGAGATACGC
* * * *
15063131 GGTCGTGTCTCTTCCCGTGCGTTTACTACCATACGTACTGACTTGTAAATTTTATGTGCAGGGAA
1 GGTCGTGTCTCTACACGTGCGTTTACTACCATACATACTGACTTGCAAATTTTATGTGCAGGGAA
15063196 CACAT
66 CACAT
* * *
15063201 GGTCGTGTCTCTACACGTGTGTTTACTACCATGCATACTGACTTGCAAATTTTATGTGCAGGGGA
1 GGTCGTGTCTCTACACGTGCGTTTACTACCATACATACTGACTTGCAAATTTTATGTGCAGGGAA
15063266 CACA
66 CACA
15063270 CGACCAAGCA
Statistics
Matches: 62, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
70 62 1.00
ACGTcount: A:0.22, C:0.22, G:0.22, T:0.33
Consensus pattern (70 bp):
GGTCGTGTCTCTACACGTGCGTTTACTACCATACATACTGACTTGCAAATTTTATGTGCAGGGAA
CACAT
Found at i:15064154 original size:49 final size:49
Alignment explanation
Indices: 15064043--15064172 Score: 147
Period size: 49 Copynumber: 2.7 Consensus size: 49
15064033 TAGGGTATAA
* * * * *
15064043 TGCCGATGCCATGTCCCAAACATGGTCTTACACTAACTATTGAAATCGG
1 TGCCGACGACATGTCCCAAACATGGTCTTACACTAACTACTCAAATCCG
* * * *
15064092 GGCCGACGTCATGTACCAAACATGGTCTTACACTAGCT-CTCACATATCCG
1 TGCCGACGACATGTCCCAAACATGGTCTTACACTAACTACTCA-A-ATCCG
15064142 TGCCGA-GACATGTCCCAAACATGGTCTTACA
1 TGCCGACGACATGTCCCAAACATGGTCTTACA
15064173 TTGACACCTC
Statistics
Matches: 68, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
48 2 0.03
49 57 0.84
50 9 0.13
ACGTcount: A:0.28, C:0.29, G:0.18, T:0.25
Consensus pattern (49 bp):
TGCCGACGACATGTCCCAAACATGGTCTTACACTAACTACTCAAATCCG
Found at i:15066666 original size:47 final size:47
Alignment explanation
Indices: 15066601--15067365 Score: 1244
Period size: 47 Copynumber: 16.1 Consensus size: 47
15066591 GAAATGATAG
* *
15066601 TAAGGCCTAATGGCCGATGTGATGAACGTGAAAGTGTATATATATGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
15066648 TAAGGCCTAATGGCCGATGTGATGAATCTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
*
15066697 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
15066744 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
*
15066793 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
15066840 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATACATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT--ATATGTGA
*
15066889 TAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
15066936 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
15066983 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
15067030 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
15067077 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGGGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAA--GTGTATATATGTGA
*
15067126 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
15067173 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
15067220 TAAGGCCTAATGG-CGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
*
15067268 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * * * * * * *
15067315 CAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
15067362 TAAG
1 TAAG
15067366 TCCCTAAGGG
Statistics
Matches: 677, Mismatches: 30, Indels: 22
0.93 0.04 0.03
Matches are distributed among these distances:
46 22 0.03
47 430 0.64
48 23 0.03
49 202 0.30
ACGTcount: A:0.33, C:0.10, G:0.29, T:0.28
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:15066765 original size:96 final size:96
Alignment explanation
Indices: 15066601--15067365 Score: 1278
Period size: 96 Copynumber: 8.0 Consensus size: 96
15066591 GAAATGATAG
* **
15066601 TAAGGCCTAATGGCCGATGTGATGAACGTGAAAGTGTATATATATGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGATAAGGCCTAATGGCCGAT
*
15066666 GTGATGAATCTGAAAGTGTATATATATGTGA
66 GTGATGAATGTGAAAGTGTATATATATGTGA
15066697 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGATAAGGCCTAATGGCCGAT
15066762 GTGATGAATGTGAAAGTGTATATATATGTGA
66 GTGATGAATGTGAAAGTGTATATATATGTGA
15066793 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGATAAGGCCTAATGGCCGAT
*
15066858 GTGATGAATGTGAAAGTGTATACATATGTGA
66 GTGATGAATGTGAAAGTGTATATATATGTGA
* *
15066889 TAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGATAAGGCCTAATGGCCGAT
15066954 GTGATGAATGTGAAA--GTATATATATGTGA
66 GTGATGAATGTGAAAGTGTATATATATGTGA
15066983 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGATAAGGCCTAATGGCCGAT
*
15067048 GTGATGAATGTGAAAGTG--TATATACGTGA
66 GTGATGAATGTGAAAGTGTATATATATGTGA
* *
15067077 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGGGTATATATATGTGATAAGGCCTAATGGCCG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAA--GTGTATATACGTGATAAGGCCTAATGGCCG
15067142 ATGTGATGAATGTGAAA--GTATATATATGTGA
64 ATGTGATGAATGTGAAAGTGTATATATATGTGA
15067173 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGATAAGGCCTAATGG-CGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGATAAGGCCTAATGGCCGAT
15067237 GTGATGAATGTGAAAGTGTATATATATGTGA
66 GTGATGAATGTGAAAGTGTATATATATGTGA
* * * * * * * *
15067268 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTATATATATGTGACAGGGCCGAGTGGCCAAC
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGATAAGGCCTAATGGCCGAT
*
15067333 GTGATGGATGTGAAAGTGTATA-A-ATGTGA
66 GTGATGAATGTGAAAGTGTATATATATGTGA
15067362 TAAG
1 TAAG
15067366 TCCCTAAGGG
Statistics
Matches: 635, Mismatches: 25, Indels: 20
0.93 0.04 0.03
Matches are distributed among these distances:
93 19 0.03
94 170 0.27
95 69 0.11
96 377 0.59
ACGTcount: A:0.33, C:0.10, G:0.29, T:0.28
Consensus pattern (96 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGATAAGGCCTAATGGCCGAT
GTGATGAATGTGAAAGTGTATATATATGTGA
Found at i:15067372 original size:143 final size:143
Alignment explanation
Indices: 15066601--15067365 Score: 1270
Period size: 143 Copynumber: 5.4 Consensus size: 143
15066591 GAAATGATAG
* *
15066601 TAAGGCCTAATGGCCGATGTGATGAACGTGAAAGTGTATATATATGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
*
15066666 GTGATGAATCTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
66 GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
* *
15066731 TGTATATACGTGA
131 TATATATATGTGA
15066744 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
*
15066809 ATGTGATGAATGTGAAAGTG--TATATACGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
64 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
15066872 AGTGTATACATATGTGA
129 A--GTATATATATGTGA
*
15066889 TAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
15066954 GTGATGAATGTGAAA--GTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
66 GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
* *
15067017 TGTATATACGTGA
131 TATATATATGTGA
*
15067030 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
*
15067095 GTGATGAATGTGAAAGGGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
66 GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
15067160 TATATATATGTGA
131 TATATATATGTGA
*
15067173 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGATAAGGCCTAATGG-CGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
15067237 GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
66 GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
15067302 TATATATATGTGA
131 TATATATATGTGA
* * * * * * * *
15067315 CAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
15067366 TCCCTAAGGG
Statistics
Matches: 588, Mismatches: 26, Indels: 17
0.93 0.04 0.03
Matches are distributed among these distances:
141 90 0.15
142 123 0.21
143 284 0.48
