Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 82679320
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4050000 characters in sequence are not A, C, G, or T
File 74 of 255
Found at i:21891925 original size:31 final size:31
Alignment explanation
Indices: 21891890--21891953 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
21891880 CGTTTACAGT
*
21891890 AAAGGCTTCGGCCCAATAATATGAAATTTGA
1 AAAGGCTTCGGCCCAATAATATGAAATATGA
* **
21891921 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAATAATATGAAATATGA
21891952 AA
1 AA
21891954 TATGAAAAGG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.38, C:0.16, G:0.22, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAATAATATGAAATATGA
Found at i:21893947 original size:16 final size:16
Alignment explanation
Indices: 21893928--21893959 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
21893918 AATTGTTTTA
21893928 TTACAAAATTTCACTT
1 TTACAAAATTTCACTT
*
21893944 TTACATAATTTCACTT
1 TTACAAAATTTCACTT
21893960 CATTTTATCT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.34, C:0.19, G:0.00, T:0.47
Consensus pattern (16 bp):
TTACAAAATTTCACTT
Found at i:21894374 original size:50 final size:50
Alignment explanation
Indices: 21894154--21894541 Score: 350
Period size: 50 Copynumber: 7.7 Consensus size: 50
21894144 ACCGAAGCTC
* * *
21894154 TCTGGTACGCATAGTACCCTGCACTTAGTACTACACATGCGACCTATCAA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAA
* ** * * * *
21894204 TCTGGTACACGTAGTAGCCT-AAAATAGTACTAGACATGTGACATAACAA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAA
** * * * * * ** *
21894253 TCTAATACATGTAGTAGCCTACACTTATTACTACACACGAGATCAAAGTTAA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGCGA-CCTA-TCAA
* * * *
21894305 -CGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCAACCTATCAA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAA
* * * * * *
21894354 TCTGGTACACGTAGTAGCCTGCACTTAGTACAACACACGTGACTTAACCA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAA
* * * * * ** *
21894404 TTTGATACACGTAGTAGCCTACACTTAGTACTACACACGTGATCGAAGTTAA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGCGA-CCTA-TCAA
* * *
21894456 T-GGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAA
21894505 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACA
21894542 CGTGACTCAC
Statistics
Matches: 262, Mismatches: 69, Indels: 14
0.76 0.20 0.04
Matches are distributed among these distances:
49 46 0.18
50 144 0.55
51 68 0.26
52 4 0.02
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.26
Consensus pattern (50 bp):
TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAA
Found at i:21894462 original size:101 final size:101
Alignment explanation
Indices: 21894357--21894546 Score: 281
Period size: 101 Copynumber: 1.9 Consensus size: 101
21894347 CTATCAATCT
* * * * *
21894357 GGTACACGTAGTAGCCTGCACTTAGTACAACACACGTGACTTAACCATTTGATACACGTAGTAGC
1 GGTACACATAGTAGCCTGCACTTAGTACAACACACGCGACCTAACAATCTGATACACGTAGTAGC
21894422 CTACACTTAGTACTACACACGTGATCGAAGTTAATG
66 CTACACTTAGTACTACACACGTGATCGAAGTTAATG
* * * * *
21894458 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGC
1 GGTACACATAGTAGCCTGCACTTAGTACAACACACGCGACCTAACAATCTGATACACGTAGTAGC
*
21894523 CTGCACTTAGTACTACACACGTGA
66 CTACACTTAGTACTACACACGTGA
21894547 CTCACAATGA
Statistics
Matches: 78, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
101 78 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.25
Consensus pattern (101 bp):
GGTACACATAGTAGCCTGCACTTAGTACAACACACGCGACCTAACAATCTGATACACGTAGTAGC
CTACACTTAGTACTACACACGTGATCGAAGTTAATG
Found at i:21894469 original size:151 final size:151
Alignment explanation
Indices: 21894157--21894548 Score: 624
Period size: 151 Copynumber: 2.6 Consensus size: 151
21894147 GAAGCTCTCT
*
21894157 GGTACGCATAGTACCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGC
* ** * * * * *
21894222 CT-AAAATAGTACTAGACATGTGACATAACAATCTAATACATGTAGTAGCCTACACTTATTACTA
66 CTGCACTTAGTACTACACACGTGACTTAACAATCTAATACACGTAGTAGCCTACACTTAGTACTA
21894286 CACACGAGATCAAAGTTAACG
131 CACACGAGATCAAAGTTAACG
*
21894307 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCAACCTATCAATCTGGTACACGTAGTAGC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGC
* * * *
21894372 CTGCACTTAGTACAACACACGTGACTTAACCATTTGATACACGTAGTAGCCTACACTTAGTACTA
66 CTGCACTTAGTACTACACACGTGACTTAACAATCTAATACACGTAGTAGCCTACACTTAGTACTA
* * *
21894437 CACACGTGATCGAAGTTAATG
131 CACACGAGATCAAAGTTAACG
21894458 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGC
21894523 CTGCACTTAGTACTACACACGTGACT
66 CTGCACTTAGTACTACACACGTGACT
21894549 CACAATGACT
Statistics
Matches: 222, Mismatches: 19, Indels: 1
0.92 0.08 0.00
Matches are distributed among these distances:
150 65 0.29
151 157 0.71
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.26
Consensus pattern (151 bp):
GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGC
CTGCACTTAGTACTACACACGTGACTTAACAATCTAATACACGTAGTAGCCTACACTTAGTACTA
CACACGAGATCAAAGTTAACG
Found at i:21894924 original size:19 final size:20
Alignment explanation
Indices: 21894896--21894942 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
21894886 AAGAACAAGT
21894896 TATATCATCAAAATAATCACA
1 TATAT-ATCAAAATAATCACA
* *
21894917 TA-ATATCAAATTATTCACA
1 TATATATCAAAATAATCACA
21894936 TATATAT
1 TATATAT
21894943 ACTTACAACT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
19 15 0.65
20 6 0.26
21 2 0.09
ACGTcount: A:0.49, C:0.15, G:0.00, T:0.36
Consensus pattern (20 bp):
TATATATCAAAATAATCACA
Found at i:21897710 original size:30 final size:29
Alignment explanation
Indices: 21897667--21897731 Score: 71
Period size: 30 Copynumber: 2.2 Consensus size: 29
21897657 ATAATCATAC
21897667 TAGTCCATATATTTCA-T-TTTTTTCACATTT
1 TAGTCCATATATTT-ATTATTTTTTCA-A-TT
* *
21897697 TAGTCCCTTTATTTATTATTTTTTCAATT
1 TAGTCCATATATTTATTATTTTTTCAATT
21897726 TAGTCC
1 TAGTCC
21897732 TAATTACTCA
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
29 9 0.29
30 14 0.45
31 8 0.26
ACGTcount: A:0.22, C:0.17, G:0.05, T:0.57
Consensus pattern (29 bp):
TAGTCCATATATTTATTATTTTTTCAATT
Found at i:21900610 original size:23 final size:23
Alignment explanation
Indices: 21900582--21900627 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
21900572 ATCACGAGAG
21900582 TAGATCAATATATCATCAATGAA
1 TAGATCAATATATCATCAATGAA
*
21900605 TAGATCAATATATCATCAGTGAA
1 TAGATCAATATATCATCAATGAA
21900628 CACAACTACA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.46, C:0.13, G:0.11, T:0.30
Consensus pattern (23 bp):
TAGATCAATATATCATCAATGAA
Found at i:21909131 original size:30 final size:30
Alignment explanation
Indices: 21909096--21909175 Score: 90
Period size: 30 Copynumber: 2.7 Consensus size: 30
21909086 CAAGAAAACT
*
21909096 GAATAAAGAAATCCAAGATAGAGAAACCCA
1 GAATAAAGAAATCCAAGATAAAGAAACCCA
* * *
21909126 GAATAACGAAATCC-AGAATAAAGAGATCCA
1 GAATAAAGAAATCCAAG-ATAAAGAAACCCA
* *
21909156 GGATAAAGAAACCCAAGATA
1 GAATAAAGAAATCCAAGATA
21909176 TGATACTATG
Statistics
Matches: 41, Mismatches: 7, Indels: 4
0.79 0.13 0.08
Matches are distributed among these distances:
29 2 0.05
30 37 0.90
31 2 0.05
ACGTcount: A:0.55, C:0.16, G:0.17, T:0.11
Consensus pattern (30 bp):
GAATAAAGAAATCCAAGATAAAGAAACCCA
Found at i:21909136 original size:15 final size:15
Alignment explanation
Indices: 21909096--21909170 Score: 71
Period size: 15 Copynumber: 5.0 Consensus size: 15
21909086 CAAGAAAACT
*
21909096 GAATAAAGAAATCCA
1 GAATAAAGAAACCCA
*
21909111 -AGATAGAGAAACCCA
1 GA-ATAAAGAAACCCA
* *
21909126 GAATAACGAAATCCA
1 GAATAAAGAAACCCA
* *
21909141 GAATAAAGAGATCCA
1 GAATAAAGAAACCCA
*
21909156 GGATAAAGAAACCCA
1 GAATAAAGAAACCCA
21909171 AGATATGATA
Statistics
Matches: 48, Mismatches: 10, Indels: 4
0.77 0.16 0.06
Matches are distributed among these distances:
14 1 0.02
15 46 0.96
16 1 0.02
ACGTcount: A:0.55, C:0.17, G:0.17, T:0.11
Consensus pattern (15 bp):
GAATAAAGAAACCCA
Found at i:21912255 original size:46 final size:45
Alignment explanation
Indices: 21912108--21912247 Score: 115
Period size: 46 Copynumber: 3.1 Consensus size: 45
21912098 GTAACCCGCC
* * *
21912108 CATAAGTGAACTCAGACTCAACTCAACGAGCTT-GG-ATGCCTAGTTA
1 CATAAGTGAACTCGGACTCAACTCAACGAG-TTCGGAATGCCCA--AA
*** * * **
21912154 CATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATC
1 CATAAGT-GAACTCGGACTCAACTCAACGAGTTCGGA-ATGCCCAAA
*
21912201 CATAAGTGAACTTGGACTCAACTCAACGAGTTCGG-ATGCCCAAA
1 CATAAGTGAACTCGGACTCAACTCAACGAGTTCGGAATGCCCAAA
21912245 CAT
1 CAT
21912248 CCTAGTGACA
Statistics
Matches: 74, Mismatches: 16, Indels: 10
0.74 0.16 0.10
Matches are distributed among these distances:
44 8 0.11
46 33 0.45
47 29 0.39
49 4 0.05
ACGTcount: A:0.31, C:0.28, G:0.19, T:0.23
Consensus pattern (45 bp):
CATAAGTGAACTCGGACTCAACTCAACGAGTTCGGAATGCCCAAA
Found at i:21928088 original size:16 final size:16
Alignment explanation
Indices: 21928067--21928101 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
21928057 GTTTACAGCA
*
21928067 TGATAGTATGATTTTG
1 TGATAGTATGATTGTG
21928083 TGATAGTATGATTGTG
1 TGATAGTATGATTGTG
21928099 TGA
1 TGA
21928102 AATTTTCATT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.26, C:0.00, G:0.29, T:0.46
Consensus pattern (16 bp):
TGATAGTATGATTGTG
Found at i:21932398 original size:48 final size:47
Alignment explanation
Indices: 21932240--21932425 Score: 176
Period size: 48 Copynumber: 3.9 Consensus size: 47
21932230 ACAATTGGGT
* * *
21932240 GACATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCAC
1 GACATGAGAGCTAGTGTAAGACCATGTCT-GGACATGGCATCGGCCTC
* * * * * * *
21932288 -ATTATGAGAGCCAGTGTAAGGCCATGCCTGAGACATGGCATTGGCATT
1 GA-CATGAGAGCTAGTGTAAGACCATGTCTG-GACATGGCATCGGCCTC
* * * *
21932336 GAGACGAGATCTAGTGTAAGACCATGTATAGGACATGGCATCGGCCTC
1 GACATGAGAGCTAGTGTAAGACCATGTCT-GGACATGGCATCGGCCTC
**
21932384 GACATGTTAGCTAGTGTAAGACCATGTCTGGAACATGGCATC
1 GACATGAGAGCTAGTGTAAGACCATGTCTGG-ACATGGCATC
21932426 TGTAATTTAC
Statistics
Matches: 107, Mismatches: 26, Indels: 10
0.75 0.18 0.07
Matches are distributed among these distances:
47 4 0.04
48 101 0.94
49 2 0.02
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (47 bp):
GACATGAGAGCTAGTGTAAGACCATGTCTGGACATGGCATCGGCCTC
Found at i:21932420 original size:96 final size:96
Alignment explanation
Indices: 21932250--21932424 Score: 237
Period size: 96 Copynumber: 1.8 Consensus size: 96
21932240 GACATGTGTG
* * * *
21932250 CTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATTATGAGAGCCAGTGTAAGGCCATGC
1 CTAGTGTAAGACCATGTATAGGACATGGCATCGGCCACATCATGAGAGCCAGTGTAAGACCATGC
21932315 CTGAGACATGGCATTGGCATTGAGACGAGAT
66 CTGAGACATGGCATTGGCATTGAGACGAGAT
* ** *
21932346 CTAGTGTAAGACCATGTATAGGACATGGCATCGGCCTCGA-CATGTTAGCTAGTGTAAGACCATG
1 CTAGTGTAAGACCATGTATAGGACATGGCATCGGCCAC-ATCATGAGAGCCAGTGTAAGACCATG
*
21932410 TCTG-GAACATGGCAT
65 CCTGAG-ACATGGCAT
21932425 CTGTAATTTA
Statistics
Matches: 68, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
95 1 0.01
96 66 0.97
97 1 0.01
ACGTcount: A:0.27, C:0.21, G:0.29, T:0.23
Consensus pattern (96 bp):
CTAGTGTAAGACCATGTATAGGACATGGCATCGGCCACATCATGAGAGCCAGTGTAAGACCATGC
CTGAGACATGGCATTGGCATTGAGACGAGAT
Found at i:21946983 original size:20 final size:19
Alignment explanation
Indices: 21946938--21946984 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 19
21946928 CAATATGTTC
* * *
21946938 ATATTTTAAGTGCACTTTC
1 ATATTTTAAGTGAACATTA
21946957 ATATTTTAAGTGAACATTA
1 ATATTTTAAGTGAACATTA
21946976 ATTATTTTA
1 A-TATTTTA
21946985 TAAAAATTAA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
19 17 0.71
20 7 0.29
ACGTcount: A:0.34, C:0.09, G:0.09, T:0.49
Consensus pattern (19 bp):
ATATTTTAAGTGAACATTA
Found at i:21947928 original size:18 final size:18
Alignment explanation
Indices: 21947902--21947958 Score: 105
Period size: 18 Copynumber: 3.2 Consensus size: 18
21947892 AATATTTCAA
21947902 ACCTAACACGCCCCTGTT
1 ACCTAACACGCCCCTGTT
*
21947920 ACCTCACACGCCCCTGTT
1 ACCTAACACGCCCCTGTT
21947938 ACCTAACACGCCCCTGTT
1 ACCTAACACGCCCCTGTT
21947956 ACC
1 ACC
21947959 CTGATTAAAT
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 37 1.00
ACGTcount: A:0.21, C:0.47, G:0.11, T:0.21
Consensus pattern (18 bp):
ACCTAACACGCCCCTGTT
Found at i:21948561 original size:21 final size:21
Alignment explanation
Indices: 21948522--21948562 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
