Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 82679320
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4050000 characters in sequence are not A, C, G, or T
File 55 of 255
Found at i:15621289 original size:26 final size:26
Alignment explanation
Indices: 15621196--15621506 Score: 178
Period size: 27 Copynumber: 11.5 Consensus size: 26
15621186 CTCGATTTAC
* * **
15621196 AAAATTACTAAAATACCCTTAGTTTAC
1 AAAATTACCAAAATA-CCTTGGTTTGT
* * **
15621223 AAAATTACCAAAATACCCTCGATCAGT
1 AAAATTACCAAAATA-CCTTGGTTTGT
* *
15621250 AAAATTACCGAAATACCTTGGTCTGT
1 AAAATTACCAAAATACCTTGGTTTGT
* *
15621276 AAAATTGCTAAAATA-CTCTGGTTTGT
1 AAAATTACCAAAATACCT-TGGTTTGT
* *
15621302 AAAATTACCAAAATACCCCTAGTTTGT
1 AAAATTACCAAAATA-CCTTGGTTTGT
*
15621329 AAAATTACCAAAATACCACTGGTTTGT
1 AAAATTACCAAAATACC-TTGGTTTGT
* * ***
15621356 GAAATTACCGAAATACCCTCAATTTGT
1 AAAATTACCAAAATA-CCTTGGTTTGT
* * *
15621383 AAAATTACCAAAATACCCCTGATTTAT
1 AAAATTACCAAAATA-CCTTGGTTTGT
* *
15621410 AAAATTA-CAGAAATACCCTTTGACTTTCT
1 AAAATTACCA-AAATA-CC-TTG-GTTTGT
* **
15621439 AAAAATTA-TAGAAATACCATTGGTTTAC
1 -AAAATTACCA-AAATACC-TTGGTTTGT
**
15621467 AAAATTACTGAAATACCCTTGGTTTGT
1 AAAATTACCAAAATA-CCTTGGTTTGT
* *
15621494 AGATTTACCAAAA
1 AAAATTACCAAAA
15621507 CACCCTTTTA
Statistics
Matches: 225, Mismatches: 48, Indels: 22
0.76 0.16 0.07
Matches are distributed among these distances:
25 2 0.01
26 44 0.20
27 145 0.64
28 11 0.05
29 9 0.04
30 14 0.06
ACGTcount: A:0.41, C:0.19, G:0.10, T:0.31
Consensus pattern (26 bp):
AAAATTACCAAAATACCTTGGTTTGT
Found at i:15621575 original size:27 final size:27
Alignment explanation
Indices: 15621536--15621604 Score: 86
Period size: 27 Copynumber: 2.6 Consensus size: 27
15621526 GACTAAAATA
*
15621536 CCCCTATTA-GGTAAAAAGGCCGTAAAG
1 CCCCTA-TAGGGTAAAAAGACCGTAAAG
* **
15621563 CCCCTGTAGGGTAAAGTGACCGTAAAG
1 CCCCTATAGGGTAAAAAGACCGTAAAG
15621590 CCCCTATAGGGTAAA
1 CCCCTATAGGGTAAA
15621605 GTGACTGTAA
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
26 2 0.06
27 34 0.94
ACGTcount: A:0.33, C:0.23, G:0.25, T:0.19
Consensus pattern (27 bp):
CCCCTATAGGGTAAAAAGACCGTAAAG
Found at i:15621631 original size:27 final size:27
Alignment explanation
Indices: 15621555--15621624 Score: 106
Period size: 27 Copynumber: 2.6 Consensus size: 27
15621545 GGTAAAAAGG
15621555 CCGTAAAGCCCCTGTAGGGTAAAGTGA
1 CCGTAAAGCCCCTGTAGGGTAAAGTGA
*
15621582 CCGTAAAGCCCCTATAGGGTAAAGTGA
1 CCGTAAAGCCCCTGTAGGGTAAAGTGA
*
15621609 CTGTAATA-CCCCTGTA
1 CCGTAA-AGCCCCTGTA
15621625 TAGTAAAATG
Statistics
Matches: 39, Mismatches: 3, Indels: 2
0.89 0.07 0.05
Matches are distributed among these distances:
27 38 0.97
28 1 0.03
ACGTcount: A:0.30, C:0.24, G:0.24, T:0.21
Consensus pattern (27 bp):
CCGTAAAGCCCCTGTAGGGTAAAGTGA
Found at i:15622502 original size:24 final size:25
Alignment explanation
Indices: 15622445--15622513 Score: 104
Period size: 25 Copynumber: 2.8 Consensus size: 25
15622435 ACGAAGTGCT
* *
15622445 AAAAGGGCTATGCCCCAATTTACCA
1 AAAAGGGCTTTGCCCCAGTTTACCA
*
15622470 AAAAGGGCTTTGCCCCAGTTTATC-
1 AAAAGGGCTTTGCCCCAGTTTACCA
15622494 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
15622514 ATTAAAAAAG
Statistics
Matches: 41, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
24 20 0.49
25 21 0.51
ACGTcount: A:0.29, C:0.26, G:0.20, T:0.25
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCA
Found at i:15622521 original size:24 final size:24
Alignment explanation
Indices: 15622445--15622526 Score: 85
Period size: 24 Copynumber: 3.4 Consensus size: 24
15622435 ACGAAGTGCT
* * **
15622445 AAAAGGGCTATGCCCCAATTTACCA
1 AAAAGGGCTTTGCCCC-AGTTATTA
*
15622470 AAAAGGGCTTTGCCCCAGTT-TATC
1 AAAAGGGCTTTGCCCCAGTTAT-TA
15622494 AAAAGGGCTTTGCCCCAGTTATTA
1 AAAAGGGCTTTGCCCCAGTTATTA
*
15622518 AAAAAGGCT
1 AAAAGGGCT
15622527 AGGCCTCCAG
Statistics
Matches: 48, Mismatches: 7, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
24 32 0.67
25 16 0.33
ACGTcount: A:0.33, C:0.23, G:0.20, T:0.24
Consensus pattern (24 bp):
AAAAGGGCTTTGCCCCAGTTATTA
Found at i:15622767 original size:31 final size:31
Alignment explanation
Indices: 15622733--15622872 Score: 235
Period size: 31 Copynumber: 4.5 Consensus size: 31
15622723 GTTTACAGTA
*
15622733 AAGGCTTCGGCCCAGTGATATGATTTATGAA
1 AAGGCTTCGGCCCAGTGATATGATTTATGAT
* * *
15622764 AAGGCTTCAGCCCAGAGATATAATTTATGAT
1 AAGGCTTCGGCCCAGTGATATGATTTATGAT
*
15622795 AAGGCTTCAGCCCAGTGATATGATTTATGAT
1 AAGGCTTCGGCCCAGTGATATGATTTATGAT
15622826 AAGGCTTCGGCCCAGTGATATGATTTATGAT
1 AAGGCTTCGGCCCAGTGATATGATTTATGAT
15622857 AAGGCTTCGGCCCAGT
1 AAGGCTTCGGCCCAGT
15622873 AACCGTTAAA
Statistics
Matches: 102, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 102 1.00
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (31 bp):
AAGGCTTCGGCCCAGTGATATGATTTATGAT
Found at i:15623662 original size:26 final size:26
Alignment explanation
Indices: 15623634--15623725 Score: 96
Period size: 26 Copynumber: 3.6 Consensus size: 26
15623624 TGTTACACTG
***
15623634 ACCAACTCAAACTTAAGGGTCCTTGG
1 ACCAACTCAAACTTAAGGGTCCTCAA
* ** *
15623660 ACCCACTC-AACTTAAGGAACCTCCA
1 ACCAACTCAAACTTAAGGGTCCTCAA
*
15623685 ACCAACTCAAACTCAAGGGTCCTCAA
1 ACCAACTCAAACTTAAGGGTCCTCAA
*
15623711 ACCCACTCAAACTTA
1 ACCAACTCAAACTTA
15623726 GGAGACCTCT
Statistics
Matches: 52, Mismatches: 13, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
25 19 0.37
26 33 0.63
ACGTcount: A:0.36, C:0.35, G:0.11, T:0.18
Consensus pattern (26 bp):
ACCAACTCAAACTTAAGGGTCCTCAA
Found at i:15623707 original size:51 final size:52
Alignment explanation
Indices: 15623634--15623734 Score: 143
Period size: 51 Copynumber: 2.0 Consensus size: 52
15623624 TGTTACACTG
* ***
15623634 ACCAACTCAAACTTAAGGGTCCTTGGACCCACTC-AACTTAAGGA-ACCTCCA
1 ACCAACTCAAACTCAAGGGTCCTCAAACCCACTCAAACTT-AGGAGACCTCCA
15623685 ACCAACTCAAACTCAAGGGTCCTCAAACCCACTCAAACTTAGGAGACCTC
1 ACCAACTCAAACTCAAGGGTCCTCAAACCCACTCAAACTTAGGAGACCTC
15623735 TGACCCATCT
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
51 34 0.77
52 10 0.23
ACGTcount: A:0.35, C:0.35, G:0.13, T:0.18
Consensus pattern (52 bp):
ACCAACTCAAACTCAAGGGTCCTCAAACCCACTCAAACTTAGGAGACCTCCA
Found at i:15623740 original size:26 final size:26
Alignment explanation
Indices: 15623631--15623741 Score: 93
Period size: 26 Copynumber: 4.3 Consensus size: 26
15623621 GGGTGTTACA
* *
15623631 CTGACCAACTCAAACTTAAGGGTCCT
1 CTGACCCACTCAAACTTAAGGGACCT
*
15623657 -TGGACCCACTC-AACTTAAGGAACCT
1 CT-GACCCACTCAAACTTAAGGGACCT
** * * *
15623682 CCAACCAACTCAAACTCAAGGGTCCT
1 CTGACCCACTCAAACTTAAGGGACCT
**
15623708 CAAACCCACTCAAACTT-AGGAGACCT
1 CTGACCCACTCAAACTTAAGG-GACCT
15623734 CTGACCCA
1 CTGACCCA
15623742 TCTTGACTCC
Statistics
Matches: 66, Mismatches: 15, Indels: 8
0.74 0.17 0.09
Matches are distributed among these distances:
25 23 0.35
26 43 0.65
ACGTcount: A:0.33, C:0.35, G:0.14, T:0.18
Consensus pattern (26 bp):
CTGACCCACTCAAACTTAAGGGACCT
Found at i:15625726 original size:9 final size:9
Alignment explanation
Indices: 15625714--15625757 Score: 52
Period size: 9 Copynumber: 4.7 Consensus size: 9
15625704 ATTAATTCAT
15625714 TAATTAAAC
1 TAATTAAAC
15625723 TAATTAAAC
1 TAATTAAAC
* *
15625732 AAATTTAAC
1 TAATTAAAC
15625741 TAAATCTAAAC
1 T-AAT-TAAAC
15625752 TAATTA
1 TAATTA
15625758 TAATTAATAG
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
9 18 0.62
10 6 0.21
11 5 0.17
ACGTcount: A:0.55, C:0.11, G:0.00, T:0.34
Consensus pattern (9 bp):
TAATTAAAC
Found at i:15626690 original size:2 final size:2
Alignment explanation
Indices: 15626683--15626751 Score: 138
Period size: 2 Copynumber: 34.5 Consensus size: 2
15626673 TTTGCTTATA
15626683 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
15626725 TG TG TG TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG TG T
15626752 TGCACCCGAA
Statistics
Matches: 67, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 67 1.00
ACGTcount: A:0.00, C:0.00, G:0.49, T:0.51
Consensus pattern (2 bp):
TG
Found at i:15628642 original size:33 final size:35
Alignment explanation
Indices: 15628547--15628643 Score: 89
Period size: 33 Copynumber: 2.8 Consensus size: 35
15628537 TTAATATTTT
*
15628547 AATATATGAAATATAAATTTTAAATATTT--TTAAGC
1 AATATAT-AAAT-TATATTTTAAATATTTAATTAAGC
* *
15628582 AATAAATATTAATTAT-TTATAAA-ATTTAATT-AG-
1 AAT--ATATAAATTATATTTTAAATATTTAATTAAGC
15628615 AATATATAAATTATATTTTAAATATTTAA
1 AATATATAAATTATATTTTAAATATTTAA
15628644 ATATAACCAT
Statistics
Matches: 51, Mismatches: 5, Indels: 14
0.73 0.07 0.20
Matches are distributed among these distances:
31 10 0.20
32 6 0.12
33 13 0.25
34 8 0.16
35 7 0.14
36 3 0.06
37 4 0.08
ACGTcount: A:0.51, C:0.01, G:0.03, T:0.45
Consensus pattern (35 bp):
AATATATAAATTATATTTTAAATATTTAATTAAGC
Found at i:15633887 original size:34 final size:34
Alignment explanation
Indices: 15633849--15633916 Score: 82
Period size: 34 Copynumber: 2.0 Consensus size: 34
15633839 TCAGTTAAAT
* * *
15633849 GCAGTTTGGGCATAAGTCCATTCCAGTTTCAGTA
1 GCAGTTCGAGCATAAGCCCATTCCAGTTTCAGTA
* **
15633883 GCAGTTCGAGCTTAAGCCCATTTTAGTTTCAGTA
1 GCAGTTCGAGCATAAGCCCATTCCAGTTTCAGTA
15633917 TCAGATATGC
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
34 28 1.00
ACGTcount: A:0.24, C:0.21, G:0.22, T:0.34
Consensus pattern (34 bp):
GCAGTTCGAGCATAAGCCCATTCCAGTTTCAGTA
Found at i:15635321 original size:41 final size:41
Alignment explanation
Indices: 15635264--15635348 Score: 152
Period size: 41 Copynumber: 2.1 Consensus size: 41
15635254 CCCATTCTGA
*
15635264 TATGGTTTTACAAATAATTTAATATAAGCCTGCTGAACAAG
1 TATGGTTTTAAAAATAATTTAATATAAGCCTGCTGAACAAG
*
15635305 TATGGTTTTAAAAATAATTTAATATAAGCCTGTTGAACAAG
1 TATGGTTTTAAAAATAATTTAATATAAGCCTGCTGAACAAG
15635346 TAT
1 TAT
15635349 AAGGATTAAG
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 42 1.00
ACGTcount: A:0.40, C:0.09, G:0.14, T:0.36
Consensus pattern (41 bp):
TATGGTTTTAAAAATAATTTAATATAAGCCTGCTGAACAAG
Found at i:15636579 original size:28 final size:28
Alignment explanation
Indices: 15636539--15636647 Score: 146
Period size: 28 Copynumber: 3.9 Consensus size: 28
15636529 GCTATGTACA
* **
15636539 GCACTTAGTGTGCGAGACATTGAGAATG
1 GCACTTAGTGTGCGAGATATTGAGTGTG
* *
15636567 GCACTTTGTGTGCAAGATATTGAGTGTG
1 GCACTTAGTGTGCGAGATATTGAGTGTG
*
15636595 GCACTTAGTGTGCGAGATATCGAGTGTG
1 GCACTTAGTGTGCGAGATATTGAGTGTG
* *
15636623 GCAGTTAGTGTGCGAGATATCGAGT
1 GCACTTAGTGTGCGAGATATTGAGT
15636648 ATTCAACGGC
Statistics
Matches: 72, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 72 1.00
ACGTcount: A:0.24, C:0.13, G:0.34, T:0.29
Consensus pattern (28 bp):
GCACTTAGTGTGCGAGATATTGAGTGTG
Found at i:15641417 original size:48 final size:47
Alignment explanation
Indices: 15641354--15641470 Score: 135
Period size: 47 Copynumber: 2.5 Consensus size: 47
15641344 TTCATTCGGA
* * * *
15641354 TATGGGTCATGGTATAGGTATTTCAGAGAGGAGTTACCTTGTTTTGAC
1 TATGGGCCATGGTATAGGTA-CTCAGAGAGAAGTTACCTTGATTTGAC
* * * * *
15641402 TATGGGCCATAGTATAGGTACTCTGGGATAAGTTACCTTGATTTGGC
1 TATGGGCCATGGTATAGGTACTCAGAGAGAAGTTACCTTGATTTGAC
*
15641449 TATGGGCCATGGTATAGTTACT
1 TATGGGCCATGGTATAGGTACT
15641471 TATCAATTGT
Statistics
Matches: 58, Mismatches: 11, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
47 40 0.69
48 18 0.31
ACGTcount: A:0.23, C:0.13, G:0.28, T:0.36
Consensus pattern (47 bp):
TATGGGCCATGGTATAGGTACTCAGAGAGAAGTTACCTTGATTTGAC
Found at i:15662664 original size:59 final size:59
Alignment explanation
Indices: 15662592--15662709 Score: 236
Period size: 59 Copynumber: 2.0 Consensus size: 59
15662582 TGAGTCTGTG
15662592 TCTGTTCATCATGGTGGAGTCCAAAAAGAGTTTGTCGAAACTTTAATCATGATCTCTGA
1 TCTGTTCATCATGGTGGAGTCCAAAAAGAGTTTGTCGAAACTTTAATCATGATCTCTGA
15662651 TCTGTTCATCATGGTGGAGTCCAAAAAGAGTTTGTCGAAACTTTAATCATGATCTCTGA
1 TCTGTTCATCATGGTGGAGTCCAAAAAGAGTTTGTCGAAACTTTAATCATGATCTCTGA
