Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 82679320
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4050000 characters in sequence are not A, C, G, or T
File 62 of 255
Found at i:17808082 original size:27 final size:26
Alignment explanation
Indices: 17808030--17808085 Score: 78
Period size: 27 Copynumber: 2.1 Consensus size: 26
17808020 CCCTTGACTT
17808030 TTTAAAAATTATGGAAATACCATTGG
1 TTTAAAAATTATGGAAATACCATTGG
*
17808056 TTTACAAAATTACT-GAAATACCTTTGG
1 TTTA-AAAATTA-TGGAAATACCATTGG
17808083 TTT
1 TTT
17808086 GCAGATTTAC
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
26 4 0.15
27 22 0.81
28 1 0.04
ACGTcount: A:0.38, C:0.11, G:0.12, T:0.39
Consensus pattern (26 bp):
TTTAAAAATTATGGAAATACCATTGG
Found at i:17809264 original size:11 final size:11
Alignment explanation
Indices: 17809228--17809283 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
17809218 CACGGTATGT
17809228 ATGATATGCAC
1 ATGATATGCAC
* *
17809239 ATGACATG--T
1 ATGATATGCAC
17809248 ATGATATGCAC
1 ATGATATGCAC
*
17809259 ATGATATG--T
1 ATGATATGCAC
17809268 ATGATATGCAC
1 ATGATATGCAC
17809279 ATGAT
1 ATGAT
17809284 GTATTCATCA
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:17809283 original size:20 final size:20
Alignment explanation
Indices: 17809223--17809283 Score: 113
Period size: 20 Copynumber: 3.0 Consensus size: 20
17809213 ATAAACACGG
17809223 TATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
*
17809243 CATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
17809263 TATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
17809283 T
1 T
17809284 GTATTCATCA
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 39 1.00
ACGTcount: A:0.34, C:0.11, G:0.20, T:0.34
Consensus pattern (20 bp):
TATGTATGATATGCACATGA
Found at i:17809389 original size:24 final size:23
Alignment explanation
Indices: 17809333--17809499 Score: 228
Period size: 24 Copynumber: 7.0 Consensus size: 23
17809323 GAGGAAGTGA
17809333 AAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
*
17809356 TAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
17809379 CAAAAGGGCTTATGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
*
17809403 CAAAAGGGCTTACGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
*
17809427 TAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
*
17809450 AAAAAGGGCTTTTGCCCCAGTTATT
1 -AAAAGGGCTTATGCCCCAGTTA-T
*
17809475 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
17809499 A
1 A
17809500 TGATAAAGCA
Statistics
Matches: 130, Mismatches: 9, Indels: 9
0.88 0.06 0.06
Matches are distributed among these distances:
23 43 0.33
24 76 0.58
25 11 0.08
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.26
Consensus pattern (23 bp):
AAAAGGGCTTATGCCCCAGTTAT
Found at i:17809402 original size:47 final size:47
Alignment explanation
Indices: 17809333--17809499 Score: 230
Period size: 47 Copynumber: 3.5 Consensus size: 47
17809323 GAGGAAGTGA
*
17809333 AAAAGGGCTTATGCCCCAGTTAT-TAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCAGTTAT
* *
17809379 CAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTACGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCAGTTAT
* *
17809427 TAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCAGTTA-T
*
17809475 AAAAGAGGC-TAGGCCTCCAGTTATA
1 AAAAG-GGCTTATGCC-CCAGTTATA
17809500 TGATAAAGCA
Statistics
Matches: 108, Mismatches: 8, Indels: 6
0.89 0.07 0.05
Matches are distributed among these distances:
47 65 0.60
48 31 0.29
49 12 0.11
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.26
Consensus pattern (47 bp):
AAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCAGTTAT
Found at i:17809449 original size:71 final size:71
Alignment explanation
Indices: 17809333--17809498 Score: 262
Period size: 71 Copynumber: 2.3 Consensus size: 71
17809323 GAGGAAGTGA
* *
17809333 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCA
1 AAAAGGGCTTACGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCA
17809398 GTTATC
66 GTTATC
*
17809404 AAAAGGGCTTACGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTTTGCCCCA
1 AAAAGGGCTTACGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCA
*
17809469 GTTATT
66 GTTATC
*
17809475 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTACGCC-CCAGTTAT
17809499 ATGATAAAGC
Statistics
Matches: 88, Mismatches: 5, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
71 77 0.88
72 11 0.12
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.27
Consensus pattern (71 bp):
AAAAGGGCTTACGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCA
GTTATC
Found at i:17809727 original size:31 final size:31
Alignment explanation
Indices: 17809692--17809755 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
17809682 CGTTTACAAT
*
17809692 AAAGGCTTCGGCCCAGTAATATGAAATTTGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
17809723 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
17809754 AA
1 AA
17809756 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:17810596 original size:47 final size:46
Alignment explanation
Indices: 17810538--17810656 Score: 143
Period size: 47 Copynumber: 2.5 Consensus size: 46
17810528 CAAGGGCTAG
*
17810538 TGTAAGACATGTCTGGGACATGCATCAGCCATACTATGATAGCTAA
1 TGTAAGACATGTCTGGGACATGCATCAGCCATACTATGATAGCCAA
* * * *
17810584 TGTAAGACCATGTCTGGGACATGGCAGCGGCACAGA-GATGAGT-GCCAA
1 TGTAAGA-CATGTCTGGGACAT-GCATCAGC-CATACTATGA-TAGCCAA
17810632 TGTAAGACATGTCTGGGACATGCAT
1 TGTAAGACATGTCTGGGACATGCAT
17810657 TGGCCCCGAC
Statistics
Matches: 63, Mismatches: 6, Indels: 8
0.82 0.08 0.10
Matches are distributed among these distances:
46 10 0.16
47 28 0.44
48 21 0.33
49 4 0.06
ACGTcount: A:0.30, C:0.19, G:0.28, T:0.23
Consensus pattern (46 bp):
TGTAAGACATGTCTGGGACATGCATCAGCCATACTATGATAGCCAA
Found at i:17810636 original size:94 final size:93
Alignment explanation
Indices: 17810461--17810656 Score: 241
Period size: 94 Copynumber: 2.1 Consensus size: 93
17810451 GGGTGTTACA
* * * *
17810461 ACATGCTTCAGCCACATTATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACATCCA
1 ACATGCATCAGCCACACTATGAGAGCCAATGTAAGACCATGTCTGGGACATGGCAGCGACA-CCA
* *
17810526 AACAAGGGCTAGTGTAAGACATGTCTGGG
65 AACAAGGGCCAATGTAAGACATGTCTGGG
* * * *
17810555 ACATGCATCAGCCATACTATGATAGCTAATGTAAGACCATGTCTGGGACATGGCAGCGGCA-CAG
1 ACATGCATCAGCCACACTATGAGAGCCAATGTAAGACCATGTCTGGGACATGGCAGCGACACCA-
** *
17810619 AGATGAGTGCCAATGTAAGACATGTCTGGG
65 A-ACAAGGGCCAATGTAAGACATGTCTGGG
17810649 ACATGCAT
1 ACATGCAT
17810657 TGGCCCCGAC
Statistics
Matches: 87, Mismatches: 13, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
92 2 0.02
93 1 0.01
94 84 0.97
ACGTcount: A:0.31, C:0.21, G:0.27, T:0.21
Consensus pattern (93 bp):
ACATGCATCAGCCACACTATGAGAGCCAATGTAAGACCATGTCTGGGACATGGCAGCGACACCAA
ACAAGGGCCAATGTAAGACATGTCTGGG
Found at i:17810683 original size:47 final size:47
Alignment explanation
Indices: 17810538--17810683 Score: 138
Period size: 47 Copynumber: 3.1 Consensus size: 47
17810528 CAAGGGCTAG
* * * *
17810538 TGTAAGACATGTCTGGGACATGCATCAG-CCATACTA-TGATAGCTAA
1 TGTAAGACATGTCTGGGACATGCATCGGCCCAGAC-AGAGATAGCCAA
* * *
17810584 TGTAAGACCATGTCTGGGACATGGCAGCGGCACAGAGATGAG-T-GCCAA
1 TGTAAGA-CATGTCTGGGACAT-GCATCGGCCCAGACA-GAGATAGCCAA
* * *
17810632 TGTAAGACATGTCTGGGACATGCATTGGCCCCGACAGAGATAGCCAG
1 TGTAAGACATGTCTGGGACATGCATCGGCCCAGACAGAGATAGCCAA
17810679 TGTAA
1 TGTAA
17810684 AACGTGCCTG
Statistics
Matches: 80, Mismatches: 13, Indels: 13
0.75 0.12 0.12
Matches are distributed among these distances:
45 3 0.04
46 18 0.22
47 37 0.46
48 17 0.21
49 4 0.05
50 1 0.01
ACGTcount: A:0.30, C:0.21, G:0.28, T:0.21
Consensus pattern (47 bp):
TGTAAGACATGTCTGGGACATGCATCGGCCCAGACAGAGATAGCCAA
Found at i:17819563 original size:33 final size:33
Alignment explanation
Indices: 17819518--17819607 Score: 153
Period size: 33 Copynumber: 2.7 Consensus size: 33
17819508 GTTTCAATTA
17819518 GGATTTAGCCTGGACTGGTAATCCTAATTGACT
1 GGATTTAGCCTGGACTGGTAATCCTAATTGACT
* *
17819551 GGATTTAACCTGGATTGGTAATCCTAATTGACT
1 GGATTTAGCCTGGACTGGTAATCCTAATTGACT
*
17819584 GGATTTAGCCTGGACTTGTAATCC
1 GGATTTAGCCTGGACTGGTAATCC
17819608 AAAATAAACT
Statistics
Matches: 52, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 52 1.00
ACGTcount: A:0.24, C:0.18, G:0.23, T:0.34
Consensus pattern (33 bp):
GGATTTAGCCTGGACTGGTAATCCTAATTGACT
Found at i:17826417 original size:47 final size:47
Alignment explanation
Indices: 17826365--17826486 Score: 190
Period size: 47 Copynumber: 2.6 Consensus size: 47
17826355 CATGCCTTGG
* *
17826365 CATGGTCTTACATGATATCCTTATCTTACCAAATACAATGTTCCAAA
1 CATGGTCTTACATGGTATCCTTGTCTTACCAAATACAATGTTCCAAA
* * *
17826412 CATGGTCTTACATGGTATCATTGTCTTACCAAATGCCATGTTCCAAA
1 CATGGTCTTACATGGTATCCTTGTCTTACCAAATACAATGTTCCAAA
*
17826459 CATGGTCTTTCATGGTATCCTTGTCTTA
1 CATGGTCTTACATGGTATCCTTGTCTTA
17826487 GTGCCAATGT
Statistics
Matches: 68, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 68 1.00
ACGTcount: A:0.27, C:0.23, G:0.13, T:0.37
Consensus pattern (47 bp):
CATGGTCTTACATGGTATCCTTGTCTTACCAAATACAATGTTCCAAA
Found at i:17831648 original size:40 final size:40
Alignment explanation
Indices: 17831611--17831835 Score: 269
Period size: 40 Copynumber: 5.7 Consensus size: 40
17831601 GCTACTCGTT
* *
17831611 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
17831651 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
17831691 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * * *
17831731 CAAATGTCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** * * * *
17831770 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
* *
17831811 CAAA-GCCTTCAGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
17831836 CATCATTCAA
Statistics
Matches: 165, Mismatches: 15, Indels: 10
0.87 0.08 0.05
Matches are distributed among these distances:
38 2 0.01
39 32 0.19
40 118 0.72
41 13 0.08
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:17831795 original size:119 final size:120
Alignment explanation
Indices: 17831611--17831835 Score: 287
Period size: 119 Copynumber: 1.9 Consensus size: 120
17831601 GCTACTCGTT
*
17831611 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
* * *
17831676 ATTTAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
66 ATATAGTAACTTAGCACAAA-GCCTTCAGGACTTAACCCGGATTTAGTAACTCGCA
* * * **
17831731 CAAATGTCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCC
1 CAAATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
* * *
17831793 GGATATGGTCACTTAGCACAAAGCCTTCAGGACTTAGCCCGGA
64 GGATATAGTAACTTAGCACAAAGCCTTCAGGACTTAACCCGGA
17831836 CATCATTCAA
Statistics
Matches: 90, Mismatches: 12, Indels: 7
0.83 0.11 0.06
Matches are distributed among these distances:
118 4 0.04
119 65 0.72
120 21 0.23
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (120 bp):
CAAATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
ATATAGTAACTTAGCACAAAGCCTTCAGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:17839037 original size:79 final size:81
Alignment explanation
Indices: 17838867--17839051 Score: 218
Period size: 79 Copynumber: 2.3 Consensus size: 81
17838857 GCTACTCGTT
* *
17838867 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
* *
17838931 GATTTAGTAACTCGCA
66 GATATAGTAACTAGCA
* * **
17838947 CAAATGTCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
* *
17839009 GGATATGGTCACTTAGCA
65 GGATATAGTAAC-TAGCA
*
17839027 CAAA-GCCTTCGGGACTTTGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
17839052 CATCATTCAA
Statistics
Matches: 89, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.61
80 32 0.36
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
GATATAGTAACTAGCA
Found at i:17839051 original size:40 final size:40
Alignment explanation
Indices: 17838848--17839051 Score: 220
Period size: 40 Copynumber: 5.1 Consensus size: 40
17838838 CGAAATTTAA
** *
17838848 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
17838888 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
17838928 CCGGATTTAGTAACTCGCACAAATGTCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
17838967 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * * *
17839007 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTTGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
17839047 CCGGA
1 CCGGA
17839052 CATCATTCAA
Statistics
Matches: 138, Mismatches: 19, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
38 2 0.01
39 32 0.23
40 92 0.67
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:17842031 original size:54 final size:54
Alignment explanation
Indices: 17841840--17842054 Score: 204
Period size: 54 Copynumber: 4.0 Consensus size: 54
17841830 TTCCTTTTTA
* * * * * *
17841840 AACTTACCATTGCCATGTCTTGACATAGTCTTACGTGGTATCCTTAACTTAT-G
