Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 82679320
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4050000 characters in sequence are not A, C, G, or T
File 76 of 255
Found at i:22592732 original size:31 final size:31
Alignment explanation
Indices: 22592693--22592872 Score: 247
Period size: 31 Copynumber: 5.8 Consensus size: 31
22592683 ACAAATGACA
*
22592693 AGTGAAAAGTGGTAGCTTCAGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* *
22592724 CGTGAAAAGTGGTAGCTTCTGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
22592755 AGTGAAAAGTGGTTG-TTCCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTT-CGGCTACCTGATC
22592786 AGTGAAAAGTGGTAGC-TCTGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTC-GGCTACCTGATC
* * *
22592817 AGTAAAAAATGGTAGCTCCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* *
22592848 AGTGAATAGTGGTAGCTTTGGCTAC
1 AGTGAAAAGTGGTAGCTTCGGCTAC
22592873 AAGTGACAAG
Statistics
Matches: 131, Mismatches: 14, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
30 3 0.02
31 127 0.97
32 1 0.01
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.27
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
Found at i:22592961 original size:47 final size:46
Alignment explanation
Indices: 22592892--22593013 Score: 154
Period size: 47 Copynumber: 2.6 Consensus size: 46
22592882 GTGATTTCCG
* *
22592892 TATAAGACCATATCTGGGATATGGCATCGGTGTGATATATGCTACTA
1 TATAAGACCATATCTGGGATATGGCATCGGTGAGATATATGAT-CTA
* * * *
22592939 TATAAGACCATATCTGGGATATGGCATCAGTGAGATATGTGATTTG
1 TATAAGACCATATCTGGGATATGGCATCGGTGAGATATATGATCTA
* * *
22592985 TGTAAGACCATAGCTGGGCTATGGCATCG
1 TATAAGACCATATCTGGGATATGGCATCG
22593014 ATATATGAAT
Statistics
Matches: 65, Mismatches: 10, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
46 26 0.40
47 39 0.60
ACGTcount: A:0.29, C:0.15, G:0.26, T:0.30
Consensus pattern (46 bp):
TATAAGACCATATCTGGGATATGGCATCGGTGAGATATATGATCTA
Found at i:22593091 original size:42 final size:42
Alignment explanation
Indices: 22592983--22593098 Score: 162
Period size: 42 Copynumber: 2.8 Consensus size: 42
22592973 ATATGTGATT
*
22592983 TGTGTAAGACCATAGCTGGGCTATGGCATCGATATATGAATA
1 TGTGTAAGACCATAGCTGGGCTATGGCATCGATATATGAAGA
* *
22593025 TGTGTAAGACCATAGCCGGGCTATGGCATC-ATTATGTGAAGA
1 TGTGTAAGACCATAGCTGGGCTATGGCATCGA-TATATGAAGA
* **
22593067 TGTGTAAGACCATAGTTGAACTATGGCATCGA
1 TGTGTAAGACCATAGCTGGGCTATGGCATCGA
22593099 GAAAATGAAG
Statistics
Matches: 65, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
41 1 0.02
42 63 0.97
43 1 0.02
ACGTcount: A:0.30, C:0.16, G:0.27, T:0.28
Consensus pattern (42 bp):
TGTGTAAGACCATAGCTGGGCTATGGCATCGATATATGAAGA
Found at i:22595146 original size:13 final size:14
Alignment explanation
Indices: 22595128--22595158 Score: 55
Period size: 13 Copynumber: 2.3 Consensus size: 14
22595118 GCGAGATTTG
22595128 TACAACATAC-ACA
1 TACAACATACAACA
22595141 TACAACATACAACA
1 TACAACATACAACA
22595155 TACA
1 TACA
22595159 TGGCAGACTA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 10 0.59
14 7 0.41
ACGTcount: A:0.55, C:0.29, G:0.00, T:0.16
Consensus pattern (14 bp):
TACAACATACAACA
Found at i:22595148 original size:7 final size:7
Alignment explanation
Indices: 22595128--22595158 Score: 55
Period size: 7 Copynumber: 4.6 Consensus size: 7
22595118 GCGAGATTTG
22595128 TACAACA
1 TACAACA
22595135 TAC-ACA
1 TACAACA
22595141 TACAACA
1 TACAACA
22595148 TACAACA
1 TACAACA
22595155 TACA
1 TACA
22595159 TGGCAGACTA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
6 6 0.26
7 17 0.74
ACGTcount: A:0.55, C:0.29, G:0.00, T:0.16
Consensus pattern (7 bp):
TACAACA
Found at i:22601267 original size:68 final size:64
Alignment explanation
Indices: 22601188--22601402 Score: 200
Period size: 67 Copynumber: 3.3 Consensus size: 64
22601178 GAGTGCACAT
* *
22601188 CATGTGTACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTATGTGTA
1 CATGTATACAAGAGAGCTAC--GAGA-TAT-ATGTAGCTAGGTCGCATGGGTGATACTATGTGTA
22601253 CAC
62 CAC
* * * * * * *
22601256 CATGTATACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGAC
1 CATGTATACAAGAGAGCTACGAGATATATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTAC
22601321 AC
63 AC
* * * * * *
22601323 CATGTAGACAAGAGAGCTACGAGATAAACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCAC
1 CATGTATACAAGAGAGCTACGAGATATA-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACAC
*
22601386 CATGTGTACAAGAGAGC
1 CATGTATACAAGAGAGC
22601403 CGAACTATAT
Statistics
Matches: 120, Mismatches: 23, Indels: 13
0.77 0.15 0.08
Matches are distributed among these distances:
63 19 0.16
64 21 0.17
65 11 0.09
66 18 0.15
67 30 0.25
68 21 0.17
ACGTcount: A:0.31, C:0.17, G:0.28, T:0.23
Consensus pattern (64 bp):
CATGTATACAAGAGAGCTACGAGATATATGTAGCTAGGTCGCATGGGTGATACTATGTGTACAC
Found at i:22604670 original size:40 final size:40
Alignment explanation
Indices: 22604611--22605042 Score: 693
Period size: 40 Copynumber: 10.8 Consensus size: 40
22604601 GAGAATTGAG
* *
22604611 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
*
22604651 AGTGATGTATCCGGACTAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
* *
22604691 AGTGATGTATCCAGACTAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
* *
22604731 AGTGATGTATCCGAACTAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
*
22604771 AGTGATGTATCCGGACTAAGTCCCAAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
*
22604811 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
22604851 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
*
22604891 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTTGTGCT
1 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
* *
22604931 AGTGATGTATCCAGACTAAGTCCCGAAGATCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
* *
22604971 AGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
* * * * *
22605011 GGTGTTATATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATGTATCCGGACTAAGTCCCGAAGAGCA
22605043 ATCATGTTGG
Statistics
Matches: 367, Mismatches: 25, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 367 1.00
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.26
Consensus pattern (40 bp):
AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
Found at i:22609125 original size:47 final size:47
Alignment explanation
Indices: 22609071--22609264 Score: 289
Period size: 47 Copynumber: 4.1 Consensus size: 47
22609061 TTAGGATTTT
** * *
22609071 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
22609118 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
22609165 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * *
22609212 ATGTGGTGAATATGAACATGCATATATGTGGTAAAGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
22609259 ATGTGA
1 ATGTGA
22609265 AATATGTATG
Statistics
Matches: 133, Mismatches: 14, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 133 1.00
ACGTcount: A:0.33, C:0.11, G:0.29, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:22609171 original size:22 final size:22
Alignment explanation
Indices: 22609100--22609171 Score: 58
Period size: 22 Copynumber: 3.1 Consensus size: 22
22609090 GTATATATGA
22609100 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
* * *
22609122 GATGAATG-TGAACAT-GCATATATGT
1 GAT-AAGGCCG-A-ATGGC-CA-ATGT
22609147 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
22609169 GAT
1 GAT
22609172 GAATGTGAGC
Statistics
Matches: 37, Mismatches: 6, Indels: 14
0.65 0.11 0.25
Matches are distributed among these distances:
22 11 0.30
23 9 0.24
24 9 0.24
25 8 0.22
ACGTcount: A:0.33, C:0.14, G:0.29, T:0.24
Consensus pattern (22 bp):
GATAAGGCCGAATGGCCAATGT
Found at i:22609220 original size:25 final size:25
Alignment explanation
Indices: 22609145--22609220 Score: 63
Period size: 23 Copynumber: 3.2 Consensus size: 25
22609135 ATGCATATAT
22609145 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
* * * *
22609170 ATGA-ATGTG-AGCAT-G-CATATGT-
1 GTGATAAG-GCCGAATGGCCA-ATGTG
22609192 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
22609217 GTGA
1 GTGA
22609221 ATATGAACAT
Statistics
Matches: 36, Mismatches: 8, Indels: 14
0.62 0.14 0.24
Matches are distributed among these distances:
22 6 0.17
23 10 0.28
24 10 0.28
25 10 0.28
ACGTcount: A:0.29, C:0.13, G:0.34, T:0.24
Consensus pattern (25 bp):
GTGATAAGGCCGAATGGCCAATGTG
Found at i:22609399 original size:98 final size:96
Alignment explanation
Indices: 22609235--22609418 Score: 298
Period size: 98 Copynumber: 1.9 Consensus size: 96
22609225 GAACATGCAT
* *
22609235 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGCAAAGTCGA
1 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGCAAAGCCGA
22609300 ATGGCTAATGTGAAATATGTATGAGATATGC
66 ATGGCTAATGTGAAATATGTATGAGATATGC
*
22609331 ATATGTGGTAAAGCCGAATGG-TCAATGTGAAATATATATATGAGATATGTATATGTGGTAAAGC
1 ATATGTGGTAAAGCCGAATGGCT-AATGTG-AA-ATATATATGAGATATGTATATGTGGCAAAGC
*
22609395 CGAATGGCTAGTGTGAAATATGTA
63 CGAATGGCTAATGTGAAATATGTA
22609419 GGCGATGTGC
Statistics
Matches: 81, Mismatches: 4, Indels: 4
0.91 0.04 0.04
Matches are distributed among these distances:
95 1 0.01
96 27 0.33
97 2 0.02
98 51 0.63
ACGTcount: A:0.36, C:0.07, G:0.27, T:0.30
Consensus pattern (96 bp):
ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGCAAAGCCGA
ATGGCTAATGTGAAATATGTATGAGATATGC
Found at i:22609434 original size:50 final size:48
Alignment explanation
Indices: 22609234--22609418 Score: 291
Period size: 48 Copynumber: 3.8 Consensus size: 48
22609224 TGAACATGCA
22609234 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
* *
22609282 TATATGTGGCAAAGTCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
* *
22609330 CATATGTGGTAAAGCCGAATGG-TCAATGTGAAATATATATATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCT-AATGTG-AA-ATATGTATGAGATATG
*
22609380 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTA
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
22609419 GGCGATGTGC
Statistics
Matches: 124, Mismatches: 9, Indels: 8
0.88 0.06 0.06
Matches are distributed among these distances:
47 1 0.01
48 77 0.62
49 4 0.03
50 41 0.33
51 1 0.01
ACGTcount: A:0.36, C:0.07, G:0.26, T:0.31
Consensus pattern (48 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
Found at i:22609614 original size:37 final size:37
Alignment explanation
Indices: 22609564--22609635 Score: 119
Period size: 37 Copynumber: 1.9 Consensus size: 37
22609554 GGAAATATAT
*
22609564 TCCGGGTAAGACCCGATGACTAT-GTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATAACT-TCGTGTGGAGATTTTG
22609601 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTT
22609636 CGTCTGAGCT
Statistics
Matches: 33, Mismatches: 1, Indels: 2
0.92 0.03 0.06
Matches are distributed among these distances:
36 1 0.03
37 32 0.97
ACGTcount: A:0.22, C:0.18, G:0.31, T:0.29
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTTTG
Found at i:22611095 original size:51 final size:49
Alignment explanation
Indices: 22611017--22611194 Score: 180
Period size: 51 Copynumber: 3.5 Consensus size: 49
22611007 TGAGAACACA
* *
22611017 TGTGTAGGACTATGTGCAGGCTACTATGTGTTAAGACAGTTTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTATGTG-TAA-ACAGTTTTAGGTCACG
* * * *
22611068 TGTGTAGTACTAAGTGCAGGCTGCTATGTGT-ACCAGATTGTTAGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTAAACAG-TT-TTAGGTCACG
* * * *
22611118 TGTGTAGTACTAAGTGTAGGCTACTATGTGTACCTAATA-TTTTCGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTA---AACAGTTTTAGGTCACG
*
22611169 TATGTAGTACTAAGTGCAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
22611195 CATATATCGA
Statistics
Matches: 105, Mismatches: 16, Indels: 12
0.79 0.12 0.09
Matches are distributed among these distances:
48 3 0.03
49 3 0.03
50 38 0.36
51 57 0.54
52 2 0.02
54 2 0.02
ACGTcount: A:0.25, C:0.15, G:0.26, T:0.34
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTATGTGTAAACAGTTTTAGGTCACG
Found at i:22631781 original size:11 final size:11
Alignment explanation
Indices: 22631765--22631789 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
22631755 ACAAATGATG
22631765 TCACCAAATTT
1 TCACCAAATTT
22631776 TCACCAAATTT
1 TCACCAAATTT
22631787 TCA
1 TCA
22631790 ATGCGAACAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.36, C:0.28, G:0.00, T:0.36
Consensus pattern (11 bp):
TCACCAAATTT
Found at i:22634423 original size:44 final size:44
Alignment explanation
Indices: 22634355--22634472 Score: 145
Period size: 44 Copynumber: 2.7 Consensus size: 44
22634345 ACATAGGATT
* * *
22634355 CCGATATGTGATTTCGTGTAAGACCACA-TCTGGGATG-TTGGCA
1 CCGATATGTGATTACATGTAAGACCACAGTCTGGGA-GAGTGGCA
* *
22634398 GCGATTTGTGATTCACATGTAAGACC-CAGTCTGGGAGAGTGGCA
1 CCGATATGTGATT-ACATGTAAGACCACAGTCTGGGAGAGTGGCA
22634442 CCGATATGTGATTACATGTAAGACCAC-GTCT
1 CCGATATGTGATTACATGTAAGACCACAGTCT
22634473 AGGACATTAT
Statistics
Matches: 64, Mismatches: 7, Indels: 8
0.81 0.09 0.10