15662710 AAGAAAAGTC
Statistics
Matches: 59, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
59 59 1.00
ACGTcount: A:0.29, C:0.17, G:0.20, T:0.34
Consensus pattern (59 bp):
TCTGTTCATCATGGTGGAGTCCAAAAAGAGTTTGTCGAAACTTTAATCATGATCTCTGA
Found at i:15662960 original size:28 final size:28
Alignment explanation
Indices: 15662928--15663038 Score: 97
Period size: 27 Copynumber: 4.0 Consensus size: 28
15662918 GAACACACCA
*
15662928 GAAAATGAAAGCCTTTAGGGCAACCTAT
1 GAAAATGAAAGCCTTTAGGGCAATCTAT
* * * *
15662956 GAAAATAAAAGCCTTTATGGAAATCGAT
1 GAAAATGAAAGCCTTTAGGGCAATCTAT
*
15662984 G-AAATGGAAGCCTTT-GTGGCAATCTAT
1 GAAAATGAAAGCCTTTAG-GGCAATCTAT
*
15663011 G-AAAT-ATAAGCCTTT-GTGGTAATCTAT
1 GAAAATGA-AAGCCTTTAG-GGCAATCTAT
15663038 G
1 G
15663039 GAATGGAATG
Statistics
Matches: 69, Mismatches: 12, Indels: 5
0.80 0.14 0.06
Matches are distributed among these distances:
27 45 0.65
28 24 0.35
ACGTcount: A:0.37, C:0.14, G:0.22, T:0.28
Consensus pattern (28 bp):
GAAAATGAAAGCCTTTAGGGCAATCTAT
Found at i:15662996 original size:27 final size:27
Alignment explanation
Indices: 15662964--15663052 Score: 106
Period size: 27 Copynumber: 3.3 Consensus size: 27
15662954 ATGAAAATAA
* *
15662964 AAGCCTTTATGGAAATCGATGAAATGG
1 AAGCCTTTGTGGAAATCTATGAAATGG
* **
15662991 AAGCCTTTGTGGCAATCTATGAAATAT
1 AAGCCTTTGTGGAAATCTATGAAATGG
* *
15663018 AAGCCTTTGTGGTAATCTATGGAATGG
1 AAGCCTTTGTGGAAATCTATGAAATGG
15663045 AATGCCTT
1 AA-GCCTT
15663053 CATGACGCAT
Statistics
Matches: 52, Mismatches: 9, Indels: 1
0.84 0.15 0.02
Matches are distributed among these distances:
27 47 0.90
28 5 0.10
ACGTcount: A:0.31, C:0.13, G:0.24, T:0.31
Consensus pattern (27 bp):
AAGCCTTTGTGGAAATCTATGAAATGG
Found at i:15663044 original size:54 final size:55
Alignment explanation
Indices: 15662930--15663052 Score: 151
Period size: 54 Copynumber: 2.2 Consensus size: 55
15662920 ACACACCAGA
*
15662930 AAATGAAAGCCTTTAGGGCAACCTATGAAAATAAAAGCCTTTATGGAAATCGATG
1 AAATGGAAGCCTTTAGGGCAACCTATGAAAATAAAAGCCTTTATGGAAATCGATG
* * * * *
15662985 AAATGGAAGCCTTT-GTGGCAATCTATG-AAATATAAGCCTTTGTGGTAATCTATG
1 AAATGGAAGCCTTTAG-GGCAACCTATGAAAATAAAAGCCTTTATGGAAATCGATG
*
15663039 GAATGGAATGCCTT
1 AAATGGAA-GCCTT
15663053 CATGACGCAT
Statistics
Matches: 59, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
54 31 0.53
55 28 0.47
ACGTcount: A:0.36, C:0.14, G:0.22, T:0.28
Consensus pattern (55 bp):
AAATGGAAGCCTTTAGGGCAACCTATGAAAATAAAAGCCTTTATGGAAATCGATG
Found at i:15664768 original size:53 final size:53
Alignment explanation
Indices: 15664688--15665058 Score: 363
Period size: 53 Copynumber: 7.0 Consensus size: 53
15664678 GAAAGAGAAA
* * * * *
15664688 AATGGTAAGTATGACAAAACCTAGAAGAATTATATGTACGACTAACTATGAAG
1 AATGGTAAATATGACAAACCCTAGAAGAATGATATGTATGACTAACTTTGAAG
* * * *
15664741 AATGGTAAATATTACAAACCCTAGAAGAATGATATGTATGGCTAAATTTGAAA
1 AATGGTAAATATGACAAACCCTAGAAGAATGATATGTATGACTAACTTTGAAG
* * *
15664794 AATGGTAAATACGAAAAACCCGAGAAGAATGATATGTATAGA-TAACTTTGAAG
1 AATGGTAAATATGACAAACCCTAGAAGAATGATATGTAT-GACTAACTTTGAAG
* * * *
15664847 AATGGTAAATATGGA-AAACCCTAAAAGAATGATATGTATGGCTAACTCTGAGG
1 AATGGTAAATAT-GACAAACCCTAGAAGAATGATATGTATGACTAACTTTGAAG
* * * * * * * *
15664900 AACGGTAAGTATGGCAAACCCTGGAAAAATAATATGTATGGCTAACTTTTAAG
1 AATGGTAAATATGACAAACCCTAGAAGAATGATATGTATGACTAACTTTGAAG
* * * * * *
15664953 AATAGTAAATAAGGCAAACCCTGGAAGAATGATATGTAT-ACCTAACTCTGAGG
1 AATGGTAAATATGACAAACCCTAGAAGAATGATATGTATGA-CTAACTTTGAAG
* * * * *
15665006 AATGGTAAGTATGGCAAACCCT-GAAGGAATGATATGTGTGACTAGCTCTGAAG
1 AATGGTAAATATGACAAACCCTAGAA-GAATGATATGTATGACTAACTTTGAAG
15665059 GATTGGTAGG
Statistics
Matches: 263, Mismatches: 48, Indels: 14
0.81 0.15 0.04
Matches are distributed among these distances:
52 5 0.02
53 254 0.97
54 4 0.02
ACGTcount: A:0.42, C:0.12, G:0.21, T:0.25
Consensus pattern (53 bp):
AATGGTAAATATGACAAACCCTAGAAGAATGATATGTATGACTAACTTTGAAG
Found at i:15664980 original size:159 final size:159
Alignment explanation
Indices: 15664688--15665058 Score: 431
Period size: 159 Copynumber: 2.3 Consensus size: 159
15664678 GAAAGAGAAA
* * * * * *
15664688 AATGGTAAGTAT-GACAAAACCTAGAAGAATTATATGTACGACTAACTATGAAGAATGGTAAATA
1 AATGGTAAGTATGGA-AAACCCTAAAAGAATGATATGTATGACTAACTCTGAAGAACGGTAAATA
* * * * *
15664752 TTACAAACCCTAGAAGAATGATATGTATGGCTAAATTTGAAAAATGGTAAATACGAAAAACCCGA
65 TGACAAACCCTAGAAAAATAATATGTATGGCTAAATTTGAAAAATAGTAAATAAGAAAAACCCGA
* *
15664817 GAAGAATGATATGTATAGATAACTTTGAAG
130 GAAGAATGATATGTATACATAACTCTGAAG
* * * *
15664847 AATGGTAAATATGGAAAACCCTAAAAGAATGATATGTATGGCTAACTCTGAGGAACGGTAAGTAT
1 AATGGTAAGTATGGAAAACCCTAAAAGAATGATATGTATGACTAACTCTGAAGAACGGTAAATAT
* * * * * **
15664912 GGCAAACCCTGGAAAAATAATATGTATGGCTAACTTTTAAGAATAGTAAATAAGGCAAACCCTG-
66 GACAAACCCTAGAAAAATAATATGTATGGCTAAATTTGAAAAATAGTAAATAAGAAAAACCC-GA
* *
15664976 GAAGAATGATATGTATACCTAACTCTGAGG
130 GAAGAATGATATGTATACATAACTCTGAAG
* * * * *
15665006 AATGGTAAGTATGGCAAACCCTGAAGGAATGATATGTGTGACTAGCTCTGAAG
1 AATGGTAAGTATGGAAAACCCTAAAAGAATGATATGTATGACTAACTCTGAAG
15665059 GATTGGTAGG
Statistics
Matches: 176, Mismatches: 34, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
159 173 0.98
160 3 0.02
ACGTcount: A:0.42, C:0.12, G:0.21, T:0.25
Consensus pattern (159 bp):
AATGGTAAGTATGGAAAACCCTAAAAGAATGATATGTATGACTAACTCTGAAGAACGGTAAATAT
GACAAACCCTAGAAAAATAATATGTATGGCTAAATTTGAAAAATAGTAAATAAGAAAAACCCGAG
AAGAATGATATGTATACATAACTCTGAAG
Found at i:15670833 original size:10 final size:10
Alignment explanation
Indices: 15670820--15670855 Score: 56
Period size: 10 Copynumber: 3.7 Consensus size: 10
15670810 TAATTTTTAA
15670820 TTCTTTTATT
1 TTCTTTTATT
15670830 TTC-TTTATT
1 TTCTTTTATT
*
15670839 TTCTTTTACT
1 TTCTTTTATT
15670849 TTCTTTT
1 TTCTTTT
15670856 TCTATATTTC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
9 9 0.38
10 15 0.62
ACGTcount: A:0.08, C:0.14, G:0.00, T:0.78
Consensus pattern (10 bp):
TTCTTTTATT
Found at i:15672338 original size:6 final size:6
Alignment explanation
Indices: 15672307--15672337 Score: 55
Period size: 6 Copynumber: 5.3 Consensus size: 6
15672297 CCGGTCTCTA
15672307 TTCATT TTCATT TTCATT TTCATT TT-ATT TT
1 TTCATT TTCATT TTCATT TTCATT TTCATT TT
15672338 TTTTATCTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
5 5 0.20
6 20 0.80
ACGTcount: A:0.16, C:0.13, G:0.00, T:0.71
Consensus pattern (6 bp):
TTCATT
Found at i:15673455 original size:15 final size:15
Alignment explanation
Indices: 15673435--15673468 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
15673425 TTTATTTTTG
* *
15673435 TTATTTTTGCTCGTA
1 TTATTTTTACTCGCA
15673450 TTATTTTTACTCGCA
1 TTATTTTTACTCGCA
15673465 TTAT
1 TTAT
15673469 CGTAATTGTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.18, C:0.15, G:0.09, T:0.59
Consensus pattern (15 bp):
TTATTTTTACTCGCA
Found at i:15678833 original size:24 final size:23
Alignment explanation
Indices: 15678796--15678843 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 23
15678786 TACTTCACTT
*
15678796 AGAAAAAAAGAAAATTAATGAAA
1 AGAAAAAAAGAAAATGAATGAAA
* *
15678819 AGAAGAAAAGAAAAATGAGTGAAA
1 AGAAAAAAAG-AAAATGAATGAAA
15678843 A
1 A
15678844 AAGGAGAGGC
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
23 9 0.43
24 12 0.57
ACGTcount: A:0.71, C:0.00, G:0.19, T:0.10
Consensus pattern (23 bp):
AGAAAAAAAGAAAATGAATGAAA
Found at i:15680221 original size:86 final size:87
Alignment explanation
Indices: 15680072--15680252 Score: 292
Period size: 86 Copynumber: 2.1 Consensus size: 87
15680062 ATCAGTAAAA
*
15680072 ATCAAAGACAAACCTTGCCTCTCTCGTTTGTAGCAGAGCTGGTTGAAGATAGCAAATCTTGCCTT
1 ATCAAAGACAAACCTTGCCTCTCTCGTTTGTAGCAGAGCAGGTTGAAGATAGCAAATCTTGCCTT
15680137 CCTGCA-TTGACAGCGAAGCAG
66 CCTGCATTTGACAGCGAAGCAG
* * * *
15680158 ATCGAAGACAAACCTTGCCTCTCTCGTTTGTAGCAGAGCAGGTTGAATATTGCAGATCTTGCCTT
1 ATCAAAGACAAACCTTGCCTCTCTCGTTTGTAGCAGAGCAGGTTGAAGATAGCAAATCTTGCCTT
* *
15680223 CCTGTATTTGGCAGCGAAGCAG
66 CCTGCATTTGACAGCGAAGCAG
15680245 ATCAAAGA
1 ATCAAAGA
15680253 TGGCAGATTT
Statistics
Matches: 86, Mismatches: 8, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
86 65 0.76
87 21 0.24
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.27
Consensus pattern (87 bp):
ATCAAAGACAAACCTTGCCTCTCTCGTTTGTAGCAGAGCAGGTTGAAGATAGCAAATCTTGCCTT
CCTGCATTTGACAGCGAAGCAG
Found at i:15680525 original size:95 final size:95
Alignment explanation
Indices: 15680243--15680533 Score: 492
Period size: 95 Copynumber: 3.0 Consensus size: 95
15680233 GCAGCGAAGC
15680243 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
*
15680308 CTCCCTGCATTTGGCAGTGGAATAGATTGA
66 CTCCCTGTATTTGGCAGTGGAATAGATTGA
* * *
15680338 AGATCAAAGATGGCAGATTTTACCTCCTTGTGACTATAGTGGAGTATATTGAAGCCGATAACTCT
1 AGATCAAAGATGGCAGATTTTACCTCC--CTGACTACAGTGGAGTACATTGAAGCCGATAACTCT
*
15680403 ATCTCCCAGTATTTGGCAGTGGAATAGATTGA
64 ATCTCCCTGTATTTGGCAGTGGAATAGATTGA
* * *
15680435 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGAGGAGTACATAGAAGTCGATAACTCTAT
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
15680500 CTCCCTGTATTTGGCAGTGGAATAGATTGA
66 CTCCCTGTATTTGGCAGTGGAATAGATTGA
15680530 AGAT
1 AGAT
15680534 TACAGATCTT
Statistics
Matches: 182, Mismatches: 12, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
95 92 0.51
97 90 0.49
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.29
Consensus pattern (95 bp):
AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
CTCCCTGTATTTGGCAGTGGAATAGATTGA
Found at i:15680573 original size:46 final size:46
Alignment explanation
Indices: 15680500--15680732 Score: 158
Period size: 46 Copynumber: 5.2 Consensus size: 46
15680490 ATAACTCTAT
* *
15680500 CTCCCTGTATTTGGCAGTGGAA-TAGATTGAAGATTACAGATCTTGC
1 CTCCCTGTATTTGGCAG-AGAAGTAGATTGAAGATGACAGATCTTGC
* * * * * *
15680546 CTTCCTGTATTTGGCAGAGAAGCAGATTGATGATGGCAGATTTTAC
1 CTCCCTGTATTTGGCAGAGAAGTAGATTGAAGATGACAGATCTTGC
* * * * * ** *
15680592 CTCCCTG-A-CT-ACAGTGGAGTACATTGAAGCCGATA-ACTCTAT--
1 CTCCCTGTATTTGGCAGAGAAGTAGATTGAAGATGACAGA-TCT-TGC
* *
15680634 CTCCCTGTATTTGGCAGTGGAA-TAGATTGAAGATTACAGATCTTGC
1 CTCCCTGTATTTGGCAG-AGAAGTAGATTGAAGATGACAGATCTTGC
* * * * * *
15680680 CTTCCTGTATTTGGCAGAGAAGTAGATCGAATATGCCAGATTTTAC
1 CTCCCTGTATTTGGCAGAGAAGTAGATTGAAGATGACAGATCTTGC
15680726 CTCCCTG
1 CTCCCTG
15680733 AGATTACAGT
Statistics
Matches: 137, Mismatches: 39, Indels: 22
0.69 0.20 0.11
Matches are distributed among these distances:
42 8 0.06
43 18 0.13
44 4 0.03
45 24 0.18
46 83 0.61
ACGTcount: A:0.26, C:0.20, G:0.23, T:0.31
Consensus pattern (46 bp):
CTCCCTGTATTTGGCAGAGAAGTAGATTGAAGATGACAGATCTTGC
Found at i:15680669 original size:134 final size:135
Alignment explanation
Indices: 15680435--15680758 Score: 537
Period size: 134 Copynumber: 2.4 Consensus size: 135
15680425 AATAGATTGA
* * * *
15680435 AGATC-AAAGATGGCAGATTTTACCTCCCTGACTACAGAGGAGTACATAGAAGTCGATAACTCTA
1 AGATCGAATGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTA
15680499 TCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTACAGATCTTGCCTTCCTGTATTTGGCAGA
66 TCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTACAGATCTTGCCTTCCTGTATTTGGCAGA
15680564 GAAGC
131 GAAGC
*
15680569 AGATTG-ATGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTA
1 AGATCGAATGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTA
15680633 TCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTACAGATCTTGCCTTCCTGTATTTGGCAGA
66 TCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTACAGATCTTGCCTTCCTGTATTTGGCAGA
*
15680698 GAAGT
131 GAAGC
* *
15680703 AGATCGAAT-ATGCCAGATTTTACCTCCCTGAGATTACAGTGGAGTACATTGAAGCC
1 AGATCGAATGATGGCAGATTTTACCTCCCT--GACTACAGTGGAGTACATTGAAGCC
15680759 AGTAATCTTA
Statistics
Matches: 177, Mismatches: 9, Indels: 6
0.92 0.05 0.03
Matches are distributed among these distances:
134 151 0.85
135 2 0.01
136 24 0.14