145 91 0.15
ACGTcount: A:0.33, C:0.10, G:0.29, T:0.28
Consensus pattern (143 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
TATATATATGTGA
Found at i:15067540 original size:37 final size:37
Alignment explanation
Indices: 15067484--15067562 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
15067474 CCGAGCTCTA
* * *
15067484 AAGACCCGATGACTGCGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTGCGTGTGGAGATTATGTCCGGGT
*
15067521 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTGCGTGTGGAGATTATGTCCGGGT
15067558 AAGAC
1 AAGAC
15067563 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.23, C:0.19, G:0.33, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTGCGTGTGGAGATTATGTCCGGGT
Found at i:15069383 original size:29 final size:29
Alignment explanation
Indices: 15069348--15069421 Score: 103
Period size: 29 Copynumber: 2.6 Consensus size: 29
15069338 GTTGTGAGAT
* * **
15069348 TGGCACTAAGTGTGCGGGCTTGAAATGCA
1 TGGCACTAAGTGTGCGAGCTTAAAATAAA
*
15069377 TGGCACTAAGTGTGCGAGTTTAAAATAAA
1 TGGCACTAAGTGTGCGAGCTTAAAATAAA
15069406 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
15069422 TGGTTGATTA
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 40 1.00
ACGTcount: A:0.28, C:0.15, G:0.31, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTAAAATAAA
Found at i:15069823 original size:39 final size:41
Alignment explanation
Indices: 15069734--15069923 Score: 124
Period size: 40 Copynumber: 4.7 Consensus size: 41
15069724 TCGAATGATG
* *
15069734 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAA
* * * * *
15069774 TCTGGACTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAA
** ***
15069813 TCCGGGCTAAGTCCCGAAGAGCATTAATGCT-AGTGA-TGTA
1 TCCGGGCTAAGTCCCGAAG-GCATTGGTGCTAAGTGACCAAA
* ** ***
15069853 TCTGGGCTAAGTCCCGAAGAGCATTCATGCT-AGTGA-TGTA
1 TCCGGGCTAAGTCCCGAAG-GCATTGGTGCTAAGTGACCAAA
* *
15069893 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCT
1 TCCGGGCTAAGTCCCGAAG-GCATTGGTGCT
15069924 GGTGTTATAT
Statistics
Matches: 127, Mismatches: 19, Indels: 8
0.82 0.12 0.05
Matches are distributed among these distances:
39 25 0.20
40 90 0.71
41 12 0.09
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (41 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAA
Found at i:15069860 original size:40 final size:40
Alignment explanation
Indices: 15069812--15069968 Score: 224
Period size: 40 Copynumber: 3.9 Consensus size: 40
15069802 GAGTTACTAA
*
15069812 ATCCGGGCTAAGTCCCGAAGAGCATTAATGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
*
15069852 ATCTGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
* * * * *
15069892 ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTGGTGTTAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
* * *
15069932 ATCCGGGCTAGGTCCCGAAGAGCAATCATGCTGGTGA
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA
15069969 CGTGTATTCG
Statistics
Matches: 104, Mismatches: 13, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 104 1.00
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.25
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
Found at i:15073358 original size:47 final size:47
Alignment explanation
Indices: 15073293--15073617 Score: 560
Period size: 47 Copynumber: 6.8 Consensus size: 47
15073283 GAAATGATAG
*
15073293 TAAGGCCTAATGGCCGATGTGATGAACGTGAAAGTGTATATATATGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGA
*
15073340 TAAGGCCTAATGGCCGATGTGATGAACGTGAAAGTGTATATATATGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGA
15073387 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATA--TGA
**
15073436 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGA
15073483 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATA--TGA
**
15073532 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGA
15073579 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
15073618 GATGTGATGA
Statistics
Matches: 267, Mismatches: 7, Indels: 8
0.95 0.02 0.03
Matches are distributed among these distances:
47 177 0.66
49 90 0.34
ACGTcount: A:0.33, C:0.10, G:0.29, T:0.29
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGA
Found at i:15073471 original size:96 final size:96
Alignment explanation
Indices: 15073293--15074082 Score: 850
Period size: 96 Copynumber: 8.0 Consensus size: 96
15073283 GAAATGATAG
*
15073293 TAAGGCCTAATGGCCGATGTGATGAACGTGAAAGTGTATATATA--TGATAAGGCCTAATGGCCG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
*
15073356 ATGTGATGAACGTGAAAGTGTATATATATGA
66 ATGTGATGAATGTGAAAGTGTATATATATGA
15073387 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
**
15073452 ATGTGATGAATGTGAAAGTGTATATACGTGA
66 ATGTGATGAATGTGAAAGTGTATATATATGA
15073483 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
**
15073548 ATGTGATGAATGTGAAAGTGTATATACGTGA
66 ATGTGATGAATGTGAAAGTGTATATATATGA
**
15073579 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGATGTGATGAATGTGA-AAGTGTATA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT-A--T-AT--ATGTGATAAG-GCCTA
*** * * * * * * *
15073643 TATGTGATAAGGCCTAATGGTCGATGTGATGAATGT-GAAAGTAT-A
59 -ATG-GCCGATG--TGAT-G--AATGTGA-AAGTGTATATA-TATGA
* * * * ** * *
15073688 TATATG--TGATAGGGCCTA-ATGGCCG-ATGTGATGAATGTGAAAGTGTATATACGTGATAAGG
1 TA-AGGCCT-A-ATGGCCGATGT-GATGAATGTGA--AA-GT----GTATATATATGTGATAAGG
15073749 CCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
55 CCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATA--TGA
*
15073793 TAGGGCCTAATGGCCGATGTGATGAATGTGAAA--GTATATATATGTGATAAGGCCTAATGGCCG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
**
15073856 ATGTGATGAATGTGAAAGTGTATATACGTGA
66 ATGTGATGAATGTGAAAGTGTATATATATGA
*
15073887 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
15073952 ATGTGATGAATGTGAAAGTGTATATATATGTGA
66 ATGTGATGAATGTGAAAGTGTATATATA--TGA
* * * * * *
15073985 TAGGGCCTAATGGCCGATGTGATGAATGTGAAA--GTATATATATGTGACAGGGCCGAGTGGCCA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
* * * *
15074048 ACGTGATGGATGTGAAAGTGTATAAATGTGA
66 ATGTGATGAATGTGAAAGTGTATATATATGA
15074079 TAAG
1 TAAG
15074083 TCCCGAAGGG
Statistics
Matches: 591, Mismatches: 63, Indels: 84
0.80 0.09 0.11
Matches are distributed among these distances:
94 84 0.14
96 341 0.58
97 1 0.00
98 35 0.06
99 1 0.00
100 2 0.00
101 3 0.01
102 15 0.03
103 13 0.02
104 13 0.02
105 12 0.02
106 7 0.01
107 1 0.00
108 4 0.01
109 22 0.04
110 23 0.04
111 5 0.01
112 4 0.01
113 1 0.00
115 1 0.00
116 3 0.01
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (96 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
ATGTGATGAATGTGAAAGTGTATATATATGA
Found at i:15073572 original size:143 final size:143
Alignment explanation
Indices: 15073293--15074082 Score: 925
Period size: 143 Copynumber: 5.4 Consensus size: 143
15073283 GAAATGATAG
* *
15073293 TAAGGCCTAATGGCCGATGTGATGAACGTGAAAGTGTATATATATGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
*
15073358 GTGATGAACGTGAAAGTGTATATATA--TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
66 GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
*
15073421 TGTATATATATGTGA
131 TG--TATATACGTGA
*
15073436 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
15073501 GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
66 GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