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGATATCCTTACCTTATCG
* * ** * *
17841893 AACTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTA-CA
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGATATCC-TTACCTTATCG
* * * *
17841946 ATATTTCATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTACCTTATCG
1 A-ACTT-ACCAATGCCATGCCTTGACATGGTCTTACATGATATCCTTACCTTATCG
* *
17842002 AACTTATCAATGCCATGCCTTTG-CATGGTCTTACATGATATCCTTATCTTATC
1 AACTTACCAATGCCATGCC-TTGACATGGTCTTACATGATATCCTTACCTTATC
17842055 AAATGCCATG
Statistics
Matches: 131, Mismatches: 24, Indels: 13
0.78 0.14 0.08
Matches are distributed among these distances:
52 2 0.02
53 40 0.31
54 43 0.33
55 42 0.32
56 4 0.03
ACGTcount: A:0.24, C:0.25, G:0.14, T:0.37
Consensus pattern (54 bp):
AACTTACCAATGCCATGCCTTGACATGGTCTTACATGATATCCTTACCTTATCG
Found at i:17842080 original size:47 final size:47
Alignment explanation
Indices: 17842025--17842146 Score: 208
Period size: 47 Copynumber: 2.6 Consensus size: 47
17842015 CATGCCTTTG
* * * *
17842025 CATGGTCTTACATGATATCCTTATCTTATCAAATGCCATGTTCCAAA
1 CATGGTCTTACATGGTATCCTTGTCTTACCAAATACCATGTTCCAAA
17842072 CATGGTCTTACATGGTATCCTTGTCTTACCAAATACCATGTTCCAAA
1 CATGGTCTTACATGGTATCCTTGTCTTACCAAATACCATGTTCCAAA
17842119 CATGGTCTTACATGGTATCCTTGTCTTA
1 CATGGTCTTACATGGTATCCTTGTCTTA
17842147 GTACCAATGG
Statistics
Matches: 71, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 71 1.00
ACGTcount: A:0.26, C:0.24, G:0.13, T:0.37
Consensus pattern (47 bp):
CATGGTCTTACATGGTATCCTTGTCTTACCAAATACCATGTTCCAAA
Found at i:17847695 original size:33 final size:33
Alignment explanation
Indices: 17847650--17847713 Score: 119
Period size: 33 Copynumber: 1.9 Consensus size: 33
17847640 TTCAATTAGG
*
17847650 ATTGACTGGATTTAGCCTGGACTGGTAATCCTA
1 ATTGACTAGATTTAGCCTGGACTGGTAATCCTA
17847683 ATTGACTAGATTTAGCCTGGACTGGTAATCC
1 ATTGACTAGATTTAGCCTGGACTGGTAATCC
17847714 AGAATAAACT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.25, C:0.19, G:0.23, T:0.33
Consensus pattern (33 bp):
ATTGACTAGATTTAGCCTGGACTGGTAATCCTA
Found at i:17861850 original size:43 final size:41
Alignment explanation
Indices: 17861768--17861885 Score: 121
Period size: 43 Copynumber: 2.8 Consensus size: 41
17861758 AAAAAGCTCG
***
17861768 TACAATGCCAATGTCCCAGAC-GTGGTCTTACATGTAATCAAA
1 TACAATGCC-ATGTCCCAGACAG-GGTCTTACACAAAATCAAA
*
17861810 TATCAATGCCACTGTCCCAGACAGGGTCTTACACAAAATCATA
1 TA-CAATGCCA-TGTCCCAGACAGGGTCTTACACAAAATCAAA
* * *
17861853 TACGATGCCGATGTCCTAGACATGGTCTTACAC
1 TACAATGCC-ATGTCCCAGACAGGGTCTTACAC
17861886 GTAAATCTCA
Statistics
Matches: 65, Mismatches: 7, Indels: 8
0.81 0.09 0.10
Matches are distributed among these distances:
42 29 0.45
43 35 0.54
44 1 0.02
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.25
Consensus pattern (41 bp):
TACAATGCCATGTCCCAGACAGGGTCTTACACAAAATCAAA
Found at i:17873646 original size:45 final size:45
Alignment explanation
Indices: 17873547--17873708 Score: 204
Period size: 45 Copynumber: 3.6 Consensus size: 45
17873537 TCGACATTTT
** * *
17873547 GCCTGCTAGGCTCGGA-GCCC-AATA-TCATTTCACCAGCATTATA
1 GCCTGCTAGGCTCAAAGGCCCGAATAGT-ATCTCACCGGCATTATA
* *
17873590 GCCTGCTAGGCTCAAAGGCCCGAATAGTATCTCATCGGCATTATG
1 GCCTGCTAGGCTCAAAGGCCCGAATAGTATCTCACCGGCATTATA
*
17873635 GCCTACTAGGCTCAAAGGCCCGAATAGTATCTCACCGGCATTATA
1 GCCTGCTAGGCTCAAAGGCCCGAATAGTATCTCACCGGCATTATA
* * *
17873680 ACCTGCTAGTCTTAAAGGCCCGAATAGTA
1 GCCTGCTAGGCTCAAAGGCCCGAATAGTA
17873709 CTGTATGATA
Statistics
Matches: 103, Mismatches: 13, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
43 14 0.14
44 4 0.04
45 84 0.82
46 1 0.01
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (45 bp):
GCCTGCTAGGCTCAAAGGCCCGAATAGTATCTCACCGGCATTATA
Found at i:17874557 original size:12 final size:13
Alignment explanation
Indices: 17874542--17874589 Score: 55
Period size: 12 Copynumber: 3.8 Consensus size: 13
17874532 AATAATAAGG
17874542 GAAAAT-TTAACC
1 GAAAATATTAACC
**
17874554 GAAAATATTAAGA
1 GAAAATATTAACC
*
17874567 GCAAAT-TTAACC
1 GAAAATATTAACC
17874579 GAAAATATTAA
1 GAAAATATTAA
17874590 GAGTAAATTT
Statistics
Matches: 28, Mismatches: 6, Indels: 3
0.76 0.16 0.08
Matches are distributed among these distances:
12 15 0.54
13 13 0.46
ACGTcount: A:0.54, C:0.10, G:0.10, T:0.25
Consensus pattern (13 bp):
GAAAATATTAACC
Found at i:17874559 original size:25 final size:25
Alignment explanation
Indices: 17874531--17874616 Score: 109
Period size: 25 Copynumber: 3.4 Consensus size: 25
17874521 ACTTATTCGG
* *
17874531 AAATAATAAGGGAAAATTTAACCGA
1 AAATATTAAGAGAAAATTTAACCGA
*
17874556 AAATATTAAGAGCAAATTTAACCGA
1 AAATATTAAGAGAAAATTTAACCGA
* * *
17874581 AAATATTAAGAGTAAATTTAACTGG
1 AAATATTAAGAGAAAATTTAACCGA
*
17874606 AATTATTAAGA
1 AAATATTAAGA
17874617 ACAAATTAAC
Statistics
Matches: 54, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 54 1.00
ACGTcount: A:0.52, C:0.07, G:0.14, T:0.27
Consensus pattern (25 bp):
AAATATTAAGAGAAAATTTAACCGA
Found at i:17874622 original size:25 final size:25
Alignment explanation
Indices: 17874544--17874623 Score: 115
Period size: 25 Copynumber: 3.2 Consensus size: 25
17874534 TAATAAGGGA
17874544 AAATTTAACCGAAAATATTAAGAGC
1 AAATTTAACCGAAAATATTAAGAGC
*
17874569 AAATTTAACCGAAAATATTAAGAGT
1 AAATTTAACCGAAAATATTAAGAGC
* * * *
17874594 AAATTTAACTGGAATTATTAAGAAC
1 AAATTTAACCGAAAATATTAAGAGC
17874619 AAATT
1 AAATT
17874624 AACAAGCTTA
Statistics
Matches: 49, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 49 1.00
ACGTcount: A:0.51, C:0.09, G:0.11, T:0.29
Consensus pattern (25 bp):
AAATTTAACCGAAAATATTAAGAGC
Found at i:17886076 original size:17 final size:17
Alignment explanation
Indices: 17886035--17886077 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 17
17886025 ATTTGATAAT
*
17886035 TTTGTTTTAATTATTTGA
1 TTTG-TTTAATTAGTTGA
* *
17886053 ATAGTTTAATTAGTTGA
1 TTTGTTTAATTAGTTGA
17886070 TTTGTTTA
1 TTTGTTTA
17886078 TATACCTCTG
Statistics
Matches: 20, Mismatches: 5, Indels: 1
0.77 0.19 0.04
Matches are distributed among these distances:
17 18 0.90
18 2 0.10
ACGTcount: A:0.26, C:0.00, G:0.14, T:0.60
Consensus pattern (17 bp):
TTTGTTTAATTAGTTGA
Found at i:17887376 original size:43 final size:43
Alignment explanation
Indices: 17887310--17887475 Score: 178
Period size: 43 Copynumber: 3.9 Consensus size: 43
17887300 AGCTCACACA
* * *
17887310 ATGCCAATGTCCAAGAC-GTGGTCTTACATGTAATCAAATATCG
1 ATGCCAATGTCCCAGACAG-GGTCTTACACGAAATCAAATATCG
*
17887353 ATGCCATTGTCCCAGACAGGGTCTTACACGAAATCAAATA-CG
1 ATGCCAATGTCCCAGACAGGGTCTTACACGAAATCAAATATCG
* * * *
17887395 AT-ACGATGTCCCAGACATGGTCTTACACGTAAATCATAA-GTCG
1 ATGCCAATGTCCCAGACAGGGTCTTACACG-AAATCA-AATATCG
* * *
17887438 ATGTCAACGTCCCAGACATGGTCTTACACGAAATCAAA
1 ATGCCAATGTCCCAGACAGGGTCTTACACGAAATCAAA
17887476 AATTAAGAAT
Statistics
Matches: 106, Mismatches: 12, Indels: 11
0.82 0.09 0.09
Matches are distributed among these distances:
41 23 0.22
42 12 0.11
43 46 0.43
44 25 0.24
ACGTcount: A:0.34, C:0.24, G:0.18, T:0.24
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACAGGGTCTTACACGAAATCAAATATCG
Found at i:17887461 original size:85 final size:84
Alignment explanation
Indices: 17887316--17887475 Score: 223
Period size: 85 Copynumber: 1.9 Consensus size: 84
17887306 CACAATGCCA
* * **
17887316 ATGTCCAAGACGTGGTCTTACATGTAATCAAATATCGATGCCATTGTCCCAGACAGGGTCTTACA
1 ATGTCCAAGACATGGTCTTACACGTAATCAAATATCGATGCCAACGTCCCAGACAGGGTCTTACA
17887381 CGAAATCAAATACGATACG
66 CGAAATCAAATACGATACG
* * * *
17887400 ATGTCCCAGACATGGTCTTACACGTAAATCATAA-GTCGATGTCAACGTCCCAGACATGGTCTTA
1 ATGTCCAAGACATGGTCTTACACGT-AATCA-AATATCGATGCCAACGTCCCAGACAGGGTCTTA
17887464 CACGAAATCAAA
64 CACGAAATCAAA
17887476 AATTAAGAAT
Statistics
Matches: 66, Mismatches: 8, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
84 22 0.33
85 42 0.64
86 2 0.03
ACGTcount: A:0.34, C:0.24, G:0.18, T:0.24
Consensus pattern (84 bp):
ATGTCCAAGACATGGTCTTACACGTAATCAAATATCGATGCCAACGTCCCAGACAGGGTCTTACA
CGAAATCAAATACGATACG
Found at i:17892833 original size:24 final size:23
Alignment explanation
Indices: 17892800--17892857 Score: 66
Period size: 24 Copynumber: 2.5 Consensus size: 23
17892790 AGTTGAAAAG
17892800 TATAA-AATAAAATAAATAATGATA
1 TATAATAATAAAAT-AAT-ATGATA
*
17892824 -ATAATAATAAAATGATATGATA
1 TATAATAATAAAATAATATGATA
17892846 TATATATAATAA
1 TATA-ATAATAA
17892858 TGTTTGATTA
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
22 6 0.20
23 9 0.30
24 15 0.50
ACGTcount: A:0.62, C:0.00, G:0.05, T:0.33
Consensus pattern (23 bp):
TATAATAATAAAATAATATGATA
Found at i:17893275 original size:48 final size:48
Alignment explanation
Indices: 17893128--17893284 Score: 264
Period size: 49 Copynumber: 3.2 Consensus size: 48
17893118 CTTACTTTGA
17893128 GAATGTGAAA--GTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
1 GAATGTGAAAGTGTGTATATATGTGAT-AGGCCTAATGGCCGATGTGAT
*
17893175 GAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCGATGTGAT
1 GAATGTGAAAGTGTGTATATATGTGATA-GGCCTAATGGCCGATGTGAT
17893224 GAATGTGAAAGTGTGTATATATGTGATAGGCCTAATGGCCGATGTGAT
1 GAATGTGAAAGTGTGTATATATGTGATAGGCCTAATGGCCGATGTGAT
17893272 GAATGTGATAAGT
1 GAATGTGA-AAGT
17893285 CCCGAAGGGC
Statistics
Matches: 104, Mismatches: 2, Indels: 6
0.93 0.02 0.05
Matches are distributed among these distances:
47 10 0.10
48 29 0.28
49 65 0.62
ACGTcount: A:0.31, C:0.08, G:0.31, T:0.31
Consensus pattern (48 bp):
GAATGTGAAAGTGTGTATATATGTGATAGGCCTAATGGCCGATGTGAT
Found at i:17893460 original size:37 final size:37
Alignment explanation
Indices: 17893402--17893480 Score: 104
Period size: 37 Copynumber: 2.1 Consensus size: 37
17893392 CTGAGCTCCA
* * * *
17893402 AAGACCCGATGACTACGTGTGGGGATTTTGTACGGGT
1 AAGACCCGATAACTACATGTGGAGATTATGTACGGGT
* *
17893439 AAGACCCGATAACTTCATGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACATGTGGAGATTATGTACGGGT
17893476 AAGAC
1 AAGAC
17893481 TTCGTAATAA
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.27, C:0.18, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACATGTGGAGATTATGTACGGGT
Found at i:17895392 original size:43 final size:43
Alignment explanation
Indices: 17895344--17895446 Score: 197
Period size: 43 Copynumber: 2.4 Consensus size: 43
17895334 TTGGTTTTCA
17895344 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
*
17895387 GCACTAAGTGTTCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
17895430 GCACTAAGTGTGCGGGC
1 GCACTAAGTGTGCGGGC
17895447 TTGAAATGCA
Statistics
Matches: 58, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
43 58 1.00
ACGTcount: A:0.22, C:0.16, G:0.35, T:0.27
Consensus pattern (43 bp):
GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
Found at i:17895463 original size:29 final size:29
Alignment explanation
Indices: 17895428--17895501 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
17895418 GTTGTGAGAT
* *
17895428 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
17895457 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
17895486 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
17895502 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:17896100 original size:119 final size:119
Alignment explanation
Indices: 17895812--17896161 Score: 404
Period size: 119 Copynumber: 2.9 Consensus size: 119
17895802 TCGAACGATG
* *
17895812 TCCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAG-GCA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCT-AGTGA-TATATCCGG-CTAAGATCCGAAGAGCA
* * * *
17895874 TTGGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGCGATGTA
63 TTCGTGCTAGTGA-TATATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGCGATGTA
* * *
17895932 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTTCCGAAGAGCATT
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCC-GGCTAAGATCCGAAGAGCATT
* ** * *
17895997 CGTGCTAGTGATGTATCCGGGCTAAGTTTCGAAGAGCATTCGTGCTAG-TATGTA
65 CGTGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGCGATGTA
* * *
17896051 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCGTGCTAA-ACCCCAAAGAGCAT
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCG-GCTAAGA-TCCGAAGAGCAT
* * * * *
17896115 TCGTGCTGGTGTTATATCCGGGCTAGGTCCCGAAGAGTAATCATGCT
64 TCGTGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCATGCT
17896162 GGTGACGTGT
Statistics
Matches: 195, Mismatches: 29, Indels: 13
0.82 0.12 0.05
Matches are distributed among these distances:
118 1 0.01
119 98 0.50
120 68 0.35
121 22 0.11
122 6 0.03
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (119 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGCTAAGATCCGAAGAGCATTC
GTGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGCGATGTA
Found at i:17896165 original size:40 final size:40
Alignment explanation
Indices: 17895812--17896151 Score: 384
Period size: 40 Copynumber: 8.5 Consensus size: 40
17895802 TCGAACGATG