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.29
Consensus pattern (135 bp):
AGATCGAATGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTA
TCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTACAGATCTTGCCTTCCTGTATTTGGCAGA
GAAGC
Found at i:15680786 original size:134 final size:132
Alignment explanation
Indices: 15680443--15680806 Score: 459
Period size: 134 Copynumber: 2.7 Consensus size: 132
15680433 GAAGATCAAA
* * * * *
15680443 GATGGCAGATTTTACCTCCCTGACTACAGAGGAGTACATAGAAGTCGATAACTCTATCTCCCTGT
1 GATGCCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGG
**
15680508 ATTTGGCAGTGGAATAGATTGAAGATTACAGATCTTGCCTTCCTGTATTTGGCAGAGAAGCAGAT
66 A--TAACAGTGGAATAGATTGAAGATTACAGATCTTGCCTTCCTGTATTTGGCAGAGAAGCAGAT
*
15680573 TGAT
129 CGAT
* *
15680577 GATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGT
1 GATGCCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGG
** *
15680642 ATTTGGCAGTGGAATAGATTGAAGATTACAGATCTTGCCTTCCTGTATTTGGCAGAGAAGTAGAT
66 A--TAACAGTGGAATAGATTGAAGATTACAGATCTTGCCTTCCTGTATTTGGCAGAGAAGCAGAT
15680707 CGAAT
129 CG-AT
*
15680712 -ATGCCAGATTTTACCTCCCTGAGATTACAGTGGAGTACATTGAAGCC-AGTAA-TCT-TACTTC
1 GATGCCAGATTTTACCTCCCT--GACTACAGTGGAGTACATTGAAGCCGA-TAACTCTAT-C-TC
*
15680773 CCTAGGA-AACAGTGGAATAGATCGAAGATTACAG
61 CCT-GGATAACAGTGGAATAGATTGAAGATTACAG
15680807 GCTTATCTCC
Statistics
Matches: 212, Mismatches: 11, Indels: 14
0.89 0.05 0.06
Matches are distributed among these distances:
134 171 0.81
135 7 0.03
136 32 0.15
137 2 0.01
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.29
Consensus pattern (132 bp):
GATGCCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGG
ATAACAGTGGAATAGATTGAAGATTACAGATCTTGCCTTCCTGTATTTGGCAGAGAAGCAGATCG
AT
Found at i:15680909 original size:40 final size:40
Alignment explanation
Indices: 15680808--15680919 Score: 138
Period size: 40 Copynumber: 2.8 Consensus size: 40
15680798 AGATTACAGG
* *
15680808 CTTATCTCCCTAAGCAGTAGCGGAGCAGACGAAACCACAAAT
1 CTTATCTCCCTAAGAAGTAGTGGAGCAGAC--AACCACAAAT
* *
15680850 CTTATCTCCCTAAGTAGTAGTGGAGCAGATC-A-CATCAAGT
1 CTTATCTCCCTAAGAAGTAGTGGAGCAGA-CAACCA-CAAAT
15680890 CTTATCTCCCTAAGAAGTAGTGGAGCAGAC
1 CTTATCTCCCTAAGAAGTAGTGGAGCAGAC
15680920 TAAAAACACA
Statistics
Matches: 64, Mismatches: 4, Indels: 7
0.85 0.05 0.09
Matches are distributed among these distances:
39 3 0.05
40 33 0.52
42 27 0.42
43 1 0.02
ACGTcount: A:0.32, C:0.25, G:0.21, T:0.22
Consensus pattern (40 bp):
CTTATCTCCCTAAGAAGTAGTGGAGCAGACAACCACAAAT
Found at i:15681686 original size:6 final size:6
Alignment explanation
Indices: 15681655--15681685 Score: 55
Period size: 6 Copynumber: 5.3 Consensus size: 6
15681645 CCGGTCTCTA
15681655 TTCATT TTCATT TTCATT TTCATT TT-ATT TT
1 TTCATT TTCATT TTCATT TTCATT TTCATT TT
15681686 TTTTATCTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
5 5 0.20
6 20 0.80
ACGTcount: A:0.16, C:0.13, G:0.00, T:0.71
Consensus pattern (6 bp):
TTCATT
Found at i:15682805 original size:15 final size:15
Alignment explanation
Indices: 15682785--15682818 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
15682775 TTTATTTTTG
* *
15682785 TTATTTTTGCTCGTA
1 TTATTTTTACTCGCA
15682800 TTATTTTTACTCGCA
1 TTATTTTTACTCGCA
15682815 TTAT
1 TTAT
15682819 CGTAATTGTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.18, C:0.15, G:0.09, T:0.59
Consensus pattern (15 bp):
TTATTTTTACTCGCA
Found at i:15701024 original size:15 final size:15
Alignment explanation
Indices: 15701000--15701033 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
15700990 AACAATTACG
* *
15701000 ATAATGCGAGTAAAA
1 ATAATACGAGCAAAA
15701015 ATAATACGAGCAAAA
1 ATAATACGAGCAAAA
15701030 ATAA
1 ATAA
15701034 CAAAAATAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.59, C:0.09, G:0.15, T:0.18
Consensus pattern (15 bp):
ATAATACGAGCAAAA
Found at i:15702155 original size:6 final size:6
Alignment explanation
Indices: 15702128--15702158 Score: 55
Period size: 6 Copynumber: 5.3 Consensus size: 6
15702118 AAAGATAAAA
15702128 AAAAT- AAAATG AAAATG AAAATG AAAATG AA
1 AAAATG AAAATG AAAATG AAAATG AAAATG AA
15702159 TAGAGACCGG
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
5 5 0.20
6 20 0.80
ACGTcount: A:0.71, C:0.00, G:0.13, T:0.16
Consensus pattern (6 bp):
AAAATG
Found at i:15702938 original size:40 final size:42
Alignment explanation
Indices: 15702891--15703002 Score: 149
Period size: 42 Copynumber: 2.7 Consensus size: 42
15702881 TGTGTTTTTA
*
15702891 GTCTGCTCCACTACTTCTTAGGGAGATAAGA-CT-TGATGT-
1 GTCTGCTCCACTACTACTTAGGGAGATAAGATCTGTGATGTC
* *
15702930 GATCTGCTCCACTACTACTTAGGGAGATAAGATCTGTGGTTTC
1 G-TCTGCTCCACTACTACTTAGGGAGATAAGATCTGTGATGTC
* *
15702973 GTCTGCTCCGCTACTGCTTAGGGAGATAAG
1 GTCTGCTCCACTACTACTTAGGGAGATAAG
15703003 CCTGTAATCT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
39 1 0.02
40 29 0.45
41 2 0.03
42 31 0.48
43 1 0.02
ACGTcount: A:0.22, C:0.21, G:0.25, T:0.31
Consensus pattern (42 bp):
GTCTGCTCCACTACTACTTAGGGAGATAAGATCTGTGATGTC
Found at i:15703163 original size:46 final size:46
Alignment explanation
Indices: 15703113--15703306 Score: 159
Period size: 46 Copynumber: 4.3 Consensus size: 46
15703103 ATCTACTTCT
15703113 CTGCCAAATACAGGAAGGCAAGATCTGTAATCTTCAATCTATTCCA
1 CTGCCAAATACAGGAAGGCAAGATCTGTAATCTTCAATCTATTCCA
* * *** * *
15703159 CTGCCAAATACAGGGA-G-ATAGAGT-TATCGGCTTCAATGTACTCCA
1 CTGCCAAATACAGGAAGGCA-AGA-TCTGTAATCTTCAATCTATTCCA
* * * * * ** * * *
15703204 CTG--TAGT-CAGGGAGGTAAAATCTGCCATCATCAATCTGCTT-CT
1 CTGCCAAATACAGGAAGGCAAGATCTGTAATCTTCAATCT-ATTCCA
15703247 CTGCCAAATACAGGAAGGCAAGATCTGTAATCTTCAATCTATTCCA
1 CTGCCAAATACAGGAAGGCAAGATCTGTAATCTTCAATCTATTCCA
15703293 CTGCCAAATACAGG
1 CTGCCAAATACAGG
15703307 GAGATAGAGT
Statistics
Matches: 109, Mismatches: 29, Indels: 20
0.69 0.18 0.13
Matches are distributed among these distances:
42 7 0.06
43 18 0.17
44 3 0.03
45 26 0.24
46 55 0.50
ACGTcount: A:0.32, C:0.24, G:0.19, T:0.26
Consensus pattern (46 bp):
CTGCCAAATACAGGAAGGCAAGATCTGTAATCTTCAATCTATTCCA
Found at i:15703250 original size:134 final size:135
Alignment explanation
Indices: 15703051--15703366 Score: 537
Period size: 134 Copynumber: 2.3 Consensus size: 135
15703041 TAAGATTGCT
* * * *
15703051 GGCTTCAATGTACTCTACTGTAATCTCAGGGAGGTAAAATCTGGCAT-ATTCGATCTACTTCTCT
1 GGCTTCAATGTACTCCACTGT-A-GTCAGGGAGGTAAAATCTGCCATCATTCAATCTACTTCTCT
15703115 GCCAAATACAGGAAGGCAAGATCTGTAATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAG
64 GCCAAATACAGGAAGGCAAGATCTGTAATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAG
15703180 AGTTATC
129 AGTTATC
*
15703187 GGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCA-TCAATCTGCTTCTCTGC
1 GGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCATTCAATCTACTTCTCTGC
15703251 CAAATACAGGAAGGCAAGATCTGTAATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAG
66 CAAATACAGGAAGGCAAGATCTGTAATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAG
15703316 TTATC
131 TTATC
* *
15703321 GGCTTCTATGTACTCCTCTGTAGTCAGGGAGGTAAAATCTGCCATC
1 GGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATC
15703367 TTTGATCTTC
Statistics
Matches: 172, Mismatches: 7, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
134 150 0.87
135 2 0.01
136 20 0.12
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.28
Consensus pattern (135 bp):
GGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCATTCAATCTACTTCTCTGC
CAAATACAGGAAGGCAAGATCTGTAATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAG
TTATC
Found at i:15703493 original size:97 final size:95
Alignment explanation
Indices: 15703276--15703566 Score: 501
Period size: 95 Copynumber: 3.0 Consensus size: 95
15703266 AAGATCTGTA
* *
15703276 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCTATGTACTCCTCTG
1 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
15703341 TAGTCAGGGAGGTAAAATCTGCCATCTTTG
66 TAGTCAGGGAGGTAAAATCTGCCATCTTTG
* * *
15703371 ATCTTCAATCTATTCCACTGCCAAATACTGGGAGATAGAGTTATCGGCTTCAATATACTCCACTA
1 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
*
15703436 TAGTCACAAGGAGGTAAAATCTGCCATCTTTG
66 TAGT--CAGGGAGGTAAAATCTGCCATCTTTG
*
15703468 ATCTTCAATCTATTCCACTGCCAAATGCAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
1 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
15703533 TAGTCAGGGAGGTAAAATCTGCCATCTTTG
66 TAGTCAGGGAGGTAAAATCTGCCATCTTTG
15703563 ATCT
1 ATCT
15703567 GCTTCGCTGC
Statistics
Matches: 183, Mismatches: 11, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
95 93 0.51
97 90 0.49
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.31
Consensus pattern (95 bp):
ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
TAGTCAGGGAGGTAAAATCTGCCATCTTTG
Found at i:15703703 original size:86 final size:87
Alignment explanation
Indices: 15703557--15703737 Score: 274
Period size: 86 Copynumber: 2.1 Consensus size: 87
15703547 AAATCTGCCA
* *
15703557 TCTTTGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATATTCAACCTGCTCTACTA
1 TCTTTGATCTGCTTCACTGCCAAATACAGGAAGGCAAGATCTGCAATATTCAACCAGCTCTACTA
*
15703622 CAAACGAGAGAGGCAAGGTTTG
66 CAAAAGAGAGAGGCAAGGTTTG
* * * * * *
15703644 TCTTTGATCTGCTTCACTGTC-AATGCAGGAAGGCAAGATTTGCTATCTTCAACCAGCTCTGCTA
1 TCTTTGATCTGCTTCACTGCCAAATACAGGAAGGCAAGATCTGCAATATTCAACCAGCTCTACTA
15703708 CAAAAGAGAGAGGCAAGGTTTG
66 CAAAAGAGAGAGGCAAGGTTTG
15703730 TCTTTGAT
1 TCTTTGAT
15703738 TTTTACTGAT
Statistics
Matches: 85, Mismatches: 9, Indels: 1
0.89 0.09 0.01
Matches are distributed among these distances:
86 66 0.78
87 19 0.22
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Consensus pattern (87 bp):
TCTTTGATCTGCTTCACTGCCAAATACAGGAAGGCAAGATCTGCAATATTCAACCAGCTCTACTA
CAAAAGAGAGAGGCAAGGTTTG
Found at i:15705001 original size:24 final size:23
Alignment explanation
Indices: 15704965--15705012 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
15704955 GCCTCTCCTT
*
15704965 TTTTCACTCATTTTTCTTTTCTTC
1 TTTTCACT-AATTTTCTTTTCTTC
* *
15704989 TTTTCATTAATTTTCTTTTTTTC
1 TTTTCACTAATTTTCTTTTCTTC
15705012 T
1 T
15705013 AAGTGAAGTA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
23 14 0.67
24 7 0.33
ACGTcount: A:0.10, C:0.19, G:0.00, T:0.71
Consensus pattern (23 bp):
TTTTCACTAATTTTCTTTTCTTC
Found at i:15710368 original size:15 final size:15
Alignment explanation
Indices: 15710344--15710377 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
15710334 AACAATTACG
* *
15710344 ATAATGCGAGTAAAA
1 ATAATACGAGCAAAA
15710359 ATAATACGAGCAAAA
1 ATAATACGAGCAAAA
15710374 ATAA
1 ATAA
15710378 CAAAAATAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.59, C:0.09, G:0.15, T:0.18
Consensus pattern (15 bp):
ATAATACGAGCAAAA
Found at i:15711504 original size:6 final size:6
Alignment explanation
Indices: 15711477--15711507 Score: 55
Period size: 6 Copynumber: 5.3 Consensus size: 6
15711467 AAAGATAAAA
15711477 AAAAT- AAAATG AAAATG AAAATG AAAATG AA
1 AAAATG AAAATG AAAATG AAAATG AAAATG AA
15711508 TAGAGACCGG
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
5 5 0.20
6 20 0.80
ACGTcount: A:0.71, C:0.00, G:0.13, T:0.16
Consensus pattern (6 bp):
AAAATG
Found at i:15712290 original size:40 final size:41
Alignment explanation
Indices: 15712243--15712354 Score: 140
Period size: 40 Copynumber: 2.7 Consensus size: 41
15712233 TGTGTTTTTA
*
15712243 GTCTGCTCCACTACTTCTTAGGGAGATAAGACTTGAT-G-T-
1 GTCTGCTCCACTACTACTTAGGGAGATAAGACTTG-TGGTTC
*
15712282 GATCTGCTCCACTACTACTTAGGGAGATAAGATTTGTGGTTTC
1 G-TCTGCTCCACTACTACTTAGGGAGATAAGACTTGTGG-TTC
* *
15712325 GTCTGCTCCGCTACTGCTTAGGGAGATAAG
1 GTCTGCTCCACTACTACTTAGGGAGATAAG
15712355 CCTGTAATCT
Statistics
Matches: 64, Mismatches: 4, Indels: 7
0.85 0.05 0.09
Matches are distributed among these distances:
39 2 0.03
40 33 0.52
42 28 0.44
43 1 0.02
ACGTcount: A:0.22, C:0.21, G:0.25, T:0.32
Consensus pattern (41 bp):