15073566 TGTATATACGTGA
131 TGTATATACGTGA
* **
15073579 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGATGTGATGAATGTGAAAGTGTATAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT-ATATG-TG-A--T--AAG-GCCTA-
*** * * * * * * *
15073644 ATGTGATAAGGCCTAATGGTCGATGTGATGAA-TGTGA-A-AGTATAT-ATATGTG-AT-AGGGC
57 ATG-GCCGATG--TGAT-G--AATGTGA--AAGTGT-ATATA-TATGTGATAAG-GCCTAATGGC
15073703 CTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGA
111 C----G----ATGTGATGAATGTGAAAGTGTATATACGTGA
*
15073744 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
15073809 ATGTGATGAATGTGAAA--GTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
64 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
15073872 AGTGTATATACGTGA
129 AGTGTATATACGTGA
*
15073887 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
*
15073952 ATGTGATGAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCGATGTGATGAATGTGAA
64 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
15074017 AGTATATATATGTGA
129 AGTGTATATACGTGA
* * * * * * * *
15074032 CAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
15074083 TCCCGAAGGG
Statistics
Matches: 563, Mismatches: 45, Indels: 78
0.82 0.07 0.11
Matches are distributed among these distances:
143 262 0.47
144 3 0.01
145 128 0.23
146 1 0.00
147 1 0.00
148 2 0.00
149 8 0.01
150 11 0.02
151 8 0.01
152 9 0.02
153 3 0.01
154 1 0.00
155 6 0.01
156 1 0.00
157 8 0.01
158 15 0.03
159 12 0.02
160 5 0.01
161 1 0.00
162 1 0.00
164 1 0.00
165 69 0.12
166 4 0.01
167 3 0.01
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (143 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
TGTATATACGTGA
Found at i:15073622 original size:24 final size:25
Alignment explanation
Indices: 15073594--15073697 Score: 99
Period size: 24 Copynumber: 4.3 Consensus size: 25
15073584 CCTAATGGCC
15073594 GATGTGATGAATGTGAAAGTGTAT-
1 GATGTGATGAATGTGAAAGTGTATA
15073618 GATGTGATGAATGTGAAAGTGTATA
1 GATGTGATGAATGTGAAAGTGTATA
* * *** * *
15073643 TATGTGAT-AAGGCCTAA-TG-GTC
1 GATGTGATGAATGTGAAAGTGTATA
*
15073665 GATGTGATGAATGTGAAAGTATATA
1 GATGTGATGAATGTGAAAGTGTATA
*
15073690 TATGTGAT
1 GATGTGAT
15073698 AGGGCCTAAT
Statistics
Matches: 60, Mismatches: 16, Indels: 7
0.72 0.19 0.08
Matches are distributed among these distances:
22 8 0.13
23 7 0.12
24 30 0.50
25 15 0.25
ACGTcount: A:0.34, C:0.03, G:0.30, T:0.34
Consensus pattern (25 bp):
GATGTGATGAATGTGAAAGTGTATA
Found at i:15073624 original size:71 final size:71
Alignment explanation
Indices: 15073547--15073684 Score: 258
Period size: 71 Copynumber: 1.9 Consensus size: 71
15073537 CCTAATGGCC
15073547 GATGTGATGAATGTGAAAGTGTATATACGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 GATGTGATGAATGTGAAAGTGTATATACGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
15073612 GTGTAT
66 GTGTAT
* *
15073618 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGTCGATGTGATGAATGTGAAA
1 GATGTGATGAATGTGAAAGTGTATATACGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
15073683 GT
66 GT
15073685 ATATATATGT
Statistics
Matches: 65, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
71 65 1.00
ACGTcount: A:0.33, C:0.06, G:0.31, T:0.30
Consensus pattern (71 bp):
GATGTGATGAATGTGAAAGTGTATATACGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
GTGTAT
Found at i:15073654 original size:118 final size:119
Alignment explanation
Indices: 15073498--15073735 Score: 424
Period size: 118 Copynumber: 2.0 Consensus size: 119
15073488 CCTAATGGCC
15073498 GATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
1 GATGTGATGAATGTGAAAGTG-ATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
*
15073563 AAGTGTATATACGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
65 AAGTATATATACGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
*
15073618 GATGTGATGAATGTGAAAGTG-TATATATGTGATAAGGCCTAATGGTCGATGTGATGAATGTGAA
1 GATGTGATGAATGTGAAAGTGATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
15073682 AGTATATATATGTGATAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
66 AGTATATATACGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
15073736 ATACGTGATA
Statistics
Matches: 114, Mismatches: 4, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
118 93 0.82
120 21 0.18
ACGTcount: A:0.32, C:0.07, G:0.30, T:0.31
Consensus pattern (119 bp):
GATGTGATGAATGTGAAAGTGATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
AGTATATATACGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
Found at i:15073690 original size:47 final size:47
Alignment explanation
Indices: 15073618--15074082 Score: 705
Period size: 47 Copynumber: 9.8 Consensus size: 47
15073608 GAAAGTGTAT
* *
15073618 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGTC
1 GATGTGATGAATGTGAAAGTATATATATGTGATAAGGCCTAATGGCC
*
15073665 GATGTGATGAATGTGAAAGTATATATATGTGATAGGGCCTAATGGCC
1 GATGTGATGAATGTGAAAGTATATATATGTGATAAGGCCTAATGGCC
* *
15073712 GATGTGATGAATGTGAAAGTGTATATACGTGATAAGGCCTAATGGCC
1 GATGTGATGAATGTGAAAGTATATATATGTGATAAGGCCTAATGGCC
*
15073759 GATGTGATGAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCC
1 GATGTGATGAATGTGAAA--GTATATATATGTGATAAGGCCTAATGGCC
15073808 GATGTGATGAATGTGAAAGTATATATATGTGATAAGGCCTAATGGCC
1 GATGTGATGAATGTGAAAGTATATATATGTGATAAGGCCTAATGGCC
* *
15073855 GATGTGATGAATGTGAAAGTGTATATACGTGATAAGGCCTAATGGCC
1 GATGTGATGAATGTGAAAGTATATATATGTGATAAGGCCTAATGGCC
*
15073902 GATGTGATGAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCC
1 GATGTGATGAATGTGAAA--GTATATATATGTGATAAGGCCTAATGGCC
*
15073951 GATGTGATGAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCC
1 GATGTGATGAATGTGAAA--GTATATATATGTGATAAGGCCTAATGGCC
* * * *
15074000 GATGTGATGAATGTGAAAGTATATATATGTGACAGGGCCGAGTGGCC
1 GATGTGATGAATGTGAAAGTATATATATGTGATAAGGCCTAATGGCC
* * * * *
15074047 AACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 GATGTGATGAATGTGAAAGTATATATATGTGATAAG
15074083 TCCCGAAGGG
Statistics
Matches: 389, Mismatches: 25, Indels: 8
0.92 0.06 0.02
Matches are distributed among these distances:
47 252 0.65
49 137 0.35
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
GATGTGATGAATGTGAAAGTATATATATGTGATAAGGCCTAATGGCC
Found at i:15073720 original size:165 final size:166
Alignment explanation
Indices: 15073451--15073782 Score: 621
Period size: 165 Copynumber: 2.0 Consensus size: 166
15073441 CCTAATGGCC
15073451 GATGTGATGAATGTGAAAGTGTATATACGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 GATGTGATGAATGTGAAAGTGTATATACGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
15073516 GTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGATA
66 G-GTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGATA
15073581 AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
130 AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
* *
15073618 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGTCGATGTGATGAATGTGAAA
1 GATGTGATGAATGTGAAAGTGTATATACGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
*
15073683 -GTATATATATGTGATAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGATAA
66 GGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGATAA
15073747 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
131 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
15073783 ATATATGTGA
Statistics