* **
17895812 TCCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCT-AGTGA-TGTA
* * * * **
17895852 TCCGGACTAAGAT-CCGAAG-GCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGAGCATTCGTGCTAGTGA-TGTA
* *
17895892 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGCGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
*
17895932 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
*
17895972 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
**
17896012 TCCGGGCTAAGTTTCGAAGAGCATTCGTGCTAGT-ATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
* *
17896051 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
* ** * * * *
17896091 TCCGTGCTAAACCCCAAAGAGCATTCGTGCTGGTGTTATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
*
17896131 TCCGGGCTAGGTCCCGAAGAG
1 TCCGGGCTAAGTCCCGAAGAG
17896152 TAATCATGCT
Statistics
Matches: 263, Mismatches: 32, Indels: 10
0.86 0.10 0.03
Matches are distributed among these distances:
39 39 0.15
40 206 0.78
41 18 0.07
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
Found at i:17899345 original size:24 final size:23
Alignment explanation
Indices: 17899312--17899369 Score: 66
Period size: 24 Copynumber: 2.5 Consensus size: 23
17899302 AGTTGAAAAG
17899312 TATAA-AATAAAATAAATAATGATA
1 TATAATAATAAAAT-AAT-ATGATA
*
17899336 -ATAATAATAAAATGATATGATA
1 TATAATAATAAAATAATATGATA
17899358 TATATATAATAA
1 TATA-ATAATAA
17899370 TGTTTGATTA
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
22 6 0.20
23 9 0.30
24 15 0.50
ACGTcount: A:0.62, C:0.00, G:0.05, T:0.33
Consensus pattern (23 bp):
TATAATAATAAAATAATATGATA
Found at i:17899721 original size:49 final size:48
Alignment explanation
Indices: 17899640--17899797 Score: 264
Period size: 49 Copynumber: 3.2 Consensus size: 48
17899630 CTTACTTTGA
*
17899640 GAATGTGAAAG-TGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
1 GAATGTGAAAGTTGTATATATGTGATAGGGCCTAATGGCCGATGTGAT
*
17899687 GAATGTGAAAGTATATATATATGTGATAGGGCCTAATGGCCGATGTGAT
1 GAATGTGAAAGT-TGTATATATGTGATAGGGCCTAATGGCCGATGTGAT
17899736 GAATGTGAAAGTGTGTATATATGTGATAGGGCCTAATGGCCGATGTGAT
1 GAATGTGAAAGT-TGTATATATGTGATAGGGCCTAATGGCCGATGTGAT
17899785 GAATGTGATAAGT
1 GAATGTGA-AAGT
17899798 CCCGAAGGGC
Statistics
Matches: 104, Mismatches: 4, Indels: 3
0.94 0.04 0.03
Matches are distributed among these distances:
47 11 0.11
49 89 0.86
50 4 0.04
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (48 bp):
GAATGTGAAAGTTGTATATATGTGATAGGGCCTAATGGCCGATGTGAT
Found at i:17899971 original size:37 final size:37
Alignment explanation
Indices: 17899915--17899993 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
17899905 CCGAGCTCTA
* * *
17899915 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
17899952 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
17899989 AAGAC
1 AAGAC
17899994 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:17909061 original size:40 final size:40
Alignment explanation
Indices: 17909006--17909216 Score: 221
Period size: 40 Copynumber: 5.3 Consensus size: 40
17908996 TTGAATGATA
* *
17909006 TATCCGGGCTAAGTCCCGGAGGCATTTATGCTAGTGATTT
1 TATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATTT
* *
17909046 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGGTTT
1 TATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATTT
* * *
17909086 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-TA
1 TATCCGGGCTAAGACCCGAAGGCATTTATGCTAG-TGATTT
* * * *
17909126 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTA
1 TATCCGGGCTAAGACCCGAAGGCATTTATGCTAG-TGATTT
* * * * * * *
17909166 TACCCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTA
1 TATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATTT
17909206 TATCC-GGCTAA
1 TATCCGGGCTAA
17909217 ATTCCGAAGA
Statistics
Matches: 153, Mismatches: 15, Indels: 7
0.87 0.09 0.04
Matches are distributed among these distances:
39 7 0.05
40 144 0.94
41 2 0.01
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.28
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATTT
Found at i:17909144 original size:80 final size:80
Alignment explanation
Indices: 17909004--17909216 Score: 250
Period size: 80 Copynumber: 2.7 Consensus size: 80
17908994 ATTTGAATGA
* * * * * *
17909004 TATATCCGGGCTAAGTCCCGGAGGCATTTATGCTAGTGATTTTATCCGGGCTAAGTCCCGAAGGC
1 TATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATTATATCCGGGCTAAGACCCGAAGGC
* *
17909069 ATTTATGCTAGTGGT
66 ATTTATGCGAGTGGC
*
17909084 TTTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-TATATCCGGGCTAAGACCCGAAGG
1 TATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG-TGATTATATCCGGGCTAAGACCCGAAGG
* *
17909148 CATTTGTGCGAGTTGC
65 CATTTATGCGAGTGGC
* * * ** *
17909164 TATACCCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATATCC-GGCTAA
1 TATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATTATATCCGGGCTAA
17909217 ATTCCGAAGA
Statistics
Matches: 113, Mismatches: 18, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
79 8 0.07
80 102 0.90
81 3 0.03
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.29
Consensus pattern (80 bp):
TATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATTATATCCGGGCTAAGACCCGAAGGC
ATTTATGCGAGTGGC
Found at i:17915175 original size:19 final size:19
Alignment explanation
Indices: 17915147--17915196 Score: 75
Period size: 19 Copynumber: 2.7 Consensus size: 19
17915137 TTGGGCTAAA
17915147 ATGGGC-CGTGTGGGCCCC
1 ATGGGCTCGTGTGGGCCCC
*
17915165 ATGGGCTCGTGTGGGCCCT
1 ATGGGCTCGTGTGGGCCCC
*
17915184 ATGGGCTCATGTG
1 ATGGGCTCGTGTG
17915197 CCCCACATGG
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
18 6 0.21
19 23 0.79
ACGTcount: A:0.08, C:0.26, G:0.42, T:0.24
Consensus pattern (19 bp):
ATGGGCTCGTGTGGGCCCC
Found at i:17918870 original size:11 final size:11
Alignment explanation
Indices: 17918854--17918884 Score: 62
Period size: 11 Copynumber: 2.8 Consensus size: 11
17918844 CAGAATTTCA
17918854 TCACGAAATTT
1 TCACGAAATTT
17918865 TCACGAAATTT
1 TCACGAAATTT
17918876 TCACGAAAT
1 TCACGAAAT
17918885 CATATCATAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.39, C:0.19, G:0.10, T:0.32
Consensus pattern (11 bp):
TCACGAAATTT
Found at i:17921595 original size:79 final size:81
Alignment explanation
Indices: 17921459--17921643 Score: 236
Period size: 79 Copynumber: 2.3 Consensus size: 81
17921449 TTGAATGATG
*
17921459 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGCCTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGCCTAAGATCCGAAGGCATT
17921523 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
17921538 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGCCTAAGAT-CCGAAGGCA
*
17921600 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
17921618 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
17921644 AACGAGTAGC
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.63
80 33 0.36
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGCCTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:17921657 original size:40 final size:40
Alignment explanation
Indices: 17921460--17921643 Score: 216
Period size: 40 Copynumber: 4.6 Consensus size: 40
17921450 TGAATGATGT
* * * *
17921460 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
17921500 CCGGCCTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
17921540 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
17921578 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
17921619 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
17921644 AACGAGTAGC
Statistics
Matches: 126, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
39 35 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:17921665 original size:79 final size:79
Alignment explanation
Indices: 17921512--17921676 Score: 210
Period size: 79 Copynumber: 2.1 Consensus size: 79
17921502 GGCCTAAGAT
* **
17921512 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
17921577 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
17921591 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
17921654 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
17921670 CCGAAGG
1 CCGAAGG
17921677 TACGTGATTT
Statistics
Matches: 75, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.64
80 25 0.33
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:17929522 original size:11 final size:11
Alignment explanation
Indices: 17929506--17929536 Score: 62
Period size: 11 Copynumber: 2.8 Consensus size: 11
17929496 CAGAATTTCA
17929506 TCACGAAATTT
1 TCACGAAATTT
17929517 TCACGAAATTT
1 TCACGAAATTT
17929528 TCACGAAAT
1 TCACGAAAT
17929537 CATATCATAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.39, C:0.19, G:0.10, T:0.32
Consensus pattern (11 bp):
TCACGAAATTT
Found at i:17942580 original size:41 final size:41
Alignment explanation
Indices: 17942493--17942799 Score: 287
Period size: 41 Copynumber: 7.5 Consensus size: 41
17942483 GATTTTCAAT
* * * *
17942493 AGGGGTACGTATGTGCAATTTAGAGGGTACTGAAGTACAAAT
1 AGGGGCACGTATGTGCAATTCAG-GGGTACCGAAGTACAAAC
* *
17942535 AGGGGCACGTATATGCAATTCAGCGGTACCGAAGTACAAAC
1 AGGGGCACGTATGTGCAATTCAGGGGTACCGAAGTACAAAC
* * * * *
17942576 AGGGGTACGTATGTGCAATTCAAGGGTACCAAAGTAGAAAT
1 AGGGGCACGTATGTGCAATTCAGGGGTACCGAAGTACAAAC
* * * * * *
17942617 AGGAGTACGTGTGTGTAATTTAGGGGTACCAAAGTACAAAC
1 AGGGGCACGTATGTGCAATTCAGGGGTACCGAAGTACAAAC
* * * *
17942658 AGGGGCACGTATG-GTCATTTCA-CGGTACCAAAGAACAAAC
1 AGGGGCACGTATGTG-CAATTCAGGGGTACCGAAGTACAAAC
* ** * ** *
17942698 AGGGGAAAATATGTGCAATTCTGGGGTATTGAAGTACTAAC
1 AGGGGCACGTATGTGCAATTCAGGGGTACCGAAGTACAAAC
* * * *
17942739 A-GGGCACGCATGTGCAATTTAGGAGTACCGAAGTACAAAT
1 AGGGGCACGTATGTGCAATTCAGGGGTACCGAAGTACAAAC
17942779 AGGGGCACGTATGTGCAATTC
1 AGGGGCACGTATGTGCAATTC
17942800 GTCATTTTTC
Statistics
Matches: 209, Mismatches: 52, Indels: 9
0.77 0.19 0.03
Matches are distributed among these distances:
40 61 0.29
41 128 0.61
42 20 0.10
ACGTcount: A:0.34, C:0.15, G:0.29, T:0.22
Consensus pattern (41 bp):
AGGGGCACGTATGTGCAATTCAGGGGTACCGAAGTACAAAC
Found at i:17942645 original size:82 final size:83
Alignment explanation
Indices: 17942493--17942799 Score: 248
Period size: 81 Copynumber: 3.8 Consensus size: 83
17942483 GATTTTCAAT
* ** *
17942493 AGGGGTACGTATGTGCAATTTAGAGGGTACTGAAGTACAAATAGGGGCACGTATATGCAATTCAG
1 AGGGGTACGTATGTGCAATTCAGAGGGTACCAAAGTACAAATAGGAGCACGTATATGCAATTCAG
*
17942558 CGGTACCGAAGTACAAAC
66 CGGTACCAAAGTACAAAC
* * * * * *
17942576 AGGGGTACGTATGTGCAATTCA-AGGGTACCAAAGTAGAAATAGGAGTACGTGTGTGTAATTTAG
1 AGGGGTACGTATGTGCAATTCAGAGGGTACCAAAGTACAAATAGGAGCACGTATATGCAATTCAG
*
17942640 GGGTACCAAAGTACAAAC
66 CGGTACCAAAGTACAAAC
* * * * * * * ** * *
17942658 AGGGGCACGTATG-GTCATTTC--ACGGTACCAAAGAACAAACAGGGGAAAATATGTGCAATTCT
1 AGGGGTACGTATGTG-CAATTCAGAGGGTACCAAAGTACAAATAGGAGCACGTATATGCAATTCA
* *** *
17942720 GGGGTATTGAAGTACTAAC
65 GCGGTACCAAAGTACAAAC
* * * * * * *
17942739 A-GGGCACGCATGTGCAATTTAG-GAGTACCGAAGTACAAATAGGGGCACGTATGTGCAATTC
1 AGGGGTACGTATGTGCAATTCAGAGGGTACCAAAGTACAAATAGGAGCACGTATATGCAATTC
17942800 GTCATTTTTC
Statistics
Matches: 179, Mismatches: 41, Indels: 10
0.78 0.18 0.04
Matches are distributed among these distances:
80 14 0.08
81 78 0.44
82 66 0.37
83 21 0.12
ACGTcount: A:0.34, C:0.15, G:0.29, T:0.22
Consensus pattern (83 bp):
AGGGGTACGTATGTGCAATTCAGAGGGTACCAAAGTACAAATAGGAGCACGTATATGCAATTCAG
CGGTACCAAAGTACAAAC
Found at i:17946103 original size:18 final size:19
Alignment explanation
Indices: 17946043--17946104 Score: 56
Period size: 18 Copynumber: 3.2 Consensus size: 19
17946033 AATGAAAGAA
*
17946043 AAAAATGAGAGTGAGAGAAAG
1 AAAAATGAGA-T-TGAGAAAG
**
17946064 AAAAATGAGATTGAGATTG
1 AAAAATGAGATTGAGAAAG
17946083 AAAAA-GA-ATGTGAGAAAG
1 AAAAATGAGAT-TGAGAAAG
17946101 AAAA
1 AAAA
17946105 GAAAATTGCG
Statistics
Matches: 35, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
17 2 0.06
18 12 0.34
19 10 0.29
20 1 0.03
21 10 0.29
ACGTcount: A:0.58, C:0.00, G:0.27, T:0.15
Consensus pattern (19 bp):
AAAAATGAGATTGAGAAAG
Found at i:17953333 original size:74 final size:75
Alignment explanation
Indices: 17953212--17953364 Score: 290
Period size: 74 Copynumber: 2.1 Consensus size: 75
17953202 TTTCACAAGA
*
17953212 ATTTAAATATCACACAATATAGAATTCTTTTGCTTCCCTTGTTTCTTTCATGTGAAAATAGACTC
1 ATTTAAATATCACACAATATAGAATTCTTTTGCTTCCCCTGTTTCTTTCATGTGAAAATAGACTC
17953277 ATTAAGC-TT
66 ATTAAGCTTT
17953286 ATTTAAATATCACACAATATAGAATTCTTTTGCTTCCCCTGTTTCTTTCATGTGAAAATAGACTC
1 ATTTAAATATCACACAATATAGAATTCTTTTGCTTCCCCTGTTTCTTTCATGTGAAAATAGACTC
17953351 ATTAAGCTTT
66 ATTAAGCTTT
17953361 ATTT
1 ATTT
17953365 TCATATATCA
Statistics
Matches: 77, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
74 71 0.92
75 6 0.08
ACGTcount: A:0.31, C:0.18, G:0.09, T:0.42
Consensus pattern (75 bp):
ATTTAAATATCACACAATATAGAATTCTTTTGCTTCCCCTGTTTCTTTCATGTGAAAATAGACTC
