Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 82679320
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4050000 characters in sequence are not A, C, G, or T
File 75 of 255
Found at i:22285905 original size:141 final size:140
Alignment explanation
Indices: 22285349--22285843 Score: 447
Period size: 147 Copynumber: 3.4 Consensus size: 140
22285339 TGAGGATTTT
* ** * * *
22285349 ATGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
1 ATGTGATGAATGTGAACATGAATATATGTGATAAGGCCGAATGGCCAATGCGA-GAACGTGAA--
* * * * * * * **
22285414 CGTATAT-ATAT-TGTGATAAGGCCGAATGGCCACTGTGATGGATGTGAACATGCGTATGTCTGA
63 C--AT-TCGTATGTGTGATAAAGCCAAATGGCCAATGTGATGAATGTGAACATGCATATATGAGA
*
22285477 CAAGGCCGAATGGCCA
125 TAAGGCCGAATGGCCA
* ** * * *
22285493 GTGTGATGAATGTGAACCCGTATATATGTGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTG
1 ATGTGATGAATGTGAACATG-A-ATA--TATGTGATAAGGCCGAATGGCCAATGCGA-GAACGTG
* * ** **
22285558 AACATGCGTATGTGTGATAAGGCTGAATGGCCAATGTGATGAATGTGAACCTGTATATATATATG
61 AACATTCGTATGTGTGATAAAGCCAAATGGCCAATGTGATGAATGTGAA-C---ATGCATATAT-
* *
22285623 CGTGATAAGGTCGAATGGCCA
121 -GAGATAAGGCCGAATGGCCA
** * * *
22285644 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
1 ATGTGATGAATGTGAACATGAATATATGTGATAAGGCCGAATGGCCAATGCGA-GAACGTGAACA
* **
22285709 TTCGTATGTGTGATAAGGCCGGATGGCCAATGTGATGAATGTGAACATGCATATATGAGATAAGG
65 TTCGTATGTGTGATAAAGCCAAATGGCCAATGTGATGAATGTGAACATGCATATATGAGATAAGG
22285774 CCGAATGGCCA
130 CCGAATGGCCA
* *
22285785 ATGTGATGAATGTGAACATGAATATATGTGGTAAGGCCGAATGGCTAATGCGA-AACGTG
1 ATGTGATGAATGTGAACATGAATATATGTGATAAGGCCGAATGGCCAATGCGAGAACGTG
22285844 TATGAGATGG
Statistics
Matches: 302, Mismatches: 37, Indels: 29
0.82 0.10 0.08
Matches are distributed among these distances:
139 5 0.02
141 65 0.22
143 8 0.03
144 21 0.07
145 34 0.11
146 5 0.02
147 83 0.27
148 39 0.13
149 8 0.03
151 34 0.11
ACGTcount: A:0.30, C:0.13, G:0.30, T:0.26
Consensus pattern (140 bp):
ATGTGATGAATGTGAACATGAATATATGTGATAAGGCCGAATGGCCAATGCGAGAACGTGAACAT
TCGTATGTGTGATAAAGCCAAATGGCCAATGTGATGAATGTGAACATGCATATATGAGATAAGGC
CGAATGGCCA
Found at i:22286190 original size:37 final size:37
Alignment explanation
Indices: 22286045--22286189 Score: 254
Period size: 37 Copynumber: 3.9 Consensus size: 37
22286035 GGAAATATAT
22286045 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
22286082 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
22286119 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* * *
22286156 TCCGGGTAAGACCCGATAACTTCATGTGGAGATT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATT
22286190 TCGTCTGAGC
Statistics
Matches: 104, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 104 1.00
ACGTcount: A:0.24, C:0.19, G:0.31, T:0.26
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:22299290 original size:22 final size:22
Alignment explanation
Indices: 22299265--22299308 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
22299255 CTCTTAGTTC
*
22299265 TTTAAG-TATTATCTTTATGGGT
1 TTTAAGCTATT-TCTTAATGGGT
*
22299287 TTTAGGCTATTTCTTAATGGGT
1 TTTAAGCTATTTCTTAATGGGT
22299309 ACTATCTATT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 15 0.79
23 4 0.21
ACGTcount: A:0.20, C:0.07, G:0.20, T:0.52
Consensus pattern (22 bp):
TTTAAGCTATTTCTTAATGGGT
Found at i:22299955 original size:75 final size:75
Alignment explanation
Indices: 22299832--22299981 Score: 300
Period size: 75 Copynumber: 2.0 Consensus size: 75
22299822 ATGGCCTTCT
22299832 GGGCCCACACAAATAAACTGTATTTTATCTGGTAAGTTTTGGATTGGGCTACGTCGTTCGTAGAG
1 GGGCCCACACAAATAAACTGTATTTTATCTGGTAAGTTTTGGATTGGGCTACGTCGTTCGTAGAG
22299897 CTGTGAATAG
66 CTGTGAATAG
22299907 GGGCCCACACAAATAAACTGTATTTTATCTGGTAAGTTTTGGATTGGGCTACGTCGTTCGTAGAG
1 GGGCCCACACAAATAAACTGTATTTTATCTGGTAAGTTTTGGATTGGGCTACGTCGTTCGTAGAG
22299972 CTGTGAATAG
66 CTGTGAATAG
22299982 TTCTGGGTTA
Statistics
Matches: 75, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
75 75 1.00
ACGTcount: A:0.25, C:0.16, G:0.27, T:0.32
Consensus pattern (75 bp):
GGGCCCACACAAATAAACTGTATTTTATCTGGTAAGTTTTGGATTGGGCTACGTCGTTCGTAGAG
CTGTGAATAG
Found at i:22300275 original size:27 final size:27
Alignment explanation
Indices: 22300234--22300426 Score: 158
Period size: 27 Copynumber: 7.1 Consensus size: 27
22300224 GGTCGTTAGG
22300234 CCCTCAGTTTG-AAAATTACCGAAATAC
1 CCCT-AGTTTGTAAAATTACCGAAATAC
*
22300261 CCCTAGTTTGTAAAATTATCGAAATAC
1 CCCTAGTTTGTAAAATTACCGAAATAC
** *
22300288 CCCCGGTTTGTAAAATTACTGAAATAC
1 CCCTAGTTTGTAAAATTACCGAAATAC
* * * **
22300315 CCTTGGTTTGAAAAATTACAAAAATAC
1 CCCTAGTTTGTAAAATTACCGAAATAC
* * * *
22300342 CCCCAATTTATAAAATTATCGAAATAC
1 CCCTAGTTTGTAAAATTACCGAAATAC
* * *
22300369 CCAT-GTAGTGTAAAAGTACCGAAATA-
1 CCCTAGT-TTGTAAAATTACCGAAATAC
* ** *
22300395 CCCTTGTAGCGTAAAATTACAGAAATAC
1 CCCTAGT-TTGTAAAATTACCGAAATAC
22300423 CCCT
1 CCCT
22300427 GTAGGGAAAA
Statistics
Matches: 132, Mismatches: 30, Indels: 7
0.78 0.18 0.04
Matches are distributed among these distances:
26 10 0.08
27 118 0.89
28 4 0.03
ACGTcount: A:0.39, C:0.21, G:0.12, T:0.28
Consensus pattern (27 bp):
CCCTAGTTTGTAAAATTACCGAAATAC
Found at i:22300411 original size:81 final size:81
Alignment explanation
Indices: 22300245--22300425 Score: 213
Period size: 81 Copynumber: 2.2 Consensus size: 81
22300235 CCTCAGTTTG
* * * * * * * *
22300245 AAAATTACCGAAATACCCCTAGTTTGTAAAATTATCGAAATACCCCCGGTTTGTAAAATTACTGA
1 AAAATTACAGAAATACCCCCAATTTATAAAATTATCGAAATACCCCAGGTGTGTAAAAGTACCGA
**
22300310 AATACCCTTGGTTTGA
66 AATACCCTTGGTGCGA
* *
22300326 AAAATTACAAAAATACCCCCAATTTATAAAATTATCGAAATA-CCCATGTAGTGTAAAAGTACCG
1 AAAATTACAGAAATACCCCCAATTTATAAAATTATCGAAATACCCCAGGT-GTGTAAAAGTACCG
*
22300390 AAATACCCTT-GTAGCGT
65 AAATACCCTTGGT-GCGA
22300407 AAAATTACAGAAATACCCC
1 AAAATTACAGAAATACCCC
22300426 TGTAGGGAAA
Statistics
Matches: 84, Mismatches: 14, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
80 7 0.08
81 77 0.92
ACGTcount: A:0.41, C:0.20, G:0.12, T:0.27
Consensus pattern (81 bp):
AAAATTACAGAAATACCCCCAATTTATAAAATTATCGAAATACCCCAGGTGTGTAAAAGTACCGA
AATACCCTTGGTGCGA
Found at i:22306247 original size:38 final size:38
Alignment explanation
Indices: 22306204--22306279 Score: 125
Period size: 38 Copynumber: 2.0 Consensus size: 38
22306194 TTCATCCTTT
*
22306204 TTCATTTCTTTTAGCCGAAAATTCTAAGGAAGGAGGAA
1 TTCATTTCTGTTAGCCGAAAATTCTAAGGAAGGAGGAA
* *
22306242 TTCATTTCTGTTGGTCGAAAATTCTAAGGAAGGAGGAA
1 TTCATTTCTGTTAGCCGAAAATTCTAAGGAAGGAGGAA
22306280 GGAGTTCTTG
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
38 35 1.00
ACGTcount: A:0.33, C:0.12, G:0.24, T:0.32
Consensus pattern (38 bp):
TTCATTTCTGTTAGCCGAAAATTCTAAGGAAGGAGGAA
Found at i:22307564 original size:40 final size:40
Alignment explanation
Indices: 22307470--22307614 Score: 175
Period size: 40 Copynumber: 3.6 Consensus size: 40
22307460 TACTCGAATG
* *
22307470 ATATCCGAGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGCGACT
* * *
22307511 ACATCCGGACTAAGAT-CCAAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGCGACT
* * *
22307551 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
* *
22307591 ATATCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
22307615 CTTGTGCGAG
Statistics
Matches: 89, Mismatches: 13, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
39 1 0.01
40 61 0.69
41 26 0.29
42 1 0.01
ACGTcount: A:0.27, C:0.25, G:0.25, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
Found at i:22309956 original size:38 final size:38
Alignment explanation
Indices: 22309913--22309988 Score: 152
Period size: 38 Copynumber: 2.0 Consensus size: 38
22309903 TTCATCCTTT
22309913 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
1 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
22309951 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
1 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
22309989 GGAGTTCTTG
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.32, C:0.13, G:0.24, T:0.32
Consensus pattern (38 bp):
TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
Found at i:22311271 original size:40 final size:40
Alignment explanation
Indices: 22311177--22311321 Score: 166
Period size: 40 Copynumber: 3.6 Consensus size: 40
22311167 TACTCGAATG
* * *
22311177 ATATCCGAGCTAAGTCCCGAAGGCTTTTGTGCTAAGGGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGCGACT
* * *
22311218 ACATTCGGACTAAGAT-CCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGCGACT
* * *
22311258 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
* *
22311298 ATATCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
22311322 CTTGTGCGAG
Statistics
Matches: 88, Mismatches: 14, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
39 1 0.01
40 60 0.68
41 26 0.30
42 1 0.01
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
Found at i:22313939 original size:44 final size:44
Alignment explanation
Indices: 22313793--22313959 Score: 166
Period size: 43 Copynumber: 3.9 Consensus size: 44
22313783 AGCTCGTATA
* *
22313793 ATGCCAACATCCCAGACGTGGTCTTACATGT-AATCA-AATATCG
1 ATGCCAACATCCCAGACATGGTCTTACACGTAAATCACAA-ATCG
* * * * *
22313836 ATGCC-ACTATCCTAGACAGGGTCTTACAC-AAAATCATATAT-G
1 ATGCCAAC-ATCCCAGACATGGTCTTACACGTAAATCACAAATCG
* **
22313878 ATGACAATGTCCCAGACATGGTCTTACACGTAAATCACAAATCG
1 ATGCCAACATCCCAGACATGGTCTTACACGTAAATCACAAATCG
* *
22313922 ATGCCAACGTCCCAGACATGGTCTTACACG-AAAACACA
1 ATGCCAACATCCCAGACATGGTCTTACACGTAAATCACA
22313960 TATCAGAATC
Statistics
Matches: 101, Mismatches: 17, Indels: 12
0.78 0.13 0.09
Matches are distributed among these distances:
42 25 0.25
43 46 0.46
44 30 0.30
ACGTcount: A:0.35, C:0.26, G:0.16, T:0.23
Consensus pattern (44 bp):
ATGCCAACATCCCAGACATGGTCTTACACGTAAATCACAAATCG
Found at i:22317351 original size:42 final size:43
Alignment explanation
Indices: 22317282--22317388 Score: 119
Period size: 43 Copynumber: 2.5 Consensus size: 43
22317272 TTAGATTTAT
* *
22317282 GTGTAAGACCATGTCTGGGACATTGGCATC-ACATTTGATTTC
1 GTGTAAGACCATGTCTGGGACAGTGGCATCGACATTTGATTAC
* * *
22317324 GTGTAAGACCCTGTTTAGGG-CAGTGGCATCGATATTTGATTAC
1 GTGTAAGACCATGTCT-GGGACAGTGGCATCGACATTTGATTAC
* * *
22317367 ATGTAAGACCACGTCTAGGACA
1 GTGTAAGACCATGTCTGGGACA
22317389 TTGGTATTGT
Statistics
Matches: 52, Mismatches: 10, Indels: 5
0.78 0.15 0.07
Matches are distributed among these distances:
42 25 0.48
43 27 0.52
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (43 bp):
GTGTAAGACCATGTCTGGGACAGTGGCATCGACATTTGATTAC
Found at i:22319022 original size:30 final size:31
Alignment explanation
Indices: 22318978--22319037 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 31
22318968 AGCTTCAACC
*
22318978 AGCTCACTTGAGCTT-GTTTCAACTCGTTTG
1 AGCTCAATTGAGCTTCGTTTCAACTCGTTTG
* * *
22319008 AGCTCAATTTAGCTTCTTTTCAGCTCGTTT
1 AGCTCAATTGAGCTTCGTTTCAACTCGTTT
22319038 CTTTTACTAT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
30 13 0.52
31 12 0.48
ACGTcount: A:0.17, C:0.23, G:0.17, T:0.43
Consensus pattern (31 bp):
AGCTCAATTGAGCTTCGTTTCAACTCGTTTG
Found at i:22322794 original size:15 final size:15
Alignment explanation
Indices: 22322774--22322803 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
22322764 AAAAGAAAGT
22322774 GAAAATGAAAAAGAA
1 GAAAATGAAAAAGAA
*
22322789 GAAAATGAAAGAGAA
1 GAAAATGAAAAAGAA
22322804 AAGCAAGAGA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.70, C:0.00, G:0.23, T:0.07
Consensus pattern (15 bp):
GAAAATGAAAAAGAA
Found at i:22328471 original size:28 final size:29
Alignment explanation
Indices: 22328375--22328473 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 29
22328365 CATGAGATTG
* *
22328375 GCACTAAGTGTGCGGGTTCAAAT-TGTATA
1 GCACTAAGTGTGCGAGTTCGAATAT-TATA
* * *
22328404 GCACTAAGTGTACGAGTTTGATTA-TATA
1 GCACTAAGTGTGCGAGTTCGAATATTATA
*
22328432 GCACTAAGTGTGCGAGTTCGACTATTA-A
1 GCACTAAGTGTGCGAGTTCGAATATTATA
22328460 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
22328474 GGCTTATTAT
Statistics
Matches: 60, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
28 40 0.67
29 20 0.33
ACGTcount: A:0.28, C:0.15, G:0.26, T:0.30
Consensus pattern (29 bp):
GCACTAAGTGTGCGAGTTCGAATATTATA
Found at i:22332000 original size:30 final size:31
Alignment explanation
Indices: 22331966--22332024 Score: 84
Period size: 30 Copynumber: 1.9 Consensus size: 31
22331956 AGCTCCAACC
*
22331966 AGCTCACTTGAGCTT-GTTTTAGCTCGTTTG
1 AGCTCAATTGAGCTTCGTTTTAGCTCGTTTG
* *
22331996 AGCTCAATTTAGCTTCTTTTTAGCTCGTT
1 AGCTCAATTGAGCTTCGTTTTAGCTCGTT
22332025 CCTTTTACTA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
30 13 0.52
31 12 0.48
ACGTcount: A:0.15, C:0.20, G:0.19, T:0.46
Consensus pattern (31 bp):
AGCTCAATTGAGCTTCGTTTTAGCTCGTTTG
Found at i:22335507 original size:42 final size:43
Alignment explanation
Indices: 22335413--22335564 Score: 161
Period size: 43 Copynumber: 3.6 Consensus size: 43
22335403 TACAATGCCA
* * *
22335413 ATGTCCCAGACGTGGTCTTACATGTAACTCAATATCGATGCCT-
1 ATGTCCCAGACATGGTCTTACACGTAAATCAATA-CGATGCCTG
* *
22335456 CTGTCCCAGACAAGGTCTTACACG-AAATCAGATACGATG-CTG
1 ATGTCCCAGACATGGTCTTACACGTAAATCA-ATACGATGCCTG
* *
22335498 ATGTCCCAGACATGGTCTTATACGTAAATCTCAAT-CGAGGCCTG
1 ATGTCCCAGACATGGTCTTACACGTAAA--TCAATACGATGCCTG
*
22335542 -TGTCCCAGACACGGTCTTACACG
1 ATGTCCCAGACATGGTCTTACACG
22335565 ATGTCTCAGA
Statistics
Matches: 92, Mismatches: 11, Indels: 12
0.80 0.10 0.10
Matches are distributed among these distances:
41 2 0.02
42 31 0.34
43 51 0.55
44 5 0.05
45 3 0.03
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.26
Consensus pattern (43 bp):
ATGTCCCAGACATGGTCTTACACGTAAATCAATACGATGCCTG
Found at i:22350203 original size:40 final size:40
Alignment explanation
Indices: 22350113--22350253 Score: 167
Period size: 40 Copynumber: 3.5 Consensus size: 40
22350103 CGAATGATAC
* *
22350113 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGCGACTATAT
* *
22350154 TCGGACTAAGAT-CCGAAGGCATTTGTGCTAGCGACTATAT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGCGACTATAT
* * *
22350194 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACTATAT
* * *
22350234 CCGGGTTAAGACTCGAAGGC
1 CCGGGCTAAGTCCCGAAGGC
22350254 CTTGTGCGAG
Statistics
Matches: 86, Mismatches: 12, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
39 1 0.01
40 60 0.70
41 24 0.28
42 1 0.01
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACTATAT
Found at i:22354106 original size:39 final size:39
Alignment explanation
Indices: 22354056--22354139 Score: 141
Period size: 39 Copynumber: 2.2 Consensus size: 39
22354046 GACTTAATGT
*
22354056 CTAGCAGGCCTCGTGCCGGTGATAAATTCAGGTTTATAC
1 CTAGCAAGCCTCGTGCCGGTGATAAATTCAGGTTTATAC
* *
22354095 CTAGCAAGCCTCGTGCCGGTGATAAGTTTAGGTTTATAC
1 CTAGCAAGCCTCGTGCCGGTGATAAATTCAGGTTTATAC
22354134 CTAGCA
1 CTAGCA
22354140 GGCTAATTAC
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 42 1.00
ACGTcount: A:0.24, C:0.23, G:0.25, T:0.29
Consensus pattern (39 bp):
CTAGCAAGCCTCGTGCCGGTGATAAATTCAGGTTTATAC
Found at i:22358413 original size:80 final size:80
Alignment explanation
Indices: 22358302--22358482 Score: 219
Period size: 80 Copynumber: 2.3 Consensus size: 80
22358292 ACTCATAAAT
** *
22358302 GCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACGAATGCCTTCGGGA-CTTAACCCGGA-AT
1 GCCTTCGGGACTTAACCCGGATACTAAAACTCGCACAAATGCCTTC-GGATCTTAACCCGGATA-
*
22358365 TAGT-A-TCTCGCACAAA
64 TAGTCACT-TAGCACAAA
**
22358381 GGCCTTCGGGACTTAACCCGGA-ACTAATAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATA
1 -GCCTTCGGGACTTAACCCGGATACTAA-AACTCGCACAAATGCCTTCGGATCTTAACCCGGATA
22358445 TAGTCACTTAGCACAAA
64 TAGTCACTTAGCACAAA
*
22358462 GCCTTCGGGACTTAGCCCGGA
1 GCCTTCGGGACTTAACCCGGA
22358483 CAGCATTCAA
Statistics
Matches: 89, Mismatches: 7, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
79 6 0.07
80 72 0.81
81 10 0.11
82 1 0.01
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (80 bp):
GCCTTCGGGACTTAACCCGGATACTAAAACTCGCACAAATGCCTTCGGATCTTAACCCGGATATA
GTCACTTAGCACAAA
Found at i:22358442 original size:40 final size:40
Alignment explanation
Indices: 22358298--22358482 Score: 189
Period size: 40 Copynumber: 4.6 Consensus size: 40
22358288 AGTAACTCAT
**
22358298 AAATGCCTTCGGGACTTAACCCGGATTTTAA-AACTCGCAC
1 AAATGCCTTCGGGACTTAACCCGGA-ACTAATAACTCGCAC
* * * *
22358338 GAATGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCAC
1 AAATGCCTTCGGGACTTAACCCGGAACTAATAACTCGCAC
*
22358378 AAAGGCCTTCGGGACTTAACCCGGAACTAATAACTCGCAC
1 AAATGCCTTCGGGACTTAACCCGGAACTAATAACTCGCAC
** * * *
22358418 AAATGCCTTC-GGATCTTAGTCCGGATA-TAGTCACTTAGCAC
1 AAATGCCTTCGGGA-CTTAACCCGGA-ACTAATAAC-TCGCAC
*
22358459 AAA-GCCTTCGGGACTTAGCCCGGA
1 AAATGCCTTCGGGACTTAACCCGGA
22358483 CAGCATTCAA
Statistics
Matches: 124, Mismatches: 16, Indels: 10
0.83 0.11 0.07
Matches are distributed among these distances:
39 6 0.05
40 106 0.85
41 12 0.10
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (40 bp):
AAATGCCTTCGGGACTTAACCCGGAACTAATAACTCGCAC
Found at i:22375321 original size:12 final size:13
Alignment explanation
Indices: 22375304--22375335 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
22375294 GCAAATGTTA
22375304 AGTTTTG-TGCAT
1 AGTTTTGATGCAT
22375316 AGTTTTGATGCAT
1 AGTTTTGATGCAT
22375329 -GTTTTGA
1 AGTTTTGA
22375336 AATGTGCTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 14 0.74
13 5 0.26
ACGTcount: A:0.19, C:0.06, G:0.25, T:0.50
Consensus pattern (13 bp):
AGTTTTGATGCAT
Found at i:22375561 original size:13 final size:13
Alignment explanation
Indices: 22375543--22375576 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
22375533 GCTAAATTTT
*
22375543 ACACGGTCATAGC
1 ACACGGCCATAGC
*
22375556 ACACGGCCATGGC
1 ACACGGCCATAGC
22375569 ACACGGCC
1 ACACGGCC
22375577 GTGTCTATTG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.26, C:0.38, G:0.26, T:0.09
Consensus pattern (13 bp):
ACACGGCCATAGC
Found at i:22382544 original size:12 final size:13
Alignment explanation
Indices: 22382527--22382558 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
22382517 GCAAATGTTA
22382527 AGTTTTG-TGCAT
1 AGTTTTGATGCAT
22382539 AGTTTTGATGCAT
1 AGTTTTGATGCAT
22382552 -GTTTTGA
1 AGTTTTGA
22382559 AATGTGCTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 14 0.74
13 5 0.26
ACGTcount: A:0.19, C:0.06, G:0.25, T:0.50
Consensus pattern (13 bp):
AGTTTTGATGCAT
Found at i:22386914 original size:13 final size:13
Alignment explanation
Indices: 22386898--22386931 Score: 68
Period size: 13 Copynumber: 2.6 Consensus size: 13
22386888 AATAAAATAA
22386898 TAAAATATCTTAT
1 TAAAATATCTTAT
22386911 TAAAATATCTTAT
1 TAAAATATCTTAT
22386924 TAAAATAT
1 TAAAATAT
22386932 TAATAAAATA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.50, C:0.06, G:0.00, T:0.44
Consensus pattern (13 bp):
TAAAATATCTTAT
Found at i:22395461 original size:40 final size:40
Alignment explanation
Indices: 22395377--22395597 Score: 202
Period size: 40 Copynumber: 5.5 Consensus size: 40
22395367 TTGAATGCTG
* * *
22395377 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
** * *
22395416 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTATTAGT
1 -TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
22395457 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTAAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* * *