21948512 TTAAAAAATG
*
21948522 GTTAATAGTGTAAAGTGAAAA
1 GTTAATAGTGTAAAATGAAAA
21948543 GTTAATAGT-TAAAAATGAAA
1 GTTAATAGTGT-AAAATGAAA
21948563 GTGCTTAATT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 1 0.06
21 17 0.94
ACGTcount: A:0.51, C:0.00, G:0.20, T:0.29
Consensus pattern (21 bp):
GTTAATAGTGTAAAATGAAAA
Found at i:21949660 original size:43 final size:43
Alignment explanation
Indices: 21949598--21949782 Score: 253
Period size: 43 Copynumber: 4.3 Consensus size: 43
21949588 CATAGGATTT
* *
21949598 TCGATATGTGATTATGTGTAAGACCACGTCTGGGATGTTGGCA
1 TCGATATGTGATTACGTGTAAGACCACGTCTGGGACGTTGGCA
* * * **
21949641 TCGATATGTGATTACGTGTAAGACCATGTCTGCGACATTGTTA
1 TCGATATGTGATTACGTGTAAGACCACGTCTGGGACGTTGGCA
* *
21949684 TCGATATGTGATTACGTGTAAGACCACGTCTAGGATGTTGGCA
1 TCGATATGTGATTACGTGTAAGACCACGTCTGGGACGTTGGCA
* * *
21949727 TCGGTATGTGATTACGTGTAAGACCACATCTGGGACGTTGGGA
1 TCGATATGTGATTACGTGTAAGACCACGTCTGGGACGTTGGCA
*
21949770 TCAATATGTGATT
1 TCGATATGTGATT
21949783 CTGATATGTG
Statistics
Matches: 121, Mismatches: 21, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
43 121 1.00
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.32
Consensus pattern (43 bp):
TCGATATGTGATTACGTGTAAGACCACGTCTGGGACGTTGGCA
Found at i:21949821 original size:56 final size:56
Alignment explanation
Indices: 21949761--21950072 Score: 448
Period size: 56 Copynumber: 5.6 Consensus size: 56
21949751 CACATCTGGG
* * * *
21949761 ACGTTGGGATCAATATGTGATTCTGATATGTGTTTGCGAGTAAGACCACATTTAAT
1 ACGTTGGCATCGATATGTGATTCTGATATGTGTGTGCGAGTAAGACCACGTTTAAT
** *
21949817 ACGTTGGCATCGATATGTGATTCCAATATGTGTGTGGGAGTAAGACCACGTTTAAT
1 ACGTTGGCATCGATATGTGATTCTGATATGTGTGTGCGAGTAAGACCACGTTTAAT
* *
21949873 GCGTTGGCATCGATATGTGATTTTGATATGTGTGTGCGAGTAAGACCACGTTTAAT
1 ACGTTGGCATCGATATGTGATTCTGATATGTGTGTGCGAGTAAGACCACGTTTAAT
* * **
21949929 ACTTTGGCATCGATATGTGATTCCGATATGTGTGTGTTAGTAAGACCACGTTTAAT
1 ACGTTGGCATCGATATGTGATTCTGATATGTGTGTGCGAGTAAGACCACGTTTAAT
* *
21949985 ACGTTGGCATCGATATGTGATTGC-GATATATGTGTGCAAGTAAGACCACGTTTAAT
1 ACGTTGGCATCGATATGTGATT-CTGATATGTGTGTGCGAGTAAGACCACGTTTAAT
* *
21950041 ACATTGG-ATCGATAGGTGATTCTGATATGTGT
1 ACGTTGGCATCGATATGTGATTCTGATATGTGT
21950073 TTACAAGTAA
Statistics
Matches: 229, Mismatches: 25, Indels: 5
0.88 0.10 0.02
Matches are distributed among these distances:
54 1 0.00
55 21 0.09
56 206 0.90
57 1 0.00
ACGTcount: A:0.26, C:0.13, G:0.26, T:0.35
Consensus pattern (56 bp):
ACGTTGGCATCGATATGTGATTCTGATATGTGTGTGCGAGTAAGACCACGTTTAAT
Found at i:21952120 original size:18 final size:18
Alignment explanation
Indices: 21952076--21952121 Score: 74
Period size: 18 Copynumber: 2.6 Consensus size: 18
21952066 CTTGGCCCAA
21952076 TGCAGTAACAGTAATCAG
1 TGCAGTAACAGTAATCAG
*
21952094 TGCAATAACAGTAATCAG
1 TGCAGTAACAGTAATCAG
*
21952112 TGTAGTAACA
1 TGCAGTAACA
21952122 ATTTAAACAG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.41, C:0.15, G:0.20, T:0.24
Consensus pattern (18 bp):
TGCAGTAACAGTAATCAG
Found at i:21952538 original size:27 final size:27
Alignment explanation
Indices: 21952470--21952595 Score: 173
Period size: 27 Copynumber: 4.7 Consensus size: 27
21952460 CATCACACAG
* *
21952470 GGGCAAAACAGTCATCTTACCATATAA
1 GGGCAAAACAGTCATTTTACCACATAA
* *
21952497 -GGAAAAATAGTCATTTTACCACATAA
1 GGGCAAAACAGTCATTTTACCACATAA
*
21952523 GGGCAAAACAATCATTTTACCACATAA
1 GGGCAAAACAGTCATTTTACCACATAA
*
21952550 TGGCAAAACAGTCATTTTACCACATAA
1 GGGCAAAACAGTCATTTTACCACATAA
* *
21952577 GGGTAAAATAGTCATTTTA
1 GGGCAAAACAGTCATTTTA
21952596 TCGATTAGGG
Statistics
Matches: 86, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
26 22 0.26
27 64 0.74
ACGTcount: A:0.42, C:0.18, G:0.13, T:0.26
Consensus pattern (27 bp):
GGGCAAAACAGTCATTTTACCACATAA
Found at i:21954281 original size:13 final size:14
Alignment explanation
Indices: 21954253--21954285 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
21954243 CATTTCGACC
*
21954253 ATGTTTATATTTAT
1 ATGTTTATATTGAT
21954267 ATGTTT-TATTGAT
1 ATGTTTATATTGAT
21954280 ATGTTT
1 ATGTTT
21954286 GTTTTTGATT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 12 0.67
14 6 0.33
ACGTcount: A:0.24, C:0.00, G:0.12, T:0.64
Consensus pattern (14 bp):
ATGTTTATATTGAT
Found at i:21957111 original size:85 final size:85
Alignment explanation
Indices: 21956968--21957146 Score: 358
Period size: 85 Copynumber: 2.1 Consensus size: 85
21956958 GGCCGGCCAT
21956968 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
21957033 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
21957053 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
21957118 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
21957138 GAGCATGGG
1 GAGCATGGG
21957147 CAATAAAATA
Statistics
Matches: 94, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
85 94 1.00
ACGTcount: A:0.38, C:0.08, G:0.27, T:0.26
Consensus pattern (85 bp):
GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
GTAAGGATTAATAAAATAAA
Found at i:21958510 original size:40 final size:40
Alignment explanation
Indices: 21958314--21958496 Score: 214
Period size: 40 Copynumber: 4.6 Consensus size: 40
21958304 GAATGATGTT
* * * *
21958314 CGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAAC
* *
21958354 CGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-ATTC
1 CGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-AC
*
21958394 CGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-C
*
21958433 CGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAAC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAAC
*
21958473 CGGGCTATGTCCCGAAGGCATTTG
1 CGGGCTAAGTCCCGAAGGCATTTG
21958497 AACGAGTAGC
Statistics
Matches: 125, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
39 35 0.28
40 80 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAAC
Found at i:21958525 original size:79 final size:79
Alignment explanation
Indices: 21958365--21958529 Score: 210
Period size: 79 Copynumber: 2.1 Consensus size: 79
21958355 GGACTAAGAT
* **
21958365 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
* *
21958430 ATCCGGGTTAAGTC
66 ATCCGGGTAAAATC
* *
21958444 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
*
21958507 TATATCC-GGTAAAATC
63 TAAATCCGGGTAAAATC
21958523 CCGAAGG
1 CCGAAGG
21958530 TACGTGATTC
Statistics
Matches: 75, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
78 2 0.03
79 49 0.65
80 24 0.32
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTAAAATC
Found at i:21960294 original size:65 final size:65
Alignment explanation
Indices: 21960219--21960349 Score: 253
Period size: 65 Copynumber: 2.0 Consensus size: 65
21960209 AGTCCCATGC
21960219 ATCAGATAATAATAACATGGCATGCAGTAAATAGTAACAGTCAAACATGCATTCAGGTCAACCTT
1 ATCAGATAATAATAACATGGCATGCAGTAAATAGTAACAGTCAAACATGCATTCAGGTCAACCTT
*
21960284 ATCAGATAATAATAACATGGCATGCAGTAAATAGTAATAGTCAAACATGCATTCAGGTCAACCTT
1 ATCAGATAATAATAACATGGCATGCAGTAAATAGTAACAGTCAAACATGCATTCAGGTCAACCTT
21960349 A
1 A
21960350 ACCCTAGGGG
Statistics
Matches: 65, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
65 65 1.00
ACGTcount: A:0.42, C:0.18, G:0.15, T:0.25
Consensus pattern (65 bp):
ATCAGATAATAATAACATGGCATGCAGTAAATAGTAACAGTCAAACATGCATTCAGGTCAACCTT
Found at i:21960331 original size:30 final size:30
Alignment explanation
Indices: 21960232--21960332 Score: 82
Period size: 30 Copynumber: 3.2 Consensus size: 30
21960222 AGATAATAAT
*
21960232 AACATGGCATGCAGTAAATAGTAACAGTCA
1 AACATGGCATGCAGTAAATAGTAATAGTCA
* *
21960262 AACAT-GCATTCAGGTCAACCTTATCAGATAATAAT--
1 AACATGGCATGCA-GT-AA----AT-AG-TAATAGTCA
21960297 AACATGGCATGCAGTAAATAGTAATAGTCA
1 AACATGGCATGCAGTAAATAGTAATAGTCA
21960327 AACATG
1 AACATG
21960333 CATTCAGGTC
Statistics
Matches: 55, Mismatches: 5, Indels: 22
0.67 0.06 0.27
Matches are distributed among these distances:
28 6 0.11
29 8 0.15
30 15 0.27
31 2 0.04
34 2 0.04
35 9 0.16
36 8 0.15
37 5 0.09
ACGTcount: A:0.43, C:0.17, G:0.17, T:0.24
Consensus pattern (30 bp):
AACATGGCATGCAGTAAATAGTAATAGTCA
Found at i:21960673 original size:16 final size:15
Alignment explanation
Indices: 21960654--21960700 Score: 62
Period size: 16 Copynumber: 3.1 Consensus size: 15
21960644 ACTTATTGCC
21960654 TATTTTTTATATTA-
1 TATTTTTTATATTAT
21960668 TATATTTTTATTATTAT
1 TAT-TTTTTA-TATTAT
21960685 TATTTTTTAT-TTAT
1 TATTTTTTATATTAT
21960699 TA
1 TA
21960701 ACCAGTATGA
Statistics
Matches: 30, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
14 9 0.30
15 7 0.23
16 11 0.37
17 3 0.10
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (15 bp):
TATTTTTTATATTAT
Found at i:21963528 original size:16 final size:16
Alignment explanation
Indices: 21963507--21963538 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
21963497 CGTTTCTATG
21963507 ATCATTGCTTCGTGTT
1 ATCATTGCTTCGTGTT
21963523 ATCATTGCTTCGTGTT
1 ATCATTGCTTCGTGTT
21963539 CTTTAAAGCC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.12, C:0.19, G:0.19, T:0.50
Consensus pattern (16 bp):
ATCATTGCTTCGTGTT
Found at i:21964296 original size:43 final size:43
Alignment explanation
Indices: 21964214--21964296 Score: 116
Period size: 43 Copynumber: 1.9 Consensus size: 43
21964204 TGAGACATCC
* *
21964214 TATAAGACCATGTCTAGGACACAGGCCTCGATTTAGATTTACG
1 TATAAGACCATGTCTAGGACACAGGCATCGATCTAGATTTACG
21964257 TATAAGACCATGTCTAGGACATC-GGCATCGTATCT-GATTT
1 TATAAGACCATGTCTAGGACA-CAGGCATCG-ATCTAGATTT
21964297 TGTTTAAGAC
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
43 32 0.89
44 4 0.11
ACGTcount: A:0.29, C:0.20, G:0.20, T:0.30
Consensus pattern (43 bp):
TATAAGACCATGTCTAGGACACAGGCATCGATCTAGATTTACG
Found at i:21967625 original size:43 final size:43
Alignment explanation
Indices: 21967573--21967928 Score: 482
Period size: 43 Copynumber: 8.3 Consensus size: 43
21967563 AATAGGATTT
* *
21967573 TCGATATGTGATTACGTGTAAGACCATGTCTAGGACATTGGCA
1 TCGATATGTGATTACGTGTAAGACCACGTCTAGGACGTTGGCA
* * * *
21967616 TCGGTATGTGATTACATGTAAGACTA-GTCTAGGACATTGGCA
1 TCGATATGTGATTACGTGTAAGACCACGTCTAGGACGTTGGCA
21967658 TCGATATGTGATTACGTGTAAGACCACGTCTAGGACGTTGGCA
1 TCGATATGTGATTACGTGTAAGACCACGTCTAGGACGTTGGCA
* * *
21967701 TCGGTATGTGATTACATGTAAGACCACGTCTAGTACGTTGGCA
1 TCGATATGTGATTACGTGTAAGACCACGTCTAGGACGTTGGCA
* * *
21967744 TCGATATGTGATTACATGTAAGACCATGTCTGGGACGTTGGCA
1 TCGATATGTGATTACGTGTAAGACCACGTCTAGGACGTTGGCA
* * * *
21967787 TCGATATGTGATTATGTGTAAGACCACGTCTGGGATGTTAGCA
1 TCGATATGTGATTACGTGTAAGACCACGTCTAGGACGTTGGCA
* * * *
21967830 TTGATATGTGATTACGTGTAAGACCAAGTCTGGGACATTGGCA
1 TCGATATGTGATTACGTGTAAGACCACGTCTAGGACGTTGGCA
* *
21967873 TCAATATGTGATTACGTGTAAGACCATGTCT-GAGACGTTGGCA
1 TCGATATGTGATTACGTGTAAGACCACGTCTAG-GACGTTGGCA
*
21967916 TCAATATGTGATT
1 TCGATATGTGATT
21967929 TCGATATGTG
Statistics
Matches: 282, Mismatches: 29, Indels: 4
0.90 0.09 0.01
Matches are distributed among these distances:
42 40 0.14
43 242 0.86
ACGTcount: A:0.27, C:0.16, G:0.26, T:0.31
Consensus pattern (43 bp):
TCGATATGTGATTACGTGTAAGACCACGTCTAGGACGTTGGCA
Found at i:21967967 original size:56 final size:56
Alignment explanation
Indices: 21967907--21968177 Score: 303
Period size: 56 Copynumber: 4.8 Consensus size: 56
21967897 CATGTCTGAG
* * * * *
21967907 ACGTTGGCATCAATATGTGATTTCGATATGTGTGTGCGAGTAACACCATATTGAAT
1 ACGTTGGCATCGATATGTGATTTCGATATGTGTGTGTGAGTAAGACCACATTTAAT
* * * *
21967963 ACGTTGGCACCGATATGTGATTCCGATATGTATGTGTGAGTAAGACCACGTTTAAT
1 ACGTTGGCATCGATATGTGATTTCGATATGTGTGTGTGAGTAAGACCACATTTAAT
* * * *
21968019 ATGTCGGCATCGATATGTGA-TTCTGATATGCGTGTGTGAGTAAGACCACGTTTAAT
1 ACGTTGGCATCGATATGTGATTTC-GATATGTGTGTGTGAGTAAGACCACATTTAAT
* * * * * *
21968075 ACATTGGCATTGATATGTGATTCCGATATGTGTGAGTGAGAAAGACCACACTTAAT
1 ACGTTGGCATCGATATGTGATTTCGATATGTGTGTGTGAGTAAGACCACATTTAAT
* * **
21968131 ACGTTGGCATCGATATGTAATTCTC-ATATGTGTTTACGAGTAAGACC
1 ACGTTGGCATCGATATGTGATT-TCGATATGTGTGTGTGAGTAAGACC
21968178 CTATTTGGGA
Statistics
Matches: 178, Mismatches: 34, Indels: 6
0.82 0.16 0.03
Matches are distributed among these distances:
55 2 0.01
56 173 0.97
57 3 0.02
ACGTcount: A:0.28, C:0.15, G:0.24, T:0.33
Consensus pattern (56 bp):
ACGTTGGCATCGATATGTGATTTCGATATGTGTGTGTGAGTAAGACCACATTTAAT
Found at i:21968172 original size:112 final size:112
Alignment explanation
Indices: 21967907--21968177 Score: 337
Period size: 112 Copynumber: 2.4 Consensus size: 112
21967897 CATGTCTGAG
* * * *
21967907 ACGTTGGCATCAATATGTGATT-TCGATATGTGTGTGCGAGTAACACCATATTGAATACGTTGGC