Matches: 162, Mismatches: 3, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
165 99 0.61
167 63 0.39
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (166 bp):
GATGTGATGAATGTGAAAGTGTATATACGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
GGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGATAA
GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
Found at i:15074257 original size:37 final size:37
Alignment explanation
Indices: 15074201--15074279 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
15074191 CCGAGCTCTA
* * *
15074201 AAGACCCGATGACTACGTGTGGGGATTTTGTCCAGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCAGGT
* *
15074238 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCAGGT
15074275 AAGAC
1 AAGAC
15074280 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCAGGT
Found at i:15082207 original size:29 final size:27
Alignment explanation
Indices: 15082121--15082211 Score: 83
Period size: 29 Copynumber: 3.2 Consensus size: 27
15082111 TACTTGTATC
* *
15082121 TGGCCCATTAAGCCCAATCATATTCATA
1 TGGCCCATT-AGCCAAATCACATTCATA
* * *
15082149 TGACCCATTAGACCTAAATCACCTACATA
1 TGGCCCATTAG-CC-AAATCACATTCATA
*
15082178 TGGCCCATTAGGTCCAAATCACATTTATA
1 TGGCCCATTA-G-CCAAATCACATTCATA
15082207 TGGCC
1 TGGCC
15082212 TGTTAGGCCC
Statistics
Matches: 50, Mismatches: 10, Indels: 5
0.77 0.15 0.08
Matches are distributed among these distances:
27 2 0.04
28 10 0.20
29 35 0.70
30 3 0.06
ACGTcount: A:0.32, C:0.29, G:0.12, T:0.27
Consensus pattern (27 bp):
TGGCCCATTAGCCAAATCACATTCATA
Found at i:15085455 original size:31 final size:31
Alignment explanation
Indices: 15085412--15085475 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
15085402 CCTTTTCATA
*
15085412 TTTCATAATTCATAACACTGGGCCGAAGCCT
1 TTTCATAATTCATAACACTGGGCCAAAGCCT
* **
15085443 TTTCATATTTCATATTACTGGGCCAAAGCCT
1 TTTCATAATTCATAACACTGGGCCAAAGCCT
15085474 TT
1 TT
15085476 ACTGTAAACG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.27, C:0.23, G:0.14, T:0.36
Consensus pattern (31 bp):
TTTCATAATTCATAACACTGGGCCAAAGCCT
Found at i:15085776 original size:47 final size:48
Alignment explanation
Indices: 15085682--15085810 Score: 183
Period size: 47 Copynumber: 2.7 Consensus size: 48
15085672 CTGGAGGCCT
*
15085682 AGCCTCTTTTAATAACTGGGGCA-AAGCCCTTTTTTAATAACGGGGGCATA
1 AGCC-CTTTTAATAACTGGGGCATAA-CCC-CTTTTAATAACGGGGGCATA
*
15085732 AGCCC-TTTAATAACTGGGGCATAACCCCTTTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATAACCCCTTTTAATAACGGGGGCATA
*
15085779 AGCCCTTTTAATAACT-GGGCATAAGCCCTTTT
1 AGCCCTTTTAATAACTGGGGCATAACCCCTTTT
15085811 TGCACTTCTT
Statistics
Matches: 74, Mismatches: 3, Indels: 7
0.88 0.04 0.08
Matches are distributed among these distances:
47 38 0.51
48 29 0.39
49 3 0.04
50 4 0.05
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.30
Consensus pattern (48 bp):
AGCCCTTTTAATAACTGGGGCATAACCCCTTTTAATAACGGGGGCATA
Found at i:15085811 original size:24 final size:24
Alignment explanation
Indices: 15085668--15085810 Score: 195
Period size: 24 Copynumber: 6.0 Consensus size: 24
15085658 GCTTTATCAT
*
15085668 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
15085693 ATAACTGGGGCA-AAGCCCTTTTTTA
1 ATAACTGGGGCATAAGCCC--TTTTA
*
15085718 ATAACGGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
15085741 ATAACTGGGGCATAACCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
15085765 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
15085789 ATAACT-GGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
15085811 TGCACTTCTT
Statistics
Matches: 108, Mismatches: 5, Indels: 12
0.86 0.04 0.10
Matches are distributed among these distances:
23 38 0.35
24 40 0.37
25 24 0.22
26 6 0.06
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:15085883 original size:9 final size:9
Alignment explanation
Indices: 15085869--15085925 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
15085859 ATCTTGTGTG
15085869 CATATCATA
1 CATATCATA
*
15085878 CATATCATGTG
1 CATATCA--TA
15085889 CATATCATA
1 CATATCATA
* *
15085898 CATGTCATGTG
1 CATATCA--TA
15085909 CATATCATA
1 CATATCATA
15085918 CATATCAT
1 CATATCAT
15085926 GTTTACACTA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:15085888 original size:20 final size:20
Alignment explanation
Indices: 15085865--15085927 Score: 117
Period size: 20 Copynumber: 3.1 Consensus size: 20
15085855 GAACATCTTG
15085865 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
*
15085885 TGTGCATATCATACATGTCA
1 TGTGCATATCATACATATCA
15085905 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
15085925 TGT
1 TGT
15085928 TTACACTAGG
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.32, C:0.19, G:0.13, T:0.37
Consensus pattern (20 bp):
TGTGCATATCATACATATCA
Found at i:15098572 original size:46 final size:46
Alignment explanation
Indices: 15098522--15098693 Score: 188
Period size: 46 Copynumber: 3.7 Consensus size: 46
15098512 GGTTGAGCAT
* * *
15098522 CTGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCAAATGC
1 CTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAAACGC
* * *
15098568 CTGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGC
1 CTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAA--ACGC
** *
15098613 ATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACGC
1 --CTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAAACGC
* *
15098661 CTTAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 CTGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
15098694 GGGGCAGATT
Statistics
Matches: 105, Mismatches: 14, Indels: 14
0.79 0.11 0.11
Matches are distributed among these distances:
43 6 0.06
45 5 0.05
46 57 0.54
47 26 0.25
48 5 0.05
50 6 0.06
ACGTcount: A:0.23, C:0.19, G:0.27, T:0.31
Consensus pattern (46 bp):
CTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAAACGC
Found at i:15104058 original size:46 final size:45
Alignment explanation
Indices: 15104008--15104180 Score: 190
Period size: 46 Copynumber: 3.8 Consensus size: 45
15103998 TGGTTGAGCA
15104008 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAATG
* * * *
15104054 TCCGAACTCGTTGAGTTGAGTTCGAGTTC-GTGA--GATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAA-T--G
* *
15104099 CATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAATG
* *
15104147 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
15104181 GGGGTGGGTT
Statistics
Matches: 105, Mismatches: 13, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 59 0.56
47 27 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAATG
Found at i:15104164 original size:93 final size:93
Alignment explanation
Indices: 15104005--15104175 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
15103995 GGATGGTTGA
* * *
15104005 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
*
15104070 TGAGTTCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
15104098 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
15104163 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
15104176 ACTTAGGGGT
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:15106947 original size:15 final size:15
Alignment explanation
Indices: 15106927--15106988 Score: 56
Period size: 15 Copynumber: 4.2 Consensus size: 15
15106917 TCTTGGGTTT