22395497 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AAT
**
22395537 TCCGGGTTAAGTCCCGAAGGCA-TTGTATGAGTTACT-AT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* * *
22395575 AACCGGGCTATGTCCCGAAGGCA
1 -TCCGGGTTAAGTCCCGAAGGCA
22395598 CTTGAACGAG
Statistics
Matches: 150, Mismatches: 24, Indels: 15
0.79 0.13 0.08
Matches are distributed among these distances:
38 1 0.01
39 29 0.19
40 111 0.74
41 9 0.06
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:22403411 original size:37 final size:38
Alignment explanation
Indices: 22403307--22403485 Score: 150
Period size: 40 Copynumber: 4.6 Consensus size: 38
22403297 TTGAATGCTG
* * * * *
22403307 TCCGGGCTAAGTCCGAAGGCTTTGTGCTAAGTGACT-AT
1 TCCGGGTTAAGTCCGAAGGCATTGTGC-GAGTTATTAAT
** *
22403345 ATCCGGACTAAGAT-CGAAGGCATTTGTGCGAGTTATTAGT
1 -TCCGGGTTAAG-TCCGAAGGCA-TTGTGCGAGTTATTAAT
* * *
22403385 TCCGGGTTAAGTCCG-AGGCCTTGTGCGAGATACTAAT
1 TCCGGGTTAAGTCCGAAGGCATTGTGCGAGTTATTAAT
*
22403422 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAAAA
1 TCCGGGTTAAGT-CCGAAGGCATT-GTGCGAGTTATT-AAT
22403462 TCCGGGTTAAGTCCCGAAGGCATT
1 TCCGGGTTAAGT-CCGAAGGCATT
22403486 TATGAGTTAC
Statistics
Matches: 116, Mismatches: 16, Indels: 15
0.79 0.11 0.10
Matches are distributed among these distances:
37 26 0.22
38 8 0.07
39 40 0.34
40 42 0.36
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.28
Consensus pattern (38 bp):
TCCGGGTTAAGTCCGAAGGCATTGTGCGAGTTATTAAT
Found at i:22403505 original size:38 final size:39
Alignment explanation
Indices: 22403422--22403521 Score: 114
Period size: 38 Copynumber: 2.6 Consensus size: 39
22403412 AGATACTAAT
* *
22403422 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTTTAAAA
1 TCCGGGTTAAGTCCCGAAGGCATTC-TACGAGTTCTAAAA
* *
22403462 TCCGGGTTAAGTCCCGAAGGCATT-TATGAGTTACTATAA
1 TCCGGGTTAAGTCCCGAAGGCATTCTACGAGTT-CTAAAA
* *
22403501 -CCGGGCTATGTCCCGAAGGCA
1 TCCGGGTTAAGTCCCGAAGGCA
22403522 CTTGAACGAG
Statistics
Matches: 53, Mismatches: 6, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
38 25 0.47
39 4 0.08
40 24 0.45
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (39 bp):
TCCGGGTTAAGTCCCGAAGGCATTCTACGAGTTCTAAAA
Found at i:22419965 original size:28 final size:29
Alignment explanation
Indices: 22419934--22420038 Score: 101
Period size: 29 Copynumber: 3.7 Consensus size: 29
22419924 AACGTTTTAT
*
22419934 GGCCC-AATCATATTCATATGGCCCATTA
1 GGCCCAAATCACATTCATATGGCCCATTA
22419962 GGCCCAAATCACCTATT--TATGGCCCATTA
1 GGCCCAAATCA-C-ATTCATATGGCCCATTA
* * **
22419991 GGCCCAAATCACGTTTATATGGCCTGTTA
1 GGCCCAAATCACATTCATATGGCCCATTA
* *
22420020 GG-CCTAGTCACATTCATAT
1 GGCCCAAATCACATTCATAT
22420039 TCATGCCCAC
Statistics
Matches: 64, Mismatches: 8, Indels: 10
0.78 0.10 0.12
Matches are distributed among these distances:
27 2 0.03
28 19 0.30
29 40 0.62
31 3 0.05
ACGTcount: A:0.27, C:0.28, G:0.16, T:0.30
Consensus pattern (29 bp):
GGCCCAAATCACATTCATATGGCCCATTA
Found at i:22420011 original size:29 final size:30
Alignment explanation
Indices: 22419944--22420023 Score: 110
Period size: 29 Copynumber: 2.7 Consensus size: 30
22419934 GGCCCAATCA
22419944 TATTCATATGGCCCATTAGGCCCAAATCACC
1 TATT-ATATGGCCCATTAGGCCCAAATCACC
*
22419975 TATT-TATGGCCCATTAGGCCCAAATCACG
1 TATTATATGGCCCATTAGGCCCAAATCACC
**
22420004 T-TTATATGGCCTGTTAGGCC
1 TATTATATGGCCCATTAGGCC
22420024 TAGTCACATT
Statistics
Matches: 45, Mismatches: 3, Indels: 4
0.87 0.06 0.08
Matches are distributed among these distances:
28 2 0.04
29 39 0.87
31 4 0.09
ACGTcount: A:0.25, C:0.28, G:0.17, T:0.30
Consensus pattern (30 bp):
TATTATATGGCCCATTAGGCCCAAATCACC
Found at i:22420140 original size:19 final size:19
Alignment explanation
Indices: 22420116--22420161 Score: 83
Period size: 19 Copynumber: 2.4 Consensus size: 19
22420106 AGCCCATCGA
22420116 GCCCATTTAGCCCATTCCG
1 GCCCATTTAGCCCATTCCG
*
22420135 GCCCATTTAGCCCATTCTG
1 GCCCATTTAGCCCATTCCG
22420154 GCCCATTT
1 GCCCATTT
22420162 GTCCAAATCA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 26 1.00
ACGTcount: A:0.15, C:0.39, G:0.15, T:0.30
Consensus pattern (19 bp):
GCCCATTTAGCCCATTCCG
Found at i:22421617 original size:16 final size:16
Alignment explanation
Indices: 22421593--22421624 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
22421583 AAGTTCGAGA
22421593 TTTCAGGATTTTTGGG
1 TTTCAGGATTTTTGGG
*
22421609 TTTCGGGATTTTTGGG
1 TTTCAGGATTTTTGGG
22421625 GTGTTACAAG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.09, C:0.06, G:0.34, T:0.50
Consensus pattern (16 bp):
TTTCAGGATTTTTGGG
Found at i:22421954 original size:22 final size:22
Alignment explanation
Indices: 22421911--22421954 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
22421901 TACCTTCATA
*
22421911 CTTTAAACCTTCAAACCGAACT
1 CTTTAAACCTTCAAACCAAACT
* * *
22421933 CTTTAAATCTTGATACCAAACT
1 CTTTAAACCTTCAAACCAAACT
22421955 TAAATTTTGG
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.36, C:0.27, G:0.05, T:0.32
Consensus pattern (22 bp):
CTTTAAACCTTCAAACCAAACT
Found at i:22422729 original size:12 final size:12
Alignment explanation
Indices: 22422708--22422745 Score: 58
Period size: 12 Copynumber: 3.2 Consensus size: 12
22422698 ACATTATTTG
*
22422708 AAAAAGATAAAT
1 AAAAAAATAAAT
22422720 AAAAAAATAAAT
1 AAAAAAATAAAT
*
22422732 TAAAAAATAAAT
1 AAAAAAATAAAT
22422744 AA
1 AA
22422746 GACCATAAGT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.79, C:0.00, G:0.03, T:0.18
Consensus pattern (12 bp):
AAAAAAATAAAT
Found at i:22426236 original size:41 final size:41
Alignment explanation
Indices: 22426179--22426262 Score: 159
Period size: 41 Copynumber: 2.0 Consensus size: 41
22426169 CTATACATGC
22426179 CATAGGTTTGAAAGTTTGCTTATTAAAATACCGAAGACAGT
1 CATAGGTTTGAAAGTTTGCTTATTAAAATACCGAAGACAGT
*
22426220 CATAGGTTTGAAAGTTTTCTTATTAAAATACCGAAGACAGT
1 CATAGGTTTGAAAGTTTGCTTATTAAAATACCGAAGACAGT
22426261 CA
1 CA
22426263 ATAGTGTGAT
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 42 1.00
ACGTcount: A:0.37, C:0.13, G:0.18, T:0.32
Consensus pattern (41 bp):
CATAGGTTTGAAAGTTTGCTTATTAAAATACCGAAGACAGT
Found at i:22426726 original size:50 final size:50
Alignment explanation
Indices: 22426651--22426912 Score: 398
Period size: 50 Copynumber: 5.2 Consensus size: 50
22426641 CACTCATTTA
* * * *
22426651 GCCGAATACACAAGATCAAATATAACATCACATGTGTACATACCTATATG
1 GCCGAATATACAAGATCAAATATAACATCACATATGTACAAACCTATGTG
* * * *
22426701 GCCGAATATACAAGATCAAACATAACATCATATATATACATACCTATGTG
1 GCCGAATATACAAGATCAAATATAACATCACATATGTACAAACCTATGTG
*
22426751 GCCAAATATACAAGATCAAATATAACATCACATATGTACAAACCTATGTG
1 GCCGAATATACAAGATCAAATATAACATCACATATGTACAAACCTATGTG
* *
22426801 GCCAAATATACAAGATCAAATATAACATCACATATGTACACACCTATGTG
1 GCCGAATATACAAGATCAAATATAACATCACATATGTACAAACCTATGTG
* *
22426851 GCCGAATATACAAGATCAAAAATAACATCACATATGTACAAACCTATGTT
1 GCCGAATATACAAGATCAAATATAACATCACATATGTACAAACCTATGTG
*
22426901 GCTGAATATACA
1 GCCGAATATACA
22426913 TGGTCATTTA
Statistics
Matches: 195, Mismatches: 17, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
50 195 1.00
ACGTcount: A:0.44, C:0.21, G:0.11, T:0.24
Consensus pattern (50 bp):
GCCGAATATACAAGATCAAATATAACATCACATATGTACAAACCTATGTG
Found at i:22427765 original size:15 final size:15
Alignment explanation
Indices: 22427742--22427771 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
22427732 ATCAAAACTC
22427742 TAATACAAAACATAT
1 TAATACAAAACATAT
*
22427757 TAATCCAAAACATAT
1 TAATACAAAACATAT
22427772 CTTTTATAAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.57, C:0.17, G:0.00, T:0.27
Consensus pattern (15 bp):
TAATACAAAACATAT
Found at i:22434638 original size:50 final size:50
Alignment explanation
Indices: 22434555--22434814 Score: 407
Period size: 50 Copynumber: 5.2 Consensus size: 50
22434545 CACTCATTTA
* * *
22434555 GCCGAATACACAAGATCAAATATAACATTACATATGTACATACCTATATG
1 GCCGAATATACAAGATCAAATATAACATCACATATGTACATACCTATGTG
* *
22434605 GCCAAATATACAAGATCAAACATAACATCACATATGTACATACCTATGTG
1 GCCGAATATACAAGATCAAATATAACATCACATATGTACATACCTATGTG
* *
22434655 GCCGAATATACAAGATCAAATATAGCATCACATATGTACATACCGT-TGGG
1 GCCGAATATACAAGATCAAATATAACATCACATATGTACATACC-TATGTG
* *
22434705 GCCTAATATACAAGATCAAATATAACATCACATATGTACTTACCTATGT-
1 GCCGAATATACAAGATCAAATATAACATCACATATGTACATACCTATGTG
22434754 GCCGAATATACAAGATCAAATATAACATCACATATGTACATACCTATGTG
1 GCCGAATATACAAGATCAAATATAACATCACATATGTACATACCTATGTG
*
22434804 TCCGAATATAC
1 GCCGAATATAC
22434815 TTGGTCATTT
Statistics
Matches: 191, Mismatches: 16, Indels: 6
0.90 0.08 0.03
Matches are distributed among these distances:
49 48 0.25
50 142 0.74
51 1 0.01
ACGTcount: A:0.42, C:0.21, G:0.12, T:0.26
Consensus pattern (50 bp):
GCCGAATATACAAGATCAAATATAACATCACATATGTACATACCTATGTG
Found at i:22437692 original size:42 final size:41
Alignment explanation
Indices: 22437584--22437698 Score: 115
Period size: 44 Copynumber: 2.7 Consensus size: 41
22437574 TTTCGATATG
* * *
22437584 TGATTTCATGTAAGACCAC-GTCTAGGACATTGGCATCGATT
1 TGATTTCGTGTAAGACC-CTGTCTAGGACATCGACATCGATT
* * *
22437625 TGATATTTACGTGTAAGACCATGTCTTGGACATCGACGTCGTATT
1 TG--ATTT-CGTGTAAGACCCTGTCTAGGACATCGACATCG-ATT
*
22437670 TGATTTCGTGTAAGACCCTGTCTGGGACA
1 TGATTTCGTGTAAGACCCTGTCTAGGACA
22437699 GTGGCATCAA
Statistics
Matches: 61, Mismatches: 8, Indels: 9
0.78 0.10 0.12
Matches are distributed among these distances:
41 2 0.03
42 21 0.34
43 8 0.13
44 25 0.41
45 5 0.08
ACGTcount: A:0.24, C:0.19, G:0.23, T:0.33
Consensus pattern (41 bp):
TGATTTCGTGTAAGACCCTGTCTAGGACATCGACATCGATT
Found at i:22445351 original size:44 final size:41
Alignment explanation
Indices: 22445297--22445461 Score: 163
Period size: 43 Copynumber: 3.9 Consensus size: 41
22445287 TTCCGATATG
22445297 TGATTTCGTGTAAGACCACGTCTGGGACATTGGCATCGATT
1 TGATTTCGTGTAAGACCACGTCTGGGACATTGGCATCGATT
* * *
22445338 TGAGATTTACGTGTAAGACTATGTCTTGGACATTGGCATCGTATT
1 T--GATTT-CGTGTAAGACCACGTCTGGGACATTGGCATCG-ATT
* * *
22445383 TGATTTCGTGTAAGGCC-CTGTCCGGGACAGTGGCATCGATATT
1 TGATTTCGTGTAAGACCAC-GTCTGGGACATTGGCATCG--ATT
* * *
22445426 TGATTAT-ATGTAAGACCACATCTGGGACGTTGGCAT
1 TGATT-TCGTGTAAGACCACGTCTGGGACATTGGCAT
22445462 TGTACGAGCT
Statistics
Matches: 101, Mismatches: 15, Indels: 14
0.78 0.12 0.11
Matches are distributed among these distances:
41 1 0.01
42 25 0.25
43 40 0.40
44 31 0.31
45 4 0.04
ACGTcount: A:0.23, C:0.18, G:0.27, T:0.33
Consensus pattern (41 bp):
TGATTTCGTGTAAGACCACGTCTGGGACATTGGCATCGATT
Found at i:22451616 original size:48 final size:48
Alignment explanation
Indices: 22451545--22451640 Score: 192
Period size: 48 Copynumber: 2.0 Consensus size: 48
22451535 TAGCTAAAGT
22451545 CAGTTAAAGAATTCATTATTTATAGTAATGCATCATTAAATAGTTTGG
1 CAGTTAAAGAATTCATTATTTATAGTAATGCATCATTAAATAGTTTGG
22451593 CAGTTAAAGAATTCATTATTTATAGTAATGCATCATTAAATAGTTTGG
1 CAGTTAAAGAATTCATTATTTATAGTAATGCATCATTAAATAGTTTGG
22451641 GTTGTGTTTT
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 48 1.00
ACGTcount: A:0.38, C:0.08, G:0.15, T:0.40
Consensus pattern (48 bp):
CAGTTAAAGAATTCATTATTTATAGTAATGCATCATTAAATAGTTTGG
Found at i:22463053 original size:28 final size:28
Alignment explanation
Indices: 22462968--22463056 Score: 115
Period size: 28 Copynumber: 3.2 Consensus size: 28
22462958 TGGGAAGTAG
* * *
22462968 TTGGGCCTAATGGTCCATATGAATGTGG
1 TTGGGCCTGATGGGCCATATGAATGTGA
*
22462996 TTGGGCTTGATGGGCCATATGAATGTGA
1 TTGGGCCTGATGGGCCATATGAATGTGA
* * *
22463024 TTGGGCCTGATGGGCCATGTGAACGAGA
1 TTGGGCCTGATGGGCCATATGAATGTGA
22463052 TTGGG
1 TTGGG
22463057 TCTAAAGGGA
Statistics
Matches: 53, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
28 53 1.00
ACGTcount: A:0.20, C:0.13, G:0.37, T:0.29
Consensus pattern (28 bp):
TTGGGCCTGATGGGCCATATGAATGTGA
Found at i:22463406 original size:27 final size:27
Alignment explanation
Indices: 22463376--22463632 Score: 251
Period size: 27 Copynumber: 9.7 Consensus size: 27
22463366 TAATAAAGAG
*
22463376 AAATTACTGAAATACCATCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
*
22463403 AAATTACCT-AAATACCCCCGATTTGTA
1 AAATTA-CTGAAATACCCTCGATTTGTA
*
22463430 AAATTACCGAAATACCCTCGATTATG--
1 AAATTACTGAAATACCCTCGATT-TGTA
*
22463456 AAATTACTAAAATACCCTCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
*
22463483 AAATTACCGAAATACCCTCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* * * * * * *
22463510 AAATCATTGAAACACCAT-TAATTATA
1 AAATTACTGAAATACCCTCGATTTGTA
**
22463536 AAATTACCAAAATACCCTCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
**
22463563 AAATTACCAAAATACCCTCGATTT-T-
1 AAATTACTGAAATACCCTCGATTTGTA
* *
22463588 AAATTA-TCGAAATACCCTTG-TAGTGTA
1 AAATTACT-GAAATACCCTCGAT-TTGTA
*
22463615 AAATTATTGAAATACCCT
1 AAATTACTGAAATACCCT
22463633 TGTAGTGTAA
Statistics
Matches: 190, Mismatches: 29, Indels: 22
0.79 0.12 0.09
Matches are distributed among these distances:
24 1 0.01
25 19 0.10
26 41 0.22
27 124 0.65
28 5 0.03
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.31
Consensus pattern (27 bp):
AAATTACTGAAATACCCTCGATTTGTA
Found at i:22463479 original size:53 final size:53
Alignment explanation
Indices: 22463376--22463605 Score: 254
Period size: 53 Copynumber: 4.3 Consensus size: 53
22463366 TAATAAAGAG
* * *
22463376 AAATTACTGAAATACCATCGATTTGTAAAATTACCT-AAATACCCCCGATTTGTA
1 AAATTACCGAAATACCCTCGATTTG-AAAATTA-CTAAAATACCCTCGATTTGTA
22463430 AAATTACCGAAATACCCTCGATTATG-AAATTACTAAAATACCCTCGATTTGTA
1 AAATTACCGAAATACCCTCGATT-TGAAAATTACTAAAATACCCTCGATTTGTA
* * * * * * * *
22463483 AAATTACCGAAATACCCTCGATTTGTAAAATCATTGAAACACCAT-TAATTATA
1 AAATTACCGAAATACCCTCGATTTG-AAAATTACTAAAATACCCTCGATTTGTA
* *
22463536 AAATTACCAAAATACCCTCGATTTGTAAAATTACCAAAATACCCTCGATTT-T-
1 AAATTACCGAAATACCCTCGATTTG-AAAATTACTAAAATACCCTCGATTTGTA
*
22463588 AAATTATCGAAATACCCT
1 AAATTACCGAAATACCCT
22463606 TGTAGTGTAA
Statistics
Matches: 149, Mismatches: 22, Indels: 12
0.81 0.12 0.07
Matches are distributed among these distances:
52 20 0.13
53 90 0.60
54 37 0.25
55 2 0.01
ACGTcount: A:0.41, C:0.21, G:0.08, T:0.30
Consensus pattern (53 bp):
AAATTACCGAAATACCCTCGATTTGAAAATTACTAAAATACCCTCGATTTGTA
Found at i:22463508 original size:80 final size:80
Alignment explanation
Indices: 22463375--22463605 Score: 322
Period size: 80 Copynumber: 2.9 Consensus size: 80
22463365 ATAATAAAGA
* * * * *
22463375 GAAATTACTGAAATACCATCGATTTGTAAAATTACCTAAATACCCCCGATTTGTAAAATTACCGA
1 GAAATTACTAAAATACCCTCGATTTGTAAAATTACCAAAATACCCTCGATTTGTAAAATTATCGA
*
22463440 AATACCCTCGATTAT
66 AATACCCTCAATTAT
* * *
22463455 GAAATTACTAAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCGATTTGTAAAATCATTGA
1 GAAATTACTAAAATACCCTCGATTTGTAAAATTACCAAAATACCCTCGATTTGTAAAATTATCGA
* * *
22463520 AACACCATTAATTAT
66 AATACCCTCAATTAT
* *
22463535 AAAATTACCAAAATACCCTCGATTTGTAAAATTACCAAAATACCCTCGATTT-T-AAATTATCGA
1 GAAATTACTAAAATACCCTCGATTTGTAAAATTACCAAAATACCCTCGATTTGTAAAATTATCGA
22463598 AATACCCT
66 AATACCCT
22463606 TGTAGTGTAA
Statistics
Matches: 133, Mismatches: 18, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
78 14 0.11
79 1 0.01
80 118 0.89
ACGTcount: A:0.41, C:0.21, G:0.08, T:0.30
Consensus pattern (80 bp):
GAAATTACTAAAATACCCTCGATTTGTAAAATTACCAAAATACCCTCGATTTGTAAAATTATCGA
AATACCCTCAATTAT
Found at i:22463633 original size:27 final size:27
Alignment explanation
Indices: 22463588--22463645 Score: 107
Period size: 27 Copynumber: 2.1 Consensus size: 27
22463578 CCTCGATTTT
22463588 AAATTATCGAAATACCCTTGTAGTGTA
1 AAATTATCGAAATACCCTTGTAGTGTA
*
22463615 AAATTATTGAAATACCCTTGTAGTGTA
1 AAATTATCGAAATACCCTTGTAGTGTA
22463642 AAAT
1 AAAT
22463646 GACCGACATA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.40, C:0.12, G:0.14, T:0.34
Consensus pattern (27 bp):
AAATTATCGAAATACCCTTGTAGTGTA
Found at i:22476908 original size:15 final size:15
Alignment explanation
Indices: 22476888--22476943 Score: 78
Period size: 15 Copynumber: 3.7 Consensus size: 15
22476878 GTATCTTAGG
22476888 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
22476903 TTTCTTTATTCTGGG
1 TTTCTTTATTCTGGA
*
22476918 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
22476933 TTTCTTTATTC
1 TTTCTTTATTC
22476944 AGTTTTCTTG
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
14 2 0.06
15 31 0.89
16 2 0.06
ACGTcount: A:0.11, C:0.16, G:0.12, T:0.61
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:22476922 original size:30 final size:30
Alignment explanation
Indices: 22476886--22476943 Score: 91
Period size: 30 Copynumber: 1.9 Consensus size: 30
22476876 TCGTATCTTA
*
22476886 GGTTTCTTTAT-TCTGGATTTCTTTATTCTG
1 GGTTTCTCTATCT-TGGATTTCTTTATTCTG
22476916 GGTTTCTCTATCTTGGATTTCTTTATTC
1 GGTTTCTCTATCTTGGATTTCTTTATTC
22476944 AGTTTTCTTG
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
30 25 0.96
31 1 0.04
ACGTcount: A:0.10, C:0.16, G:0.16, T:0.59
Consensus pattern (30 bp):
GGTTTCTCTATCTTGGATTTCTTTATTCTG
Found at i:22479443 original size:47 final size:46
Alignment explanation
Indices: 22479374--22479498 Score: 141
Period size: 46 Copynumber: 2.7 Consensus size: 46
22479364 ATATTTGAGT
* * *
22479374 TCCGAACTCATTGAGTTGAGTCCGAGTTCA-TGA-GATG-TAACTAGGC
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTGAGGATGCGAAC---GC
*
22479420 ATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
1 -TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTGA-GGATGCGAACGC
22479468 -CCGAGCTCGTTGAGTTGAGTCCGAGTTCACT
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACT
22479499 TATGGGCGGG
Statistics
Matches: 70, Mismatches: 4, Indels: 9
0.84 0.05 0.11
Matches are distributed among these distances:
46 31 0.44
47 28 0.40
48 4 0.06
50 4 0.06
51 3 0.04
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (46 bp):
TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTGAGGATGCGAACGC
Found at i:22489315 original size:23 final size:21
Alignment explanation
Indices: 22489263--22489323 Score: 104
Period size: 21 Copynumber: 2.8 Consensus size: 21
22489253 TTATTTTTTT
22489263 ATTTTAAAATATATTTTTAGA
1 ATTTTAAAATATATTTTTAGA
22489284 ATTTTAAAATATATTTTTAGA
1 ATTTTAAAATATATTTTTAGA
22489305 ATTTCTAAAAATATATTTT
1 ATTT-T-AAAATATATTTT
22489324 AAAATAAAAA
Statistics
Matches: 38, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
21 25 0.66
22 1 0.03
23 12 0.32
ACGTcount: A:0.43, C:0.02, G:0.03, T:0.52
Consensus pattern (21 bp):
ATTTTAAAATATATTTTTAGA
Found at i:22490280 original size:208 final size:206
Alignment explanation
Indices: 22489874--22490281 Score: 649
Period size: 208 Copynumber: 2.0 Consensus size: 206
22489864 CTACAGCCTC
* **
22489874 AGTTCCCCCACTCACCTATTCACTCATTCACAAAGAAAACACCCCCGTCACACTCAGAGACAGCG
1 AGTTCCCCCACTCACCCATTCACTCATTCACAAAGAAAACACCCCCACCACACTCAGAGACAGCG
22489939 TCGCTACTCATTTGTCTCCAACATTCAACCTTCAGTCTCATCGCACATTGTAATAACAACTAGTT
66 TCGCTACTCATTTGTCTCCAACATTCAACCTTCAG-CTCATCGCACATTGTAATAACAACTAGTT
* * *
22490004 AGTAGTTACTAAAAAAAACTACTTATTATGACAATGCATACAATAATTTTCCCACCTAACACACT
130 AATAGTTACTAAAAAAAACTACTTATTATGACAACGCATACAATAATTTTACCACCTAACACACT
22490069 TTCACCAACCTT
195 TTCACCAACCTT
* * *
22490081 AGTTCCCCTACTCACCCATTCACTCATTCACAAAGACAACACCCCCACCACGCTCAGAGACCTCC
1 AGTTCCCCCACTCACCCATTCACTCATTCACAAAGAAAACACCCCCACCACACTCAGAGA----C
*
22490146 AGCGTCGCTACTCATTTGTCTCCAACATTCAGCCTTCAG-TCATCGCACATTGTAATAACAACTA
62 AGCGTCGCTACTCATTTGTCTCCAACATTCAACCTTCAGCTCATCGCACATTGTAATAACAACTA
* *