Matches are distributed among these distances:
43 30 0.47
44 34 0.53
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.28
Consensus pattern (44 bp):
CCGATATGTGATTACATGTAAGACCACAGTCTGGGAGAGTGGCA
Found at i:22636903 original size:21 final size:22
Alignment explanation
Indices: 22636877--22636917 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
22636867 CATTTGATAC
22636877 AGGGGC-ACACGCCCGTGTGGA
1 AGGGGCAACACGCCCGTGTGGA
22636898 AGGGGCAACACGCCCGTGTG
1 AGGGGCAACACGCCCGTGTG
22636918 ATCAATTTGA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 6 0.32
22 13 0.68
ACGTcount: A:0.20, C:0.29, G:0.41, T:0.10
Consensus pattern (22 bp):
AGGGGCAACACGCCCGTGTGGA
Found at i:22642352 original size:40 final size:40
Alignment explanation
Indices: 22642113--22642338 Score: 280
Period size: 40 Copynumber: 5.7 Consensus size: 40
22642103 TTGAATGATG
* * * * *
22642113 TCCGGGCTAATTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
22642153 TCCGGACTAAGAT-CCGAAGGCATTTGTACGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
22642193 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
22642233 TCTGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
22642273 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
22642314 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
22642339 AACGAGTAGC
Statistics
Matches: 168, Mismatches: 14, Indels: 8
0.88 0.07 0.04
Matches are distributed among these distances:
39 1 0.01
40 158 0.94
41 9 0.05
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.27
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:22644030 original size:39 final size:39
Alignment explanation
Indices: 22643985--22644103 Score: 193
Period size: 39 Copynumber: 3.1 Consensus size: 39
22643975 ATGCAAGACA
*
22643985 CTAGAAATGTATCCAGGCTAAAGTCCCGCAGGCTTCGTG
1 CTAGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
** *
22644024 CTAGAAACATATCCGGGCTAAAGTCCTGCAGGCTTCGTG
1 CTAGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
*
22644063 CTAGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTTGTG
1 CTAGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
22644102 CT
1 CT
22644104 GGTAATATAA
Statistics
Matches: 72, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 72 1.00
ACGTcount: A:0.24, C:0.25, G:0.26, T:0.24
Consensus pattern (39 bp):
CTAGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
Found at i:22646091 original size:46 final size:48
Alignment explanation
Indices: 22646041--22646131 Score: 123
Period size: 46 Copynumber: 1.9 Consensus size: 48
22646031 CATTGACTTA
* * *
22646041 CGTCTCGAGGCCGATG-CATGTCCCAAAC-ATGTCTTACATTAGCACT
1 CGTCTCAAGGCCGATGCCATGTCCCAAACAAGGTCTTACACTAGCACT
* *
22646087 CGTCTCAATGCCGATGCCATGTCCCAGACAAGGTCTTACACTAGC
1 CGTCTCAAGGCCGATGCCATGTCCCAAACAAGGTCTTACACTAGC
22646132 TCACACAAAT
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
46 14 0.37
47 11 0.29
48 13 0.34
ACGTcount: A:0.24, C:0.32, G:0.20, T:0.24
Consensus pattern (48 bp):
CGTCTCAAGGCCGATGCCATGTCCCAAACAAGGTCTTACACTAGCACT
Found at i:22654137 original size:38 final size:38
Alignment explanation
Indices: 22654094--22654172 Score: 133
Period size: 38 Copynumber: 2.1 Consensus size: 38
22654084 TTTGACAAAA
*
22654094 TGACCATTTTACCCCTA-GCCCTGAAAATTGATTTTTAT
1 TGACCATTTTACCCCTAGGCCC-GAAAATTAATTTTTAT
22654132 TGACCATTTTACCCCTAGGCCCGAAAATTAATTTTTAT
1 TGACCATTTTACCCCTAGGCCCGAAAATTAATTTTTAT
22654170 TGA
1 TGA
22654173 ATTTTTTTAT
Statistics
Matches: 39, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
38 35 0.90
39 4 0.10
ACGTcount: A:0.28, C:0.23, G:0.11, T:0.38
Consensus pattern (38 bp):
TGACCATTTTACCCCTAGGCCCGAAAATTAATTTTTAT
Found at i:22664442 original size:40 final size:40
Alignment explanation
Indices: 22664261--22664442 Score: 278
Period size: 40 Copynumber: 4.6 Consensus size: 40
22664251 CAACCAAGTA
* ** *
22664261 CCTTCGGGATTTAG-CCGGACATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGTTATAG-TAACTCGCACAAATG
*
22664300 CCTTCGGGACTTAGCCCGATTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
22664340 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
*
22664380 CCTTCGGGACTTATCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
*
22664420 CCTTCGGGACTTAGCCCAGTTAT
1 CCTTCGGGACTTAGCCCGGTTAT
22664443 CATCCGAATA
Statistics
Matches: 132, Mismatches: 9, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
39 14 0.11
40 118 0.89
ACGTcount: A:0.24, C:0.28, G:0.21, T:0.26
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
Found at i:22672378 original size:40 final size:40
Alignment explanation
Indices: 22672305--22672459 Score: 260
Period size: 40 Copynumber: 3.9 Consensus size: 40
22672295 AGACATAGCT
* *
22672305 ACTCGCTCAGATGCCTTCG-GACTTAGCCCGGTTATAGTA
1 ACTCGCACAAATGCCTTCGAGACTTAGCCCGGTTATAGTA
22672344 ACTCGCACAAATGCCTTCGAGACTTAGCCCGGTTATAGTA
1 ACTCGCACAAATGCCTTCGAGACTTAGCCCGGTTATAGTA
*
22672384 ACTCAG-ACAAATGCCTTCGGGACTTAGCCCGGTTATAGTA
1 ACTC-GCACAAATGCCTTCGAGACTTAGCCCGGTTATAGTA
22672424 ACTCGCACAAATGCCTTCGAGACTTAGCCCGGTTAT
1 ACTCGCACAAATGCCTTCGAGACTTAGCCCGGTTAT
22672460 CATCTGAATA
Statistics
Matches: 109, Mismatches: 4, Indels: 5
0.92 0.03 0.04
Matches are distributed among these distances:
39 18 0.17
40 90 0.83
41 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGAGACTTAGCCCGGTTATAGTA
Found at i:22676853 original size:44 final size:46
Alignment explanation
Indices: 22676781--22676905 Score: 155
Period size: 45 Copynumber: 2.7 Consensus size: 46
22676771 CACCTTTTGT
*
22676781 AGCGATGCATGTCCCAGACATGTCTTACACTGGCT-TACATCTCGAG
1 AGCGATGCATGT-CCAGACATGTCTTACACTGGCTCTACATCTCAAG
* * *
22676827 GGCGATGCATGTCC-GACATGTCTTACACTGGCTCTCCATCTCAAT
1 AGCGATGCATGTCCAGACATGTCTTACACTGGCTCTACATCTCAAG
* * *
22676872 ACCGATGCATGTCCAGGCATGGTCTTACATTGGC
1 AGCGATGCATGTCCAGACAT-GTCTTACACTGGC
22676906 CTCATAATGT
Statistics
Matches: 68, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
44 19 0.28
45 22 0.32
46 15 0.22
47 12 0.18
ACGTcount: A:0.22, C:0.29, G:0.22, T:0.27
Consensus pattern (46 bp):
AGCGATGCATGTCCAGACATGTCTTACACTGGCTCTACATCTCAAG
Found at i:22688531 original size:17 final size:17
Alignment explanation
Indices: 22688509--22688549 Score: 73
Period size: 17 Copynumber: 2.4 Consensus size: 17
22688499 TCTTAAAGAG
22688509 AAATTTTCCCAATTTCT
1 AAATTTTCCCAATTTCT
22688526 AAATTTTCCCAATTTCT
1 AAATTTTCCCAATTTCT
*
22688543 AAGTTTT
1 AAATTTT
22688550 GGACAAAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.29, C:0.20, G:0.02, T:0.49
Consensus pattern (17 bp):
AAATTTTCCCAATTTCT
Found at i:22707626 original size:96 final size:96
Alignment explanation
Indices: 22707450--22707779 Score: 351
Period size: 98 Copynumber: 3.4 Consensus size: 96
22707440 AGGGTAAGAT
* * * *
22707450 GCCGATGCCACGTCCCAGACATGGTCTTACACTGGCTCTCATATTTCAGTGCCGATTGCATGTTC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCCCATA--TCAGTGCCGATGGCATGTTC
*
22707515 CAAACATGGTCTTACACTAGCCCACATGTCGAG
64 CAAACATGGTCTTACACTAGCCCACATATCGAG
* * *
22707548 GCCGATGCCATGTCCCAAACATAGTCTTACACTAGCTCCCATATCAATGCCGATGGCATGTTCCA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCCCATATCAGTGCCGATGGCATGTTCCA
* * *
22707613 AACATGGTCTTACACTGGCTCATATATCGAG
66 AACATGGTCTTACACTAGCCCACATATCGAG
* * * * *
22707644 GCTGATGCCATGTCCCAGATATGGTCTTACACTAGCTCTCCTACATCGGTGCCGATGCCATG-TC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTC-CC-ATATCAGTGCCGATGGCATGTTC
* * * ** *
22707708 GCAGACATGGTCTTACA-TTG-ACACATATAATAAT
64 -CAAACATGGTCTTACACTAGCCCACATAT--CGAG
* * *
22707742 GCCGATGCCATGTTCCAAACATGGTCTTACACTGGCTC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTC
22707780 ATATATTGAG
Statistics
Matches: 196, Mismatches: 31, Indels: 10
0.83 0.13 0.04
Matches are distributed among these distances:
96 87 0.44
97 6 0.03
98 103 0.53
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (96 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCCCATATCAGTGCCGATGGCATGTTCCA
AACATGGTCTTACACTAGCCCACATATCGAG
Found at i:22707721 original size:146 final size:142
Alignment explanation
Indices: 22707448--22707820 Score: 432
Period size: 146 Copynumber: 2.6 Consensus size: 142
22707438 AAAGGGTAAG
* * * * *
22707448 ATGCCGATGCCACGTCCCAGACATGGTCTTACACTGGCTCTCATATTTC-AGTGCCGATTG-CAT
1 ATGCCGATGCCATGTTCCAAACATGGTCTTACACTGG--CTCATATATCGAG-GCTGA-TGCCAT
* *
22707511 GTTCCAAACATGGTCTTACACTAGCCCACATGTCGAGGCCGATGCCATGTCCCAAACATAGTCTT
62 GTCCCAGACATGGTCTTACACTAGCCCACA-GTCGAGGCCGATGCCATGTCCCAAACATAGTCTT
* *
22707576 ACACTAGCTCCCATAT-CA
126 ACA-TAG-ACACATATACA
*
22707594 ATGCCGATGGCATGTTCCAAACATGGTCTTACACTGGCTCATATATCGAGGCTGATGCCATGTCC
1 ATGCCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCATATATCGAGGCTGATGCCATGTCC
* * * *
22707659 CAGATATGGTCTTACACTAGCTCTCCTACA-TCG-GTGCCGATGCCATGTCGCAGACATGGTCTT
66 CAGACATGGTCTTACACTAG--C-CC-ACAGTCGAG-GCCGATGCCATGTCCCAAACATAGTCTT
* *
22707722 ACATTGACACATATAATA
126 ACATAGACACATAT-ACA
*
22707740 ATGCCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCATATATTGAGGCTGATGCCATGTCC
1 ATGCCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCATATATCGAGGCTGATGCCATGTCC
*
22707805 TAGACATGGTCTTACA
66 CAGACATGGTCTTACA
22707821 TTGGCTCACA
Statistics
Matches: 198, Mismatches: 20, Indels: 18
0.84 0.08 0.08
Matches are distributed among these distances:
143 2 0.01
144 43 0.22
145 5 0.03
146 143 0.72
147 2 0.01
148 3 0.02
ACGTcount: A:0.25, C:0.28, G:0.20, T:0.28
Consensus pattern (142 bp):
ATGCCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCATATATCGAGGCTGATGCCATGTCC
CAGACATGGTCTTACACTAGCCCACAGTCGAGGCCGATGCCATGTCCCAAACATAGTCTTACATA
GACACATATACA
Found at i:22707814 original size:194 final size:194
Alignment explanation
Indices: 22707453--22707828 Score: 438
Period size: 194 Copynumber: 1.9 Consensus size: 194
22707443 GTAAGATGCC
* **
22707453 GATGCCACGTCCCAGACATGGTCTTACACTGGCTCTCATATTTCAGTGCCGATTGCATGTTCCAA
1 GATGCCACGTCCCAGACATGGTCTTACACTAGCTCTCATACATCAGTGCCGATTGCATGTTCCAA
* * *
22707518 ACATGGTCTTACACTAGCCCACATGTCGAGGCCGATGCCATGTCCCAAACATAGTCTTACACTAG
66 ACATGGTCTTACACTAGCACACATATCAAGGCCGATGCCATGTCCCAAACATAGTCTTACACTAG
* * *
22707583 CTCCCATATCAATGCCGATGGCATGTTCCAAACATGGTCTTACACTGGCTCATATATCGAGGCT
131 CTCACATATCAAGGCCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCATATATCGAGGCT
* * * *
22707647 GATGCCATGTCCCAGATATGGTCTTACACTAGCTCTCCTACATCGGTGCCGA-TGCCATG-TCGC
1 GATGCCACGTCCCAGACATGGTCTTACACTAGCTCTCATACATCAGTGCCGATTG-CATGTTC-C
* * * * * *
22707710 AGACATGGTCTTACA-TTG-ACACATATAATAATGCCGATGCCATGTTCCAAACATGGTCTTACA
64 AAACATGGTCTTACACTAGCACACATAT--CAAGGCCGATGCCATGTCCCAAACATAGTCTTACA
* * ** * * *
22707773 CTGGCTCATATATTGAGGCTGATGCCATG-TCCTAGACATGGTCTTACATTGGCTCA
127 CTAGCTCACATATCAAGGCCGATGCCATGTTCC-AAACATGGTCTTACACTGGCTCA
22707829 CACAACTCTA
Statistics
Matches: 151, Mismatches: 26, Indels: 10
0.81 0.14 0.05
Matches are distributed among these distances:
192 6 0.04
193 9 0.06
194 136 0.90
ACGTcount: A:0.25, C:0.28, G:0.20, T:0.28
Consensus pattern (194 bp):
GATGCCACGTCCCAGACATGGTCTTACACTAGCTCTCATACATCAGTGCCGATTGCATGTTCCAA
ACATGGTCTTACACTAGCACACATATCAAGGCCGATGCCATGTCCCAAACATAGTCTTACACTAG
CTCACATATCAAGGCCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCATATATCGAGGCT
Found at i:22707826 original size:48 final size:47
Alignment explanation
Indices: 22707450--22707828 Score: 316
Period size: 48 Copynumber: 7.8 Consensus size: 47
22707440 AGGGTAAGAT
* * *
22707450 GCCGATGCCACGTCCCAGACATGGTCTTACACTGGCTCTCATATTTC-AG
1 GCCGATGCCATGT-CCAAACATGGTCTTACACTGG--CTCATATATCGAG
* * * *
22707499 TGCCGATTG-CATGTTCCAAACATGGTCTTACACTAGCCCACATGTCGAG
1 -GCCGA-TGCCATG-TCCAAACATGGTCTTACACTGGCTCATATATCGAG
* * ** * *
22707548 GCCGATGCCATGTCCCAAACATAGTCTTACACTAGCTCCCATATCAAT
1 GCCGATGCCATGT-CCAAACATGGTCTTACACTGGCTCATATATCGAG
*
22707596 GCCGATGGCATGTTCCAAACATGGTCTTACACTGGCTCATATATCGAG
1 GCCGATGCCATG-TCCAAACATGGTCTTACACTGGCTCATATATCGAG
* * * * * *
22707644 GCTGATGCCATGTCCCAGATATGGTCTTACACTAGCTCTCCTACATCG-G
1 GCCGATGCCATGT-CCAAACATGGTCTTACACT-G-GCTCATATATCGAG
* * * * * *
22707693 TGCCGATGCCATGTCGCAGACATGGTCTTACATTGACACATATAAT-AAT
1 -GCCGATGCCATGTC-CAAACATGGTCTTACACTGGCTCATAT-ATCGAG
*
22707742 GCCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCATATATTGAG
1 GCCGATGCCATG-TCCAAACATGGTCTTACACTGGCTCATATATCGAG
* * *
22707790 GCTGATGCCATGTCCTAGACATGGTCTTACATTGGCTCA
1 GCCGATGCCATGTCC-AAACATGGTCTTACACTGGCTCA
22707829 CACAACTCTA
Statistics
Matches: 269, Mismatches: 44, Indels: 34
0.78 0.13 0.10
Matches are distributed among these distances:
47 9 0.03
48 182 0.68
49 11 0.04
50 64 0.24
51 3 0.01
ACGTcount: A:0.25, C:0.28, G:0.20, T:0.28
Consensus pattern (47 bp):
GCCGATGCCATGTCCAAACATGGTCTTACACTGGCTCATATATCGAG
Found at i:22708844 original size:17 final size:17
Alignment explanation
Indices: 22708822--22708862 Score: 73
Period size: 17 Copynumber: 2.4 Consensus size: 17