ATTAAGCTTT
Found at i:17953748 original size:49 final size:49
Alignment explanation
Indices: 17953682--17953919 Score: 296
Period size: 49 Copynumber: 4.8 Consensus size: 49
17953672 TAGCCAAAGC
* * * * *
17953682 TATCTGGTACGCATAGTAGCCTGCACATAGTACTACACATGCGACCAAT
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
* *
17953731 TATCCGGTACACGTAGTAGCTTGCACTTAGTACTACACACGTGACCAAT
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
*
17953780 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAAC
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACC-AAT
* * * * * *
17953830 CATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACATGATCACAGT
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGA-C-CAAT
* * *
17953881 TTTCGGGTACGCATAGTAGCCTGCACTTAGTACTACACA
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACA
17953920 TGCGACCTCA
Statistics
Matches: 163, Mismatches: 23, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
49 86 0.53
50 41 0.25
51 35 0.21
52 1 0.01
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.26
Consensus pattern (49 bp):
TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
Found at i:17953927 original size:101 final size:99
Alignment explanation
Indices: 17953682--17953927 Score: 341
Period size: 101 Copynumber: 2.5 Consensus size: 99
17953672 TAGCCAAAGC
* * ** *
17953682 TATCTGGTACGCATAGTAGCCTGCACATAGTACTACACATGCGACC-AATTATCCGGTACACGTA
1 TATCCGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTAACCATCCGATACACGTA
* *
17953746 GTAGCTTGCACTTAGTACTACACACGTGACCAAT
66 GTAGCCTGCACTTAGTACTACACACATGACCAAT
* * * *
17953780 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACGTA
1 TATCCGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTAACCATCCGATACACGTA
*
17953845 GTAGCCTGCACTTAGTACTACACACATGATCACAGT
66 GTAGCCTGCACTTAGTACTACACACATGA-C-CAAT
* *
17953881 TTTCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCT
1 TATCCGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCT
17953928 CACAATAGAT
Statistics
Matches: 128, Mismatches: 17, Indels: 3
0.86 0.11 0.02
Matches are distributed among these distances:
98 41 0.32
99 41 0.32
100 1 0.01
101 45 0.35
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.26
Consensus pattern (99 bp):
TATCCGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTAACCATCCGATACACGTA
GTAGCCTGCACTTAGTACTACACACATGACCAAT
Found at i:17959288 original size:71 final size:67
Alignment explanation
Indices: 17959211--17959352 Score: 194
Period size: 67 Copynumber: 2.1 Consensus size: 67
17959201 TCACCAGATA
* * * *
17959211 CAGATATTGTGGCTAGGCCACCAGAACAGATATATATATGTGGCGAAGCCACCAGATTGCAGCGA
1 CAGATATTGTGACGAAGCCACCAGAACAG----ATATATGTGGCGAAGCCACCAGATTGCAGCAA
17959276 GGCTGC
62 GGCTGC
* *
17959282 CAGATATTGTGACGAAGTCACCAGAACAGATATATGTGGCGAGGCCACCAGATTGCAGCAAGGCT
1 CAGATATTGTGACGAAGCCACCAGAACAGATATATGTGGCGAAGCCACCAGATTGCAGCAAGGCT
17959347 GC
66 GC
17959349 CAGA
1 CAGA
17959353 ATGCTTCCTC
Statistics
Matches: 65, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
67 40 0.62
71 25 0.38
ACGTcount: A:0.31, C:0.23, G:0.28, T:0.18
Consensus pattern (67 bp):
CAGATATTGTGACGAAGCCACCAGAACAGATATATGTGGCGAAGCCACCAGATTGCAGCAAGGCT
GC
Found at i:17959330 original size:27 final size:26
Alignment explanation
Indices: 17959282--17959333 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
17959272 GCGAGGCTGC
*
17959282 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
17959308 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
17959334 TTGCAGCAAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:17961292 original size:53 final size:54
Alignment explanation
Indices: 17961204--17961419 Score: 231
Period size: 55 Copynumber: 4.0 Consensus size: 54
17961194 TATGTGGTAT
* * * * * *
17961204 CCTTTTGATACTTACCATTGCCATGTCTCGACATGGTCTAACATGGTATCCTTG
1 CCTTATGAAACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTG
* * *
17961258 CCTTATG-AACTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTG
1 CCTTATGAAACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCC-TTG
** * *
17961311 CCTTATAGAAACTTATTAATGCCATGTCTTGACATGGTCTTACATGATATCCTTG
1 CCTTAT-GAAACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTG
** *
17961366 CCTTA-GAAACCTTACCAATTGTGATGCCTTGGCATGGTCTTACATGGTATCCTT
1 CCTTATGAAA-CTTACCAA-TGCCATGCCTTGACATGGTCTTACATGGTATCCTT
17961420 AAACCCTAAT
Statistics
Matches: 133, Mismatches: 23, Indels: 11
0.80 0.14 0.07
Matches are distributed among these distances:
52 2 0.02
53 45 0.34
54 13 0.10
55 71 0.53
56 2 0.02
ACGTcount: A:0.23, C:0.25, G:0.18, T:0.35
Consensus pattern (54 bp):
CCTTATGAAACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTG
Found at i:17964662 original size:40 final size:40
Alignment explanation
Indices: 17964556--17964779 Score: 339
Period size: 40 Copynumber: 5.7 Consensus size: 40
17964546 CTAACGGGGT
17964556 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
17964596 TAAGTCCCGAA-GCATTTGTGCGAGTTACTAATTCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
17964635 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
*
17964675 TAAGTCCCGAAGGCATTTGTGGGAGTTACT-ATATCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-TCCGGGC
* * *
17964715 TAAGTCCCGAAGGCATTTGTGCTAGTGAC-CATATCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-TCCGGGC
* * *
17964755 TAAGACCCGACGGC-CTTGTGCGAGT
1 TAAGTCCCGAAGGCATTTGTGCGAGT
17964780 GGTTATATCC
Statistics
Matches: 173, Mismatches: 8, Indels: 7
0.92 0.04 0.04
Matches are distributed among these distances:
39 50 0.29
40 123 0.71
ACGTcount: A:0.22, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
Found at i:17964791 original size:119 final size:118
Alignment explanation
Indices: 17964556--17964780 Score: 321
Period size: 119 Copynumber: 1.9 Consensus size: 118
17964546 CTAACGGGGT
17964556 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGTCCCGAAGCATTTGTGCGAGT
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGTCCCGAAGCATTTGTGCGAGT
* * * * *
17964621 TACTAATTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
66 GACCAATTCCGGGCTAAGACCCGAAGGCACTTGTGCGAGTGACTAATTCC-GGC
* *
17964675 TAAGTCCCGAAGGCATTTGTGGGAGTTACT-ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-TCCGGGCTAAGTCCCGAA-GCATTTGTGCGA
*
17964739 GTGACC-ATATCCGGGCTAAGACCCGACGGC-CTTGTGCGAGTG
64 GTGACCAAT-TCCGGGCTAAGACCCGAAGGCACTTGTGCGAGTG
17964781 GTTATATCCG
Statistics
Matches: 95, Mismatches: 8, Indels: 6
0.87 0.07 0.06
Matches are distributed among these distances:
118 2 0.02
119 59 0.62
120 34 0.36
ACGTcount: A:0.22, C:0.23, G:0.28, T:0.26
Consensus pattern (118 bp):
TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGTCCCGAAGCATTTGTGCGAGT
GACCAATTCCGGGCTAAGACCCGAAGGCACTTGTGCGAGTGACTAATTCCGGC
Found at i:17974686 original size:53 final size:54
Alignment explanation
Indices: 17974598--17974813 Score: 249
Period size: 55 Copynumber: 4.0 Consensus size: 54
17974588 TATGTGGTAT
* * * *
17974598 CCTTTTGAAACTTACCATTGCCATGTCTCGACATGGTCTTACATGGTATCCTTG
1 CCTTATGAAACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTG
* * *
17974652 CCTTATG-AACTTACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CATTTG
1 CCTTATGAAACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATC-CTTG
* * * *
17974705 CCTTATAGAAACTTATCAATGCCACGTCTTGACATGGTCTTACATGATATCCTTG
1 CCTTAT-GAAACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTG
* * *
17974760 CCTTA-GAAACCTTATCCATTGCAATGCCTTGGCATGGTCTTACATGGTATCCTT
1 CCTTATGAAA-CTTA-CCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTT
17974814 AAACCCTAAT
Statistics
Matches: 135, Mismatches: 21, Indels: 11
0.81 0.13 0.07
Matches are distributed among these distances:
52 1 0.01
53 48 0.36
54 11 0.08
55 74 0.55
56 1 0.01
ACGTcount: A:0.23, C:0.25, G:0.17, T:0.35
Consensus pattern (54 bp):
CCTTATGAAACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTG
Found at i:17974743 original size:108 final size:110
Alignment explanation
Indices: 17974604--17974806 Score: 313
Period size: 108 Copynumber: 1.9 Consensus size: 110
17974594 GTATCCTTTT
* * *
17974604 GAAACTTACCATTGCCATGTCTCGACATGGTCTTACATGGTATCCTTGCCTTATG-AA-CTTA-C
1 GAAACTTACCAATGCCACGTCTCGACATGGTCTTACATGATATCCTTGCCTTA-GAAACCTTATC
*
17974666 CAATGCCATGCCTTGGCATGGTCTTACATGGGACATTTGCCTTATA
65 CAATGCAATGCCTTGGCATGGTCTTACATGGGACATTTGCCTTATA
* *
17974712 GAAACTTATCAATGCCACGTCTTGACATGGTCTTACATGATATCCTTGCCTTAGAAACCTTATCC
1 GAAACTTACCAATGCCACGTCTCGACATGGTCTTACATGATATCCTTGCCTTAGAAACCTTATCC
*
17974777 ATTGCAATGCCTTGGCATGGTCTTACATGG
66 AATGCAATGCCTTGGCATGGTCTTACATGG
17974807 TATCCTTAAA
Statistics
Matches: 85, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
107 1 0.01
108 50 0.59
109 4 0.05
110 30 0.35
ACGTcount: A:0.24, C:0.25, G:0.18, T:0.33
Consensus pattern (110 bp):
GAAACTTACCAATGCCACGTCTCGACATGGTCTTACATGATATCCTTGCCTTAGAAACCTTATCC
AATGCAATGCCTTGGCATGGTCTTACATGGGACATTTGCCTTATA
Found at i:17976230 original size:43 final size:43
Alignment explanation
Indices: 17976183--17976277 Score: 145
Period size: 43 Copynumber: 2.2 Consensus size: 43
17976173 CCAGATATGA
* * *
17976183 TCTTACATGTAATTTCATATCGATGCCAATAGCCCAGCTATAG
1 TCTTACACGAAATCTCATATCGATGCCAATAGCCCAGCTATAG
* *
17976226 TCTTACACGAAATCTCATATCGATGCCAATAGCCTAGCTATGG
1 TCTTACACGAAATCTCATATCGATGCCAATAGCCCAGCTATAG
17976269 TCTTACACG
1 TCTTACACG
17976278 TATTATAATC
Statistics
Matches: 47, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 47 1.00
ACGTcount: A:0.29, C:0.25, G:0.15, T:0.31
Consensus pattern (43 bp):
TCTTACACGAAATCTCATATCGATGCCAATAGCCCAGCTATAG
Found at i:17976387 original size:40 final size:41
Alignment explanation
Indices: 17976290--17976391 Score: 125
Period size: 41 Copynumber: 2.5 Consensus size: 41
17976280 TTATAATCTT
* * **
17976290 GCACACTAAGTGCCATACATAGCCGAAGCTATCTCGGTCTC
1 GCACACTAAGTGCCATATATAACCGAAGCTATCTCGGAATC
* * * *
17976331 ACACACTAAGTGCCATATATAACTGAATCTATTTC-GAATC
1 GCACACTAAGTGCCATATATAACCGAAGCTATCTCGGAATC
17976371 GCACACTAAGTGCCATATATA
1 GCACACTAAGTGCCATATATA
17976392 TATTCAAATC
Statistics
Matches: 52, Mismatches: 9, Indels: 1
0.84 0.15 0.02
Matches are distributed among these distances:
40 23 0.44
41 29 0.56
ACGTcount: A:0.33, C:0.26, G:0.15, T:0.25
Consensus pattern (41 bp):
GCACACTAAGTGCCATATATAACCGAAGCTATCTCGGAATC
Found at i:17978744 original size:50 final size:49
Alignment explanation
Indices: 17978684--17978808 Score: 144
Period size: 49 Copynumber: 2.5 Consensus size: 49
17978674 GGTGTCAGTT
* * *
17978684 TAAGACCATGTCTAGGACATGGCATCAGCATGGATCTGT-GAGAGTTAGTG
1 TAAGACCATGTCTAGGACATGGCATCAGCATCGAT-T-TCGAGAGTCACTG
* * ** * *
17978734 TAAGACCATGTCTGGGACATGGCGTTGGCCTCGATTTCGATAGTCACTG
1 TAAGACCATGTCTAGGACATGGCATCAGCATCGATTTCGAGAGTCACTG
17978783 TAAGACCATGTCTAGGACATGGCATC
1 TAAGACCATGTCTAGGACATGGCATC
17978809 GACTTGATGG
Statistics
Matches: 62, Mismatches: 12, Indels: 3
0.81 0.16 0.04
Matches are distributed among these distances:
48 1 0.02
49 32 0.52
50 29 0.47
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (49 bp):
TAAGACCATGTCTAGGACATGGCATCAGCATCGATTTCGAGAGTCACTG
Found at i:17983809 original size:28 final size:28
Alignment explanation
Indices: 17983744--17983842 Score: 119
Period size: 28 Copynumber: 3.5 Consensus size: 28
17983734 CATGAGATTG
* * *
17983744 GCACTAAGTGTGCGGGTTCAAATTGTATA
1 GCACTAAGTGTGCGAGTT-AGATTATATA
*
17983773 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTAGATTATATA
* *
17983801 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCGAGTTAGATTATAT-A
17983829 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
17983843 GGCTTATTAT
Statistics
Matches: 63, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
27 1 0.02
28 45 0.71
29 17 0.27
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTAGATTATATA
Found at i:17989108 original size:40 final size:40
Alignment explanation
Indices: 17989064--17989327 Score: 342
Period size: 40 Copynumber: 6.7 Consensus size: 40
17989054 GCTCCTCGTT
* *
17989064 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAATTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
17989104 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
17989144 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
17989184 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCTCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * *
17989224 CAAATGCCTTCCGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * *
17989263 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGAT-TTAGTAAC-TCGCA
17989304 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
17989328 CAACATTCAA
Statistics
Matches: 203, Mismatches: 15, Indels: 13
0.88 0.06 0.06
Matches are distributed among these distances:
38 2 0.01