22490210 GTTAATAGTTACT-AAAAAAACTACTTATTATGATAACGCATACAATAATTTTATCACCTAACAC
127 GTTAATAGTTACTAAAAAAAACTACTTATTATGACAACGCATACAATAATTTTACCACCTAACAC
22490274 ACTTTCAC
192 ACTTTCAC
22490282 TGCCAATAAT
Statistics
Matches: 185, Mismatches: 12, Indels: 7
0.91 0.06 0.03
Matches are distributed among these distances:
207 54 0.29
208 55 0.30
209 37 0.20
211 39 0.21
ACGTcount: A:0.34, C:0.31, G:0.08, T:0.27
Consensus pattern (206 bp):
AGTTCCCCCACTCACCCATTCACTCATTCACAAAGAAAACACCCCCACCACACTCAGAGACAGCG
TCGCTACTCATTTGTCTCCAACATTCAACCTTCAGCTCATCGCACATTGTAATAACAACTAGTTA
ATAGTTACTAAAAAAAACTACTTATTATGACAACGCATACAATAATTTTACCACCTAACACACTT
TCACCAACCTT
Found at i:22491215 original size:211 final size:208
Alignment explanation
Indices: 22490739--22491369 Score: 967
Period size: 211 Copynumber: 3.0 Consensus size: 208
22490729 GCAAATCCTG
* * * * *
22490739 CAACCTCAGTTCCCCCACTCACCCATTCACTCATTCACAAAGATAACAACCCCACCAAGCTTAGA
1 CAACCTCAGTT-CCCCACTAACCCATTCACTCATTCACAAAGACAACACCCCCACCACGCTCAGA
** * *
22490804 GACCTCTAGCGTCGCTGTTCATTTGTCTCCAACAATCAGCCTTTAATCTCATCGCACATTGTAAT
65 GACCTCTAGCGTCGCTACTCATTTGTCTCCAACATTCAGCCTTCAATCTCATCGCACATTGTAAT
*
22490869 AACAACTAGTTAGTAGTTACTATAAAAACTACATATTATGATAATGCATACAATAATTTTACCAC
130 AACAACTAGTTAGTAGTTACTAAAAAAACTAC-TATTATGATAATGCATACAATAATTTTACCAC
*
22490934 CCGACACACTTTCAC
194 CTGACACACTTTCAC
* * * * * *
22490949 CAACATCAGTTTTCCCACTCAA-CAATTCACTCATTCATAAAGACAACACCCCCACCACGATCAA
1 CAACCTCAG-TTCCCCACT-AACCCATTCACTCATTCACAAAGACAACACCCCCACCACGCTCAG
22491013 AGACCTCTAGCGTCGCTACTCATTTGTCTCCAACATTCAGCCTTCAATCTCATCGCACATTGTAA
64 AGACCTCTAGCGTCGCTACTCATTTGTCTCCAACATTCAGCCTTCAATCTCATCGCACATTGTAA
*
22491078 TAACAACTAGTTAGCAGTTACTAAGAAAAACTACTCATTATGATAATGCATACAATAATTTTACC
129 TAACAACTAGTTAGTAGTTACTAA-AAAAACTACT-ATTATGATAATGCATACAATAATTTTACC
22491143 ACCTGACACACTTTCAC
192 ACCTGACACACTTTCAC
22491160 CAACCTCAGTTCCCCTACTAACCCATTCACTCATTCACAAAGACAACACCCCCACCACGCTCAGA
1 CAACCTCAGTTCCCC-ACTAACCCATTCACTCATTCACAAAGACAACACCCCCACCACGCTCAGA
* * *
22491225 GACCTCTAACGTCGCTACTCATTTGTCTCCAACATTCAGCCTTCAGTCTCATCGTACATTGTAAT
65 GACCTCTAGCGTCGCTACTCATTTGTCTCCAACATTCAGCCTTCAATCTCATCGCACATTGTAAT
* *
22491290 AACAACTAGTTAGTAGTTACTAAAATAACTACTTATTATGATAATTCATACAATAATTTTACCAC
130 AACAACTAGTTAGTAGTTACTAAAAAAACTAC-TATTATGATAATGCATACAATAATTTTACCAC
*
22491355 CTAACACACTTTCAC
194 CTGACACACTTTCAC
22491370 TGCCAACAAT
Statistics
Matches: 383, Mismatches: 31, Indels: 14
0.89 0.07 0.03
Matches are distributed among these distances:
210 191 0.50
211 192 0.50
ACGTcount: A:0.34, C:0.30, G:0.08, T:0.28
Consensus pattern (208 bp):
CAACCTCAGTTCCCCACTAACCCATTCACTCATTCACAAAGACAACACCCCCACCACGCTCAGAG
ACCTCTAGCGTCGCTACTCATTTGTCTCCAACATTCAGCCTTCAATCTCATCGCACATTGTAATA
ACAACTAGTTAGTAGTTACTAAAAAAACTACTATTATGATAATGCATACAATAATTTTACCACCT
GACACACTTTCAC
Found at i:22491620 original size:19 final size:21
Alignment explanation
Indices: 22491584--22491630 Score: 64
Period size: 19 Copynumber: 2.3 Consensus size: 21
22491574 CAGTCTTGAT
22491584 ATCCCT-TTTTCCCTTTCC-A
1 ATCCCTATTTTCCCTTTCCTA
22491603 ATCCCTATTTTCCC-TTCCTTA
1 ATCCCTATTTTCCCTTTCC-TA
22491624 ATCCCTA
1 ATCCCTA
22491631 ATCCTTAAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
19 10 0.40
20 7 0.28
21 8 0.32
ACGTcount: A:0.15, C:0.40, G:0.00, T:0.45
Consensus pattern (21 bp):
ATCCCTATTTTCCCTTTCCTA
Found at i:22492304 original size:211 final size:209
Alignment explanation
Indices: 22491827--22492454 Score: 931
Period size: 211 Copynumber: 3.0 Consensus size: 209
22491817 CAAATTCTGC
* * * * * *
22491827 AACCTCAGTTCCCCCACTCACCTATTCACTAATTCATAAAGAGAACA-CCCTACCACGCTTAGAG
1 AACCTCAGTTCCCCTACTCACCCATTCACTCATTCACAAAGACAACACCCCCACCACGCTTAGAG
* * *
22491891 AACTCCAGCGTCGCTACTCATTTCTCTCCAACATTCAGCTTTCAGTCTCATCGCACATTGTAATA
66 -ACTCCAGCATCGCTACTCATTTCTCTCCAATATTCAGCCTTCAGTCTCATCGCACATTGTAATA
22491956 ACAACTAGTTAGTAGTTACTAAAATAC-CTACTTATTATGATAAAT-CATACAATAATTTTACCA
130 ACAACTAGTTAGTAGTTACTAAAA-ACACTACTTATTATGAT-AATGCATACAATAATTTTACCA
*
22492019 CCTGACACACTTTCACC
193 CCTGACACACTTTCACA
* * * *
22492036 AGCCTCAGTTCCCTTACTTACCCATTCACTCATTCACAAAGACAACACCCTCACCACGCTTAGAG
1 AACCTCAGTTCCCCTACTCACCCATTCACTCATTCACAAAGACAACACCCCCACCACGCTTAGAG
* *
22492101 ACTTCCAGCATCGCTACTCATTTCTCTCCAATATTTATCCTTCAGTCTCATCGCACATTGTAATA
66 AC-TCCAGCATCGCTACTCATTTCTCTCCAATATTCAGCCTTCAGTCTCATCGCACATTGTAATA
*
22492166 ACAATTAGTTAGTAGTTACTAAAAACAACTACTTATTATGATAATGCATACAATAATTTTACCAC
130 ACAACTAGTTAGTAGTTACTAAAAAC-ACTACTTATTATGATAATGCATACAATAATTTTACCAC
*
22492231 CTGACACACTGTCACA
194 CTGACACACTTTCACA
* * *
22492247 AACCTAAGTTCCCCTACTCACCCATTCACTCATTCACAAAGACTACACCCCCACCACGCTGAGAG
1 AACCTCAGTTCCCCTACTCACCCATTCACTCATTCACAAAGACAACACCCCCACCACGCTTAGAG
** * * *
22492312 ACCTCCAGCATCATTACTCATTTGTCTACAATATTCAGCCTTCAGTCTCATCGTACATTGTAATA
66 A-CTCCAGCATCGCTACTCATTTCTCTCCAATATTCAGCCTTCAGTCTCATCGCACATTGTAATA
*
22492377 ACAACTAGTTAGTAGTTACT-AAAAGACTACTTATTATGATAATGCATACAATAATTTTACCACC
130 ACAACTAGTTAGTAGTTACTAAAAACACTACTTATTATGATAATGCATACAATAATTTTACCACC
22492441 TGACACACTTTCAC
195 TGACACACTTTCAC
22492455 TGCTAATAAT
Statistics
Matches: 378, Mismatches: 35, Indels: 12
0.89 0.08 0.03
Matches are distributed among these distances:
209 95 0.25
210 102 0.27
211 180 0.48
212 1 0.00
ACGTcount: A:0.32, C:0.29, G:0.09, T:0.29
Consensus pattern (209 bp):
AACCTCAGTTCCCCTACTCACCCATTCACTCATTCACAAAGACAACACCCCCACCACGCTTAGAG
ACTCCAGCATCGCTACTCATTTCTCTCCAATATTCAGCCTTCAGTCTCATCGCACATTGTAATAA
CAACTAGTTAGTAGTTACTAAAAACACTACTTATTATGATAATGCATACAATAATTTTACCACCT
GACACACTTTCACA
Found at i:22493272 original size:210 final size:209
Alignment explanation
Indices: 22492910--22493552 Score: 867
Period size: 210 Copynumber: 3.0 Consensus size: 209
22492900 ACAAATTCTG
* * *
22492910 CAACCTCAGTTCCCCCACTCACCCATTCACTATTTCACAAAGACAACACCCCTACCATGCTCAAA
1 CAACCTCAGTTCCCCCACTCAACCATTCACTATTT-ACAAAGACAACACCCCCACCATGCTCAGA
* * * *
22492975 GACCTCCAGCGTCGCTGCTCAATTGTCTCCAACATTCAGCCTTTAGTCTTATCGCACATTGTAAT
65 GACCTCCAGCGTCGCTACTCATTTGTCTCCAACATTCAGCCTTCAGTCTCATCGCACATTGTAAT
*
22493040 AACAACTAGTTAGTAGTTACTAAAAAAACTACTTATTATGATAATACATACAATAATTTTACCAC
130 AACAACTAGTTAGTAGTTACTAAAAAAACTACTTATTATGATAATGCATACAATAATTTTACCAC
22493105 CTGACACACTTTCAC
195 CTGACACACTTTCAC
* * *
22493120 CAACCTCAGTTCCCCCACTCAACCATTAACTAATTTATAAACACAACACCCCCACCATGCTCAGA
1 CAACCTCAGTTCCCCCACTCAACCATTCACT-ATTTACAAAGACAACACCCCCACCATGCTCAGA
* * *
22493185 GACCTCTAGCGTCGCTACTCATTTGTCTCCAACATTCAGCCTTCACTCCCATCGCACATTGTAAT
65 GACCTCCAGCGTCGCTACTCATTTGTCTCCAACATTCAGCCTTCAGTCTCATCGCACATTGTAAT
* *
22493250 AACAACTAGTTAGTAGTTACTAAAAATAATTACTTATTATCATAATGCATACAATAATTTTACCA
130 AACAACTAGTTAGTAGTTACTAAAAA-AACTACTTATTATGATAATGCATACAATAATTTTACCA
22493315 CCTGACACACTTTCGAAAAC
194 CCTGACACACTTTC----AC
* *
22493335 CTAAGTTCCCCTACTAAGTTCCCCTACTC-ACCTATTCACTCATTCACAAAGACAACACCCCCAC
1 C-AA-----CCT-C--AGTTCCCCCACTCAACC-ATTCACT-ATTTACAAAGACAACACCCCCAC
* * * * * * * *
22493399 CACGCTGAGAGACCTCCAGCATTGTTACTCATTTGTCTACAACATTCATCCTTCAGTCTCATCGT
55 CATGCTCAGAGACCTCCAGCGTCGCTACTCATTTGTCTCCAACATTCAGCCTTCAGTCTCATCGC
*
22493464 ACATTGTAATAACAACTAGTTAGTAGTTACT-AAAAAACTACTAATTATGATAATGCATACAATA
120 ACATTGTAATAACAACTAGTTAGTAGTTACTAAAAAAACTACTTATTATGATAATGCATACAATA
22493528 ATTTTACCACCTGACACACTTTCAC
185 ATTTTACCACCTGACACACTTTCAC
22493553 TACTAATAAT
Statistics
Matches: 381, Mismatches: 36, Indels: 24
0.86 0.08 0.05
Matches are distributed among these distances:
210 138 0.36
211 53 0.14
215 3 0.01
216 2 0.01
218 2 0.01
221 3 0.01
222 50 0.13
223 7 0.02
224 123 0.32
ACGTcount: A:0.33, C:0.30, G:0.08, T:0.28
Consensus pattern (209 bp):
CAACCTCAGTTCCCCCACTCAACCATTCACTATTTACAAAGACAACACCCCCACCATGCTCAGAG
ACCTCCAGCGTCGCTACTCATTTGTCTCCAACATTCAGCCTTCAGTCTCATCGCACATTGTAATA
ACAACTAGTTAGTAGTTACTAAAAAAACTACTTATTATGATAATGCATACAATAATTTTACCACC
TGACACACTTTCAC
Found at i:22493353 original size:13 final size:13
Alignment explanation
Indices: 22493335--22493362 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
22493325 TTTCGAAAAC
22493335 CTAAGTTCCCCTA
1 CTAAGTTCCCCTA
22493348 CTAAGTTCCCCTA
1 CTAAGTTCCCCTA
22493361 CT
1 CT
22493363 CACCTATTCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.21, C:0.39, G:0.07, T:0.32
Consensus pattern (13 bp):
CTAAGTTCCCCTA
Found at i:22494379 original size:209 final size:210
Alignment explanation
Indices: 22494033--22494429 Score: 654
Period size: 209 Copynumber: 1.9 Consensus size: 210
22494023 CCCCTCTATC
*
22494033 CCATTCACTAATTCACAAAGACAACACCCCCACCACGCTCAGAGACCTCCAGCATCGCTACTCAT
1 CCATTCACTAATTCACAAACACAACACCCCCACCACGCTCAGAGACCTCCAGCATCGCTACTCAT
* * ** *
22494098 TTGTCTCCAACATTCGGCCTTTAGTTTCATCGTACATTGTAATAACAACTAGTTAGTAGTTACTA
66 TTGTCTCCAACATTCAGCCTTCAGTCCCATCGCACATTGTAATAACAACTAGTTAGTAGTTACTA
22494163 AAAAAACTACTTACTATG-TAATAAATACAATAATTTTACCACCTGACACACTTTCACCAACCTC
131 AAAAAACTACTTACTATGATAATAAATACAATAATTTTACCACCTGACACACTTTCACCAACCTC
22494227 TGTTCCCCTACTCAA
196 TGTTCCCCTACTCAA
* *
22494242 CCATTCACTCATTCACAAACACAACACCCCCACCACGCTCAGAGACCTCTAGTC-TCGCTACTCA
1 CCATTCACTAATTCACAAACACAACACCCCCACCACGCTCAGAGACCTCCAG-CATCGCTACTCA
*
22494306 TTTGTCTCCAACATTTAGCCTTCAGTCCCATCGCACATTGTAATAACAACTAGTTAGTAGTTACT
65 TTTGTCTCCAACATTCAGCCTTCAGTCCCATCGCACATTGTAATAACAACTAGTTAGTAGTTACT
* * **
22494371 AAAAAAACTACTTATTTTGATAATGCATACAATAATTTTACCACCTGACACACTTTCAC
130 AAAAAAACTACTTACTATGATAATAAATACAATAATTTTACCACCTGACACACTTTCAC
22494430 TACCAATTCT
Statistics
Matches: 173, Mismatches: 13, Indels: 3
0.92 0.07 0.02
Matches are distributed among these distances:
209 135 0.78
210 38 0.22
ACGTcount: A:0.33, C:0.30, G:0.09, T:0.28
Consensus pattern (210 bp):
CCATTCACTAATTCACAAACACAACACCCCCACCACGCTCAGAGACCTCCAGCATCGCTACTCAT
TTGTCTCCAACATTCAGCCTTCAGTCCCATCGCACATTGTAATAACAACTAGTTAGTAGTTACTA
AAAAAACTACTTACTATGATAATAAATACAATAATTTTACCACCTGACACACTTTCACCAACCTC
TGTTCCCCTACTCAA
Found at i:22495067 original size:874 final size:876
Alignment explanation
Indices: 22493120--22495300 Score: 2952
Period size: 874 Copynumber: 2.5 Consensus size: 876
22493110 ACACTTTCAC
* * * * *
22493120 CAACCTCAGTTCCCCCACTCAACCATTAACTAATTTATAAACACAACACCCCCACCATGCTCAGA
1 CAACCTCAGTTCCCCCA-TCACCCATTCACTAATTCACAAAGACAACACCCCCACCATGCTCAGA
* * * **
22493185 GACCTCTAGCGTCGCTACTCATTTGTCTCCAACATTC-AGCCTTCACTCCCATCGCACATTGTAA
65 GACCTCCAGCATCGCTACTCATTTGTCTCCAACATTCGA-CCTTCAGTCTTATCGCACATTGTAA
* * *
22493249 TAACAACTAGTTAGTAGTTACTAAAAATAATTACTTATTATCATAATGCATACAATAATTTTACC
129 TAACAACTAGTTAGTAGTTACTAAAAA-AACTACTTATTATGATAATACATACAATAATTTTACC
22493314 ACCTGACACACTTTCGAAAACCTAAGTTCCCCTACTAAGTTCCCCTACTC-ACCTATTCACTCAT
193 ACCTGACACACTTTC----ACC-AA-----CCT-CT--GTTCCCCTACTCAACC-ATTCACTCAT
* * * * *
22493378 TCACAAAGACAACACCCCCACCACGCTGAGAGACCTCCAGCATTGTTACTCATTTGTCTACAACA
244 TCACAAAGACAACACCCCCACCACGCTCAGAGACCTCTAGCATCGCTACTCATTTGTCTCCAACA
* *
22493443 TTCATCCTTCAGTCTCATCGTACATTGTAATAACAACTAGTTAGTAGTTACT-AAAAAACTACTA
309 TTCAACCTTCAGTCTCATCGCACATTGTAATAACAACTAGTTAGTAGTTACTAAAAAAACTACTA
*
22493507 ATTATGATAATGCATACAATAATTTTACCACCTGACACACTTTCACTACTAATAATCTTTACTGT
374 ATTATGATAATGCATACAATAATTTTACCACCTGACACACTTTCACTACCAAT-ATCTTTACTGT
* *
22493572 GGAATATAAAATGATATCATTTTTCTTGGTTTTATAGAATTTTTTTTCATAGAGAGTTATTATAT
438 GGAATATAAAATGATATCATTTTTCTTAGTTTTATAGAATTTTTTTTCATAGAGAATTATTATAT
* * * * *
22493637 GTATTGTACTACCAGTCTGATTTAAAAATGGGTCAGGCTTCGAGCAAGGAATTTTCAACCCAAGT
503 GTAATGCACTACCAGTCTCATTTAAAAATGGGTCAAGCTTCGAGCAAGGAATTTTCAACCCAAGC
* * * *
22493702 CCAGCCCGATTTTATTAACCTAAAAGTTTTATCCTTACTCCCATTTCCCAGCAGACCCAATCTTG
568 CCAGACCAATTTTATTAACCTAAAAGTTTTACCCTTACTCCCACTTCCCAGCAGACCCAATCTTG
* ** * *
22493767 ATATCCCCCTTTCTGTTTCCAATCCCTATTTTCCCTTCCTTAATCCCTAATCCTTAAATTTTTCC
633 ATATACCCCTTTCCCTTTCCAATCCCCATTTTCCCTTCCTCAATCCCTAATCCTTAAATTTTTCC
* * *
22493832 TTATTTATTGCTTCTTTGGTGTTGCCACCAATGATTCTTTTCTACCTTTAGCTGCCTTTCATTTG
698 TTATTTACTGCTTCTTTGGTGTTGCCACCAATGATTCTTCTCTACCTTTAGCTGCCTTTCATTTC
* * * * *
22493897 TTTTGTTGTCATTGCTGCCATTGTTGCTTTTTTACCTTCTGTTTAGTTTCTGCTTCTTCACCAGT
763 TTTCGTTGTCATTACTGCCATTGTTACTTTTTTACCTTCTGTTCAGTTTCTGATTCTTCACCAGT
* ** * * *
22493962 CATTAGTCGTCGTTGCTACTTATCGTTTCTCTACCTTCTGCAAATTCTG
828 CATTAGTCGCCACTGCTACTTATCGCTTCTCTACCGTCTGCAAATTCTA
* *
22494011 CAAACTCAGTTCCCCC-TCTATCCCATTCACTAATTCACAAAGACAACACCCCCACCACGCTCAG
1 CAACCTCAGTTCCCCCATC-A-CCCATTCACTAATTCACAAAGACAACACCCCCACCATGCTCAG
* * *
22494075 AGACCTCCAGCATCGCTACTCATTTGTCTCCAACATTCGGCCTTTAGT-TTCATCGTACATTGTA
64 AGACCTCCAGCATCGCTACTCATTTGTCTCCAACATTCGACCTTCAGTCTT-ATCGCACATTGTA
* *
22494139 ATAACAACTAGTTAGTAGTTACTAAAAAAACTACTTACTATG-TAATAAATACAATAATTTTACC
128 ATAACAACTAGTTAGTAGTTACTAAAAAAACTACTTATTATGATAATACATACAATAATTTTACC
*
22494203 ACCTGACACACTTTCACCAACCTCTGTTCCCCTACTCAACCATTCACTCATTCACAAACACAACA
193 ACCTGACACACTTTCACCAACCTCTGTTCCCCTACTCAACCATTCACTCATTCACAAAGACAACA
* *
22494268 CCCCCACCACGCTCAGAGACCTCTAGTC-TCGCTACTCATTTGTCTCCAACATTTAGCCTTCAGT
258 CCCCCACCACGCTCAGAGACCTCTAG-CATCGCTACTCATTTGTCTCCAACATTCAACCTTCAGT
* * *
22494332 CCCATCGCACATTGTAATAACAACTAGTTAGTAGTTACTAAAAAAACTACTTATTTTGATAATGC
322 CTCATCGCACATTGTAATAACAACTAGTTAGTAGTTACTAAAAAAACTACTAATTATGATAATGC
22494397 ATACAATAATTTTACCACCTGACACACTTTCACTACCAAT-TCTTTACTGTGGAATATAAAATGA
387 ATACAATAATTTTACCACCTGACACACTTTCACTACCAATATCTTTACTGTGGAATATAAAATGA
* *
22494461 TCTCATTTTTCTTAGTTTTATAGAA-TTTTTTTCATAGAGAATTATTGTATGTAATGCACTACCA
452 TATCATTTTTCTTAGTTTTATAGAATTTTTTTTCATAGAGAATTATTATATGTAATGCACTACCA
* * * *
22494525 GTC-CATTTGAAAAATGGGTTAAGCTTCGAGCAAGGATTTTTCAACCTAGGCCCAGACCAATTTT
517 GTCTCATTT-AAAAATGGGTCAAGCTTCGAGCAAGGAATTTTCAACCCAAGCCCAGACCAATTTT
** * * * *
22494589 ATTAACCTAAAAGTTTTACCCTTGTTCCCACTTCCTAGTAGACCCAGTCTTGATATACCTCTTTC
581 ATTAACCTAAAAGTTTTACCCTTACTCCCACTTCCCAGCAGACCCAATCTTGATATACCCCTTTC
22494654 CCTTTCCAATCCCCATTTTCCCTTCCTCAATCCCTAATCCTTAAATTTTTCCTTATTTACTGCTT
646 CCTTTCCAATCCCCATTTTCCCTTCCTCAATCCCTAATCCTTAAATTTTTCCTTATTTACTGCTT
* * * * *
22494719 CTTTGGTGTTGCCACCATTG-TTGCTTCTCT-GCTTTCGCTGCTTTTCCTTTCTTTCGTTGTCAT
711 CTTTGGTGTTGCCACCAATGATT-CTTCTCTACCTTTAGCTGCCTTTCATTTCTTTCGTTGTCAT
* ** *
22494782 TACTGTCATTGTTACTTTTTTACCTTCTGTTCAGTTTCTGATTCTTTGCCAGTCGTTAGTCGCCA
775 TACTGCCATTGTTACTTTTTTACCTTCTGTTCAGTTTCTGATTCTTCACCAGTCATTAGTCGCCA
*
22494847 CTGCTATTTATCGCTTCTCTACCGTCTGCAAATTCTA
840 CTGCTACTTATCGCTTCTCTACCGTCTGCAAATTCTA
* * * *
22494884 CAACCACAGTTCCCCCAGTCACCCATTCACTCATTCACAAAGACAACAACCCTACCATGCTCAGA
1 CAACCTCAGTTCCCCCA-TCACCCATTCACTAATTCACAAAGACAACACCCCCACCATGCTCAGA
* ** * * *
22494949 GACCACCAGCATCGCTGTTCATTTGTCTCCAACAATCGAACTTCAGTCTTATCCCACATTGTAAT
65 GACCTCCAGCATCGCTACTCATTTGTCTCCAACATTCGACCTTCAGTCTTATCGCACATTGTAAT
* * * * * *
22495014 AACAACTAGCTAGTTGTTACTATAAAAACTACTTATTATGATAATTCATACAATACTTTTATCAC
130 AACAACTAGTTAGTAGTTACTAAAAAAACTACTTATTATGATAATACATACAATAATTTTACCAC
* * * * * *
22495079 TTGACACGCTTTCACCGACCAT-AGTTTCCCC-ACTCAACCATTAACTCATTCACAAAGATAACA
195 CTGACACACTTTCACCAACC-TCTG-TTCCCCTACTCAACCATTCACTCATTCACAAAGACAACA
* * * *
22495142 CCCCTACCACGATCAGAGACCTCTAGCGTCGCTACTTATTTGTCTCCAACATTCAACGC-TCAGT
258 CCCCCACCACGCTCAGAGACCTCTAGCATCGCTACTCATTTGTCTCCAACATTCAAC-CTTCAGT
* * * *
22495206 CTTATCGCACATTGTAATAATAGCTAGTTAGTAGTTACTAAGAAAAACTACTCATTATGATAATG
322 CTCATCGCACATTGTAATAACAACTAGTTAGTAGTTACTAA-AAAAACTACTAATTATGATAATG
22495271 CATACAATAATTTTACCACCTGACACACTT
386 CATACAATAATTTTACCACCTGACACACTT
22495301 ACACCAACCT
Statistics
Matches: 1146, Mismatches: 126, Indels: 52
0.87 0.10 0.04
Matches are distributed among these distances:
873 264 0.23
874 388 0.34
875 108 0.09
876 127 0.11
877 66 0.06
878 2 0.00
879 3 0.00
884 2 0.00
885 3 0.00
889 37 0.03
890 12 0.01
891 134 0.12
ACGTcount: A:0.28, C:0.27, G:0.10, T:0.35
Consensus pattern (876 bp):
CAACCTCAGTTCCCCCATCACCCATTCACTAATTCACAAAGACAACACCCCCACCATGCTCAGAG
ACCTCCAGCATCGCTACTCATTTGTCTCCAACATTCGACCTTCAGTCTTATCGCACATTGTAATA
ACAACTAGTTAGTAGTTACTAAAAAAACTACTTATTATGATAATACATACAATAATTTTACCACC
TGACACACTTTCACCAACCTCTGTTCCCCTACTCAACCATTCACTCATTCACAAAGACAACACCC
CCACCACGCTCAGAGACCTCTAGCATCGCTACTCATTTGTCTCCAACATTCAACCTTCAGTCTCA
TCGCACATTGTAATAACAACTAGTTAGTAGTTACTAAAAAAACTACTAATTATGATAATGCATAC
AATAATTTTACCACCTGACACACTTTCACTACCAATATCTTTACTGTGGAATATAAAATGATATC
ATTTTTCTTAGTTTTATAGAATTTTTTTTCATAGAGAATTATTATATGTAATGCACTACCAGTCT
CATTTAAAAATGGGTCAAGCTTCGAGCAAGGAATTTTCAACCCAAGCCCAGACCAATTTTATTAA
CCTAAAAGTTTTACCCTTACTCCCACTTCCCAGCAGACCCAATCTTGATATACCCCTTTCCCTTT
CCAATCCCCATTTTCCCTTCCTCAATCCCTAATCCTTAAATTTTTCCTTATTTACTGCTTCTTTG
GTGTTGCCACCAATGATTCTTCTCTACCTTTAGCTGCCTTTCATTTCTTTCGTTGTCATTACTGC
CATTGTTACTTTTTTACCTTCTGTTCAGTTTCTGATTCTTCACCAGTCATTAGTCGCCACTGCTA
CTTATCGCTTCTCTACCGTCTGCAAATTCTA
Found at i:22495372 original size:211 final size:209
Alignment explanation
Indices: 22494884--22495519 Score: 774
Period size: 211 Copynumber: 3.0 Consensus size: 209
22494874 GCAAATTCTA
* * * *
22494884 CAACCACAGTTCCCCCAGTCACCCATTCACTCATTCACAAAGACAACAACCCTACCATGCTCAGA
1 CAACCTCAGTT-CCCCACTCACCCATTCACTCATTCACAAAGACAACACCCCTACCACGCTCAGA
* * * * *
22494949 GACCACCAGCATCGCT-GTTCATTTGTCTCCAACAATCGAACTTCAGTCTTATCCCACATTGTAA
65 GACCTCCAGCATCGCTACTT-ATTTGTCTCCAACATTC-AACCTCAGTCTTATCGCACATTGTAA
* * * * * *
22495013 TAACAACTAGCTAGTTGTTACT-ATAAAAACTACTTATTATGATAATTCATACAATACTTTTATC
128 TAACAACTAGTTAGTAGTTACTAAAAAAAACTACTTATTATGATAATGCATACAATAATTTTACC
* * *
22495077 ACTTGACACGCTTTCAC
193 ACCTGACACACTTACAC
* * * * *
22495094 CGACCAT-AGTTTCCCCACTCAACCATTAACTCATTCACAAAGATAACACCCCTACCACGATCAG
1 CAACC-TCAG-TTCCCCACTCACCCATTCACTCATTCACAAAGACAACACCCCTACCACGCTCAG
* *
22495158 AGACCTCTAGCGTCGCTACTTATTTGTCTCCAACATTCAACGCTCAGTCTTATCGCACATTGTAA
64 AGACCTCCAGCATCGCTACTTATTTGTCTCCAACATTCAAC-CTCAGTCTTATCGCACATTGTAA
* * * *
22495223 TAATAGCTAGTTAGTAGTTACTAAGAAAAACTACTCATTATGATAATGCATACAATAATTTTACC
128 TAACAACTAGTTAGTAGTTACTAAAAAAAACTACTTATTATGATAATGCATACAATAATTTTACC
22495288 ACCTGACACACTTACAC
193 ACCTGACACACTTACAC
* *
22495305 CAACCTCAGTTCCCCAACTCACCCATTCACCCATTCACAAAGACAACACCCCCACCACGCTCAGA
1 CAACCTCAGTTCCCC-ACTCACCCATTCACTCATTCACAAAGACAACACCCCTACCACGCTCAGA
* * * * *
22495370 GACCTCCAGCATCGCTACTCATTTTTCTCCAGCATTCAGCCTTCAGTCTTATCGCACATTCTAAT
65 GACCTCCAGCATCGCTACTTATTTGTCTCCAACATTCAACC-TCAGTCTTATCGCACATTGTAAT
22495435 AACAACTAGTTAGTAGTTACTAAAATAACTAAAATAACTACTTATTATGATAATGCATACAATAA
129 AACAACTAGTTAGTAGTTAC-----TAA--AAAA-AACTACTTATTATGATAATGCATACAATAA
*
22495500 TTTTACCACCTAACACACTT
186 TTTTACCACCTGACACACTT
22495520 TCAATGCCAA
Statistics
Matches: 363, Mismatches: 47, Indels: 23
0.84 0.11 0.05
Matches are distributed among these distances:
209 3 0.01
210 128 0.35
211 178 0.49
216 3 0.01
218 3 0.01
219 48 0.13
ACGTcount: A:0.33, C:0.30, G:0.09, T:0.28
Consensus pattern (209 bp):
CAACCTCAGTTCCCCACTCACCCATTCACTCATTCACAAAGACAACACCCCTACCACGCTCAGAG
ACCTCCAGCATCGCTACTTATTTGTCTCCAACATTCAACCTCAGTCTTATCGCACATTGTAATAA
CAACTAGTTAGTAGTTACTAAAAAAAACTACTTATTATGATAATGCATACAATAATTTTACCACC
TGACACACTTACAC
Found at i:22496973 original size:876 final size:872
Alignment explanation
Indices: 22495104--22498781 Score: 4540
Period size: 877 Copynumber: 4.2 Consensus size: 872
22495094 CGACCATAGT
* * * * * *
22495104 TTCCCCACTCAACCATTAACTCATTCACAAAGATAACACCCCTACCACGATCAGAGACCTCTAGC
1 TTCCCCACTCAACCATTCACTCATTCACAAAGACAACACCCCCACCACGCTCAGAGACCTCCAAC