22708812 TAAAACTTTT
22708822 GCCCTTTATGCGATTTA
1 GCCCTTTATGCGATTTA
22708839 GCCCTTTATGCGATTTA
1 GCCCTTTATGCGATTTA
*
22708856 GTCCTTT
1 GCCCTTT
22708863 TTCGCAATTA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.15, C:0.24, G:0.17, T:0.44
Consensus pattern (17 bp):
GCCCTTTATGCGATTTA
Found at i:22713204 original size:48 final size:48
Alignment explanation
Indices: 22713132--22713366 Score: 229
Period size: 48 Copynumber: 4.9 Consensus size: 48
22713122 TAATATCAAT
* *
22713132 GCCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATATCGAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCGAG
* * * * *
22713180 GCTGATGCCATGTCCCAGATATGGTCTTACACTAGCTCTTATACATCG-G
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTC--ACATATCGAG
* * * * * * * *
22713229 TGCCGATGCCATGTCCTAGACATGGTCTTACATTGACACATATAACAAT
1 -GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCGAG
* * * * *
22713278 GCTGAAGCCATGTTCCAAACATGGTCTTACACTGGCTCACATATTGAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCGAG
* * *
22713326 GCCAATGCCATGTCTCAGATATGGTCTTACACTGGCTCACA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACA
22713367 CAACCCTAGT
Statistics
Matches: 145, Mismatches: 38, Indels: 8
0.76 0.20 0.04
Matches are distributed among these distances:
48 107 0.74
49 1 0.01
50 37 0.26
ACGTcount: A:0.26, C:0.27, G:0.20, T:0.28
Consensus pattern (48 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCGAG
Found at i:22713302 original size:98 final size:98
Alignment explanation
Indices: 22713131--22713315 Score: 237
Period size: 98 Copynumber: 1.9 Consensus size: 98
22713121 CTAATATCAA
* * * * *
22713131 TGCCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATATCGAGGCTGATGCCATGTCCC
1 TGCCGATGCCATGTTCCAAACATGGTCTTACACTGACACACATAACAAGGCTGAAGCCATGTCCC
* *
22713196 AGATATGGTCTTACACTAGCTCTTATACATCGG
66 AAACATGGTCTTACACTAGCTCTTATACATCGG
* * * * *
22713229 TGCCGATGCCATG-TCCTAGACATGGTCTTACATTGACACATATAACAATGCTGAAGCCATGTTC
1 TGCCGATGCCATGTTCC-AAACATGGTCTTACACTGACACACATAACAAGGCTGAAGCCATGTCC
*
22713293 CAAACATGGTCTTACACTGGCTC
65 CAAACATGGTCTTACACTAGCTC
22713316 ACATATTGAG
Statistics
Matches: 73, Mismatches: 13, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
97 3 0.04
98 70 0.96
ACGTcount: A:0.25, C:0.27, G:0.19, T:0.28
Consensus pattern (98 bp):
TGCCGATGCCATGTTCCAAACATGGTCTTACACTGACACACATAACAAGGCTGAAGCCATGTCCC
AAACATGGTCTTACACTAGCTCTTATACATCGG
Found at i:22727934 original size:17 final size:17
Alignment explanation
Indices: 22727912--22727945 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
22727902 CTACTAGGAT
22727912 ATCAATTAGTACGAGTG
1 ATCAATTAGTACGAGTG
*
22727929 ATCAATTAGTATGAGTG
1 ATCAATTAGTACGAGTG
22727946 TATTTTCAGC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.35, C:0.09, G:0.24, T:0.32
Consensus pattern (17 bp):
ATCAATTAGTACGAGTG
Found at i:22732063 original size:55 final size:53
Alignment explanation
Indices: 22731976--22732230 Score: 218
Period size: 55 Copynumber: 4.8 Consensus size: 53
22731966 AGTAAGGTTT
* *
22731976 AAGGATACCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAACGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGC-ATTGGTAA-GTTTCTAAGGC
* * * * *
22732031 AAGGATGCCATGTAATACCATGTCAAGACATGGCATTGATAAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTT--TCTAAGGC
* * *
22732086 AA--ATGTCTCATGTAAGACCATGCCAAGGCATGGCATTGGTGAG-TTCATAAGGC
1 AAGGAT-AC-CATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTC-TAAGGC
* * * *
22732139 AAGGATACTATGTAAGACCATGTCGAGACATGGCAGTGGTAAGTTTC-AA---
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTCTAAGGC
* * * ** *
22732188 AAGGATACCACGTAAAACCATGACAATTCATGGCAATGGTAAG
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAG
22732231 GTACCCATGT
Statistics
Matches: 163, Mismatches: 29, Indels: 22
0.76 0.14 0.10
Matches are distributed among these distances:
49 35 0.21
52 3 0.02
53 42 0.26
54 13 0.08
55 70 0.43
ACGTcount: A:0.35, C:0.18, G:0.24, T:0.23
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTCTAAGGC
Found at i:22732182 original size:108 final size:110
Alignment explanation
Indices: 22731984--22732183 Score: 298
Period size: 108 Copynumber: 1.8 Consensus size: 110
22731974 TTAAGGATAC
* *
22731984 CATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAACGCAAGGATGCCATGTAATAC
1 CATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAACGCAAGGATACCATGTAAGAC
*
22732049 CATGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAATGTCT
66 CATGTCAAGACATGGCAGTGATAAGTTACTATAAGGCAAATGTCT
* * *
22732094 CATGTAAGACCATGCCAAGGCATGGC-ATTGGTGA-G-TTCATAAGGCAAGGATACTATGTAAGA
1 CATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTC-TAACGCAAGGATACCATGTAAGA
* *
22732156 CCATGTCGAGACATGGCAGTGGTAAGTT
65 CCATGTCAAGACATGGCAGTGATAAGTT
22732184 TCAAAAGGAT
Statistics
Matches: 81, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
107 3 0.04
108 45 0.56
109 7 0.09
110 26 0.32
ACGTcount: A:0.33, C:0.17, G:0.26, T:0.24
Consensus pattern (110 bp):
CATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAACGCAAGGATACCATGTAAGAC
CATGTCAAGACATGGCAGTGATAAGTTACTATAAGGCAAATGTCT
Found at i:22732443 original size:16 final size:16
Alignment explanation
Indices: 22732422--22732452 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
22732412 ATAAATTTGA
22732422 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
22732438 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
22732453 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:22739839 original size:53 final size:52
Alignment explanation
Indices: 22739672--22739929 Score: 189
Period size: 53 Copynumber: 4.8 Consensus size: 52
22739662 GGATACCATA
* * *
22739672 TAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTC-TAACGCAAGGATGC-CATG
1 TAAGACCATACCAAGGCATGGC-ATTGGTAA-G-TTCATAAGGAAAGG-T-CTCATG
* ** * * *
22739727 TAATACCATGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAATGTCTCATG
1 TAAGACCATACCAAGGCATGGCATTGGTAAGTT-C-ATAAGG-AAAGGTCTCATG
*
22739782 TAAGACCATACCAAGGCATGGCATTGGTGAGTTCATAAGGTAAAGGTCTCATG
1 TAAGACCATACCAAGGCATGGCATTGGTAAGTTCATAAGG-AAAGGTCTCATG
* * * * *
22739835 TAAGACCATACAAACGCATGGCATTGGTGAGTTCACAAGGCAAGGATAC-CATG
1 TAAGACCATACCAAGGCATGGCATTGGTAAGTTCATAAGGAAAGG-T-CTCATG
* ** * * * *
22739888 TATGACCATGTCGAGACATGGCAATGGTAAGTTTCAAAAGGA
1 TAAGACCATACCAAGGCATGGCATTGGTAAG-TTCATAAGGA
22739930 TACCACGTAA
Statistics
Matches: 165, Mismatches: 30, Indels: 17
0.78 0.14 0.08
Matches are distributed among these distances:
52 6 0.04
53 83 0.50
54 18 0.11
55 55 0.33
56 3 0.02
ACGTcount: A:0.34, C:0.18, G:0.24, T:0.24
Consensus pattern (52 bp):
TAAGACCATACCAAGGCATGGCATTGGTAAGTTCATAAGGAAAGGTCTCATG
Found at i:22740147 original size:16 final size:16
Alignment explanation
Indices: 22740126--22740156 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
22740116 ATAAATTTGA
22740126 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
22740142 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
22740157 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:22741421 original size:23 final size:23
Alignment explanation
Indices: 22741395--22741439 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
22741385 GGGTGTTACA
22741395 TAGCTCGTAAGAGCTTACTGTTT
1 TAGCTCGTAAGAGCTTACTGTTT
** *
22741418 TAGCTCGTTGGAGCTTATTGTT
1 TAGCTCGTAAGAGCTTACTGTT
22741440 CAGCATATTA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.18, C:0.16, G:0.24, T:0.42
Consensus pattern (23 bp):
TAGCTCGTAAGAGCTTACTGTTT
Found at i:22746800 original size:40 final size:40
Alignment explanation
Indices: 22746763--22746947 Score: 189
Period size: 40 Copynumber: 4.7 Consensus size: 40
22746753 GCTACTCGTT
* *
22746763 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGAAACTCGCA
*
22746803 CAAATGCCTTCGGGACTTAACCCGGATTTAGAAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGAAACTCGCA
* * * *
22746843 CAAATGCCTTCGGG-CTTAGCCCAGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGAAACTCGCA
* * * * ** *
22746882 CAAATGTCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGAAAC-TCGCA
22746923 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
22746948 CATCATTCAA
Statistics
Matches: 121, Mismatches: 19, Indels: 10
0.81 0.13 0.07
Matches are distributed among these distances:
38 2 0.02
39 30 0.25
40 76 0.63
41 13 0.11
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGAAACTCGCA
Found at i:22746824 original size:79 final size:79
Alignment explanation
Indices: 22746730--22746910 Score: 195
Period size: 79 Copynumber: 2.3 Consensus size: 79
22746720 AAATCACGTA
* ** ** **
22746730 CCTTCGGAATTTAA-CCGGATATAGCTACTCGTTCAAATGCCTTCGGGACATAGCCC-GGTTATA
1 CCTTCGGAACTTAACCCGGATATAGAAACTCGCACAAATGCCTTCGGG-CATAGCCCAGAAT-TA
22746793 GTAACTCGCACAAATG
64 GTAACTCGCACAAATG
* * *
22746809 CCTTCGGGACTTAACCCGGATTTAGAAACTCGCACAAATGCCTTCGGGCTTAGCCCAGAATTAGT
1 CCTTCGGAACTTAACCCGGATATAGAAACTCGCACAAATGCCTTCGGGCATAGCCCAGAATTAGT
*
22746874 ATCTCGCACAAATG
66 AACTCGCACAAATG
* * **
22746888 TCTTCGGATCTTAGTCCGGATAT
1 CCTTCGGAACTTAACCCGGATAT
22746911 GGTCACTTAG
Statistics
Matches: 83, Mismatches: 17, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
79 53 0.64
80 30 0.36
ACGTcount: A:0.27, C:0.26, G:0.20, T:0.27
Consensus pattern (79 bp):
CCTTCGGAACTTAACCCGGATATAGAAACTCGCACAAATGCCTTCGGGCATAGCCCAGAATTAGT
AACTCGCACAAATG
Found at i:22749617 original size:27 final size:27
Alignment explanation
Indices: 22749587--22749763 Score: 187
Period size: 27 Copynumber: 6.6 Consensus size: 27
22749577 ATATTGAGTC
* * * *
22749587 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
22749614 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
22749641 CG-ACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
22749668 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
22749695 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
* *
22749722 CGCACACTTAGTGCAATATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
22749749 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
22749764 GTACAATTTA
Statistics
Matches: 127, Mismatches: 19, Indels: 8
0.82 0.12 0.05
Matches are distributed among these distances:
26 21 0.17
27 86 0.68
28 20 0.16
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.28
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:22749699 original size:81 final size:81
Alignment explanation
Indices: 22749608--22749762 Score: 215
Period size: 81 Copynumber: 1.9 Consensus size: 81
22749598 TGCTATATAA
* *
22749608 TCAACTCGCACACTTAGTGC-TACGTAATCAAATCG-ACACTTAGTGCTACATAGTCAAACTCGC
1 TCAACTCGCACACTTAGTGCAT-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGC
22749671 ACACTTAGTGCCGCATGG
64 ACACTTAGTGCCGCATGG
* * ** *
22749689 TCAATTCGCACACTTAGTGCATCATATTCATTTCGCACACTTAGTGCAATATAGTCAAATCGCAC
1 TCAACTCGCACACTTAGTGCATCATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
22749754 ACTTAGTGC
66 ACTTAGTGC
22749763 TGTACAATTT
Statistics
Matches: 65, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
81 43 0.66
82 22 0.34
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.28
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCATCATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:22757654 original size:27 final size:27
Alignment explanation
Indices: 22757624--22757798 Score: 194
Period size: 27 Copynumber: 6.6 Consensus size: 27
22757614 ATATTGAGTC
* * * *
22757624 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
22757651 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
22757678 CGCACACTTAGTGCTACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
** * *
22757705 -GCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
22757731 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
22757758 CGCACACTTAGTGC-AAATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
22757784 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
22757799 GTACAATTTA
Statistics
Matches: 127, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
26 43 0.34
27 84 0.66
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:22757734 original size:53 final size:54
Alignment explanation
Indices: 22757624--22757798 Score: 194
Period size: 53 Copynumber: 3.3 Consensus size: 54
22757614 ATATTGAGTC
* * * * * *
22757624 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCCACATAGTCAAAT
* * * *
22757678 CGCACACTTAGTGCTACATAGTCAAAT-GCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCCACATAGTCAAAT
* ** *
22757731 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTG-CAAATAGTCAAAT
1 CGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCCACATAGTCAAAT
22757784 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
22757799 GTACAATTTA
Statistics
Matches: 101, Mismatches: 17, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
52 1 0.01
53 65 0.64