39 48 0.24
40 144 0.71
41 9 0.04
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:17997221 original size:39 final size:40
Alignment explanation
Indices: 17997063--17997284 Score: 257
Period size: 40 Copynumber: 5.7 Consensus size: 40
17997053 GCTCCTCGTT
* *
17997063 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCA
* * *
17997103 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
17997143 CAAATGCCTTCGGG-CTTAGCCCGG-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
17997181 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* *
17997220 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGT-ATC-TCGCA
17997261 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
17997285 CATCATTCAA
Statistics
Matches: 164, Mismatches: 9, Indels: 19
0.85 0.05 0.10
Matches are distributed among these distances:
38 38 0.23
39 51 0.31
40 64 0.39
41 11 0.07
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:17997245 original size:117 final size:118
Alignment explanation
Indices: 17997063--17997284 Score: 287
Period size: 117 Copynumber: 1.9 Consensus size: 118
17997053 GCTCCTCGTT
*
17997063 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACATAGCCCGGATATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCGG
*
17997128 AT-TTAGTAAC-TCGCACAAATGCCTTCGGG-CTTAGCCCGGATTAGTATCTCGCA
66 ATATT-GTAACTTAGCAC-AA-GCCTTCGGGACTTAGCCCGGATTAGTATCTCGCA
* **
17997181 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGT-ATCTCGCACAAATGCCTTC-GGATCTTAGTC
1 CAAATGCCTTCGGGACATAGCCCGGATA-TAGTAAT-TCGCACAAATGCCTTCGGGA-CTTAACC
*
17997242 CGGATATTGTCACTTAGCACAAGCCTTCGGGACTTAGCCCGGA
63 CGGATATTGTAACTTAGCACAAGCCTTCGGGACTTAGCCCGGA
17997285 CATCATTCAA
Statistics
Matches: 92, Mismatches: 6, Indels: 13
0.83 0.05 0.12
Matches are distributed among these distances:
116 15 0.16
117 56 0.61
118 21 0.23
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (118 bp):
CAAATGCCTTCGGGACATAGCCCGGATATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCGG
ATATTGTAACTTAGCACAAGCCTTCGGGACTTAGCCCGGATTAGTATCTCGCA
Found at i:18027127 original size:19 final size:19
Alignment explanation
Indices: 18027091--18027128 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
18027081 ATGACTTATT
*
18027091 TTATATTTATTTGAACATA
1 TTATATTTATTTAAACATA
18027110 TTATATTT-TTTAAGACATA
1 TTATATTTATTTAA-ACATA
18027129 AAATGGGCCA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 4 0.24
19 13 0.76
ACGTcount: A:0.37, C:0.05, G:0.05, T:0.53
Consensus pattern (19 bp):
TTATATTTATTTAAACATA
Found at i:18033925 original size:23 final size:23
Alignment explanation
Indices: 18033876--18033930 Score: 65
Period size: 23 Copynumber: 2.4 Consensus size: 23
18033866 CAGCTCGTAT
***
18033876 GAGCTTACTAATTCAGCTCATTG
1 GAGCTTACTAATTCAGCTCAAAA
* *
18033899 GAGCTTAGTGATTCAGCTCAAAA
1 GAGCTTACTAATTCAGCTCAAAA
18033922 GAGCTTACT
1 GAGCTTACT
18033931 GTTCAACTCT
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.29, C:0.20, G:0.20, T:0.31
Consensus pattern (23 bp):
GAGCTTACTAATTCAGCTCAAAA
Found at i:18035411 original size:39 final size:39
Alignment explanation
Indices: 18035294--18035594 Score: 398
Period size: 39 Copynumber: 7.6 Consensus size: 39
18035284 GCTCCTCGTT
* *
18035294 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGT-ATCTCGCA
* * *
18035334 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
18035374 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
18035413 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
*
18035452 CAAATGCCTTCAGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
18035491 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
* * *
18035530 CAAATGCCTTCGGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGG-GCTTAGCCCGGA-ATTAGT-ATC-TCGCA
18035571 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGG-CTTAGCCCGGA
18035595 CATCATTCAA
Statistics
Matches: 241, Mismatches: 13, Indels: 15
0.90 0.05 0.06
Matches are distributed among these distances:
39 169 0.70
40 61 0.25
41 11 0.05
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (39 bp):
CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
Found at i:18039732 original size:37 final size:37
Alignment explanation
Indices: 18039674--18039781 Score: 180
Period size: 37 Copynumber: 2.9 Consensus size: 37
18039664 GCTCAGACGA
* * *
18039674 AATCTCCACATGAAGTTATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
18039711 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
*
18039748 AATCTCCACACATAGTCATCGGGTCTTACCCGGA
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGA
18039782 ATATATTTCC
Statistics
Matches: 67, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 67 1.00
ACGTcount: A:0.26, C:0.31, G:0.19, T:0.25
Consensus pattern (37 bp):
AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
Found at i:18040050 original size:47 final size:47
Alignment explanation
Indices: 18039988--18040278 Score: 393
Period size: 47 Copynumber: 6.1 Consensus size: 47
18039978 ACACGTTTCG
* * * **
18039988 CATTAGCCATTCGGCCTTACCACATATATTCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
* * *
18040035 CATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
*
18040082 CATTGGCCATCCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
18040129 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
* * ** *
18040176 CATTGTCCATTCGGCCTTATCACGCATATATATATACAGGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCA--C----ACATACGCATGTTCACATTCATCA
*
18040229 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATCCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
18040276 CAT
1 CAT
18040279 AAAATCCTAA
Statistics
Matches: 218, Mismatches: 20, Indels: 12
0.87 0.08 0.05
Matches are distributed among these distances:
47 175 0.80
49 1 0.00
51 1 0.00
53 41 0.19
ACGTcount: A:0.26, C:0.31, G:0.12, T:0.32
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
Found at i:18040260 original size:147 final size:141
Alignment explanation
Indices: 18039988--18040278 Score: 429
Period size: 147 Copynumber: 2.0 Consensus size: 141
18039978 ACACGTTTCG
* **
18039988 CATTAGCCATTCGGCCTTACCACATATATTCATGTTCACATTCATCACATTGGCCATTCGGCCTT
1 CATTAGCCATTCGGCCTTACCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
* *
18040053 ATCTCATATATGCATGTTCACATTCATCACATTGGCCATCCGGCCTTATCACACATACGCATGTT
66 ATCTCATATATACAGGTTCACATTCATCACATTGGCCATCCGGCCTTATCACACATACGCATGTT
*
18040118 CACATTCATCA
131 CACATCCATCA
* * *
18040129 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGTCCATTCGGCCTT
1 CATTAGCCATTCGGCCTTACCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
* *
18040194 ATCACGCATATATATATACAGGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACG
66 AT----C-T-CATATATACAGGTTCACATTCATCACATTGGCCATCCGGCCTTATCACACATACG
18040259 CATGTTCACATCCATCA
125 CATGTTCACATCCATCA
18040276 CAT
1 CAT
18040279 AAAATCCTAA
Statistics
Matches: 133, Mismatches: 11, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
141 61 0.46
145 1 0.01
146 1 0.01
147 70 0.53
ACGTcount: A:0.26, C:0.31, G:0.12, T:0.32
Consensus pattern (141 bp):
CATTAGCCATTCGGCCTTACCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
ATCTCATATATACAGGTTCACATTCATCACATTGGCCATCCGGCCTTATCACACATACGCATGTT
CACATCCATCA
Found at i:18042226 original size:85 final size:85
Alignment explanation
Indices: 18042099--18042275 Score: 345
Period size: 85 Copynumber: 2.1 Consensus size: 85
18042089 TTTTATTGCA
*
18042099 CATGCCCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTTTA
1 CATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTTTA
18042164 GCCATAACATCTTGTCCACC
66 GCCATAACATCTTGTCCACC
18042184 CATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTTTA
1 CATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTTTA
18042249 GCCATAACATCTTGTCCACC
66 GCCATAACATCTTGTCCACC
18042269 CATGCTC
1 CATGCTC
18042276 ATGGCCGGCC
Statistics
Matches: 91, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
85 91 1.00
ACGTcount: A:0.27, C:0.27, G:0.08, T:0.38
Consensus pattern (85 bp):
CATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTTTA
GCCATAACATCTTGTCCACC
Found at i:18043801 original size:57 final size:58
Alignment explanation
Indices: 18043724--18043832 Score: 157
Period size: 57 Copynumber: 1.9 Consensus size: 58
18043714 GCCCACTGAT
* * *
18043724 CGATCTCGCTCACATAGTGCTTGGTT-GAAGAACTCGCACACACAGTGCCTCAATTAC
1 CGATCTCGCACACATAGTGCTCGGTTAAAAGAACTCGCACACACAGTGCCTCAATTAC
* * *
18043781 CGATTTCGCACACATAGTGCTCGGTTAAAAGAATTTGCACACACAGTGCCTC
1 CGATCTCGCACACATAGTGCTCGGTTAAAAGAACTCGCACACACAGTGCCTC
18043833 TAATCATTCG
Statistics
Matches: 45, Mismatches: 6, Indels: 1
0.87 0.12 0.02
Matches are distributed among these distances:
57 23 0.51
58 22 0.49
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (58 bp):
CGATCTCGCACACATAGTGCTCGGTTAAAAGAACTCGCACACACAGTGCCTCAATTAC
Found at i:18044076 original size:40 final size:40
Alignment explanation
Indices: 18044044--18044555 Score: 880
Period size: 40 Copynumber: 12.8 Consensus size: 40
18044034 CCAGCATGAT
* * * *
18044044 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* ** * *
18044084 TGCTCTTCGGGGTTTAGCACGGATATATCACTAGCATGAA
1 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* ** *
18044124 TGCTCTTCGAAACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
18044164 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
18044204 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
18044244 TGCTCCTCGGGACTTAGCCCGGATATAGCACTAGCACGAA
1 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
18044284 TGCTCCTCGGGACTTAGCCCGGATATAGCACTAGCACGAA
1 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
18044324 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
18044364 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
18044404 TGCTCCTCGGGACTTAGCCCGGATATACCACTAGCACGAA
1 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
18044444 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
18044484 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
18044524 TGCTCCTCGGGACTTAGCCCGGATATATCACT
1 TGCTCCTCGGGACTTAGCCCGGATATATCACT
18044556 CTCAGTTCTC
Statistics
Matches: 450, Mismatches: 22, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 450 1.00
ACGTcount: A:0.25, C:0.30, G:0.23, T:0.22
Consensus pattern (40 bp):
TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
Found at i:18045869 original size:37 final size:37
Alignment explanation
Indices: 18045810--18045953 Score: 243
Period size: 37 Copynumber: 3.9 Consensus size: 37
18045800 AGCTCAGACG
* * *
18045810 AAATCTCCACATGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
18045847 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
18045884 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
18045921 TAATCTCCACACGTAGTCATCGGGTCTTACCCG
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCG
18045954 AAATATATTT
Statistics
Matches: 103, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 103 1.00
ACGTcount: A:0.26, C:0.31, G:0.19, T:0.24
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:18046228 original size:47 final size:47
Alignment explanation
Indices: 18046166--18046456 Score: 402
Period size: 47 Copynumber: 6.1 Consensus size: 47
18046156 ACACGTTTCG
* * * **
18046166 CATTAGCCATTCGGCCTTACCACATATATTCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
* * *
18046213 CATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
*
18046260 CATTGGCCATCCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
18046307 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
* ** *
18046354 CATTGGCCATTCGGCCTTATCACGCAAATATATATACAGGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCA--C----ACATACGCATGTTCACATTCATCA
*
18046407 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATCCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
18046454 CAT
1 CAT
18046457 AAAATCCTAA
Statistics
Matches: 220, Mismatches: 18, Indels: 12
0.88 0.07 0.05
Matches are distributed among these distances:
47 176 0.80
49 1 0.00
51 1 0.00
53 42 0.19
ACGTcount: A:0.26, C:0.31, G:0.12, T:0.31
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
Found at i:18046439 original size:147 final size:141
Alignment explanation
Indices: 18046166--18046456 Score: 438
Period size: 147 Copynumber: 2.0 Consensus size: 141
18046156 ACACGTTTCG
* **
18046166 CATTAGCCATTCGGCCTTACCACATATATTCATGTTCACATTCATCACATTGGCCATTCGGCCTT
1 CATTAGCCATTCGGCCTTACCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
* * *
18046231 ATCTCATATATGCATGTTCACATTCATCACATTGGCCATCCGGCCTTATCACACATACGCATGTT
66 ATCGCATATATACAGGTTCACATTCATCACATTGGCCATCCGGCCTTATCACACATACGCATGTT
*
18046296 CACATTCATCA
131 CACATCCATCA
* *
18046307 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
1 CATTAGCCATTCGGCCTTACCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
*
18046372 ATCACGCAAATATATATACAGGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACG
66 AT--CGC----ATATATACAGGTTCACATTCATCACATTGGCCATCCGGCCTTATCACACATACG
18046437 CATGTTCACATCCATCA
125 CATGTTCACATCCATCA
18046454 CAT
1 CAT
18046457 AAAATCCTAA
Statistics
Matches: 134, Mismatches: 10, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
141 62 0.46
143 2 0.01
147 70 0.52
ACGTcount: A:0.26, C:0.31, G:0.12, T:0.31
Consensus pattern (141 bp):
CATTAGCCATTCGGCCTTACCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
ATCGCATATATACAGGTTCACATTCATCACATTGGCCATCCGGCCTTATCACACATACGCATGTT
CACATCCATCA
Found at i:18048403 original size:85 final size:85
Alignment explanation
Indices: 18048274--18048452 Score: 340
Period size: 85 Copynumber: 2.1 Consensus size: 85
18048264 TATTTTATTG
*
18048274 CCCATGCCCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
*
18048339 TAGCCATAACATCTTGTCCA
66 TAACCATAACATCTTGTCCA
18048359 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
18048424 TAACCATAACATCTTGTCCA
66 TAACCATAACATCTTGTCCA
18048444 CCCATGCTC
1 CCCATGCTC
18048453 ATGGCCGGCC
Statistics
Matches: 92, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
85 92 1.00
ACGTcount: A:0.27, C:0.28, G:0.08, T:0.37
Consensus pattern (85 bp):
CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
TAACCATAACATCTTGTCCA
Found at i:18049384 original size:27 final size:27
Alignment explanation
Indices: 18049313--18049404 Score: 96
Period size: 27 Copynumber: 3.4 Consensus size: 27
18049303 TGGATAAGTT
*
18049313 GTAGAATTACCGAAAGACCCCTGTA-A
1 GTAGAATTACCGAAATACCCCTGTAGA
**
18049339 GGTAGAATTATTGAAATACCCCTGTAGA
1 -GTAGAATTACCGAAATACCCCTGTAGA
* * * *
18049367 GTAGAATTACCGAGATACCCTTGTGGG
1 GTAGAATTACCGAAATACCCCTGTAGA
*
18049394 GTAAAATTACC
1 GTAGAATTACC
18049405 ATTTTGCACC
Statistics
Matches: 54, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
27 53 0.98
28 1 0.02
ACGTcount: A:0.35, C:0.18, G:0.22, T:0.25
Consensus pattern (27 bp):
GTAGAATTACCGAAATACCCCTGTAGA
Found at i:18052162 original size:27 final size:27
Alignment explanation
Indices: 18052091--18052166 Score: 134
Period size: 28 Copynumber: 2.8 Consensus size: 27
18052081 TGGAGGAAGC
18052091 GTTCTGGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTATGCCACAAATATCT
18052118 GTTTCTGGTGGCTATGCCACAAATATCT
1 G-TTCTGGTGGCTATGCCACAAATATCT
*
18052146 GTTCTGGTGGCTCTGCCACAA
1 GTTCTGGTGGCTATGCCACAA
18052167 TATGAATGAA
Statistics
Matches: 47, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
27 20 0.43
28 27 0.57
ACGTcount: A:0.20, C:0.24, G:0.24, T:0.33
Consensus pattern (27 bp):
GTTCTGGTGGCTATGCCACAAATATCT
Found at i:18052382 original size:277 final size:277
Alignment explanation
Indices: 18051888--18052446 Score: 1100
Period size: 277 Copynumber: 2.0 Consensus size: 277
18051878 TAATGGCTGT
18051888 AATATGAATGAAAACCCAAAAATAGTAAATTTACTAAAATACCCCTAAGTATGAAAATTACCATT
1 AATATGAATGAAAACCCAAAAATAGTAAATTTACTAAAATACCCCTAAGTATGAAAATTACCATT
* *
18051953 ATACCCCTAGGTGTAAAGTGACCGTTATATCCCTAGGGCTAATTTTGACTGAAATGCATGCTATT
66 ATACCCCTAGGTGCAAAGTGACCATTATATCCCTAGGGCTAATTTTGACTGAAATGCATGCTATT
18052018 CTGATTCTGTATGTTGTATGCCATGTCATGTATATCTGTTGCATGGGATATGGGTTATATTGATG
131 CTGATTCTGTATGTTGTATGCCATGTCATGTATATCTGTTGCATGGGATATGGGTTATATTGATG
18052083 GAGGAAGCGTTCTGGTGGCTATGCCACAAATATCTGTTTCTGGTGGCTATGCCACAAATATCTGT
196 GAGGAAGCGTTCTGGTGGCTATGCCACAAATATCTGTTTCTGGTGGCTATGCCACAAATATCTGT
18052148 TCTGGTGGCTCTGCCAC
261 TCTGGTGGCTCTGCCAC
18052165 AATATGAATGAAAACCCAAAAATAGTAAATTTACTAAAATACCCCTAAGTATGAAAATTACCATT
1 AATATGAATGAAAACCCAAAAATAGTAAATTTACTAAAATACCCCTAAGTATGAAAATTACCATT
18052230 ATACCCCTAGGTGCAAAGTGACCATTATATCCCTAGGGCTAATTTTGACTGAAATGCATGCTATT
66 ATACCCCTAGGTGCAAAGTGACCATTATATCCCTAGGGCTAATTTTGACTGAAATGCATGCTATT
18052295 CTGATTCTGTATGTTGTATGCCATGTCATGTATATCTGTTGCATGGGATATGGGTTATATTGATG
131 CTGATTCTGTATGTTGTATGCCATGTCATGTATATCTGTTGCATGGGATATGGGTTATATTGATG
18052360 GAGGAAGCGTTCTGGTGGCTATGCCACAAATATCTGTTTCTGGTGGCTATGCCACAAATATCTGT
196 GAGGAAGCGTTCTGGTGGCTATGCCACAAATATCTGTTTCTGGTGGCTATGCCACAAATATCTGT
18052425 TCTGGTGGCTCTGCCAC
261 TCTGGTGGCTCTGCCAC
18052442 AATAT
1 AATAT
18052447 CTATATCTGG
Statistics
Matches: 280, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
277 280 1.00
ACGTcount: A:0.29, C:0.18, G:0.20, T:0.33
Consensus pattern (277 bp):
AATATGAATGAAAACCCAAAAATAGTAAATTTACTAAAATACCCCTAAGTATGAAAATTACCATT
ATACCCCTAGGTGCAAAGTGACCATTATATCCCTAGGGCTAATTTTGACTGAAATGCATGCTATT
CTGATTCTGTATGTTGTATGCCATGTCATGTATATCTGTTGCATGGGATATGGGTTATATTGATG
GAGGAAGCGTTCTGGTGGCTATGCCACAAATATCTGTTTCTGGTGGCTATGCCACAAATATCTGT
TCTGGTGGCTCTGCCAC
Found at i:18052439 original size:27 final size:26
Alignment explanation
Indices: 18052368--18052482 Score: 149
Period size: 27 Copynumber: 4.3 Consensus size: 26
18052358 TGGAGGAAGC
18052368 GTTCTGGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTATGCCAC-AATATCT
18052395 GTTTCTGGTGGCTATGCCACAAATATCT
1 G-TTCTGGTGGCTATGCCAC-AATATCT
*
18052423 GTTCTGGTGGCTCTGCCACAATATCT
1 GTTCTGGTGGCTATGCCACAATATCT
* * * *
18052449 ATATCTGGTGACTCTGTCACAATATCT
1 GT-TCTGGTGGCTATGCCACAATATCT
18052476 GTTCTGG
1 GTTCTGG
18052483 CAGCCATGTT
Statistics
Matches: 81, Mismatches: 5, Indels: 5
0.89 0.05 0.05
Matches are distributed among these distances:
26 13 0.16
27 41 0.51
28 27 0.33
ACGTcount: A:0.20, C:0.23, G:0.22, T:0.36
Consensus pattern (26 bp):
GTTCTGGTGGCTATGCCACAATATCT
Found at i:18060100 original size:28 final size:28
Alignment explanation
Indices: 18060061--18060175 Score: 143
Period size: 27 Copynumber: 4.3 Consensus size: 28
18060051 ATGGAGGAAG
*
18060061 TGTTT-TGGTGGCTATGCCACAAATATT
1 TGTTTCTGGTGGCTATGCCACAAATATC
18060088 TGTTTCTGGTGGCTATGCCACAAA-ATC
1 TGTTTCTGGTGGCTATGCCACAAATATC
18060115 TG-TTCTGGTGGCTATGCCAC-AATATC
1 TGTTTCTGGTGGCTATGCCACAAATATC
* * * *
18060141 TGTATCTGGTGACTCTGTCAC-AATATC
1 TGTTTCTGGTGGCTATGCCACAAATATC
18060168 TG-TTCTGG
1 TGTTTCTGG
18060176 CAGCCATGCT
Statistics
Matches: 79, Mismatches: 6, Indels: 7
0.86 0.07 0.08
Matches are distributed among these distances:
25 2 0.03
26 28 0.35
27 31 0.39
28 18 0.23
ACGTcount: A:0.20, C:0.20, G:0.23, T:0.37
Consensus pattern (28 bp):
TGTTTCTGGTGGCTATGCCACAAATATC
Found at i:18060127 original size:26 final size:26
Alignment explanation
Indices: 18060061--18060175 Score: 140
Period size: 26 Copynumber: 4.3 Consensus size: 26
18060051 ATGGAGGAAG
* *
18060061 TGTTTTGGTGGCTATGCCACAAATATT
1 TGTTCTGGTGGCTATGCCACAAA-ATC
18060088 TGTTTCTGGTGGCTATGCCACAAAATC
1 TG-TTCTGGTGGCTATGCCACAAAATC
*
18060115 TGTTCTGGTGGCTATGCCACAATATC
1 TGTTCTGGTGGCTATGCCACAAAATC
* * * *
18060141 TGTATCTGGTGACTCTGTCACAATATC
1 TGT-TCTGGTGGCTATGCCACAAAATC
18060168 TGTTCTGG
1 TGTTCTGG
18060176 CAGCCATGCT
Statistics
Matches: 80, Mismatches: 6, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
26 31 0.39
27 29 0.36
28 20 0.25
ACGTcount: A:0.20, C:0.20, G:0.23, T:0.37
Consensus pattern (26 bp):
TGTTCTGGTGGCTATGCCACAAAATC
Found at i:18060163 original size:53 final size:54
Alignment explanation
Indices: 18060061--18060175 Score: 160
Period size: 53 Copynumber: 2.1 Consensus size: 54
18060051 ATGGAGGAAG
* * * *
18060061 TGTTTTGGTGGCTATGCCACAAATATTTGTTTCTGGTGGCTATGCCACAAAATC
1 TGTTCTGGTGGCTATGCCACAAATATCTGTATCTGGTGACTATGCCACAAAATC
* * *
18060115 TGTTCTGGTGGCTATGCCAC-AATATCTGTATCTGGTGACTCTGTCACAATATC
1 TGTTCTGGTGGCTATGCCACAAATATCTGTATCTGGTGACTATGCCACAAAATC
18060168 TGTTCTGG
1 TGTTCTGG
18060176 CAGCCATGCT
Statistics
Matches: 54, Mismatches: 7, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
53 35 0.65
54 19 0.35
ACGTcount: A:0.20, C:0.20, G:0.23, T:0.37
Consensus pattern (54 bp):
TGTTCTGGTGGCTATGCCACAAATATCTGTATCTGGTGACTATGCCACAAAATC
Found at i:18071158 original size:40 final size:40
Alignment explanation
Indices: 18071114--18071417 Score: 404
Period size: 40 Copynumber: 7.7 Consensus size: 40
18071104 GCTCCTCGTT
* * *
18071114 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAATTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
18071154 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
18071194 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
18071234 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* *
18071274 CTAATGCCTTCGGGACTTAACCCGGATTTAGTAACTAGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * * *
18071314 CAAATACCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** * *
18071353 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTTACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGAT-TTAGTAAC-TCGCA
*
18071394 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
18071418 CAGCATTCAA
Statistics
Matches: 240, Mismatches: 18, Indels: 13
0.89 0.07 0.05
Matches are distributed among these distances:
38 2 0.01
39 47 0.20
40 182 0.76
41 9 0.04
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:18079158 original size:40 final size:40
Alignment explanation
Indices: 18079114--18079377 Score: 333
Period size: 40 Copynumber: 6.7 Consensus size: 40
18079104 GCTCCTTGTT
* * * *
18079114 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAATTCACA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
18079154 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
18079194 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
*
18079234 CTAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * *
18079274 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** * *
18079313 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTTACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGAT-TTAGTAAC-TCGCA
*
18079354 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
18079378 CAGCATTCAA
Statistics
Matches: 203, Mismatches: 15, Indels: 13
0.88 0.06 0.06
Matches are distributed among these distances:
38 2 0.01
39 49 0.24
40 143 0.70
41 9 0.04
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:18089719 original size:46 final size:45
Alignment explanation
Indices: 18089624--18089784 Score: 186
Period size: 46 Copynumber: 3.5 Consensus size: 45
18089614 GTGTCAATGC
* * *
18089624 CATGTCCCAGACATGGTCTTACAGTGAC-ACATCTCGTAGCTGATG
1 CATGTCCCAGACATGGTCTTACACTGACTACGTCTCG-AGCCGATG
*
18089669 CATGTCTCAGACAT-GTCTTACACTGACTTACGTCTCGAGGCCGATG
1 CATGTCCCAGACATGGTCTTACACTGAC-TACGTCTCGA-GCCGATG
*
18089715 CATGTCCCAGACAT-GTCTTACACTAGCACT-CGTCTCAATGCCGATG
1 CATGTCCCAGACATGGTCTTACACT-G-ACTACGTCTCGA-GCCGATG
18089761 CCATGTCCCAGACATGGTCTTACA
1 -CATGTCCCAGACATGGTCTTACA
18089785 TTGGCTCTCA
Statistics
Matches: 102, Mismatches: 7, Indels: 11
0.85 0.06 0.09
Matches are distributed among these distances:
44 12 0.12
45 14 0.14
46 50 0.49
47 16 0.16
48 10 0.10
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.27
Consensus pattern (45 bp):
CATGTCCCAGACATGGTCTTACACTGACTACGTCTCGAGCCGATG
Found at i:18098525 original size:55 final size:53
Alignment explanation
Indices: 18098370--18098576 Score: 166
Period size: 53 Copynumber: 3.8 Consensus size: 53
18098360 TTCCTTTTTA
* * * *
18098370 AACTTACCATTGCCATGTCTTGATATGGTCTTACGTGGTATCCTTGCCTTATG
1 AACTCACCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATG
* * * * *
18098423 AACTCACCATTGCCACGAT-TTGGCATGGTCTTACATGGGATCTTTGCCTTATTG
1 AACTCACCAATGCCATG-TCTTGACATGGTCTTACATGGTATCCTTGCCTTA-TG
** * * * * * *
18098477 TAGTTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTGTCA
1 -AACTCACCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTAT-G
* * * *
18098532 AACTTACCAATGCCGTGCCTT-AGCATGGTCTTACTTGGTATCCTT
1 AACTCACCAATGCCATGTCTTGA-CATGGTCTTACATGGTATCCTT
18098577 AAACCCTAAT
Statistics
Matches: 120, Mismatches: 28, Indels: 11
0.75 0.18 0.07
Matches are distributed among these distances:
53 43 0.36
54 40 0.33
55 37 0.31
ACGTcount: A:0.20, C:0.24, G:0.18, T:0.38
Consensus pattern (53 bp):
AACTCACCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATG
Found at i:18103468 original size:43 final size:43
Alignment explanation
Indices: 18103418--18103559 Score: 148
Period size: 43 Copynumber: 3.3 Consensus size: 43
18103408 TATCCCAAAT
* *
18103418 ATGGTCTTACATGGTATCACATATCGATGCCATTGTCCCAGAT
1 ATGGTCTTACATGGTATCACATATCGATGCCAATGTCCCAGAC
* ** *
18103461 A-GAGTCTTACACGAAATCGA-ATAACGATGCCAATGTCCCAGAC
1 ATG-GTCTTACATGGTATC-ACATATCGATGCCAATGTCCCAGAC
* *
18103504 ATGGTCTTATAT-GTAATCACA-ATACAATGCCAATGTCCCAGAC
1 ATGGTCTTACATGGT-ATCACATAT-CGATGCCAATGTCCCAGAC
18103547 ATGGTCTTACATG
1 ATGGTCTTACATG
18103560 AAATTACATC
Statistics
Matches: 79, Mismatches: 13, Indels: 13
0.75 0.12 0.12
Matches are distributed among these distances:
42 3 0.04
43 74 0.94
44 2 0.03
ACGTcount: A:0.32, C:0.23, G:0.18, T:0.27
Consensus pattern (43 bp):
ATGGTCTTACATGGTATCACATATCGATGCCAATGTCCCAGAC