* * * * * *
22495169 GTCGCTACTTATTTGTCTCCAACATTCAACGC-TCAGTCTTATCGCACATTGTAATAATAGCTAG
66 GTCGCTACTCATTTGTCTCCAACATTCAGC-CTTCAATCTCATCGCACATTGTAATAACAACTAG
*
22495233 TTAGTAGTTACTAAGAA-AAACTACTCATTATGATAATGCATACAATAATTTTACCACCTGACAC
130 TTAGTAGTTACTAA-AACAAACTACTTATTATGATAATGCATACAATAATTTTACCACCTGACAC
* * *
22495297 ACTTACACCAACCTCAGTTCCCCAACTCACCCATTCACCCATTCACAAAGACAACACCCCCACCA
194 ACTTTCACCAACCTCAGTTCCCCTACTCACCCATTCACTCATTCACAAAGACAACACCCCCACCA
* *
22495362 CGCTCAGAGACCTCCAGCATCGCTACTCATTTTTCTCCAGCATTCAGCCTTCAGTCTTATCGCAC
259 CGCTCAGAGACCTCCAGCATCGCTACTCATTTGTCTCCAACATTCAGCCTTCAGTCTTATCGCAC
*
22495427 ATTCTAATAACAACTAGTTAGTAGTTACTAAAATAACTAAAATAACTACTTATTATGATAATGCA
324 ATTGTAATAACAACTAGTTAGTAG----T----T-ACTAAAA-AACTACTTATTATGATAATGCA
* *
22495492 TACAATAATTTTACCACCTAACACACTTTCAATGCCAATAATCTTTACTGTGGAATATAAAATAA
379 TACAATAATTTTACCACCTAACACACTTTCACTGCCAATAATCTTTACTGTGGAATATAAAATGA
* * *
22495557 TCTCATTTTTCTTGGTTTTATAGAATTTTTTTCATAGAGATTAATTGTATATATTACACTACAAG
444 TCTCATTTTTCTTGGTTTTATAGAATTTTTTTCATAGAGATTTATTGTATATATTGCACTACCAG
* * * * * * *
22495622 TCTGTTTTAAAAATGGTTCGGGCTTCGATCAAGGATTTTTCAACCTC-GACCTAGCTCAATTTTA
509 TCCGTTTTAAAAATGGGTCGGGCTTCGAGCAAGGATTTTTCAACC-CAGGCC-AACCCGATTTTA
* ** *
22495686 TTAACCTAGAAA-TCTTACCCTTGTTCCCACTTCCCAATAGACCCAGTGTTGATATTCCCCTTT-
572 TTAACCTA-AAAGTTTTACCCTTGTTCCCACTTCCCAGCAGACCCAGTCTTGATATTCCCCTTTC
* ** * * *
22495749 CCTTTCCAATCCCTATTCTCCCTTCCACAATCCTCAATTCTTAAAATTTTCCTTATTTACTGCTT
636 CCTTTCCAATCCCTATTTTCCCTTCCTTAATCCT-AATCCTTAAATTTTTCCTTATTTATTGCTT
* * * *
22495814 CATTGGTGTTGCCACCATTGTTTCTTCTCTTACTTTTGCTGCTTTTCGTTCGTTTCGTTGTCATT
700 CTTTGGTGTTGCCACCATTGTTGCTACTCTTCCTTTTGCTGCTTTTCGTT-GTTTCGTTGTCATT
* * * * * * ** *
22495879 GCCACCATTGTTGCTCTTTTACCTTCTACTTAGTTTC-AGTTTCTTCCCCT-GTTGTTAACAGTC
764 GCCGCCATTGTTGCTTTTTTACCTTCTACTTATTTTCTA-CTTCTT-CGCTAGTCGTT-AGTGCC
* *
22495942 GCTGCTACTTTTCACTTCTCTACCTTC-AGTAAATTATGCAACCTCAA
826 GCTGCTACTTTTCACTTCTCTACCTTCTA-CAAATTCTGCAACCTCAA
*
22495989 TTCCCTCACTCAACCATTCACTCATTCACAAAGACAACACCCCCACCACGCTCAGAGACCTCCAG
1 TTCCC-CACTCAACCATTCACTCATTCACAAAGACAACACCCCCACCACGCTCAGAGACCTCCAA
* *
22496054 CATCGCTACTCATTTGTCTCCAACATTCACCCTTCAATCTCATCGCACATTGTAATAACAACTAG
65 CGTCGCTACTCATTTGTCTCCAACATTCAGCCTTCAATCTCATCGCACATTGTAATAACAACTAG
* * *
22496119 TTAGTAGTTACTTAAAA-AAACTACTTATAATGATAATGCATACAATAGTTTTACCACCTGACAT
130 TTAGTAGTTAC-TAAAACAAACTACTTATTATGATAATGCATACAATAATTTTACCACCTGACAC
*
22496183 ACTTTCACCAGCCTCAGTTCCCCTACTCACCCATTCACTCATTCACAAAGACAACACCCCCACCA
194 ACTTTCACCAACCTCAGTTCCCCTACTCACCCATTCACTCATTCACAAAGACAACACCCCCACCA
** *
22496248 CGCTCAGAGACCTCCAGCGCCGCTACTCATTTGTCTCCAACATTCAGCCTTCAGTCTTATCGTAC
259 CGCTCAGAGACCTCCAGCATCGCTACTCATTTGTCTCCAACATTCAGCCTTCAGTCTTATCGCAC
*
22496313 ATTATAATAACAACTAGTTAGTAGTTACTAAAATAACTACTTATTATGATAATGCATACAATAAT
324 ATTGTAATAACAACTAGTTAGTAGTTACTAAAA-AACTACTTATTATGATAATGCATACAATAAT
* * *
22496378 TTTATCACCTAACACACTTTCATTCCCAATAATCTTTACTGTGGAATATAAAATGATCTCATTTT
388 TTTACCACCTAACACACTTTCACTGCCAATAATCTTTACTGTGGAATATAAAATGATCTCATTTT
* * * *
22496443 TCTAGGTTTGATAGAA-TTTTTTCATAGAGATTTATTCTATATATTGCACTACCAGTCCATTTTA
453 TCTTGGTTTTATAGAATTTTTTTCATAGAGATTTATTGTATATATTGCACTACCAGTCCGTTTTA
* **
22496507 AAAATAGGTCGACCTTCGAGCAAGGATTTTTCAACCCAGGCCAAGCCCGATTTTATTAACCTAAA
518 AAAATGGGTCGGGCTTCGAGCAAGGATTTTTCAACCCAGGCCAA-CCCGATTTTATTAACCTAAA
* * * * * *
22496572 AGGTTTACCCTTGTTCCTACTTGCCAGCAGGCCCAGTCTTAATATTCCCATTTCCCTTTCCAATC
582 AGTTTTACCCTTGTTCCCACTTCCCAGCAGACCCAGTCTTGATATTCCCCTTTCCCTTTCCAATC
* *
22496637 CCTATTTTCCCTTCCTTAATCCGTAATCCTTAAATTTTCCCTTATTTATTGCTTTTTTGGTGTTG
647 CCTATTTTCCCTTCCTTAATCC-TAATCCTTAAATTTTTCCTTATTTATTGCTTCTTTGGTGTTG
* * * * *
22496702 CCACCATTGTTGCTACTCTTCTTTTTACTGGTTTTCAGTT-TTTCGTTGTTATTACCGCCATTGT
711 CCACCATTGTTGCTACTCTTCCTTTTGCTGCTTTTC-GTTGTTTCGTTGTCATTGCCGCCATTGT
* * ** *
22496766 TACTTTTTTACCTTCTTCTTATTTTCTACTTCTTTTCTAGTCGTTAGTGGTCGCTGCTACTTTTC
775 TGCTTTTTTACCTTCTACTTATTTTCTACTTCTTCGCTAGTCGTTAGT-GCCGCTGCTACTTTTC
* *
22496831 ACTTCTCCATCTTCTACAAATTCTGCAACCTCAA
839 ACTTCTCTACCTTCTACAAATTCTGCAACCTCAA
* * *
22496865 TTCCTCCACT-AACCCATTCACTCATTCACAGAGACAACACCCCCACCACGTTCTGAGACCTCCA
1 TTCC-CCACTCAA-CCATTCACTCATTCACAAAGACAACACCCCCACCACGCTCAGAGACCTCCA
* ** * * * *
22496929 ATGTTACTGCTCATTTG-CATCCAACATTCAGCCTTCAGTCTCATCGCACATTGTAATAGCAATT
64 ACGTCGCTACTCATTTGTC-TCCAACATTCAGCCTTCAATCTCATCGCACATTGTAATAACAACT
** * *
22496993 AGTTCTTAGTTACTAAAACAGACTACTTATTATGATAATGAATACAATAAATTTT-CCACCTGAC
128 AGTTAGTAGTTACTAAAACAAACTACTTATTATGATAATGCATACAAT-AATTTTACCACCTGAC
* * *
22497057 ACACTTTCACCAACCTCAGCTCCCCTACTCACCCATTTACTAATTCACAAAGACAACACCCCCAC
192 ACACTTTCACCAACCTCAGTTCCCCTACTCACCCATTCACTCATTCACAAAGACAACACCCCCAC
* * *
22497122 CACGC-CGAGAGACCTCCAGCATCGTTACTCATTTGTCTACAACATTCAGCCTTCAGTCTCATCG
257 CACGCTC-AGAGACCTCCAGCATCGCTACTCATTTGTCTCCAACATTCAGCCTTCAGTCTTATCG
* * * * *
22497186 TACATTGTAATAACAAGTAGTTAGTAGTTACTAAAAGACTACTTACTATGATAATGCATATAATA
321 CACATTGTAATAACAACTAGTTAGTAGTTACTAAAAAACTACTTATTATGATAATGCATACAATA
* *
22497251 ATTTTACCACCTGACACACTTTCACTGCGAATAATCTTTACTGTGGAATATAAAATGATCTCATT
386 ATTTTACCACCTAACACACTTTCACTGCCAATAATCTTTACTGTGGAATATAAAATGATCTCATT
* * *
22497316 TTTCTTGGTTTTATAGAATTTTTTTCATAGAGAATTATTGTATGTATTGCACCACCAGTCCGTTT
451 TTTCTTGGTTTTATAGAATTTTTTTCATAGAGATTTATTGTATATATTGCACTACCAGTCCGTTT
* *
22497381 TAAAAATGGGTCGGGCTTCGAGCAAGGATTTTTCAACCCAAGTCCAACTCGATTTTATTAACCTA
516 TAAAAATGGGTCGGGCTTCGAGCAAGGATTTTTCAACCC-AGGCCAACCCGATTTTATTAACCTA
* * * *
22497446 AAATTTTTACCCTTGTTCCCACTTCCCAGCAGGCCCAGTCTTGATA-TCCCCTTTTCCGTTTCTA
580 AAAGTTTTACCCTTGTTCCCACTTCCCAGCAGACCCAGTCTTGATATTCCCC-TTTCCCTTTCCA
* *
22497510 ATCCCTATTTTTCCTTCCTTAATCCCTAATACTTAAATTTTTCCTTATTTATTGCTTCTTTGGTG
644 ATCCCTATTTTCCCTTCCTTAAT-CCTAATCCTTAAATTTTTCCTTATTTATTGCTTCTTTGGTG
** * ** *
22497575 TTGCCACCAACGTTGCTTA-TCTACCTTTTGCTGCTTTTTATTTGTTTCGTTGTCATTGCAGCCA
708 TTGCCACCATTGTTGC-TACTCTTCCTTTTGCTGC-TTTTCGTTGTTTCGTTGTCATTGCCGCCA
* * * * * *
22497639 TTGTTGCTTTTTTACCTTCTGCTTATTTTCTGCTTCTTCGCCAGTTGTTAGCTGCCACTGCTAAT
771 TTGTTGCTTTTTTACCTTCTACTTATTTTCTACTTCTTCGCTAGTCGTTAG-TGCCGCTGCTACT
** * *
22497704 TTTTGCTTCTCTGCCTTCTACAAATTCTACAACCTCAA
835 TTTCACTTCTCTACCTTCTACAAATTCTGCAACCTCAA
* * * * * *
22497742 TTATCCCACTCACCCATTCACTAATTCACAAAAATAGA-ACCCCCACCACGCTCAAAGACCTCCA
1 TT-CCCCACTCAACCATTCACTCATTCACAAAGACA-ACACCCCCACCACGCTCAGAGACCTCCA
* * * * *
22497806 ACGTCGCTGCTCATTTCTCTCCAACATTCAGCTTTCAAT-TACATCGCACGTTGTAATAACGACT
64 ACGTCGCTACTCATTTGTCTCCAACATTCAGCCTTCAATCT-CATCGCACATTGTAATAACAACT
* * * * *
22497870 AGTTAGTAGCTACTAGAAAGAAACTACTTACTATGATAATGCATGCAATAATTTTCCCACCTGAC
128 AGTTAGTAGTTACTA-AAACAAACTACTTATTATGATAATGCATACAATAATTTTACCACCTGAC
* * * *
22497935 ACACTTTCACCAGCCTTAGTTCCCCTACTCATCCATTCACTCATTCACAAAGACATCACCCCCAC
192 ACACTTTCACCAACCTCAGTTCCCCTACTCACCCATTCACTCATTCACAAAGACAACACCCCCAC
* ** *
22498000 CACGCTTAGAGACCTCCAGTGTCGCTACTCATTTGTCTCCAACATTCAGCCTACAGTC--ATCGC
257 CACGCTCAGAGACCTCCAGCATCGCTACTCATTTGTCTCCAACATTCAGCCTTCAGTCTTATCGC
* * *
22498063 ACATTGTAATAACAACTAGTTAATAATTACTTAAAAAACTACTTATTATGATAATGCATAAAATA
322 ACATTGTAATAACAACTAGTTAGTAGTTAC-TAAAAAACTACTTATTATGATAATGCATACAATA
* * * * * *
22498128 ATTTTACCACCTGACACACTTTTACTGCCAATAATCTTTACTGTTGAATGTAAATTGATCCCATT
386 ATTTTACCACCTAACACACTTTCACTGCCAATAATCTTTACTGTGGAATATAAAATGATCTCATT
* ***
22498193 TTTCTTGGTTTTATAAAAAACTTTTCATAGAGATTTATTGTATATATTGCACTACCAGTCCGTTT
451 TTTCTTGGTTTTATAGAATTTTTTTCATAGAGATTTATTGTATATATTGCACTACCAGTCCGTTT
* * *
22498258 TAAAAATGGGTCGGGCATCGAGTAAGGATTTTTCAA-CCATAGCCTAACCCGATTTTATTAACCT
516 TAAAAATGGGTCGGGCTTCGAGCAAGGATTTTTCAACCCA-GGCC-AACCCGATTTTATTAACCT
* * * * *
22498322 AAAAGTTTTACACTTGTTCTCGCTTCCTAGCAGACCCAGTTTTGATATTCCCCTTTCCCTTTCCA
579 AAAAGTTTTACCCTTGTTCCCACTTCCCAGCAGACCCAGTCTTGATATTCCCCTTTCCCTTTCCA
* * *
22498387 ATCCCTATTTTCCCTTCTTTAATCTCTAATCCTTAAATTTTTCCTTATTTATTGCATCTTTGGAG
644 ATCCCTATTTTCCCTTCCTTAATC-CTAATCCTTAAATTTTTCCTTATTTATTGCTTCTTTGGTG
* ** *
22498452 TTGCCACCGTTGTTGCTTTTCTTCCTTTTGCTGCTTTTCGTTTGTTTCATTGTCATT-CTCGCCA
708 TTGCCACCATTGTTGCTACTCTTCCTTTTGCTGCTTTTCG-TTGTTTCGTTGTCATTGC-CGCCA
* * *
22498516 TTGTTGCTTTTTTACCTTCTACTTAGTTTT-TACTACTTCGCAAGTCGTTAGACGCCGCTGCTAC
771 TTGTTGCTTTTTTACCTTCTACTTA-TTTTCTACTTCTTCGCTAGTCGTTAG-TGCCGCTGCTAC
22498580 ---T---TT-TC-A-C--CT-C----TCT---A---C--
834 TTTTCACTTCTCTACCTTCTACAAATTCTGCAACCTCAA
* * **
22498595 -T-----CTC--CCATTCACTCATTCACAAAGACATCACCCCCACCACGCTTAGAGACCTCCAGT
1 TTCCCCACTCAACCATTCACTCATTCACAAAGACAACACCCCCACCACGCTCAGAGACCTCCAAC
* *
22498652 GTCGCTACTCATTTGTCTCCAACATTCAGCCTAC-A-GTCATCGCACATTGTAATAACAACTAGT
66 GTCGCTACTCATTTGTCTCCAACATTCAGCCTTCAATCTCATCGCACATTGTAATAACAACTAGT
* * * *
22498715 TAATAATTACTTAAA-AAACTACTTATTATGATAATGCATAAAATAATTTTACCACCTGACACAC
131 TAGTAGTTACTAAAACAAACTACTTATTATGATAATGCATACAATAATTTTACCACCTGACACAC
22498779 TTT
196 TTT
22498782 TACTGCCAAT
Statistics
Matches: 2448, Mismatches: 299, Indels: 137
0.85 0.10 0.05
Matches are distributed among these distances:
840 48 0.02
841 3 0.00
842 32 0.01
843 2 0.00
844 74 0.03
846 3 0.00
852 1 0.00
855 1 0.00
858 1 0.00
861 3 0.00
865 1 0.00
866 2 0.00
868 1 0.00
870 2 0.00
871 2 0.00
874 1 0.00
875 124 0.05
876 808 0.33
877 854 0.35
878 165 0.07
882 1 0.00
885 6 0.00
886 310 0.13
887 3 0.00
ACGTcount: A:0.27, C:0.27, G:0.11, T:0.35
Consensus pattern (872 bp):
TTCCCCACTCAACCATTCACTCATTCACAAAGACAACACCCCCACCACGCTCAGAGACCTCCAAC
GTCGCTACTCATTTGTCTCCAACATTCAGCCTTCAATCTCATCGCACATTGTAATAACAACTAGT
TAGTAGTTACTAAAACAAACTACTTATTATGATAATGCATACAATAATTTTACCACCTGACACAC
TTTCACCAACCTCAGTTCCCCTACTCACCCATTCACTCATTCACAAAGACAACACCCCCACCACG
CTCAGAGACCTCCAGCATCGCTACTCATTTGTCTCCAACATTCAGCCTTCAGTCTTATCGCACAT
TGTAATAACAACTAGTTAGTAGTTACTAAAAAACTACTTATTATGATAATGCATACAATAATTTT
ACCACCTAACACACTTTCACTGCCAATAATCTTTACTGTGGAATATAAAATGATCTCATTTTTCT
TGGTTTTATAGAATTTTTTTCATAGAGATTTATTGTATATATTGCACTACCAGTCCGTTTTAAAA
ATGGGTCGGGCTTCGAGCAAGGATTTTTCAACCCAGGCCAACCCGATTTTATTAACCTAAAAGTT
TTACCCTTGTTCCCACTTCCCAGCAGACCCAGTCTTGATATTCCCCTTTCCCTTTCCAATCCCTA
TTTTCCCTTCCTTAATCCTAATCCTTAAATTTTTCCTTATTTATTGCTTCTTTGGTGTTGCCACC
ATTGTTGCTACTCTTCCTTTTGCTGCTTTTCGTTGTTTCGTTGTCATTGCCGCCATTGTTGCTTT
TTTACCTTCTACTTATTTTCTACTTCTTCGCTAGTCGTTAGTGCCGCTGCTACTTTTCACTTCTC
TACCTTCTACAAATTCTGCAACCTCAA
Found at i:22497220 original size:211 final size:207
Alignment explanation
Indices: 22496876--22497275 Score: 556
Period size: 211 Copynumber: 1.9 Consensus size: 207
22496866 TCCTCCACTA
* * * *
22496876 ACCCATTCACTCATTCACAGAGACAACACCCCCACCACGTTCTGAGACCTCCAATGTTACTGCTC
1 ACCCATTCACTAATTCACAAAGACAACACCCCCACCACGTCCAGAGACCTCCAATGTTAC--CTC
* * * **
22496941 ATTTGCATCCAACATTCAGCCTTCAGTCTCATCGCACATTGTAATAGCAATTAGTTCTTAGTTAC
64 ATTTGCATACAACATTCAGCCTTCAGTCTCATCGCACATTGTAATAACAAGTAGTTAGTAGTTAC
*
22497006 TAAAACAGACTACTTATTATGATAATGAATACAATAAATTTT-CCACCTGACACACTTTCACCAA
129 T-AAA-AGACTACTTACTATGATAATGAATACAAT-AATTTTACCACCTGACACACTTTCACCAA
22497070 CCTCAGCTCCCCTACTC
191 CCTCAGCTCCCCTACTC
*
22497087 ACCCATTTACTAATTCACAAAGACAACACCCCCACCACG-CCGAGAGACCTCCAGCATCGTTA-C
1 ACCCATTCACTAATTCACAAAGACAACACCCCCACCACGTCC-AGAGACCTCCA--AT-GTTACC
*
22497150 TCATTTGTC-TACAACATTCAGCCTTCAGTCTCATCGTACATTGTAATAACAAGTAGTTAGTAGT
62 TCATTTG-CATACAACATTCAGCCTTCAGTCTCATCGCACATTGTAATAACAAGTAGTTAGTAGT
* *
22497214 TACTAAAAGACTACTTACTATGATAATGCATATAATAATTTTACCACCTGACACACTTTCAC
126 TACTAAAAGACTACTTACTATGATAATGAATACAATAATTTTACCACCTGACACACTTTCAC
22497276 TGCGAATAAT
Statistics
Matches: 169, Mismatches: 14, Indels: 14
0.86 0.07 0.07
Matches are distributed among these distances:
208 6 0.04
209 45 0.27
210 4 0.02
211 107 0.63
212 1 0.01
213 2 0.01
214 4 0.02
ACGTcount: A:0.32, C:0.29, G:0.10, T:0.28
Consensus pattern (207 bp):
ACCCATTCACTAATTCACAAAGACAACACCCCCACCACGTCCAGAGACCTCCAATGTTACCTCAT
TTGCATACAACATTCAGCCTTCAGTCTCATCGCACATTGTAATAACAAGTAGTTAGTAGTTACTA
AAAGACTACTTACTATGATAATGAATACAATAATTTTACCACCTGACACACTTTCACCAACCTCA
GCTCCCCTACTC
Found at i:22499172 original size:632 final size:632
Alignment explanation
Indices: 22497959--22499414 Score: 2702
Period size: 632 Copynumber: 2.3 Consensus size: 632
22497949 CTTAGTTCCC
22497959 CTACTCAT-CCATTCACTCATTCACAAAGACATCACCCCCACCACGCTTAGAGACCTCCAGTGTC
1 CTACTC-TCCCATTCACTCATTCACAAAGACATCACCCCCACCACGCTTAGAGACCTCCAGTGTC
22498023 GCTACTCATTTGTCTCCAACATTCAGCCTACAGTCATCGCACATTGTAATAACAACTAGTTAATA
65 GCTACTCATTTGTCTCCAACATTCAGCCTACAGTCATCGCACATTGTAATAACAACTAGTTAATA
22498088 ATTACTTAAAAAACTACTTATTATGATAATGCATAAAATAATTTTACCACCTGACACACTTTTAC
130 ATTACTTAAAAAACTACTTATTATGATAATGCATAAAATAATTTTACCACCTGACACACTTTTAC
* **
22498153 TGCCAATAATCTTTACTGTTGAATGTAAATTGATCCCATTTTTCTTGGTTTTATAAAAAACTTTT
195 TGCCAATAATCTTTACTGTTGAATGTAAACTGATCCCATTTTTCTTGGTTTTATAAAAAAAATTT
22498218 CATAGAGATTTATTGTATATATTGCACTACCAGTCCGTTTTAAAAATGGGTCGGGCATCGAGTAA
260 CATAGAGATTTATTGTATATATTGCACTACCAGTCCGTTTTAAAAATGGGTCGGGCATCGAGTAA
22498283 GGATTTTTCAACCATAGCCTAACCCGATTTTATTAACCTAAAAGTTTTACACTTGTTCTCGCTTC
325 GGATTTTTCAACCATAGCCTAACCCGATTTTATTAACCTAAAAGTTTTACACTTGTTCTCGCTTC
22498348 CTAGCAGACCCAGTTTTGATATTCCCCTTTCCCTTTCCAATCCCTATTTTCCCTTCTTTAATCTC
390 CTAGCAGACCCAGTTTTGATATTCCCCTTTCCCTTTCCAATCCCTATTTTCCCTTCTTTAATCTC
22498413 TAATCCTTAAATTTTTCCTTATTTATTGCATCTTTGGAGTTGCCACCGTTGTTGCTTTTCTTCCT
455 TAATCCTTAAATTTTTCCTTATTTATTGCATCTTTGGAGTTGCCACCGTTGTTGCTTTTCTTCCT
22498478 TTTGCTGCTTTTCGTTTGTTTCATTGTCATTCTCGCCATTGTTGCTTTTTTACCTTCTACTTAGT
520 TTTGCTGCTTTTCGTTTGTTTCATTGTCATTCTCGCCATTGTTGCTTTTTTACCTTCTACTTAGT
22498543 TTTTACTACTTCGCAAGTCGTTAGACGCCGCTGCTACTTTTCACCTCT
585 TTTTACTACTTCGCAAGTCGTTAGACGCCGCTGCTACTTTTCACCTCT
22498591 CTACTCTCCCATTCACTCATTCACAAAGACATCACCCCCACCACGCTTAGAGACCTCCAGTGTCG
1 CTACTCTCCCATTCACTCATTCACAAAGACATCACCCCCACCACGCTTAGAGACCTCCAGTGTCG
22498656 CTACTCATTTGTCTCCAACATTCAGCCTACAGTCATCGCACATTGTAATAACAACTAGTTAATAA
66 CTACTCATTTGTCTCCAACATTCAGCCTACAGTCATCGCACATTGTAATAACAACTAGTTAATAA
22498721 TTACTTAAAAAACTACTTATTATGATAATGCATAAAATAATTTTACCACCTGACACACTTTTACT
131 TTACTTAAAAAACTACTTATTATGATAATGCATAAAATAATTTTACCACCTGACACACTTTTACT
22498786 GCCAATAATCTTTACTGTTGAATGTAAACTGATCCCATTTTTCTTGGTTTTATAAAAAAAATTTC
196 GCCAATAATCTTTACTGTTGAATGTAAACTGATCCCATTTTTCTTGGTTTTATAAAAAAAATTTC
22498851 ATAGAGATTTATTGTATATATTGCACTACCAGTCCGTTTTAAAAATGGGTCGGGCATCGAGTAAG
261 ATAGAGATTTATTGTATATATTGCACTACCAGTCCGTTTTAAAAATGGGTCGGGCATCGAGTAAG
22498916 GATTTTTCAACCCA-AGCCTAACCCGATTTTATTAACCTAAAAGTTTTACACTTGTTCTCGCTTC
326 GATTTTTCAA-CCATAGCCTAACCCGATTTTATTAACCTAAAAGTTTTACACTTGTTCTCGCTTC
22498980 CTAGCAGACCCAGTTTTGATATTCCCCTTTCCCTTTCCAATCCCTATTTTCCCTTCTTTAATCTC
390 CTAGCAGACCCAGTTTTGATATTCCCCTTTCCCTTTCCAATCCCTATTTTCCCTTCTTTAATCTC
22499045 TAATCCTTAAATTTTTCCTTATTTATTGCATCTTTGGAGTTGCCACCGTTGTTGCTTTTCTTCCT
455 TAATCCTTAAATTTTTCCTTATTTATTGCATCTTTGGAGTTGCCACCGTTGTTGCTTTTCTTCCT
22499110 TTTGCTGCTTTTCGTTTGTTTCATTGTCATTCTCGCCATTGTTGCTTTTTTACCTTCTACTTAGT
520 TTTGCTGCTTTTCGTTTGTTTCATTGTCATTCTCGCCATTGTTGCTTTTTTACCTTCTACTTAGT
22499175 TTTTACTACTTCGCAAGTCGTTAGACGCCGCTGCTACTTTTCACCTCT
585 TTTTACTACTTCGCAAGTCGTTAGACGCCGCTGCTACTTTTCACCTCT
* * * * * **
22499223 CTACTCTCCCATTCACTCATTCACAAAGACAACA-CCCCACCACGATCAAAAACCTCCAGCATCG
1 CTACTCTCCCATTCACTCATTCACAAAGACATCACCCCCACCACGCTTAGAGACCTCCAGTGTCG
** * *
22499287 CCGCTCATTTGTCTCCAACATTCAGCCTTCAGTCTCATCGCACATTGTAATAACAACTAGTTATT
66 CTACTCATTTGTCTCCAACATTCAGCCTACAG--TCATCGCACATTGTAATAACAACTAGTTAAT
* * *
22499352 AGTTACTAAAAAAACTACTTATTATGATAATGCATACAATAATTTTACCACCTGACACACTTT
129 AATTACTTAAAAAACTACTTATTATGATAATGCATAAAATAATTTTACCACCTGACACACTTT
22499415 CACCAACATC
Statistics
Matches: 803, Mismatches: 17, Indels: 7
0.97 0.02 0.01
Matches are distributed among these distances:
631 54 0.07
632 656 0.82
633 93 0.12
ACGTcount: A:0.26, C:0.26, G:0.11, T:0.37
Consensus pattern (632 bp):
CTACTCTCCCATTCACTCATTCACAAAGACATCACCCCCACCACGCTTAGAGACCTCCAGTGTCG
CTACTCATTTGTCTCCAACATTCAGCCTACAGTCATCGCACATTGTAATAACAACTAGTTAATAA
TTACTTAAAAAACTACTTATTATGATAATGCATAAAATAATTTTACCACCTGACACACTTTTACT
GCCAATAATCTTTACTGTTGAATGTAAACTGATCCCATTTTTCTTGGTTTTATAAAAAAAATTTC
ATAGAGATTTATTGTATATATTGCACTACCAGTCCGTTTTAAAAATGGGTCGGGCATCGAGTAAG
GATTTTTCAACCATAGCCTAACCCGATTTTATTAACCTAAAAGTTTTACACTTGTTCTCGCTTCC
TAGCAGACCCAGTTTTGATATTCCCCTTTCCCTTTCCAATCCCTATTTTCCCTTCTTTAATCTCT
AATCCTTAAATTTTTCCTTATTTATTGCATCTTTGGAGTTGCCACCGTTGTTGCTTTTCTTCCTT
TTGCTGCTTTTCGTTTGTTTCATTGTCATTCTCGCCATTGTTGCTTTTTTACCTTCTACTTAGTT
TTTACTACTTCGCAAGTCGTTAGACGCCGCTGCTACTTTTCACCTCT
Found at i:22499603 original size:209 final size:209
Alignment explanation
Indices: 22499231--22499626 Score: 634
Period size: 210 Copynumber: 1.9 Consensus size: 209
22499221 CTCTACTCTC
* *
22499231 CCATTCACTCATTCACAAAGACAACACCCCACCACGATCAAAAACCTCCAGCATCGCCGCTCATT
1 CCATTCACTCATTCACAAACACAACACCCCACCACGATCAAAAACCTCCAGCATCGCCACTCATT
22499296 TGTCTCCAACATTCAGCCTTCAGTCTCATCGCACATTGTAATAACAACTAGTTATTAGTTACTAA
66 TGTCTCCAACATTCAGCCTTCAGTCTCATCGCACATTGTAATAACAACTAGTTATTAGTTACTAA
*
22499361 AAAAACTACTTATTATGATAATGCATACAATAATTTTACCACCTGACACACTTTCACCAACATCA
131 AAAAACTACTTATTATGATAATACATACAATAATTTTACCACCTGACACACTTTCACCAACATCA
22499426 GTTCCCCCACTCAA
196 GTTCCCCCACTCAA
* * * * * * *
22499440 CCATTCACTCATTCACAAACACAACACCCCCACCACGCTTAGAGACCTCTAGCGTCGCTACTCAT
1 CCATTCACTCATTCACAAACACAACA-CCCCACCACGATCAAAAACCTCCAGCATCGCCACTCAT
22499505 TTGTCTCCAACATTCAGCCTTCAGTCTCATCGCACATTGTAATAACAACTAGTT-TGTAGTTACT
65 TTGTCTCCAACATTCAGCCTTCAGTCTCATCGCACATTGTAATAACAACTAGTTAT-TAGTTACT
* * * *
22499569 -AAAAAACTACTTATTTTGATAATATATACAATAATTTTACCACTTGATACACTTTCAC
129 AAAAAAACTACTTATTATGATAATACATACAATAATTTTACCACCTGACACACTTTCAC
22499627 TGCCAATAAT
Statistics
Matches: 171, Mismatches: 14, Indels: 4
0.90 0.07 0.02
Matches are distributed among these distances:
209 79 0.46
210 92 0.54
ACGTcount: A:0.33, C:0.30, G:0.08, T:0.29
Consensus pattern (209 bp):
CCATTCACTCATTCACAAACACAACACCCCACCACGATCAAAAACCTCCAGCATCGCCACTCATT
TGTCTCCAACATTCAGCCTTCAGTCTCATCGCACATTGTAATAACAACTAGTTATTAGTTACTAA
AAAAACTACTTATTATGATAATACATACAATAATTTTACCACCTGACACACTTTCACCAACATCA
GTTCCCCCACTCAA
Found at i:22500472 original size:210 final size:211
Alignment explanation
Indices: 22500085--22500713 Score: 847
Period size: 210 Copynumber: 3.0 Consensus size: 211
22500075 ACAAATTCTG
* * * * *
22500085 CAACGTCAGTTCCCCCACTCACCCATTCACTCATTCACAAAGACAACAACCGCACCA-TACTCAG
1 CAACCTCAGTTTCCCCACTCACCCATTCACTCATTCACAAAGACAACACCCCCACCACGACTCAG
* * * ** * * *
22500149 AGACCTCCAGCATTGTTGTTTATTTGTCTCCAACAATCAGCCTTCAGTCTCATCACACATTGTAA
66 AGACCTCCAGCGTCGCTACTCATTTGTCTCCAACATTCAGCCTTCAGTCTCATCGCACATTGTAA
* * *
22500214 TAACAACTAGTTAGTAGTTACTATAAAAACTACTTATTATGATAATGCATACAATAATTTTACAA
131 TAATAACTAGTTAGTAGTTACTAAAAAAACTACTTATTATGATAATGCATACAATAATTTTACCA
*
22500279 CTTGACACACTTTCAC
196 CCTGACACACTTTCAC
* *
22500295 CAACCTTAGTTTCCCCACTCAGCCATTCACTCATTCACAAAGACAACACCCCCACCACGAC-CAG
1 CAACCTCAGTTTCCCCACTCACCCATTCACTCATTCACAAAGACAACACCCCCACCACGACTCAG
* * *
22500359 AGACCTCTAGCGTCGCTACTCATTTGTCTCCAACATTTAGCCTTCAGTCTCATCGCATATTGTAA
66 AGACCTCCAGCGTCGCTACTCATTTGTCTCCAACATTCAGCCTTCAGTCTCATCGCACATTGTAA
* * * * * *
22500424 TAATAGCTAGTTAG-AATTACTAACAAAAACTACTCAATATGTTAATGCATTCAATAATTTTACC
131 TAATAACTAGTTAGTAGTTACTAA-AAAAACTACTTATTATGATAATGCATACAATAATTTTACC
*
22500488 ACCTGACACACTTACAC