54 35 0.35
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.27
Consensus pattern (54 bp):
CGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCCACATAGTCAAAT
Found at i:22757761 original size:80 final size:80
Alignment explanation
Indices: 22757645--22757797 Score: 220
Period size: 80 Copynumber: 1.9 Consensus size: 80
22757635 TGCTATATAA
* *
22757645 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAAT-GCAC
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGC-AAATAGTCAAATCGCAC
22757709 ACTTAGTGCCGCATGG
65 ACTTAGTGCCGCATGG
* * **
22757725 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAAATAGTCAAATCGCAC
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAAATAGTCAAATCGCAC
22757789 ACTTAGTGC
65 ACTTAGTGC
22757798 TGTACAATTT
Statistics
Matches: 65, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
79 12 0.18
80 53 0.82
ACGTcount: A:0.30, C:0.27, G:0.16, T:0.27
Consensus pattern (80 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAAATAGTCAAATCGCACA
CTTAGTGCCGCATGG
Found at i:22769720 original size:40 final size:40
Alignment explanation
Indices: 22769523--22769739 Score: 239
Period size: 40 Copynumber: 5.5 Consensus size: 40
22769513 CGGATGATAA
* * *
22769523 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATA-T
* *
22769563 CCGGGCTAAG-CCTGAAGGCAATT-GTGCGAGTTATTATA-
1 CCGGGCTAAGTCCCGAAGGC-ATTCGTGCGAGTTACTATAT
* * *
22769601 CCGGGGCTAATTCCCGAAGGCATTCGTGCGAGTTATTATGT
1 CC-GGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
*
22769642 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
* *
22769682 CCGGGCTATGTCCCGAAGGCATTCGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTA-CTATAT
* *
22769722 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
22769740 TACTTGGCTT
Statistics
Matches: 153, Mismatches: 17, Indels: 15
0.83 0.09 0.08
Matches are distributed among these distances:
38 2 0.01
39 43 0.28
40 106 0.69
41 2 0.01
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
Found at i:22769725 original size:80 final size:79
Alignment explanation
Indices: 22769522--22769739 Score: 234
Period size: 79 Copynumber: 2.8 Consensus size: 79
22769512 TCGGATGATA
* * * *
22769522 ACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGT-GACTA-ATTCCGGGCTAAG-CCTGAAGGCAA
1 ACCGGGCTATGTCCCGAAGGCATTCGTGCGAGTAG-CTATA-TCCGGGCTAAGTCCCGAAGGCAA
*
22769584 TTGTGCGAGTTATTAT
64 TTGTGCGAGTTACTAT
* *
22769600 ACCGGGGCTAAT-TCCCGAAGGCATTCGTGCGAGTTA-TTATGTCCGGGCTAAGTCCCGAAGGC-
1 ACC-GGGCT-ATGTCCCGAAGGCATTCGTGCGAG-TAGCTATATCCGGGCTAAGTCCCGAAGGCA
22769662 ATTGGTGCGAGTTACTAT
63 ATT-GTGCGAGTTACTAT
* * *
22769680 ATCCGGGCTATGTCCCGAAGGCATTCGAGCGAGTAGCTATATCC-GGTTAAATCCCGAAGG
1 A-CCGGGCTATGTCCCGAAGGCATTCGTGCGAGTAGCTATATCCGGGCTAAGTCCCGAAGG
22769740 TACTTGGCTT
Statistics
Matches: 118, Mismatches: 12, Indels: 19
0.79 0.08 0.13
Matches are distributed among these distances:
78 3 0.03
79 58 0.49
80 55 0.47
81 2 0.02
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.25
Consensus pattern (79 bp):
ACCGGGCTATGTCCCGAAGGCATTCGTGCGAGTAGCTATATCCGGGCTAAGTCCCGAAGGCAATT
GTGCGAGTTACTAT
Found at i:22769735 original size:119 final size:118
Alignment explanation
Indices: 22769523--22769739 Score: 271
Period size: 119 Copynumber: 1.8 Consensus size: 118
22769513 CGGATGATAA
* * * *
22769523 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAGCCTGAAGGCAATTGT
1 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTGACTAATTCCGGGCTAAGCCCGAAGGCAATTGA
* *
22769588 GCGAGTTATTATACCGGGGCTAATTCCCGAAGGCATTCGTGCGAGTTATTATGT
66 GCGAGTTACTATACC-GGGCTAAATCCCGAAGGCATTCGTGCGAGTTATTATGT
* *
22769642 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACT-ATATCCGGGCTATGTCCCGAAGGC-ATT
1 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTGACTAAT-TCCGGGCTAAG-CCCGAAGGCAATT
*
22769705 CGAGCGAG-TAGCTATATCC-GGTTAAATCCCGAAGG
64 -GAGCGAGTTA-CTATA-CCGGGCTAAATCCCGAAGG
22769740 TACTTGGCTT
Statistics
Matches: 84, Mismatches: 9, Indels: 10
0.82 0.09 0.10
Matches are distributed among these distances:
118 2 0.02
119 62 0.74
120 18 0.21
121 2 0.02
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.25
Consensus pattern (118 bp):
CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTGACTAATTCCGGGCTAAGCCCGAAGGCAATTGA
GCGAGTTACTATACCGGGCTAAATCCCGAAGGCATTCGTGCGAGTTATTATGT
Found at i:22772019 original size:28 final size:28
Alignment explanation
Indices: 22771987--22772114 Score: 175
Period size: 29 Copynumber: 4.5 Consensus size: 28
22771977 ATAGTAAGTC
*
22771987 CGCACACTTAGTGTTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
22772015 CGCACACTTAGTGCTTACATAATCAAACT
1 CGCACACTTAGTGC-TATATAATCAAACT
22772044 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* ** * *
22772072 TGCACACTTAGTGCTATGCAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
22772101 CGCACACTTAGTGC
1 CGCACACTTAGTGC
22772115 CAATCTCATG
Statistics
Matches: 89, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
28 44 0.49
29 45 0.51
ACGTcount: A:0.33, C:0.26, G:0.12, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:22772077 original size:57 final size:57
Alignment explanation
Indices: 22771986--22772114 Score: 188
Period size: 57 Copynumber: 2.3 Consensus size: 57
22771976 TATAGTAAGT
*
22771986 CCGCACACTTAGTGTTATATAATCAAACTCGCACACTTAGTGCT-TACATAATCAAAC
1 CCGCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTATACA-AATCAAAC
* * * * *
22772043 TCGCACACTTAGTGCTATATAATCAAACTTGCACACTTAGTGCTATGCAATTTAAAC
1 CCGCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTATACAAATCAAAC
22772100 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
22772115 CAATCTCATG
Statistics
Matches: 64, Mismatches: 7, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
57 61 0.95
58 3 0.05
ACGTcount: A:0.33, C:0.26, G:0.12, T:0.29
Consensus pattern (57 bp):
CCGCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTATACAAATCAAAC
Found at i:22778012 original size:27 final size:27
Alignment explanation
Indices: 22777982--22778133 Score: 223
Period size: 27 Copynumber: 5.6 Consensus size: 27
22777972 ATATTAAGTC
* *
22777982 CGCACACTCAGTGCTATATAGTCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
* *
22778009 CGCATACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACT
*
22778037 CGCACACTTAGTGCTACATAGTCAATT
1 CGCACACTTAGTGCTACATAGTCAACT
* *
22778064 CGCACACTTAGTGCAACATAGTCAATT
1 CGCACACTTAGTGCTACATAGTCAACT
22778091 CGCACACTTAGTGCTACATAGTCCAACT
1 CGCACACTTAGTGCTACATAGT-CAACT
22778119 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
22778134 GTACAATTTA
Statistics
Matches: 113, Mismatches: 10, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
27 69 0.61
28 44 0.39
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAACT
Found at i:22778050 original size:55 final size:54
Alignment explanation
Indices: 22777982--22778133 Score: 223
Period size: 55 Copynumber: 2.8 Consensus size: 54
22777972 ATATTAAGTC
* * *
22777982 CGCACACTCAGTGCTATATAGTCAACTCGCATACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATC-AACT
* * * *
22778037 CGCACACTTAGTGCTACATAGTCAATTCGCACACTTAGTGCAACATAGTCAATT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAACT
22778091 CGCACACTTAGTGCTACATAGTCCAACTCGCACACTTAGTGCT
1 CGCACACTTAGTGCTACATAGT-CAACTCGCACACTTAGTGCT
22778134 GTACAATTTA
Statistics
Matches: 87, Mismatches: 9, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
54 25 0.29
55 62 0.71
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.27
Consensus pattern (54 bp):
CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAACT
Found at i:22778119 original size:82 final size:82
Alignment explanation
Indices: 22777982--22778133 Score: 241
Period size: 82 Copynumber: 1.9 Consensus size: 82
22777972 ATATTAAGTC
* * *
22777982 CGCACACTCAGTGCTATATAGTCAACTCGCATACTTAGTGCTACATAATCAAACTCGCACACTTA
1 CGCACACTCAGTGCAACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACTCGCACACTTA
22778047 GTGCTACATAGTCAATT
66 GTGCTACATAGTCAATT
* * * *
22778064 CGCACACTTAGTGCAACATAGTCAATTCGCACACTTAGTGCTACATAGTCCAACTCGCACACTTA
1 CGCACACTCAGTGCAACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACTCGCACACTTA
22778129 GTGCT
66 GTGCT
22778134 GTACAATTTA
Statistics
Matches: 63, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
82 63 1.00
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.27
Consensus pattern (82 bp):
CGCACACTCAGTGCAACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACTCGCACACTTA
GTGCTACATAGTCAATT
Found at i:22790651 original size:21 final size:20
Alignment explanation
Indices: 22790627--22790665 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
22790617 GAATATTTTG
22790627 ATGTTTAATGATAGATTATGA
1 ATGTTTAATGATA-ATTATGA
*
22790648 ATGTTTGATGATAATTAT
1 ATGTTTAATGATAATTAT
22790666 ACAAGTTTTG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.36, C:0.00, G:0.18, T:0.46
Consensus pattern (20 bp):
ATGTTTAATGATAATTATGA
Found at i:22793966 original size:40 final size:40
Alignment explanation
Indices: 22793904--22794087 Score: 230
Period size: 40 Copynumber: 4.6 Consensus size: 40
22793894 TATTCGAATG
*
22793904 ATATCCGGGCTAAG-TCCTGAAGGCTTTTATGCTAGTGACT
1 ATATCCGGGCTAAGATCC-GAAGGCATTTATGCTAGTGACT
* * *
22793944 ATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAG-TGACT
* * *
22793984 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAGTGACT
* *
22794024 ATATCCGGTCTAAG-TCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTATGCTAGTGACT
*
22794064 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGATCCGAAGGC
22794088 CTTGTGCGAG
Statistics
Matches: 124, Mismatches: 15, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
39 1 0.01
40 118 0.95
41 5 0.04
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAGTGACT
Found at i:22794037 original size:80 final size:80
Alignment explanation
Indices: 22793904--22794087 Score: 255
Period size: 80 Copynumber: 2.3 Consensus size: 80
22793894 TATTCGAATG
* * * *
22793904 ATATCCGGGCTAAGTCCTGAAGGCTTTTATGCTAGTGACTATATCCGGACTAAGAT-CCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGCGACTATATCCGGACTAAG-TCCCGAAGGC
* *
22793968 ATTTGTGCGAGTTG-CT
65 ATTTATGCGAG-TGACC
* *
22793984 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACTATATCCGGTCTAAGTCCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGCGACTATATCCGGACTAAGTCCCGAAGGCA
*
22794049 TTTATGCTAGTGACC
66 TTTATGCGAGTGACC
22794064 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
22794088 CTTGTGCGAG
Statistics
Matches: 93, Mismatches: 9, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
79 3 0.03
80 90 0.97
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGCGACTATATCCGGACTAAGTCCCGAAGGCA
TTTATGCGAGTGACC
Found at i:22796406 original size:22 final size:23
Alignment explanation
Indices: 22796381--22796423 Score: 54
Period size: 22 Copynumber: 1.9 Consensus size: 23
22796371 AAAGCCGAGG
22796381 AGCTCAGTAT-GGAG-AAAAGAAA
1 AGCTCA-TATGGGAGCAAAAGAAA
*
22796403 AGCTGATATGGGAGCAAAAGA
1 AGCTCATATGGGAGCAAAAGA
22796424 GTTTCGTAAG
Statistics
Matches: 18, Mismatches: 1, Indels: 3
0.82 0.05 0.14
Matches are distributed among these distances:
21 3 0.17
22 9 0.50
23 6 0.33
ACGTcount: A:0.47, C:0.09, G:0.30, T:0.14
Consensus pattern (23 bp):
AGCTCATATGGGAGCAAAAGAAA
Found at i:22802056 original size:40 final size:40
Alignment explanation
Indices: 22801996--22802179 Score: 239
Period size: 40 Copynumber: 4.6 Consensus size: 40
22801986 TATTCGAATG
*
22801996 ATATCCGGGCTAAG-TCCCGAAGGCTTTTATGCTAGTGACT
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTATGCTAGTGACT
* * *
22802036 ATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAG-TGACT
* * *
22802076 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAGTGACT
*
22802116 ATATCCGGGTCTAAG-TCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGG-CTAAGATCCGAAGGCATTTATGCTAGTGACT
*
22802156 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGATCCGAAGGC
22802180 CTTGTGCGAG
Statistics
Matches: 126, Mismatches: 13, Indels: 10
0.85 0.09 0.07
Matches are distributed among these distances:
39 6 0.05
40 112 0.89
41 8 0.06
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAGTGACT
Found at i:22802135 original size:80 final size:80
Alignment explanation
Indices: 22801996--22802179 Score: 264
Period size: 80 Copynumber: 2.3 Consensus size: 80
22801986 TATTCGAATG
* * *
22801996 ATATCCGGGCTAAGTCCCGAAGGCTTTTATGCTAGTGACTATATCCGGACTAAGATCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGCGACTATATCCGGACTAAGATCCGAAGGCA
* *
22802061 TTTGTGCGAGTTG-CT
66 TTTATGCGAG-TGACC
* *
22802076 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACTATATCCGGGTCTAAG-TCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGCGACTATATCC-GGACTAAGATCCGAAGGC
*
22802140 ATTTATGCTAGTGACC
65 ATTTATGCGAGTGACC
22802156 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