1 ACGTTGGCATCGATATGTGATTCTC-ATATGTGTGTGCGAGTAAGACCACATTGAATACATTGGC
* * **
21967971 ACCGATATGTGATTCCGATATGTATGTGTGAGTAAGACCACGTTTAAT
65 ACCGATATGTGATTCCGATATGTATGAGTGAGAAAGACCACACTTAAT
* * * * * * *
21968019 ATGTCGGCATCGATATGTGATTCTGATATGCGTGTGTGAGTAAGACCACGTTTAATACATTGGCA
1 ACGTTGGCATCGATATGTGATTCTCATATGTGTGTGCGAGTAAGACCACATTGAATACATTGGCA
** *
21968084 TTGATATGTGATTCCGATATGTGTGAGTGAGAAAGACCACACTTAAT
66 CCGATATGTGATTCCGATATGTATGAGTGAGAAAGACCACACTTAAT
* * *
21968131 ACGTTGGCATCGATATGTAATTCTCATATGTGTTTACGAGTAAGACC
1 ACGTTGGCATCGATATGTGATTCTCATATGTGTGTGCGAGTAAGACC
21968178 CTATTTGGGA
Statistics
Matches: 132, Mismatches: 26, Indels: 2
0.82 0.16 0.01
Matches are distributed among these distances:
112 131 0.99
113 1 0.01
ACGTcount: A:0.28, C:0.15, G:0.24, T:0.33
Consensus pattern (112 bp):
ACGTTGGCATCGATATGTGATTCTCATATGTGTGTGCGAGTAAGACCACATTGAATACATTGGCA
CCGATATGTGATTCCGATATGTATGAGTGAGAAAGACCACACTTAAT
Found at i:21974856 original size:12 final size:12
Alignment explanation
Indices: 21974835--21974863 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
21974825 GCAATTTCTT
21974835 TTTC-AAGTATG
1 TTTCAAAGTATG
21974846 TTTCAAAGTATG
1 TTTCAAAGTATG
21974858 TTTCAA
1 TTTCAA
21974864 TCATTTCTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
11 4 0.24
12 13 0.76
ACGTcount: A:0.31, C:0.10, G:0.14, T:0.45
Consensus pattern (12 bp):
TTTCAAAGTATG
Found at i:21979013 original size:30 final size:30
Alignment explanation
Indices: 21978977--21979037 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
21978967 ATTCCCGAGC
21978977 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
1 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
* * * *
21979007 TAGGGGCAAAATTGTAATTTTGCCAAAGTT
1 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
21979037 T
1 T
21979038 GAGTTAAGGA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.38, C:0.08, G:0.25, T:0.30
Consensus pattern (30 bp):
TAGGGGCAAAAGTGTAAATATGCAAAAGTT
Found at i:21980001 original size:50 final size:50
Alignment explanation
Indices: 21979945--21980044 Score: 200
Period size: 50 Copynumber: 2.0 Consensus size: 50
21979935 TCACCATGTG
21979945 TACAAGAGAGCCGAACTATATGATGGGTGGAGCTATGTGCTGAAACCACC
1 TACAAGAGAGCCGAACTATATGATGGGTGGAGCTATGTGCTGAAACCACC
21979995 TACAAGAGAGCCGAACTATATGATGGGTGGAGCTATGTGCTGAAACCACC
1 TACAAGAGAGCCGAACTATATGATGGGTGGAGCTATGTGCTGAAACCACC
21980045 AAGTATCGAG
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
50 50 1.00
ACGTcount: A:0.32, C:0.20, G:0.28, T:0.20
Consensus pattern (50 bp):
TACAAGAGAGCCGAACTATATGATGGGTGGAGCTATGTGCTGAAACCACC
Found at i:21983396 original size:32 final size:32
Alignment explanation
Indices: 21983349--21983412 Score: 92
Period size: 32 Copynumber: 2.0 Consensus size: 32
21983339 TAATGTTTAA
*
21983349 ATAAGAAAGGCTCATCCCAATGATGTCATCCT
1 ATAAGAAAGGCTCATCCCAATAATGTCATCCT
** *
21983381 ATAAGAAAGTTTCATCCCAATAATGTCCTCCT
1 ATAAGAAAGGCTCATCCCAATAATGTCATCCT
21983413 TTCTTGTGTA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
32 28 1.00
ACGTcount: A:0.34, C:0.25, G:0.12, T:0.28
Consensus pattern (32 bp):
ATAAGAAAGGCTCATCCCAATAATGTCATCCT
Found at i:21984845 original size:46 final size:46
Alignment explanation
Indices: 21984788--21984963 Score: 187
Period size: 46 Copynumber: 3.8 Consensus size: 46
21984778 TATTTGGGCA
21984788 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *** * *
21984834 TCCAAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA--
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAATG
* * *
21984881 TCCGAGCTCGTTGAGTTGAGTTCAAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
21984927 CCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
21984964 GCAGGTTACA
Statistics
Matches: 104, Mismatches: 19, Indels: 14
0.76 0.14 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 65 0.62
47 29 0.28
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.22, C:0.19, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:21984943 original size:93 final size:93
Alignment explanation
Indices: 21984784--21984955 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
21984774 GGGATATTTG
* *
21984784 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCAAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAATGCCCAAACTCGTTGAG
21984849 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* * * *
21984877 GGCATCCGAGCTCGTTGAGTTGAGTTCAAGTTCACTTATGGATGCGAATGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAATGCCCAAACTCGTTGAG
*
21984942 TTGAGTCTGAGTTC
66 TTGAGTCCGAGTTC
21984956 ACTTATGGGC
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAATGCCCAAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:21991773 original size:27 final size:27
Alignment explanation
Indices: 21991743--21991920 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
21991733 ATATTGAGTC
* * * *
21991743 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
21991770 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
21991797 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
21991825 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
21991852 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
21991879 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
21991906 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
21991921 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:21991882 original size:82 final size:81
Alignment explanation
Indices: 21991764--21991919 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
21991754 TGCTATATAA
* *
21991764 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
21991829 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
21991846 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
21991910 CACTTAGTGC
65 CACTTAGTGC
21991920 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:21991934 original size:82 final size:83
Alignment explanation
Indices: 21991743--21991934 Score: 216
Period size: 82 Copynumber: 2.3 Consensus size: 83
21991733 ATATTGAGTC
* * * * *
21991743 CGCACACTCAGTGCTATATAA-TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTA
1 CGCACACTTAGTGCTGTACAATTCAATTCGCACACTTAGTGCTACATAATCAAATCGCACACTTA
*
21991807 GTGCTACATAGTCAAACT
66 GTGCAACATAGTCAAACT
* * **
21991825 CGCACACTTAGTGCCG--C-ATGGTCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACAC
1 CGCACACTTAGTGCTGTACAAT--TCAATTCGCACACTTAGTGCTA-CATAATCAAATCGCACAC
21991886 TTAGTGCAACATAGTCAAA-T
63 TTAGTGCAACATAGTCAAACT
*
21991906 CGCACACTTAGTGCTGTACAATTTAATTC
1 CGCACACTTAGTGCTGTACAATTCAATTC
21991935 CCGCGCACTT
Statistics
Matches: 91, Mismatches: 12, Indels: 14
0.78 0.10 0.12
Matches are distributed among these distances:
79 1 0.01
81 17 0.19
82 70 0.77
83 1 0.01
84 2 0.02
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.28
Consensus pattern (83 bp):
CGCACACTTAGTGCTGTACAATTCAATTCGCACACTTAGTGCTACATAATCAAATCGCACACTTA
GTGCAACATAGTCAAACT
Found at i:21996856 original size:20 final size:21
Alignment explanation
Indices: 21996819--21996857 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 21
21996809 AAATCGTGTT
21996819 TATTGATATGCTTAAATTGAA
1 TATTGATATGCTTAAATTGAA
* *
21996840 TATTG-TATGTTTGAATTG
1 TATTGATATGCTTAAATTG
21996858 TGTAAATGCC
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 11 0.69
21 5 0.31
ACGTcount: A:0.31, C:0.03, G:0.18, T:0.49
Consensus pattern (21 bp):
TATTGATATGCTTAAATTGAA
Found at i:21998226 original size:26 final size:26
Alignment explanation
Indices: 21998197--21998249 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
21998187 TGGGTAGACA
21998197 CATGCGCATGT-GTCTGGACCGTGTGT
1 CATGCGCATGTGGTCTGG-CCGTGTGT
* * *
21998223 CATGGGCGTGTGGTTTGGCCGTGTGT
1 CATGCGCATGTGGTCTGGCCGTGTGT
21998249 C
1 C
21998250 CCCTACATCT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 18 0.78
27 5 0.22
ACGTcount: A:0.08, C:0.21, G:0.40, T:0.32
Consensus pattern (26 bp):
CATGCGCATGTGGTCTGGCCGTGTGT
Found at i:22008058 original size:19 final size:20
Alignment explanation
Indices: 22008026--22008063 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
22008016 AGATTTTCGT
22008026 AATTTCTAAGAATTTGGTAA
1 AATTTCTAAGAATTTGGTAA
*
22008046 AATTTTTAA-AATTTGGTA
1 AATTTCTAAGAATTTGGTA
22008064 TTTGGTTGCG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.03, G:0.13, T:0.45
Consensus pattern (20 bp):
AATTTCTAAGAATTTGGTAA
Found at i:22010859 original size:47 final size:47
Alignment explanation
Indices: 22010785--22010938 Score: 263
Period size: 47 Copynumber: 3.3 Consensus size: 47
22010775 TCCTTCGGGA
*
22010785 CTTATCACATATATACACTTTCCCATTCATCACATCAGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCAGCCATTAGGC
** *
22010832 CTTATCACATATATACACTTTCACATTCATCACATTTGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCAGCCATTAGGC
*
22010879 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCAGCCATTAGGC
22010926 CTTATCACATATA
1 CTTATCACATATA
22010939 CATATCTTGT
Statistics
Matches: 100, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 100 1.00
ACGTcount: A:0.30, C:0.30, G:0.06, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCAGCCATTAGGC
Found at i:22012808 original size:13 final size:13
Alignment explanation
Indices: 22012790--22012814 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
22012780 TACTAAATTT
22012790 TCATGGATTCAAA
1 TCATGGATTCAAA
22012803 TCATGGATTCAA
1 TCATGGATTCAA
22012815 TATACAATTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TCATGGATTCAAA
Found at i:22018010 original size:40 final size:39
Alignment explanation
Indices: 22017948--22018171 Score: 256
Period size: 40 Copynumber: 5.6 Consensus size: 39
22017938 CGGATGATAA
* * *
22017948 CCGGGCTAAGTCCC-AAGAGCATTTGAGCTAGTGGCTAATT
1 CCGGGCTAAGTCCCGAAG-GCATTTGTGCGAGT-ACTAATT
22017988 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTAATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTAATT
* * *
22018028 TCAGGCTAAGTCCCAAAGGCATTTGTGCGAGCTACTAATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTAATT
* * *
22018068 CTGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-TTATA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTAATT
* *
22018107 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT-ATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTAAT-T
*
22018147 CCAGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
22018172 AGCTAGTGGC
Statistics
Matches: 164, Mismatches: 16, Indels: 8
0.87 0.09 0.04
Matches are distributed among these distances:
39 37 0.23
40 123 0.75
41 4 0.02
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTACTAATT
Found at i:22018194 original size:79 final size:78
Alignment explanation
Indices: 22017951--22018194 Score: 226
Period size: 79 Copynumber: 3.1 Consensus size: 78
22017941 ATGATAACCG
* * * * *
22017951 GGCTAAGTCCC-AAGAGCATTTGAGCTAG-TGGCTAATTCCGGGCTAAGTCCCGAAGGCATTTGT
1 GGCTAAGTCCCAAAG-GCATTTGTGCAAGCT-ACTAATACCAGGCTAAGTCCCGAAGGCATTTGT
* *
22018014 GCGAGCTACTAATTTCA
64 GCGAG-TACT-ATATCC
* * **
22018031 GGCTAAGTCCCAAAGGCATTTGTGCGAGCTACTAATTCTGGGCTAAGTCCCGAAGGCATTTGTGC
1 GGCTAAGTCCCAAAGGCATTTGTGCAAGCTACTAATACCAGGCTAAGTCCCGAAGGCATTTGTGC
*
22018096 GAGTTATTATA-CC
66 GAG-TACTATATCC
* * *
22018109 GGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT-ATAACCAGGCTAAGTCCCGAAGGCATTTGA
1 -GGCTAAGTCCCAAAGGCATTTGTGCAAGCTACTAAT-ACCAGGCTAAGTCCCGAAGGCATTTGT
* *
22018173 GCTAGTGGCTATATCC
64 GCGAGT-ACTATATCC
*
22018189 CGCTAA
1 GGCTAA
22018195 ACTCCGAAGG
Statistics
Matches: 139, Mismatches: 19, Indels: 13
0.81 0.11 0.08
Matches are distributed among these distances:
78 4 0.03
79 68 0.49
80 63 0.45
81 4 0.03
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (78 bp):
GGCTAAGTCCCAAAGGCATTTGTGCAAGCTACTAATACCAGGCTAAGTCCCGAAGGCATTTGTGC
GAGTACTATATCC
Found at i:22026117 original size:40 final size:39
Alignment explanation
Indices: 22026055--22026285 Score: 245
Period size: 40 Copynumber: 5.8 Consensus size: 39
22026045 CGGATGATAA
* *
22026055 CCGGGCTAAGTCCCG-AGAGCATTTGAGCTAGTGGCTAATT
1 CCGGGCTAAGTCCCGAAG-GCATTTGTGCTAGT-ACTAATT
* * *
22026095 CCAGGCTAAGTTCCGAAGGCATTTGTGCGAGCTACTAATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TACTAATT
*
22026135 CTGGGCTAAGTCCCGAAGGCATTTGTG-TGAGCTACTAATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCT-AG-TACTAATT