15106927 CTTTATTCTGGATTC
1 CTTTATTCTGGATTC
* *
15106942 CTTTATTCTAGATTT
1 CTTTATTCTGGATTC
* *
15106957 CTCTA-TCTTGGATTT
1 CTTTATTC-TGGATTC
*
15106972 CTTTATTC-GGTTTC
1 CTTTATTCTGGATTC
15106986 CTT
1 CTT
15106989 GTTATCTTTG
Statistics
Matches: 38, Mismatches: 7, Indels: 5
0.76 0.14 0.10
Matches are distributed among these distances:
14 9 0.24
15 27 0.71
16 2 0.05
ACGTcount: A:0.13, C:0.19, G:0.11, T:0.56
Consensus pattern (15 bp):
CTTTATTCTGGATTC
Found at i:15109436 original size:46 final size:46
Alignment explanation
Indices: 15109380--15109552 Score: 203
Period size: 46 Copynumber: 3.7 Consensus size: 46
15109370 TGGTTGAGCA
*
15109380 TCCGAACTCGTTGAGTTGAGTCCGAGTACACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
15109426 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
15109471 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
*
15109519 -CTCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TC-CGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
15109553 GGGGCGGGTT
Statistics
Matches: 108, Mismatches: 9, Indels: 20
0.79 0.07 0.15
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 4 0.04
46 59 0.55
47 29 0.27
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:15109536 original size:93 final size:93
Alignment explanation
Indices: 15109377--15109547 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
15109367 GGATGGTTGA
*
15109377 GCATCCGAACTCGTTGAGTTGAGTCCGAGTACACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTACACTTATGGATGCGAACGTCCGAACTCGTTGAGT
15109442 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
15109470 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CTCGAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTACACTTATGGATGCGAACGTC-CGAACTCGTTGAG
15109534 TTGAGTCCGAGTTC
65 TTGAGTCCGAGTTC
15109548 ACTTAGGGGC
Statistics
Matches: 74, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
92 1 0.01
93 73 0.99
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTACACTTATGGATGCGAACGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:15113403 original size:55 final size:54
Alignment explanation
Indices: 15113295--15113502 Score: 217
Period size: 55 Copynumber: 3.8 Consensus size: 54
15113285 ATTAGGGTTT
* * * *
15113295 AAGGATACCATGTAAGACCATGCCAAGGCATGGCAATCGGTATGGTT-TCTAAGGA
1 AAGGATACCATGTAAGACCATGCCAAGACATGGC-ATTGGTA-AGTTCTATAAGGA
* * *
15113350 AAGGATACCATGTAAGACCATGTCAAGACATGTCATTGATAAGTTACTATAAGGCA
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTT-CTATAAGG-A
* * * *
15113406 AAGG-T-CTCATGTAAGACTATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGGC
1 AAGGATAC-CATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCTATAAGGA
* * *
15113458 AAGGATACCATGTAAGACCATGTCGAGACATGGCAATGGTAAGTT
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTT
15113503 TCAAAAGGAT
Statistics
Matches: 127, Mismatches: 20, Indels: 14
0.79 0.12 0.09
Matches are distributed among these distances:
52 4 0.03
53 41 0.32
54 8 0.06
55 69 0.54
56 5 0.04
ACGTcount: A:0.34, C:0.17, G:0.25, T:0.24
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCTATAAGGA
Found at i:15113501 original size:108 final size:109
Alignment explanation
Indices: 15113303--15113502 Score: 289
Period size: 108 Copynumber: 1.8 Consensus size: 109
15113293 TTAAGGATAC
15113303 CATGTAAGACCATGCCAAGGCATGGCAATCGGTATGGTTTCTAAGGAAAGGATACCATGTAAGAC
1 CATGTAAGACCATGCCAAGGCATGGCAATCGGTA-GGTTTCTAAGGAAAGGATACCATGTAAGAC
* *
15113368 CATGTCAAGACATGTCATTGATAAGTTACTATAAGGCAAAGGTCT
65 CATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTCT
* * *
15113413 CATGTAAGACTATGCCAAGGCATGGC-ATTGGT-GAG-TTCATAAGGCAAGGATACCATGTAAGA
1 CATGTAAGACCATGCCAAGGCATGGCAATCGGTAG-GTTTC-TAAGGAAAGGATACCATGTAAGA
* *
15113475 CCATGTCGAGACATGGCAATGGTAAGTT
64 CCATGTCAAGACATGGCAATGATAAGTT
15113503 TCAAAAGGAT
Statistics
Matches: 81, Mismatches: 7, Indels: 6
0.86 0.07 0.06
Matches are distributed among these distances:
107 4 0.05
108 47 0.58
109 5 0.06
110 25 0.31
ACGTcount: A:0.34, C:0.17, G:0.26, T:0.24
Consensus pattern (109 bp):
CATGTAAGACCATGCCAAGGCATGGCAATCGGTAGGTTTCTAAGGAAAGGATACCATGTAAGACC
ATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTCT
Found at i:15133308 original size:20 final size:20
Alignment explanation
Indices: 15133285--15133334 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 20
15133275 CAGCTCGAAC
*
15133285 CAGCTCACTTGAGCTTAATT
1 CAGCTCACTTGAGCCTAATT
15133305 CAGCTCA-TCTGAGCCTAATT
1 CAGCTCACT-TGAGCCTAATT
* *
15133325 TAGCTTACTT
1 CAGCTCACTT
15133335 TCAGCTCGTT
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
19 1 0.04
20 23 0.92
21 1 0.04
ACGTcount: A:0.24, C:0.26, G:0.14, T:0.36
Consensus pattern (20 bp):
CAGCTCACTTGAGCCTAATT
Found at i:15135835 original size:40 final size:40
Alignment explanation
Indices: 15135783--15136172 Score: 647
Period size: 40 Copynumber: 9.8 Consensus size: 40
15135773 ATTACCACAA
* * ** *
15135783 GCACAATTGCCTTCGGGTCTTAACCCGGGCATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
15135823 GCACGAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
*
15135863 GCACAATTGCCTTC-GGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
15135902 GCACAAATGCCTGCGGGTCTTAGCCCGGATATATCGACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
*
15135942 GCACAAATGCCTGCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
*
15135982 GCACAAATGCCTGCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
15136022 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
**
15136062 GCACAAATGCCCGCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
15136102 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
15136142 GCACAAATGCCTTCGGGTCTTAGCCCGGATA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATA
15136173 AAATTCAAAT
Statistics
Matches: 330, Mismatches: 19, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
39 36 0.11
40 294 0.89
ACGTcount: A:0.24, C:0.30, G:0.22, T:0.24
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
Found at i:15143376 original size:40 final size:40
Alignment explanation
Indices: 15143324--15143714 Score: 631
Period size: 40 Copynumber: 9.8 Consensus size: 40
15143314 ATTACCACAA
* * * *
15143324 GCACAATTGCCTTCGGGTCTTAACCCAGG-CATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCC-GGATATATCAACTC
* *
15143364 GCACGAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
15143404 GCACAATTGCCTTCGGGTCTTAGCCCGGATATATCGACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
15143444 GCACAAATGCCTGCGGGTCTTAGCCCGGATATATCGACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* * *
15143484 GCACAAATGCCTGCGAGTCTTAGCCCAGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
*
15143524 GCACAAATGCCTGCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
15143564 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
*
15143604 GCACAAATGCCTGCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
15143644 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
15143684 GCACAAATGCCTTCGGGTCTTAGCCCGGATA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATA
15143715 AAATTCAAAT
Statistics
Matches: 330, Mismatches: 20, Indels: 2
0.94 0.06 0.01
Matches are distributed among these distances:
39 2 0.01
40 328 0.99
ACGTcount: A:0.24, C:0.30, G:0.22, T:0.24