195 ACCTGACACACTTTCAC
*
22500505 CAACCTCAG-TTCCCCTACTCACCCATTCATTCATTCACAAAGACAACACCCCCACCACG-CTCA
1 CAACCTCAGTTTCCCC-ACTCACCCATTCACTCATTCACAAAGACAACACCCCCACCACGACTCA
* * *
22500568 AAGACCTCCAGCGTCACTACTCATTTGTCTCCAACATTCAACAC-TCAGTCTCATCGCACATTGT
65 GAGACCTCCAGCGTCGCTACTCATTTGTCTCCAACATTCAGC-CTTCAGTCTCATCGCACATTGT
* ** *
22500632 AATAATAACTAGTTAGTAGTTACTAAAATAACTACTTATTACAATAATGCCTACAATAATTTTAC
129 AATAATAACTAGTTAGTAGTTACTAAAAAAACTACTTATTATGATAATGCATACAATAATTTTAC
*
22500697 CACCTAACACACTTTCA
194 CACCTGACACACTTTCA
22500714 ATGCCAATTA
Statistics
Matches: 363, Mismatches: 50, Indels: 12
0.85 0.12 0.03
Matches are distributed among these distances:
209 14 0.04
210 338 0.93
211 11 0.03
ACGTcount: A:0.33, C:0.30, G:0.08, T:0.28
Consensus pattern (211 bp):
CAACCTCAGTTTCCCCACTCACCCATTCACTCATTCACAAAGACAACACCCCCACCACGACTCAG
AGACCTCCAGCGTCGCTACTCATTTGTCTCCAACATTCAGCCTTCAGTCTCATCGCACATTGTAA
TAATAACTAGTTAGTAGTTACTAAAAAAACTACTTATTATGATAATGCATACAATAATTTTACCA
CCTGACACACTTTCAC
Found at i:22501533 original size:211 final size:210
Alignment explanation
Indices: 22501169--22501800 Score: 1014
Period size: 211 Copynumber: 3.0 Consensus size: 210
22501159 TTAAATTCTG
* *
22501169 CAACCTCAATTCCCCCACTCAACCATTCACTCATTCACAAAGACAACACCCCCATCACGCTCAGA
1 CAACCTCACTTCCCCTACTC-ACCATTCACTCATTCACAAAGACAACACCCCCATCACGCTCAGA
* *
22501234 GACCTCTAGCATCGCTGCTCATTTATCTCCAACATTCACCCTACAGTCTAATTACACATTGTAAT
65 GACCTCCAGCATCGCTGCTCATTTATCTCCAACATTCACCCTACAGTCTAATCACACATTGTAAT
22501299 AACAACTAGTTAGTAGTTACTAAAAAAAACTACTTATTATGATAATGCATACAATAGTTGTACCA
130 AACAACTAGTTAGTAGTTACTAAAAAAAACTACTTATTATGATAATGCATACAATAGTTGTACCA
22501364 CCTGACATACTTTCAC
195 CCTGACATACTTTCAC
22501380 CAACCTCACTTCCCCTACTCACTCATTCACTCATTCACAAAGACAACACCCCCATCACGCTCAGA
1 CAACCTCACTTCCCCTACTCAC-CATTCACTCATTCACAAAGACAACACCCCCATCACGCTCAGA
22501445 GACCTCCAGCATCGCTGCTCATTTATCTCCAACATTCACCCTACAGTCTAATCACACATTGTAAT
65 GACCTCCAGCATCGCTGCTCATTTATCTCCAACATTCACCCTACAGTCTAATCACACATTGTAAT
**
22501510 AACAACTAGTTAGTAGTTACTAAAAAAAACTACTTATTATGATAAAACATACAATAGTTGTACCA
130 AACAACTAGTTAGTAGTTACTAAAAAAAACTACTTATTATGATAATGCATACAATAGTTGTACCA
22501575 CCTGACATACTTTCAC
195 CCTGACATACTTTCAC
* *
22501591 CAACCTCACTTCCCCTACTCACCCATTCACTCATTCATAAAGACAACACCCCCACCACGCTCAGA
1 CAACCTCACTTCCCCTACTCA-CCATTCACTCATTCACAAAGACAACACCCCCATCACGCTCAGA
** * * * * * * * * **
22501656 GACCTCCAGTGTCACTACTCATTTGTCTCTAACTTTCAGCCTTCAGTCTCATCGTACATTGTAAT
65 GACCTCCAGCATCGCTGCTCATTTATCTCCAACATTCACCCTACAGTCTAATCACACATTGTAAT
* * *
22501721 AACAACTAGTTAGTAGTTACT-AAAATAACTACTTATTATGATAATGCATACAATAATTTTACCA
130 AACAACTAGTTAGTAGTTACTAAAAAAAACTACTTATTATGATAATGCATACAATAGTTGTACCA
*
22501785 CCTGACACACTTTCAC
195 CCTGACATACTTTCAC
22501801 TACCAATAAT
Statistics
Matches: 393, Mismatches: 26, Indels: 5
0.93 0.06 0.01
Matches are distributed among these distances:
210 55 0.14
211 337 0.86
212 1 0.00
ACGTcount: A:0.34, C:0.31, G:0.08, T:0.28
Consensus pattern (210 bp):
CAACCTCACTTCCCCTACTCACCATTCACTCATTCACAAAGACAACACCCCCATCACGCTCAGAG
ACCTCCAGCATCGCTGCTCATTTATCTCCAACATTCACCCTACAGTCTAATCACACATTGTAATA
ACAACTAGTTAGTAGTTACTAAAAAAAACTACTTATTATGATAATGCATACAATAGTTGTACCAC
CTGACATACTTTCAC
Found at i:22502652 original size:210 final size:210
Alignment explanation
Indices: 22502272--22502675 Score: 661
Period size: 211 Copynumber: 1.9 Consensus size: 210
22502262 CAATTCCTTC
*
22502272 ACTCACCCATTCACTCATTCACAGAGACAACACCCCACCACGCTCAGAGACCTCCAATGTCACTA
1 ACTCACCCATTCACTCATTCACAAAGACAACACCCCACCACGCTCAGAGACCTCCAATGTCACTA
* *
22502337 CTCATTTGTATCCAACATTCAGCCTTCAGTCTCATCGCACATTGTAATAACAACTAGTTCGTAGT
66 CTCATTTGTATCCAACATTCAGCCTTCAGTCTCATCGCACATTGTAATAACAACTAGCTAGTAGT
* *
22502402 TACTAAAAAAAACTACTTATTATGATAATGCATGCAATAATTTTCCCACCTGACACACTTTCACC
131 TACTAAAAAAAACTACTTATTATGATAATGCATACAATAATTTTACCACCTGACACACTTTCACC
22502467 AACCTTAGTTCCCCT
196 AACCTTAGTTCCCCT
*
22502482 ACTCACCCATTCACTCATTCACAAAGACAACACGCCCACCACGCTCAGAGACCTCCAGCAT-T-G
1 ACTCACCCATTCACTCATTCACAAAGACAACAC-CCCACCACGCTCAGAGACCTCCA--ATGTCA
* **
22502545 CTACTCATTTGTCTCCAACATTTGGCCTTCAGTCTCATCGCACATTGTAATAACAACTAGCTAGT
63 CTACTCATTTGTATCCAACATTCAGCCTTCAGTCTCATCGCACATTGTAATAACAACTAGCTAGT
* *
22502610 AGTTACT-AATAAAACTACTTATTTTGATAATGCATACAATAATTTTACCACCTGACACACTTTC
128 AGTTACTAAAAAAAACTACTTATTATGATAATGCATACAATAATTTTACCACCTGACACACTTTC
22502674 AC
193 AC
22502676 TGCCAATAAT
Statistics
Matches: 180, Mismatches: 11, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
210 87 0.48
211 90 0.50
212 1 0.01
213 2 0.01
ACGTcount: A:0.32, C:0.31, G:0.09, T:0.28
Consensus pattern (210 bp):
ACTCACCCATTCACTCATTCACAAAGACAACACCCCACCACGCTCAGAGACCTCCAATGTCACTA
CTCATTTGTATCCAACATTCAGCCTTCAGTCTCATCGCACATTGTAATAACAACTAGCTAGTAGT
TACTAAAAAAAACTACTTATTATGATAATGCATACAATAATTTTACCACCTGACACACTTTCACC
AACCTTAGTTCCCCT
Found at i:22503467 original size:876 final size:870
Alignment explanation
Indices: 22501380--22503813 Score: 3413
Period size: 876 Copynumber: 2.8 Consensus size: 870
22501370 ATACTTTCAC
* * * *
22501380 CAACCTCACTTCCCCTACTCACTCATTCACTCATTCACAAAGACAACACCCCCATCACGCTCAGA
1 CAACCTCAATTCCCCCACTCACCCATTCACTCATTCACAAAGACAACA-CCCCACCACGCTCAGA
** * * * * *
22501445 GACCTCCAGCATCGCTGCTCATTTATCTCCAACATTCACCCTACAGTCTAATCACACATTGTAAT
65 GACCTCCAGTGTCGCTGCTCATTTGTCTCCAACATTCAGCCTTCAGTCTCATCGCACATTGTAAT
** * * *
22501510 AACAACTAGTTAGTAGTTACTAAAAAAAACTACTTATTATGATAAAACATACAATAGTTGTACCA
130 AACAACTAGTTAGTAGTTACTAAAAAAAACTACTTATTATGATAATGCATGCAATAATTTTACCA
* * *
22501575 CCTGACATACTTTCACCAACCTCACTTCCCCTACTCACCCATTCACTCATTCATAAAGACAACAC
195 CCTGACACACTTTCACCAACCTCAGTTCCCCTACTCACCCATTCACTCATTCACAAAGACAACAC
* * *
22501640 CCCCACCACGCTCAGAGACCTCCAGTGTCACTACTCATTTGTCTCTAAC-TTTCAGCCTTCAGTC
260 CCCCACCACGCTCAGAGACCTCCAGCGTCGCTACTCATTTGTCTCCAACATTT-AGCCTTCAGTC
22501704 -TCATCGTACATTGTAATAACAACTAGTTAGTAGTTACTAA-AATAACTACTTATTATGATAATG
324 ATCA-C--ACATTGTAATAACAACTAGTTAGTAGTTACTAATAA-AACTACTTATTATGATAATG
*
22501767 CATACAATAATTTTACCACCTGACACACTTTCACTACCAATAATCTTTACTGTGGAATATAAAAT
385 CATACAATAATTTTACCACCTGACACACTTTCACTGCCAATAATCTTTACTGTGGAATAT-AAAT
* *
22501832 TATCTCATTTTTCTTGGTTTTATAG-CTTTTTTCATAGAGATTTATTCTATATATTGCACTACCA
449 TATCTCATTTTTCTTGGTTTTATAGAATTTTTTCATAGAGATTTATTGTATATATTGCACTACCA
* * * * * *
22501896 GTCCGTTTTAAAAATAGGTCGAGCTTCGAGCAAGGATTTTTCAACCCAGGCCCAGCCCGATTTTA
514 GTCCGTTTTAAAAATGGGTCGGGCTTCGAACGAGGATTTTTCAACCCAAG-CCAGCCTGATTTTA
* * *
22501961 TTAACCTAAAAGGTTTACCCTTGTTCCCACTTCCCACTAGACCCAGTCTTGATATTCCCCTTTTT
578 TTAACCTAAAAGTTTTACCCTTGTTCCCACTTCCCACT-GACCCAGTCTTTATATT-CCCTTTCT
* *
22502026 CGTT-CCAATCCCTATTTTCCCTTCCTTAATCCCTAATCCTTAAATTTTTACTTATTTATTACTT
641 C-TTCCCAATCCCTATTTTCCCTTCCTTAATCCCTGATCCTTAAATTTTTACCTATTTATTACTT
* ** *
22502090 CTTTGGTGTTGCCACCATTGTTGTTTCTCTTCTTTTTACTGGTTTTCAGTTGTTTCGTTATTATT
705 CTTTGGTGTTGCCACCATTATTGTTTCTCTTCTTTTTACTACTTTTCAGTTGTTTCGTTATCATT
* * * *
22502155 GCCGTCATTGTTGCTTTTTTACCTTCTGCTAAGTTTCTACTTCTTCGCTAGTCATTAGTTGCCGC
770 GCAGCCATTGTTGCTTTTTTACCTTCTGCTAAGTTTCTACTTATTCGCTAGTCATTAGATGCCGC
* *
22502220 TGCTACTTTTCGCTTCTCCACCTTCTGTAAATTCTG
835 TGCTACTTTTCGCTTCTCCACCTTCTGCAAATTCTA
** *
22502256 CAACCTCAATTCCTTCACTCACCCATTCACTCATTCACAGAGACAACACCCCACCACGCTCAGAG
1 CAACCTCAATTCCCCCACTCACCCATTCACTCATTCACAAAGACAACACCCCACCACGCTCAGAG
* * * *
22502321 ACCTCCAATGTCACTACTCATTTGTATCCAACATTCAGCCTTCAGTCTCATCGCACATTGTAATA
66 ACCTCCAGTGTCGCTGCTCATTTGTCTCCAACATTCAGCCTTCAGTCTCATCGCACATTGTAATA
* *
22502386 ACAACTAGTTCGTAGTTACTAAAAAAAACTACTTATTATGATAATGCATGCAATAATTTTCCCAC
131 ACAACTAGTTAGTAGTTACTAAAAAAAACTACTTATTATGATAATGCATGCAATAATTTTACCAC
* *
22502451 CTGACACACTTTCACCAACCTTAGTTCCCCTACTCACCCATTCACTCATTCACAAAGACAACACG
196 CTGACACACTTTCACCAACCTCAGTTCCCCTACTCACCCATTCACTCATTCACAAAGACAACACC
* * *
22502516 CCCACCACGCTCAGAGACCTCCAGCATTGCTACTCATTTGTCTCCAACATTTGGCCTTCAGTCTC
261 CCCACCACGCTCAGAGACCTCCAGCGTCGCTACTCATTTGTCTCCAACATTTAGCCTTCAG--TC
* * *
22502581 ATCGCACATTGTAATAACAACTAGCTAGTAGTTACTAATAAAACTACTTATTTTGATAATGCATA
324 ATCACACATTGTAATAACAACTAGTTAGTAGTTACTAATAAAACTACTTATTATGATAATGCATA
22502646 CAATAATTTTACCACCTGACACACTTTCACTGCCAATAATCTTTACTGTGGAATATAAATTATCT
389 CAATAATTTTACCACCTGACACACTTTCACTGCCAATAATCTTTACTGTGGAATATAAATTATCT
* * *
22502711 CATTTTTCTTGGTTTTATAGAATTTTTATCATAAAGAATTATTGTATGTATTGCACTACCAGTCC
454 CATTTTTCTTGGTTTTATAGAATTTTT-TCATAGAGATTTATTGTATATATTGCACTACCAGTCC
*
22502776 ATTTTAAAAATGGGTCGGGCTTCGAACGAGGATTTTTCAACCCAAGCCTAGCCTGATTTTATTAA
518 GTTTTAAAAATGGGTCGGGCTTCGAACGAGGATTTTTCAACCCAAGCC-AGCCTGATTTTATTAA
* * * * *
22502841 GCTAAAAGTTTTTCCCTTGTTCCCTCTACCCAGCTGACCTAGTCTTTATATTCTCCTTTCTCTTC
582 CCTAAAAGTTTTACCCTTGTTCCCACTTCCCA-CTGACCCAGTCTTTATATTC-CCTTTCTCTTC
* * * *
22502906 CCAATCCCTATTTTTCCTTCCTCAATCCCTGATCCTTAATTTTTTCCCTATTTATTACTTCTTTG
645 CCAATCCCTATTTTCCCTTCCTTAATCCCTGATCCTTAAATTTTTACCTATTTATTACTTCTTTG
* *
22502971 GTGTTGCCACCATTATT-TCTTCTCTGTC-TTTTGCTACTTTTC-GTTTGTTTCGTTGTCATTGC
710 GTGTTGCCACCATTATTGT-TTCTCT-TCTTTTTACTACTTTTCAG-TTGTTTCGTTATCATTGC
* * * *
22503033 AGCCATTGTTTCTTTTTTACCTTCTGC-ATAGTTTTTGCTTATTCGCTAGTCGTTAGATGCCGCT
772 AGCCATTGTTGCTTTTTTACCTTCTGCTA-AGTTTCTACTTATTCGCTAGTCATTAGATGCCGCT
*
22503097 GCTACTTTTCGCTTCTCTACCTTCTGCAAATTCTA
836 GCTACTTTTCGCTTCTCCACCTTCTGCAAATTCTA
* * *
22503132 CAACCTCAATTCCCCCACTCCCCCATTCACTCATTCACAAAGACAGCACCCCTACCACGCTCAAA
1 CAACCTCAATTCCCCCACTCACCCATTCACTCATTCACAAAGACAACACCCC-ACCACGCTCAGA
* *
22503197 GACCTCCAGTGTCGCTGCTCATTTGTCTCCAACATTCAGCTTTCAGTTTCATCGCACATTGTAAT
65 GACCTCCAGTGTCGCTGCTCATTTGTCTCCAACATTCAGCCTTCAGTCTCATCGCACATTGTAAT
* *
22503262 AACGACTAGTTAGTAGTTACTAAAAAGAAACTACTTACTATGATAATGCATGCAATAATTTTACC
130 AACAACTAGTTAGTAGTTACTAAAAA-AAACTACTTATTATGATAATGCATGCAATAATTTTACC
* * * *
22503327 ACCTGACACACTTTCACCAGCCTCAGTTCCCCTACTTATCCATTCACTCATTCACAAAGACATCA
194 ACCTGACACACTTTCACCAACCTCAGTTCCCCTACTCACCCATTCACTCATTCACAAAGACAACA
* * *
22503392 CCCCCACCATGCTTAGAGACCTCTAGCGTCGCTACTCATTTGTCTCCAACATTTAGCCTTCAGTC
259 CCCCCACCACGCTCAGAGACCTCCAGCGTCGCTACTCATTTGTCTCCAACATTTAGCCTTCAGTC
* *
22503457 ATCACACATTGTAATAACAACTAGTTAATAGTTACT-ATAAAAACTACTTACTATGATAATGCAT
324 ATCACACATTGTAATAACAACTAGTTAGTAGTTACTAAT-AAAACTACTTATTATGATAATGCAT
* * * * *
22503521 AAAATAATTTTACCACTTGACACACTTTTACTGCCAATAATCTTTACTGTGGAATGTAAACTAAT
388 ACAATAATTTTACCACCTGACACACTTTCACTGCCAATAATCTTTACTGTGGAATATAAA-TTAT
* * *
22503586 GTCATTTTTCTTAGTTTTATAGAATATTTTTCATAGAGATTTATTGTATATATTGCACTACTAGT
452 CTCATTTTTCTTGGTTTTATAGAAT-TTTTTCATAGAGATTTATTGTATATATTGCACTACCAGT
* * * *
22503651 CCGTTTTACAAATGGGTCGGGTTTC-AA-GTAAGGATTTTTCAACCCAATCC-CCACTCGATTTT
516 CCGTTTTAAAAATGGGTCGGGCTTCGAACG--AGGATTTTTCAACCCAAGCCAGC-CT-GATTTT
* *
22503713 ATTAACCTAAAAGTTTTACCCTTGTTCCCGCTTCCCAACAGACCCAGT-TTTGATATTCCCATTT
577 ATTAACCTAAAAGTTTTACCCTTGTTCCCACTTCCC-ACTGACCCAGTCTTT-ATATTCCC-TTT
** *
22503777 C-CCACTGCAATCCCTATTTTCCCTTCCTTAATCCCTG
639 CTCTTC-CCAATCCCTATTTTCCCTTCCTTAATCCCTG
22503814 TATGGCCCAA
Statistics
Matches: 1387, Mismatches: 143, Indels: 55
0.88 0.09 0.03
Matches are distributed among these distances:
874 29 0.02
875 366 0.26
876 550 0.40
877 283 0.20
878 159 0.11
ACGTcount: A:0.27, C:0.27, G:0.11, T:0.35
Consensus pattern (870 bp):
CAACCTCAATTCCCCCACTCACCCATTCACTCATTCACAAAGACAACACCCCACCACGCTCAGAG
ACCTCCAGTGTCGCTGCTCATTTGTCTCCAACATTCAGCCTTCAGTCTCATCGCACATTGTAATA
ACAACTAGTTAGTAGTTACTAAAAAAAACTACTTATTATGATAATGCATGCAATAATTTTACCAC
CTGACACACTTTCACCAACCTCAGTTCCCCTACTCACCCATTCACTCATTCACAAAGACAACACC
CCCACCACGCTCAGAGACCTCCAGCGTCGCTACTCATTTGTCTCCAACATTTAGCCTTCAGTCAT
CACACATTGTAATAACAACTAGTTAGTAGTTACTAATAAAACTACTTATTATGATAATGCATACA
ATAATTTTACCACCTGACACACTTTCACTGCCAATAATCTTTACTGTGGAATATAAATTATCTCA
TTTTTCTTGGTTTTATAGAATTTTTTCATAGAGATTTATTGTATATATTGCACTACCAGTCCGTT
TTAAAAATGGGTCGGGCTTCGAACGAGGATTTTTCAACCCAAGCCAGCCTGATTTTATTAACCTA
AAAGTTTTACCCTTGTTCCCACTTCCCACTGACCCAGTCTTTATATTCCCTTTCTCTTCCCAATC
CCTATTTTCCCTTCCTTAATCCCTGATCCTTAAATTTTTACCTATTTATTACTTCTTTGGTGTTG
CCACCATTATTGTTTCTCTTCTTTTTACTACTTTTCAGTTGTTTCGTTATCATTGCAGCCATTGT
TGCTTTTTTACCTTCTGCTAAGTTTCTACTTATTCGCTAGTCATTAGATGCCGCTGCTACTTTTC
GCTTCTCCACCTTCTGCAAATTCTA
Found at i:22503548 original size:208 final size:211
Alignment explanation
Indices: 22503154--22503548 Score: 607
Period size: 212 Copynumber: 1.9 Consensus size: 211
22503144 CCCCACTCCC
* * *
22503154 CCATTCACTCATTCACAAAGACAGCACCCCTACCACGCTCAAAGACCTCCAGTGTCGCTGCTCAT
1 CCATTCACTCATTCACAAAGACAGCACCCCCACCACGCTCAAAGACCTCCAGCGTCGCTACTCAT
* * * *
22503219 TTGTCTCCAACATTCAGCTTTCAGTTTCATCGCACATTGTAATAACGACTAGTTAGTAGTTACTA
66 TTGTCTCCAACATTCAGCCTTCAG-TTCATCACACATTGTAATAACAACTAGTTAATAGTTACTA
**
22503284 AAAAGAAACTACTTACTATGATAATGCATGCAATAATTTTACCACCTGACACACTTTCACCAGCC
130 AAAAGAAACTACTTACTATGATAATGCATAAAATAATTTTACCACCTGACACACTTTCACCAGCC
22503349 TCAGTTCCCCTACTTAT
195 TCAGTTCCCCTACTTAT
* * * * *
22503366 CCATTCACTCATTCACAAAGACATCACCCCCACCATGCTTAGAGACCTCTAGCGTCGCTACTCAT
1 CCATTCACTCATTCACAAAGACAGCACCCCCACCACGCTCAAAGACCTCCAGCGTCGCTACTCAT
*
22503431 TTGTCTCCAACATTTAGCCTTCAG-TCATCACACATTGTAATAACAACTAGTTAATAGTTACT-A
66 TTGTCTCCAACATTCAGCCTTCAGTTCATCACACATTGTAATAACAACTAGTTAATAGTTACTAA
* *
22503494 TAA-AAACTACTTACTATGATAATGCATAAAATAATTTTACCACTTGACACACTTT
131 AAAGAAACTACTTACTATGATAATGCATAAAATAATTTTACCACCTGACACACTTT
22503549 TACTGCCAAT
Statistics
Matches: 166, Mismatches: 17, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
208 49 0.30
209 3 0.02
210 35 0.21
212 79 0.48
ACGTcount: A:0.32, C:0.28, G:0.10, T:0.30
Consensus pattern (211 bp):
CCATTCACTCATTCACAAAGACAGCACCCCCACCACGCTCAAAGACCTCCAGCGTCGCTACTCAT
TTGTCTCCAACATTCAGCCTTCAGTTCATCACACATTGTAATAACAACTAGTTAATAGTTACTAA
AAAGAAACTACTTACTATGATAATGCATAAAATAATTTTACCACCTGACACACTTTCACCAGCCT
CAGTTCCCCTACTTAT
Found at i:22503906 original size:12 final size:12
Alignment explanation
Indices: 22503889--22503914 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
22503879 ACAACCTCCA
22503889 AAGCCCAAACCT
1 AAGCCCAAACCT
22503901 AAGCCCAAACCT
1 AAGCCCAAACCT
22503913 AA
1 AA
22503915 ATGCACCTAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.46, C:0.38, G:0.08, T:0.08
Consensus pattern (12 bp):
AAGCCCAAACCT
Found at i:22504003 original size:13 final size:13
Alignment explanation
Indices: 22503985--22504128 Score: 116
Period size: 13 Copynumber: 11.6 Consensus size: 13
22503975 AAATATCTTT
22503985 ACTCCACTAAACC
1 ACTCCACTAAACC
22503998 ACT-C-C--AACC
1 ACTCCACTAAACC
22504007 ACTCCACTAAACC
1 ACTCCACTAAACC
*
22504020 ACTCCAACCACTCTAACC
1 ACT----CCACT-AAACC
*
22504038 ACTCCACTAAGCC
1 ACTCCACTAAACC
*
22504051 ACTACACTAAACC
1 ACTCCACTAAACC
22504064 ACTCCACTAAACC
1 ACTCCACTAAACC
22504077 AC-CC-C--AACC
1 ACTCCACTAAACC
22504086 AC-CCTACTAAACC
1 ACTCC-ACTAAACC
22504099 ACTCCACTAAACC
1 ACTCCACTAAACC
22504112 AC-CC-C--AACC
1 ACTCCACTAAACC
22504121 ACTCCACT
1 ACTCCACT
22504129 TGCCTACAAA
Statistics
Matches: 108, Mismatches: 6, Indels: 35
0.72 0.04 0.23
Matches are distributed among these distances:
9 21 0.19
10 3 0.03
11 6 0.06
12 5 0.05
13 54 0.50
14 7 0.06
17 5 0.05
18 7 0.06
ACGTcount: A:0.36, C:0.49, G:0.01, T:0.14
Consensus pattern (13 bp):
ACTCCACTAAACC
Found at i:22504008 original size:9 final size:9
Alignment explanation
Indices: 22503994--22504043 Score: 55
Period size: 9 Copynumber: 5.1 Consensus size: 9
22503984 TACTCCACTA
22503994 AACCACTCC
1 AACCACTCC
22504003 AACCACTCCAC
1 AACCACT-C-C
22504014 TAAACCACTCC
1 --AACCACTCC
*
22504025 AACCACTCT
1 AACCACTCC
22504034 AACCACTCC
1 AACCACTCC
22504043 A
1 A
22504044 CTAAGCCACT
Statistics
Matches: 35, Mismatches: 2, Indels: 8
0.78 0.04 0.18
Matches are distributed among these distances:
9 24 0.69
10 1 0.03
11 2 0.06
12 1 0.03
13 7 0.20
ACGTcount: A:0.36, C:0.50, G:0.00, T:0.14
Consensus pattern (9 bp):
AACCACTCC
Found at i:22504010 original size:22 final size:22
Alignment explanation
Indices: 22503985--22504128 Score: 102
Period size: 22 Copynumber: 6.4 Consensus size: 22
22503975 AAATATCTTT
22503985 ACTCCACTAAACCACTCCAACC
1 ACTCCACTAAACCACTCCAACC
22504007 ACTCCACTAAACCACTCCAACC
1 ACTCCACTAAACCACTCCAACC
22504029 ACT---CT-AACCACTCCACTAAGCC
1 ACTCCACTAAACCACT-C-C-AA-CC
*
22504051 ACTACACTAAACCACTCCACTAAACC
1 ACTCCACTAAACCACT-C-C--AACC
* * * *
22504077 ACCCCAAC-CACCCTACT-AAACC
1 ACTCC-ACTAAACC-ACTCCAACC
*
22504099 ACTCCACTAAACCACCCCAACC
1 ACTCCACTAAACCACTCCAACC
22504121 ACTCCACT
1 ACTCCACT
22504129 TGCCTACAAA
Statistics
Matches: 98, Mismatches: 11, Indels: 26
0.73 0.08 0.19
Matches are distributed among these distances:
18 7 0.07
19 3 0.03
20 1 0.01
21 6 0.06
22 53 0.54
25 2 0.02
26 19 0.19
27 7 0.07
ACGTcount: A:0.36, C:0.49, G:0.01, T:0.14
Consensus pattern (22 bp):
ACTCCACTAAACCACTCCAACC
Found at i:22504086 original size:48 final size:44
Alignment explanation
Indices: 22504003--22504122 Score: 143
Period size: 48 Copynumber: 2.6 Consensus size: 44
22503993 AAACCACTCC
* *
22504003 AACCACTCCACTAAACCACTCCAACCACTCTAACCACTCC-ACTA
1 AACCACTCCACTAAACCACTCCAACCACCCCAACCAC-CCTACTA
* *
22504047 AGCCACTACACTAAACCACTCCACTAAACCACCCCAACCACCCTACTA
1 AACCACTCCACTAAACCACT-C-C--AACCACCCCAACCACCCTACTA
*
22504095 AACCACTCCACTAAACCACCCCAACCAC
1 AACCACTCCACTAAACCACTCCAACCAC
22504123 TCCACTTGCC
Statistics
Matches: 64, Mismatches: 7, Indels: 10
0.79 0.09 0.12
Matches are distributed among these distances:
44 24 0.38
45 1 0.02
46 2 0.03
47 3 0.05
48 34 0.53
ACGTcount: A:0.38, C:0.49, G:0.01, T:0.12
Consensus pattern (44 bp):
AACCACTCCACTAAACCACTCCAACCACCCCAACCACCCTACTA
Found at i:22504532 original size:19 final size:18
Alignment explanation
Indices: 22504495--22504536 Score: 57
Period size: 19 Copynumber: 2.3 Consensus size: 18
22504485 GGAGAGAGTG
*
22504495 TTATTTTTAATATTGTTA
1 TTATTTTTAATATTATTA
*
22504513 TTATTTTCTATTATTATTA
1 TTATTTT-TAATATTATTA
22504532 TTATT
1 TTATT
22504537 ACTAATACCA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 7 0.33
19 14 0.67
ACGTcount: A:0.26, C:0.02, G:0.02, T:0.69
Consensus pattern (18 bp):
TTATTTTTAATATTATTA
Found at i:22504917 original size:17 final size:18
Alignment explanation
Indices: 22504895--22504928 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
22504885 TCTTATTATA
22504895 GTTATTGATT-TTTATTT
1 GTTATTGATTCTTTATTT
*
22504912 GTTATTTATTCTTTATT
1 GTTATTGATTCTTTATT
22504929 ATCTCGTTCA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.18, C:0.03, G:0.09, T:0.71
Consensus pattern (18 bp):
GTTATTGATTCTTTATTT
Found at i:22507408 original size:19 final size:19
Alignment explanation
Indices: 22507384--22507430 Score: 69
Period size: 19 Copynumber: 2.5 Consensus size: 19
22507374 ACTCCTTTCT
*
22507384 TTTGCATT-CATTCCATACA
1 TTTGCATTACATTACA-ACA
22507403 TTTGCATTACATTACAACA
1 TTTGCATTACATTACAACA
22507422 TTTGCATTA
1 TTTGCATTA
22507431 AACTTTCACT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
19 20 0.77
20 6 0.23
ACGTcount: A:0.30, C:0.21, G:0.06, T:0.43
Consensus pattern (19 bp):
TTTGCATTACATTACAACA
Found at i:22512597 original size:205 final size:205
Alignment explanation
Indices: 22512094--22512576 Score: 804
Period size: 205 Copynumber: 2.4 Consensus size: 205
22512084 CGGAGAGCTG
* *
22512094 ATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACATTAAAGCAAATCTAAGATGATTTGGCT
1 ATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTAAAGCAAATCTAAGATGATTTGGCA