22802180 CTTGTGCGAG
Statistics
Matches: 94, Mismatches: 8, Indels: 4
0.89 0.08 0.04
Matches are distributed among these distances:
79 2 0.02
80 85 0.90
81 7 0.07
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGCGACTATATCCGGACTAAGATCCGAAGGCA
TTTATGCGAGTGACC
Found at i:22808285 original size:48 final size:48
Alignment explanation
Indices: 22808229--22808326 Score: 187
Period size: 48 Copynumber: 2.0 Consensus size: 48
22808219 TGAATTACCA
*
22808229 TGGATTTTGTATCGGGCTTACTTCTGACACTGAGTAAGAATGATGCGG
1 TGGATTTTGTATCGGGCTTACTTCTGACACCGAGTAAGAATGATGCGG
22808277 TGGATTTTGTATCGGGCTTACTTCTGACACCGAGTAAGAATGATGCGG
1 TGGATTTTGTATCGGGCTTACTTCTGACACCGAGTAAGAATGATGCGG
22808325 TG
1 TG
22808327 TGGGTCATTG
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 49 1.00
ACGTcount: A:0.22, C:0.15, G:0.30, T:0.33
Consensus pattern (48 bp):
TGGATTTTGTATCGGGCTTACTTCTGACACCGAGTAAGAATGATGCGG
Found at i:22810668 original size:48 final size:48
Alignment explanation
Indices: 22810560--22810881 Score: 269
Period size: 48 Copynumber: 6.8 Consensus size: 48
22810550 AACGTGCAAA
* * *
22810560 ATGTGCCTGTATAAGACCATGTCTGGGACATGACATCGGTGATTATAT
1 ATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGCGATTATAT
* * ** * * *
22810608 ATTTG-TTAGTGTAAGACCGCGTCTAGGAAATGGCATCGGCAATTATAT
1 ATGTGCCT-GTGTAAGACCATGTCTGGGACATGGCATCGGCGATTATAT
* * * *
22810656 ATGTGCCTGTGTAAGGCCAAGTTTGGGACATGGCATCGGCGA-T-GAT
1 ATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGCGATTATAT
* * * *
22810702 GTGTG-CTAGTGTAAGACCATGTCCGGGACATGGCATCGGTGATGATAT
1 ATGTGCCT-GTGTAAGACCATGTCTGGGACATGGCATCGGCGATTATAT
* * ** * *
22810750 ATGTGCTTGTGTAAGACCATGTCTGGGACATGGAATTAGCAATGATAT
1 ATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGCGATTATAT
* * * * *
22810798 GTGTGCCAGTGTAAGACCATTTTTGGGACATGGCATCGGCGATGATAT
1 ATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGCGATTATAT
* ** *
22810846 GTG-GATTCATGTAAGACCATGTC-GGGAACATGGCAT
1 ATGTGCCT-GTGTAAGACCATGTCTGGG-ACATGGCAT
22810882 TGTTACTTCA
Statistics
Matches: 215, Mismatches: 51, Indels: 16
0.76 0.18 0.06
Matches are distributed among these distances:
45 2 0.01
46 35 0.16
47 6 0.03
48 170 0.79
49 2 0.01
ACGTcount: A:0.26, C:0.16, G:0.30, T:0.29
Consensus pattern (48 bp):
ATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGCGATTATAT
Found at i:22810751 original size:96 final size:96
Alignment explanation
Indices: 22810637--22810845 Score: 255
Period size: 94 Copynumber: 2.2 Consensus size: 96
22810627 CGTCTAGGAA
* * * * * *
22810637 ATGGCATCGGCAAT-TATATATGTGCCTGTGTAAGGCCAAGTTTGGGACATGGCATCGGCGATG-
1 ATGGCATCGGCGATGTATATATGTGCCTGTGTAAGACCAAGTCTGGGACATGGAATCAGCAATGA
*
22810700 ATGTGTGCTAGTGTAAGACCATGTCCGGGAC
66 ATGTGTGCCAGTGTAAGACCATGTCCGGGAC
* * * *
22810731 ATGGCATCGGTGATG-ATATATGTGCTTGTGTAAGACCATGTCTGGGACATGGAATTAGCAATGA
1 ATGGCATCGGCGATGTATATATGTGCCTGTGTAAGACCAAGTCTGGGACATGGAATCAGCAATGA
* **
22810795 TATGTGTGCCAGTGTAAGACCATTTTTGGGAC
66 -ATGTGTGCCAGTGTAAGACCATGTCCGGGAC
22810827 ATGGCATCGGCGATG-ATAT
1 ATGGCATCGGCGATGTATAT
22810846 GTGGATTCAT
Statistics
Matches: 97, Mismatches: 15, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
94 52 0.54
96 45 0.46
ACGTcount: A:0.25, C:0.16, G:0.31, T:0.29
Consensus pattern (96 bp):
ATGGCATCGGCGATGTATATATGTGCCTGTGTAAGACCAAGTCTGGGACATGGAATCAGCAATGA
ATGTGTGCCAGTGTAAGACCATGTCCGGGAC
Found at i:22810823 original size:142 final size:144
Alignment explanation
Indices: 22810571--22810881 Score: 389
Period size: 142 Copynumber: 2.2 Consensus size: 144
22810561 TGTGCCTGTA
* * * * *
22810571 TAAGACCATGTCTGGGACATGACATCGGTGATTATATATTTGTTAGTGTAAGACCGCGTCTAGGA
1 TAAGACCATGTCCGGGACATGGCATCGGTGATGATATATGTGTTAGTGTAAGACCACGTCTAGGA
* * * * *
22810636 AATGGCATCGGCAATTATATATGTGCCTGTGTAAGGCCAAGTTTGGGACATGGCATCGGCGATGA
66 AATGGAATCAGCAATGATATATGTGCCAGTGTAAGACCAAGTTTGGGACATGGCATCGGCGATGA
*
22810701 TGTGT-G-CT-AGTG
131 TATGTGGACTCA-TG
* *
22810713 TAAGACCATGTCCGGGACATGGCATCGGTGATGATATATGTGCTT-GTGTAAGACCATGTCTGGG
1 TAAGACCATGTCCGGGACATGGCATCGGTGATGATATATGTG-TTAGTGTAAGACCACGTCTAGG
* * * **
22810777 ACATGGAATTAGCAATGATATGTGTGCCAGTGTAAGACCATTTTTGGGACATGGCATCGGCGATG
65 AAATGGAATCAGCAATGATATATGTGCCAGTGTAAGACCAAGTTTGGGACATGGCATCGGCGATG
*
22810842 ATATGTGGATTCATG
130 ATATGTGGACTCATG
22810857 TAAGACCATGT-CGGGAACATGGCAT
1 TAAGACCATGTCCGGG-ACATGGCAT
22810882 TGTTACTTCA
Statistics
Matches: 145, Mismatches: 19, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
142 114 0.79
143 7 0.05
144 23 0.16
145 1 0.01
ACGTcount: A:0.26, C:0.16, G:0.30, T:0.29
Consensus pattern (144 bp):
TAAGACCATGTCCGGGACATGGCATCGGTGATGATATATGTGTTAGTGTAAGACCACGTCTAGGA
AATGGAATCAGCAATGATATATGTGCCAGTGTAAGACCAAGTTTGGGACATGGCATCGGCGATGA
TATGTGGACTCATG
Found at i:22817849 original size:27 final size:27
Alignment explanation
Indices: 22817791--22817872 Score: 87
Period size: 27 Copynumber: 3.1 Consensus size: 27
22817781 CAGCATGGCT
* * *
22817791 ACCAGAAT-TGATATTGTGACAGAGTC
1 ACCAGAATCAGATATTGTGGCAGAGCC
*
22817817 ATCAG-ATACAGATATTGTGGCAGAGCC
1 ACCAGAAT-CAGATATTGTGGCAGAGCC
* *
22817844 ACCAGAATCAGATAATGTGGCAAAGCC
1 ACCAGAATCAGATATTGTGGCAGAGCC
22817871 AC
1 AC
22817873 TTAACAAAAT
Statistics
Matches: 46, Mismatches: 7, Indels: 5
0.79 0.12 0.09
Matches are distributed among these distances:
25 2 0.04
26 4 0.09
27 38 0.83
28 2 0.04
ACGTcount: A:0.37, C:0.20, G:0.23, T:0.21
Consensus pattern (27 bp):
ACCAGAATCAGATATTGTGGCAGAGCC
Found at i:22818129 original size:27 final size:27
Alignment explanation
Indices: 22818087--22818166 Score: 99
Period size: 27 Copynumber: 3.0 Consensus size: 27
22818077 GATCGGTCAA
* *
22818087 CAGATATTGTGACAAAGTCACCAGATT
1 CAGATATTGTGACAAAGCCACCAGAAT
*
22818114 CAGATATTGTGCCAAAGCCACCAGAAT
1 CAGATATTGTGACAAAGCCACCAGAAT
* *
22818141 -AGATATTTGTGGCATAGCCACCAGAA
1 CAGATA-TTGTGACAAAGCCACCAGAA
22818167 CGCTTCCTCC
Statistics
Matches: 47, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
26 5 0.11
27 42 0.89
ACGTcount: A:0.36, C:0.21, G:0.20, T:0.23
Consensus pattern (27 bp):
CAGATATTGTGACAAAGCCACCAGAAT
Found at i:22818421 original size:27 final size:27
Alignment explanation
Indices: 22818391--22818714 Score: 380
Period size: 27 Copynumber: 12.0 Consensus size: 27
22818381 GGGGTAAAAT
* * *
22818391 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
22818418 GGTAATTCTACCCTATAGGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
22818445 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
22818472 GGTAATTCTACCTTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
22818499 GGTAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
22818526 AGTATTTCTACCCTATAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
22818553 GGTATTTTTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
22818580 GATAATTCTACCCTAC-AGGGATATTTC
1 GGTAATTCTACCCTACAAGGG-TATTTC
* * *
22818607 AGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
22818634 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
22818661 GATATTTCTACCCTACAAGGCTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
22818688 AGTAATTCTATCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
22818715 AATAATTTTG
Statistics
Matches: 255, Mismatches: 40, Indels: 4
0.85 0.13 0.01
Matches are distributed among these distances:
26 4 0.02
27 248 0.97
28 3 0.01
ACGTcount: A:0.25, C:0.20, G:0.18, T:0.37
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:22818519 original size:81 final size:81
Alignment explanation
Indices: 22818391--22818714 Score: 450
Period size: 81 Copynumber: 4.0 Consensus size: 81
22818381 GGGGTAAAAT
* * * * * *
22818391 GGTAATTTTACCCCACAAGGGTATCTCGGTAATTCTACCCTATAGGGGTATTTTAGTAATTCTAC
1 GGTAATTCTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCAGTAATTCTAC
22818456 CCTACAGGGGTATTTC
66 CCTACAGGGGTATTTC
* * * * *
22818472 GGTAATTCTACCTTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTTAGTATTTCTAC
1 GGTAATTCTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCAGTAATTCTAC
* *
22818537 CCTATAAGGGTATTTC
66 CCTACAGGGGTATTTC
* * *
22818553 GGTATTTTTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGATATTTCAGTAATTCTAC
1 GGTAATTCTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCAGTAATTCTAC
*
22818618 CCTATAGGGGTATTTC
66 CCTACAGGGGTATTTC
* * * * *
22818634 GGTATTTCTACCCTACAAGGGTATTTCGATATTTCTACCCTACAAGGCTATTTCAGTAATTCTAT
1 GGTAATTCTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCAGTAATTCTAC
22818699 CCTACAGGGGTATTTC
66 CCTACAGGGGTATTTC
22818715 AATAATTTTG
Statistics
Matches: 219, Mismatches: 24, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
81 219 1.00
ACGTcount: A:0.25, C:0.20, G:0.18, T:0.37
Consensus pattern (81 bp):
GGTAATTCTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCAGTAATTCTAC
CCTACAGGGGTATTTC
Found at i:22818792 original size:81 final size:80
Alignment explanation
Indices: 22818706--22818943 Score: 255
Period size: 81 Copynumber: 2.9 Consensus size: 80
22818696 TATCCTACAG
* * ** * *
22818706 GGGTATTTCAATAATTTTGTAAATCGAGGGTAAAATGATAATTTTGTAAATCGGGGGTACATTGG
1 GGGTATTTCAGTAATTTTGCAAATCGAGGGT-ATTTGATAATTTTATAAATCGGGGGTACTTTGG
*
22818771 TAATTTTACAAGTCAA
65 TAATTTTACAAATCAA
* * * * * *
22818787 GGGTATTTCAGTAATTTTACAAATTGAGGGTGTTTCAGTAATTTTACAAA-CTGAGGGTA-TTTC
1 GGGTATTTCAGTAATTTTGCAAATCGAGGGTATTTGA-TAATTTTATAAATC-GGGGGTACTTT-
* *
22818850 GTTAATTTTACAAATCGA
63 GGTAATTTTACAAATCAA
* * *
22818868 GGGTATTTCAGTAATTTTGCAAACCGAGGATATTTGGGTAATTTTATAAATCGGGGGTACTTTGG
1 GGGTATTTCAGTAATTTTGCAAATCGAGGGTATTT-GATAATTTTATAAATCGGGGGTACTTTGG
22818933 TAATTTTACAA
65 TAATTTTACAA
22818944 CTGGGGGTAT
Statistics
Matches: 126, Mismatches: 25, Indels: 12
0.77 0.15 0.07
Matches are distributed among these distances:
80 5 0.04
81 117 0.93
82 4 0.03
ACGTcount: A:0.32, C:0.09, G:0.22, T:0.38
Consensus pattern (80 bp):
GGGTATTTCAGTAATTTTGCAAATCGAGGGTATTTGATAATTTTATAAATCGGGGGTACTTTGGT
AATTTTACAAATCAA
Found at i:22818802 original size:54 final size:53
Alignment explanation
Indices: 22818744--22818943 Score: 183
Period size: 54 Copynumber: 3.7 Consensus size: 53
22818734 GGTAAAATGA
** * * * * *
22818744 TAATTTTGTAAATCGGGGGTACATT-GGTAATTTTACAAGTCAAGGGTATTTCAG
1 TAATTTTACAAATCGAGGGTACTTTCAGTAATTTTACAA-ACGAGGGTATTTC-G
* *
22818798 TAATTTTACAAATTGAGGGT-GTTTCAGTAATTTTACAAACTGAGGGTATTTCG
1 TAATTTTACAAATCGAGGGTACTTTCAGTAATTTTACAAAC-GAGGGTATTTCG
* * *
22818851 TTAATTTTACAAATCGAGGGTA-TTTCAGTAATTTTGCAAACCGAGGATATTTGGG
1 -TAATTTTACAAATCGAGGGTACTTTCAGTAATTTTACAAA-CGAGGGTATTT-CG
* * *
22818906 TAATTTTATAAATCGGGGGTACTTT-GGTAATTTTACAA
1 TAATTTTACAAATCGAGGGTACTTTCAGTAATTTTACAA
22818944 CTGGGGGTAT
Statistics
Matches: 122, Mismatches: 17, Indels: 14
0.80 0.11 0.09
Matches are distributed among these distances:
53 4 0.03
54 113 0.93
55 5 0.04
ACGTcount: A:0.30, C:0.10, G:0.21, T:0.39
Consensus pattern (53 bp):
TAATTTTACAAATCGAGGGTACTTTCAGTAATTTTACAAACGAGGGTATTTCG
Found at i:22818816 original size:27 final size:27
Alignment explanation
Indices: 22818770--22818943 Score: 192
Period size: 27 Copynumber: 6.4 Consensus size: 27
22818760 GGGTACATTG
* *
22818770 GTAATTTTACAAGTCAAGGGTATTTCA
1 GTAATTTTACAAATCGAGGGTATTTCA
* *
22818797 GTAATTTTACAAATTGAGGGTGTTTCA
1 GTAATTTTACAAATCGAGGGTATTTCA
22818824 GTAATTTTACAAA-CTGAGGGTATTTC-
1 GTAATTTTACAAATC-GAGGGTATTTCA
22818850 GTTAATTTTACAAATCGAGGGTATTTCA
1 G-TAATTTTACAAATCGAGGGTATTTCA
* * * **
22818878 GTAATTTTGCAAACCGAGGATATTTGG
1 GTAATTTTACAAATCGAGGGTATTTCA
* * *
22818905 GTAATTTTATAAATCGGGGGTACTTT-G
1 GTAATTTTACAAATCGAGGGTA-TTTCA
22818932 GTAATTTTACAA
1 GTAATTTTACAA
22818944 CTGGGGGTAT
Statistics
Matches: 125, Mismatches: 17, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
26 1 0.01
27 119 0.95
28 5 0.04
ACGTcount: A:0.31, C:0.10, G:0.21, T:0.39
Consensus pattern (27 bp):
GTAATTTTACAAATCGAGGGTATTTCA
Found at i:22828129 original size:43 final size:41
Alignment explanation
Indices: 22828082--22828238 Score: 147
Period size: 43 Copynumber: 3.7 Consensus size: 41
22828072 TGAGATGATA
* * *
22828082 TGTAAGACCATGTCTGGGGCATTGGCATTGTATTGTGGTTATG
1 TGTAAGACCATGTCTGGGACATTGGCATTGTA-T-CGATTATG
* *
22828125 TGTAAGACCATGTCTAGGACATTGGCATCAT-TATACGATTACG
1 TGTAAGACCATGTCTGGGACATTGGCAT--TGTAT-CGATTATG
*
22828168 TGTACGACCATGTCTGGGACATTGGCATTGTTAATCGATT-TCG
1 TGTAAGACCATGTCTGGGACATTGGCATTG-T-ATCGATTAT-G
* * *
22828211 TGTAAGACCCTGTCTGGGGCAGTGGCAT
1 TGTAAGACCATGTCTGGGACATTGGCAT
22828239 CGATATGTGA
Statistics
Matches: 95, Mismatches: 13, Indels: 12
0.79 0.11 0.10
Matches are distributed among these distances:
41 1 0.01
43 89 0.94
44 4 0.04
45 1 0.01
ACGTcount: A:0.22, C:0.17, G:0.28, T:0.32
Consensus pattern (41 bp):
TGTAAGACCATGTCTGGGACATTGGCATTGTATCGATTATG
Found at i:22828263 original size:86 final size:86
Alignment explanation
Indices: 22828081--22828264 Score: 203
Period size: 86 Copynumber: 2.1 Consensus size: 86