Found at i:18131849 original size:18 final size:19
Alignment explanation
Indices: 18131816--18131851 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
18131806 TTAAATTTAG
*
18131816 TAAATTAATTGAATTATGT
1 TAAATTAAATGAATTATGT
18131835 TAAATTAAATG-ATTATG
1 TAAATTAAATGAATTATG
18131852 GTGCCAAGTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 6 0.38
19 10 0.62
ACGTcount: A:0.44, C:0.00, G:0.11, T:0.44
Consensus pattern (19 bp):
TAAATTAAATGAATTATGT
Found at i:18136921 original size:37 final size:37
Alignment explanation
Indices: 18136863--18136970 Score: 180
Period size: 37 Copynumber: 2.9 Consensus size: 37
18136853 GCTCGGATGT
* *
18136863 AATCTCCACACGAAGTTATCGGGTCTTACCCGGACAA
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAA
*
18136900 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAA
*
18136937 AATCTCCACACGTAGTCATCGGGTCTCACCCGGA
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGA
18136971 ATATATTTCC
Statistics
Matches: 67, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 67 1.00
ACGTcount: A:0.26, C:0.32, G:0.19, T:0.22
Consensus pattern (37 bp):
AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAA
Found at i:18137185 original size:47 final size:47
Alignment explanation
Indices: 18137133--18137694 Score: 849
Period size: 47 Copynumber: 12.0 Consensus size: 47
18137123 TTTCACACTA
* * * * *
18137133 GCCATTCGGCTTTACCACATATATGCATTTTCATATTCACCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
* *
18137180 GCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
* *
18137227 GCCATTCGGCCTTATCACATATATGCATGCTCACATTTATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
* *
18137274 GCCATTCGGCCTCATCACATATATGCATGTTCACATTCACCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
* * *
18137321 GCCAGTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
*
18137368 GCCATTCGG-CTTCATCACATATATGCATGTTCACATTCATCACATAG
1 GCCATTCGGCCTT-ATCACATATATGCATGTTCACATTCATCACATTG
* *
18137415 GCCATTCGGCCTTATCACATATATGCATGTTCATATTCACCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
* *
18137462 GCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
* *
18137509 GCCATTCAG-CTTCATCACATATATGCATGTTCACATTCATCACATAG
1 GCCATTCGGCCTT-ATCACATATATGCATGTTCACATTCATCACATTG
* *
18137556 GCCATTCGGCCTTATCACATATATGCATGTTCATATTCACCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
* * *
18137603 GCCATTCGACCTTATCACACATATGCATGCTCACATTCATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
*
18137650 GCCATTCGGCCTCATCACATATATGCATGTTCACATTCATCACAT
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACAT
18137695 AAAATCCTAA
Statistics
Matches: 465, Mismatches: 46, Indels: 8
0.90 0.09 0.02
Matches are distributed among these distances:
46 6 0.01
47 453 0.97
48 6 0.01
ACGTcount: A:0.26, C:0.30, G:0.12, T:0.32
Consensus pattern (47 bp):
GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
Found at i:18137332 original size:141 final size:141
Alignment explanation
Indices: 18137125--18137695 Score: 1002
Period size: 141 Copynumber: 4.0 Consensus size: 141
18137115 CCTACATATT
* * *
18137125 TCACACTA-GCCATTCGGCTTTACCACATATATGCATTTTCATATTCACCACATTGGCCATTCGG
1 TCACA-TAGGCCATTCGGCCTTATCACATATATGCATGTTCATATTCACCACATTGGCCATTCGG
18137189 CCTTATCACACATATGCATGCTCACATTCATCACATTGGCCATTCGGCCTT-ATCACATATATGC
65 CCTTATCACACATATGCATGCTCACATTCATCACATTGGCCATTCGG-CTTCATCACATATATGC
* *
18137253 ATGCTCACATTTA
129 ATGTTCACATTCA
* * * *
18137266 TCACATTGGCCATTCGGCCTCATCACATATATGCATGTTCACATTCACCACATTGGCCAGTCGGC
1 TCACATAGGCCATTCGGCCTTATCACATATATGCATGTTCATATTCACCACATTGGCCATTCGGC
18137331 CTTATCACACATATGCATGCTCACATTCATCACATTGGCCATTCGGCTTCATCACATATATGCAT
66 CTTATCACACATATGCATGCTCACATTCATCACATTGGCCATTCGGCTTCATCACATATATGCAT
18137396 GTTCACATTCA
131 GTTCACATTCA
18137407 TCACATAGGCCATTCGGCCTTATCACATATATGCATGTTCATATTCACCACATTGGCCATTCGGC
1 TCACATAGGCCATTCGGCCTTATCACATATATGCATGTTCATATTCACCACATTGGCCATTCGGC
*
18137472 CTTATCACACATATGCATGCTCACATTCATCACATTGGCCATTCAGCTTCATCACATATATGCAT
66 CTTATCACACATATGCATGCTCACATTCATCACATTGGCCATTCGGCTTCATCACATATATGCAT
18137537 GTTCACATTCA
131 GTTCACATTCA
*
18137548 TCACATAGGCCATTCGGCCTTATCACATATATGCATGTTCATATTCACCACATTGGCCATTCGAC
1 TCACATAGGCCATTCGGCCTTATCACATATATGCATGTTCATATTCACCACATTGGCCATTCGGC
*
18137613 CTTATCACACATATGCATGCTCACATTCATCACATTGGCCATTCGGCCTCATCACATATATGCAT
66 CTTATCACACATATGCATGCTCACATTCATCACATTGGCCATTCGGCTTCATCACATATATGCAT
18137678 GTTCACATTCA
131 GTTCACATTCA
18137689 TCACATA
1 TCACATA
18137696 AAATCCTAAA
Statistics
Matches: 411, Mismatches: 17, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
140 4 0.01
141 407 0.99
ACGTcount: A:0.27, C:0.30, G:0.12, T:0.32
Consensus pattern (141 bp):
TCACATAGGCCATTCGGCCTTATCACATATATGCATGTTCATATTCACCACATTGGCCATTCGGC
CTTATCACACATATGCATGCTCACATTCATCACATTGGCCATTCGGCTTCATCACATATATGCAT
GTTCACATTCA
Found at i:18142319 original size:21 final size:21
Alignment explanation
Indices: 18142293--18142334 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
18142283 TTGTCATAAT
18142293 AGTTAAACATAGAGATTCATA
1 AGTTAAACATAGAGATTCATA
18142314 AGTTAAACATAGAGATTCATA
1 AGTTAAACATAGAGATTCATA
18142335 CTTAAATAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.48, C:0.10, G:0.14, T:0.29
Consensus pattern (21 bp):
AGTTAAACATAGAGATTCATA
Found at i:18143917 original size:43 final size:43
Alignment explanation
Indices: 18143793--18143946 Score: 157
Period size: 43 Copynumber: 3.6 Consensus size: 43
18143783 CAATACCATA
* * * *** *
18143793 TCCCAGATATGGTCTTACATGTTATCACATATTGATGCTATTG
1 TCCCAGACATGGTCTTACATGTAATCAAATAGCAATGCCATTG
* * * * * *
18143836 TCCCAGACAAGGTCTTAGACGAAATCGAATAGCGATGCCATTG
1 TCCCAGACATGGTCTTACATGTAATCAAATAGCAATGCCATTG
*
18143879 TCCCAGACATGGTCTTACATGTAATCAAAATA-CAATGCCAATG
1 TCCCAGACATGGTCTTACATGTAATC-AAATAGCAATGCCATTG
*
18143922 TCCCAGACATGGCCTTACATGTAAT
1 TCCCAGACATGGTCTTACATGTAAT
18143947 TACATCTTGG
Statistics
Matches: 91, Mismatches: 19, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
43 87 0.96
44 4 0.04
ACGTcount: A:0.31, C:0.23, G:0.18, T:0.29
Consensus pattern (43 bp):
TCCCAGACATGGTCTTACATGTAATCAAATAGCAATGCCATTG
Found at i:18148152 original size:40 final size:40
Alignment explanation
Indices: 18148018--18148154 Score: 206
Period size: 40 Copynumber: 3.5 Consensus size: 40
18148008 ACCCAAGTAT
*
18148018 CTTCGGGAT-TTAG-CCGGATATAACAACTCGCACAAATGC
1 CTTCGGG-TCTTAGCCCGGATATAGCAACTCGCACAAATGC
* * *
18148057 CTTCGGGTCCTAGCTCGGATACAGCAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
18148097 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
*
18148137 CTTTGGGTCTTAGCCCGG
1 CTTCGGGTCTTAGCCCGG
18148155 TTATCATCCG
Statistics
Matches: 88, Mismatches: 8, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
38 1 0.01
39 10 0.11
40 77 0.88
ACGTcount: A:0.24, C:0.29, G:0.23, T:0.23
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
Found at i:18160522 original size:18 final size:18
Alignment explanation
Indices: 18160480--18160522 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
18160470 GCCCATTCCG
*
18160480 AAGTATATATATATACAT
1 AAGTATGTATATATACAT
18160498 ATA-TATGTATATATACAT
1 A-AGTATGTATATATACAT
18160516 AAGTATG
1 AAGTATG
18160523 CCCATTCGTG
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
17 1 0.05
18 20 0.91
19 1 0.05
ACGTcount: A:0.47, C:0.05, G:0.09, T:0.40
Consensus pattern (18 bp):
AAGTATGTATATATACAT
Found at i:18161044 original size:27 final size:28
Alignment explanation
Indices: 18160960--18161057 Score: 128
Period size: 27 Copynumber: 3.5 Consensus size: 28
18160950 CATGAGATTG
* * *
18160960 GCACTAAGTGTGCGGGTTTAAATTGT-TCA
1 GCACTAAGTGTGCGAGTTT-GATTATAT-A
18160989 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
18161017 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
18161044 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
18161058 GACTTAATAT
Statistics
Matches: 64, Mismatches: 4, Indels: 4
0.89 0.06 0.06
Matches are distributed among these distances:
27 24 0.38
28 21 0.33
29 19 0.30
ACGTcount: A:0.26, C:0.13, G:0.29, T:0.33
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:18161071 original size:29 final size:27
Alignment explanation
Indices: 18160988--18161071 Score: 96
Period size: 27 Copynumber: 3.0 Consensus size: 27
18160978 TAAATTGTTC
* *
18160988 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTAATTATAT
* *
18161016 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTAATTATAT
*
18161043 AGCACTGAGTGTGCGGACTTAATATATAT
1 AGCACTAAGTGTGC-GACTTAAT-TATAT
18161072 TTTTGAATCA
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
27 23 0.46
28 22 0.44
29 5 0.10
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTAATTATAT
Found at i:18167143 original size:28 final size:28
Alignment explanation
Indices: 18167080--18167177 Score: 128
Period size: 27 Copynumber: 3.5 Consensus size: 28
18167070 ATATTAAGTC
*
18167080 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
18167107 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * *
18167135 CGCACACTTAGTGCTGA-ACAATTTAAACC
1 CGCACACTTAGTGCT-ATATAA-TCAAACT
18167164 CGCACACTTAGTGC
1 CGCACACTTAGTGC
18167178 CAATCTCATG
Statistics
Matches: 64, Mismatches: 4, Indels: 4
0.89 0.06 0.06
Matches are distributed among these distances:
27 22 0.34
28 22 0.34
29 20 0.31
ACGTcount: A:0.33, C:0.29, G:0.13, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:18173029 original size:27 final size:27
Alignment explanation
Indices: 18172975--18173138 Score: 170
Period size: 27 Copynumber: 6.1 Consensus size: 27
18172965 ATGGTATTTT
* *
18172975 TACCCCACAAGGGTATCTC-GTAATTC
1 TACCCTACAAGGGTATTTCGGTAATTC
** *
18173001 TACCCT-GTAGGGCTATTTCGGTATTTC
1 TACCCTACAAGGG-TATTTCGGTAATTC
18173028 TACCCTACAAGGGTATTTCGGTAATTC
1 TACCCTACAAGGGTATTTCGGTAATTC
* ** *
18173055 TATCCTACGGGGGTATTTCGATAATTC
1 TACCCTACAAGGGTATTTCGGTAATTC
* ***
18173082 TACCCTACAGGGGTATTTTAATAATTC
1 TACCCTACAAGGGTATTTCGGTAATTC
* *
18173109 TACCCTACAGGGGTATTTCGATAATTC
1 TACCCTACAAGGGTATTTCGGTAATTC
18173136 TAC
1 TAC
18173139 AACTTATCCA
Statistics
Matches: 117, Mismatches: 18, Indels: 5
0.84 0.13 0.04
Matches are distributed among these distances:
25 4 0.03
26 10 0.09
27 99 0.85
28 4 0.03
ACGTcount: A:0.24, C:0.23, G:0.18, T:0.35
Consensus pattern (27 bp):
TACCCTACAAGGGTATTTCGGTAATTC
Found at i:18173083 original size:54 final size:53
Alignment explanation
Indices: 18172975--18173138 Score: 202
Period size: 54 Copynumber: 3.1 Consensus size: 53
18172965 ATGGTATTTT
* * ** * * *
18172975 TACCCCACAAGGGTATCTCGTAATTCTACCCTGTAGGGCTATTTCGGTATTTC
1 TACCCTACAAGGGTATTTCGTAATTCTACCCTACAGGGGTATTTCGATAATTC
* *
18173028 TACCCTACAAGGGTATTTCGGTAATTCTATCCTACGGGGGTATTTCGATAATTC
1 TACCCTACAAGGGTATTTC-GTAATTCTACCCTACAGGGGTATTTCGATAATTC
* **
18173082 TACCCTACAGGGGTATTTTAATAATTCTACCCTACAGGGGTATTTCGATAATTC
1 TACCCTACAAGGGTA-TTTCGTAATTCTACCCTACAGGGGTATTTCGATAATTC
18173136 TAC
1 TAC
18173139 AACTTATCCA
Statistics
Matches: 95, Mismatches: 14, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
53 17 0.18
54 75 0.79
55 3 0.03
ACGTcount: A:0.24, C:0.23, G:0.18, T:0.35
Consensus pattern (53 bp):
TACCCTACAAGGGTATTTCGTAATTCTACCCTACAGGGGTATTTCGATAATTC
Found at i:18173099 original size:81 final size:80
Alignment explanation
Indices: 18172985--18173137 Score: 207
Period size: 81 Copynumber: 1.9 Consensus size: 80
18172975 TACCCCACAA
** ** * *
18172985 GGGTATCTCGTAATTCTACCCTGTAGGGCTATTTCGGTATTTCTACCCTACAAGGGTATTTCGGT
1 GGGTATCTCGTAATTCTACCCTACAGGGCTATTTCAATAATTCTACCCTACAAGGGTATTTCGAT
18173050 AATTCTATCCTACGG
66 AATTCTATCCTACGG
* * * *
18173065 GGGTATTTCGATAATTCTACCCTACAGGGGTATTTTAATAATTCTACCCTACAGGGGTATTTCGA
1 GGGTATCTCG-TAATTCTACCCTACAGGGCTATTTCAATAATTCTACCCTACAAGGGTATTTCGA
18173130 TAATTCTA
65 TAATTCTA
18173138 CAACTTATCC
Statistics
Matches: 62, Mismatches: 10, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
80 9 0.15
81 53 0.85
ACGTcount: A:0.24, C:0.20, G:0.20, T:0.37
Consensus pattern (80 bp):
GGGTATCTCGTAATTCTACCCTACAGGGCTATTTCAATAATTCTACCCTACAAGGGTATTTCGAT
AATTCTATCCTACGG
Found at i:18175912 original size:43 final size:42
Alignment explanation
Indices: 18175831--18175914 Score: 114
Period size: 42 Copynumber: 2.0 Consensus size: 42
18175821 TGTAAAACTA
* ***
18175831 TGTCTGGGACATTAGCATCGTATTTGATTTTGTGTAAGACCC
1 TGTCTGGGACAGTAGCATCGTATTTGATTACATGTAAGACCC
*
18175873 TGTCTGGGACAGTGGCATCGATATTTGATTACATGTAAGACC
1 TGTCTGGGACAGTAGCATCG-TATTTGATTACATGTAAGACC
18175915 ACGTATGCGA
Statistics
Matches: 36, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
42 18 0.50
43 18 0.50
ACGTcount: A:0.24, C:0.17, G:0.25, T:0.35
Consensus pattern (42 bp):
TGTCTGGGACAGTAGCATCGTATTTGATTACATGTAAGACCC
Found at i:18180379 original size:29 final size:29