* * *
22026175 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-TTATA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TACTAATT
* *
22026214 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT-ATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TACTAAT-T
* *
22026254 CCGGGCTATGTCCCGAAGGCATTTGAGCTAGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGT
22026286 GGCTAAATCC
Statistics
Matches: 167, Mismatches: 18, Indels: 13
0.84 0.09 0.07
Matches are distributed among these distances:
39 39 0.23
40 125 0.75
41 3 0.02
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTACTAATT
Found at i:22026258 original size:79 final size:80
Alignment explanation
Indices: 22026054--22026278 Score: 276
Period size: 80 Copynumber: 2.8 Consensus size: 80
22026044 TCGGATGATA
* * ** * *
22026054 ACCGGGCTAAGTCCCG-AGAGCATTTGAGCTAGTGGCTAATTCCAGGCTAAGTTCCGAAGGCATT
1 ACCGGGCTAAGTCCCGAAG-GCATTTGTGCAAGTTACTAATTCCGGGCTAAGTCCCGAAGGCATT
22026118 TGTGCGAGCTACTAAT
65 TGTGCGAGCTACTAAT
* * ** *
22026134 TCTGGGCTAAGTCCCGAAGGCATTTGTGTGAGCTACTAATTCCGGGCTAAGTCCCGAAGGCATTT
1 ACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTAATTCCGGGCTAAGTCCCGAAGGCATTT
* *
22026199 GTGCGAGTTA-TTAT
66 GTGCGAGCTACTAAT
* *
22026213 ACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATT
1 ACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTAAT-TCCGGGCTAAGTCCCGAAGGCATT
22026277 TG
65 TG
22026279 AGCTAGTGGC
Statistics
Matches: 124, Mismatches: 19, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
78 2 0.02
79 59 0.48
80 61 0.49
81 2 0.02
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.27
Consensus pattern (80 bp):
ACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTAATTCCGGGCTAAGTCCCGAAGGCATTT
GTGCGAGCTACTAAT
Found at i:22026300 original size:79 final size:79
Alignment explanation
Indices: 22026053--22026301 Score: 229
Period size: 79 Copynumber: 3.1 Consensus size: 79
22026043 TTCGGATGAT
* * * * * *
22026053 AACCGGGCTAAGTCCCG-AGAGCATTTGAGCTAG-TGGCTAATTCCAGGCTAAGTTCCGAAGGCA
1 AACCGGGCTAAGTCCCGAAG-GCATTTGTGCAAGCT-ACTAATACCGGGCTAAGTCCCGAAGGCA
*
22026116 TTTGTGCGAGCT-ACTA
64 TTTGAGCGAG-TGACTA
* * ** *
22026132 ATTCTGGGCTAAGTCCCGAAGGCATTTGTGTGAGCTACTAATTCCGGGCTAAGTCCCGAAGGCAT
1 A-ACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGCTACTAATACCGGGCTAAGTCCCGAAGGCAT
* * *
22026197 TTGTGCGAGTTATTA
65 TTGAGCGAGTGACTA
* * *
22026212 TACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT-ATAACCGGGCTATGTCCCGAAGGCAT
1 AACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGCTACTAAT-ACCGGGCTAAGTCCCGAAGGCAT
* *
22026276 TTGAGCTAGTGGCTA
65 TTGAGCGAGTGACTA
22026291 AATCC-GGCTAA
1 AA-CCGGGCTAA
22026302 ACTCCGAAGG
Statistics
Matches: 141, Mismatches: 23, Indels: 12
0.80 0.13 0.07
Matches are distributed among these distances:
78 2 0.01
79 72 0.51
80 64 0.45
81 3 0.02
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.26
Consensus pattern (79 bp):
AACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGCTACTAATACCGGGCTAAGTCCCGAAGGCATT
TGAGCGAGTGACTA
Found at i:22031402 original size:46 final size:45
Alignment explanation
Indices: 22031346--22031435 Score: 108
Period size: 46 Copynumber: 2.0 Consensus size: 45
22031336 TCGCTCCCTT
* * *
22031346 GAATTCCCTGTTACGCTATCTGATGCTACCTGATAAAAACTCTTCA
1 GAATTACCTGTTAAGCTATATGA-GCTACCTGATAAAAACTCTTCA
* * * *
22031392 GAATTACCTGTTAAGCTGTATGAGTTTCCTGATTAAAACTCTTC
1 GAATTACCTGTTAAGCTATATGAGCTACCTGATAAAAACTCTTC
22031436 TAATTTTCCT
Statistics
Matches: 37, Mismatches: 7, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
45 18 0.49
46 19 0.51
ACGTcount: A:0.28, C:0.22, G:0.14, T:0.36
Consensus pattern (45 bp):
GAATTACCTGTTAAGCTATATGAGCTACCTGATAAAAACTCTTCA
Found at i:22037022 original size:29 final size:29
Alignment explanation
Indices: 22036906--22037045 Score: 131
Period size: 29 Copynumber: 4.9 Consensus size: 29
22036896 TGAATATAAG
* ** *
22036906 GTGATTTGGGCCTAACAGGCCATATAAAG
1 GTGAATTGGGCCTAATGGGCCATATAAAT
* * * *
22036935 GTGATTTGTGTCTAATGGGCCATATGAAT
1 GTGAATTGGGCCTAATGGGCCATATAAAT
* * * *
22036964 ATGAATTGGGCCTGATAGGCCATATGAAT
1 GTGAATTGGGCCTAATGGGCCATATAAAT
22036993 GTGAATTGGGCCTAATGGGCCATATAAAT
1 GTGAATTGGGCCTAATGGGCCATATAAAT
* *
22037022 GAG-ACTGGGCC-AAGTGGGCCATAT
1 GTGAATTGGGCCTAA-TGGGCCATAT
22037046 GCATGTATGT
Statistics
Matches: 92, Mismatches: 18, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
27 2 0.02
28 17 0.18
29 73 0.79
ACGTcount: A:0.29, C:0.15, G:0.29, T:0.27
Consensus pattern (29 bp):
GTGAATTGGGCCTAATGGGCCATATAAAT
Found at i:22038981 original size:39 final size:40
Alignment explanation
Indices: 22038938--22039105 Score: 139
Period size: 40 Copynumber: 4.2 Consensus size: 40
22038928 CTCGTTCAAG
* * * *
22038938 TGCCTTCGGGACATAGCCCGG-TTATAGTAACTCATAC-AA
1 TGCCTTCGGGACTTAACCCGGATTATA-AAACTCACACTAA
* *
22038977 TGCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACTAA
1 TGCCTTCGGGACTTAACCCGGATTATAAAACTCACACTAA
* * *
22039017 TGCCTTCGGGACTTAACCCGGAATTAGT--ATCTCGCACAAA
1 TGCCTTCGGGACTTAACCCGG-ATTA-TAAAACTCACACTAA
* * * * *
22039057 GGCCTTCGGGACTTGACCCGGAATTA-ATAACTCGCACAAA
1 TGCCTTCGGGACTTAACCCGG-ATTATAAAACTCACACTAA
22039097 TGCCTTCGG
1 TGCCTTCGG
22039106 ATCTTAGTCC
Statistics
Matches: 110, Mismatches: 13, Indels: 11
0.82 0.10 0.08
Matches are distributed among these distances:
39 26 0.24
40 80 0.73
41 3 0.03
42 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
TGCCTTCGGGACTTAACCCGGATTATAAAACTCACACTAA
Found at i:22039118 original size:40 final size:40
Alignment explanation
Indices: 22038975--22039158 Score: 196
Period size: 40 Copynumber: 4.6 Consensus size: 40
22038965 TAACTCATAC
* *
22038975 AATGCCTTCGGGACTTAACCCGGATTTTAA-AACTCGCACT
1 AATGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACA
* *
22039015 AATGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
* *
22039055 AAGGCCTTCGGGACTTGACCCGGAATTAATAACTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
** * * *
22039095 AATGCCTTC-GGATCTTAGTCCGG-ATATAGTCACTTAGCACA
1 AATGCCTTCGGGA-CTTAACCCGGAAT-TAATAAC-TCGCACA
*
22039136 AA-GCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
22039159 CAGCATTCAA
Statistics
Matches: 122, Mismatches: 16, Indels: 11
0.82 0.11 0.07
Matches are distributed among these distances:
39 8 0.07
40 103 0.84
41 11 0.09
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
Found at i:22039118 original size:80 final size:79
Alignment explanation
Indices: 22038938--22039158 Score: 220
Period size: 80 Copynumber: 2.8 Consensus size: 79
22038928 CTCGTTCAAG
* * * * * * * *
22038938 TGCCTTCGGGACATAGCCCGGTTATAGTAACTCA-TACAATGCCTTCGGGACTTAACCCGGATTT
1 TGCCTTCGGGACTTAACCCGGATATAGTCACTTAGCACAAAGCCTTCGGGACTT-ACCCGGATAT
*
22039002 TAAAACTCGCACTAA
65 TAAAACTCGCACAAA
*
22039017 TGCCTTCGGGACTTAACCCGGA-ATTAGT-A-TCTCGCACAAAGGCCTTCGGGACTTGACCCGGA
1 TGCCTTCGGGACTTAACCCGGATA-TAGTCACT-TAGCACAAA-GCCTTCGGGACTT-ACCCGGA
22039079 -ATTAATAACTCGCACAAA
62 TATTAA-AACTCGCACAAA
**
22039097 TGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 TGCCTTCGGGA-CTTAACCCGGATATAGTCACTTAGCACAAAGCCTTCGGGACTTA-CCCGGA
22039159 CAGCATTCAA
Statistics
Matches: 119, Mismatches: 13, Indels: 19
0.79 0.09 0.13
Matches are distributed among these distances:
77 1 0.01
78 2 0.02
79 35 0.29
80 70 0.59
81 10 0.08
82 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (79 bp):
TGCCTTCGGGACTTAACCCGGATATAGTCACTTAGCACAAAGCCTTCGGGACTTACCCGGATATT
AAAACTCGCACAAA
Found at i:22047066 original size:27 final size:27
Alignment explanation
Indices: 22047032--22047137 Score: 124
Period size: 27 Copynumber: 3.9 Consensus size: 27
22047022 CTGCCAGAAC
* *
22047032 AGATATTGTGACAGAGTCACCAGATAT
1 AGATATTGTGGCAGAGCCACCAGATAT
* * *
22047059 AGATATTGTGGTAGAGCCACCAGAAAC
1 AGATATTGTGGCAGAGCCACCAGATAT
22047086 AGATATTTGTGGCAGAGCCACCAGAT-T
1 AGATA-TTGTGGCAGAGCCACCAGATAT
* *
22047113 AGATATTTGTGGTAGTGCCACCAGA
1 AGATA-TTGTGGCAGAGCCACCAGA
22047138 ACGCTTCCTC
Statistics
Matches: 68, Mismatches: 10, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
27 50 0.74
28 18 0.26
ACGTcount: A:0.33, C:0.17, G:0.25, T:0.25
Consensus pattern (27 bp):
AGATATTGTGGCAGAGCCACCAGATAT
Found at i:22047117 original size:54 final size:55
Alignment explanation
Indices: 22047025--22047138 Score: 171
Period size: 55 Copynumber: 2.1 Consensus size: 55
22047015 AGCATGGCTG
*
22047025 CCAG-AACAGATATTGTGACAGAGTCACCAGATATAGATA-TTGTGGTAGAGCCA
1 CCAGAAACAGATATTGTGACAGAGCCACCAGATATAGATATTTGTGGTAGAGCCA
* *
22047078 CCAGAAACAGATATTTGTGGCAGAGCCACCAGAT-TAGATATTTGTGGTAGTGCCA
1 CCAGAAACAGATA-TTGTGACAGAGCCACCAGATATAGATATTTGTGGTAGAGCCA
22047133 CCAGAA
1 CCAGAA
22047139 CGCTTCCTCC
Statistics
Matches: 55, Mismatches: 3, Indels: 4
0.89 0.05 0.06
Matches are distributed among these distances:
53 4 0.07
54 14 0.25
55 37 0.67
ACGTcount: A:0.34, C:0.18, G:0.25, T:0.23
Consensus pattern (55 bp):
CCAGAAACAGATATTGTGACAGAGCCACCAGATATAGATATTTGTGGTAGAGCCA
Found at i:22050270 original size:29 final size:29
Alignment explanation
Indices: 22050226--22050373 Score: 158
Period size: 29 Copynumber: 5.2 Consensus size: 29
22050216 GTGAGCATGA
* *
22050226 ATAT-AAGGTGATTTGGGCCTAACGGGCC
1 ATATAAAGGTGAATTGGGCCTAATGGGCC
22050254 ATATAAAGGTGAATTGGGCCTAATGGGCC
1 ATATAAAGGTGAATTGGGCCTAATGGGCC
** ** *
22050283 ATATGGATATGAATTGGGCCTGATGGGCC
1 ATATAAAGGTGAATTGGGCCTAATGGGCC
* * *
22050312 ACATGAATGTGAATTGGGCCTAATGGGCC
1 ATATAAAGGTGAATTGGGCCTAATGGGCC
* *
22050341 ATATAAAAGAG-ATTGGGCC-AAGTGGGCC
1 ATATAAAGGTGAATTGGGCCTAA-TGGGCC
22050369 ATATA
1 ATATA
22050374 CATGTATGTA
Statistics
Matches: 103, Mismatches: 15, Indels: 4
0.84 0.12 0.03
Matches are distributed among these distances:
27 2 0.02
28 23 0.22
29 78 0.76
ACGTcount: A:0.30, C:0.15, G:0.31, T:0.24
Consensus pattern (29 bp):
ATATAAAGGTGAATTGGGCCTAATGGGCC
Found at i:22051456 original size:17 final size:18
Alignment explanation
Indices: 22051423--22051457 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
22051413 TTTTAAGAAG
22051423 GGTTTTCAATGAAAACAC
1 GGTTTTCAATGAAAACAC
*
22051441 GGTTTTCGAT-AAAACAC
1 GGTTTTCAATGAAAACAC
22051458 TTCAATGTGA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.37, C:0.17, G:0.17, T:0.29
Consensus pattern (18 bp):
GGTTTTCAATGAAAACAC
Found at i:22055909 original size:23 final size:23
Alignment explanation
Indices: 22055866--22055909 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 23
22055856 GGCTAACCTT
*
22055866 ACACACCTGTGTGGAGGTAATGC
1 ACACACCTGTGTGGAAGTAATGC
*
22055889 ACACGACC-GTGTGGAATTAAT
1 ACAC-ACCTGTGTGGAAGTAAT
22055910 TGAATTTATT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
23 15 0.83
24 3 0.17
ACGTcount: A:0.30, C:0.20, G:0.27, T:0.23
Consensus pattern (23 bp):
ACACACCTGTGTGGAAGTAATGC
Found at i:22066124 original size:28 final size:28
Alignment explanation
Indices: 22066058--22066185 Score: 166
Period size: 28 Copynumber: 4.5 Consensus size: 28
22066048 CATGAGATTG
* * **
22066058 GCACTAAGTGTGCGGGTTTAAATTGCATA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
*
22066087 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
* *
22066115 GCACTAAGTGTGCGAGTTTGGTTATGTAA
1 GCACTAAGTGTGCGAGTTTGATTATAT-A
22066144 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
22066172 ACACTAAGTGTGCG
1 GCACTAAGTGTGCG
22066186 GACTTACTAT
Statistics
Matches: 87, Mismatches: 11, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
28 44 0.51
29 43 0.49
ACGTcount: A:0.28, C:0.12, G:0.27, T:0.33
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:22074177 original size:28 final size:28
Alignment explanation
Indices: 22074111--22074238 Score: 175
Period size: 28 Copynumber: 4.5 Consensus size: 28
22074101 CATGAGATTG
* * **
22074111 GCACTAAGTGTGCGGGTTTAAATTGCATA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
*
22074140 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
22074168 GCACTAAGTGTGCGAGTTTGATTATGTAA
1 GCACTAAGTGTGCGAGTTTGATTATAT-A
22074197 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
22074225 ACACTAAGTGTGCG
1 GCACTAAGTGTGCG
22074239 GACTTACTAT
Statistics
Matches: 89, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
28 45 0.51
29 44 0.49
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:22074200 original size:57 final size:57
Alignment explanation
Indices: 22074111--22074238 Score: 186