22828071 ATGAGATGAT
* * * *
22828081 ATGTAAGACCATGTCTGGGGCATTGGCATTGTATTGTGGTTATGTGTAAGACCATGTCTAGGACA
1 ATGTAAGACCATGTCTGGGACATTGGCATTGTAATGCGATTATGTGTAAGACCATGTCTAGGACA
* *
22828146 TTGGCATCATTATACGATTAC
66 GTGGCATCATTATACGATAAC
* * * * *
22828167 GTGTACGACCATGTCTGGGACATTGGCATTGTTAAT-CGATT-TCGTGTAAGACCCTGTCTGGGG
1 ATGTAAGACCATGTCTGGGACATTGGCATTG-TAATGCGATTAT-GTGTAAGACCATGTCTAGGA
**
22828230 CAGTGGCATCGA-TATGTGATAAC
64 CAGTGGCATC-ATTATACGATAAC
22828253 ATGTAAGACCAT
1 ATGTAAGACCAT
22828265 ATTTTGGATA
Statistics
Matches: 80, Mismatches: 15, Indels: 6
0.79 0.15 0.06
Matches are distributed among these distances:
85 1 0.01
86 75 0.94
87 4 0.05
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.32
Consensus pattern (86 bp):
ATGTAAGACCATGTCTGGGACATTGGCATTGTAATGCGATTATGTGTAAGACCATGTCTAGGACA
GTGGCATCATTATACGATAAC
Found at i:22830405 original size:43 final size:43
Alignment explanation
Indices: 22830260--22830409 Score: 189
Period size: 43 Copynumber: 3.5 Consensus size: 43
22830250 TATCCCAAAT
*
22830260 ATGGTCTTACATGTTA-C-CATATATCGATGCCAATGTCCCAGAC
1 ATGGTCTTACATGTAATCACA-ATA-CGATGCCAATGTCCCAGAC
* * * *
22830303 GTGGTCTTACACGAAATCA-TATAACGATGCCAATGTCCCAGAC
1 ATGGTCTTACATGTAATCACAAT-ACGATGCCAATGTCCCAGAC
* *
22830346 ATGGTCTTACATGTAATCACAATACAATGCCAATGTCCTAGAC
1 ATGGTCTTACATGTAATCACAATACGATGCCAATGTCCCAGAC
22830389 ATGGTCTTACATGTAATCACA
1 ATGGTCTTACATGTAATCACA
22830410 TCTAGGTAAT
Statistics
Matches: 92, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
43 88 0.96
44 4 0.04
ACGTcount: A:0.32, C:0.24, G:0.16, T:0.28
Consensus pattern (43 bp):
ATGGTCTTACATGTAATCACAATACGATGCCAATGTCCCAGAC
Found at i:22839961 original size:31 final size:31
Alignment explanation
Indices: 22839923--22839984 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
22839913 ATTTGCATAT
22839923 ACATATACATCACCAAATATACCAAAATAAG
1 ACATATACATCACCAAATATACCAAAATAAG
22839954 ACATATACATCACCAAATATACCAAAATAAG
1 ACATATACATCACCAAATATACCAAAATAAG
22839985 CCAACTCTCA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.55, C:0.23, G:0.03, T:0.19
Consensus pattern (31 bp):
ACATATACATCACCAAATATACCAAAATAAG
Found at i:22843592 original size:39 final size:40
Alignment explanation
Indices: 22843549--22843716 Score: 148
Period size: 40 Copynumber: 4.2 Consensus size: 40
22843539 CTCGTTCAAG
* * * *
22843549 TGCCTTCGGGACATAGCCCGG-TTATAGTAACTCATAC-AA
1 TGCCTTCGGGACTTAACCCGGATTATA-AAACTCACACGAA
* *
22843588 TGCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACGAA
1 TGCCTTCGGGACTTAACCCGGATTATAAAACTCACACGAA
* * *
22843628 TGCCTTCGGGACTTAACCCGGAATTAGT--ATCTCGCACAAA
1 TGCCTTCGGGACTTAACCCGG-ATTA-TAAAACTCACACGAA
* * * *
22843668 GGCCTTCGGGACTTAACCCGGAATTA-ATAACTCGCACAAA
1 TGCCTTCGGGACTTAACCCGG-ATTATAAAACTCACACGAA
22843708 TGCCTTCGG
1 TGCCTTCGG
22843717 ATCTTAGTCC
Statistics
Matches: 111, Mismatches: 12, Indels: 11
0.83 0.09 0.08
Matches are distributed among these distances:
39 26 0.23
40 81 0.73
41 3 0.03
42 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
TGCCTTCGGGACTTAACCCGGATTATAAAACTCACACGAA
Found at i:22843700 original size:80 final size:80
Alignment explanation
Indices: 22843584--22843769 Score: 229
Period size: 80 Copynumber: 2.3 Consensus size: 80
22843574 AGTAACTCAT
* * *
22843584 ACAATGCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACGAATGCCTTCGGGA-CTTAACCCG
1 ACAAAGCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATGCCTTC-GGATCTTAACCCG
*
22843648 GA-ATTAGT-A-TCTCGC
65 GATA-TAGTCACT-TAGC
**
22843663 ACAAAGGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACAAATGCCTTCGGATCTTAGTCC
1 ACAAA-GCCTTCGGGACTTAACCCGGATATTAA-AACTCGCACAAATGCCTTCGGATCTTAACCC
22843727 GGATATAGTCACTTAGC
64 GGATATAGTCACTTAGC
*
22843744 ACAAAGCCTTCGGGACTTAGCCCGGA
1 ACAAAGCCTTCGGGACTTAACCCGGA
22843770 CAGCATTCAA
Statistics
Matches: 94, Mismatches: 7, Indels: 11
0.84 0.06 0.10
Matches are distributed among these distances:
79 11 0.12
80 72 0.77
81 10 0.11
82 1 0.01
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (80 bp):
ACAAAGCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATGCCTTCGGATCTTAACCCGG
ATATAGTCACTTAGC
Found at i:22843729 original size:40 final size:40
Alignment explanation
Indices: 22843586--22843769 Score: 205
Period size: 40 Copynumber: 4.6 Consensus size: 40
22843576 TAACTCATAC
* *
22843586 AATGCCTTCGGGACTTAACCCGGATTTTAA-AACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACA
* *
22843626 AATGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
*
22843666 AAGGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
** * * *
22843706 AATGCCTTC-GGATCTTAGTCCGG-ATATAGTCACTTAGCACA
1 AATGCCTTCGGGA-CTTAACCCGGAAT-TAATAAC-TCGCACA
*
22843747 AA-GCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
22843770 CAGCATTCAA
Statistics
Matches: 124, Mismatches: 14, Indels: 11
0.83 0.09 0.07
Matches are distributed among these distances:
39 8 0.06
40 105 0.85
41 11 0.09
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
Found at i:22848014 original size:40 final size:39
Alignment explanation
Indices: 22847917--22848137 Score: 207
Period size: 40 Copynumber: 5.6 Consensus size: 39
22847907 TCCTCGTTCA
* * *
22847917 AATGCCTTCGGGACATAGCCCGG-TTTAGTAACTCACAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* *
22847955 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
*
22847994 GAATGCCTTCGGGACTTAACCC-GATTTAGTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* * *
22848033 AAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCAC
** * * * *
22848073 AAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
1 -AATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCAC
* *
22848114 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
22848138 CAGCATTCAA
Statistics
Matches: 155, Mismatches: 20, Indels: 14
0.82 0.11 0.07
Matches are distributed among these distances:
38 22 0.14
39 52 0.34
40 69 0.45
41 12 0.08
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
Found at i:22848020 original size:39 final size:40
Alignment explanation
Indices: 22847915--22848084 Score: 213
Period size: 39 Copynumber: 4.3 Consensus size: 40
22847905 GCTCCTCGTT
* *
22847915 CAAATGCCTTCGGGACATAGCCCGG-TTTAGTAACTCACA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
*
22847954 C-AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * *
22847993 CGAATGCCTTCGGGACTTAACCC-GATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * * *
22848032 CAAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGG-ATTTAGTAACTCGCA
22848072 CAAATGCCTTCGG
1 CAAATGCCTTCGG
22848085 ATCTTAGTCC
Statistics
Matches: 117, Mismatches: 10, Indels: 7
0.87 0.07 0.05
Matches are distributed among these distances:
38 22 0.19
39 48 0.41
40 43 0.37
41 4 0.03
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
Found at i:22848078 original size:79 final size:78
Alignment explanation
Indices: 22847915--22848084 Score: 216
Period size: 79 Copynumber: 2.2 Consensus size: 78
22847905 GCTCCTCGTT
* * *
22847915 CAAATGCCTTCGGGACATAGCCCGGTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGGAT
1 CAAATGCCTTCGGGACATAACCCGATTTAGTAACTCACACAAGGCCTTCGGGACATAACCCGGAT
22847980 TTAATAACTCGCA
66 TTAATAACTCGCA
* * * * * *
22847993 CGAATGCCTTCGGGACTTAACCCGATTTAGTATCTCGCACAAAGGCCTTCGGGGCTTAACCCGGA
1 CAAATGCCTTCGGGACATAACCCGATTTAGTAACTCACAC-AAGGCCTTCGGGACATAACCCGG-
* *
22848058 ATTT-GTATCTCGCA
64 ATTTAATAACTCGCA
22848072 CAAATGCCTTCGG
1 CAAATGCCTTCGG
22848085 ATCTTAGTCC
Statistics
Matches: 78, Mismatches: 12, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
78 34 0.44
79 40 0.51
80 4 0.05
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (78 bp):
CAAATGCCTTCGGGACATAACCCGATTTAGTAACTCACACAAGGCCTTCGGGACATAACCCGGAT
TTAATAACTCGCA
Found at i:22848146 original size:41 final size:41
Alignment explanation
Indices: 22848069--22848146 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
22848059 TTTGTATCTC
* * *
22848069 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
22848110 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
22848147 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:22854756 original size:80 final size:80
Alignment explanation
Indices: 22854623--22854842 Score: 229
Period size: 80 Copynumber: 2.8 Consensus size: 80
22854613 CTCGTTCAAG
* * * * * * * *
22854623 TGCCTTCGGA-CATAGCCCGGTTATAGTAACTCA-TACAATGCCTTCGGGACTTAACCCGGATTT
1 TGCCTTCGGATCTTAACCCGGATATAGTCACTTAGCACAAAGCCTTCGGGACTTAACCCGGA-AT
*
22854686 TAA-AACTCGCACGAA
65 TAATAACTCGCACAAA
*
22854701 TGCCTTCGGGA-CTTAACCCGGA-ATTAGT-A-TCTCGCACAAAGGCCTTCGGGACTTAACCCGG
1 TGCCTTC-GGATCTTAACCCGGATA-TAGTCACT-TAGCACAAA-GCCTTCGGGACTTAACCCGG
22854762 AATTAATAACTCGCACAAA
62 AATTAATAACTCGCACAAA
** *
22854781 TGCCTTCGGATCTTAGTCCGGATATAGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 TGCCTTCGGATCTTAACCCGGATATAGTCACTTAGCACAAAGCCTTCGGGACTTAACCCGGA
22854843 CAGCATTCAA
Statistics
Matches: 119, Mismatches: 13, Indels: 18
0.79 0.09 0.12
Matches are distributed among these distances:
77 1 0.01
78 9 0.08
79 26 0.22
80 72 0.61
81 10 0.08
82 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (80 bp):
TGCCTTCGGATCTTAACCCGGATATAGTCACTTAGCACAAAGCCTTCGGGACTTAACCCGGAATT
AATAACTCGCACAAA
Found at i:22854802 original size:40 final size:40
Alignment explanation
Indices: 22854659--22854842 Score: 205
Period size: 40 Copynumber: 4.6 Consensus size: 40
22854649 TAACTCATAC
* *
22854659 AATGCCTTCGGGACTTAACCCGGATTTTAA-AACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACA
* *
22854699 AATGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
*
22854739 AAGGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
** * * *
22854779 AATGCCTTC-GGATCTTAGTCCGG-ATATAGTCACTTAGCACA
1 AATGCCTTCGGGA-CTTAACCCGGAAT-TAATAAC-TCGCACA
*
22854820 AA-GCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
22854843 CAGCATTCAA
Statistics
Matches: 124, Mismatches: 14, Indels: 11
0.83 0.09 0.07
Matches are distributed among these distances:
39 8 0.06
40 105 0.85
41 11 0.09
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
Found at i:22862922 original size:46 final size:45
Alignment explanation
Indices: 22862855--22863024 Score: 198
Period size: 46 Copynumber: 3.7 Consensus size: 45
22862845 TGTAACCCGC
22862855 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCTTTCGTAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGC-TTCGTAT
* *
22862901 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGT-T
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--GCTTCGTAT
* *** * * *
22862947 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGGC-TTCGTAT
*
22862994 CCATAAGTGAACTCGAACTCAACTCAACGAG
1 CCATAAGTGAACTCGGACTCAACTCAACGAG
22863025 TTCGAATGCT
Statistics
Matches: 103, Mismatches: 16, Indels: 10
0.80 0.12 0.08
Matches are distributed among these distances:
45 1 0.01
46 65 0.63
47 35 0.34
48 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.19, T:0.22
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCTTCGTAT
Found at i:22862975 original size:93 final size:93
Alignment explanation
Indices: 22862863--22863033 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
22862853 GCCCATAAGT
* * * *
22862863 GAACTCGGACTCAACTCAACGAGCTCGGGCTTTCGTATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGAACTCAACTCAA
*
22862928 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGAATGCCTAGTTACATCTCTC
*
22862956 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGAACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGAACTCAACTCAA
*
22863021 CGAGTTCGAATGC
66 CGAGCTCGAATGC
22863034 TCAACCATCC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGAACTCAACTCAA
CGAGCTCGAATGCCTAGTTACATCTCTC
Found at i:22865460 original size:30 final size:30
Alignment explanation
Indices: 22865416--22865504 Score: 92
Period size: 30 Copynumber: 3.0 Consensus size: 30
22865406 CAAAGATAAT
22865416 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* * *
22865445 GAGAAACCCAGAATAAAGAAAT-CTAGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
22865475 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
22865505 CGATACTATG
Statistics
Matches: 48, Mismatches: 9, Indels: 5
0.77 0.15 0.08
Matches are distributed among these distances:
29 10 0.21
30 35 0.73
31 3 0.06
ACGTcount: A:0.57, C:0.15, G:0.17, T:0.11
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:22865464 original size:15 final size:15
Alignment explanation
Indices: 22865416--22865495 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
22865406 CAAAGATAAT
*
22865416 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
22865430 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
22865445 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
*
22865460 AAGAAATCTAGAATA
1 AAGAAATCCAGAATA
* *