GTCTGCTCCACTACTACTTAGGGAGATAAGACTTGTGGTTC
Found at i:15712516 original size:46 final size:46
Alignment explanation
Indices: 15712466--15712659 Score: 159
Period size: 46 Copynumber: 4.3 Consensus size: 46
15712456 ATCTACTTCT
15712466 CTGCCAAATACAGGAAGGCAAGATCTGTAATCTTCAATCTATTCCA
1 CTGCCAAATACAGGAAGGCAAGATCTGTAATCTTCAATCTATTCCA
* * *** * *
15712512 CTGCCAAATACAGGGA-G-ATAGAGT-TATCGGCTTCAATGTACTCCA
1 CTGCCAAATACAGGAAGGCA-AGA-TCTGTAATCTTCAATCTATTCCA
* * * * * ** * * *
15712557 CTG--TAGT-CAGGGAGGTAAAATCTGCCATCATCAATCTGCTT-CT
1 CTGCCAAATACAGGAAGGCAAGATCTGTAATCTTCAATCT-ATTCCA
15712600 CTGCCAAATACAGGAAGGCAAGATCTGTAATCTTCAATCTATTCCA
1 CTGCCAAATACAGGAAGGCAAGATCTGTAATCTTCAATCTATTCCA
15712646 CTGCCAAATACAGG
1 CTGCCAAATACAGG
15712660 GAGATAGAGT
Statistics
Matches: 109, Mismatches: 29, Indels: 20
0.69 0.18 0.13
Matches are distributed among these distances:
42 7 0.06
43 18 0.17
44 3 0.03
45 26 0.24
46 55 0.50
ACGTcount: A:0.32, C:0.24, G:0.19, T:0.26
Consensus pattern (46 bp):
CTGCCAAATACAGGAAGGCAAGATCTGTAATCTTCAATCTATTCCA
Found at i:15712599 original size:134 final size:135
Alignment explanation
Indices: 15712404--15712719 Score: 537
Period size: 134 Copynumber: 2.3 Consensus size: 135
15712394 TAAGATTACT
* * *
15712404 GGCTTCAATGTACTCCACTGTAATCTCAGGGAGGTAAAATCTGGCAT-ATTCGATCTACTTCTCT
1 GGCTTCAATGTACTCCACTGT-A-GTCAGGGAGGTAAAATCTGCCATCATTCAATCTACTTCTCT
15712468 GCCAAATACAGGAAGGCAAGATCTGTAATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAG
64 GCCAAATACAGGAAGGCAAGATCTGTAATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAG
15712533 AGTTATC
129 AGTTATC
*
15712540 GGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCA-TCAATCTGCTTCTCTGC
1 GGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCATTCAATCTACTTCTCTGC
15712604 CAAATACAGGAAGGCAAGATCTGTAATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAG
66 CAAATACAGGAAGGCAAGATCTGTAATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAG
15712669 TTATC
131 TTATC
* * *
15712674 GACTTCTATGTACTCCTCTGTAGTCAGGGAGGTAAAATCTGCCATC
1 GGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATC
15712720 TTTGATCTTC
Statistics
Matches: 172, Mismatches: 7, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
134 149 0.87
135 2 0.01
136 21 0.12
ACGTcount: A:0.30, C:0.23, G:0.20, T:0.28
Consensus pattern (135 bp):
GGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCATTCAATCTACTTCTCTGC
CAAATACAGGAAGGCAAGATCTGTAATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAG
TTATC
Found at i:15712846 original size:97 final size:95
Alignment explanation
Indices: 15712629--15712919 Score: 492
Period size: 95 Copynumber: 3.0 Consensus size: 95
15712619 AAGATCTGTA
* * *
15712629 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGACTTCTATGTACTCCTCTG
1 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
15712694 TAGTCAGGGAGGTAAAATCTGCCATCTTTG
66 TAGTCAGGGAGGTAAAATCTGCCATCTTTG
* * *
15712724 ATCTTCAATCTATTCCACTGCCAAATACTGGGAGATAGAGTTATCGGCTTCAATATACTCCACTA
1 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
*
15712789 TAGTCACAAGGAGGTAAAATCTGCCATCTTTG
66 TAGT--CAGGGAGGTAAAATCTGCCATCTTTG
*
15712821 ATCTTCAATCTATTCCACTGCCAAATGCAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
1 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
15712886 TAGTCAGGGAGGTAAAATCTGCCATCTTTG
66 TAGTCAGGGAGGTAAAATCTGCCATCTTTG
15712916 ATCT
1 ATCT
15712920 GCTTCGCTGC
Statistics
Matches: 182, Mismatches: 12, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
95 92 0.51
97 90 0.49
ACGTcount: A:0.29, C:0.22, G:0.19, T:0.31
Consensus pattern (95 bp):
ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
TAGTCAGGGAGGTAAAATCTGCCATCTTTG
Found at i:15713035 original size:86 final size:87
Alignment explanation
Indices: 15712910--15713086 Score: 284
Period size: 86 Copynumber: 2.0 Consensus size: 87
15712900 AAATCTGCCA
* *
15712910 TCTTTGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATATTCAACCTGCTCTGCTA
1 TCTTCGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATATTCAACCAGCTCTGCTA
15712975 CAAACGAGAGAGGCAAGGTTTG
66 CAAACGAGAGAGGCAAGGTTTG
* * * * *
15712997 TCTTCGATCTGCTTCGCTGTC-AATGCAGGAAGGCAAGATTTGCTATCTTCAACCAGCTCTGCTA
1 TCTTCGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATATTCAACCAGCTCTGCTA
15713061 CAAACGAGAGAGGCAAGGTTTG
66 CAAACGAGAGAGGCAAGGTTTG
15713083 TCTT
1 TCTT
15713087 TGATTTTTAC
Statistics
Matches: 83, Mismatches: 7, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
86 64 0.77
87 19 0.23
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (87 bp):
TCTTCGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATCTGCAATATTCAACCAGCTCTGCTA
CAAACGAGAGAGGCAAGGTTTG
Found at i:15713077 original size:44 final size:43
Alignment explanation
Indices: 15712941--15713082 Score: 114
Period size: 44 Copynumber: 3.3 Consensus size: 43
15712931 AAATACAGGA
* *
15712941 AGGCAAGATCTGCAATATTCAACCTGCTCTGCTACAAACGAGAG
1 AGGCAAGATTTGC-ATCTTCAACCTGCTCTGCTACAAACGAGAG
* * * * *
15712985 AGGCAAGGTTTG--TCTTCGATCTGCT-TCGCTGTC-AATGCAG-G
1 AGGCAAGATTTGCATCTTCAACCTGCTCT-GCT-ACAAACG-AGAG
*
15713026 AAGGCAAGATTTGCTATCTTCAACCAGCTCTGCTACAAACGAGAG
1 -AGGCAAGATTTGC-ATCTTCAACCTGCTCTGCTACAAACGAGAG
*
15713071 AGGCAAGGTTTG
1 AGGCAAGATTTG
15713083 TCTTTGATTT
Statistics
Matches: 74, Mismatches: 14, Indels: 20
0.69 0.13 0.19
Matches are distributed among these distances:
40 1 0.01
41 17 0.23
42 14 0.19
44 24 0.32
45 17 0.23
46 1 0.01
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.25
Consensus pattern (43 bp):
AGGCAAGATTTGCATCTTCAACCTGCTCTGCTACAAACGAGAG
Found at i:15714354 original size:24 final size:23
Alignment explanation
Indices: 15714318--15714365 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
15714308 GCCTCTCCTT
*
15714318 TTTTCACTCATTTTTCTTTTCTTC
1 TTTTCACT-AATTTTCTTTTCTTC
* *
15714342 TTTTCATTAATTTTCTTTTTTTC
1 TTTTCACTAATTTTCTTTTCTTC
15714365 T
1 T
15714366 AAGTGAAGTA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
23 14 0.67
24 7 0.33
ACGTcount: A:0.10, C:0.19, G:0.00, T:0.71
Consensus pattern (23 bp):
TTTTCACTAATTTTCTTTTCTTC
Found at i:15729263 original size:24 final size:24
Alignment explanation
Indices: 15729236--15729333 Score: 151
Period size: 24 Copynumber: 4.0 Consensus size: 24
15729226 AAGGCTATCA
*
15729236 GGAGAAGATTTAGGAGCTAATAAG
1 GGAGAAGATTTAGGAGCTGATAAG
*
15729260 GGAGAGGATTTAGGAGCTGATAAG
1 GGAGAAGATTTAGGAGCTGATAAG
* *
15729284 GGAGAGGATTTAGGAGCTGATAAA
1 GGAGAAGATTTAGGAGCTGATAAG
15729308 GGAGAAGATTTAGGAGCTGATCAAG
1 GGAGAAGATTTAGGAGCTGAT-AAG
15729333 G
1 G
15729334 AGCAGGAGTT
Statistics
Matches: 68, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
24 65 0.96
25 3 0.04
ACGTcount: A:0.37, C:0.05, G:0.38, T:0.20
Consensus pattern (24 bp):
GGAGAAGATTTAGGAGCTGATAAG
Found at i:15731072 original size:46 final size:46
Alignment explanation
Indices: 15731019--15731188 Score: 163
Period size: 46 Copynumber: 3.7 Consensus size: 46
15731009 TTGAGCATCT
*
15731019 GAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAATGTCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCC
* * *
15731065 GAACTCGTTGAGTTGAGTCCGAG-T---TTGTGAAATG-TAACTAGGCATCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATG-GATGCGAA-T--G--TCC
* * *
15731112 GAACTCATTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACG-CC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCC
*
15731157 TGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 -GAACTCGTTGAGTTGAGTCCGAGTTCACTTA
15731189 GGGGCGGGTT
Statistics
Matches: 99, Mismatches: 13, Indels: 24
0.73 0.10 0.18
Matches are distributed among these distances:
42 6 0.06
43 4 0.04
45 4 0.04
46 50 0.51
47 24 0.24
48 2 0.02
50 3 0.03
51 6 0.06
ACGTcount: A:0.23, C:0.18, G:0.28, T:0.31
Consensus pattern (46 bp):
GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCC
Found at i:15731172 original size:93 final size:93
Alignment explanation
Indices: 15731013--15731182 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
15731003 GGATGGTTGA
* * *
15731013 GCATCTGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCATTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
15731078 TGAGTCCGAGTTTGTGAAATGTAACTAG
66 TGAGTCCGAGTTTGTGAAATGTAACTAG
*
15731106 GCATCCGAACTCATTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACG-CCTGAGCTCGTTGAG
1 GCATCCGAACTCATTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGTCC-GAACTCGTTGAG
15731170 TTGAGTCCGAGTT
65 TTGAGTCCGAGTT
15731183 CACTTAGGGG
Statistics
Matches: 72, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
92 2 0.03
93 70 0.97
ACGTcount: A:0.22, C:0.18, G:0.28, T:0.31
Consensus pattern (93 bp):
GCATCCGAACTCATTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
TGAGTCCGAGTTTGTGAAATGTAACTAG
Found at i:15735644 original size:24 final size:24
Alignment explanation
Indices: 15735599--15735644 Score: 58
Period size: 25 Copynumber: 1.9 Consensus size: 24
15735589 TATATACCGA
*
15735599 TCACAAAAGTCTTAAATATTGATG
1 TCACAAAAGACTTAAATATTGATG
*
15735623 TCACAAAAAGACTTGAAT-TTGA
1 TCAC-AAAAGACTTAAATATTGA
15735645 GACAGCGAAG
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
24 8 0.42
25 11 0.58
ACGTcount: A:0.43, C:0.13, G:0.13, T:0.30
Consensus pattern (24 bp):
TCACAAAAGACTTAAATATTGATG
Found at i:15749046 original size:44 final size:44
Alignment explanation
Indices: 15748988--15749511 Score: 515
Period size: 44 Copynumber: 11.9 Consensus size: 44
15748978 CGGTCTGCTT
* *
15748988 TCTTCGATCTACTTCACCACCAGTATGGGAAGACAAGATCTGCA
1 TCTTCGATCTACTTCACCACCAATATAGGAAGACAAGATCTGCA
* * * * *
15749032 TCTTCGATCCACTTC-CTACCAATATAGGAAGATAGGATCTGATA
1 TCTTCGATCTACTTCACCACCAATATAGGAAGACAAGATCTG-CA
* * * *
15749076 TCTTCGATCTACTTCA-CGCCAATACACGAAGACAAGATCTGCTT
1 TCTTCGATCTACTTCACCACCAATATAGGAAGACAAGATCTGC-A
* *
15749120 TCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCA
1 TCTTCGATCTACTTCACCACCAATATAGGAAGACAAGATCTGCA
* * * * *
15749164 TCTTCGATCCACTTC-CTACCAATATAGGAAGATAGGATCTGATA
1 TCTTCGATCTACTTCACCACCAATATAGGAAGACAAGATCTG-CA
* * * *
15749208 TCTTCGATCTACTTCA-CGCCAATACATGAAGACAAGATCTGCTT
1 TCTTCGATCTACTTCACCACCAATATAGGAAGACAAGATCTGC-A
* * *
15749252 TCTTCGATCTACTTCGCCACAAATATGGGAAGACAAGATCTGCA
1 TCTTCGATCTACTTCACCACCAATATAGGAAGACAAGATCTGCA
* * * * *
15749296 TCTTCGATCCACTTC-CTACCAATATAGGAAGATAGGATCTGATA
1 TCTTCGATCTACTTCACCACCAATATAGGAAGACAAGATCTG-CA
* * * **
15749340 TCTTCGATCTACTTCA-CGCCAATACATGAAGACAAGATCTGTTT
1 TCTTCGATCTACTTCACCACCAATATAGGAAGACAAGATCTG-CA
* * *
15749384 TCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCA
1 TCTTCGATCTACTTCACCACCAATATAGGAAGACAAGATCTGCA
* * * * *
15749428 TCTTCGATCCACTTC-CTACCAATATAGGAAGATAGGATCTGATA
1 TCTTCGATCTACTTCACCACCAATATAGGAAGACAAGATCTG-CA
* * *
15749472 TCTTCGATCTACTTCA-CGCCAATACATGAAGACAAGATCT
1 TCTTCGATCTACTTCACCACCAATATAGGAAGACAAGATCT
15749512 ACTTTAATGA
Statistics
Matches: 385, Mismatches: 82, Indels: 26
0.78 0.17 0.05
Matches are distributed among these distances:
43 86 0.22
44 235 0.61
45 64 0.17
ACGTcount: A:0.31, C:0.26, G:0.16, T:0.28
Consensus pattern (44 bp):
TCTTCGATCTACTTCACCACCAATATAGGAAGACAAGATCTGCA
Found at i:15749218 original size:132 final size:132
Alignment explanation
Indices: 15748981--15749516 Score: 1009
Period size: 132 Copynumber: 4.1 Consensus size: 132
15748971 CCATCGTCGG
* *
15748981 TCTGCTTTCTTCGATCTACTTCACCACCAGTATGGGAAGACAAGATCTGCATCTTCGATCCACTT
1 TCTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTT
*
15749046 CCTACCAATATAGGAAGATAGGATCTGATATCTTCGATCTACTTCACGCCAATACACGAAGACAA
66 CCTACCAATATAGGAAGATAGGATCTGATATCTTCGATCTACTTCACGCCAATACATGAAGACAA
15749111 GA
131 GA
15749113 TCTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTT
1 TCTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTT
15749178 CCTACCAATATAGGAAGATAGGATCTGATATCTTCGATCTACTTCACGCCAATACATGAAGACAA
66 CCTACCAATATAGGAAGATAGGATCTGATATCTTCGATCTACTTCACGCCAATACATGAAGACAA
15749243 GA
131 GA
*
15749245 TCTGCTTTCTTCGATCTACTTCGCCACAAATATGGGAAGACAAGATCTGCATCTTCGATCCACTT
1 TCTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTT
15749310 CCTACCAATATAGGAAGATAGGATCTGATATCTTCGATCTACTTCACGCCAATACATGAAGACAA
66 CCTACCAATATAGGAAGATAGGATCTGATATCTTCGATCTACTTCACGCCAATACATGAAGACAA
15749375 GA
131 GA
* *
15749377 TCTGTTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTT
1 TCTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTT
15749442 CCTACCAATATAGGAAGATAGGATCTGATATCTTCGATCTACTTCACGCCAATACATGAAGACAA
66 CCTACCAATATAGGAAGATAGGATCTGATATCTTCGATCTACTTCACGCCAATACATGAAGACAA
15749507 GA
131 GA
*
15749509 TCTACTTT
1 TCTGCTTT
15749517 AATGACTTCA
Statistics
Matches: 395, Mismatches: 9, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
132 395 1.00
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.28
Consensus pattern (132 bp):
TCTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTT
CCTACCAATATAGGAAGATAGGATCTGATATCTTCGATCTACTTCACGCCAATACATGAAGACAA
GA
Found at i:15763639 original size:23 final size:23
Alignment explanation
Indices: 15763613--15763657 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
15763603 ACCCAAGCCC
15763613 ATTTTA-ATATTTAATATTTAATA
1 ATTTTATATATTT-ATATTTAATA
*
15763636 ATTTTATATATTTTTATTTAAT
1 ATTTTATATATTTATATTTAAT
15763658 GAAATGATAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 14 0.70
24 6 0.30
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (23 bp):
ATTTTATATATTTATATTTAATA
Found at i:15767561 original size:20 final size:19
Alignment explanation
Indices: 15767533--15767597 Score: 60
Period size: 20 Copynumber: 3.3 Consensus size: 19
15767523 ATGTTTAGAG
*
15767533 TTTTGAGTTTTTTTTATAT
1 TTTTTAGTTTTTTTTATAT
15767552 TTTTTAAGTTTTTTTAATATAT
1 TTTTT-AGTTTTTTT--TATAT
* *
15767574 TATCTAG-TTTTTTTATGAT
1 TTTTTAGTTTTTTTTAT-AT
15767593 TTTTT
1 TTTTT
15767598 GAGATGTAAA
Statistics
Matches: 37, Mismatches: 5, Indels: 8
0.74 0.10 0.16
Matches are distributed among these distances:
18 3 0.08
19 9 0.24
20 15 0.41
21 2 0.05
22 8 0.22
ACGTcount: A:0.20, C:0.02, G:0.08, T:0.71
Consensus pattern (19 bp):
TTTTTAGTTTTTTTTATAT
Found at i:15773439 original size:7 final size:7
Alignment explanation
Indices: 15773427--15773452 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
15773417 GGTATTTTGG
15773427 GAAAAAA
1 GAAAAAA
15773434 GAAAAAA
1 GAAAAAA
15773441 GAAAAAA
1 GAAAAAA
15773448 GAAAA
1 GAAAA
15773453 TATTTTAATG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (7 bp):
GAAAAAA
Found at i:15776428 original size:54 final size:54
Alignment explanation
Indices: 15776349--15776459 Score: 222
Period size: 54 Copynumber: 2.1 Consensus size: 54
15776339 ACACTAAAGA
15776349 AAGAATATTTTTCACGGTTGGAATAAGTGATTAATCTTTTTTCTATTCCAAACT
1 AAGAATATTTTTCACGGTTGGAATAAGTGATTAATCTTTTTTCTATTCCAAACT
15776403 AAGAATATTTTTCACGGTTGGAATAAGTGATTAATCTTTTTTCTATTCCAAACT
1 AAGAATATTTTTCACGGTTGGAATAAGTGATTAATCTTTTTTCTATTCCAAACT
15776457 AAG
1 AAG
15776460 TCTATATATA
Statistics
Matches: 57, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
54 57 1.00
ACGTcount: A:0.32, C:0.13, G:0.14, T:0.41
Consensus pattern (54 bp):
AAGAATATTTTTCACGGTTGGAATAAGTGATTAATCTTTTTTCTATTCCAAACT
Found at i:15776460 original size:30 final size:30
Alignment explanation
Indices: 15776372--15776460 Score: 73
Period size: 26 Copynumber: 3.2 Consensus size: 30
15776362 ACGGTTGGAA
15776372 TAAGTGATTAATCTTTTTTCTATTCCAAAC
1 TAAGTGATTAATCTTTTTTCTATTCCAAAC
* ** ** **
15776402 TAA--GAAT-AT-TTTTCACGGTT-GGAA-
1 TAAGTGATTAATCTTTTTTCTATTCCAAAC
15776426 TAAGTGATTAATCTTTTTTCTATTCCAAAC
1 TAAGTGATTAATCTTTTTTCTATTCCAAAC
15776456 TAAGT
1 TAAGT
15776461 CTATATATAA
Statistics
Matches: 39, Mismatches: 14, Indels: 12
0.60 0.22 0.18
Matches are distributed among these distances:
24 3 0.08
25 2 0.05
26 10 0.26
27 4 0.10
28 10 0.26
29 2 0.05
30 8 0.21
ACGTcount: A:0.31, C:0.13, G:0.11, T:0.44
Consensus pattern (30 bp):
TAAGTGATTAATCTTTTTTCTATTCCAAAC
Found at i:15781075 original size:30 final size:29
Alignment explanation
Indices: 15781039--15781115 Score: 84
Period size: 29 Copynumber: 2.6 Consensus size: 29
15781029 TAGTTACGGA
*
15781039 TGACTGATTTATTATTTTTCTAAAGTTTAG
1 TGACTGATTTATTATTTTTC-AAAATTTAG
* * *
15781069 TGACTGAGTTATAACTTTTCAAAATTTAG
1 TGACTGATTTATTATTTTTCAAAATTTAG
*
15781098 TAACT-ATTTTATTATTTT
1 TGACTGA-TTTATTATTTT
15781116 AATTAAATTT
Statistics
Matches: 38, Mismatches: 8, Indels: 3
0.78 0.16 0.06
Matches are distributed among these distances:
28 1 0.03
29 20 0.53
30 17 0.45
ACGTcount: A:0.30, C:0.08, G:0.10, T:0.52
Consensus pattern (29 bp):
TGACTGATTTATTATTTTTCAAAATTTAG
Found at i:15782489 original size:15 final size:15
Alignment explanation
Indices: 15782469--15782520 Score: 50
Period size: 15 Copynumber: 3.2 Consensus size: 15
15782459 ACTACAAAAC
15782469 ATTTATTATTAATAT
1 ATTTATTATTAATAT
*
15782484 ATTTATAATTGTAATAAAT
1 ATTTATTA-T-TAAT--AT
*
15782503 ATTTATTATTAAAAT
1 ATTTATTATTAATAT
15782518 ATT
1 ATT
15782521 AATATTGAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 8
0.73 0.07 0.20
Matches are distributed among these distances:
15 12 0.40
16 1 0.03
17 7 0.23
18 1 0.03
19 9 0.30
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (15 bp):
ATTTATTATTAATAT
Found at i:15782598 original size:18 final size:18
Alignment explanation
Indices: 15782560--15782595 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
15782550 TAATATTATT
*
15782560 TAAAATTAATTATTAAAA
1 TAAAATTAAATATTAAAA
15782578 TAAAATTAAAATATTAAA
1 TAAAATT-AAATATTAAA
15782596 TAATTTATGA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 7 0.44
19 9 0.56
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (18 bp):
TAAAATTAAATATTAAAA
Found at i:15783862 original size:21 final size:21
Alignment explanation
Indices: 15783813--15783871 Score: 59
Period size: 21 Copynumber: 2.8 Consensus size: 21
15783803 ATAATAAATT
*
15783813 AAAT-ATATTTAAAA-ACATAA
1 AAATAATA-TTAAAACAAATAA
*
15783833 AAACAAATATTAAAACAAATAA
1 AAA-TAATATTAAAACAAATAA
*
15783855 AAATAATACTAAAACAA
1 AAATAATATTAAAACAA
15783872 TTCTTAAAAC
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
20 3 0.09
21 18 0.56
22 11 0.34
ACGTcount: A:0.69, C:0.08, G:0.00, T:0.22
Consensus pattern (21 bp):
AAATAATATTAAAACAAATAA
Found at i:15783948 original size:15 final size:16
Alignment explanation
Indices: 15783918--15783950 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
15783908 AAATGGTTAT
15783918 ATTAAAAATTTAAAATA
1 ATTAAAAA-TTAAAATA
15783935 ATTAAAAA-TAAAATA
1 ATTAAAAATTAAAATA
15783950 A
1 A
15783951 ATATATATAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 8 0.50
17 8 0.50
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (16 bp):
ATTAAAAATTAAAATA
Found at i:15787328 original size:20 final size:20
Alignment explanation
Indices: 15787299--15787368 Score: 72
Period size: 20 Copynumber: 3.5 Consensus size: 20
15787289 TTGCACCTCG
*
15787299 GTGCCTCTGATAGTACATTA
1 GTGCCCCTGATAGTACATTA
*
15787319 GTGCCCCTGA-A-TACACTTTG
1 GTGCCCCTGATAGTACA--TTA
* *
15787339 GTGCCCCTGATAGCACATTT
1 GTGCCCCTGATAGTACATTA
15787359 GTGCCCCTGA
1 GTGCCCCTGA
15787369 CTGCGCTTCG
Statistics
Matches: 42, Mismatches: 4, Indels: 8
0.78 0.07 0.15
Matches are distributed among these distances:
18 4 0.10
19 1 0.02
20 33 0.79
21 1 0.02
22 3 0.07
ACGTcount: A:0.20, C:0.29, G:0.21, T:0.30
Consensus pattern (20 bp):
GTGCCCCTGATAGTACATTA
Found at i:15787384 original size:40 final size:40
Alignment explanation
Indices: 15787296--15787386 Score: 110
Period size: 40 Copynumber: 2.3 Consensus size: 40
15787286 TCATTGCACC
* *
15787296 TCGGTGCCTCTGATAGTACATTAGTGCCCCTGAATACACT
1 TCGGTGCCCCTGATAGCACATTAGTGCCCCTGAATACACT
* * * * *
15787336 TTGGTGCCCCTGATAGCACATTTGTGCCCCTGACTGCGCT
1 TCGGTGCCCCTGATAGCACATTAGTGCCCCTGAATACACT
*
15787376 TCGTTGCCCCT
1 TCGGTGCCCCT
15787387 ATTTTGCATC
Statistics
Matches: 42, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
40 42 1.00
ACGTcount: A:0.15, C:0.32, G:0.22, T:0.31
Consensus pattern (40 bp):
TCGGTGCCCCTGATAGCACATTAGTGCCCCTGAATACACT
Found at i:15788280 original size:21 final size:21
Alignment explanation
Indices: 15788223--15788272 Score: 91
Period size: 21 Copynumber: 2.4 Consensus size: 21
15788213 CCTACAACAT
15788223 GGCCATGTGTCCCTATGACAC
1 GGCCATGTGTCCCTATGACAC
*
15788244 GGCCATATGTCCCTATGACAC
1 GGCCATGTGTCCCTATGACAC
15788265 GGCCATGT
1 GGCCATGT
15788273 ACCCCTATTT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.20, C:0.32, G:0.24, T:0.24
Consensus pattern (21 bp):
GGCCATGTGTCCCTATGACAC
Found at i:15789405 original size:12 final size:12
Alignment explanation
Indices: 15789388--15789420 Score: 52
Period size: 11 Copynumber: 2.9 Consensus size: 12
15789378 CGGCCCGCCC
15789388 ATATTAATTTTT
1 ATATTAATTTTT
15789400 ATATT-ATTTTT
1 ATATTAATTTTT
15789411 ATA-TAATTTT
1 ATATTAATTTT
15789421 AAAAATATAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
10 1 0.05
11 14 0.70
12 5 0.25
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (12 bp):
ATATTAATTTTT
Found at i:15789442 original size:18 final size:18
Alignment explanation
Indices: 15789421--15789460 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
15789411 ATATAATTTT
*
15789421 AAAAATA-TATAATACATC
1 AAAAATACTA-AAAACATC
15789439 AAAAATACTAAAAACATC
1 AAAAATACTAAAAACATC
15789457 AAAA
1 AAAA
15789461 TAAATATTTC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 18 0.90
19 2 0.10
ACGTcount: A:0.68, C:0.12, G:0.00, T:0.20
Consensus pattern (18 bp):
AAAAATACTAAAAACATC
Found at i:15793684 original size:38 final size:37
Alignment explanation
Indices: 15793618--15793710 Score: 87
Period size: 38 Copynumber: 2.5 Consensus size: 37
15793608 ATTATAGTTG
* ** * * *
15793618 TTATGAGCAAAGTTACGTGTTATCGGATATAATAGCTC
1 TTATGAGCAAACTGGCGTATTATCGGATAGAA-AACTC
*
15793656 TTATGAGCAAACTGGCGTATTATTGGATAGAAAACTC
1 TTATGAGCAAACTGGCGTATTATCGGATAGAAAACTC
** *
15793693 TTACAAGCAAGCTGGCGT
1 TTATGAGCAAACTGGCGT
15793711 GCTTTGGTTG
Statistics
Matches: 45, Mismatches: 10, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
37 19 0.42
38 26 0.58
ACGTcount: A:0.32, C:0.15, G:0.23, T:0.30
Consensus pattern (37 bp):
TTATGAGCAAACTGGCGTATTATCGGATAGAAAACTC
Found at i:15798197 original size:5 final size:5
Alignment explanation
Indices: 15798187--15798222 Score: 63
Period size: 5 Copynumber: 7.0 Consensus size: 5
15798177 CTTGTACGGT
15798187 TAAAA TAAAA TAAAA TAAAA TAAAAA TAAAA TAAAA
1 TAAAA TAAAA TAAAA TAAAA T-AAAA TAAAA TAAAA
15798223 AACAATCGTA
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
5 25 0.83
6 5 0.17
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
TAAAA
Found at i:15798214 original size:11 final size:11
Alignment explanation
Indices: 15798188--15798223 Score: 65
Period size: 11 Copynumber: 3.4 Consensus size: 11
15798178 TTGTACGGTT
15798188 AAAATAAAAT-
1 AAAATAAAATA
15798198 AAAATAAAATA
1 AAAATAAAATA
15798209 AAAATAAAATA
1 AAAATAAAATA
15798220 AAAA
1 AAAA
15798224 ACAATCGTAG
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
10 10 0.40
11 15 0.60
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (11 bp):
AAAATAAAATA
Found at i:15807050 original size:15 final size:15
Alignment explanation
Indices: 15807030--15807060 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
15807020 AAAGCAATAA
15807030 AAATAAAAAGTTAAT
1 AAATAAAAAGTTAAT
15807045 AAATAAAAAGTTAAT
1 AAATAAAAAGTTAAT
15807060 A
1 A
15807061 CTATCAGTCT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.68, C:0.00, G:0.06, T:0.26
Consensus pattern (15 bp):