*
22512159 TCTCTGTATTGTCAGAGAACAAATCGAAGTCTAGCATCTCCACTTCGACGGAAGGCAGACACATA
66 TCTCTGTATTGTCAGAGAACAAATTGAAGTCTAGCATCTCCACTTCGACGGAAGGCAGACACATA
* * * *
22512224 GCAGATCCAACCTTCAGATGTTTATGCTGAAGTAGATCCAAGATGGTTTGGCATCCTTGTGCTTA
131 GCAGATCCAACCTTCAAATGTTTATACTGAAGCAGATCCAAGATGGTTTGCCATCCTTGTGCTTA
22512289 CAAGGAGCAA
196 CAAGGAGCAA
* *
22512299 ATCGAAGACATAGCTGATTTGGCTTTCATGTGCTTACGTTAAAGCAAATCTAAGATGATTTGGCA
1 ATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTAAAGCAAATCTAAGATGATTTGGCA
* * * *
22512364 TCTCTGTATTGTCAGAGAACAAATTGAAGTCTGGCATCTCCACTTCGATGGAGGGTAGACACATA
66 TCTCTGTATTGTCAGAGAACAAATTGAAGTCTAGCATCTCCACTTCGACGGAAGGCAGACACATA
*
22512429 GCAGATCCAACCTTCAAATGTTTATACTGAAGCAGATCTAAGATGGTTTGCCATCCTTGTGCTTA
131 GCAGATCCAACCTTCAAATGTTTATACTGAAGCAGATCCAAGATGGTTTGCCATCCTTGTGCTTA
22512494 CAAGGAGCAA
196 CAAGGAGCAA
* * * *
22512504 ATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCCAAGATAATTTGGCG
1 ATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTAAAGCAAATCTAAGATGATTTGGCA
22512569 TCTCTGTA
66 TCTCTGTA
22512577 GCGGCGGAGA
Statistics
Matches: 258, Mismatches: 20, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
205 258 1.00
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.29
Consensus pattern (205 bp):
ATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTAAAGCAAATCTAAGATGATTTGGCA
TCTCTGTATTGTCAGAGAACAAATTGAAGTCTAGCATCTCCACTTCGACGGAAGGCAGACACATA
GCAGATCCAACCTTCAAATGTTTATACTGAAGCAGATCCAAGATGGTTTGCCATCCTTGTGCTTA
CAAGGAGCAA
Found at i:22512636 original size:44 final size:44
Alignment explanation
Indices: 22512588--22513346 Score: 577
Period size: 44 Copynumber: 17.2 Consensus size: 44
22512578 CGGCGGAGAG
* * *
22512588 CAGATTGAAGATTGTAGATTTGGCATCCCTGTGTTTATAGGGAA
1 CAGATCGAAGATAGTAGATTTGGCATCCCTGTGCTTATAGGGAA
* * * *
22512632 CAGATCGAAGATAGTAGATCTGACATTCCTGTGCTTATAGTGAAA
1 CAGATCGAAGATAGTAGATTTGGCATCCCTGTGCTTATAG-GGAA
* *
22512677 TAGATCGAAGAT-TTCAGCA--TGGCATCCCTGTGCTTATAGGGAA
1 CAGATCGAAGATAGT-AG-ATTTGGCATCCCTGTGCTTATAGGGAA
* * * *
22512720 CA-AGTTGAAAACAGCAGATTTGGCATCCCTGTGCTTATAGGGAA
1 CAGA-TCGAAGATAGTAGATTTGGCATCCCTGTGCTTATAGGGAA
* * * * * * *
22512764 CAGATCGAAAATAGCAGATCTGACATTCCTGTGCTTACAGTGAA
1 CAGATCGAAGATAGTAGATTTGGCATCCCTGTGCTTATAGGGAA
* **
22512808 GCAGATCGAAGAT-TTCA-ACATGGCATCCCTGTGCTTATAGGGAA
1 -CAGATCGAAGATAGT-AGATTTGGCATCCCTGTGCTTATAGGGAA
* * * *
22512852 CA-AGTTGAAAACAGCAGATTTGGCATCCCTGTGCTTATAGGGAA
1 CAGA-TCGAAGATAGTAGATTTGGCATCCCTGTGCTTATAGGGAA
* * * * *
22512896 CAGATCGAAGATAGTAGATCTGACATTCCTGTGCTTACAGTGAA
1 CAGATCGAAGATAGTAGATTTGGCATCCCTGTGCTTATAGGGAA
*
22512940 GCAGATCGAAGAT-TTCAGCA--TGGCATCCCTGTGCTTATAGGGAA
1 -CAGATCGAAGATAGT-AG-ATTTGGCATCCCTGTGCTTATAGGGAA
* *
22512984 CACG-TTGAAGATAGCAGATTTGGCATCCCTGTGCTTATAGGGAA
1 CA-GATCGAAGATAGTAGATTTGGCATCCCTGTGCTTATAGGGAA
* * * * * *
22513028 CAGATTGAAGATAGTAGATCTGACATTCCTGTGCTTACAGTGAA
1 CAGATCGAAGATAGTAGATTTGGCATCCCTGTGCTTATAGGGAA
** *
22513072 GCAGATCGAAGATTTTAGCA--TGGCATCCCTGTGTTTATAGGGAA
1 -CAGATCGAAGATAGTAG-ATTTGGCATCCCTGTGCTTATAGGGAA
* * * *
22513116 CA-AGTTGAAAACAGCAGATTTGGCATCCCTGTGCTTATAGGGAA
1 CAGA-TCGAAGATAGTAGATTTGGCATCCCTGTGCTTATAGGGAA
* * * * * **
22513160 CAGATCGAAGATAGCATATCTGACATTCCTGTGCTT-CCGGTGAA
1 CAGATCGAAGATAGTAGATTTGGCATCCCTGTGCTTATAGG-GAA
* * *
22513204 GCAGATCGAAGAT-TTCAGCA--TGGAATCCCTGTTCTTATAGGGAA
1 -CAGATCGAAGATAGT-AG-ATTTGGCATCCCTGTGCTTATAGGGAA
* * * * * *
22513248 CA-AGTTGAAGATAGCAGATTCGGCATCCCTATGTTTATAGGAAA
1 CAGA-TCGAAGATAGTAGATTTGGCATCCCTGTGCTTATAGGGAA
* * * * *
22513292 CA-AGTTGAAGACAGCAGATTTGGCATCCCTGTGTTTATGGGGAA
1 CAGA-TCGAAGATAGTAGATTTGGCATCCCTGTGCTTATAGGGAA
22513336 CAGATCGAAGA
1 CAGATCGAAGA
22513347 AGCAGATCAA
Statistics
Matches: 565, Mismatches: 112, Indels: 76
0.75 0.15 0.10
Matches are distributed among these distances:
42 8 0.01
43 53 0.09
44 425 0.75
45 75 0.13
46 4 0.01
ACGTcount: A:0.30, C:0.18, G:0.25, T:0.27
Consensus pattern (44 bp):
CAGATCGAAGATAGTAGATTTGGCATCCCTGTGCTTATAGGGAA
Found at i:22512830 original size:132 final size:132
Alignment explanation
Indices: 22512603--22513293 Score: 1157
Period size: 132 Copynumber: 5.2 Consensus size: 132
22512593 TGAAGATTGT
*
22512603 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGTAGATCTGACATTCCTGTGCTT
1 AGATTTGGCATCCCTGTGCTTATAGGGAACAGATCGAAGATAGTAGATCTGACATTCCTGTGCTT
* **
22512668 ATAGTGAAATAGATCGAAGATTTCAGCATGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACA
66 ACAGTGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACA
22512733 GC
131 GC
* *
22512735 AGATTTGGCATCCCTGTGCTTATAGGGAACAGATCGAAAATAGCAGATCTGACATTCCTGTGCTT
1 AGATTTGGCATCCCTGTGCTTATAGGGAACAGATCGAAGATAGTAGATCTGACATTCCTGTGCTT
*
22512800 ACAGTGAAGCAGATCGAAGATTTCAACATGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACA
66 ACAGTGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACA
22512865 GC
131 GC
22512867 AGATTTGGCATCCCTGTGCTTATAGGGAACAGATCGAAGATAGTAGATCTGACATTCCTGTGCTT
1 AGATTTGGCATCCCTGTGCTTATAGGGAACAGATCGAAGATAGTAGATCTGACATTCCTGTGCTT
* * *
22512932 ACAGTGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGCTTATAGGGAACACGTTGAAGATA
66 ACAGTGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACA
22512997 GC
131 GC
*
22512999 AGATTTGGCATCCCTGTGCTTATAGGGAACAGATTGAAGATAGTAGATCTGACATTCCTGTGCTT
1 AGATTTGGCATCCCTGTGCTTATAGGGAACAGATCGAAGATAGTAGATCTGACATTCCTGTGCTT
* *
22513064 ACAGTGAAGCAGATCGAAGATTTTAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAAACA
66 ACAGTGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACA
22513129 GC
131 GC
* *
22513131 AGATTTGGCATCCCTGTGCTTATAGGGAACAGATCGAAGATAGCATATCTGACATTCCTGTGCTT
1 AGATTTGGCATCCCTGTGCTTATAGGGAACAGATCGAAGATAGTAGATCTGACATTCCTGTGCTT
* * * * * *
22513196 CCGGTGAAGCAGATCGAAGATTTCAGCATGGAATCCCTGTTCTTATAGGGAACAAGTTGAAGATA
66 ACAGTGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACA
22513261 GC
131 GC
* * * *
22513263 AGATTCGGCATCCCTATGTTTATAGGAAACA
1 AGATTTGGCATCCCTGTGCTTATAGGGAACA
22513294 AGTTGAAGAC
Statistics
Matches: 525, Mismatches: 34, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
132 525 1.00
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.27
Consensus pattern (132 bp):
AGATTTGGCATCCCTGTGCTTATAGGGAACAGATCGAAGATAGTAGATCTGACATTCCTGTGCTT
ACAGTGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACA
GC
Found at i:22513628 original size:13 final size:13
Alignment explanation
Indices: 22513610--22513753 Score: 96
Period size: 13 Copynumber: 12.6 Consensus size: 13
22513600 AAATATCTTT
22513610 ACTCCACTAAACC
1 ACTCCACTAAACC
22513623 ACT-C-C--AACC
1 ACTCCACTAAACC
22513632 ACT-C-C-AA-CC
1 ACTCCACTAAACC
22513641 ACTCCACTAAACC
1 ACTCCACTAAACC
*
22513654 TCT-C-C--AACC
1 ACTCCACTAAACC
*
22513663 ACTCTACTAAACC
1 ACTCCACTAAACC
*
22513676 ACTACACTAAACC
1 ACTCCACTAAACC
*
22513689 ATTCCACTAAACC
1 ACTCCACTAAACC
22513702 AC-CC-C--AACC
1 ACTCCACTAAACC
22513711 AC-CCTACTAAACC
1 ACTCC-ACTAAACC
22513724 ACTCCACTAAACC
1 ACTCCACTAAACC
22513737 AC-CC-C--AACC
1 ACTCCACTAAACC
22513746 ACTCCACT
1 ACTCCACT
22513754 TGCCTACAAA
Statistics
Matches: 106, Mismatches: 8, Indels: 35
0.71 0.05 0.23
Matches are distributed among these distances:
9 34 0.32
10 4 0.04
11 8 0.08
12 8 0.08
13 50 0.47
14 2 0.02
ACGTcount: A:0.36, C:0.49, G:0.00, T:0.15
Consensus pattern (13 bp):
ACTCCACTAAACC
Found at i:22513653 original size:22 final size:22
Alignment explanation
Indices: 22513628--22513729 Score: 116
Period size: 22 Copynumber: 4.5 Consensus size: 22
22513618 AAACCACTCC
22513628 AACCACTCCAACCACTCCACTA
1 AACCACTCCAACCACTCCACTA
* *
22513650 AACCTCTCCAACCACTCTACTA
1 AACCACTCCAACCACTCCACTA
*
22513672 AACCACTACACTAAACCATTCCACTA
1 AACCACT-C-C--AACCACTCCACTA
*
22513698 AACCACCCCAACCAC-CCTACTA
1 AACCACTCCAACCACTCC-ACTA
22513720 AACCACTCCA
1 AACCACTCCA
22513730 CTAAACCACC
Statistics
Matches: 67, Mismatches: 8, Indels: 10
0.79 0.09 0.12
Matches are distributed among these distances:
21 2 0.03
22 44 0.66
23 1 0.01
24 2 0.03
25 1 0.01
26 17 0.25
ACGTcount: A:0.37, C:0.47, G:0.00, T:0.16
Consensus pattern (22 bp):
AACCACTCCAACCACTCCACTA
Found at i:22513662 original size:9 final size:9
Alignment explanation
Indices: 22513619--22513646 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
22513609 TACTCCACTA
22513619 AACCACTCC
1 AACCACTCC
22513628 AACCACTCC
1 AACCACTCC
22513637 AACCACTCC
1 AACCACTCC
22513646 A
1 A
22513647 CTAAACCTCT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.36, C:0.54, G:0.00, T:0.11
Consensus pattern (9 bp):
AACCACTCC
Found at i:22513684 original size:35 final size:34
Alignment explanation
Indices: 22513610--22513689 Score: 94
Period size: 31 Copynumber: 2.4 Consensus size: 34
22513600 AAATATCTTT
*
22513610 ACTCCACTAAACCACTCCAACCACTC-C--AACC
1 ACTCCACTAAACCACCCCAACCACTCACTAAACC
* *
22513641 ACTCCACTAAACCTCTCCAACCACTCTACTAAACC
1 ACTCCACTAAACCACCCCAACCACTC-ACTAAACC
*
22513676 ACTACACTAAACCA
1 ACTCCACTAAACCA
22513690 TTCCACTAAA
Statistics
Matches: 42, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
31 25 0.60
33 1 0.02
35 16 0.38
ACGTcount: A:0.38, C:0.46, G:0.00, T:0.16
Consensus pattern (34 bp):
ACTCCACTAAACCACCCCAACCACTCACTAAACC
Found at i:22513695 original size:48 final size:48
Alignment explanation
Indices: 22513637--22513738 Score: 159
Period size: 48 Copynumber: 2.1 Consensus size: 48
22513627 CAACCACTCC
* * *
22513637 AACCACTCCACTAAACCTCTCCAACCACTCTACTAAACCACTACACTA
1 AACCACTCCACTAAACCACCCCAACCACCCTACTAAACCACTACACTA
* *
22513685 AACCATTCCACTAAACCACCCCAACCACCCTACTAAACCACTCCACTA
1 AACCACTCCACTAAACCACCCCAACCACCCTACTAAACCACTACACTA
22513733 AACCAC
1 AACCAC
22513739 CCCAACCACT
Statistics
Matches: 48, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
48 48 1.00
ACGTcount: A:0.38, C:0.46, G:0.00, T:0.16
Consensus pattern (48 bp):
AACCACTCCACTAAACCACCCCAACCACCCTACTAAACCACTACACTA
Found at i:22513720 original size:35 final size:35
Alignment explanation
Indices: 22513681--22513747 Score: 125
Period size: 35 Copynumber: 1.9 Consensus size: 35
22513671 AAACCACTAC
*
22513681 ACTAAACCATTCCACTAAACCACCCCAACCACCCT
1 ACTAAACCACTCCACTAAACCACCCCAACCACCCT
22513716 ACTAAACCACTCCACTAAACCACCCCAACCAC
1 ACTAAACCACTCCACTAAACCACCCCAACCAC
22513748 TCCACTTGCC
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 31 1.00
ACGTcount: A:0.39, C:0.49, G:0.00, T:0.12
Consensus pattern (35 bp):
ACTAAACCACTCCACTAAACCACCCCAACCACCCT
Found at i:22514164 original size:3 final size:3
Alignment explanation
Indices: 22514132--22514264 Score: 51
Period size: 3 Copynumber: 44.3 Consensus size: 3
22514122 GGAGAGAGTG
* * * * *
22514132 TTA TTT TTA ATA TTG TTA TTA TTT TCTA TTA TTA TTA TTA TTA CTA
1 TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA TTA TTA
* * * * * * *
22514178 ATA CTA CTA TTA TCA TCA TTA TTA CTA TTA -TA TTA -TA ATA CCTT-
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA --TTA
* * *
22514222 TTCA TTA TTA TTA CTA TTG TGT- TT- TTA CTA TTA TTA TTA TTA T
1 TT-A TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA TTA TTA TTA T
22514265 ATTTCCCTTT
Statistics
Matches: 99, Mismatches: 22, Indels: 18
0.71 0.16 0.13
Matches are distributed among these distances:
2 9 0.09
3 84 0.85
4 5 0.05
5 1 0.01
ACGTcount: A:0.30, C:0.09, G:0.02, T:0.59
Consensus pattern (3 bp):
TTA
Found at i:22514169 original size:19 final size:18
Alignment explanation
Indices: 22514132--22514173 Score: 57
Period size: 19 Copynumber: 2.3 Consensus size: 18
22514122 GGAGAGAGTG
*
22514132 TTATTTTTAATATTGTTA
1 TTATTTTTAATATTATTA
*
22514150 TTATTTTCTATTATTATTA
1 TTATTTT-TAATATTATTA
22514169 TTATT
1 TTATT
22514174 ACTAATACTA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 7 0.33
19 14 0.67
ACGTcount: A:0.26, C:0.02, G:0.02, T:0.69
Consensus pattern (18 bp):
TTATTTTTAATATTATTA
Found at i:22514232 original size:33 final size:38
Alignment explanation
Indices: 22514158--22514239 Score: 102
Period size: 33 Copynumber: 2.3 Consensus size: 38
22514148 TATTATTTTC
*
22514158 TATTATTATTATTATTACTAATACTACTATTATCATCAT
1 TATTACTATTATTATTACTAATAC-ACTATTATCATCAT
*
22514197 TATTACTATTA-TATTA-TAATAC-CT-TT-TCATTAT
1 TATTACTATTATTATTACTAATACACTATTATCATCAT
22514230 TATTACTATT
1 TATTACTATT
22514240 GTGTTTTTAC
Statistics
Matches: 41, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
33 16 0.39
34 2 0.05
35 2 0.05
37 6 0.15
38 5 0.12
39 10 0.24
ACGTcount: A:0.34, C:0.12, G:0.00, T:0.54
Consensus pattern (38 bp):
TATTACTATTATTATTACTAATACACTATTATCATCAT
Found at i:22515979 original size:210 final size:210
Alignment explanation
Indices: 22515613--22516025 Score: 655
Period size: 210 Copynumber: 2.0 Consensus size: 210
22515603 CTACGAACTC
* * *
22515613 AGTTCCCCCACTCACCCATTCACTCATTCACAAAGACAACAACCCCACCACGATCAGAGACCTCC
1 AGTTCCCCCACTCAACCAATCACTCATTCACAAACACAACAACCCCACCACGATCAGAGACCTCC
* *
22515678 AACATCGCTACTCATTTGTCTCCAATATTCAGCCTTCAGTCTCATCGTACATTGTAATAACAACT
66 AACATCGCTACTCATTTGTCTCCAACATTCAGCCTTCAGTCTCATCGCACATTGTAATAACAACT
* *
22515743 AGTTAGTAGTTATTAAAAAAACTACTTATTATAATAATGTATACAATAATTTTACCACCTGACAC
131 AGTTAGTAGTTACTAAAAAAACTACTTATTATAATAATGTATACAATAATTTCACCACCTGACAC
22515808 ACTTTCACCAAGATT
196 ACTTTCACCAAGATT
* * * *
22515823 AGTTCCCCCACTCAACCAATCACTCATTCACAAACACAACACCCCCACCATGCTCAGAGACCTCT
1 AGTTCCCCCACTCAACCAATCACTCATTCACAAACACAACAACCCCACCACGATCAGAGACCTCC
* * *
22515888 AGCATCGCTGCTTATTTGTCTCCAACATTCAGCCTTCAGTCTCATCGCACATTGTAATAACAACT
66 AACATCGCTACTCATTTGTCTCCAACATTCAGCCTTCAGTCTCATCGCACATTGTAATAACAACT
* * * * *
22515953 AGTTTGTAGTTACTAAAAACACTACTTATTTTGATAATGTATACAATAATTTCACCACCTGACGC
131 AGTTAGTAGTTACTAAAAAAACTACTTATTATAATAATGTATACAATAATTTCACCACCTGACAC
22516018 ACTTTCAC
196 ACTTTCAC
22516026 TGCCAATATT
Statistics
Matches: 184, Mismatches: 19, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
210 184 1.00
ACGTcount: A:0.33, C:0.30, G:0.09, T:0.29
Consensus pattern (210 bp):
AGTTCCCCCACTCAACCAATCACTCATTCACAAACACAACAACCCCACCACGATCAGAGACCTCC
AACATCGCTACTCATTTGTCTCCAACATTCAGCCTTCAGTCTCATCGCACATTGTAATAACAACT
AGTTAGTAGTTACTAAAAAAACTACTTATTATAATAATGTATACAATAATTTCACCACCTGACAC
ACTTTCACCAAGATT
Found at i:22516854 original size:210 final size:210
Alignment explanation
Indices: 22516482--22516882 Score: 590
Period size: 210 Copynumber: 1.9 Consensus size: 210
22516472 TTAAATTCTG
* * * * * * * * *
22516482 CAACCTCAGTTCCCCCACTCACCCATTCACTCATTCACAAAGAGAACAACCCCACCATGCTCAGA
1 CAACCACAGTTCCCCCACACAACCATTCACCCAATAACAAAGACAACAACCCCACCACGCTCACA
* ** *
22516547 AACCTCCAGCATCGCTGTTCATTTGTCTCCAACAATCAGCCTTCAGTCTCAGTGCACATTGTAAT
66 AACCTCCAGCATCACTACTCATTTGTCCCCAACAATCAGCCTTCAGTCTCAGTGCACATTGTAAT
*
22516612 AACAACAAGTTAGTAGTTACTATAAAAACTACTTATTATGATAATGCATACAATAATTTTAGAAC
131 AACAACAAGTTAGCAGTTACTATAAAAACTACTTATTATGATAATGCATACAATAATTTTAGAAC
22516677 TTGACACACTTACAC
196 TTGACACACTTACAC
* *
22516692 CAACCACAGTTCCCCTACACAACCATTCACCCAATAACAAAGACAACATCCCCACCACGCTCACA
1 CAACCACAGTTCCCCCACACAACCATTCACCCAATAACAAAGACAACAACCCCACCACGCTCACA
* * *
22516757 GACCTCCAGCGTCACTACTCATTTGTCCCCAACATTCAGCCTTCAGTCTCA-TCGCACATTGTAA
66 AACCTCCAGCATCACTACTCATTTGTCCCCAACAATCAGCCTTCAGTCTCAGT-GCACATTGTAA
*
22516821 TAACAACTAGTTAGCAGTTACTA-AAATAACTACTTATTATGATAATGCATACAATAATTTTA
130 TAACAACAAGTTAGCAGTTACTATAAA-AACTACTTATTATGATAATGCATACAATAATTTTA
22516883 CCACCTAACA
Statistics
Matches: 169, Mismatches: 20, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
209 4 0.02
210 165 0.98
ACGTcount: A:0.35, C:0.30, G:0.09, T:0.26
Consensus pattern (210 bp):
CAACCACAGTTCCCCCACACAACCATTCACCCAATAACAAAGACAACAACCCCACCACGCTCACA
AACCTCCAGCATCACTACTCATTTGTCCCCAACAATCAGCCTTCAGTCTCAGTGCACATTGTAAT
AACAACAAGTTAGCAGTTACTATAAAAACTACTTATTATGATAATGCATACAATAATTTTAGAAC
TTGACACACTTACAC
Found at i:22517109 original size:876 final size:873
Alignment explanation
Indices: 22515403--22517563 Score: 2928
Period size: 876 Copynumber: 2.5 Consensus size: 873
22515393 TGGTTACGAC
22515403 AATCCCTAATCCTTAAAATTTTCCTTATTTATTGCTTCTTTGGTGTTGCCACCATTGTTGCTTTT
1 AATCCCTAATCCTT-AAATTTTCCTTATTTATTGCTTCTTTGGTGTTGCCACCATTGTTGC-TTT
* * *
22515468 TTTCCTTTTGCTGCTTTTCATTTGTTCCGTTGTCATTCCCGCCATTGTTGCTTTTTTACCTTTTA
64 CTTCCTTTTGCTGCTTTTCGTTTGTTTCGTTGTCATTCCCGCCATTGTTGCTTTTTTACCTTTTA
* * * ** **
22515533 GTTACTTTCTACTTCTTCGCCAGTTGTTAGTCGCCGCTGTTACTTTTCACCACTCTACCTTCTGC
129 CTTAGTTTCTACTTCTTCGCCAGTTGTTAGTC-CCGCTGCTACTTTTCACTTCTCTACCTTCTTT
*
22515598 AAATTCTACGAA-CTCAGTTCCCCCACTCACCCATTCACTCATTCACAAAGACAACAACCCCACC
193 AAATTCTGC-AACCTCAGTTCCCCCACTCACCCATTCACTCATTCACAAAGACAACAACCCCACC
* * * * *
22515662 ACGATCAGAGACCTCCAACATCGCTACTCATTTGTCTCCAATATTCAGCCTTCAGTCTCATCGTA
257 ACGCTCAGAGACCTCCAGCATCGCTGCTCATTTGTCTCCAACATTCAGCCTTCAGTCTCATCGCA
* * *
22515727 CATTGTAATAACAACTAGTTAGTAGTTATTAAAAAAACTACTTATTATAATAATGTATACAATAA
322 CATTGTAATAACAACTAGTTAGTAGTTACT-AAAAAACTACTTATTATGATAATGCATACAATAA
* * * * * * * *
22515792 TTTTACCACCTGACACACTTTCACCAAGATTAGTTCCCCCACTCAACCAATCACTCATTCACAAA
386 TTTTACAACCTGACACACTTACACCAACATCAGTTCCCCCACACAACCAATCACCCAATAACAAA
* * * * * * *
22515857 CACAACACCCCCACCATGCTCAGAGACCTCTAGCATCGCTGCTTATTTGTCTCCAACATTCAGCC
451 CACAACACCCCCACCACGCTCACAGACCTCCAGCATCACTACTCATTTGTCCCCAACATTCAGCC
* * *
22515922 TTCAGTCTCATCGCACATTGTAATAACAACTAGTTTGTAGTTACTAAAAACACTACTTATTTTGA
516 TTCAGTCTCATCGCACATTGTAATAACAACTAGTTAGCAGTTACTAAAAACACTACTTATTATGA
* * * *
22515987 TAATGTATACAATAATTTCACCACCTGACGCACTTTCACTGCCAATATTCTTTACTGTGGAATAT
581 TAATGCATACAATAATTTCACCACCTAACACACTTTCAATGCCAATATTCTTTACTGTGGAATAT
* * *
22516052 AAAATGATCTCATTTTTCTTGGTTTTATAGAATTTGTTTCATAGAGAATTATTGTATGTATTGCA
646 AAAATAATCTCATTTTTCTCGGTTTTATAGAATTTGTTTCATAGAGAATTATTGTATATATTGCA
* * * * *
22516117 CTACCAGTCCAATTTAAAAATGGGTCAAGCTTCGAGCTAGGATTTTTCAACCCAAGCCCAAACCA
711 CTACCAGCCCAATTTAAAAATGGGCCAAGCTTCAAGCAAAGATTTTTCAACCCAAGCCCAAACCA
* * *
22516182 ATTTTATTAACCTAAAAGTTTTACCCTTGTTCCCACTTCCCAGTAGACCCAGTCTTGATATACCC
776 ATTTTATTAACCTAAAAGATTGACCCTTGTTCCCACTTCCCAGCAGACCCAGTCTTGATATACCC
*
22516247 TTTTCCCTTTCCAA-CCCGTATTTTCCCTTCCTT
841 TTTTCCCTTTCCAATCCC-TATTCTCCCTTCCTT
**
22516280 AATCCCTAATCCTTAAATTTTTCCTTATTTATTGCTTCTTTGGTGTTGCCACTGTTGTTGCTTCT
1 AATCCCTAATCCTTAAA-TTTTCCTTATTTATTGCTTCTTTGGTGTTGCCACCATTGTTGCTT-T
* * * * *
22516345 CTGCCTTTTGCTGCTTTTCGTTT-TTTCGTTGTTATTACCGTCATTGTTGCTTTTTTACCTTCTA
64 CTTCCTTTTGCTGCTTTTCGTTTGTTTCGTTGTCATTCCCGCCATTGTTGCTTTTTTACCTTTTA
* * * *
22516409 TTTAGTTTCTACTTCTTCGCCAGTCGTTCGTCCCAGTTGCTA-TTTATCACTTCTCTACCTTCTT
129 CTTAGTTTCTACTTCTTCGCCAGTTGTTAGTCCC-GCTGCTACTTT-TCACTTCTCTACCTTCTT
*
22516473 TAAATTCTGCAACCTCAGTTCCCCCACTCACCCATTCACTCATTCACAAAGAGAACAACCCCACC
192 TAAATTCTGCAACCTCAGTTCCCCCACTCACCCATTCACTCATTCACAAAGACAACAACCCCACC
* * * *
22516538 ATGCTCAGAAACCTCCAGCATCGCTGTTCATTTGTCTCCAACAATCAGCCTTCAGTCTCAGT-GC
257 ACGCTCAGAGACCTCCAGCATCGCTGCTCATTTGTCTCCAACATTCAGCCTTCAGTCTCA-TCGC
*
22516602 ACATTGTAATAACAACAAGTTAGTAGTTACTATAAAAACTACTTATTATGATAATGCATACAATA
321 ACATTGTAATAACAACTAGTTAGTAGTTACTA-AAAAACTACTTATTATGATAATGCATACAATA
* * * *
22516667 ATTTTAGAACTTGACACACTTACACCAACCA-CAGTTCCCCTACACAACCATTCACCCAATAACA
385 ATTTTACAACCTGACACACTTACACCAA-CATCAGTTCCCCCACACAACCAATCACCCAATAACA
* * *
22516731 AAGACAACATCCCCACCACGCTCACAGACCTCCAGCGTCACTACTCATTTGTCCCCAACATTCAG