22865475 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
22865490 AAGAAA
1 AAGAAA
22865496 CCCAAGATAC
Statistics
Matches: 53, Mismatches: 10, Indels: 5
0.78 0.15 0.07
Matches are distributed among these distances:
14 9 0.17
15 43 0.81
16 1 0.02
ACGTcount: A:0.59, C:0.12, G:0.17, T:0.11
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:22865504 original size:15 final size:15
Alignment explanation
Indices: 22865427--22865504 Score: 61
Period size: 15 Copynumber: 5.2 Consensus size: 15
22865417 AGAAAACCGA
*
22865427 ATAAAGAAATCCAAG
1 ATAAAGAAACCCAAG
*
22865442 ATAGAGAAACCC-AG
1 ATAAAGAAACCCAAG
* *
22865456 AATAAAGAAA-TCTAG
1 -ATAAAGAAACCCAAG
* * *
22865471 AATAAAGAGATCCAGG
1 -ATAAAGAAACCCAAG
22865487 ATAAAGAAACCCAAG
1 ATAAAGAAACCCAAG
22865502 ATA
1 ATA
22865505 CGATACTATG
Statistics
Matches: 49, Mismatches: 11, Indels: 6
0.74 0.17 0.09
Matches are distributed among these distances:
14 3 0.06
15 44 0.90
16 2 0.04
ACGTcount: A:0.56, C:0.14, G:0.17, T:0.13
Consensus pattern (15 bp):
ATAAAGAAACCCAAG
Found at i:22868569 original size:93 final size:93
Alignment explanation
Indices: 22868441--22868611 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
22868431 GCCCATAAGT
* *
22868441 GAACTCGGACTCAACTCAAAGAGCTCGGGCGTTCGCATCCATAAGTGAACTCAGACTCAACTCAA
1 GAACTCGGACTCAACTCAAAGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
22868506 CGAGCTCGGATACCTAGTTACATCTCTC
66 CGAGCTCGGATACCTAGTTACATCTCTC
* * *
22868534 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAAAGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
*
22868599 CGAGTTCGGATAC
66 CGAGCTCGGATAC
22868612 TCAACCATCC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAAAGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
CGAGCTCGGATACCTAGTTACATCTCTC
Found at i:22868608 original size:46 final size:46
Alignment explanation
Indices: 22868433--22868608 Score: 201
Period size: 46 Copynumber: 3.8 Consensus size: 46
22868423 AGTAACCCGC
* * *
22868433 CCATAAGTGAACTCGGACTCAACTCAAAGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
* * * * *
22868479 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGATACCTAG-TT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACA-TTCGCAT
* *** *
22868525 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
22868572 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
22868609 TACTCAACCA
Statistics
Matches: 105, Mismatches: 22, Indels: 6
0.79 0.17 0.05
Matches are distributed among these distances:
46 70 0.67
47 35 0.33
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:22872803 original size:28 final size:28
Alignment explanation
Indices: 22872772--22872827 Score: 94
Period size: 28 Copynumber: 2.0 Consensus size: 28
22872762 TAAATTATCA
22872772 AGGATGGCACTTAGTGTGCAAGACATCC
1 AGGATGGCACTTAGTGTGCAAGACATCC
* *
22872800 AGGATGGCACTTTGTGTGCAATACATCC
1 AGGATGGCACTTAGTGTGCAAGACATCC
22872828 GTGAAGGCAT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (28 bp):
AGGATGGCACTTAGTGTGCAAGACATCC
Found at i:22872836 original size:28 final size:28
Alignment explanation
Indices: 22872772--22872846 Score: 82
Period size: 28 Copynumber: 2.7 Consensus size: 28
22872762 TAAATTATCA
*
22872772 AGGATGGCACTTAGTGTGCAAGACATCC
1 AGGAAGGCACTTAGTGTGCAAGACATCC
* * *
22872800 AGGATGGCACTTTGTGTGCAATACATCC
1 AGGAAGGCACTTAGTGTGCAAGACATCC
22872828 -GTGAAGGCA-TTGAGTGTGC
1 AG-GAAGGCACTT-AGTGTGC
22872847 TAAACTTCAA
Statistics
Matches: 41, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
27 3 0.07
28 38 0.93
ACGTcount: A:0.25, C:0.19, G:0.31, T:0.25
Consensus pattern (28 bp):
AGGAAGGCACTTAGTGTGCAAGACATCC
Found at i:22875163 original size:146 final size:146
Alignment explanation
Indices: 22874899--22875191 Score: 577
Period size: 146 Copynumber: 2.0 Consensus size: 146
22874889 TTCCGATTTG
*
22874899 ACTAAAAATGGGCTGTTACAAGGACCCCTTTGTCTCAAGATAGAAAACATTGAAGCTAGGGATCT
1 ACTAAAAATGGGCTATTACAAGGACCCCTTTGTCTCAAGATAGAAAACATTGAAGCTAGGGATCT
22874964 AAAATAGGAGAAGCCTATCTCGCAACATAAACCTCATGTCTCAAGACATCCAATAGAACTTTGTA
66 AAAATAGGAGAAGCCTATCTCGCAACATAAACCTCATGTCTCAAGACATCCAATAGAACTTTGTA
22875029 TTGGACCTTGAGGAAT
131 TTGGACCTTGAGGAAT
22875045 ACTAAAAATGGGCTATTACAAGGACCCCTTTGTCTCAAGATAGAAAACATTGAAGCTAGGGATCT
1 ACTAAAAATGGGCTATTACAAGGACCCCTTTGTCTCAAGATAGAAAACATTGAAGCTAGGGATCT
22875110 AAAATAGGAGAAGCCTATCTCGCAACATAAACCTCATGTCTCAAGACATCCAATAGAACTTTGTA
66 AAAATAGGAGAAGCCTATCTCGCAACATAAACCTCATGTCTCAAGACATCCAATAGAACTTTGTA
22875175 TTGGACCTTGAGGAAT
131 TTGGACCTTGAGGAAT
22875191 A
1 A
22875192 TAGGTACATG
Statistics
Matches: 146, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
146 146 1.00
ACGTcount: A:0.37, C:0.20, G:0.19, T:0.25
Consensus pattern (146 bp):
ACTAAAAATGGGCTATTACAAGGACCCCTTTGTCTCAAGATAGAAAACATTGAAGCTAGGGATCT
AAAATAGGAGAAGCCTATCTCGCAACATAAACCTCATGTCTCAAGACATCCAATAGAACTTTGTA
TTGGACCTTGAGGAAT
Found at i:22879729 original size:40 final size:40
Alignment explanation
Indices: 22879651--22879764 Score: 102
Period size: 40 Copynumber: 2.8 Consensus size: 40
22879641 TCGAAAAAAA
* * * * *
22879651 TCGGCTATTTGTGGCGCTTAGTGTGCGAATCGACATAGCT
1 TCGGCTATATATGGCACTTAGTGTGAGAATCGACATAGCG
* * *
22879691 TCGGCTATATATGGCACTTAGTGTGAGAGTTGAGATAGCG
1 TCGGCTATATATGGCACTTAGTGTGAGAATCGACATAGCG
* * * *
22879731 TCAGCTATGTACGACACTTAGTGTATGAGAATCG
1 TCGGCTATATATGGCACTTAGTG--TGAGAATCG
22879765 GGTATGGCAC
Statistics
Matches: 58, Mismatches: 14, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
40 51 0.88
42 7 0.12
ACGTcount: A:0.24, C:0.17, G:0.29, T:0.31
Consensus pattern (40 bp):
TCGGCTATATATGGCACTTAGTGTGAGAATCGACATAGCG
Found at i:22879806 original size:28 final size:28
Alignment explanation
Indices: 22879761--22879853 Score: 116
Period size: 28 Copynumber: 3.3 Consensus size: 28
22879751 GTGTATGAGA
* *
22879761 ATCGGGTATGGCACTTAGTGTGTGAAAT
1 ATCGAGTATGGCACTTAGTGTGCGAAAT
* * *
22879789 ATCTAGTGTGGCACTTAGTGTGCGAGAT
1 ATCGAGTATGGCACTTAGTGTGCGAAAT
22879817 ATCGAGTATGGCACTTAGTGTGC-AAGAT
1 ATCGAGTATGGCACTTAGTGTGCGAA-AT
*
22879845 ATTGAGTAT
1 ATCGAGTAT
22879854 TCAACTACAT
Statistics
Matches: 55, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
27 1 0.02
28 54 0.98
ACGTcount: A:0.26, C:0.12, G:0.30, T:0.32
Consensus pattern (28 bp):
ATCGAGTATGGCACTTAGTGTGCGAAAT
Found at i:22889087 original size:55 final size:54
Alignment explanation
Indices: 22888863--22889114 Score: 231
Period size: 55 Copynumber: 4.8 Consensus size: 54
22888853 ACACGGGTAC
* *
22888863 CTTACC-ATTGCCAT-TACTTGTCATGGTCTTACGTGGTATCCTT---TT-GAAA
1 CTTACCAATTGCCATGT-CTTGACATGGTCTTACATGGTATCCTTGCCTTAGAAA
*
22888912 CTTACC-ATTGCCATGTCTCGACATGGTCTTACATGGTATCCTTGCCTTATG-AA
1 CTTACCAATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTA-GAAA
* * * * * *
22888965 CTCACCAA-TGTCATGCCTTTG-CATGGTCTTACATGGGA-CCTTTGACTTATAGTAA
1 CTTACCAATTGCCATGTC-TTGACATGGTCTTACATGGTATCC-TTG-CCT-TAGAAA
* * *
22889020 CTTATCAA-TGCCATGTCTTAACATGGTCTTACATGATATCCTTGCCTTAGAAA
1 CTTACCAATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTAGAAA
* *
22889073 CCTTACCAATTGCCATGCCTTGGCATGGTCTTACATGGTATC
1 -CTTACCAATTGCCATGTCTTGACATGGTCTTACATGGTATC
22889115 TTTAAACCCT
Statistics
Matches: 164, Mismatches: 23, Indels: 26
0.77 0.11 0.12
Matches are distributed among these distances:
49 38 0.23
50 1 0.01
52 4 0.02
53 38 0.23
54 18 0.11
55 63 0.38
56 2 0.01
ACGTcount: A:0.23, C:0.25, G:0.17, T:0.36
Consensus pattern (54 bp):
CTTACCAATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTAGAAA
Found at i:22898011 original size:40 final size:40
Alignment explanation
Indices: 22897949--22898166 Score: 316
Period size: 40 Copynumber: 5.5 Consensus size: 40
22897939 AAGCCAAGTA
* * * *
22897949 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCGAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
22897988 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
22898028 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
22898068 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
22898108 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
22898148 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
22898167 TTATCATCCA
Statistics
Matches: 166, Mismatches: 10, Indels: 5
0.92 0.06 0.03
Matches are distributed among these distances:
39 13 0.08
40 153 0.92
ACGTcount: A:0.25, C:0.29, G:0.24, T:0.22
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:22906092 original size:40 final size:40
Alignment explanation
Indices: 22906030--22906285 Score: 369
Period size: 40 Copynumber: 6.5 Consensus size: 40
22906020 AAGCCAAGTA
* * * *
22906030 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCGAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
22906069 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
22906109 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
22906149 CCTTCGGGACTTAGCCCGGATATAGTAACTCG-ACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
22906188 CCTTC-GGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * * *
22906227 CCTTCGGGACTTAGCACGGA-ACTAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
22906267 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
22906286 TTATCATCCA
Statistics
Matches: 200, Mismatches: 12, Indels: 9
0.90 0.05 0.04
Matches are distributed among these distances:
38 26 0.13
39 37 0.19
40 137 0.69
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:22906239 original size:118 final size:120
Alignment explanation
Indices: 22906030--22906285 Score: 369
Period size: 118 Copynumber: 2.2 Consensus size: 120
22906020 AAGCCAAGTA
* * * *
22906030 CCTTCGGGATTTA-ACCGGATATAGCTACTCGCTCGAATGCCTTCGGGACATAGCCCGGATATAG
1 CCTTCGGGACTTAGCCCGGATATAGCTACTCGCACAAATGCCTTCGGGACATAGCCCGGATATAG
* * *
22906094 TAACTCGCACCAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
66 TAACTCGCACAAATGCCTTCGGGACTTAGCACGGA-ACTAGTAACTAGCACAAATG
*
22906149 CCTTCGGGACTTAGCCCGGATATAG-TAACTCG-ACAAATGCCTTC-GGACTTAGCCCGGATATA
1 CCTTCGGGACTTAGCCCGGATATAGCT-ACTCGCACAAATGCCTTCGGGACATAGCCCGGATATA
* *
22906211 GTAACTCGCACAAATGCCTTCGGGACTTAGCACGGAACTAGTCACTAGCGCAAATG
65 GTAACTCGCACAAATGCCTTCGGGACTTAGCACGGAACTAGTAACTAGCACAAATG
22906267 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
22906286 TTATCATCCA
Statistics
Matches: 124, Mismatches: 10, Indels: 7
0.88 0.07 0.05
Matches are distributed among these distances:
117 1 0.01
118 85 0.69
119 23 0.19
120 15 0.12
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (120 bp):
CCTTCGGGACTTAGCCCGGATATAGCTACTCGCACAAATGCCTTCGGGACATAGCCCGGATATAG
TAACTCGCACAAATGCCTTCGGGACTTAGCACGGAACTAGTAACTAGCACAAATG
Found at i:22907560 original size:6 final size:6
Alignment explanation
Indices: 22907542--22907580 Score: 53
Period size: 6 Copynumber: 6.7 Consensus size: 6
22907532 CATGAGAGCC
* *
22907542 TTTCTT TTT-TT TTTCTT TTTCTT TCTCTT TTCCTT TTTC
1 TTTCTT TTTCTT TTTCTT TTTCTT TTTCTT TTTCTT TTTC
22907581 ATCATCATTT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
5 5 0.18
6 23 0.82
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (6 bp):
TTTCTT
Found at i:22913809 original size:27 final size:26
Alignment explanation
Indices: 22913778--22913955 Score: 178
Period size: 27 Copynumber: 6.6 Consensus size: 26
22913768 TAAATTGTAC
22913778 AGCACTAAGTGTGCGATTCGACTATGT
1 AGCACTAAGTGTGCGATT-GACTATGT
* * *
22913805 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCG-ATTGACTATGT
* *
22913831 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCG-ATTGACTATGT
*
22913859 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA--TTGACTATGT
* *
22913887 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGA-TTGACTATGT
* *
22913914 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGA-TTGACTATGT
*
22913941 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
22913956 GGCTCAATAT
Statistics
Matches: 129, Mismatches: 17, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
26 1 0.01
27 103 0.80
28 25 0.19
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (26 bp):
AGCACTAAGTGTGCGATTGACTATGT
Found at i:22913894 original size:82 final size:81
Alignment explanation
Indices: 22913779--22913934 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
22913769 AAATTGTACA
* *
22913779 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
22913843 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
* ** *
22913860 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
22913925 TGCGAGTTGA
65 TGCGAATTGA
22913935 TTATATAGCA
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 15 0.23
82 50 0.76
83 1 0.02
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:22913946 original size:82 final size:81
Alignment explanation
Indices: 22913775--22913955 Score: 220
Period size: 82 Copynumber: 2.2 Consensus size: 81
22913765 GATTAAATTG
* *
22913775 TACAGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