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
Found at i:15150361 original size:20 final size:20
Alignment explanation
Indices: 15150322--15150366 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
15150312 CAGCTTGAAC
**
15150322 CAGCTCATTTGAGCTTAATT
1 CAGCTCATTTGAGCCCAATT
15150342 CAGCTCATTTGAGCCCAATT
1 CAGCTCATTTGAGCCCAATT
*
15150362 TAGCT
1 CAGCT
15150367 TACTTTCAGC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.24, C:0.24, G:0.16, T:0.36
Consensus pattern (20 bp):
CAGCTCATTTGAGCCCAATT
Found at i:15160057 original size:11 final size:10
Alignment explanation
Indices: 15160025--15160079 Score: 60
Period size: 11 Copynumber: 5.5 Consensus size: 10
15160015 CATGAGATTT
15160025 TGATAT-ACA
1 TGATATGACA
*
15160034 TGATTTGACA
1 TGATATGACA
15160044 TGATATGCACA
1 TGATATG-ACA
*
15160055 TGATATG-TA
1 TGATATGACA
15160064 TGATATGCACA
1 TGATATG-ACA
15160075 TGATA
1 TGATA
15160080 AATTCATATA
Statistics
Matches: 38, Mismatches: 4, Indels: 6
0.79 0.08 0.12
Matches are distributed among these distances:
9 13 0.34
10 9 0.24
11 16 0.42
ACGTcount: A:0.36, C:0.11, G:0.18, T:0.35
Consensus pattern (10 bp):
TGATATGACA
Found at i:15163255 original size:48 final size:48
Alignment explanation
Indices: 15163189--15163327 Score: 197
Period size: 48 Copynumber: 2.9 Consensus size: 48
15163179 GTGAATTGCT
*
15163189 GATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATATCAACGCC
1 GATGCCATGTCCCAAACATGGTCTTACACTAGCTCACATATCAACGCC
* * * * **
15163237 GGTGCTATGTCCCAAACATGGTCTTACACTTGCTCTCATATCATGGCC
1 GATGCCATGTCCCAAACATGGTCTTACACTAGCTCACATATCAACGCC
* *
15163285 GATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATCA
1 GATGCCATGTCCCAAACATGGTCTTACACTAGCTCACATATCA
15163328 CCCAAATGTC
Statistics
Matches: 78, Mismatches: 13, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
48 78 1.00
ACGTcount: A:0.27, C:0.30, G:0.17, T:0.27
Consensus pattern (48 bp):
GATGCCATGTCCCAAACATGGTCTTACACTAGCTCACATATCAACGCC
Found at i:15163684 original size:30 final size:31
Alignment explanation
Indices: 15163645--15163703 Score: 84
Period size: 30 Copynumber: 1.9 Consensus size: 31
15163635 ATAATTCATA
*
15163645 TTTTGACAAAATGACCATTTTGCCCCTAGAC
1 TTTTGACAAAATGACCATTTTACCCCTAGAC
* *
15163676 TTTT-ACAAAATTACTATTTTACCCCTAG
1 TTTTGACAAAATGACCATTTTACCCCTAG
15163704 GCTTGTAAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
30 21 0.84
31 4 0.16
ACGTcount: A:0.31, C:0.24, G:0.08, T:0.37
Consensus pattern (31 bp):
TTTTGACAAAATGACCATTTTACCCCTAGAC
Found at i:15169450 original size:67 final size:64
Alignment explanation
Indices: 15169312--15169570 Score: 220
Period size: 68 Copynumber: 3.9 Consensus size: 64
15169302 ATATAGTTCG
* * * * *
15169312 GCTCTCTTGTAC-ACATGGTGAACAC-TCAGTACCACCCATGTGACCTAGCCA-ATTTATCTTGT
1 GCTCTCTTGT-CTACATGGTGTACACAT-AGAACCACCCATGCGACCTAGCTACATATATCTTGT
15169374 A
64 A
* * * *
15169375 GCTCTCTTGTCTACATGGTGTCCTTCACCTAGAACCACGCATGCGACCTAGCTACATATATCCTG
1 GCTCTCTTGTCTACATGGTG---TACACATAGAACCACCCATGCGACCTAGCTACATATATCTTG
15169440 TA
63 TA
* *
15169442 GCTCTCTTGTCTACATGGTGTACACATAGTATCACCCATGCGACCTAGCTACATAATAATGTCTT
1 GCTCTCTTGTCTACATGGTGTACACATAGAACCACCCATGCGACCTAGCTACAT-AT-A--TCTT
15169507 GTA
62 GTA
* * ** * ** *
15169510 GCTCTCTTGTAC-ACATGATGTGCACCCAGCACCATACATGTGACCTAGCTACATACTATCT
1 GCTCTCTTGT-CTACATGGTGTACACATAGAACCACCCATGCGACCTAGCTACATA-TATCT
15169571 GTATCATCCA
Statistics
Matches: 161, Mismatches: 23, Indels: 22
0.78 0.11 0.11
Matches are distributed among these distances:
62 1 0.01
63 18 0.11
64 29 0.18
65 5 0.03
66 24 0.15
67 33 0.20
68 50 0.31
69 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.16, T:0.30
Consensus pattern (64 bp):
GCTCTCTTGTCTACATGGTGTACACATAGAACCACCCATGCGACCTAGCTACATATATCTTGTA
Found at i:15182687 original size:13 final size:13
Alignment explanation
Indices: 15182669--15182695 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
15182659 GGGCCAATCG
15182669 CACACGGGCGTGT
1 CACACGGGCGTGT
15182682 CACACGGGCGTGT
1 CACACGGGCGTGT
15182695 C
1 C
15182696 CCTATCGAGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.33, G:0.37, T:0.15
Consensus pattern (13 bp):
CACACGGGCGTGT
Found at i:15183089 original size:12 final size:13
Alignment explanation
Indices: 15183053--15183090 Score: 51
Period size: 14 Copynumber: 2.9 Consensus size: 13
15183043 AAATATTTGA
15183053 CTTGTTCTTAATT
1 CTTGTTCTTAATT
*
15183066 ATGTGTTCTTAATT
1 CT-TGTTCTTAATT
15183080 CTTG-TCTTAAT
1 CTTGTTCTTAAT
15183091 ACTCCAGGAT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
12 7 0.32
13 3 0.14
14 12 0.55
ACGTcount: A:0.18, C:0.13, G:0.11, T:0.58
Consensus pattern (13 bp):
CTTGTTCTTAATT
Found at i:15186253 original size:17 final size:17
Alignment explanation
Indices: 15186213--15186254 Score: 50
Period size: 17 Copynumber: 2.4 Consensus size: 17
15186203 AGGCTAATTT
*
15186213 TGGGCCGAAGTGGGTCG
1 TGGGCCCAAGTGGGTCG
15186230 TGTGGCCCAA-TGGGCTCG
1 TG-GGCCCAAGTGGG-TCG
15186248 TGGGCCC
1 TGGGCCC
15186255 CATTCGAGTT
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
17 11 0.50
18 11 0.50
ACGTcount: A:0.10, C:0.26, G:0.45, T:0.19
Consensus pattern (17 bp):
TGGGCCCAAGTGGGTCG
Found at i:15198484 original size:21 final size:20
Alignment explanation
Indices: 15198460--15198498 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
15198450 TTGTAAATGT
15198460 AGTAACATAATTGTTATTTTA
1 AGTAACATAA-TGTTATTTTA
**
15198481 AGTAATTTAATGTTATTT
1 AGTAACATAATGTTATTT
15198499 ATATGATATG
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 8 0.50
21 8 0.50
ACGTcount: A:0.36, C:0.03, G:0.10, T:0.51
Consensus pattern (20 bp):
AGTAACATAATGTTATTTTA
Found at i:15214105 original size:38 final size:38
Alignment explanation
Indices: 15214062--15214137 Score: 143
Period size: 38 Copynumber: 2.0 Consensus size: 38
15214052 ATACAACCAG
*
15214062 ATAGTTGTAGCCCTGGAGGGCTAGCATAAGACAACTTT
1 ATAGTTGTAGCCCTCGAGGGCTAGCATAAGACAACTTT
15214100 ATAGTTGTAGCCCTCGAGGGCTAGCATAAGACAACTTT
1 ATAGTTGTAGCCCTCGAGGGCTAGCATAAGACAACTTT
15214138 CACTTGCTCG
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.29, C:0.20, G:0.25, T:0.26
Consensus pattern (38 bp):
ATAGTTGTAGCCCTCGAGGGCTAGCATAAGACAACTTT
Found at i:15216182 original size:46 final size:46
Alignment explanation
Indices: 15216125--15216215 Score: 119
Period size: 46 Copynumber: 2.0 Consensus size: 46
15216115 GAGAATATGG
**
15216125 ATTCAGGTTCCCAGTTCCTGTATACGTTACAAACTAGAGAATACAA
1 ATTCAGGTTCCCAACTCCTGTATACGTTACAAACTAGAGAATACAA
* * * * *
15216171 ATTCAGGTTCCCAACTCTTGTATATGTTGCGAACTTGAGAATACA
1 ATTCAGGTTCCCAACTCCTGTATACGTTACAAACTAGAGAATACA
15216216 TGTTTACGCT
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
46 38 1.00
ACGTcount: A:0.32, C:0.21, G:0.16, T:0.31
Consensus pattern (46 bp):
ATTCAGGTTCCCAACTCCTGTATACGTTACAAACTAGAGAATACAA
Found at i:15218037 original size:70 final size:70
Alignment explanation
Indices: 15217954--15218298 Score: 552
Period size: 70 Copynumber: 5.0 Consensus size: 70
15217944 TATGCTATTG
* *
15217954 TAAA-TATTGGTTGTCCAAATTAGGACAAATTCATGGTTCTTAGCTAATTAATATGTTGCTATTA
1 TAAATTATTGGTTGTCCAAATTAGGACAAATTCATGGTGCTTAGCTAATTAATATGTTGCTGTTA
15218018 TACTA
66 TACTA
* * *
15218023 TAAATTATTGGTTGTCCAAAATAGGATAAATTCATGGTGCTTAGCTAGTTAATATGTTGCTGTTA