AAATAAAAAGTTAAT
Found at i:15808224 original size:22 final size:22
Alignment explanation
Indices: 15808193--15808243 Score: 75
Period size: 22 Copynumber: 2.3 Consensus size: 22
15808183 TTTGTGTTGG
*
15808193 ATATTGTAGGAATATTCTGTAA
1 ATATTTTAGGAATATTCTGTAA
* *
15808215 ATATTTTAGGAATATTTTGTAG
1 ATATTTTAGGAATATTCTGTAA
15808237 ATATTTT
1 ATATTTT
15808244 CTTTATTAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.33, C:0.02, G:0.16, T:0.49
Consensus pattern (22 bp):
ATATTTTAGGAATATTCTGTAA
Found at i:15812005 original size:22 final size:22
Alignment explanation
Indices: 15811977--15812021 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
15811967 AGGGGGAGTG
15811977 TAGGAATATTCTGTAAATATTT
1 TAGGAATATTCTGTAAATATTT
* *
15811999 TAGGAATATTTTGTAGATATTT
1 TAGGAATATTCTGTAAATATTT
15812021 T
1 T
15812022 CTTTATTAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.33, C:0.02, G:0.16, T:0.49
Consensus pattern (22 bp):
TAGGAATATTCTGTAAATATTT
Found at i:15817664 original size:24 final size:24
Alignment explanation
Indices: 15817632--15817691 Score: 68
Period size: 24 Copynumber: 2.5 Consensus size: 24
15817622 AGGAAGGCGA
* *
15817632 TGGATATGAAGATAAAG-CCAATGG
1 TGGAGATGAAGAT-AAGTACAATGG
*
15817656 TGGAGATGAAGATGAGTACAATGG
1 TGGAGATGAAGATAAGTACAATGG
*
15817680 TGGAGGTGAAGA
1 TGGAGATGAAGA
15817692 CGAAGACGAT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
23 2 0.06
24 29 0.94
ACGTcount: A:0.38, C:0.05, G:0.37, T:0.20
Consensus pattern (24 bp):
TGGAGATGAAGATAAGTACAATGG
Found at i:15826121 original size:20 final size:19
Alignment explanation
Indices: 15826094--15826135 Score: 59
Period size: 20 Copynumber: 2.2 Consensus size: 19
15826084 CCCTTCAAAT
15826094 TTTCTTACTTT-CATTTGCA
1 TTTCTTACTTTCCA-TTGCA
15826113 TTTCATTACTTTCCATTGCA
1 TTTC-TTACTTTCCATTGCA
15826133 TTT
1 TTT
15826136 ACTATCTTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 4 0.19
20 15 0.71
21 2 0.10
ACGTcount: A:0.17, C:0.21, G:0.05, T:0.57
Consensus pattern (19 bp):
TTTCTTACTTTCCATTGCA
Found at i:15826814 original size:25 final size:25
Alignment explanation
Indices: 15826780--15826999 Score: 234
Period size: 25 Copynumber: 8.8 Consensus size: 25
15826770 TCCTATACAT
*
15826780 GTATGCTCACACGAGTTGTGAATCG
1 GTATGCTCACACGAGTTGTGAATCA
*
15826805 GTATGCTCACATGA-TCTGTGAATCA
1 GTATGCTCACACGAGT-TGTGAATCA
* * *
15826830 GTATGCTCACACGAGCTATAAATCA
1 GTATGCTCACACGAGTTGTGAATCA
15826855 GTATGCTCACACGA-TCTGTGAATC-
1 GTATGCTCACACGAGT-TGTGAATCA
*
15826879 GATATGCTCACACGA-TCTGTGAATCG
1 G-TATGCTCACACGAGT-TGTGAATCA
*
15826905 GTATGCTCACACGA-TCTGTGAATCG
1 GTATGCTCACACGAGT-TGTGAATCA
* * * *
15826930 GTATGCTCACACAAGCTATAAATCA
1 GTATGCTCACACGAGTTGTGAATCA
* *
15826955 GTATGCTCACATGAGCTGTGAATCA
1 GTATGCTCACACGAGTTGTGAATCA
*
15826980 GTATGCTCACACGAGCTGTG
1 GTATGCTCACACGAGTTGTG
15827000 GGTCGAAACG
Statistics
Matches: 170, Mismatches: 19, Indels: 12
0.85 0.09 0.06
Matches are distributed among these distances:
24 2 0.01
25 167 0.98
26 1 0.01
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.27
Consensus pattern (25 bp):
GTATGCTCACACGAGTTGTGAATCA
Found at i:15826859 original size:50 final size:50
Alignment explanation
Indices: 15826780--15826996 Score: 301
Period size: 50 Copynumber: 4.3 Consensus size: 50
15826770 TCCTATACAT
* * * * *
15826780 GTATGCTCACACGAGTTGTGAATCGGTATGCTCACATGATCTGTGAATCA
1 GTATGCTCACACGAGCTATAAATCAGTATGCTCACACGATCTGTGAATCA
15826830 GTATGCTCACACGAGCTATAAATCAGTATGCTCACACGATCTGTGAATC-
1 GTATGCTCACACGAGCTATAAATCAGTATGCTCACACGATCTGTGAATCA
* * * * *
15826879 GATATGCTCACACGATCTGTGAATCGGTATGCTCACACGATCTGTGAATCG
1 G-TATGCTCACACGAGCTATAAATCAGTATGCTCACACGATCTGTGAATCA
* * *
15826930 GTATGCTCACACAAGCTATAAATCAGTATGCTCACATGAGCTGTGAATCA
1 GTATGCTCACACGAGCTATAAATCAGTATGCTCACACGATCTGTGAATCA
15826980 GTATGCTCACACGAGCT
1 GTATGCTCACACGAGCT
15826997 GTGGGTCGAA
Statistics
Matches: 147, Mismatches: 18, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
49 1 0.01
50 145 0.99
51 1 0.01
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.27
Consensus pattern (50 bp):
GTATGCTCACACGAGCTATAAATCAGTATGCTCACACGATCTGTGAATCA
Found at i:15826999 original size:75 final size:74
Alignment explanation
Indices: 15826780--15826999 Score: 305
Period size: 75 Copynumber: 2.9 Consensus size: 74
15826770 TCCTATACAT
*
15826780 GTATGCTCACACGAGTTGTGAATCGGTATGCTCACATGATCTGTGAATCAGTATGCTCACACGAG
1 GTATGCTCACACGAGCTGTGAATC-GTATGCTCACATGATCTGTGAATCAGTATGCTCACACGAG
* *
15826845 CTATAAATCA
65 CTGTGAATCA
* * * *
15826855 GTATGCTCACACGATCTGTGAATCGATATGCTCACACGATCTGTGAATCGGTATGCTCACACGAT
1 GTATGCTCACACGAGCTGTGAATCG-TATGCTCACATGATCTGTGAATCAGTATGCTCACACGAG
*
15826920 CTGTGAATCG
65 CTGTGAATCA
* * * *
15826930 GTATGCTCACACAAGCTATAAATCAGTATGCTCACATGAGCTGTGAATCAGTATGCTCACACGAG
1 GTATGCTCACACGAGCTGTGAATC-GTATGCTCACATGATCTGTGAATCAGTATGCTCACACGAG
15826995 CTGTG
65 CTGTG
15827000 GGTCGAAACG
Statistics
Matches: 127, Mismatches: 16, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
74 1 0.01
75 125 0.98
76 1 0.01
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.27
Consensus pattern (74 bp):
GTATGCTCACACGAGCTGTGAATCGTATGCTCACATGATCTGTGAATCAGTATGCTCACACGAGC
TGTGAATCA
Found at i:15828023 original size:18 final size:19
Alignment explanation
Indices: 15827988--15828023 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
15827978 TTAACAATCG
*
15827988 AAATTTATTTTATAATAAA
1 AAATATATTTTATAATAAA
15828007 AAATATATTTT-TAATAA
1 AAATATATTTTATAATAA
15828024 TCAATGTCAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 6 0.38
19 10 0.62
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (19 bp):
AAATATATTTTATAATAAA
Found at i:15829083 original size:15 final size:15
Alignment explanation
Indices: 15829065--15829093 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
15829055 AATAATCCCT
15829065 AAACTATTAAATATG
1 AAACTATTAAATATG
15829080 AAACTATTAAATAT
1 AAACTATTAAATAT
15829094 AAGAATTGGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.55, C:0.07, G:0.03, T:0.34
Consensus pattern (15 bp):
AAACTATTAAATATG
Found at i:15830166 original size:22 final size:24
Alignment explanation
Indices: 15830141--15830184 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
15830131 CTATCTAGTT
15830141 ATCAAATC-TCT-AAGATTACAAA
1 ATCAAATCTTCTAAAGATTACAAA
*
15830163 ATCATATCTTCTAAAGATTACA
1 ATCAAATCTTCTAAAGATTACA
15830185 TTTAATGTCT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 7 0.37
23 3 0.16
24 9 0.47
ACGTcount: A:0.45, C:0.18, G:0.05, T:0.32
Consensus pattern (24 bp):
ATCAAATCTTCTAAAGATTACAAA
Found at i:15836824 original size:16 final size:17
Alignment explanation
Indices: 15836803--15836834 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
15836793 AATTTTATCA
15836803 TTATAAATT-TAAAATT
1 TTATAAATTATAAAATT
15836819 TTATAAATTATAAAAT
1 TTATAAATTATAAAAT
15836835 GACCTAAATG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (17 bp):
TTATAAATTATAAAATT
Found at i:15846566 original size:22 final size:22
Alignment explanation
Indices: 15846523--15846575 Score: 63
Period size: 22 Copynumber: 2.4 Consensus size: 22
15846513 GAAATAGAGG
*
15846523 ATATCAGATACAATTGCAAAAC
1 ATATCAGATACAATTACAAAAC
*
15846545 ATATCAGATACAGA-TACGAAAC
1 ATATCAGATACA-ATTACAAAAC
*
15846567 AGATCAGAT
1 ATATCAGAT
15846576 GTAGATGCAG
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
22 26 0.96
23 1 0.04
ACGTcount: A:0.49, C:0.17, G:0.13, T:0.21
Consensus pattern (22 bp):
ATATCAGATACAATTACAAAAC
Found at i:15848106 original size:541 final size:541
Alignment explanation
Indices: 15847077--15848667 Score: 2771
Period size: 541 Copynumber: 2.9 Consensus size: 541
15847067 CCACGTTCTA
*
15847077 GATATGC-AAAAAATTTGGATGCATGAATGAAATTATGCATGGTTGTATGATATCCAAAAGGAAC
1 GATATGCAAAAAAATTTGGATGCACGAATGAAATTATGCATGGTTGTATGATATCCAAAAGGAAC
*
15847141 AAAGGGTGGATTATTCTACAATTCAAAAGATAATACGATTAAAGTTTTTACTCATGCTGCTTTTC
66 AAAGGGTGGATTATTCTACAATCCAAAAGATAATACGATTAAAGTTTTTACTCATGCTGCTTTTC
*
15847206 TTCAAGAAAACTATACGAATAACTTTAAACCTCGAAGTAAAATGGTACTCGAGGAACTTTCAGGA
131 TTCAAGAAAACTATATGAATAACTTTAAACCTCGAAGTAAAATGGTACTCGAGGAACTTTCAGGA
* *
15847271 GTTGTAGAATAATCACCAAGTTCAATTCTCAAGAAAGTTGTGGAAAGACCTACAAACAATCAACA
196 GTTGTAGAATAATCACCAAGTTCAATTCTCGAGAAAGTTGTGGAAAGACCTACAAACGATCAACA
* * *
15847336 ATATAGGACAATTTGTTATAGTAGGAGAGTTTCTAAGAAATTAGACTTATTCATCTATGATAGTA
261 ATATAGGGCAATTCGTTATAGTAGGAGAGTTTCTAAGAAACTAGACTTATTCATCTATGATAGTA
* ** *
15847401 GTATTTATATTATGGAAGAAAATCATGAGGATGATGATCCACTCACTTACAAGGAGGCTATGCAA
326 GTATTTATATTACGGAAGCCAATCATGAGGATGATGATCCACTCACTTACAAGGAGGCTATGCAG
*
15847466 GACATTGATTCCAAGCTCTGGAAACAGACCATGGATGCCGAAATGGATTCTATGAAATCCAATAT
391 GACATTGATTCCAAGCTCTGGAAACAGACCATGGATGCCGAAATGGATTCTATGAAATCCAATAC
* *
15847531 AGTATGGGAACTTGTATACTTACCAGTTGGGATTAAACTTATAGGGTGTAAGTGGATATGC-AAA
456 GGTGTGGGAACTTGTATACTTACCAGTTGGGATTAAACTTATAGGGTGTAAGTGGATAT-CAAAA
15847595 AAATCCACTCACTTACAAGGAG
520 AAATCCACTCACTTACAAGGAG
15847617 GATATGCAAAAAAATTTGGATGCACGAATGAAATTATGCATGGTTGTATGATATCCAAAAGGAAC
1 GATATGCAAAAAAATTTGGATGCACGAATGAAATTATGCATGGTTGTATGATATCCAAAAGGAAC
* * *
15847682 AAATGGTGGATTATTTTACAATCCAAAAGATAATATGATTAAAGTTTTTACTCATGCTGCTTTTC
66 AAAGGGTGGATTATTCTACAATCCAAAAGATAATACGATTAAAGTTTTTACTCATGCTGCTTTTC
*
15847747 TTCAAGAAAACTATATGAATAACTTTAAACCTC-ACAGTAAAACGGTACTCGAGGAACTTTCAGG
131 TTCAAGAAAACTATATGAATAACTTTAAACCTCGA-AGTAAAATGGTACTCGAGGAACTTTCAGG
* *
15847811 AGTTGTAGAATAATCACCAAGTTCAATTCTCGAGAAAGTTGTGGAAAAACCTGCAAACGATCAAC
195 AGTTGTAGAATAATCACCAAGTTCAATTCTCGAGAAAGTTGTGGAAAGACCTACAAACGATCAAC
* *
15847876 AATATAGGGCAATTCGTTATAGTAGGAGAGTTTCTAAGAAACTAAACTTCTTCATCTATGATAGT
260 AATATAGGGCAATTCGTTATAGTAGGAGAGTTTCTAAGAAACTAGACTTATTCATCTATGATAGT
* * *
15847941 AGTATTTATATTACAGAAGCCAATCATAAGGATGATGATCCACTCACTTACAAGGAAGCTATGCA
325 AGTATTTATATTACGGAAGCCAATCATGAGGATGATGATCCACTCACTTACAAGGAGGCTATGCA
*
15848006 GGACGTTGATTCCAAGCTCTGGAAACAGACCATGGATGCCGAAATGGATTCTATGAAATCCAATA
390 GGACATTGATTCCAAGCTCTGGAAACAGACCATGGATGCCGAAATGGATTCTATGAAATCCAATA
15848071 CGGTGTGGGAACTTGTATACTTACCAGTTGGGATTAAACTTATA-GGTGTAAGTGGATATCAAAA
455 CGGTGTGGGAACTTGTATACTTACCAGTTGGGATTAAACTTATAGGGTGTAAGTGGATATCAAAA
15848135 AAATCCACTCACTTACAAGGAG
520 AAATCCACTCACTTACAAGGAG
* * *
15848157 GATATGTAAAAAAA-TTGGATGCACGAATGAAATTATGCACGATTGTATGATATCCAAAAGGAAC
1 GATATGCAAAAAAATTTGGATGCACGAATGAAATTATGCATGGTTGTATGATATCCAAAAGGAAC
*
15848221 AAAGGGTGGATTATTCTACAATCCAAAAGATAATACGATTAAAATTTTTACTCATGCTGCTTTTC
66 AAAGGGTGGATTATTCTACAATCCAAAAGATAATACGATTAAAGTTTTTACTCATGCTGCTTTTC
*
15848286 TTCAAGAAAACTATATGAATAACTTTAAACCTCGAAGTAAAATGGTACTCAAGGAACTTTCAGGA
131 TTCAAGAAAACTATATGAATAACTTTAAACCTCGAAGTAAAATGGTACTCGAGGAACTTTCAGGA
* * *
15848351 GTTGTAGAATAATCACCAAGTTCAATTCTCGAGAAAGTTATGGAAAGACCTACAAATGATCAATA
196 GTTGTAGAATAATCACCAAGTTCAATTCTCGAGAAAGTTGTGGAAAGACCTACAAACGATCAACA
15848416 ATATAGGGCAATTCGTTATAGTAGGAGAGTTTCTAAGAAACTAGACTTATTCATCTATGATAGTA
261 ATATAGGGCAATTCGTTATAGTAGGAGAGTTTCTAAGAAACTAGACTTATTCATCTATGATAGTA
15848481 GTATTTATATTACGGAAGCCAATCATGAGGATGATGATCCACTCACTTACAAGGAGGCTATAG-A
326 GTATTTATATTACGGAAGCCAATCATGAGGATGATGATCCACTCACTTACAAGGAGGCTAT-GCA
* *
15848545 GGACATTGATTCCAAGCTCTGGAAACAGACAATGGATACCGAAATGGATTCTATGAAATCCAATA
390 GGACATTGATTCCAAGCTCTGGAAACAGACCATGGATGCCGAAATGGATTCTATGAAATCCAATA
*
15848610 CGGTGTGGGAACTTGTATACTTACCAGTTGGGATTAAACCTATAGGGTGTAAGTGGAT
455 CGGTGTGGGAACTTGTATACTTACCAGTTGGGATTAAACTTATAGGGTGTAAGTGGAT
15848668 CTACAAGAAA
Statistics
Matches: 995, Mismatches: 50, Indels: 12
0.94 0.05 0.01
Matches are distributed among these distances:
539 458 0.46
540 76 0.08
541 461 0.46
ACGTcount: A:0.37, C:0.15, G:0.19, T:0.28
Consensus pattern (541 bp):
GATATGCAAAAAAATTTGGATGCACGAATGAAATTATGCATGGTTGTATGATATCCAAAAGGAAC