Period size: 57 Copynumber: 2.2 Consensus size: 57
22074101 CATGAGATTG
*
22074111 GCACTAAGTGTGCGGGTTTAAATTGCATAGCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTAAATTGCATAGCACTAAGTGTGCAAGTTTGATTATATA
* * * *
22074168 GCACTAAGTGTGCGAGTTTGATTATGTA-AGCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTAAAT-TGCATAGCACTAAGTGTGCAAGTTTGATTATATA
*
22074225 ACACTAAGTGTGCG
1 GCACTAAGTGTGCG
22074239 GACTTACTAT
Statistics
Matches: 64, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
57 61 0.95
58 3 0.05
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (57 bp):
GCACTAAGTGTGCGAGTTTAAATTGCATAGCACTAAGTGTGCAAGTTTGATTATATA
Found at i:22091877 original size:27 final size:27
Alignment explanation
Indices: 22091847--22092251 Score: 513
Period size: 27 Copynumber: 15.0 Consensus size: 27
22091837 AATCTCATAT
* *
22091847 CTGTAGGCTAGCATTACTGAAATACCC
1 CTGTAGGGTAGAATTACTGAAATACCC
* *
22091874 CTGTAGGGTATAATTATTGAAATACCC
1 CTGTAGGGTAGAATTACTGAAATACCC
* * *
22091901 CTATAAGGTAGAATTACCGAAATACCC
1 CTGTAGGGTAGAATTACTGAAATACCC
* * *
22091928 CTATAGGGTAGAATTACCGAAATACCT
1 CTGTAGGGTAGAATTACTGAAATACCC
22091955 CTGTAGGGTAGAATTACTGAAATACCC
1 CTGTAGGGTAGAATTACTGAAATACCC
* * *
22091982 CTGTAGGGTAGAGTTATTAAAATACCC
1 CTGTAGGGTAGAATTACTGAAATACCC
* *
22092009 CTATATGGTAGAATTACTGAAATACCC
1 CTGTAGGGTAGAATTACTGAAATACCC
* *
22092036 CTATAGGGTAGAATTACTGAAATATCC
1 CTGTAGGGTAGAATTACTGAAATACCC
* * *
22092063 ATGTAAGGTAGAATTACCGAAATACCC
1 CTGTAGGGTAGAATTACTGAAATACCC
*
22092090 TTGTAGGGTAGAATTACTGAAATACCC
1 CTGTAGGGTAGAATTACTGAAATACCC
* * * *
22092117 CTATAAGGTAGAATTACCGAAATATCC
1 CTGTAGGGTAGAATTACTGAAATACCC
*
22092144 CTGTAGGGTAGAATTAATGAAATACCC
1 CTGTAGGGTAGAATTACTGAAATACCC
* * * **
22092171 CCGTAAGGTAGAATCACCAAAATACCC
1 CTGTAGGGTAGAATTACTGAAATACCC
*
22092198 CTATAGGGTAGAATTACTGAAATACCC
1 CTGTAGGGTAGAATTACTGAAATACCC
*
22092225 CTGTAGGGTAGAATTACTGAGATACCC
1 CTGTAGGGTAGAATTACTGAAATACCC
22092252 TCGTGGGTTA
Statistics
Matches: 322, Mismatches: 56, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 322 1.00
ACGTcount: A:0.36, C:0.19, G:0.19, T:0.26
Consensus pattern (27 bp):
CTGTAGGGTAGAATTACTGAAATACCC
Found at i:22101749 original size:236 final size:236
Alignment explanation
Indices: 22101331--22101805 Score: 905
Period size: 236 Copynumber: 2.0 Consensus size: 236
22101321 CTTCTAAGTA
*
22101331 AGAAGATATTTGAGGCTCTTGTAATCCACGTAAATGATACACTTCTCACCGTTTAGGTAATGCCT
1 AGAAGATATTTGAGGCTCTTGTAATCCACGTAAATGATACACTTCTCACCGTATAGGTAATGCCT
*
22101396 CCAAATTTTCAGTGTGAACACCACTGCGGCCAACTCCAAGTCATGTGTCGAATAGTTCGCCTCAT
66 CCAAATTTTCAGTGTGAACACCACTGCGGCCAACTCCAAGTCATGCGTCGAATAGTTCGCCTCAT
*
22101461 GCGTCTTAAGCTGACGAGAAGTATAAGCCACTACCTTGCCCCCTTGTATCAACACACATCCTAAA
131 GCGTCTTAAGCTGACGAGAAGTATAAGCCACTACCTTGCCCCCTTATATCAACACACATCCTAAA
*
22101526 CCAACATGTGATGCATCACTGTAGACAGTGAATTCTTTCCC
196 CCAACATGTGATGCATCACTGTAGACAGTGAATTCCTTCCC
*
22101567 AGAAGATATTTGAGGCTCTTGTAATCCATGTAAATGATACACTTCTCACCGTATAGGTAATGCCT
1 AGAAGATATTTGAGGCTCTTGTAATCCACGTAAATGATACACTTCTCACCGTATAGGTAATGCCT
22101632 CCAAATTTTCAGTGTGAACACCACTGCGGCCAACTCCAAGTCATGCGTCGAATAGTTCGCCTCAT
66 CCAAATTTTCAGTGTGAACACCACTGCGGCCAACTCCAAGTCATGCGTCGAATAGTTCGCCTCAT
22101697 GCGTCTTAAGCTGACGAGAAGTATAAGCCACTACCTTGCCCCCTTATATCAACACACATCCTAAA
131 GCGTCTTAAGCTGACGAGAAGTATAAGCCACTACCTTGCCCCCTTATATCAACACACATCCTAAA
22101762 CCAACATGTGATGCATCACTGTAGACAGTGAATTCCTTCCC
196 CCAACATGTGATGCATCACTGTAGACAGTGAATTCCTTCCC
22101803 AGA
1 AGA
22101806 CTCTGGCTGC
Statistics
Matches: 234, Mismatches: 5, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
236 234 1.00
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (236 bp):
AGAAGATATTTGAGGCTCTTGTAATCCACGTAAATGATACACTTCTCACCGTATAGGTAATGCCT
CCAAATTTTCAGTGTGAACACCACTGCGGCCAACTCCAAGTCATGCGTCGAATAGTTCGCCTCAT
GCGTCTTAAGCTGACGAGAAGTATAAGCCACTACCTTGCCCCCTTATATCAACACACATCCTAAA
CCAACATGTGATGCATCACTGTAGACAGTGAATTCCTTCCC
Found at i:22113455 original size:40 final size:40
Alignment explanation
Indices: 22113418--22113642 Score: 271
Period size: 40 Copynumber: 5.7 Consensus size: 40
22113408 GCTACTCGTT
*
22113418 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
22113458 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * *
22113498 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGTA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
22113537 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCA
* * * * *
22113577 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
22113618 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
22113643 CATCATTCAA
Statistics
Matches: 165, Mismatches: 15, Indels: 10
0.87 0.08 0.05
Matches are distributed among these distances:
38 2 0.01
39 32 0.19
40 118 0.72
41 13 0.08
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:22113529 original size:79 final size:79
Alignment explanation
Indices: 22113418--22113642 Score: 276
Period size: 79 Copynumber: 2.8 Consensus size: 79
22113408 GCTACTCGTT
* * *
22113418 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGG-CTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
22113483 ATTTAGTAACTCGCA
65 ATTTAGTAACTCGCA
* * *
22113498 CAAATGCCTTCGGGCTTAGCCCGGA-ATTAGTATCTCGTACAAATGCCTTC-GGATCTTAGTCCG
1 CAAATGCCTTCGGGCTTAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGCCCG
*
22113561 GATTTAGTATCTCGCA
64 GATTTAGTAACTCGCA
* * * * *
22113577 CAAATGCCTTCGGATCTTAGTCCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGG-GCTTAGCCCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGCCCG
22113641 GA
64 GA
22113643 CATCATTCAA
Statistics
Matches: 124, Mismatches: 15, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
78 4 0.03
79 65 0.52
80 44 0.35
81 11 0.09
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (79 bp):
CAAATGCCTTCGGGCTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGA
TTTAGTAACTCGCA
Found at i:22113602 original size:119 final size:120
Alignment explanation
Indices: 22113412--22113642 Score: 301
Period size: 119 Copynumber: 1.9 Consensus size: 120
22113402 GATATAGCTA
*
22113412 CTCGTTCAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTA
1 CTCGTACAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTA
* *
22113477 ACCCGGATTTAGTAAC-TCGCACAAATGCCTTCGGG-CTTAGCCCGGAATTAGTAT
66 ACCCGGATATAGTAACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGAATTAGTAT
* * *
22113531 CTCGTACAAATGCCTTC-GGATCTTAGTCCGGATT-TAGTATCTCGCACAAATGCCTTC-GGATC
1 CTCGTACAAATGCCTTCGGGA-CATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-C
** * *
22113593 TTAGTCCGGATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
63 TTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
22113643 CATCATTCAA
Statistics
Matches: 97, Mismatches: 10, Indels: 9
0.84 0.09 0.08
Matches are distributed among these distances:
118 6 0.06
119 70 0.72
120 21 0.22
ACGTcount: A:0.24, C:0.27, G:0.22, T:0.27
Consensus pattern (120 bp):
CTCGTACAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTA
ACCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACTTAGCCCGGAATTAGTAT
Found at i:22128622 original size:27 final size:26
Alignment explanation
Indices: 22128583--22128642 Score: 66
Period size: 27 Copynumber: 2.3 Consensus size: 26
22128573 CCACATATAT
* *
22128583 ATATCGGTTCTGGTGGCCTAGCCACA
1 ATATCTGTTCTGGTGACCTAGCCACA
* * *
22128609 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGT-TCTGGTGACCTAGCCACA
22128636 ATATCTG
1 ATATCTG
22128643 GCAGCTTCGC
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 7 0.25
27 21 0.75
ACGTcount: A:0.22, C:0.23, G:0.22, T:0.33
Consensus pattern (26 bp):
ATATCTGTTCTGGTGACCTAGCCACA
Found at i:22135922 original size:40 final size:40
Alignment explanation
Indices: 22135840--22135982 Score: 198
Period size: 40 Copynumber: 3.6 Consensus size: 40
22135830 TATTCGGATG
* * * *
22135840 ATATCCGGGCTAAGACTCGAAGGCACTTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCA-TTTGTGCGAGTTACT
22135881 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
22135921 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGATTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
22135961 ATATCC-GGTTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
22135983 TACTTGGGTT
Statistics
Matches: 94, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
39 14 0.15
40 57 0.61
41 23 0.24
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:22138415 original size:276 final size:277
Alignment explanation
Indices: 22137921--22138462 Score: 840
Period size: 276 Copynumber: 2.0 Consensus size: 277
22137911 AAGAAATTGA
**
22137921 CAAATATCTTCATCCTCTTCAATCATCTTCTCTAAAACAAAAAAAGCCCTAGTTGCCTTTTCCCA
1 CAAATATCTTCATCCTCTTCAATCATCTTCTCTAAAACAAAAAAAGCCCTAGTCACCTTTTCCCA
* **
22137986 CTGTTGATGCCATTGCTCACCGGCATCTTCTTCGACCAAGAAGCATTCAATGACGTCCATGTTTC
66 CTATTGATGCCATTGCTCACCGGCATCTTCTTCGACCAAGAAGCATTCAATGACGTCCATCATTC
22138051 CATCTCCGAAATTTGATCTTTTCCTTTTGAGTTACAAAAAAAGAAAAGTGAAAGAAAAACCCAAA
131 CATCTCCGAAATTTGATCTTTTCCTTTTGAGTTACAAAAAAAGAAAAGTGAAAGAAAAACCCAAA
* * *
22138116 AATATTAAAGAATTTTTTGGGTTTCTATCCTCTTCTTCTACCCTAGCTCTTTGATTTCCCCTTGC
196 AATATCAAAGAATTTTTTGGGTTTCTATCCCCTTCTTCTACCCTAGCTCTTTGATTTCCCCTTCC
22138181 AAAGGCAATGAAATAGG
261 AAAGGCAATGAAATAGG
* * * *
22138198 CAAATATCTTTATCCTCTTCAATCTTCTTCTCTAAAGC-AAAAAAGCCTTAGTCACCTTTTCCCA
1 CAAATATCTTCATCCTCTTCAATCATCTTCTCTAAAACAAAAAAAGCCCTAGTCACCTTTTCCCA
* * *
22138262 TTATTGATGCTATTGCTCACCGGCATCTTC-TCTGACCAAGAAGCGTTCAATGACGTCCATCATT
66 CTATTGATGCCATTGCTCACCGGCATCTTCTTC-GACCAAGAAGCATTCAATGACGTCCATCATT
* * **
22138326 CCATCTCTGAAATTTGATCTTTTCCTTTTGAGTTTCAAGGAAAAA-ATGAGTGAAAGAAAAACCC
130 CCATCTCCGAAATTTGATCTTTTCCTTTTGAGTTACAA--AAAAAGAAAAGTGAAAGAAAAACCC
* *
22138390 AGAAA-ATCAAAGAATTTTTTGGGTTTCTATCCCCTTCTTGTACCCTAGCTCTTTGATTTCCCCT
193 AAAAATATCAAAGAATTTTTTGGGTTTCTATCCCCTTCTTCTACCCTAGCTCTTTGATTTCCCCT
22138454 TCCAAAGGC
258 TCCAAAGGC
22138463 CATTCTCACT
Statistics
Matches: 241, Mismatches: 21, Indels: 7
0.90 0.08 0.03
Matches are distributed among these distances:
275 2 0.01
276 178 0.74
277 56 0.23
278 5 0.02
ACGTcount: A:0.29, C:0.25, G:0.13, T:0.33
Consensus pattern (277 bp):
CAAATATCTTCATCCTCTTCAATCATCTTCTCTAAAACAAAAAAAGCCCTAGTCACCTTTTCCCA
CTATTGATGCCATTGCTCACCGGCATCTTCTTCGACCAAGAAGCATTCAATGACGTCCATCATTC
CATCTCCGAAATTTGATCTTTTCCTTTTGAGTTACAAAAAAAGAAAAGTGAAAGAAAAACCCAAA
AATATCAAAGAATTTTTTGGGTTTCTATCCCCTTCTTCTACCCTAGCTCTTTGATTTCCCCTTCC
AAAGGCAATGAAATAGG
Found at i:22142732 original size:18 final size:18
Alignment explanation
Indices: 22142709--22142751 Score: 77
Period size: 18 Copynumber: 2.4 Consensus size: 18
22142699 TGTTTTACAT
22142709 TGAATTATGTATGAATTA
1 TGAATTATGTATGAATTA
22142727 TGAATTATGTATGAATTA
1 TGAATTATGTATGAATTA
*
22142745 AGAATTA
1 TGAATTA
22142752 CCATATGTAT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.42, C:0.00, G:0.16, T:0.42
Consensus pattern (18 bp):
TGAATTATGTATGAATTA
Found at i:22143857 original size:18 final size:19
Alignment explanation
Indices: 22143830--22143871 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 19
22143820 GCAGTTATAA
*
22143830 CCAAAGT-AAATTAAAATC
1 CCAAAGTAAAAATAAAATC
*
22143848 CCAAATTAAAAATAAAAT-
1 CCAAAGTAAAAATAAAATC
22143866 CCAAAG
1 CCAAAG
22143872 AGGCCTTATT
Statistics
Matches: 20, Mismatches: 3, Indels: 2
0.80 0.12 0.08
Matches are distributed among these distances:
18 11 0.55
19 9 0.45
ACGTcount: A:0.60, C:0.17, G:0.05, T:0.19
Consensus pattern (19 bp):
CCAAAGTAAAAATAAAATC
Found at i:22153617 original size:46 final size:45
Alignment explanation
Indices: 22153550--22153724 Score: 208
Period size: 46 Copynumber: 3.8 Consensus size: 45
22153540 TGTAACCCGC
*
22153550 CCATAAGTGAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGC-TTCGCAT
* * *
22153596 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAG-TT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--GCTTCGCAT
* *** *
22153642 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGGCATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGGC-TTCGCAT
*
22153689 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
22153725 ATGCCCAAAT
Statistics
Matches: 108, Mismatches: 16, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
45 2 0.02
46 70 0.65
47 34 0.31
48 2 0.02
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.22