449 AACACAACACCCCCACCACGCTCACAGACCTCCAGCATCACTACTCATTTGTCCCCAACATTCAG
22516796 CCTTCAGTCTCATCGCACATTGTAATAACAACTAGTTAGCAGTTACTAAAATA-ACTACTTATTA
514 CCTTCAGTCTCATCGCACATTGTAATAACAACTAGTTAGCAGTTACTAAAA-ACACTACTTATTA
*
22516860 TGATAATGCATACAATAATTTTACCACCTAACACACTTTCAATGCCAAT-TATCTTTACTGTGGA
578 TGATAATGCATACAATAATTTCACCACCTAACACACTTTCAATGCCAATAT-TCTTTACTGTGGA
22516924 ATATAAAATAATCTCATTTTTCTCGGTTTTATAGAATTT-TTCTCATAGAG-ATTCATTGTATAT
642 ATATAAAATAATCTCATTTTTCTCGGTTTTATAGAATTTGTT-TCATAGAGAATT-ATTGTATAT
* * * ** * *
22516987 ATTGTATTACTAGCCCGTTTTAAAAATGGGCCGAGCTTCAAGCAAAGATTTTTCAA-CCTAGTCC
705 ATTGCACTACCAGCCCAATTTAAAAATGGGCCAAGCTTCAAGCAAAGATTTTTCAACCCAAG-CC
* * * * *
22517051 C-AGCTCAATTTTATTAGCTTAGAAA-ATTGACCCTTGTTTCCACTTCCCAGCAGACCCAGTGTT
769 CAAAC-CAATTTTATTAACCTA-AAAGATTGACCCTTGTTCCCACTTCCCAGCAGACCCAGTCTT
*
22517114 GATATTCCCTTTTCCCTTTCCAATCCCTATTCTCCCTTCCTT
832 GATATACCCTTTTCCCTTTCCAATCCCTATTCTCCCTTCCTT
* * * *
22517156 AATCCCTAATCCTTAGATTTTCCTTATTTACTGCTTCTTTAGTGTTACCACCATTGTTGCTTTGC
1 AATCCCTAATCCTTAAATTTTCCTTATTTATTGCTTCTTTGGTGTTGCCACCATTGTTGCTTT-C
* * * * *
22517221 TTCCTTTTGCTACTTTTCGTTTGTTTCATTGTCATTCCCGCCATTGTTCCTCTTTTACCTTTTGC
65 TTCCTTTTGCTGCTTTTCGTTTGTTTCGTTGTCATTCCCGCCATTGTTGCTTTTTTACCTTTTAC
* * * ** * *
22517286 TTAGTTTCTGCTTCTTTGCCAGTTGTTAATTGTCGCTGCTACGTTTCGCTTCTCTACC-TCTTAT
130 TTAGTTTCTACTTCTTCGCCAGTTGTT-AGTCCCGCTGCTACTTTTCACTTCTCTACCTTCTT-T
** * * * * *
22517350 AAATTCTGCAACCTCAAATCCCCCACTCAACCTTTCACTCATGCACAAAGACAGCACCCCCACCA
193 AAATTCTGCAACCTCAGTTCCCCCACTCACCCATTCACTCATTCACAAAGACAACAACCCCACCA
* * *
22517415 CACTCAGAGTCCTCCAGCATCGTTGCTCATTTGTCTCCAACATTCAGCCTTCAGTCTCATCGCAC
258 CGCTCAGAGACCTCCAGCATCGCTGCTCATTTGTCTCCAACATTCAGCCTTCAGTCTCATCGCAC
*
22517480 ATTGTAATAACAACTAGTTAGTAGTTACTAAAATAACTACTTATTATGATAATTCATACAATAAT
323 ATTGTAATAACAACTAGTTAGTAGTTACTAAAA-AACTACTTATTATGATAATGCATACAATAAT
* *
22517545 TTTACCACCTAACACACTT
387 TTTACAACCTGACACACTT
22517564 TCACTGCCAA
Statistics
Matches: 1123, Mismatches: 138, Indels: 47
0.86 0.11 0.04
Matches are distributed among these distances:
874 1 0.00
875 89 0.08
876 944 0.84
877 89 0.08
ACGTcount: A:0.26, C:0.27, G:0.11, T:0.36
Consensus pattern (873 bp):
AATCCCTAATCCTTAAATTTTCCTTATTTATTGCTTCTTTGGTGTTGCCACCATTGTTGCTTTCT
TCCTTTTGCTGCTTTTCGTTTGTTTCGTTGTCATTCCCGCCATTGTTGCTTTTTTACCTTTTACT
TAGTTTCTACTTCTTCGCCAGTTGTTAGTCCCGCTGCTACTTTTCACTTCTCTACCTTCTTTAAA
TTCTGCAACCTCAGTTCCCCCACTCACCCATTCACTCATTCACAAAGACAACAACCCCACCACGC
TCAGAGACCTCCAGCATCGCTGCTCATTTGTCTCCAACATTCAGCCTTCAGTCTCATCGCACATT
GTAATAACAACTAGTTAGTAGTTACTAAAAAACTACTTATTATGATAATGCATACAATAATTTTA
CAACCTGACACACTTACACCAACATCAGTTCCCCCACACAACCAATCACCCAATAACAAACACAA
CACCCCCACCACGCTCACAGACCTCCAGCATCACTACTCATTTGTCCCCAACATTCAGCCTTCAG
TCTCATCGCACATTGTAATAACAACTAGTTAGCAGTTACTAAAAACACTACTTATTATGATAATG
CATACAATAATTTCACCACCTAACACACTTTCAATGCCAATATTCTTTACTGTGGAATATAAAAT
AATCTCATTTTTCTCGGTTTTATAGAATTTGTTTCATAGAGAATTATTGTATATATTGCACTACC
AGCCCAATTTAAAAATGGGCCAAGCTTCAAGCAAAGATTTTTCAACCCAAGCCCAAACCAATTTT
ATTAACCTAAAAGATTGACCCTTGTTCCCACTTCCCAGCAGACCCAGTCTTGATATACCCTTTTC
CCTTTCCAATCCCTATTCTCCCTTCCTT
Found at i:22518346 original size:211 final size:210
Alignment explanation
Indices: 22517982--22518420 Score: 691
Period size: 211 Copynumber: 2.1 Consensus size: 210
22517972 TAGTCGTTAC
* * * *
22517982 TTACCACGTGACACACTTTCACCAACCTTAGTTTCCCCACTTAACCATTCACTCATTCACAAAGA
1 TTACCACCTGACACACTTGCACCAACCTCAGTTTCCCCACTTAACCATTCACCCATTCACAAAGA
*
22518047 CAACACCCCCACCACGATCAGAGACCTCTAGCATCGCTACTCATTTGTCTCCAACATTCAACCTT
66 CAACACCCCCACCACGATCAGAGACCTCCAGCATCGCTACTCATTTGTCTCCAACATTCAACCTT
* * *
22518112 CAGTCTCATCGCATATTGTAATAATAGCTAGTTAGTAGTTACTAAGAAAAACTACTCATTATCAT
131 CAGTCTCATCGCACATTGTAATAACAACTAGTTAGTAGTTACTAA-AAAAACTACTCATTATCAT
*
22518177 AATGCATGCAATAATT
195 AATGCATACAATAATT
* *
22518193 TTACCACCTGACACACTTGCACCAACCTCAG-TTCCCCTATTTACCCATTCACCCATTCACAAAG
1 TTACCACCTGACACACTTGCACCAACCTCAGTTTCCCC-ACTTAACCATTCACCCATTCACAAAG
* * *
22518257 ACAACACCCCCACCACGCTCAGAGACCTCCAGCATCGCTACTCATTTGTCTCCGACATTCAGCCT
65 ACAACACCCCCACCACGATCAGAGACCTCCAGCATCGCTACTCATTTGTCTCCAACATTCAACCT
* * *
22518322 TCAGTCTCATCGCACATTGTAATAACAACTAGTTAGTAGTTACTAAAATAACTACTTATTATGAT
130 TCAGTCTCATCGCACATTGTAATAACAACTAGTTAGTAGTTACTAAAAAAACTACTCATTATCAT
22518387 AATGCATACAATAATT
195 AATGCATACAATAATT
*
22518403 TTACCACCTAACACACTT
1 TTACCACCTGACACACTT
22518421 TCAATGCCAA
Statistics
Matches: 209, Mismatches: 18, Indels: 3
0.91 0.08 0.01
Matches are distributed among these distances:
210 54 0.26
211 155 0.74
ACGTcount: A:0.32, C:0.31, G:0.09, T:0.28
Consensus pattern (210 bp):
TTACCACCTGACACACTTGCACCAACCTCAGTTTCCCCACTTAACCATTCACCCATTCACAAAGA
CAACACCCCCACCACGATCAGAGACCTCCAGCATCGCTACTCATTTGTCTCCAACATTCAACCTT
CAGTCTCATCGCACATTGTAATAACAACTAGTTAGTAGTTACTAAAAAAACTACTCATTATCATA
ATGCATACAATAATT
Found at i:22519369 original size:877 final size:871
Alignment explanation
Indices: 22518016--22521051 Score: 4024
Period size: 877 Copynumber: 3.5 Consensus size: 871
22518006 ACCTTAGTTT
* * * *
22518016 CCCCACTTAACCATTCACTCATTCACAAAGACAACACCCCCACCACGATCAGAGACCTCTAGCAT
1 CCCCACTCAACCATTCACTCATTCACAAAGACAACACCCCCACCACGCTCAAAGACCTCCAGCAT
* * * *
22518081 CGCTACTCATTTGTCTCCAACATTCAACCTTCAGTCTCATCGCATATTGTAATAATAGCTAGTTA
66 CGCTACTCATTTGTCTCCAACATTCAGCCTTCAGTCTCATCGCACATTGTAATAACAACTAGTTA
* * *
22518146 GTAGTTACTAAGAA-AAACTACTCATTATCATAATGCATGCAATAATTTTACCACCTGACACACT
131 GTAGTTACTAA-AAGAAACTACTTATTATGATAATGCATACAATAATTTTACCACCTGACACACT
* * * *
22518210 TGCACCAACCTCAGTTCCCCTATTTACCCATTCACCCATTCACAAAGACAACACCCCCACCACGC
195 TTCACCAACCTCAGTTCCCCTACTCACCCATTCACTCATTCACAAAGACAACACCCCCACCACGC
*
22518275 TCAGAGACCTCCAGCATCGCTACTCATTTGTCTCCGACATTCAGCCTTCAGTCTCATCGCACATT
260 TCAGAGACCTCCAGCATCGCTACTCATTTGTCTCCAACATTCAGCCTTCAG-CTCATCGCACATT
* * *
22518340 GTAATAACAACTAGTTAGTAGTTACTAAAATAACTACTTATTATGATAATGCATACAATAATTTT
324 GTAATAACAACTAGTTAATAGTTACTAAAAAAACTACTTATTATGATAATGCATAAAATAATTTT
* * *
22518405 ACCACCTAACACACTTTCAATGCCAATAATCTTTACTGTGGAATATAAAATAATCTCATTTTTCT
389 ACCACCTGACACACTTTCACTGCCAATAATCTTTACTGTGGAATATAAAATGATCTCATTTTTCT
*
22518470 TGGTTTTATAGAATTTTTTTCATAGAGATTCATTGTATATATTGCACTACCAATCCGTTTTAAAA
454 TGGTTTTATAGAATTTTTTTCATAGAGATT-ATTGTATATATTGCACTACCAGTCCGTTTTAAAA
* * * *
22518535 ATGGGTCGGGCTTCGAGCAGGGATTTTTCAACCTAGGCCTAGCTCAATTTTATTAACCTAGAAA-
518 ATGGGTCGGGCTTCGAG-AGGGATTTTTCAACCCAAGCCTAGCCCGATTTTATTAACCTA-AAAG
* * *
22518599 TTTTACCCTTGTTCCCACTTCCCAGCAGACCTAGTGTTGATATTCCCTTTTCCCTTCCAATCTCT
581 TTTTACCCTTGTTCCCACTTCCCAGCAGACCCAGTCTTGATATTCCCCTTTCCCTTCCAATC-CT
* *
22518664 ATTTTCCATTCCTTAATCCCTAATCCTTAAATTTTTCCTCATTTACTGCTTCTTTGGTGTTGCCA
645 ATTTTCC-TTCCTTAATCCCTAATCCTTAAATTTTTCCTTATTTATTGCTTCTTTGGTGTTGCCA
* * *
22518729 CCATTGTTGCTTCTCTTCCTTTTACTGCTTTTCATTTGTTTCGTTGTCATTGCTACCATTGTTGC
709 CCATTGTTGCTTCTCTTCCTTTTATTGCTTTTCATTTATTTCGTTGTCATTGCTGCCATTGTTGC
* * * * * * *
22518794 TCTTTTACCTTCTGCTAAGTTTTTGCTTCTTCACTAGCTGTTAATTGTCGTTGCTGCTTTTTGGT
774 TCTTTTACCTTCTGCTTAGTTTTT-CTTCTTCACTAGCTGTTAGTTGCCGCTGCTACTTTTCGCT
* *
22518859 TCTCTACCTTCTGTAAATTCTACAACCACAATTC
838 TCTCTACCTTCTGCAAATTCTACAACCTCAATTC
*
22518893 CCCCACTCAACCATTCACTCATTCACAAAGACAACACCCTCACCACGCTCAAAGACCTCCAGCAT
1 CCCCACTCAACCATTCACTCATTCACAAAGACAACACCCCCACCACGCTCAAAGACCTCCAGCAT
* * * *
22518958 TGCTGCTCATTTGTCTCCAACATTCACCCTTCAGTCTCATCGCACATTGTAATAACAACTAGTAA
66 CGCTACTCATTTGTCTCCAACATTCAGCCTTCAGTCTCATCGCACATTGTAATAACAACTAGTTA
* * * * * *
22519023 GTAGTTAGTAAAAGAAAGTACTTATTATGATAATTCATACAATAGTTTTAGCACCTGACATACTT
131 GTAGTTACTAAAAGAAACTACTTATTATGATAATGCATACAATAATTTTACCACCTGACACACTT
* ** * * **
22519088 TCACCAACCTCAGTTCCCCTACTCACCCATTCACTTATTCACAAAGGTAACACCCCTACAACATT
196 TCACCAACCTCAGTTCCCCTACTCACCCATTCACTCATTCACAAAGACAACACCCCCACCACGCT
* * **
22519153 CAGAGACCTCCAGCGTCGCTGCTCATTTGTCTCTGACATTCAGCCTTCAG-TCATCGCACATTGT
261 CAGAGACCTCCAGCATCGCTACTCATTTGTCTCCAACATTCAGCCTTCAGCTCATCGCACATTGT
22519217 AATAACAACTAGTTAATAGTTACTAAAAAAATCTACTTATTATGATAATGCATAAAATAATTTTA
326 AATAACAACTAGTTAATAGTTACTAAAAAAA-CTACTTATTATGATAATGCATAAAATAATTTTA
* * * ** *
22519282 CCACTTGTCACACTTTCACTGCCAATAATCTTTACCGCAGAATGTAAAATGATCTCATTTTTCTT
390 CCACCTGACACACTTTCACTGCCAATAATCTTTACTGTGGAATATAAAATGATCTCATTTTTCTT
* *
22519347 GGTTTAATAAAATTTATTTTCATAGAGATTTATTGTATATATTGCACTACCAGTCCGTTTTAAAA
455 GGTTTTATAGAATTT-TTTTCATAGAGA-TTATTGTATATATTGCACTACCAGTCCGTTTTAAAA
* * * *
22519412 ATGGGTCGGGCTTCGAGTAAGGATTTTTCAACCCATGCCCAGCCCGATTTTATTAACCTAAAAGG
518 ATGGGTCGGGCTTCGAG-AGGGATTTTTCAACCCAAGCCTAGCCCGATTTTATTAACCTAAAAGT
* * *
22519477 TTTACCATTGTTCGCACTTCCCAACAGACCCAGTCTTGATATTCCCCTTTCCCTTTCCAATCCCT
582 TTTACCCTTGTTCCCACTTCCCAGCAGACCCAGTCTTGATATTCCCCTTTCCC-TTCCAAT-CCT
* *
22519542 ATTTTCTCTTCCTTAATCCCTAATCCTTAAATTTTTCCTTATTTATTGCTTCTTCGATGTTGCCA
645 ATTTTC-CTTCCTTAATCCCTAATCCTTAAATTTTTCCTTATTTATTGCTTCTTTGGTGTTGCCA
* * * * * **
22519607 CCATTGTT-ATTCTCTTCTTTTTATTGGTTTTCAGTTATTTCGTTGTTATTGCTGCCATTGTTAT
709 CCATTGTTGCTTCTCTTCCTTTTATTGCTTTTCATTTATTTCGTTGTCATTGCTGCCATTGTTGC
* * * *
22519671 TTTTTTACCTTCTGCTTAGTTTCTACTTCTTCGCTAG-TCGTTAGTTGCCGCTACTACTTTTCGC
774 TCTTTTACCTTCTGCTTAGTTT-TTCTTCTTCACTAGCT-GTTAGTTGCCGCTGCTACTTTTCGC
* *
22519735 TTCTCCATCTTCTGCAAATTCTACAACCTCAATTC
837 TTCTCTACCTTCTGCAAATTCTACAACCTCAATTC
* * ***
22519770 CTCCACTCACCCATTCACTCATTCACAAAGACAACACCCCCACCACGCT-AAGAGACCTCCAATG
1 CCCCACTCAACCATTCACTCATTCACAAAGACAACACCCCCACCACGCTCAA-AGACCTCCAGCA
* * * * *
22519834 TCACTACTCATTTATTTCCAACATTCAGACTTGAGTCTCATCGCACATTGTAATAACAACTAGTT
65 TCGCTACTCATTTGTCTCCAACATTCAGCCTTCAGTCTCATCGCACATTGTAATAACAACTAGTT
* * *
22519899 CGTAGTTACTAAAAAAAACTACTTATTATGATAATGCATACAATAAATTTACCACCTGACACACT
130 AGTAGTTACTAAAAGAAACTACTTATTATGATAATGCATACAATAATTTTACCACCTGACACACT
* *
22519964 TTCACCAACCTCAGCTCCCCTACTCACCCATTCACTCATTCACAAAGACAACA-CCCTACCACGC
195 TTCACCAACCTCAGTTCCCCTACTCACCCATTCACTCATTCACAAAGACAACACCCCCACCACGC
* * * * *
22520028 TTAGAGACTTTCAACATCGCTATTCATTTGTCTCCAACATTCAGCCTTCAGACTCATCGCACATT
260 TCAGAGACCTCCAGCATCGCTACTCATTTGTCTCCAACATTCAGCCTTCAG-CTCATCGCACATT
* * *
22520093 GTAATAACAACTAGTTAGTAGTTACTAAAAAAACTACTTATTTTGATAATGCATACAATAATTTT
324 GTAATAACAACTAGTTAATAGTTACTAAAAAAACTACTTATTATGATAATGCATAAAATAATTTT
* *
22520158 ACCACCTGACACACTTCCACTGCCAATAATCTTTACTGTGGAATATAATATGATCTCATTTTTCT
389 ACCACCTGACACACTTTCACTGCCAATAATCTTTACTGTGGAATATAAAATGATCTCATTTTTCT
* * * **
22520223 AGGTTTTAGAGAATTTTTTTCATAGAGAATTATTGTATGTATTGCACTACCAGTCTATTTTAAAA
454 TGGTTTTATAGAATTTTTTTCATAGAG-ATTATTGTATATATTGCACTACCAGTCCGTTTTAAAA
* *
22520288 ATTGGTCAGGCTTCGA-ATGAGGATTTTTCAACCCAAGCCTAGCCCGATTTTATTAACCTAAAAG
518 ATGGGTCGGGCTTCGAGA-G-GGATTTTTCAACCCAAGCCTAGCCCGATTTTATTAACCTAAAAG
* * ** * *
22520352 TTTTTCCCTTATTCCCACTTCCCAGTTGACCCAGTCTTTATATTCCCCTTTCTCTTCCCAATCCT
581 TTTTACCCTTGTTCCCACTTCCCAGCAGACCCAGTCTTGATATTCCCCTTTCCCTT-CCAATCC-
* *
22520417 TATTTTTCCTTCCTTAATCCCTGATCCTTAAATTTTTCCTTATTTATTACTTCTTTGGTGTTGCC
644 TA-TTTTCCTTCCTTAATCCCTAATCCTTAAATTTTTCCTTATTTATTGCTTCTTTGGTGTTGCC
* * * * * * * * *
22520482 ACTATCGTTGCTTCTCTAT-CTTTTTTTGCTTTTCGTTTTTTTTGTTGTCATTACCGTCATTGTT
708 ACCATTGTTGCTTCTCT-TCCTTTTATTGCTTTTCATTTATTTCGTTGTCATTGCTGCCATTGTT
* * * * *
22520546 GC-CTTTTTACCTTCTGCTTAGTTTCTTCTTCTTCGCCAATCT-TTAGTAGCCACTGCTACTTTT
772 GCTC-TTTTACCTTCTGCTTAGTTT-TTCTTCTTC-ACTAGCTGTTAGTTGCCGCTGCTACTTTT
* *
22520609 CGCTTCTTTACCTTCTGCAAATACTACAACCTCAATTC
834 CGCTTCTCTACCTTCTGCAAATTCTACAACCTCAATTC
* * * * *
22520647 CCCCACTC-A-C---CA---ATTCACAAAGATAACACCCCTACCACACTCAAAGACATCCAGCAC
1 CCCCACTCAACCATTCACTCATTCACAAAGACAACACCCCCACCACGCTCAAAGACCTCCAGCAT
* * * * *
22520704 CGCTACTCATTTGTCTCCAACATTCAGCTTTCAGTTTTATTGCACATTGTAATAACGACTAGTTA
66 CGCTACTCATTTGTCTCCAACATTCAGCCTTCAGTCTCATCGCACATTGTAATAACAACTAGTTA
* *
22520769 GTAGTTACTAAAAAGAAACTACTTACTATGATAATGCATGCAATAATTTTACCATTTTACCACCT
131 GTAGTTACT-AAAAGAAACTACTTATTATGATAATGCAT---ACAA---TA--ATTTTACCACCT
* * *
22520834 GACACACTTTCACCAGCCTCAGTTCCCCTACTCATCCATTCACTCATTCACAAAGACATCACCCC
187 GACACACTTTCACCAACCTCAGTTCCCCTACTCACCCATTCACTCATTCACAAAGACAACACCCC
* * * *
22520899 CACCACGCTCAGAGATCTCCAGCGTCGTTACTCATTTGTCTCTAACATTCAGCCTTCAG-TCATC
252 CACCACGCTCAGAGACCTCCAGCATCGCTACTCATTTGTCTCCAACATTCAGCCTTCAGCTCATC
*
22520963 GCACATTGTAATAACAACTAGTTAATAGTTACTAAAAAAAACTACTTATTATGATAATGTATAAA
317 GCACATTGTAATAACAACTAGTTAATAGTTACT-AAAAAAACTACTTATTATGATAATGCATAAA
*
22521028 ATAATTTTACCACCTAACACACTT
381 ATAATTTTACCACCTGACACACTT
22521052 GCACCAACCT
Statistics
Matches: 1881, Mismatches: 242, Indels: 71
0.86 0.11 0.03
Matches are distributed among these distances:
869 97 0.05
870 29 0.02
872 2 0.00
873 3 0.00
874 1 0.00
875 48 0.03
876 372 0.20
877 1029 0.55
878 245 0.13
879 55 0.03
ACGTcount: A:0.28, C:0.27, G:0.10, T:0.35
Consensus pattern (871 bp):
CCCCACTCAACCATTCACTCATTCACAAAGACAACACCCCCACCACGCTCAAAGACCTCCAGCAT
CGCTACTCATTTGTCTCCAACATTCAGCCTTCAGTCTCATCGCACATTGTAATAACAACTAGTTA
GTAGTTACTAAAAGAAACTACTTATTATGATAATGCATACAATAATTTTACCACCTGACACACTT
TCACCAACCTCAGTTCCCCTACTCACCCATTCACTCATTCACAAAGACAACACCCCCACCACGCT
CAGAGACCTCCAGCATCGCTACTCATTTGTCTCCAACATTCAGCCTTCAGCTCATCGCACATTGT
AATAACAACTAGTTAATAGTTACTAAAAAAACTACTTATTATGATAATGCATAAAATAATTTTAC
CACCTGACACACTTTCACTGCCAATAATCTTTACTGTGGAATATAAAATGATCTCATTTTTCTTG
GTTTTATAGAATTTTTTTCATAGAGATTATTGTATATATTGCACTACCAGTCCGTTTTAAAAATG
GGTCGGGCTTCGAGAGGGATTTTTCAACCCAAGCCTAGCCCGATTTTATTAACCTAAAAGTTTTA
CCCTTGTTCCCACTTCCCAGCAGACCCAGTCTTGATATTCCCCTTTCCCTTCCAATCCTATTTTC
CTTCCTTAATCCCTAATCCTTAAATTTTTCCTTATTTATTGCTTCTTTGGTGTTGCCACCATTGT
TGCTTCTCTTCCTTTTATTGCTTTTCATTTATTTCGTTGTCATTGCTGCCATTGTTGCTCTTTTA
CCTTCTGCTTAGTTTTTCTTCTTCACTAGCTGTTAGTTGCCGCTGCTACTTTTCGCTTCTCTACC
TTCTGCAAATTCTACAACCTCAATTC
Found at i:22520121 original size:210 final size:210
Alignment explanation
Indices: 22519774--22520173 Score: 640
Period size: 210 Copynumber: 1.9 Consensus size: 210
22519764 CAATTCCTCC
**
22519774 ACTCACCCATTCACTCATTCACAAAGACAACACCCCCACCACGCTAAGAGACCTCCAATGTCACT
1 ACTCACCCATTCACTCATTCACAAAGACAACACCCCCACCACGCTAAGAGACCTCCAACATCACT
* * * *
22519839 ACTCATTTATTTCCAACATTCAGACTTGAGTCTCATCGCACATTGTAATAACAACTAGTTCGTAG
66 ACTCATTTATCTCCAACATTCAGACTTCAGACTCATCGCACATTGTAATAACAACTAGTTAGTAG
22519904 TTACTAAAAAAAACTACTTATTATGATAATGCATACAATAAATTTACCACCTGACACACTTTCAC
131 TTACT-AAAAAAACTACTTATTATGATAATGCATACAATAAATTTACCACCTGACACACTTTCAC
22519969 CAACCTCAGCTCCCCT
195 CAACCTCAGCTCCCCT
* * * * *
22519985 ACTCACCCATTCACTCATTCACAAAGACAACA-CCCTACCACGCTTAGAGACTTTCAACATCGCT
1 ACTCACCCATTCACTCATTCACAAAGACAACACCCCCACCACGCTAAGAGACCTCCAACATCACT
* * *
22520049 ATTCATTTGTCTCCAACATTCAGCCTTCAGACTCATCGCACATTGTAATAACAACTAGTTAGTAG
66 ACTCATTTATCTCCAACATTCAGACTTCAGACTCATCGCACATTGTAATAACAACTAGTTAGTAG
* *
22520114 TTACTAAAAAAACTACTTATTTTGATAATGCATACAATAATTTTACCACCTGACACACTT
131 TTACTAAAAAAACTACTTATTATGATAATGCATACAATAAATTTACCACCTGACACACTT
22520174 CCACTGCCAA
Statistics
Matches: 173, Mismatches: 16, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
209 53 0.31
210 88 0.51
211 32 0.18
ACGTcount: A:0.34, C:0.29, G:0.08, T:0.28
Consensus pattern (210 bp):
ACTCACCCATTCACTCATTCACAAAGACAACACCCCCACCACGCTAAGAGACCTCCAACATCACT
ACTCATTTATCTCCAACATTCAGACTTCAGACTCATCGCACATTGTAATAACAACTAGTTAGTAG
TTACTAAAAAAACTACTTATTATGATAATGCATACAATAAATTTACCACCTGACACACTTTCACC
AACCTCAGCTCCCCT
Found at i:22521130 original size:209 final size:210
Alignment explanation
Indices: 22520659--22521261 Score: 807
Period size: 209 Copynumber: 2.8 Consensus size: 210
22520649 CCACTCACCA
* * * * **
22520659 ATTCACAAAGATAACACCCCTACCACACTCAAAGACATCCAGCACCGCTACTCATTTGTCTCCAA
1 ATTCACAAAGACAACACCCCCACCACGCTCAAAGACCTCCAGCGTCGCTACTCATTTGTCTCCAA
* * * *
22520724 CATTCAGCTTTCAGTTTTATTGCACATTGTAATAACGACTAGTTAGTAGTTACTAAAAAGAAACT
66 CATTCAGCCTTCAG-TTCATCGCACATTGTAATAACAACTAGTTAGTAGTTACTAAAAA-AAACT
* * *
22520789 ACTTACTATGATAATGCATGCAATAATTTTACCATTTTACCACCTGACACACTTTCACCAGCCTC
129 ACTTATTATGATAATGCAT--AA-AA---TA--ATTTTACCACCTGACACACTTGCACCAACCTC
22520854 AGTTCCCCTACTCATCCATTCACTC
186 AGTTCCCCTACTCATCCATTCACTC
* * * * *
22520879 ATTCACAAAGACATCACCCCCACCACGCTCAGAGATCTCCAGCGTCGTTACTCATTTGTCTCTAA
1 ATTCACAAAGACAACACCCCCACCACGCTCAAAGACCTCCAGCGTCGCTACTCATTTGTCTCCAA
*
22520944 CATTCAGCCTTCAG-TCATCGCACATTGTAATAACAACTAGTTAATAGTTACTAAAAAAAACTAC
66 CATTCAGCCTTCAGTTCATCGCACATTGTAATAACAACTAGTTAGTAGTTACTAAAAAAAACTAC
* *
22521008 TTATTATGATAATGTATAAAATAATTTTACCACCTAACACACTTGCACCAACCTCAGTTCCCCTA
131 TTATTATGATAATGCATAAAATAATTTTACCACCTGACACACTTGCACCAACCTCAGTTCCCCTA
*
22521073 CTCA-CCCTGTCACTC
196 CTCATCCAT-TCACTC
* * *
22521088 ATTCACAAAGACAACACCCCCACCGCGTTCACAGACCTCCAGCGTCGCTACTCATTTGTCTCCAA
1 ATTCACAAAGACAACACCCCCACCACGCTCAAAGACCTCCAGCGTCGCTACTCATTTGTCTCCAA
* ** *
22521153 CATTTAGCCTTCAGTCTCATCATACATTGTAATAACAACTAGTTAGTAGTTACT-AAAATAACTA
66 CATTCAGCCTTCAGT-TCATCGCACATTGTAATAACAACTAGTTAGTAGTTACTAAAAAAAACTA
*
22521217 CTTATTATGATAATGCATACAATAATTTTACCACCTGACACACTT
130 CTTATTATGATAATGCATAAAATAATTTTACCACCTGACACACTT
22521262 TCACTACCAA
Statistics
Matches: 343, Mismatches: 37, Indels: 16
0.87 0.09 0.04
Matches are distributed among these distances:
208 3 0.01
209 120 0.35
210 51 0.15
211 37 0.11
214 2 0.01
215 2 0.01
217 22 0.06
218 39 0.11
220 67 0.20
ACGTcount: A:0.33, C:0.29, G:0.09, T:0.29
Consensus pattern (210 bp):
ATTCACAAAGACAACACCCCCACCACGCTCAAAGACCTCCAGCGTCGCTACTCATTTGTCTCCAA
CATTCAGCCTTCAGTTCATCGCACATTGTAATAACAACTAGTTAGTAGTTACTAAAAAAAACTAC
TTATTATGATAATGCATAAAATAATTTTACCACCTGACACACTTGCACCAACCTCAGTTCCCCTA
CTCATCCATTCACTC
Found at i:22522084 original size:209 final size:209
Alignment explanation
Indices: 22521723--22522140 Score: 642
Period size: 209 Copynumber: 2.0 Consensus size: 209
22521713 GCAAATTCTG
* * * *
22521723 CAACCTTAGTTCCCCTACTCACCCATTTACTCATTCGCAAAGACAACACCCCCACCACGCTCAGA
1 CAACCTTAGTTCCCCCACTCACCCAGTCACTCATTCACAAAGACAACACCCCCACCACGCTCAGA
* * * ** * *
22521788 GACCTCCAGCGTCGCTGCTCATTTGTCTCTGACATTTAGCCTTCAATCTCATCGCACATTGAAAT
66 GACCTCAAGCATCGCTACTCATTTGTCTCCAACATTCAACCTTCAATCTCATCGCACATTGAAAT
22521853 AACAACTAGTTAGTAGTTACTAAAAAAACTACTTATTATGATAATGCATACAATAATTTTACCAC
131 AACAACTAGTTAGTAGTTACTAAAAAAACTACTTATTATGATAATGCATACAATAA-TTTACCAC
22521918 CTGACACACTTTCAC
195 CTGACACACTTTCAC
*
22521933 CAACCTTAGTTCCCCCATTCACCCAGTCACTCATTCACAAAGACAACA-CCCCACCACGCTCAGA
1 CAACCTTAGTTCCCCCACTCACCCAGTCACTCATTCACAAAGACAACACCCCCACCACGCTCAGA
* * * *
22521997 GTCCTCAAGCATCGCTACTCATTTGTCTCCAACATTCAACTTTCAGTCTCATCGCACATTGTAAT
66 GACCTCAAGCATCGCTACTCATTTGTCTCCAACATTCAACCTTCAATCTCATCGCACATTGAAAT
* *
22522062 AGA-AACTAGTTAGTAGTTACTAAAAAAACTACTTATTATGATAATGCATACGATAATTTACTAC
131 A-ACAACTAGTTAGTAGTTACTAAAAAAACTACTTATTATGATAATGCATACAATAATTTACCAC
22522126 CTGACACACTTTCAC
195 CTGACACACTTTCAC
22522141 TGCCAATAAT
Statistics
Matches: 189, Mismatches: 18, Indels: 4
0.90 0.09 0.02
Matches are distributed among these distances:
208 22 0.12
209 123 0.65
210 44 0.23
ACGTcount: A:0.32, C:0.30, G:0.10, T:0.28
Consensus pattern (209 bp):
CAACCTTAGTTCCCCCACTCACCCAGTCACTCATTCACAAAGACAACACCCCCACCACGCTCAGA
GACCTCAAGCATCGCTACTCATTTGTCTCCAACATTCAACCTTCAATCTCATCGCACATTGAAAT
AACAACTAGTTAGTAGTTACTAAAAAAACTACTTATTATGATAATGCATACAATAATTTACCACC
TGACACACTTTCAC
Found at i:22531816 original size:16 final size:17
Alignment explanation
Indices: 22531786--22531830 Score: 58