Alignment explanation
Indices: 18180316--18180383 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 29
18180306 TAATCAACCG
18180316 CGCACACTTAGTGCCATGCACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
18180345 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
18180374 CGCACACTTA
1 CGCACACTTA
18180384 CCTTTTCCGC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 3 0.09
29 31 0.91
ACGTcount: A:0.28, C:0.31, G:0.13, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:18180524 original size:29 final size:30
Alignment explanation
Indices: 18180485--18180563 Score: 110
Period size: 29 Copynumber: 2.7 Consensus size: 30
18180475 CTTAATAATC
18180485 AACCGCGCACACTTAGTGCCATGTAC-TTTA
1 AACC-CGCACACTTAGTGCCATGTACATTTA
*
18180515 AACTCGCACACTTAGTG-C-TGTACAATTTA
1 AACCCGCACACTTAGTGCCATGTAC-ATTTA
18180544 AACCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
18180564 ATCTCATGAC
Statistics
Matches: 43, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
27 5 0.12
28 1 0.02
29 33 0.77
30 4 0.09
ACGTcount: A:0.29, C:0.30, G:0.15, T:0.25
Consensus pattern (30 bp):
AACCCGCACACTTAGTGCCATGTACATTTA
Found at i:18180557 original size:174 final size:174
Alignment explanation
Indices: 18180031--18180532 Score: 959
Period size: 174 Copynumber: 2.9 Consensus size: 174
18180021 AACTCAAGGT
* *
18180031 ACTTACCTTTTCCGCTGTCCAAAATTGACTCGGTAAAGTCGCACCCTTCATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
*
18180096 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCACACACTTAGTGCCATGT
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
18180161 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
131 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
18180205 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
*
18180270 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGC
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
18180335 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
131 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
18180379 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
18180444 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
*
18180509 ACTTTAAACTCGCACACTTAGTGC
131 ACTTTAAACTCACACACTTAGTGC
18180533 TGTACAATTT
Statistics
Matches: 322, Mismatches: 6, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
174 322 1.00
ACGTcount: A:0.31, C:0.25, G:0.14, T:0.30
Consensus pattern (174 bp):
ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
Found at i:18182592 original size:6 final size:6
Alignment explanation
Indices: 18182574--18182661 Score: 74
Period size: 6 Copynumber: 14.3 Consensus size: 6
18182564 AAGAAACATT
*
18182574 ATCAGA A-CTAGA ATCAGA ATCAGA ATCAGA ATCAG- GTGACAGA ATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA
* * *
18182623 ATCAGA ATCAGT ATCAGGTA A-CAGA ATCAAA AGCAGA AT
1 ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA AT
18182662 GTGAATGCAA
Statistics
Matches: 66, Mismatches: 8, Indels: 16
0.73 0.09 0.18
Matches are distributed among these distances:
5 4 0.06
6 53 0.80
7 7 0.11
8 2 0.03
ACGTcount: A:0.48, C:0.16, G:0.19, T:0.17
Consensus pattern (6 bp):
ATCAGA
Found at i:18182595 original size:18 final size:18
Alignment explanation
Indices: 18182574--18182661 Score: 74
Period size: 19 Copynumber: 4.8 Consensus size: 18
18182564 AAGAAACATT
18182574 ATCAGAA-CTAGAATCAGA
1 ATCAGAATC-AGAATCAGA
18182592 ATCAGAATCAGAATCAG-
1 ATCAGAATCAGAATCAGA
*
18182609 GTGACAGAATCAGAATCAGA
1 AT--CAGAATCAGAATCAGA
*
18182629 ATCAGTATCAGGTAA-CAGA
1 ATCAGAATCA-G-AATCAGA
* *
18182648 ATCAAAAGCAGAAT
1 ATCAGAATCAGAAT
18182662 GTGAATGCAA
Statistics
Matches: 57, Mismatches: 6, Indels: 14
0.74 0.08 0.18
Matches are distributed among these distances:
17 3 0.05
18 23 0.40
19 28 0.49
20 3 0.05
ACGTcount: A:0.48, C:0.16, G:0.19, T:0.17
Consensus pattern (18 bp):
ATCAGAATCAGAATCAGA
Found at i:18182621 original size:31 final size:31
Alignment explanation
Indices: 18182583--18182661 Score: 122
Period size: 31 Copynumber: 2.5 Consensus size: 31
18182573 TATCAGAACT
*
18182583 AGAATCAGAATCAGAATCAGAATCAGGTGAC
1 AGAATCAGAATCAGAATCAGAATCAGGTAAC
*
18182614 AGAATCAGAATCAGAATCAGTATCAGGTAAC
1 AGAATCAGAATCAGAATCAGAATCAGGTAAC
* *
18182645 AGAATCAAAAGCAGAAT
1 AGAATCAGAATCAGAAT
18182662 GTGAATGCAA
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 44 1.00
ACGTcount: A:0.48, C:0.15, G:0.20, T:0.16
Consensus pattern (31 bp):
AGAATCAGAATCAGAATCAGAATCAGGTAAC
Found at i:18182872 original size:67 final size:67
Alignment explanation
Indices: 18182764--18182917 Score: 263
Period size: 67 Copynumber: 2.3 Consensus size: 67
18182754 CACCACAGAA
*
18182764 ATTGCAGCGAGGTTGCCAGATATTGTGACGAAGTCACCAGAACAGATATAAGTGGCGAAGCCACC
1 ATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCAGAACAGATATAAGTGGCGAAGCCACC
18182829 AG
66 AG
* * * *
18182831 ATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTTACCAGAACAGATATAGGTGGTGAGGCCACC
1 ATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCAGAACAGATATAAGTGGCGAAGCCACC
18182896 AG
66 AG
18182898 ATTGCAGCGAGGCTGCCAGA
1 ATTGCAGCGAGGCTGCCAGA
18182918 ACGCTTCCTC
Statistics
Matches: 82, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
67 82 1.00
ACGTcount: A:0.31, C:0.21, G:0.31, T:0.18
Consensus pattern (67 bp):
ATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCAGAACAGATATAAGTGGCGAAGCCACC
AG
Found at i:18183197 original size:27 final size:26
Alignment explanation
Indices: 18183143--18183470 Score: 327
Period size: 27 Copynumber: 12.3 Consensus size: 26
18183133 GGGGTAAAAT
* *
18183143 GGTAATTTTACCC-A-AGGGTATCTC
1 GGTAATTCTACCCTACAGGGTATTTC
*
18183167 AGTAATTCTACCCTACAGGGATATTTC
1 GGTAATTCTACCCTACAGGG-TATTTC
* *
18183194 AGTAATTCTACCCTATAAGGGTATTTC
1 GGTAATTCTACCCTA-CAGGGTATTTC
* *
18183221 GGTATTTCTACCTTACAAGGGTATTTC
1 GGTAATTCTACCCTAC-AGGGTATTTC
* *
18183248 GATAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACA-GGGTATTTC
* * *
18183275 AGTAATTCTACCCTATAGGGGTATTTT
1 GGTAATTCTACCCTACA-GGGTATTTC
* * *
18183302 GGTATTTCTACCTTATAGGGGTATTTC
1 GGTAATTCTACCCTACA-GGGTATTTC
* *
18183329 GGTATTTCTACCCTACAAGGGTATTTT
1 GGTAATTCTACCCTAC-AGGGTATTTC
* *
18183356 AGTAATTCTACCCTACAAGGGTATTTT
1 GGTAATTCTACCCTAC-AGGGTATTTC
* *
18183383 GGTATTTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACA-GGGTATTTC
*
18183410 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTAC-AGGGTATTTC
*
18183437 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTAC-AGGGTATTTC
*
18183464 GATAATT
1 GGTAATT
18183471 TTGTAAATCA
Statistics
Matches: 266, Mismatches: 29, Indels: 15
0.86 0.09 0.05
Matches are distributed among these distances:
24 11 0.04
25 1 0.00
26 6 0.02
27 242 0.91
28 6 0.02
ACGTcount: A:0.25, C:0.19, G:0.18, T:0.38
Consensus pattern (26 bp):
GGTAATTCTACCCTACAGGGTATTTC
Found at i:18183230 original size:54 final size:54
Alignment explanation
Indices: 18183155--18183463 Score: 379
Period size: 54 Copynumber: 5.7 Consensus size: 54
18183145 TAATTTTACC
* * *
18183155 CAAGGGTATCTCAGTAATTCTACCCTAC-AGGGATATTTCAGTAATTCTACCCTA
1 CAAGGGTATTTCGGTATTTCTACCCTACAAGGG-TATTTCAGTAATTCTACCCTA
* *
18183209 TAAGGGTATTTCGGTATTTCTACCTTACAAGGGTATTTC-GATAATTCTACCCTA
1 CAAGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCAG-TAATTCTACCCTA
* ** * * * ** * *
18183263 CAGGGGTATTTTAGTAATTCTACCCTATAGGGGTATTTTGGTATTTCTACCTTA
1 CAAGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTA
* * *
18183317 TAGGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTTAGTAATTCTACCCTA
1 CAAGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTA
* * ** *
18183371 CAAGGGTATTTTGGTATTTCTACCCTACAGGGGTATTTTGGTATTTCTACCCTA
1 CAAGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTA
18183425 CAAGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTC
1 CAAGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTC
18183464 GATAATTTTG
Statistics
Matches: 218, Mismatches: 34, Indels: 6
0.84 0.13 0.02
Matches are distributed among these distances:
53 1 0.00
54 212 0.97
55 5 0.02
ACGTcount: A:0.24, C:0.19, G:0.18, T:0.38
Consensus pattern (54 bp):
CAAGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTA
Found at i:18183486 original size:81 final size:81
Alignment explanation
Indices: 18183155--18183464 Score: 415
Period size: 81 Copynumber: 3.8 Consensus size: 81
18183145 TAATTTTACC
* * * *
18183155 CAAGGGTATCTCAGTAATTCTACCCTAC-AGGGATATTTCAGTAATTCTACCCTATAAGGGTATT
1 CAAGGGTATTTCGGTATTTCTACCCTACAAGGG-TATTTCAGTAATTCTACCCTACAAGGGTATT
*
18183219 TCGGTATTTCTACCTTA
65 TCGGTATTTCTACCCTA
* * * * * *
18183236 CAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTTAGTAATTCTACCCTATAGGGGTATTT
1 CAAGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAAGGGTATTT
* *
18183301 TGGTATTTCTACCTTA
66 CGGTATTTCTACCCTA
* * *
18183317 TAGGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTTAGTAATTCTACCCTACAAGGGTATTT
1 CAAGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAAGGGTATTT
*
18183382 TGGTATTTCTACCCTA
66 CGGTATTTCTACCCTA
* * * *
18183398 CAGGGGTATTTTGGTATTTCTACCCTACAAGGGTATTTCGGTATTTCTACCCTACAAGGGTATTT
1 CAAGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAAGGGTATTT
18183463 CG
66 CG
18183465 ATAATTTTGT
Statistics
Matches: 207, Mismatches: 21, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
81 204 0.99
82 3 0.01
ACGTcount: A:0.24, C:0.19, G:0.19, T:0.38
Consensus pattern (81 bp):
CAAGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAAGGGTATTT
CGGTATTTCTACCCTA
Found at i:18183496 original size:27 final size:27
Alignment explanation
Indices: 18183466--18183592 Score: 164
Period size: 27 Copynumber: 4.7 Consensus size: 27
18183456 GGTATTTCGA
* * *
18183466 TAATTTTGTAAATCAAGGGTAAAACTG
1 TAATTCTGTAAATCGAGGGTAAAACGG
*
18183493 TAATTCTGTAAATCGAGCGTAAAACGG
1 TAATTCTGTAAATCGAGGGTAAAACGG
* *
18183520 TAATTTTGTAAATCGAGGGTGAAACGG
1 TAATTCTGTAAATCGAGGGTAAAACGG
* *
18183547 TAATTCTATAAATCGAGGGTAAAATGG
1 TAATTCTGTAAATCGAGGGTAAAACGG
**
18183574 TAATTCTACAAATCGAGGG
1 TAATTCTGTAAATCGAGGG
18183593 CATTTCAGTA
Statistics
Matches: 88, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 88 1.00
ACGTcount: A:0.38, C:0.10, G:0.23, T:0.29
Consensus pattern (27 bp):
TAATTCTGTAAATCGAGGGTAAAACGG
Found at i:18185899 original size:28 final size:25
Alignment explanation
Indices: 18185849--18185907 Score: 100
Period size: 25 Copynumber: 2.4 Consensus size: 25
18185839 AGCTATAAAT
18185849 GGTAAGCTCCTCCGAGCTTAATAAC
1 GGTAAGCTCCTCCGAGCTTAATAAC
*
18185874 GGTAAGCTCCTCCGAGCTTAATAAT
1 GGTAAGCTCCTCCGAGCTTAATAAC
*
18185899 AGTAAGCTC
1 GGTAAGCTC
18185908 ATGTAAGCTA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
25 32 1.00
ACGTcount: A:0.29, C:0.25, G:0.20, T:0.25
Consensus pattern (25 bp):
GGTAAGCTCCTCCGAGCTTAATAAC
Found at i:18185943 original size:25 final size:25
Alignment explanation
Indices: 18185849--18185941 Score: 89
Period size: 25 Copynumber: 3.7 Consensus size: 25
18185839 AGCTATAAAT
*
18185849 GGTAAGCTCCTCCGAGCTTAATAAC
1 GGTAAGCTCCTACGAGCTTAATAAC
* *
18185874 GGTAAGCTCCTCCGAGCTTAATAAT
1 GGTAAGCTCCTACGAGCTTAATAAC
* * ***
18185899 AGTAAGCTCATGTAAGC-TAAGTAAC
1 GGTAAGCTCCTACGAGCTTAA-TAAC
*
18185924 GGTAAGCTCGTACGAGCT
1 GGTAAGCTCCTACGAGCT
18185942 AAAATTGGTA
Statistics
Matches: 54, Mismatches: 12, Indels: 3
0.78 0.17 0.04
Matches are distributed among these distances:
24 3 0.06
25 51 0.94
ACGTcount: A:0.30, C:0.23, G:0.23, T:0.25
Consensus pattern (25 bp):
GGTAAGCTCCTACGAGCTTAATAAC
Found at i:18186829 original size:20 final size:20
Alignment explanation
Indices: 18186801--18186838 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
18186791 AACTATCATG
*
18186801 TTTTCTTTATTTTATTAACC
1 TTTTATTTATTTTATTAACC
18186821 TTTTATTTATTTTATTAA
1 TTTTATTTATTTTATTAA
18186839 TAAAAAACAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.24, C:0.08, G:0.00, T:0.68
Consensus pattern (20 bp):
TTTTATTTATTTTATTAACC
Found at i:18190970 original size:27 final size:27
Alignment explanation
Indices: 18190940--18191117 Score: 178
Period size: 27 Copynumber: 6.6 Consensus size: 27
18190930 ATATTGAGTC
* *
18190940 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* *
18190967 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
18190994 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
18191022 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
18191049 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* * *
18191076 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
18191103 CACACACTTAGTGCT
1 CGCACACTTAGTGCT
18191118 GTACAATTTA
Statistics
Matches: 128, Mismatches: 20, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
27 104 0.81
28 24 0.19
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Done.