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCTTCGCAT
Found at i:22153679 original size:93 final size:93
Alignment explanation
Indices: 22153558--22153729 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
22153548 GCCCATAAGT
* *
22153558 GAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
22153623 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
*
22153651 GAACTCGGACTCAACTCAACGAGTTCGGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
22153716 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
22153730 CAAATATCCT
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:22153744 original size:46 final size:44
Alignment explanation
Indices: 22153555--22153744 Score: 118
Period size: 46 Copynumber: 4.1 Consensus size: 44
22153545 CCCGCCCATA
* * ** ** **
22153555 AGTGAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATCC-T
* *
22153600 AAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCA---A-ATC-CT
* * *
22153650 --CGAACTCGGACTCAACTCAACGAGTTCGGGCATTCGC--ATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTC-GG-ATGCCCAAATCC-T
22153693 AAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATATCCT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCC-AA-ATCCT
22153740 AGTGA
1 AGTGA
22153745 CATGTCACTT
Statistics
Matches: 113, Mismatches: 16, Indels: 30
0.71 0.10 0.19
Matches are distributed among these distances:
42 1 0.01
43 4 0.04
44 4 0.04
45 2 0.02
46 62 0.55
47 26 0.23
48 6 0.05
49 3 0.03
50 4 0.04
51 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (44 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATCCT
Found at i:22155943 original size:30 final size:30
Alignment explanation
Indices: 22155899--22155987 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
22155889 CAAAGATAAC
22155899 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
22155928 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
22155958 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
22155988 TGATACTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:22155947 original size:15 final size:15
Alignment explanation
Indices: 22155899--22155978 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
22155889 CAAAGATAAC
*
22155899 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
22155913 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
22155928 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
22155943 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
22155958 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
22155973 AAGAAA
1 AAGAAA
22155979 CCCAAGATAT
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:22155987 original size:15 final size:15
Alignment explanation
Indices: 22155910--22155987 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
22155900 AGAAAACCGA
22155910 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
22155925 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
22155939 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
22155954 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
22155970 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
22155985 ATA
1 ATA
22155988 TGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:22159096 original size:46 final size:46
Alignment explanation
Indices: 22158921--22159096 Score: 196
Period size: 46 Copynumber: 3.8 Consensus size: 46
22158911 TGTAACCCGC
* * * *
22158921 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGAAT
* * *
22158967 CCATAAGTGAACTCGGACTCAACTCTACGAGCTT-GG--ATTCCTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAG-TTCGGACATT-CGA-AT
* ***
22159013 TCATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGAAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGTTCGGACATTCGAAT
22159060 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
22159097 TGCCCAAATA
Statistics
Matches: 106, Mismatches: 17, Indels: 14
0.77 0.12 0.10
Matches are distributed among these distances:
44 2 0.02
45 1 0.01
46 68 0.64
47 30 0.28
48 2 0.02
49 3 0.03
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.23
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGAAT
Found at i:22162901 original size:12 final size:12
Alignment explanation
Indices: 22162884--22162909 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
22162874 TGGTTTATTA
22162884 TTGATATATAAT
1 TTGATATATAAT
22162896 TTGATATATAAT
1 TTGATATATAAT
22162908 TT
1 TT
22162910 TTTGTTTAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.38, C:0.00, G:0.08, T:0.54
Consensus pattern (12 bp):
TTGATATATAAT
Found at i:22183860 original size:19 final size:18
Alignment explanation
Indices: 22183821--22183859 Score: 69
Period size: 18 Copynumber: 2.2 Consensus size: 18
22183811 GTTGCTTGGC
22183821 TTTGGATAAAAACGTCAT
1 TTTGGATAAAAACGTCAT
*
22183839 TTTGGATCAAAACGTCAT
1 TTTGGATAAAAACGTCAT
22183857 TTT
1 TTT
22183860 TTTCCATATA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.33, C:0.13, G:0.15, T:0.38
Consensus pattern (18 bp):
TTTGGATAAAAACGTCAT
Found at i:22202923 original size:349 final size:349
Alignment explanation
Indices: 22202284--22202982 Score: 1398
Period size: 349 Copynumber: 2.0 Consensus size: 349
22202274 ACCTATTTAA
22202284 GCATGTAGTGAAAATATTGGCTTTGCATGTCAAATACTCCTTTTGTGTGCATAGTGGCCGGCCAT
1 GCATGTAGTGAAAATATTGGCTTTGCATGTCAAATACTCCTTTTGTGTGCATAGTGGCCGGCCAT
22202349 GATGGAGCATATATTAGACTATGTGGTAAATTTCCATGAAGTGGTCATTATTTTAAGTAAAAGAA
66 GATGGAGCATATATTAGACTATGTGGTAAATTTCCATGAAGTGGTCATTATTTTAAGTAAAAGAA
22202414 AAGAAATAATAAAAGAAATACTAAGGATACTAAAAGAAAAAAAAAAGAAAGAGGGAGGTTATCAC
131 AAGAAATAATAAAAGAAATACTAAGGATACTAAAAGAAAAAAAAAAGAAAGAGGGAGGTTATCAC
22202479 CTTGTTCTTCTTGGCCGATTGTAGAGAGGAAGATAGGAGGGTAGCATTCGGTCACTTGAAGCTTG
196 CTTGTTCTTCTTGGCCGATTGTAGAGAGGAAGATAGGAGGGTAGCATTCGGTCACTTGAAGCTTG
22202544 AGAAGGTTAGTAAAATTTTGTTAGTTTTGAAATTTTAAGCTTAGTTTAAGTCATTTAGCTAGCTC
261 AGAAGGTTAGTAAAATTTTGTTAGTTTTGAAATTTTAAGCTTAGTTTAAGTCATTTAGCTAGCTC
22202609 CATATTAGCCCATTTGAAAACTTG
326 CATATTAGCCCATTTGAAAACTTG
22202633 GCATGTAGTGAAAATATTGGCTTTGCATGTCAAATACTCCTTTTGTGTGCATAGTGGCCGGCCAT
1 GCATGTAGTGAAAATATTGGCTTTGCATGTCAAATACTCCTTTTGTGTGCATAGTGGCCGGCCAT
22202698 GATGGAGCATATATTAGACTATGTGGTAAATTTCCATGAAGTGGTCATTATTTTAAGTAAAAGAA
66 GATGGAGCATATATTAGACTATGTGGTAAATTTCCATGAAGTGGTCATTATTTTAAGTAAAAGAA
22202763 AAGAAATAATAAAAGAAATACTAAGGATACTAAAAGAAAAAAAAAAGAAAGAGGGAGGTTATCAC
131 AAGAAATAATAAAAGAAATACTAAGGATACTAAAAGAAAAAAAAAAGAAAGAGGGAGGTTATCAC
22202828 CTTGTTCTTCTTGGCCGATTGTAGAGAGGAAGATAGGAGGGTAGCATTCGGTCACTTGAAGCTTG
196 CTTGTTCTTCTTGGCCGATTGTAGAGAGGAAGATAGGAGGGTAGCATTCGGTCACTTGAAGCTTG
22202893 AGAAGGTTAGTAAAATTTTGTTAGTTTTGAAATTTTAAGCTTAGTTTAAGTCATTTAGCTAGCTC
261 AGAAGGTTAGTAAAATTTTGTTAGTTTTGAAATTTTAAGCTTAGTTTAAGTCATTTAGCTAGCTC
22202958 CATATTAGCCCATTTGAAAACTTG
326 CATATTAGCCCATTTGAAAACTTG
22202982 G
1 G
22202983 AATTTTTGAT
Statistics
Matches: 350, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
349 350 1.00
ACGTcount: A:0.35, C:0.12, G:0.22, T:0.31
Consensus pattern (349 bp):
GCATGTAGTGAAAATATTGGCTTTGCATGTCAAATACTCCTTTTGTGTGCATAGTGGCCGGCCAT
GATGGAGCATATATTAGACTATGTGGTAAATTTCCATGAAGTGGTCATTATTTTAAGTAAAAGAA
AAGAAATAATAAAAGAAATACTAAGGATACTAAAAGAAAAAAAAAAGAAAGAGGGAGGTTATCAC
CTTGTTCTTCTTGGCCGATTGTAGAGAGGAAGATAGGAGGGTAGCATTCGGTCACTTGAAGCTTG
AGAAGGTTAGTAAAATTTTGTTAGTTTTGAAATTTTAAGCTTAGTTTAAGTCATTTAGCTAGCTC
CATATTAGCCCATTTGAAAACTTG
Found at i:22204295 original size:40 final size:40
Alignment explanation
Indices: 22204240--22204516 Score: 446
Period size: 40 Copynumber: 6.9 Consensus size: 40
22204230 GCATGAGCAT
*
22204240 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGTGAG
1 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
*
22204280 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAG
1 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
*
22204320 TTGATAAATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
1 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
*
22204360 TTGATATATCCGGGCTAAAACCCGAAGGCATTTGTGCGAG
1 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
* * *
22204400 TTGATATATCCGGGCTAAGACCCGAAGGCAATTATGCAAG
1 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
*
22204440 TTGATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAG
1 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
* * * *
22204480 TTGCTATACCCGGGTTAAGACCCGAAGGCAATTGTGC
1 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGC
22204517 TTGCGATTAT
Statistics
Matches: 218, Mismatches: 19, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 218 1.00
ACGTcount: A:0.27, C:0.21, G:0.28, T:0.24
Consensus pattern (40 bp):
TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
Found at i:22212416 original size:48 final size:48
Alignment explanation
Indices: 22212364--22212487 Score: 151
Period size: 48 Copynumber: 2.6 Consensus size: 48
22212354 TCGAGGTATG
* ** * * **
22212364 TGCCATGTCCCAGACATGGTCTTACACTAGCTCTTATCTTAA-TGCAGA
1 TGCCATGTCCCAGACATGGTCTTACACTAGCACACATATCAACACCA-A
*
22212412 TGCCATGTCCCAGACATGGTCTTACACCAGCACACATATCAACACCAA
1 TGCCATGTCCCAGACATGGTCTTACACTAGCACACATATCAACACCAA
*
22212460 TGCCATGTCCCAGACATGGTCCTACACT
1 TGCCATGTCCCAGACATGGTCTTACACT
22212488 GACTCTCATA
Statistics
Matches: 65, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
48 63 0.97
49 2 0.03
ACGTcount: A:0.27, C:0.32, G:0.15, T:0.25
Consensus pattern (48 bp):
TGCCATGTCCCAGACATGGTCTTACACTAGCACACATATCAACACCAA
Found at i:22212486 original size:96 final size:96
Alignment explanation
Indices: 22212364--22212548 Score: 248
Period size: 96 Copynumber: 1.9 Consensus size: 96
22212354 TCGAGGTATG
* * ** * *
22212364 TGCCATGTCCCAGACATGGTCTTACACT-AGCTCTTATCTTAAT-GCAGATGCCATGTCCCAGAC
1 TGCCATGTCCCAGACATGGTCCTACACTGA-CTCTCATAAT-ATGGCAGATACCATGTCCCAAAC
*
22212427 ATGGTCTTACACCAGCACACATATCAACACCAA
64 ATAGTCTTACACCAGCACACATATCAACACCAA
* *
22212460 TGCCATGTCCCAGACATGGTCCTACACTGACTCTCATAATGTGGCTGATACCATGTCCCAAACAT
1 TGCCATGTCCCAGACATGGTCCTACACTGACTCTCATAATATGGCAGATACCATGTCCCAAACAT
*
22212525 AGTCTTACACTAGCACACATATCA
66 AGTCTTACACCAGCACACATATCA
22212549 CCCAAATGTC
Statistics
Matches: 77, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
95 1 0.01
96 75 0.97
97 1 0.01
ACGTcount: A:0.29, C:0.31, G:0.15, T:0.25
Consensus pattern (96 bp):
TGCCATGTCCCAGACATGGTCCTACACTGACTCTCATAATATGGCAGATACCATGTCCCAAACAT
AGTCTTACACCAGCACACATATCAACACCAA
Found at i:22217881 original size:43 final size:43
Alignment explanation
Indices: 22217834--22217946 Score: 122
Period size: 42 Copynumber: 2.7 Consensus size: 43
22217824 TCTCGATTGA
* * **
22217834 GATTTACGTATAAGACCATGTCTGGGACATTGGCATCG-TATTT
1 GATTTACGTGTAAGACCATGTCTAGGACAGAGGCATCGATA-TT
*
22217877 GATTT-CGTGTAAGACCCTGTCTAGGACAGAGGCATCGATATT
1 GATTTACGTGTAAGACCATGTCTAGGACAGAGGCATCGATATT
* * * *
22217919 GAATTACATGTAAGACCACGTCAAGGAC
1 GATTTACGTGTAAGACCATGTCTAGGAC
22217947 GTCGGCATTG
Statistics
Matches: 58, Mismatches: 10, Indels: 4
0.81 0.14 0.06
Matches are distributed among these distances:
42 33 0.57
43 25 0.43
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.28
Consensus pattern (43 bp):
GATTTACGTGTAAGACCATGTCTAGGACAGAGGCATCGATATT
Found at i:22221742 original size:103 final size:104
Alignment explanation
Indices: 22221563--22221827 Score: 424
Period size: 103 Copynumber: 2.6 Consensus size: 104
22221553 AACCGTTATT
* * * *
22221563 GGTGGATCTCGCACTTAGCACCACCACTTAATCGGGGAATCAGCACTTAGCAACCCCTTGGGGGA
1 GGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGGA
** *
22221628 ATCAGCACATAGCAACCCCCTTT-TTATTTCAGAGATAC
66 ATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATAC
*
22221666 GGTGGATATCGCACTTAGCACCACCAATGAACCGGGGAATCAGCACTTAGCAACCCCTCGGGGGA
1 GGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGGA
22221731 ATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATAC
66 ATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATAC
* **
22221770 GGTGGATATCGCACATAGCACCACCAATGAATCGGGGAATCAGCACACAGCAACCCCT
1 GGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCT
22221828 TTATGTACAA
Statistics
Matches: 149, Mismatches: 12, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
103 83 0.56
104 66 0.44
ACGTcount: A:0.30, C:0.30, G:0.21, T:0.19
Consensus pattern (104 bp):
GGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGGA
ATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATAC
Found at i:22229925 original size:12 final size:12
Alignment explanation
Indices: 22229908--22229934 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
22229898 ATTCCGAAGT
22229908 ATATATATATAC
1 ATATATATATAC
22229920 ATATATATATAC
1 ATATATATATAC
22229932 ATA
1 ATA
22229935 AGTATGCCAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.52, C:0.07, G:0.00, T:0.41
Consensus pattern (12 bp):
ATATATATATAC
Found at i:22230444 original size:27 final size:27
Alignment explanation
Indices: 22230413--22230590 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
22230403 TAAATTGTAC
22230413 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
22230440 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
22230466 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
22230494 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
22230522 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
22230549 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
22230576 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
22230591 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:22230527 original size:82 final size:81
Alignment explanation
Indices: 22230414--22230569 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
22230404 AAATTGTACA
* *
22230414 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
22230478 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
22230495 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
22230560 TGCGAGTTGA
65 TGCGAATTGA
22230570 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:22230581 original size:82 final size:81
Alignment explanation
Indices: 22230410--22230590 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
22230400 GATTAAATTG
* *
22230410 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
22230475 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
22230491 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
22230555 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
22230573 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
22230591 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:22238177 original size:12 final size:12
Alignment explanation
Indices: 22238160--22238186 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
22238150 ATTCCGAAGT
22238160 ATATATATATAC
1 ATATATATATAC
22238172 ATATATATATAC
1 ATATATATATAC
22238184 ATA
1 ATA
22238187 AGTATGCCAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.52, C:0.07, G:0.00, T:0.41
Consensus pattern (12 bp):
ATATATATATAC
Found at i:22238696 original size:27 final size:27
Alignment explanation
Indices: 22238665--22238842 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
22238655 TAAATTGTAC
22238665 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
22238692 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
22238718 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
22238746 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
22238774 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
22238801 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
22238828 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
22238843 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:22238779 original size:82 final size:81
Alignment explanation
Indices: 22238666--22238821 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
22238656 AAATTGTACA
* *
22238666 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
22238730 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
22238747 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
22238812 TGCGAGTTGA
65 TGCGAATTGA
22238822 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:22238833 original size:82 final size:81
Alignment explanation
Indices: 22238662--22238842 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
22238652 GATTAAATTG
* *
22238662 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
22238727 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
22238743 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
22238807 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
22238825 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
22238843 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:22246038 original size:221 final size:221
Alignment explanation
Indices: 22245650--22246067 Score: 773
Period size: 221 Copynumber: 1.9 Consensus size: 221
22245640 TAAGTGCCTT
22245650 TATATATATATTCGAATGGATGTATTAACTTCTATTAATGTATGAAATAAGTAAATTCATGTTAA
1 TATATATATATTCGAATGGATGTATTAACTTCTATTAATGTATGAAATAAGTAAATTCATGTTAA
*
22245715 CTAATGTAATCATGCCGCAGAAATGAAATTTTGAAACTTGTTTTGTTTGACATGTAATTTGCACA
66 CTAATGTAATCATGCCGCAGAAATGAAATTTTGAAACTTGTTTTATTTGACATGTAATTTGCACA
* *
22245780 TACGCAAGTCTTTTAAAATAAAAATATAATGGGTCTGATATTAAATTAATAAAGTTGTTGGTTTG
131 TACACAAGTCTTTTAAAATAAAAATATAATAGGTCTGATATTAAATTAATAAAGTTGTTGGTTTG
22245845 TTATATGTTCTGTATATATATATTTA
196 TTATATGTTCTGTATATATATATTTA
*
22245871 TATATATATATTCGAATGGATGTATTAACTTGTATTAATGTATGAAATAAGTAAATTCATGTTAA
1 TATATATATATTCGAATGGATGTATTAACTTCTATTAATGTATGAAATAAGTAAATTCATGTTAA
*
22245936 CTAATGTAATCATGCCGCAGAAATGAAATTTTGAAACTTGTTTTATTTGACTTGTAATTTGCACA
66 CTAATGTAATCATGCCGCAGAAATGAAATTTTGAAACTTGTTTTATTTGACATGTAATTTGCACA
* *
22246001 TACATAAGTCTTTTAGAATAAAAATATAATAGGTCTGATATTAAATTAATAAAGTTGTTGGTTTG
131 TACACAAGTCTTTTAAAATAAAAATATAATAGGTCTGATATTAAATTAATAAAGTTGTTGGTTTG
22246066 TT
196 TT
22246068 TTAACATATG
Statistics
Matches: 190, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
221 190 1.00
ACGTcount: A:0.37, C:0.08, G:0.15, T:0.41
Consensus pattern (221 bp):
TATATATATATTCGAATGGATGTATTAACTTCTATTAATGTATGAAATAAGTAAATTCATGTTAA
CTAATGTAATCATGCCGCAGAAATGAAATTTTGAAACTTGTTTTATTTGACATGTAATTTGCACA
TACACAAGTCTTTTAAAATAAAAATATAATAGGTCTGATATTAAATTAATAAAGTTGTTGGTTTG
TTATATGTTCTGTATATATATATTTA
Found at i:22248364 original size:23 final size:23
Alignment explanation
Indices: 22248334--22248401 Score: 118
Period size: 23 Copynumber: 3.0 Consensus size: 23
22248324 TGGCAATTAT
22248334 CAGTCAATAAGGTGATTATAAAC
1 CAGTCAATAAGGTGATTATAAAC
*
22248357 CAGTCAATAAGGTGATTATAGAC
1 CAGTCAATAAGGTGATTATAAAC
*
22248380 CAGCCAATAAGGTGATTATAAA
1 CAGTCAATAAGGTGATTATAAA
22248402 GAGTAAGTAT
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 42 1.00
ACGTcount: A:0.43, C:0.13, G:0.19, T:0.25
Consensus pattern (23 bp):
CAGTCAATAAGGTGATTATAAAC
Found at i:22256117 original size:47 final size:47
Alignment explanation
Indices: 22256059--22256453 Score: 583
Period size: 47 Copynumber: 8.4 Consensus size: 47
22256049 CAGCCAAGAC
22256059 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
*
22256106 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
* *
22256153 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTAAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
*
22256200 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
* * *
22256247 AGTGTATTTGTGTGATAAGGCCTAATAGTCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
* * * *
22256294 AGTGTATATGTGTAATAAGGCCAAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
*
22256341 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
* * * * * * ** *
22256388 AGTGTATATATGTGACAGGGCCGAGTGGCCAACATGATGGATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
* *
22256435 AGTGCATAAATGTGATAAG
1 AGTGTATATATGTGATAAG
22256454 TCCCGAAGGG
Statistics
Matches: 321, Mismatches: 27, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 321 1.00
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
Found at i:22259780 original size:11 final size:11
Alignment explanation
Indices: 22259764--22259788 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
22259754 TTATATATAC
22259764 TAATAAAATAA
1 TAATAAAATAA
22259775 TAATAAAATAA
1 TAATAAAATAA
22259786 TAA
1 TAA
22259789 AATATCATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (11 bp):
TAATAAAATAA
Found at i:22261203 original size:47 final size:47
Alignment explanation
Indices: 22261149--22261267 Score: 195
Period size: 47 Copynumber: 2.5 Consensus size: 47
22261139 GCCCATAAGT
22261149 GAACTCGGACTCAACTCAACGAGTTTGGATGCCT-AGTTACATCTAAC
1 GAACTCGGACTCAACTCAACGAGTTTGGATGCCTGA-TTACATCTAAC
* * *
22261196 GAACTCGGACTCAACTTAACGAGTTTGGATGCCTGATTATATCTCAC
1 GAACTCGGACTCAACTCAACGAGTTTGGATGCCTGATTACATCTAAC
22261243 GAACTCGGACTCAACTCAACGAGTT
1 GAACTCGGACTCAACTCAACGAGTT
22261268 CGGAACTCAA
Statistics
Matches: 67, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
47 66 0.99
48 1 0.01
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.26
Consensus pattern (47 bp):
GAACTCGGACTCAACTCAACGAGTTTGGATGCCTGATTACATCTAAC
Found at i:22269261 original size:42 final size:43
Alignment explanation
Indices: 22269146--22269297 Score: 143
Period size: 42 Copynumber: 3.6 Consensus size: 43
22269136 CATAGGATTA
* * *
22269146 CGATATGTGATTTCGTCTAAGACCAC-GT-TGGGACGTTGGCAT
1 CGATATATGATTTCGTGTAAGACC-CTGTCTGGGACATTGGCAT
* * * *
22269188 CGATTTGA-GATTTACGTGTATGAACATGTCTGGGACATTGGCAT
1 CGATAT-ATGATTT-CGTGTAAGACCCTGTCTGGGACATTGGCAT
*
22269232 C-ATATATGATTTCGTGTAAGACCCTGTCTGGGACAGTGGCAT
1 CGATATATGATTTCGTGTAAGACCCTGTCTGGGACATTGGCAT
* *
22269274 CGATAGT-TGATTACTTGTAAGACC
1 CGATA-TATGATTTCGTGTAAGACC
22269298 TCATCTGGGA
Statistics
Matches: 89, Mismatches: 14, Indels: 13
0.77 0.12 0.11
Matches are distributed among these distances:
42 38 0.43
43 36 0.40
44 15 0.17
ACGTcount: A:0.24, C:0.17, G:0.26, T:0.32
Consensus pattern (43 bp):
CGATATATGATTTCGTGTAAGACCCTGTCTGGGACATTGGCAT
Found at i:22269305 original size:43 final size:42
Alignment explanation
Indices: 22269216--22269307 Score: 107
Period size: 43 Copynumber: 2.2 Consensus size: 42
22269206 TATGAACATG
* * *
22269216 TCTGGGACATTGGCATCATATATGATTTCGTGTAAGACCCTG
1 TCTGGGACAGTGGCATCATATATGATTACGTGTAAGACCCTA
*
22269258 TCTGGGACAGTGGCATCGATAGT-TGATTACTTGTAAGA-CCTCA
1 TCTGGGACAGTGGCATC-ATA-TATGATTACGTGTAAGACCCT-A
22269301 TCTGGGA
1 TCTGGGA
22269308 TGTAGGCATT
Statistics
Matches: 43, Mismatches: 4, Indels: 5
0.83 0.08 0.10
Matches are distributed among these distances:
42 19 0.44
43 23 0.53
44 1 0.02
ACGTcount: A:0.24, C:0.18, G:0.26, T:0.32
Consensus pattern (42 bp):
TCTGGGACAGTGGCATCATATATGATTACGTGTAAGACCCTA
Found at i:22270704 original size:17 final size:18
Alignment explanation
Indices: 22270682--22270716 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
22270672 TTACATTGGA
22270682 GTGTTTT-AGTGAAAACC
1 GTGTTTTCAGTGAAAACC
*
22270699 GTGTTTTCATTGAAAACC
1 GTGTTTTCAGTGAAAACC
22270717 CTTCTTAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.29, C:0.14, G:0.20, T:0.37
Consensus pattern (18 bp):
GTGTTTTCAGTGAAAACC
Found at i:22271212 original size:28 final size:27
Alignment explanation
Indices: 22271181--22271327 Score: 143
Period size: 28 Copynumber: 5.1 Consensus size: 27
22271171 ACATACATGC
* *
22271181 ATATGGCCAACTTGGCCCAATCTCATTT
1 ATATGGCCCA-TTGGCCCAATCACATTT
*
22271209 ATATGGCCCATCAGGCCCAATTCACATTT
1 ATATGGCCCAT-TGGCCCAA-TCACATTT
* *
22271238 CATATGGCCCATCAGGCCCAAATCACCTTT
1 -ATATGGCCCAT-TGGCCC-AATCACATTT
*
22271268 ATATGGCCCATTAGGCCCAATCTCATTT
1 ATATGGCCCATT-GGCCCAATCACATTT
*
22271296 ATATGGTCCATCTGGCCCAAATCACA-TT
1 ATATGGCCCAT-TGGCCC-AATCACATTT
22271324 ATAT
1 ATAT
22271328 TCATGCTCAC
Statistics
Matches: 103, Mismatches: 9, Indels: 14
0.82 0.07 0.11
Matches are distributed among these distances:
27 1 0.01
28 45 0.44
29 30 0.29
30 25 0.24
31 2 0.02
ACGTcount: A:0.27, C:0.30, G:0.14, T:0.29
Consensus pattern (27 bp):
ATATGGCCCATTGGCCCAATCACATTT
Found at i:22272805 original size:16 final size:16
Alignment explanation
Indices: 22272780--22272812 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
22272770 AAAAAATTAA
22272780 GATTTCGGGATTTTTG
1 GATTTCGGGATTTTTG
*
22272796 GATTTTGGGATTTTTG
1 GATTTCGGGATTTTTG
22272812 G
1 G
22272813 GGCATTACAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.12, C:0.03, G:0.33, T:0.52
Consensus pattern (16 bp):
GATTTCGGGATTTTTG
Found at i:22276819 original size:85 final size:85
Alignment explanation
Indices: 22276676--22276854 Score: 340
Period size: 85 Copynumber: 2.1 Consensus size: 85
22276666 GGCCGGCCAT
22276676 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGCGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGCGTAGTGCATTAT
22276741 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
*
22276761 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGCGTAGTGCATTAT
22276826 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
*
22276846 GGGCATGGG
1 GAGCATGGG
22276855 CAATAAAATA
Statistics
Matches: 92, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
85 92 1.00
ACGTcount: A:0.37, C:0.09, G:0.27, T:0.26
Consensus pattern (85 bp):
GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGCGTAGTGCATTAT
GTAAGGATTAATAAAATAAA
Found at i:22279087 original size:47 final size:47
Alignment explanation
Indices: 22279036--22279422 Score: 531
Period size: 47 Copynumber: 8.1 Consensus size: 47
22279026 TTAGAATTTT
* *
22279036 ATGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
**
22279083 ATGTGATGAATGTGAACCCGTATATATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAA--C--ATGCATATGTGTGATAAGGCCGAATGGCCA
* * *
22279134 CTGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
* ** *
22279181 ATGTGATGAATGTGTACCCGTATATATTTGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTG-A-AC--ATGCATATGTGTGATAAGGCCGAATGGCCA
*
22279232 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
*
22279279 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
* *
22279326 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
* * * *
22279373 ATGTGATGAATGTGAACATGAATATATGTGGTAAGGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
22279420 ATG
1 ATG
22279423 CGAAACGTGT
Statistics
Matches: 304, Mismatches: 28, Indels: 16
0.87 0.08 0.05
Matches are distributed among these distances:
47 217 0.71
48 1 0.00
49 4 0.01
50 1 0.00
51 81 0.27
ACGTcount: A:0.30, C:0.13, G:0.30, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
Found at i:22279147 original size:98 final size:97
Alignment explanation
Indices: 22279036--22279422 Score: 588
Period size: 98 Copynumber: 4.0 Consensus size: 97
22279026 TTAGAATTTT
*
22279036 ATGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
22279101 CGTATATATATGTGTGATAAGGCCGAATGGCCA
66 CG-ATATATATGTGTGATAAGGCCGAATGGCCA
* * *
22279134 CTGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGTACC
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
*
22279199 CGTATATATTTGTGTGATAAGGCCGAATGGCCA
66 CG-ATATATATGTGTGATAAGGCCGAATGGCCA
22279232 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA--
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
***
22279295 C-ATGCGTATGTGTGATAAGGCCGAATGGCCA
66 CGATATATATGTGTGATAAGGCCGAATGGCCA
* * * *
22279326 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
* *
22279391 TGA-ATATATGTG-G-TAAGGCCGAATGGCTA
66 CGATATATATGTGTGATAAGGCCGAATGGCCA
22279420 ATG
1 ATG
22279423 CGAAACGTGT
Statistics
Matches: 268, Mismatches: 18, Indels: 10
0.91 0.06 0.03
Matches are distributed among these distances:
94 104 0.39
95 1 0.00
96 7 0.03
97 1 0.00
98 155 0.58
ACGTcount: A:0.30, C:0.13, G:0.30, T:0.27
Consensus pattern (97 bp):
ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
CGATATATATGTGTGATAAGGCCGAATGGCCA
Found at i:22279485 original size:46 final size:46
Alignment explanation
Indices: 22279396--22279486 Score: 119
Period size: 46 Copynumber: 2.0 Consensus size: 46
22279386 GAACATGAAT
* * * *
22279396 ATATGTGGTAAGGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTACGAGATGG
* * *
22279442 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTACGAGATG
1 ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTACGAGATG
22279487 TGTATATATA
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
46 38 1.00
ACGTcount: A:0.33, C:0.10, G:0.32, T:0.25
Consensus pattern (46 bp):
ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTACGAGATGG
Found at i:22279493 original size:141 final size:140
Alignment explanation
Indices: 22279036--22279471 Score: 466
Period size: 145 Copynumber: 3.0 Consensus size: 140
22279026 TTAGAATTTT
* * * * *
22279036 ATGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
1 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
* * * * *
22279101 CGTATATATATGTGTGATAAGGCCGAATGGCCACTGTGATGGATGTGAACATGCGTATGTGTGAT
66 TG-A-ATATA--TGTGATAAGGCCGAATGGCCAATGCGA-GAACGTGAACATGCGTATGTGTGAT
* *
22279166 AAGGCCGAATGGCCA
126 AAAGCCAAATGGCCA
* ** * *
22279181 ATGTGATGAATGTGTACCCGTATATATTTGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTG
1 ATGTGATGAATGTGAACATGCATATA----TGAGATAAGGCCGAATGGCCAATGTGATGAATGTG
** * * *
22279246 AACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGAT
62 AACATGAATATATGTGATAAGGCCGAATGGCCAATGCGA-GAACGTGAACATGCGTATGTGTGAT
* *
22279311 AAGGCCGAATGGCCA
126 AAAGCCAAATGGCCA
22279326 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
1 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
* * *
22279391 TGAATATATGTGGTAAGGCCGAATGGCTAATGCGA-AACGTGTATGAGATG-GATATGTG-G-TA
66 TGAATATATGTGATAAGGCCGAATGGCCAATGCGAGAACGTG-A--ACATGCG-TATGTGTGATA
*
22279452 AAGCCAAATGGCTA
127 AAGCCAAATGGCCA
22279466 ATGTGA
1 ATGTGA
22279472 GATATGTACG
Statistics
Matches: 253, Mismatches: 30, Indels: 21
0.83 0.10 0.07
Matches are distributed among these distances:
139 5 0.02
140 20 0.08
141 69 0.27
142 10 0.04
145 107 0.42
147 3 0.01
149 39 0.15
ACGTcount: A:0.31, C:0.12, G:0.31, T:0.26
Consensus pattern (140 bp):
ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
TGAATATATGTGATAAGGCCGAATGGCCAATGCGAGAACGTGAACATGCGTATGTGTGATAAAGC
CAAATGGCCA
Found at i:22279776 original size:37 final size:37
Alignment explanation
Indices: 22279631--22279775 Score: 254
Period size: 37 Copynumber: 3.9 Consensus size: 37
22279621 GGAAATATAT
22279631 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
22279668 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
22279705 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* * *
22279742 TCCGGGTAAGACCCGATAACTTCATGTGGAGATT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATT
22279776 TCGTCTGAGC
Statistics
Matches: 104, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 104 1.00
ACGTcount: A:0.24, C:0.19, G:0.31, T:0.26
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:22281228 original size:40 final size:40
Alignment explanation
Indices: 22281025--22281216 Score: 285
Period size: 40 Copynumber: 4.8 Consensus size: 40
22281015 GAGAATTGAG
22281025 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
22281065 AGTGATATATCTGGGCTAAGTCCCGAGGAGCATTTGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
22281105 AGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* **
22281145 AGTGATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
22281185 GGTGTTATATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCA
22281217 ATCATGCTGG
Statistics
Matches: 133, Mismatches: 19, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 133 1.00
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (40 bp):
AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:22281497 original size:58 final size:57
Alignment explanation
Indices: 22281428--22281536 Score: 155
Period size: 57 Copynumber: 1.9 Consensus size: 57
22281418 CGAATGATTA
* * *
22281428 GAGGCACTGTGTGTGCAAATTCTTTTAATCGAGCACTATGTGTGCGAAATCGGTAATT
1 GAGGCACTGTGTGTGCAAATTC-TTCAACCAAGCACTATGTGTGCGAAATCGGTAATT
* * *
22281486 GAGGCACTGTGTGTGCGAGTTCTTCAACCAAGCACTATGTGTGCGAGATCG
1 GAGGCACTGTGTGTGCAAATTCTTCAACCAAGCACTATGTGTGCGAAATCG
22281537 ATCACTGGGC
Statistics
Matches: 45, Mismatches: 6, Indels: 1
0.87 0.12 0.02
Matches are distributed among these distances:
57 25 0.56
58 20 0.44
ACGTcount: A:0.24, C:0.18, G:0.28, T:0.29
Consensus pattern (57 bp):
GAGGCACTGTGTGTGCAAATTCTTCAACCAAGCACTATGTGTGCGAAATCGGTAATT
Found at i:22283129 original size:85 final size:85
Alignment explanation
Indices: 22282986--22283164 Score: 349
Period size: 85 Copynumber: 2.1 Consensus size: 85
22282976 GGCCGGTCAT
22282986 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
22283051 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
22283071 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
22283136 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
*
22283156 GGGCATGGG
1 GAGCATGGG
22283165 CAATAAAATA
Statistics
Matches: 93, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
85 93 1.00
ACGTcount: A:0.37, C:0.08, G:0.28, T:0.26
Consensus pattern (85 bp):
GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
GTAAGGATTAATAAAATAAA
Found at i:22285400 original size:47 final size:47
Alignment explanation
Indices: 22285349--22285834 Score: 578
Period size: 47 Copynumber: 10.1 Consensus size: 47
22285339 TGAGGATTTT
* *
22285349 ATGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
**
22285396 ATGTGATGAATGTGAACCCGTATATATAT-TGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAA--C--ATGCATATGTGTGATAAGGCCGAATGGCCA
* * * * *
22285446 CTGTGATGGATGTGAACATGCGTATGTCTGACAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
* ** *
22285493 GTGTGATGAATGTGAACCCGTATATATGTGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAA--C--ATGCATATGTGTGATAAGGCCGAATGGCCA
* *
22285544 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCTGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
** * *
22285591 ATGTGATGAATGTGAACCTGTATATATATATGCGTGATAAGGTCGAATGGCCA
1 ATGTGATGAATGTGAA-C-----ATGCATATGTGTGATAAGGCCGAATGGCCA
*
22285644 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
* * *
22285691 ATGTGATGAATGTGAACATTCGTATGTGTGATAAGGCCGGATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
* *
22285738 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
* * * *
22285785 ATGTGATGAATGTGAACATGAATATATGTGGTAAGGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
22285832 ATG
1 ATG
22285835 CGAAACGTGT
Statistics
Matches: 377, Mismatches: 47, Indels: 30
0.83 0.10 0.07
Matches are distributed among these distances:
46 5 0.01
47 247 0.66
48 2 0.01
49 3 0.01
50 35 0.09
51 44 0.12
52 1 0.00
53 40 0.11
ACGTcount: A:0.30, C:0.13, G:0.30, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
Found at i:22285668 original size:100 final size:99
Alignment explanation
Indices: 22285349--22285834 Score: 694
Period size: 94 Copynumber: 5.0 Consensus size: 99
22285339 TGAGGATTTT
*
22285349 ATGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
22285414 CG-TATATATAT-TGTGATAAGGCCGAATGGCCA
66 CGATATATATATGTGTGATAAGGCCGAATGGCCA
* * * * *
22285446 CTGTGATGGATGTGAACATGCGTATGTCTGACAAGGCCGAATGGCCAGTGTGATGAATGTGAACC
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
*
22285511 CG-TATATATGTGTGTGATAAGGCCGAATGGCCA
66 CGATATATATATGTGTGATAAGGCCGAATGGCCA
*
22285544 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCTGAATGGCCAATGTGATGAATGTGAACC
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
* * *
22285609 TGTATATATATATGCGTGATAAGGTCGAATGGCCA
66 CG-ATATATATATGTGTGATAAGGCCGAATGGCCA
22285644 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA--
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
** *
22285707 C-AT-T-CGTATGTGTGATAAGGCCGGATGGCCA
66 CGATATATATATGTGTGATAAGGCCGAATGGCCA
* * *
22285738 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAA--
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
*
22285801 C-ATGA-ATATATGTG-G-TAAGGCCGAATGGCTA
66 CGAT-ATATATATGTGTGATAAGGCCGAATGGCCA
22285832 ATG
1 ATG
22285835 CGAAACGTGT
Statistics
Matches: 354, Mismatches: 29, Indels: 15
0.89 0.07 0.04
Matches are distributed among these distances:
94 102 0.29
95 2 0.01
96 8 0.02
97 71 0.20
98 81 0.23
100 90 0.25
ACGTcount: A:0.30, C:0.13, G:0.30, T:0.27
Consensus pattern (99 bp):
ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
CGATATATATATGTGTGATAAGGCCGAATGGCCA
Found at i:22285897 original size:46 final size:46
Alignment explanation
Indices: 22285808--22285898 Score: 119
Period size: 46 Copynumber: 2.0 Consensus size: 46
22285798 GAACATGAAT
* * * *
22285808 ATATGTGGTAAGGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTACGAGATGG
* * *
22285854 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTACGAGATG
1 ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTACGAGATG
22285899 TGTATATATA
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
46 38 1.00
ACGTcount: A:0.33, C:0.10, G:0.32, T:0.25
Consensus pattern (46 bp):
ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTACGAGATGG
Done.