AAAGGGTGGATTATTCTACAATCCAAAAGATAATACGATTAAAGTTTTTACTCATGCTGCTTTTC
TTCAAGAAAACTATATGAATAACTTTAAACCTCGAAGTAAAATGGTACTCGAGGAACTTTCAGGA
GTTGTAGAATAATCACCAAGTTCAATTCTCGAGAAAGTTGTGGAAAGACCTACAAACGATCAACA
ATATAGGGCAATTCGTTATAGTAGGAGAGTTTCTAAGAAACTAGACTTATTCATCTATGATAGTA
GTATTTATATTACGGAAGCCAATCATGAGGATGATGATCCACTCACTTACAAGGAGGCTATGCAG
GACATTGATTCCAAGCTCTGGAAACAGACCATGGATGCCGAAATGGATTCTATGAAATCCAATAC
GGTGTGGGAACTTGTATACTTACCAGTTGGGATTAAACTTATAGGGTGTAAGTGGATATCAAAAA
AATCCACTCACTTACAAGGAG
Found at i:15848421 original size:539 final size:540
Alignment explanation
Indices: 15847077--15848667 Score: 2767
Period size: 539 Copynumber: 2.9 Consensus size: 540
15847067 CCACGTTCTA
* *
15847077 GATATGCAAAAAATTTGGATGCATGAATGAAATTATGCATGGTTGTATGATATCCAAAAGGAACA
1 GATATGCAAAAAAATTGGATGCACGAATGAAATTATGCATGGTTGTATGATATCCAAAAGGAACA
*
15847142 AAGGGTGGATTATTCTACAATTCAAAAGATAATACGATTAAAGTTTTTACTCATGCTGCTTTTCT
66 AAGGGTGGATTATTCTACAATCCAAAAGATAATACGATTAAAGTTTTTACTCATGCTGCTTTTCT
*
15847207 TCAAGAAAACTATACGAATAACTTTAAACCTCGAAGTAAAATGGTACTCGAGGAACTTTCAGGAG
131 TCAAGAAAACTATATGAATAACTTTAAACCTCGAAGTAAAATGGTACTCGAGGAACTTTCAGGAG
* *
15847272 TTGTAGAATAATCACCAAGTTCAATTCTCAAGAAAGTTGTGGAAAGACCTACAAACAATCAACAA
196 TTGTAGAATAATCACCAAGTTCAATTCTCGAGAAAGTTGTGGAAAGACCTACAAACGATCAACAA
* * *
15847337 TATAGGACAATTTGTTATAGTAGGAGAGTTTCTAAGAAATTAGACTTATTCATCTATGATAGTAG
261 TATAGGGCAATTCGTTATAGTAGGAGAGTTTCTAAGAAACTAGACTTATTCATCTATGATAGTAG
* ** *
15847402 TATTTATATTATGGAAGAAAATCATGAGGATGATGATCCACTCACTTACAAGGAGGCTATGCAAG
326 TATTTATATTACGGAAGCCAATCATGAGGATGATGATCCACTCACTTACAAGGAGGCTATGCAGG
**
15847467 ACATTGATTCCAAGCTCTGGAAACAGACCATGGATGCCGAAATGGATTCTATGAAATCCAATATA
391 ACATTGATTCCAAGCTCTGGAAACAGACCATGGATGCCGAAATGGATTCTATGAAATCCAATACG
*
15847532 GTATGGGAACTTGTATACTTACCAGTTGGGATTAAACTTATAGGGTGTAAGTGGATATGCAAAAA
456 GTGTGGGAACTTGTATACTTACCAGTTGGGATTAAACTTATAGGGTGTAAGTGGATATGCAAAAA
15847597 ATCCACTCACTTACAAGGAG
521 ATCCACTCACTTACAAGGAG
15847617 GATATGCAAAAAAATTTGGATGCACGAATGAAATTATGCATGGTTGTATGATATCCAAAAGGAAC
1 GATATGCAAAAAAA-TTGGATGCACGAATGAAATTATGCATGGTTGTATGATATCCAAAAGGAAC
* * *
15847682 AAATGGTGGATTATTTTACAATCCAAAAGATAATATGATTAAAGTTTTTACTCATGCTGCTTTTC
65 AAAGGGTGGATTATTCTACAATCCAAAAGATAATACGATTAAAGTTTTTACTCATGCTGCTTTTC
*
15847747 TTCAAGAAAACTATATGAATAACTTTAAACCTC-ACAGTAAAACGGTACTCGAGGAACTTTCAGG
130 TTCAAGAAAACTATATGAATAACTTTAAACCTCGA-AGTAAAATGGTACTCGAGGAACTTTCAGG
* *
15847811 AGTTGTAGAATAATCACCAAGTTCAATTCTCGAGAAAGTTGTGGAAAAACCTGCAAACGATCAAC
194 AGTTGTAGAATAATCACCAAGTTCAATTCTCGAGAAAGTTGTGGAAAGACCTACAAACGATCAAC
* *
15847876 AATATAGGGCAATTCGTTATAGTAGGAGAGTTTCTAAGAAACTAAACTTCTTCATCTATGATAGT
259 AATATAGGGCAATTCGTTATAGTAGGAGAGTTTCTAAGAAACTAGACTTATTCATCTATGATAGT
* * *
15847941 AGTATTTATATTACAGAAGCCAATCATAAGGATGATGATCCACTCACTTACAAGGAAGCTATGCA
324 AGTATTTATATTACGGAAGCCAATCATGAGGATGATGATCCACTCACTTACAAGGAGGCTATGCA
*
15848006 GGACGTTGATTCCAAGCTCTGGAAACAGACCATGGATGCCGAAATGGATTCTATGAAATCCAATA
389 GGACATTGATTCCAAGCTCTGGAAACAGACCATGGATGCCGAAATGGATTCTATGAAATCCAATA
15848071 CGGTGTGGGAACTTGTATACTTACCAGTTGGGATTAAACTTATA-GGTGTAAGTGGATAT-CAAA
454 CGGTGTGGGAACTTGTATACTTACCAGTTGGGATTAAACTTATAGGGTGTAAGTGGATATGC-AA
15848134 AAAATCCACTCACTTACAAGGAG
518 AAAATCCACTCACTTACAAGGAG
* * *
15848157 GATATGTAAAAAAATTGGATGCACGAATGAAATTATGCACGATTGTATGATATCCAAAAGGAACA
1 GATATGCAAAAAAATTGGATGCACGAATGAAATTATGCATGGTTGTATGATATCCAAAAGGAACA
*
15848222 AAGGGTGGATTATTCTACAATCCAAAAGATAATACGATTAAAATTTTTACTCATGCTGCTTTTCT
66 AAGGGTGGATTATTCTACAATCCAAAAGATAATACGATTAAAGTTTTTACTCATGCTGCTTTTCT
*
15848287 TCAAGAAAACTATATGAATAACTTTAAACCTCGAAGTAAAATGGTACTCAAGGAACTTTCAGGAG
131 TCAAGAAAACTATATGAATAACTTTAAACCTCGAAGTAAAATGGTACTCGAGGAACTTTCAGGAG
* * *
15848352 TTGTAGAATAATCACCAAGTTCAATTCTCGAGAAAGTTATGGAAAGACCTACAAATGATCAATAA
196 TTGTAGAATAATCACCAAGTTCAATTCTCGAGAAAGTTGTGGAAAGACCTACAAACGATCAACAA
15848417 TATAGGGCAATTCGTTATAGTAGGAGAGTTTCTAAGAAACTAGACTTATTCATCTATGATAGTAG
261 TATAGGGCAATTCGTTATAGTAGGAGAGTTTCTAAGAAACTAGACTTATTCATCTATGATAGTAG
15848482 TATTTATATTACGGAAGCCAATCATGAGGATGATGATCCACTCACTTACAAGGAGGCTATAG-AG
326 TATTTATATTACGGAAGCCAATCATGAGGATGATGATCCACTCACTTACAAGGAGGCTAT-GCAG
* *
15848546 GACATTGATTCCAAGCTCTGGAAACAGACAATGGATACCGAAATGGATTCTATGAAATCCAATAC
390 GACATTGATTCCAAGCTCTGGAAACAGACCATGGATGCCGAAATGGATTCTATGAAATCCAATAC
*
15848611 GGTGTGGGAACTTGTATACTTACCAGTTGGGATTAAACCTATAGGGTGTAAGTGGAT
455 GGTGTGGGAACTTGTATACTTACCAGTTGGGATTAAACTTATAGGGTGTAAGTGGAT
15848668 CTACAAGAAA
Statistics
Matches: 994, Mismatches: 51, Indels: 12
0.94 0.05 0.01
Matches are distributed among these distances:
539 458 0.46
540 82 0.08
541 454 0.46
ACGTcount: A:0.37, C:0.15, G:0.19, T:0.28
Consensus pattern (540 bp):
GATATGCAAAAAAATTGGATGCACGAATGAAATTATGCATGGTTGTATGATATCCAAAAGGAACA
AAGGGTGGATTATTCTACAATCCAAAAGATAATACGATTAAAGTTTTTACTCATGCTGCTTTTCT
TCAAGAAAACTATATGAATAACTTTAAACCTCGAAGTAAAATGGTACTCGAGGAACTTTCAGGAG
TTGTAGAATAATCACCAAGTTCAATTCTCGAGAAAGTTGTGGAAAGACCTACAAACGATCAACAA
TATAGGGCAATTCGTTATAGTAGGAGAGTTTCTAAGAAACTAGACTTATTCATCTATGATAGTAG
TATTTATATTACGGAAGCCAATCATGAGGATGATGATCCACTCACTTACAAGGAGGCTATGCAGG
ACATTGATTCCAAGCTCTGGAAACAGACCATGGATGCCGAAATGGATTCTATGAAATCCAATACG
GTGTGGGAACTTGTATACTTACCAGTTGGGATTAAACTTATAGGGTGTAAGTGGATATGCAAAAA
ATCCACTCACTTACAAGGAG
Found at i:15854667 original size:46 final size:46
Alignment explanation
Indices: 15854597--15854692 Score: 149
Period size: 46 Copynumber: 2.1 Consensus size: 46
15854587 ATTCAAGTGA
* *
15854597 ATATGTATATTTTTATAACTCTTCATATTGGCTAGTCAAATGATAT
1 ATATGTATACTTTTATAACTCTTCATATTGGCTAGTCAAATGATAC
*
15854643 ATATGTTTACTTTTATAAGC-CTTCATATTGGCTAGTCAAATGATAC
1 ATATGTATACTTTTATAA-CTCTTCATATTGGCTAGTCAAATGATAC
15854689 ATAT
1 ATAT
15854693 AACAAAATAA
Statistics
Matches: 46, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
46 45 0.98
47 1 0.02
ACGTcount: A:0.32, C:0.12, G:0.11, T:0.44
Consensus pattern (46 bp):
ATATGTATACTTTTATAACTCTTCATATTGGCTAGTCAAATGATAC
Found at i:15870793 original size:5 final size:5
Alignment explanation
Indices: 15870783--15870809 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
15870773 CATATTTAAT
15870783 ATTTA ATTTA ATTTA ATTTA ATTTA AT
1 ATTTA ATTTA ATTTA ATTTA ATTTA AT
15870810 ACTTATCTTG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (5 bp):
ATTTA
Found at i:15872281 original size:23 final size:23
Alignment explanation
Indices: 15872217--15872284 Score: 68
Period size: 23 Copynumber: 3.0 Consensus size: 23
15872207 TGTAGTATAT
* *
15872217 TATGCATCGAAATGCCAAAATGA
1 TATGCATCGAAGTACCAAAATGA
* *
15872240 TATGCA-CTGAAGCGA-CAAAATGG
1 TATGCATC-GAAG-TACCAAAATGA
15872263 TATGCATCGAAGTACCAAAATG
1 TATGCATCGAAGTACCAAAATG
15872285 TTCCCACCAA
Statistics
Matches: 36, Mismatches: 5, Indels: 8
0.73 0.10 0.16
Matches are distributed among these distances:
22 2 0.06
23 33 0.92
24 1 0.03
ACGTcount: A:0.41, C:0.18, G:0.21, T:0.21
Consensus pattern (23 bp):
TATGCATCGAAGTACCAAAATGA
Found at i:15873783 original size:3 final size:3
Alignment explanation
Indices: 15873775--15873827 Score: 56
Period size: 3 Copynumber: 18.0 Consensus size: 3
15873765 AATCAAGATT
* **
15873775 TTA TTA TTA TTA TTAA TTA TTA GTA TGG TT- TTA -TA TTA TTA TTA
1 TTA TTA TTA TTA TT-A TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
15873819 TTA TTA TTA
1 TTA TTA TTA
15873828 AGTTAAAGAT
Statistics
Matches: 42, Mismatches: 5, Indels: 6
0.79 0.09 0.11
Matches are distributed among these distances:
2 4 0.10
3 35 0.83
4 3 0.07
ACGTcount: A:0.32, C:0.00, G:0.06, T:0.62
Consensus pattern (3 bp):
TTA
Found at i:15873843 original size:35 final size:33
Alignment explanation
Indices: 15873772--15873843 Score: 78
Period size: 32 Copynumber: 2.2 Consensus size: 33
15873762 AAAAATCAAG
* *
15873772 ATTT-TATTATTATTATTAATTATTAGTATGGT
1 ATTTATATTATTATTATTAATTATTAGTAAGAT
15873804 -TTTATATTATTATTATT-ATTATTAAGTTAAAGAT
1 ATTTATATTATTATTATTAATTATT-AG-T-AAGAT
15873838 ATTTAT
1 ATTTAT
15873844 TAATTAAATA
Statistics
Matches: 33, Mismatches: 2, Indels: 7
0.79 0.05 0.17
Matches are distributed among these distances:
31 9 0.27
32 15 0.45
33 1 0.03
34 3 0.09
35 5 0.15
ACGTcount: A:0.35, C:0.00, G:0.07, T:0.58
Consensus pattern (33 bp):
ATTTATATTATTATTATTAATTATTAGTAAGAT
Found at i:15881304 original size:3 final size:3
Alignment explanation
Indices: 15881298--15881359 Score: 74
Period size: 3 Copynumber: 21.0 Consensus size: 3
15881288 ATCTAAGATT
* **
15881298 TTA TTA TTA TTA TTA TTAA TTA TTA GTA TGG TT- TTA -TA TTA TTA
1 TTA TTA TTA TTA TTA TT-A TTA TTA TTA TTA TTA TTA TTA TTA TTA
15881342 TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA
15881360 AGTTAAAGAT
Statistics
Matches: 51, Mismatches: 5, Indels: 6
0.82 0.08 0.10
Matches are distributed among these distances:
2 4 0.08
3 44 0.86
4 3 0.06
ACGTcount: A:0.32, C:0.00, G:0.05, T:0.63
Consensus pattern (3 bp):
TTA
Found at i:15887615 original size:3 final size:3
Alignment explanation
Indices: 15887609--15887670 Score: 74
Period size: 3 Copynumber: 21.0 Consensus size: 3
15887599 ATCTAAGATT
* **
15887609 TTA TTA TTA TTA TTA TTAA TTA TTA GTA TGG TT- TTA -TA TTA TTA
1 TTA TTA TTA TTA TTA TT-A TTA TTA TTA TTA TTA TTA TTA TTA TTA
15887653 TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA
15887671 AGTTAAAGAT
Statistics
Matches: 51, Mismatches: 5, Indels: 6
0.82 0.08 0.10
Matches are distributed among these distances:
2 4 0.08
3 44 0.86
4 3 0.06
ACGTcount: A:0.32, C:0.00, G:0.05, T:0.63
Consensus pattern (3 bp):
TTA
Found at i:15893929 original size:3 final size:3
Alignment explanation
Indices: 15893923--15893978 Score: 62
Period size: 3 Copynumber: 19.0 Consensus size: 3
15893913 ATCTAAGATT
* **
15893923 TTA TTA TTA TTA TTAA TTA TTA GTA TGG TT- TTA -TA TTA TTA TTA
1 TTA TTA TTA TTA TT-A TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
15893967 TTA TTA TTA TTA
1 TTA TTA TTA TTA
15893979 AGTTAAAGAT
Statistics
Matches: 45, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
2 4 0.09
3 38 0.84
4 3 0.07
ACGTcount: A:0.32, C:0.00, G:0.05, T:0.62
Consensus pattern (3 bp):
TTA
Found at i:15894337 original size:22 final size:21
Alignment explanation
Indices: 15894306--15894346 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 21
15894296 TTAATTAAGT
15894306 AAATAAAAGAATA-AAAGAATG
1 AAATAAAAGAA-ACAAAGAATG
15894327 AAATATAAAGAAACAAAGAA
1 AAATA-AAAGAAACAAAGAA
15894347 AAGAAAGAAC
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 6 0.33
22 12 0.67
ACGTcount: A:0.73, C:0.02, G:0.12, T:0.12
Consensus pattern (21 bp):
AAATAAAAGAAACAAAGAATG
Found at i:15896897 original size:68 final size:68
Alignment explanation
Indices: 15896788--15897064 Score: 358
Period size: 68 Copynumber: 4.1 Consensus size: 68
15896778 GTTGGAATCG
* * * * * * * *
15896788 GAAGTCCGCCAAGATAGTAAACAAGAGTTCATATTGTGTAAGACCATATCTAGGCTATGTCAACA
1 GAAGTCCGCCAGGACAATAAACATGGGTTCATATTGTGTAAGACCATAACTGGGCTATGGCAACA
15896853 AAT
66 AAT
* * *
15896856 GAAGTCCGCTAGGACATTAAACATGGGTTCATATTGTGTAAGACCAT-ACTTGCGCTATGGCAAC
1 GAAGTCCGCCAGGACAATAAACATGGGTTCATATTGTGTAAGACCATAAC-TGGGCTATGGCAAC
15896920 AAAT
65 AAAT
* ** * * *
15896924 AAAGTGGGCCAGGACAGTAAACATGGGTTCATATTGTGTAAGACCATAACTGGGCTATGACAAAA
1 GAAGTCCGCCAGGACAATAAACATGGGTTCATATTGTGTAAGACCATAACTGGGCTATGGCAACA
15896989 AAT
66 AAT
* * *
15896992 GAAGTCCACCAGGACAATAAATATGGGTTTATATTGTGTAAGACCATAACTGGGCTATGGCAACA
1 GAAGTCCGCCAGGACAATAAACATGGGTTCATATTGTGTAAGACCATAACTGGGCTATGGCAACA
15897057 AAT
66 AAT
15897060 GAAGT
1 GAAGT
15897065 GCTGGAATGC
Statistics
Matches: 180, Mismatches: 27, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
67 1 0.01
68 177 0.98
69 2 0.01
ACGTcount: A:0.36, C:0.17, G:0.22, T:0.25
Consensus pattern (68 bp):
GAAGTCCGCCAGGACAATAAACATGGGTTCATATTGTGTAAGACCATAACTGGGCTATGGCAACA
AAT