1 TAAATTATTGGTTGTCCAAATTAGGACAAATTCATGGTGCTTAGCTAATTAATATGTTGCTGTTA
*
15218088 TACTT
66 TACTA
15218093 TAAATTATTGGTTGTCCAAATTAGGACAAATTCATGGTGCTTAGCTAATTAATATGCTT-CTGTT
1 TAAATTATTGGTTGTCCAAATTAGGACAAATTCATGGTGCTTAGCTAATTAATATG-TTGCTGTT
*
15218157 ATACTG
65 ATACTA
* * *
15218163 TAAATTATTGGCTGTACAAATTAGGACAAATTTATGGTGCTTAGCTAATTAATATGTTGCTGTTA
1 TAAATTATTGGTTGTCCAAATTAGGACAAATTCATGGTGCTTAGCTAATTAATATGTTGCTGTTA
15218228 TACTA
66 TACTA
* *
15218233 TAAATTATTGGTTGTCCAAATTAGGACAAATTCATGGTG-TTAGCTAATTAAAATGTTGTTGTTA
1 TAAATTATTGGTTGTCCAAATTAGGACAAATTCATGGTGCTTAGCTAATTAATATGTTGCTGTTA
15218297 TA
66 TA
15218299 ATATGAATCG
Statistics
Matches: 254, Mismatches: 19, Indels: 6
0.91 0.07 0.02
Matches are distributed among these distances:
69 31 0.12
70 221 0.87
71 2 0.01
ACGTcount: A:0.32, C:0.10, G:0.17, T:0.41
Consensus pattern (70 bp):
TAAATTATTGGTTGTCCAAATTAGGACAAATTCATGGTGCTTAGCTAATTAATATGTTGCTGTTA
TACTA
Found at i:15223525 original size:25 final size:25
Alignment explanation
Indices: 15223478--15223525 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
15223468 TTATATTATG
* * *
15223478 AAAATGACTATTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
*
15223503 AAAATGACCATTATACCCTTAGG
1 AAAATGACCATTATACCCCTAGG
15223526 GTTTAATTAT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.35, C:0.21, G:0.15, T:0.29
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:15223586 original size:20 final size:20
Alignment explanation
Indices: 15223561--15223647 Score: 140
Period size: 20 Copynumber: 4.3 Consensus size: 20
15223551 GTTTTGGCAT
15223561 ACATGAT-TGATATGATATGC
1 ACATGATATG-TATGATATGC
15223581 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
15223601 TCATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
15223621 ACAAGATATGTATGATATGC
1 ACATGATATGTATGATATGC
15223641 ACATGAT
1 ACATGAT
15223648 GTATTCATAA
Statistics
Matches: 62, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
20 60 0.97
21 2 0.03
ACGTcount: A:0.36, C:0.10, G:0.20, T:0.34
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:15223588 original size:11 final size:10
Alignment explanation
Indices: 15223572--15223647 Score: 59
Period size: 11 Copynumber: 7.5 Consensus size: 10
15223562 CATGATTGAT
15223572 ATGATATGCAC
1 ATGATATGC-C
*
15223583 ATGATATG-T
1 ATGATATGCC
15223592 ATGATATGCTC
1 ATGATATGC-C
*
15223603 ATGATATG-T
1 ATGATATGCC
15223612 ATGATATGCAC
1 ATGATATGC-C
* *
15223623 AAGATATG-T
1 ATGATATGCC
15223632 ATGATATGCAC
1 ATGATATGC-C
15223643 ATGAT
1 ATGAT
15223648 GTATTCATAA
Statistics
Matches: 51, Mismatches: 8, Indels: 12
0.72 0.11 0.17
Matches are distributed among these distances:
9 23 0.45
11 28 0.55
ACGTcount: A:0.36, C:0.11, G:0.20, T:0.34
Consensus pattern (10 bp):
ATGATATGCC
Found at i:15223595 original size:9 final size:9
Alignment explanation
Indices: 15223583--15223639 Score: 60
Period size: 9 Copynumber: 5.9 Consensus size: 9
15223573 TGATATGCAC
15223583 ATGATATGT
1 ATGATATGT
15223592 ATGATATGCT
1 ATGATATG-T
15223602 CATGATATGT
1 -ATGATATGT
*
15223612 ATGATATGCAC
1 ATGATATG--T
*
15223623 AAGATATGT
1 ATGATATGT
15223632 ATGATATG
1 ATGATATG
15223640 CACATGATGT
Statistics
Matches: 40, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
9 23 0.57
10 2 0.05
11 15 0.38
ACGTcount: A:0.35, C:0.07, G:0.21, T:0.37
Consensus pattern (9 bp):
ATGATATGT
Found at i:15223661 original size:40 final size:39
Alignment explanation
Indices: 15223561--15223661 Score: 114
Period size: 40 Copynumber: 2.5 Consensus size: 39
15223551 GTTTTGGCAT
* * *
15223561 ACATGATTGATATGATATGCACATGATATGTATGATATGC
1 ACATGAATG-TATCATATGCACAAGATATGTATGATATGC
* *
15223601 TCATGATATGTATGATATGCACAAGATATGTATGATATGC
1 ACATGA-ATGTATCATATGCACAAGATATGTATGATATGC
15223641 ACATG-ATGTATTCATAATGCA
1 ACATGAATGTA-TCAT-ATGCA
15223662 TTGGGTTAGG
Statistics
Matches: 53, Mismatches: 5, Indels: 6
0.83 0.08 0.09
Matches are distributed among these distances:
38 5 0.09
39 3 0.06
40 43 0.81
41 2 0.04
ACGTcount: A:0.36, C:0.11, G:0.19, T:0.35
Consensus pattern (39 bp):
ACATGAATGTATCATATGCACAAGATATGTATGATATGC
Found at i:15223996 original size:31 final size:31
Alignment explanation
Indices: 15223961--15224024 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
15223951 CGTTTATAGT
*
15223961 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGGAATATGAAATATGA
**
15223992 AAAGGCTTCGGCCCAGGGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGGAATATGAAATATGA
15224023 AA
1 AA
15224025 TATGAAATAT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.38, C:0.16, G:0.25, T:0.22
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGGAATATGAAATATGA
Found at i:15224023 original size:7 final size:7
Alignment explanation
Indices: 15224011--15224035 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
15224001 GGCCCAGGGT
15224011 TATGAAA
1 TATGAAA
15224018 TATGAAA
1 TATGAAA
15224025 TATGAAA
1 TATGAAA
15224032 TATG
1 TATG
15224036 TAAAGGCTTC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.52, C:0.00, G:0.16, T:0.32
Consensus pattern (7 bp):
TATGAAA
Found at i:15231658 original size:20 final size:20
Alignment explanation
Indices: 15231633--15231719 Score: 140
Period size: 20 Copynumber: 4.3 Consensus size: 20
15231623 GTTTTGGTAT
15231633 ACATGAT-TGATATGATATGC
1 ACATGATATG-TATGATATGC
15231653 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
15231673 TCATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
15231693 ACATGATATGTATGATATGT
1 ACATGATATGTATGATATGC
15231713 ACATGAT
1 ACATGAT
15231720 GTATTCATAA
Statistics
Matches: 63, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
20 61 0.97
21 2 0.03
ACGTcount: A:0.34, C:0.09, G:0.20, T:0.37
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:15231660 original size:11 final size:9
Alignment explanation
Indices: 15231644--15231711 Score: 55
Period size: 9 Copynumber: 6.9 Consensus size: 9
15231634 CATGATTGAT
15231644 ATGATATGCAC
1 ATGATATG--C
*
15231655 ATGATATGT
1 ATGATATGC
15231664 ATGATATGCTC
1 ATGATATG--C
*
15231675 ATGATATGT
1 ATGATATGC
15231684 ATGATATGCAC
1 ATGATATG--C
*
15231695 ATGATATGT
1 ATGATATGC
15231704 ATGATATG
1 ATGATATG
15231712 TACATGATGT
Statistics
Matches: 48, Mismatches: 5, Indels: 10
0.76 0.08 0.16
Matches are distributed among these distances:
9 24 0.50
11 24 0.50
ACGTcount: A:0.34, C:0.09, G:0.21, T:0.37
Consensus pattern (9 bp):
ATGATATGC
Found at i:15231667 original size:9 final size:9
Alignment explanation
Indices: 15231655--15231713 Score: 73
Period size: 9 Copynumber: 6.1 Consensus size: 9
15231645 TGATATGCAC
15231655 ATGATATGT
1 ATGATATGT
15231664 ATGATATGCT
1 ATGATATG-T
15231674 CATGATATGT
1 -ATGATATGT
*
15231684 ATGATATGCAC
1 ATGATATG--T
15231695 ATGATATGT
1 ATGATATGT
15231704 ATGATATGT
1 ATGATATGT
15231713 A
1 A
15231714 CATGATGTAT
Statistics
Matches: 44, Mismatches: 2, Indels: 8
0.81 0.04 0.15
Matches are distributed among these distances:
9 26 0.59
10 2 0.05
11 16 0.36
ACGTcount: A:0.34, C:0.07, G:0.20, T:0.39
Consensus pattern (9 bp):
ATGATATGT
Found at i:15231733 original size:40 final size:39
Alignment explanation
Indices: 15231647--15231733 Score: 115
Period size: 40 Copynumber: 2.2 Consensus size: 39