Period size: 17 Copynumber: 2.8 Consensus size: 17
22531776 AAAATTAAAG
*
22531786 AAAAAAACA-AAAAAC-
1 AAAAAAATAGAAAAACA
*
22531801 AAAATAATAGAAAAACA
1 AAAAAAATAGAAAAACA
22531818 AAAAAAATAGAAA
1 AAAAAAATAGAAA
22531831 CAAGGCCCAA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
15 7 0.28
16 6 0.24
17 12 0.48
ACGTcount: A:0.82, C:0.07, G:0.04, T:0.07
Consensus pattern (17 bp):
AAAAAAATAGAAAAACA
Found at i:22531822 original size:25 final size:23
Alignment explanation
Indices: 22531772--22531824 Score: 65
Period size: 23 Copynumber: 2.3 Consensus size: 23
22531762 AAAACAACCC
*
22531772 AAAAAAAATTAAAGAAAAAAACA
1 AAAAAAAAATAAAGAAAAAAACA
22531795 AAAAACAAAATAATAG--AAAAACA
1 AAAAA-AAAATAA-AGAAAAAAACA
22531818 AAAAAAA
1 AAAAAAA
22531825 TAGAAACAAG
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
22 2 0.07
23 17 0.63
24 6 0.22
25 2 0.07
ACGTcount: A:0.83, C:0.06, G:0.04, T:0.08
Consensus pattern (23 bp):
AAAAAAAAATAAAGAAAAAAACA
Found at i:22532608 original size:20 final size:20
Alignment explanation
Indices: 22532583--22532622 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
22532573 CATAACAAAA
22532583 CCTCTAATGAAGGTAACAAC
1 CCTCTAATGAAGGTAACAAC
22532603 CCTCTAATGAAGGTAACAAC
1 CCTCTAATGAAGGTAACAAC
22532623 TTCTTCTGTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.40, C:0.25, G:0.15, T:0.20
Consensus pattern (20 bp):
CCTCTAATGAAGGTAACAAC
Found at i:22535513 original size:47 final size:45
Alignment explanation
Indices: 22535359--22535628 Score: 185
Period size: 47 Copynumber: 5.8 Consensus size: 45
22535349 GGAATGAATT
* * *
22535359 GCCGATGCCATGTCCCAGACATGGTCTTATACTGGC-TCTCATATATGCG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCATCTC---TGTGAG
* * * *
22535408 TGCTGATGCATGTCCCAAACATGTCTTACACTAGCACAACTCT-T--G
1 -GCCGATGCATGTCCCAGACATGTCTTACACT-G-GCATCTCTGTGAG
* *
22535453 GCCGATGCGTGTCCCAGACACGTCTTACACTGGCTATCTCTGTCGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGC-ATCTCTGT-GAG
* *
22535500 GCCGATGCATGTCCCAGACATGTCTTACTCTGGCA-CTCATAAT-ATG
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCATCTC-T-GTGA-G
* * * * *
22535546 GCTGAAGCATGTCCCAGACATGTCTTACACTAGCCCTCGTCTG-GAT
1 GCCGATGCATGTCCCAGACATGTCTTACACT-GGCATC-TCTGTGAG
*
22535592 GCCAATGCCATGTCCCAGACATGGTCTTACACTGGCA
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCA
22535629 CACAAATCAC
Statistics
Matches: 176, Mismatches: 27, Indels: 37
0.73 0.11 0.15
Matches are distributed among these distances:
42 1 0.01
43 6 0.03
44 28 0.16
45 5 0.03
46 35 0.20
47 53 0.30
48 22 0.12
49 16 0.09
50 7 0.04
51 3 0.02
ACGTcount: A:0.22, C:0.30, G:0.21, T:0.27
Consensus pattern (45 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGGCATCTCTGTGAG
Found at i:22536348 original size:12 final size:12
Alignment explanation
Indices: 22536331--22536356 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
22536321 CTAAAAATGT
22536331 GAAAATCATCAA
1 GAAAATCATCAA
22536343 GAAAATCATCAA
1 GAAAATCATCAA
22536355 GA
1 GA
22536357 TCACTTACAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.58, C:0.15, G:0.12, T:0.15
Consensus pattern (12 bp):
GAAAATCATCAA
Found at i:22542213 original size:40 final size:40
Alignment explanation
Indices: 22542151--22542367 Score: 230
Period size: 40 Copynumber: 5.5 Consensus size: 40
22542141 AAGCCAAGTA
* * *
22542151 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCGAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACGAATG
* *
22542190 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACGAATG
* * *
22542230 CCTTTGGGACTTAGCCCGGACATAATAACTCGCACGAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACGAATG
* *
22542270 CCTTCGGGAATTAGCCCCGG-TATAATAACTCGCAC-AATTG
1 CCTTCGGGACTTAG-CCCGGATATAGTAACTCGCACGAA-TG
* * * *
22542310 CCTTCAGG-CTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACGAATG
22542349 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
22542368 TTATCATCCG
Statistics
Matches: 151, Mismatches: 19, Indels: 15
0.82 0.10 0.08
Matches are distributed among these distances:
38 6 0.04
39 37 0.25
40 103 0.68
41 5 0.03
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACGAATG
Found at i:22542363 original size:79 final size:81
Alignment explanation
Indices: 22542186--22542365 Score: 226
Period size: 79 Copynumber: 2.3 Consensus size: 81
22542176 TACTCGCTCG
* * **
22542186 AATGCCTTCGGGACATAG-CCCGGATATAGTAACTCGCACCAATGCCTTTGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCCGGATATAATAACTCGCACCAATGCCTTCAGGACTTAGCCCGGA
* *
22542250 CATAATAACTCGCACG
66 CATAATAACTAGCACA
*
22542266 AATGCCTTCGGGAATTAGCCCCGG-TATAATAACTCGCA-CAATTGCCTTCAGG-CTTAGCCCGG
1 AATGCCTTCGGGACTTAGCCCCGGATATAATAACTCGCACCAA-TGCCTTCAGGACTTAGCCCGG
* *
22542328 A-ATTAGTCACTAGCACA
65 ACA-TAATAACTAGCACA
22542345 AATGCCTTCGGGACTTAGCCC
1 AATGCCTTCGGGACTTAGCCC
22542366 GGTTATCATC
Statistics
Matches: 87, Mismatches: 10, Indels: 7
0.84 0.10 0.07
Matches are distributed among these distances:
78 1 0.01
79 44 0.51
80 37 0.43
81 5 0.06
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.23
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCCGGATATAATAACTCGCACCAATGCCTTCAGGACTTAGCCCGGA
CATAATAACTAGCACA
Found at i:22548479 original size:27 final size:27
Alignment explanation
Indices: 22548420--22548570 Score: 221
Period size: 27 Copynumber: 5.5 Consensus size: 27
22548410 TAAATTGTAC
*
22548420 AGCACTAAGTGTGCGAGTTGGACTATGT
1 AGCACTAAGTGTGCGAATT-GACTATGT
22548448 AGCACTAAGTGTGCGAATTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
*
22548475 TGCACTAAGTGTGCGAATTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* *
22548502 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGA-ATTGACTATGT
* *
22548530 AGCACTAAGTGTGCGAGTTGACTATAT
1 AGCACTAAGTGTGCGAATTGACTATGT
*
22548557 AGCACTGAGTGTGC
1 AGCACTAAGTGTGC
22548571 AGACTTAATA
Statistics
Matches: 113, Mismatches: 9, Indels: 3
0.90 0.07 0.02
Matches are distributed among these distances:
27 70 0.62
28 43 0.38
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAATTGACTATGT
Found at i:22548486 original size:55 final size:55
Alignment explanation
Indices: 22548420--22548570 Score: 232
Period size: 55 Copynumber: 2.7 Consensus size: 55
22548410 TAAATTGTAC
22548420 AGCACTAAGTGTGCGAGTTGGACTATGTAGCACTAAGTGTGCGA-ATTGACTATGT
1 AGCACTAAGTGTGCGAGTT-GACTATGTAGCACTAAGTGTGCGAGATTGACTATGT
* * * *
22548475 TGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGATTGACTATGT
* *
22548530 AGCACTAAGTGTGCGAGTTGACTATATAGCACTGAGTGTGC
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGC
22548571 AGACTTAATA
Statistics
Matches: 87, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
54 24 0.28
55 63 0.72
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.30
Consensus pattern (55 bp):
AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGATTGACTATGT
Found at i:22548534 original size:82 final size:82
Alignment explanation
Indices: 22548420--22548570 Score: 248
Period size: 82 Copynumber: 1.8 Consensus size: 82
22548410 TAAATTGTAC
* *
22548420 AGCACTAAGTGTGCGAGTTGGACTATGTAGCACTAAGTGTGCGAATTGACTATGTTGCACTAAGT
1 AGCACTAAGTGTGCGAGTTGGACTATGTAGCACTAAGTGTGCGAATTGACTATATAGCACTAAGT
22548485 GTGCGAATTGACTATGT
66 GTGCGAATTGACTATGT
* * * *
22548502 AGCACTAAGTGTGCGAGTTTGATTATGTAGCACTAAGTGTGCGAGTTGACTATATAGCACTGAGT
1 AGCACTAAGTGTGCGAGTTGGACTATGTAGCACTAAGTGTGCGAATTGACTATATAGCACTAAGT
22548567 GTGC
66 GTGC
22548571 AGACTTAATA
Statistics
Matches: 63, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
82 63 1.00
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.30
Consensus pattern (82 bp):
AGCACTAAGTGTGCGAGTTGGACTATGTAGCACTAAGTGTGCGAATTGACTATATAGCACTAAGT
GTGCGAATTGACTATGT
Found at i:22559532 original size:57 final size:57
Alignment explanation
Indices: 22559462--22559581 Score: 231
Period size: 57 Copynumber: 2.1 Consensus size: 57
22559452 ATAGCTGAAT
22559462 CAACCAAACATACTTATATACACCATGCCGATTCAATCAAACCACATCCAAAATCAC
1 CAACCAAACATACTTATATACACCATGCCGATTCAATCAAACCACATCCAAAATCAC
*
22559519 CGACCAAACATACTTATATACACCATGCCGATTCAATCAAACCACATCCAAAATCAC
1 CAACCAAACATACTTATATACACCATGCCGATTCAATCAAACCACATCCAAAATCAC
22559576 CAACCA
1 CAACCA
22559582 TTCTCAATAC
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
57 61 1.00
ACGTcount: A:0.43, C:0.34, G:0.04, T:0.18
Consensus pattern (57 bp):
CAACCAAACATACTTATATACACCATGCCGATTCAATCAAACCACATCCAAAATCAC
Found at i:22560845 original size:15 final size:15
Alignment explanation
Indices: 22560821--22560850 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
22560811 GTTCTTAATC
22560821 TAAACATATTCAAAT
1 TAAACATATTCAAAT
*
22560836 TAAACTTATTCAAAT
1 TAAACATATTCAAAT
22560851 ATATTTTCAC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.50, C:0.13, G:0.00, T:0.37
Consensus pattern (15 bp):
TAAACATATTCAAAT
Found at i:22561656 original size:14 final size:15
Alignment explanation
Indices: 22561639--22561667 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
22561629 ACACGAAAAT
22561639 TTCACACA-TATAAA
1 TTCACACATTATAAA
22561653 TTCACACATTATAAA
1 TTCACACATTATAAA
22561668 CACAGAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.48, C:0.21, G:0.00, T:0.31
Consensus pattern (15 bp):
TTCACACATTATAAA
Found at i:22562722 original size:43 final size:43
Alignment explanation
Indices: 22562643--22562799 Score: 181
Period size: 43 Copynumber: 3.7 Consensus size: 43
22562633 CAATGTCATA
* * * *
22562643 TCCCAGATATGGTCTTACATGTTATCACATATCGATGCCACTG
1 TCCCAGATATGGTCTTACACGTAATCACATAACGATGCCAATG
* * * *
22562686 TCCCAGATAGGGTCTTATACGAAATCATATAACGATGCCAATG
1 TCCCAGATATGGTCTTACACGTAATCACATAACGATGCCAATG
* *
22562729 TCCCAGACATGGTCTTACACGTAATCACA-ATACTATGCCAATG
1 TCCCAGATATGGTCTTACACGTAATCACATA-ACGATGCCAATG
* * *
22562772 TCCCAAACATGGTCTTACATGTAATCAC
1 TCCCAGATATGGTCTTACACGTAATCAC
22562800 GGTAATCCTA
Statistics
Matches: 97, Mismatches: 16, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
42 1 0.01
43 96 0.99
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.28
Consensus pattern (43 bp):
TCCCAGATATGGTCTTACACGTAATCACATAACGATGCCAATG
Found at i:22564757 original size:42 final size:42
Alignment explanation
Indices: 22564640--22564832 Score: 219
Period size: 42 Copynumber: 4.6 Consensus size: 42
22564630 ATACCAATGA
* * *
22564640 CATATCCCAGATATGGTCTTACATG-AGATCTCGTATCGATGC
1 CATATCCCAGATATGGTCTTACACGAAG-TCTCATATTGATGC
* * * * * **
22564682 CAGTAGCCCA-ACTATAGTCTTACATGAAATCTCACATCAATGC
1 CA-TATCCCAGA-TATGGTCTTACACGAAGTCTCATATTGATGC
* *
22564725 CATATCCTAGATATGGTTTTACACGAAGTCTCATATTGATGC
1 CATATCCCAGATATGGTCTTACACGAAGTCTCATATTGATGC
* *
22564767 CATATCCCAAATATGGTCTTACAAGAAGTCTCATATTGATGC
1 CATATCCCAGATATGGTCTTACACGAAGTCTCATATTGATGC
22564809 CATATCCCAGATATGGTCTTACAC
1 CATATCCCAGATATGGTCTTACAC
22564833 ATAGTCTTAG
Statistics
Matches: 126, Mismatches: 21, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
42 92 0.73
43 33 0.26
44 1 0.01
ACGTcount: A:0.31, C:0.24, G:0.15, T:0.31
Consensus pattern (42 bp):
CATATCCCAGATATGGTCTTACACGAAGTCTCATATTGATGC
Found at i:22564814 original size:84 final size:85
Alignment explanation
Indices: 22564634--22564832 Score: 249
Period size: 84 Copynumber: 2.4 Consensus size: 85
22564624 GGTACCATAC
* * * *
22564634 CAATGACATATCCCAGATATGGTCTTACATGAGATCTCGTATCGATGCCAGTAGCCCAACTATAG
1 CAATGCCATATCCCAGATATGGTCTTACACGAGATCTCATATCGATGCCAGTAGCCCAAATATAG
*
22564699 TCTTACATGAAATCTCACAT
66 TCTTACAAGAAATCTCACAT
* * * * *
22564719 CAATGCCATATCCTAGATATGGTTTTACACGA-AGTCTCATATTGATGCCA-TATCCCAAATATG
1 CAATGCCATATCCCAGATATGGTCTTACACGAGA-TCTCATATCGATGCCAGTAGCCCAAATATA
* *
22564782 GTCTTACAAGAAGTCTCATAT
65 GTCTTACAAGAAATCTCACAT
**
22564803 TGATGCCATATCCCAGATATGGTCTTACAC
1 CAATGCCATATCCCAGATATGGTCTTACAC
22564833 ATAGTCTTAG
Statistics
Matches: 97, Mismatches: 16, Indels: 3
0.84 0.14 0.03
Matches are distributed among these distances:
84 55 0.57
85 42 0.43
ACGTcount: A:0.31, C:0.24, G:0.15, T:0.30
Consensus pattern (85 bp):
CAATGCCATATCCCAGATATGGTCTTACACGAGATCTCATATCGATGCCAGTAGCCCAAATATAG
TCTTACAAGAAATCTCACAT
Found at i:22569005 original size:30 final size:30
Alignment explanation
Indices: 22568971--22569029 Score: 100
Period size: 30 Copynumber: 2.0 Consensus size: 30
22568961 AACTTATTTA
22568971 TTGTTAAATTTGTTATTATTTTAAAGACAT
1 TTGTTAAATTTGTTATTATTTTAAAGACAT
* *
22569001 TTGTTAATTTTGTTATTATTTTAGAGACA
1 TTGTTAAATTTGTTATTATTTTAAAGACA
22569030 AGTGTTATTT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.31, C:0.03, G:0.12, T:0.54
Consensus pattern (30 bp):
TTGTTAAATTTGTTATTATTTTAAAGACAT
Found at i:22569036 original size:30 final size:30
Alignment explanation
Indices: 22568972--22569036 Score: 94
Period size: 30 Copynumber: 2.2 Consensus size: 30
22568962 ACTTATTTAT
**
22568972 TGTTAAATTTGTTATTATTTTAAAGACATT
1 TGTTAAATTTGTTATTATTTTAAAGACAAG
* *
22569002 TGTTAATTTTGTTATTATTTTAGAGACAAG
1 TGTTAAATTTGTTATTATTTTAAAGACAAG
22569032 TGTTA
1 TGTTA
22569037 TTTAAGTATA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.31, C:0.03, G:0.14, T:0.52
Consensus pattern (30 bp):
TGTTAAATTTGTTATTATTTTAAAGACAAG
Found at i:22576118 original size:42 final size:42
Alignment explanation
Indices: 22576020--22576260 Score: 166
Period size: 43 Copynumber: 5.7 Consensus size: 42
22576010 CACAAGTACA
* * * *
22576020 ATGCCAACGTCCCGGACATGGTCTTACATTTAATTC-AATATCG
1 ATGCCAATGTCCCAGACATGGTCTTACA-TGAAATCAAATA-CG
** *
22576063 ATGCCTCTGTCCCAGACAGGGTCTTACATGAAATCAAATACG
1 ATGCCAATGTCCCAGACATGGTCTTACATGAAATCAAATACG
* *
22576105 ATGCCAATGTCCCAGACATGGTCTTATATGTAAATCTCAAT-CG
1 ATGCCAATGTCCCAGACATGGTCTTACATG-AAATC-AAATACG
** * * *
22576148 -TGGCCTGTGTTCCAGACATGGTCTTACATGATATCAGATACG
1 AT-GCCAATGTCCCAGACATGGTCTTACATGAAATCAAATACG
* * * * * * *
22576190 ATGCCAATTTCCTAGGCATGGTATTATACGTAAATCTCAAT-CG
1 ATGCCAATGTCCCAGACATGGTCTTACATG-AAATC-AAATACG
* * * *
22576233 AGGCCTATGTCCCAAACACGGTCTTACA
1 ATGCCAATGTCCCAGACATGGTCTTACA
22576261 CGATATCTCA
Statistics
Matches: 150, Mismatches: 40, Indels: 16
0.73 0.19 0.08
Matches are distributed among these distances:
41 2 0.01
42 59 0.39
43 84 0.56
44 5 0.03
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (42 bp):
ATGCCAATGTCCCAGACATGGTCTTACATGAAATCAAATACG
Found at i:22576163 original size:85 final size:85
Alignment explanation
Indices: 22576020--22576260 Score: 272
Period size: 85 Copynumber: 2.8 Consensus size: 85
22576010 CACAAGTACA
* * * * * *
22576020 ATGCCAACGTCCCGGACATGGTCTTACAT-TTAAT-TCAATATCGAT-GCCTCTGTCCCAGACAG
1 ATGCCAATGTCCCAGACATGGTCTTATATGTAAATCTC-A-ATCG-TGGCCTATGTCCCAGACAC
22576082 GGTCTTACATGAAATCAAATACG
63 GGTCTTACATGAAATCAAATACG
* * *
22576105 ATGCCAATGTCCCAGACATGGTCTTATATGTAAATCTCAATCGTGGCCTGTGTTCCAGACATGGT
1 ATGCCAATGTCCCAGACATGGTCTTATATGTAAATCTCAATCGTGGCCTATGTCCCAGACACGGT
* *
22576170 CTTACATGATATCAGATACG
66 CTTACATGAAATCAAATACG
* * * * * * *
22576190 ATGCCAATTTCCTAGGCATGGTATTATACGTAAATCTCAATCGAGGCCTATGTCCCAAACACGGT
1 ATGCCAATGTCCCAGACATGGTCTTATATGTAAATCTCAATCGTGGCCTATGTCCCAGACACGGT
22576255 CTTACA
66 CTTACA
22576261 CGATATCTCA
Statistics
Matches: 134, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
84 1 0.01
85 126 0.94
86 5 0.04
87 2 0.01
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (85 bp):
ATGCCAATGTCCCAGACATGGTCTTATATGTAAATCTCAATCGTGGCCTATGTCCCAGACACGGT
CTTACATGAAATCAAATACG
Found at i:22576266 original size:85 final size:85
Alignment explanation
Indices: 22576059--22576289 Score: 275
Period size: 85 Copynumber: 2.7 Consensus size: 85
22576049 TTAATTCAAT
* * * * * * *
22576059 ATCGATGCCTCTGTCCCAGACAGGGTCTTACATGAAATCAAATACGATGCCAATGTCCCAGACAT
1 ATCGAGGCCTATGTCCCAGACACGGTCTTACATGATATCAGATACGATGCCAATTTCCTAGACAT
* *
22576124 GGTCTTATATGTAAATCTCA
66 GGTATTATACGTAAATCTCA
* * * * *
22576144 ATCGTGGCCTGTGTTCCAGACATGGTCTTACATGATATCAGATACGATGCCAATTTCCTAGGCAT
1 ATCGAGGCCTATGTCCCAGACACGGTCTTACATGATATCAGATACGATGCCAATTTCCTAGACAT
22576209 GGTATTATACGTAAATCTCA
66 GGTATTATACGTAAATCTCA
* * *
22576229 ATCGAGGCCTATGTCCCAAACACGGTCTTACACGATATCTCAGATA-GATGTCAATGTTCCT
1 ATCGAGGCCTATGTCCCAGACACGGTCTTACATGATA--TCAGATACGATGCCAAT-TTCCT
22576290 TTAGAAGCAT
Statistics
Matches: 124, Mismatches: 19, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
85 104 0.84
86 8 0.06
87 12 0.10
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.29
Consensus pattern (85 bp):
ATCGAGGCCTATGTCCCAGACACGGTCTTACATGATATCAGATACGATGCCAATTTCCTAGACAT
GGTATTATACGTAAATCTCA
Found at i:22578327 original size:46 final size:48
Alignment explanation
Indices: 22578219--22578540 Score: 267
Period size: 46 Copynumber: 6.8 Consensus size: 48
22578209 TGCTTATTGT
* * * * *
22578219 GAGCTAGTGTAAGACCATTTCTGGGACATGGAGTCGGCATTGAGAAG-A
1 GAGCTAGTGTAAGACCATGTCTGGGACATGCA-TCGGCCTCGAGATGTA
* *
22578267 GTGCTAGTGTAAGA-CATGTCTGGGACATGCATTGGCCTCGAGATGTA
1 GAGCTAGTGTAAGACCATGTCTGGGACATGCATCGGCCTCGAGATGTA
22578314 -AGCTAGTGTAAGA-CATGTCTGGGACATGCATCGG-CTACGAGATGT-
1 GAGCTAGTGTAAGACCATGTCTGGGACATGCATCGGCCT-CGAGATGTA
* * *
22578359 G-TC-AGTGTAAGACCATGTCTGGGACATGGCATCGGCAC-GGATATGTGA
1 GAGCTAGTGTAAGACCATGTCTGGGACAT-GCATCGGC-CTCGAGATGT-A
* **
22578407 GAGCTAGTGTAAGACCATGTCTGGGACATGGCGTCGGCCTCGATTTCG-A
1 GAGCTAGTGTAAGACCATGTCTGGGACAT-GCATCGGCCTCGAGAT-GTA
* * ** * *
22578456 TAG-TCAGTGTAAGACCATGTTTGGGACATGGCATC-TACT--TGATGGA
1 GAGCT-AGTGTAAGACCATGTCTGGGACAT-GCATCGGCCTCGAGATGTA
*
22578502 TGAGCCAGTGTAAGACCATGTCTGGGACATGACATCGGC
1 -GAGCTAGTGTAAGACCATGTCTGGGACATG-CATCGGC
22578541 ATTATACCCT
Statistics
Matches: 226, Mismatches: 29, Indels: 38
0.77 0.10 0.13
Matches are distributed among these distances:
44 9 0.04
45 18 0.08
46 66 0.29
47 45 0.20
48 18 0.08
49 33 0.15
50 36 0.16
51 1 0.00
ACGTcount: A:0.25, C:0.18, G:0.32, T:0.25
Consensus pattern (48 bp):
GAGCTAGTGTAAGACCATGTCTGGGACATGCATCGGCCTCGAGATGTA
Found at i:22589087 original size:7 final size:7
Alignment explanation
Indices: 22589068--22589121 Score: 99
Period size: 7 Copynumber: 7.6 Consensus size: 7
22589058 TTCAATTCAA
22589068 GTTTAGG
1 GTTTAGG
22589075 GTTTTAGG
1 G-TTTAGG
22589083 GTTTAGG
1 GTTTAGG
22589090 GTTTAGG
1 GTTTAGG
22589097 GTTTAGG
1 GTTTAGG
22589104 GTTTAGG
1 GTTTAGG
22589111 GTTTAGG
1 GTTTAGG
22589118 GTTT
1 GTTT
22589122 GTTTTCAATT
Statistics
Matches: 46, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
7 39 0.85
8 7 0.15
ACGTcount: A:0.13, C:0.00, G:0.41, T:0.46
Consensus pattern (7 bp):
GTTTAGG
Found at i:22592666 original size:50 final size:51
Alignment explanation
Indices: 22592589--22592717 Score: 199
Period size: 50 Copynumber: 2.5 Consensus size: 51
22592579 GACCATGGCA
22592589 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGA-AAAGTG
1 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAA-TG
*
22592640 A-AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAATGACAAATG
1 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATG
* * *
22592690 ACAAGTGAAAAGTGGTAGCTTCAGCTAC
1 ACAAGTGATAAGTGATAGCTTCGGCTAC
22592718 CTGATCCGTG
Statistics
Matches: 72, Mismatches: 4, Indels: 4
0.90 0.05 0.05
Matches are distributed among these distances:
50 45 0.62
51 27 0.38
ACGTcount: A:0.36, C:0.16, G:0.22, T:0.26
Consensus pattern (51 bp):
ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATG
Done.