Found at i:15900790 original size:16 final size:17
Alignment explanation
Indices: 15900761--15900792 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
15900751 CAATTTAGTC
15900761 CAAAATTCATACTTTTA
1 CAAAATTCATACTTTTA
15900778 CAAAATT-ATACTTTT
1 CAAAATTCATACTTTT
15900793 GCCCCTAATA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.41, C:0.16, G:0.00, T:0.44
Consensus pattern (17 bp):
CAAAATTCATACTTTTA
Found at i:15903620 original size:26 final size:26
Alignment explanation
Indices: 15903591--15903641 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
15903581 AATAAAATAA
15903591 AACATTCAATATTTCAATTTAATTAG
1 AACATTCAATATTTCAATTTAATTAG
* *
15903617 AACATTGAATATTTCAGTTTAATTA
1 AACATTCAATATTTCAATTTAATTA
15903642 ACATTAAGTT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.41, C:0.10, G:0.06, T:0.43
Consensus pattern (26 bp):
AACATTCAATATTTCAATTTAATTAG
Found at i:15920325 original size:26 final size:26
Alignment explanation
Indices: 15920296--15920346 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
15920286 AATAAAAGAA
15920296 AACATTCAATATTTCAATTTAATTAT
1 AACATTCAATATTTCAATTTAATTAT
*
15920322 AACATTCAATATTTCAGTTTAATTA
1 AACATTCAATATTTCAATTTAATTA
15920347 GCATTAATTT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.41, C:0.12, G:0.02, T:0.45
Consensus pattern (26 bp):
AACATTCAATATTTCAATTTAATTAT
Found at i:15922434 original size:26 final size:26
Alignment explanation
Indices: 15922405--15922455 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
15922395 AATAAAAGAA
15922405 AACATTCAATATTTCAATTTAATTAT
1 AACATTCAATATTTCAATTTAATTAT
*
15922431 AACATTCAATATTTCAGTTTAATTA
1 AACATTCAATATTTCAATTTAATTA
15922456 GCATTAATTT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.41, C:0.12, G:0.02, T:0.45
Consensus pattern (26 bp):
AACATTCAATATTTCAATTTAATTAT
Found at i:15924540 original size:26 final size:26
Alignment explanation
Indices: 15924511--15924561 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
15924501 CAATAAAGAA
15924511 AACATTCAATATTTCAATTTAATTAT
1 AACATTCAATATTTCAATTTAATTAT
*
15924537 AACATTCAATATTTCAGTTTAATTA
1 AACATTCAATATTTCAATTTAATTA
15924562 GCATTAATTT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.41, C:0.12, G:0.02, T:0.45
Consensus pattern (26 bp):
AACATTCAATATTTCAATTTAATTAT
Found at i:15926649 original size:26 final size:26
Alignment explanation
Indices: 15926620--15926670 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
15926610 CAATAAAGAA
15926620 AACATTCAATATTTCAATTTAATTAT
1 AACATTCAATATTTCAATTTAATTAT
*
15926646 AACATTCAATATTTCAGTTTAATTA
1 AACATTCAATATTTCAATTTAATTA
15926671 GCATTAATTT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.41, C:0.12, G:0.02, T:0.45
Consensus pattern (26 bp):
AACATTCAATATTTCAATTTAATTAT
Found at i:15928758 original size:26 final size:26
Alignment explanation
Indices: 15928729--15928779 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
15928719 AATAAAAGAA
15928729 AACATTCAATATTTCAATTTAATTAT
1 AACATTCAATATTTCAATTTAATTAT
*
15928755 AACATTCAATATTTCAGTTTAATTA
1 AACATTCAATATTTCAATTTAATTA
15928780 GCATTAATTT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.41, C:0.12, G:0.02, T:0.45
Consensus pattern (26 bp):
AACATTCAATATTTCAATTTAATTAT
Found at i:15936249 original size:46 final size:46
Alignment explanation
Indices: 15936201--15936416 Score: 265
Period size: 46 Copynumber: 4.7 Consensus size: 46
15936191 GGCATCCAAA
* * *
15936201 CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAA
1 CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAG
* *** * * * *
15936247 CTCGTTGAGTTGAGTCTGAGTTCGAGAGATGTA-AC-TAGGCATCCGAG
1 CTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGATGCGAACGC--CCGAG
*
15936294 CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGAGAACGCCCGAG
1 CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAG
* *
15936340 CTCGTTGAGTTGAGTCCAAGTTCACTTATGGATACGAACGCCCGAG
1 CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAG
15936386 CTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 CTCGTTGAGTTGAGTCCGAGTTCACTTATGG
15936417 GCGGGTTACA
Statistics
Matches: 142, Mismatches: 23, Indels: 10
0.81 0.13 0.06
Matches are distributed among these distances:
45 2 0.01
46 106 0.75
47 31 0.22
48 3 0.02
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (46 bp):
CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAG
Found at i:15936350 original size:93 final size:94
Alignment explanation
Indices: 15936191--15936416 Score: 289
Period size: 93 Copynumber: 2.4 Consensus size: 94
15936181 AGGATGTTTG
* * * * *
15936191 GGCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGAGAACGCCCGAACTCGTTGAG
** * * *
15936256 TTGAGTCTGAGTTCGAGAGATGTA-AC-TA
66 TTGAGTCCAAGTTC-ACAGATGGATACGAA
*
15936284 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGAGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGAGAACGCCCGAACTCGTTGAG
**
15936349 TTGAGTCCAAGTTCACTTATGGATACGAA
66 TTGAGTCCAAGTTCACAGATGGATACGAA
*
15936378 CGC--CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
15936417 GCGGGTTACA
Statistics
Matches: 117, Mismatches: 14, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
92 41 0.35
93 73 0.62
94 3 0.03
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.28
Consensus pattern (94 bp):
GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGAGAACGCCCGAACTCGTTGAG
TTGAGTCCAAGTTCACAGATGGATACGAA
Found at i:15943177 original size:26 final size:26
Alignment explanation
Indices: 15943148--15943199 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
15943138 AATAAAAGAA
15943148 AACATTCAATATTTCAATTTAATTAG
1 AACATTCAATATTTCAATTTAATTAG
*
15943174 AACATTCAATATTTCAGTTTAATTAG
1 AACATTCAATATTTCAATTTAATTAG
15943200 CGTTAATTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.40, C:0.12, G:0.06, T:0.42
Consensus pattern (26 bp):
AACATTCAATATTTCAATTTAATTAG
Found at i:15945872 original size:57 final size:54
Alignment explanation
Indices: 15945784--15945898 Score: 151
Period size: 57 Copynumber: 2.1 Consensus size: 54
15945774 AGGAAACGTC
*
15945784 CTGGTGGCTATGCCACAAATTATCTGATCTGGTGGCTCTGCCACATATATATCTGTT
1 CTGGTGGCTATGCCACAAATTATCTGATCTGGTGACTCTGCCAC--AT-TATCTGTT
* * *
15945841 CTGGTGGCTCTGCCAC-GATTATCTGTATCTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTATGCCACAAATTATCTG-ATCTGGTGACTCTGCCACATTATCTGTT
15945895 CTGG
1 CTGG
15945899 CAGCCATGCT
Statistics
Matches: 53, Mismatches: 4, Indels: 5
0.85 0.06 0.08
Matches are distributed among these distances:
54 12 0.23
55 2 0.04
56 8 0.15
57 31 0.58
ACGTcount: A:0.17, C:0.23, G:0.23, T:0.37
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAAATTATCTGATCTGGTGACTCTGCCACATTATCTGTT
Found at i:15945888 original size:27 final size:27
Alignment explanation
Indices: 15945784--15945898 Score: 142
Period size: 28 Copynumber: 4.1 Consensus size: 27
15945774 AGGAAACGTC
* *
15945784 CTGGTGGCTATGCCACAAATTATCTGAT
1 CTGGTGGCTCTGCCAC-AATTATCTGTT
15945812 CTGGTGGCTCTGCCACATATATATCTGTT
1 CTGGTGGCTCTGCCACA-AT-TATCTGTT
*
15945841 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCACAATTATCTGT-T
* *
15945869 CTGGTGACTCTGTCAC-ATTATCTGTT
1 CTGGTGGCTCTGCCACAATTATCTGTT
15945895 CTGG
1 CTGG
15945899 CAGCCATGCT
Statistics
Matches: 79, Mismatches: 5, Indels: 8
0.86 0.05 0.09
Matches are distributed among these distances:
26 5 0.06
27 17 0.22
28 34 0.43
29 23 0.29
ACGTcount: A:0.17, C:0.23, G:0.23, T:0.37
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGTT
Found at i:15949763 original size:27 final size:27
Alignment explanation
Indices: 15949733--15949909 Score: 203
Period size: 27 Copynumber: 6.5 Consensus size: 27
15949723 TATTGAGTCT
* * * *
15949733 GCACACTCAGTGCTATATAATCAACTC
1 GCACACTTAGTGCTACATAGTCAAATC
* *
15949760 GCACACTTAGTGCTACGTAATCAAATC
1 GCACACTTAGTGCTACATAGTCAAATC
15949787 GCACACTTAGTGCTACATAGTCAAACTC
1 GCACACTTAGTGCTACATAGTCAAA-TC
** * *
15949815 GCACACTTAGTGCCGCATGGTCAATTC
1 GCACACTTAGTGCTACATAGTCAAATC
* **
15949842 GCACACTTAGTGC-ATCATATTCATTTC
1 GCACACTTAGTGCTA-CATAGTCAAATC
*
15949869 GCACACTTAGTGCAACATAGTCAAATC
1 GCACACTTAGTGCTACATAGTCAAATC
15949896 GCACACTTAGTGCT
1 GCACACTTAGTGCT
15949910 GTACAATTTA
Statistics
Matches: 129, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 105 0.81
28 24 0.19
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
GCACACTTAGTGCTACATAGTCAAATC
Found at i:15949871 original size:82 final size:81
Alignment explanation
Indices: 15949753--15949908 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
15949743 TGCTATATAA
* *
15949753 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
15949818 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
15949835 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
15949899 CACTTAGTGC
65 CACTTAGTGC
15949909 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:15966472 original size:7 final size:7
Alignment explanation
Indices: 15966460--15966493 Score: 54
Period size: 7 Copynumber: 5.1 Consensus size: 7
15966450 GTGTGTTCTT
15966460 TATTTTA
1 TATTTTA
15966467 TATTTTA
1 TATTTTA
15966474 TATTTT-
1 TATTTTA
15966480 TATTTT-
1 TATTTTA
15966486 TATTTTA
1 TATTTTA
15966493 T
1 T
15966494 TTTAGTTTTC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
6 12 0.46
7 14 0.54
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (7 bp):
TATTTTA
Found at i:15966485 original size:6 final size:6
Alignment explanation
Indices: 15966458--15966496 Score: 53
Period size: 6 Copynumber: 6.3 Consensus size: 6
15966448 TTGTGTGTTC
15966458 TTTATT TTATATT TTATATT TTTATT TTTA-T TTTATT TT
1 TTTATT TT-TATT TT-TATT TTTATT TTTATT TTTATT TT
15966497 AGTTTTCTCA
Statistics
Matches: 31, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
5 5 0.16
6 13 0.42
7 13 0.42
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (6 bp):
TTTATT
Found at i:15968428 original size:25 final size:26
Alignment explanation
Indices: 15968400--15968448 Score: 82
Period size: 25 Copynumber: 1.9 Consensus size: 26
15968390 CAATAAAGAA
15968400 AACATTCAATATTT-AATTTAATTCT
1 AACATTCAATATTTCAATTTAATTCT
*
15968425 AACATTCAATATTTCAGTTTAATT
1 AACATTCAATATTTCAATTTAATT
15968449 AGCATTAATT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 14 0.64
26 8 0.36
ACGTcount: A:0.39, C:0.12, G:0.02, T:0.47
Consensus pattern (26 bp):
AACATTCAATATTTCAATTTAATTCT
Found at i:15970525 original size:25 final size:25
Alignment explanation
Indices: 15970497--15970545 Score: 89
Period size: 25 Copynumber: 2.0 Consensus size: 25
15970487 CAATAAAGAA
15970497 AACATTCAATATTTCAATTTAATTT
1 AACATTCAATATTTCAATTTAATTT
*
15970522 AACATTCAATATTTCAGTTTAATT
1 AACATTCAATATTTCAATTTAATT
15970546 AGCATTAATT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.39, C:0.12, G:0.02, T:0.47
Consensus pattern (25 bp):
AACATTCAATATTTCAATTTAATTT
Found at i:15972624 original size:26 final size:26
Alignment explanation
Indices: 15972595--15972644 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
15972585 CAATAAAGAA
15972595 AACATTCAATATTTCAATTTAATTCT
1 AACATTCAATATTTCAATTTAATTCT
*
15972621 AACATTCAATATTTCAGTTTAATT
1 AACATTCAATATTTCAATTTAATT
15972645 AGCATTAATT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.38, C:0.14, G:0.02, T:0.46
Consensus pattern (26 bp):
AACATTCAATATTTCAATTTAATTCT
Found at i:15974726 original size:26 final size:26
Alignment explanation
Indices: 15974697--15974748 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
15974687 AATAAAAGAA
*
15974697 AACATTCAATATTTCAATTTAATTAG
1 AACATTCAATATTCCAATTTAATTAG
*
15974723 AACATTCAATATTCCAGTTTAATTAG
1 AACATTCAATATTCCAATTTAATTAG
15974749 CATTAATTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.40, C:0.13, G:0.06, T:0.40
Consensus pattern (26 bp):
AACATTCAATATTCCAATTTAATTAG
Done.