15231637 GATTGATATG
*
15231647 ATATGCACATGATATGTATGATATGCTCATGATATGTATG
1 ATATGCACATGATATGTATGATATGCTCATGA-ATGTATC
15231687 ATATGCACATGATATGTATGATATG-TACATG-ATGTATTC
1 ATATGCACATGATATGTATGATATGCT-CATGAATGTA-TC
15231726 ATAATGCA
1 AT-ATGCA
15231734 ATGGGTTGGG
Statistics
Matches: 43, Mismatches: 1, Indels: 6
0.86 0.02 0.12
Matches are distributed among these distances:
38 5 0.12
39 4 0.09
40 34 0.79
ACGTcount: A:0.34, C:0.10, G:0.18, T:0.37
Consensus pattern (39 bp):
ATATGCACATGATATGTATGATATGCTCATGAATGTATC
Found at i:15231824 original size:24 final size:24
Alignment explanation
Indices: 15231767--15231849 Score: 105
Period size: 25 Copynumber: 3.4 Consensus size: 24
15231757 AGGAAGTGCA
* *
15231767 AAAAGGGCTATGCCCCAGTTTACC
1 AAAAGGGCTTTGCCCCAGTTTATC
15231791 GAAAAGGGCTTTGCCCCAGTTTATC
1 -AAAAGGGCTTTGCCCCAGTTTATC
*
15231816 AAAAGGGCTTTTGCCCCAG-TTATT
1 AAAAGGGC-TTTGCCCCAGTTTATC
15231840 AAAAGAGGCT
1 AAAAG-GGCT
15231850 AGGCCTCCAG
Statistics
Matches: 53, Mismatches: 3, Indels: 5
0.87 0.05 0.08
Matches are distributed among these distances:
24 18 0.34
25 35 0.66
ACGTcount: A:0.29, C:0.23, G:0.23, T:0.25
Consensus pattern (24 bp):
AAAAGGGCTTTGCCCCAGTTTATC
Found at i:15234796 original size:7 final size:7
Alignment explanation
Indices: 15234784--15234809 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
15234774 GTTACTCCAC
15234784 AAGCCCA
1 AAGCCCA
15234791 AAGCCCA
1 AAGCCCA
15234798 AAGCCCA
1 AAGCCCA
15234805 AAGCC
1 AAGCC
15234810 TACATTAAAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.42, C:0.42, G:0.15, T:0.00
Consensus pattern (7 bp):
AAGCCCA
Found at i:15246245 original size:20 final size:19
Alignment explanation
Indices: 15246203--15246246 Score: 52
Period size: 20 Copynumber: 2.3 Consensus size: 19
15246193 AGAAATAGAA
*
15246203 ATGAAATGTGAAATGGATC
1 ATGAAATGTGAAATGAATC
* *
15246222 ATGAAATGGTGAATTGAATT
1 ATGAAAT-GTGAAATGAATC
15246242 ATGAA
1 ATGAA
15246247 TATTAATTGA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
19 7 0.33
20 14 0.67
ACGTcount: A:0.43, C:0.02, G:0.25, T:0.30
Consensus pattern (19 bp):
ATGAAATGTGAAATGAATC
Found at i:15258026 original size:26 final size:26
Alignment explanation
Indices: 15257990--15258071 Score: 155
Period size: 26 Copynumber: 3.2 Consensus size: 26
15257980 TGAAATTCCA
15257990 ATCATGAAACATTTACCTAACCCATT
1 ATCATGAAACATTTACCTAACCCATT
15258016 ATCATGAAACATTTACCTAACCCATT
1 ATCATGAAACATTTACCTAACCCATT
*
15258042 ATCATGGAACATTTACCTAACCCATT
1 ATCATGAAACATTTACCTAACCCATT
15258068 ATCA
1 ATCA
15258072 ATTTGTATCA
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 55 1.00
ACGTcount: A:0.38, C:0.27, G:0.05, T:0.30
Consensus pattern (26 bp):
ATCATGAAACATTTACCTAACCCATT
Found at i:15264846 original size:26 final size:26
Alignment explanation
Indices: 15264817--15264924 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
15264807 TGAAATTCCA
*
15264817 ATCATGGAACATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
15264843 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
15264869 ATCATGAAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
15264895 ATCATGGAACATTTACCAAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
15264921 ATCA
1 ATCA
15264925 ATTTGTATCA
Statistics
Matches: 78, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 78 1.00
ACGTcount: A:0.37, C:0.26, G:0.06, T:0.31
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:15265324 original size:43 final size:42
Alignment explanation
Indices: 15265263--15265412 Score: 153
Period size: 43 Copynumber: 3.5 Consensus size: 42
15265253 ACAATGCCGA
* * *
15265263 TGTCCCGGACATGGTCTTACATGTAATTCAGTATCGATACCT
1 TGTCCCAGACATGGTCTTACACGTAATTCAGTATCGATGCCT
**
15265305 CTGTCCCAGACATGGTCTTACACAAAATT-AGGTA-CGATGCCT
1 -TGTCCCAGACATGGTCTTACACGTAATTCA-GTATCGATGCCT
* * *
15265347 TGTCCCAAACATGGTCTTACACGTAAATCTCA-AATCGAGGCCT
1 TGTCCCAGACATGGTCTTACACGT-AAT-TCAGTATCGATGCCT
*
15265390 ATGTCCCAGACACGGTCTTACAC
1 -TGTCCCAGACATGGTCTTACAC
15265413 AATATATCAG
Statistics
Matches: 89, Mismatches: 12, Indels: 11
0.79 0.11 0.10
Matches are distributed among these distances:
41 21 0.24
42 12 0.13
43 35 0.39
44 21 0.24
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.27
Consensus pattern (42 bp):
TGTCCCAGACATGGTCTTACACGTAATTCAGTATCGATGCCT
Found at i:15271315 original size:68 final size:64
Alignment explanation
Indices: 15271198--15271450 Score: 201
Period size: 68 Copynumber: 3.9 Consensus size: 64
15271188 ATACAGATGG
* * * *
15271198 TATGTAGCTAGGTCACATGTATGGTGCTGA-GTGCACATCATGT-GTACAAGAGAGCTACAAGAC
1 TATGTAGCTAGGTCGCATGTGTGGTACT-ATGTGCACACCATGTAG-ACAAGAGAGCTAC--GAC
15271261 ATTA
62 A-TA
* * **
15271265 TGATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATA
1 T-ATGTAGCTAGGTCGCATGTGTGGTACTATGTGCACACCATGTAGACAAGAGAGCTACGACATA
* * * *
15271330 TATGTAGCTAGGTCGCATGTGTGGTTCTAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGA
1 TATGTAGCTAGGTCGCATGTGTGGTACTA--TG-TGCACACCATGTAGACAAGAGAGCTACGACA
15271395 TA
63 TA
* * * * * **
15271397 AACTG--GCTAGGTCACATGGGTGGTCCTAAGTGTTCACCATGT-GTACAAGAGAGC
1 TA-TGTAGCTAGGTCGCATGTGTGGTACTATGTGCACACCATGTAG-ACAAGAGAGC
15271451 CGAACTATAT
Statistics
Matches: 157, Mismatches: 21, Indels: 20
0.79 0.11 0.10
Matches are distributed among these distances:
62 1 0.01
63 19 0.12
64 27 0.17
65 3 0.02
66 24 0.15
67 33 0.21
68 49 0.31
69 1 0.01
ACGTcount: A:0.29, C:0.17, G:0.30, T:0.25
Consensus pattern (64 bp):
TATGTAGCTAGGTCGCATGTGTGGTACTATGTGCACACCATGTAGACAAGAGAGCTACGACATA
Found at i:15271348 original size:64 final size:64
Alignment explanation
Indices: 15271267--15271450 Score: 212
Period size: 67 Copynumber: 2.8 Consensus size: 64
15271257 AGACATTATG
* *
15271267 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * *
15271331 ATGTAGCTAGGTCGCATGTGTGGTTCTAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
15271396 AA
63 AA
* * * *
15271398 ACTG--GCTAGGTCACATGGGTGGTCCTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAG-ACAAGAGAGC
15271451 CGAACTATAT
Statistics
Matches: 102, Mismatches: 13, Indels: 11
0.81 0.10 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 27 0.26
66 22 0.22
67 31 0.30
68 2 0.02
ACGTcount: A:0.28, C:0.17, G:0.31, T:0.24
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:15271389 original size:67 final size:64
Alignment explanation
Indices: 15271243--15271420 Score: 198
Period size: 67 Copynumber: 2.7 Consensus size: 64
15271233 CATCATGTGT
* * *
15271243 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATG
1 ACAAGAGAGCTAC--GAGA-TAT-ATGTAGCTAGGTCGCATGGGTGGTACTATGAGGACACCATG
15271308 TAG
62 TAG
* * *
15271311 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGTGTGGTTCTAGGTGAAGGACACCATGT
1 ACAAGAGAGCTACGAGATATATGTAGCTAGGTCGCATGGGTGGTACTA--TG-AGGACACCATGT
15271376 AG
63 AG
* *
15271378 ACAAGAGAGCTACGAGATAAACTG--GCTAGGTCACATGGGTGGT
1 ACAAGAGAGCTACGAGATATA-TGTAGCTAGGTCGCATGGGTGGT
15271421 CCTAAGTGTT
Statistics
Matches: 96, Mismatches: 10, Indels: 10
0.83 0.09 0.09
Matches are distributed among these distances:
64 26 0.27
65 3 0.03
66 21 0.22
67 31 0.32
68 15 0.16
ACGTcount: A:0.30, C:0.16, G:0.31, T:0.23
Consensus pattern (64 bp):
ACAAGAGAGCTACGAGATATATGTAGCTAGGTCGCATGGGTGGTACTATGAGGACACCATGTAG
Done.