22913840 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * * ** *
22913856 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
22913920 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
22913938 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
22913956 GGCTCAATAT
Statistics
Matches: 83, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
81 18 0.22
82 65 0.78
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:22913966 original size:27 final size:27
Alignment explanation
Indices: 22913860--22913966 Score: 70
Period size: 27 Copynumber: 3.9 Consensus size: 27
22913850 TGACCATGCG
* * * *
22913860 GCACTAAGTGTGCGAGTTTGACTATGTA
1 GCACTAAGTGTGCGAG-CTCAATATATA
** * * **
22913888 GCACTAAGTGTGCGATTTGATTACGTA
1 GCACTAAGTGTGCGAGCTCAATATATA
* * *
22913915 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGAGCTCAATATATA
* *
22913942 GCACTGAGTGTGCGGGCTCAATATA
1 GCACTAAGTGTGCGAGCTCAATATA
22913967 CATTCGTGAA
Statistics
Matches: 68, Mismatches: 11, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
27 53 0.78
28 15 0.22
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.31
Consensus pattern (27 bp):
GCACTAAGTGTGCGAGCTCAATATATA
Found at i:22921715 original size:27 final size:26
Alignment explanation
Indices: 22921684--22921861 Score: 178
Period size: 27 Copynumber: 6.6 Consensus size: 26
22921674 TAAATTGTAC
22921684 AGCACTAAGTGTGCGATTCGACTATGT
1 AGCACTAAGTGTGCGATT-GACTATGT
* * *
22921711 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCG-ATTGACTATGT
* *
22921737 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCG-ATTGACTATGT
*
22921765 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA--TTGACTATGT
* *
22921793 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGA-TTGACTATGT
* *
22921820 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGA-TTGACTATGT
*
22921847 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
22921862 GGCTCAATAT
Statistics
Matches: 129, Mismatches: 17, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
26 1 0.01
27 103 0.80
28 25 0.19
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (26 bp):
AGCACTAAGTGTGCGATTGACTATGT
Found at i:22921800 original size:82 final size:81
Alignment explanation
Indices: 22921685--22921840 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
22921675 AAATTGTACA
* *
22921685 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
22921749 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
* ** *
22921766 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
22921831 TGCGAGTTGA
65 TGCGAATTGA
22921841 TTATATAGCA
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 15 0.23
82 50 0.76
83 1 0.02
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:22921852 original size:82 final size:81
Alignment explanation
Indices: 22921681--22921861 Score: 220
Period size: 82 Copynumber: 2.2 Consensus size: 81
22921671 GATTAAATTG
* *
22921681 TACAGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
22921746 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * * ** *
22921762 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
22921826 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
22921844 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
22921862 GGCTCAATAT
Statistics
Matches: 83, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
81 18 0.22
82 65 0.78
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:22921872 original size:27 final size:27
Alignment explanation
Indices: 22921766--22921872 Score: 70
Period size: 27 Copynumber: 3.9 Consensus size: 27
22921756 TGACCATGCG
* * * *
22921766 GCACTAAGTGTGCGAGTTTGACTATGTA
1 GCACTAAGTGTGCGAG-CTCAATATATA
** * * **
22921794 GCACTAAGTGTGCGATTTGATTACGTA
1 GCACTAAGTGTGCGAGCTCAATATATA
* * *
22921821 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGAGCTCAATATATA
* *
22921848 GCACTGAGTGTGCGGGCTCAATATA
1 GCACTAAGTGTGCGAGCTCAATATA
22921873 CATTCGTGAA
Statistics
Matches: 68, Mismatches: 11, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
27 53 0.78
28 15 0.22
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.31
Consensus pattern (27 bp):
GCACTAAGTGTGCGAGCTCAATATATA
Found at i:22926038 original size:28 final size:27
Alignment explanation
Indices: 22925980--22926187 Score: 326
Period size: 28 Copynumber: 7.6 Consensus size: 27
22925970 TAAATTGTGC
*
22925980 AGCACTAAGTGTGCGAATTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
22926007 AGCACTAAGTGTGCGAGTCTGACTATGT
1 AGCACTAAGTGTGCGAGT-TGACTATGT
22926035 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
22926063 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
*
22926091 AGCACTAAGTGTGCTAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
22926118 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
* *
22926146 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
22926173 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
22926188 GACTTAATAT
Statistics
Matches: 172, Mismatches: 6, Indels: 6
0.93 0.03 0.03
Matches are distributed among these distances:
27 66 0.38
28 105 0.61
29 1 0.01
ACGTcount: A:0.26, C:0.14, G:0.28, T:0.31
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGACTATGT
Found at i:22926045 original size:55 final size:55
Alignment explanation
Indices: 22925980--22926187 Score: 344
Period size: 55 Copynumber: 3.8 Consensus size: 55
22925970 TAAATTGTGC
* *
22925980 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTCTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
22926035 AGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
* *
22926091 AGCACTAAGTGTGCTAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
* * *
22926146 AGCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCG
22926188 GACTTAATAT
Statistics
Matches: 144, Mismatches: 8, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
55 91 0.63
56 53 0.37
ACGTcount: A:0.26, C:0.14, G:0.28, T:0.31
Consensus pattern (55 bp):
AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
Found at i:22926122 original size:83 final size:83
Alignment explanation
Indices: 22925980--22926187 Score: 346
Period size: 83 Copynumber: 2.5 Consensus size: 83
22925970 TAAATTGTGC
*
22925980 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTCTGACTATGTAGCACTAAGT
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTCTGACTATGTAGCACTAAGT
22926045 GTGCGAGTTTGACTATGT
66 GTGCGAGTTTGACTATGT
*
22926063 AGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCTAGT-TGACTATGTAGCACTAAG
1 AGCACTAAGTGTGCGAG-TTGACTATGTAGCACTAAGTGTGCGAGTCTGACTATGTAGCACTAAG
*
22926127 TGTGCGAGTTTGATTATGT
65 TGTGCGAGTTTGACTATGT
* * *
22926146 AGCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCG
22926188 GACTTAATAT
Statistics
Matches: 117, Mismatches: 7, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
82 21 0.18
83 69 0.59
84 27 0.23
ACGTcount: A:0.26, C:0.14, G:0.28, T:0.31
Consensus pattern (83 bp):
AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTCTGACTATGTAGCACTAAGT
GTGCGAGTTTGACTATGT
Found at i:22930622 original size:43 final size:43
Alignment explanation
Indices: 22930531--22930630 Score: 121
Period size: 43 Copynumber: 2.3 Consensus size: 43
22930521 AGATGTGATT
* * * * *
22930531 ACATGTAAGACCATGTCTGGGACATTGGCATCGTTAATCGATT
1 ACATGTAAGACCATGTCTAGGACAGTGGCATCGGTAATAGATA
* *
22930574 TCATGTAAGACCTTGTCTAGGACAGTGGCATCGGT-ATGAGATA
1 ACATGTAAGACCATGTCTAGGACAGTGGCATCGGTAAT-AGATA
22930617 ACATGTAAGACCAT
1 ACATGTAAGACCAT
22930631 TCATGGGATA
Statistics
Matches: 47, Mismatches: 9, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
42 2 0.04
43 45 0.96
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.28
Consensus pattern (43 bp):
ACATGTAAGACCATGTCTAGGACAGTGGCATCGGTAATAGATA
Found at i:22940018 original size:43 final size:43
Alignment explanation
Indices: 22939929--22940043 Score: 126
Period size: 43 Copynumber: 2.7 Consensus size: 43
22939919 TATCATTACA
* * * *
22939929 TGTAAGACCATGTTTGGGACATTGGTATTGTATTGAGATTATG
1 TGTAAGACCATGTATGGGACATTGGCATCGTAATGAGATTATG
* *
22939972 TGTAAGACCATGTCTGGGACATTGGCATCGTTAAT-CGATT-TCG
1 TGTAAGACCATGTATGGGACATTGGCATCG-TAATGAGATTAT-G
* *
22940015 TGTAAGACCCTGTATGGGACAGTGGCATC
1 TGTAAGACCATGTATGGGACATTGGCATC
22940044 AATATGAGAT
Statistics
Matches: 62, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
42 1 0.02
43 58 0.94
44 3 0.05
ACGTcount: A:0.24, C:0.15, G:0.28, T:0.33
Consensus pattern (43 bp):
TGTAAGACCATGTATGGGACATTGGCATCGTAATGAGATTATG
Found at i:22943903 original size:39 final size:39
Alignment explanation
Indices: 22943699--22943919 Score: 196
Period size: 40 Copynumber: 5.6 Consensus size: 39
22943689 TTGAATGCTG
* * * * *
22943699 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTA-AGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGA-T-ACTAAA
**
22943739 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATAC-AAA
1 TCCGGGTTAAG-TCCCGAAGGCA-TTGTGCGAGATACTAAA
* *
22943778 TTCCGGGTTAAGCCCCGAAGGACTTTGTGCGAGATACTAAA
1 -TCCGGGTTAAGTCCCGAAGG-CATTGTGCGAGATACTAAA
* **
22943819 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGATACTAAA
* * *
22943859 TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGATACTAAA
* * *
22943898 ACCGGGCTATGTCCCGAAGGCA
1 TCCGGGTTAAGTCCCGAAGGCA
22943920 ATTGAACGAG
Statistics
Matches: 153, Mismatches: 20, Indels: 17
0.81 0.11 0.09
Matches are distributed among these distances:
39 37 0.24
40 102 0.67
41 13 0.08
42 1 0.01
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (39 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGATACTAAA
Found at i:22943941 original size:79 final size:80
Alignment explanation
Indices: 22943779--22943956 Score: 191
Period size: 79 Copynumber: 2.2 Consensus size: 80
22943769 AGATACAAAT
* * * *
22943779 TCCGGGTTAAGCCCCGAAGGACTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGACATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
** ** *
22943844 GTGCGAGTTGTTAAA
66 GAACGAGGAGCTAAA
* * * *
22943859 TCCGGGTTATGTCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCAATT
1 TCCGGGTTAAGTCCCGAAGGACATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGC-ATT
*
22943923 -GAACGAGGAGCTATA
65 CGAACGAGGAGCTAAA
*
22943938 TCC-GGTTAAATCCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
22943957 TACCTGATTT
Statistics
Matches: 81, Mismatches: 16, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
78 14 0.17
79 46 0.57
80 21 0.26
ACGTcount: A:0.26, C:0.21, G:0.29, T:0.24
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGACATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
GAACGAGGAGCTAAA
Found at i:22953231 original size:24 final size:24
Alignment explanation
Indices: 22953184--22953231 Score: 78
Period size: 24 Copynumber: 2.0 Consensus size: 24
22953174 AAGTAGGGTT
* *
22953184 CATGTTTAAAAATTTACTCGTGTG
1 CATGTTTAAAAATTTACCCATGTG
22953208 CATGTTTAAAAATTTACCCATGTG
1 CATGTTTAAAAATTTACCCATGTG
22953232 TGACATGCAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.40
Consensus pattern (24 bp):
CATGTTTAAAAATTTACCCATGTG
Found at i:22955222 original size:37 final size:37
Alignment explanation
Indices: 22955174--22955434 Score: 423
Period size: 37 Copynumber: 7.1 Consensus size: 37
22955164 CTTTAGCTCA
* * * *
22955174 GACAAAATCTCCACACGAAGTTATCGGGTCTTACCCA
1 GACATAATCTCCACACGTAGTCATCGGGTCTTACCCG
* *
22955211 GACAAAATCTCCACATGTAGTCATCGGGTCTTACCCG
1 GACATAATCTCCACACGTAGTCATCGGGTCTTACCCG
*
22955248 GACATAATCTTCACACGTAGTCATCGGGTCTTACCCG
1 GACATAATCTCCACACGTAGTCATCGGGTCTTACCCG
22955285 GACATAATCTCCACACGTAGTCATCGGGTCTTACCCG
1 GACATAATCTCCACACGTAGTCATCGGGTCTTACCCG
* *
22955322 GATATAATCTCCACACGTAGTCATCGGGTCTTACCTG
1 GACATAATCTCCACACGTAGTCATCGGGTCTTACCCG
* *
22955359 GACATAATCTTCACATGTAGTCATCGGGTCTTACCCG
1 GACATAATCTCCACACGTAGTCATCGGGTCTTACCCG
22955396 GACATAATCTCCACACGTAGTCATCGGGTCTTACCCG
1 GACATAATCTCCACACGTAGTCATCGGGTCTTACCCG
22955433 GA
1 GA
22955435 ATATATTTCC
Statistics
Matches: 208, Mismatches: 16, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 208 1.00
ACGTcount: A:0.26, C:0.30, G:0.19, T:0.26
Consensus pattern (37 bp):
GACATAATCTCCACACGTAGTCATCGGGTCTTACCCG
Found at i:22955700 original size:47 final size:47
Alignment explanation
Indices: 22955639--22955823 Score: 289
Period size: 47 Copynumber: 3.9 Consensus size: 47
22955629 TACATATATT
* * * *
22955639 TCACATTAGCCATTCGGCTTTACCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* *
22955686 TCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
*
22955733 TCACATTGGCCATTTGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
**
22955780 TCACATTGGCCATTCGGCCTTATCACATATATGCACATTCACAT
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACAT
22955824 CACAATTATC
Statistics
Matches: 126, Mismatches: 12, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 126 1.00
ACGTcount: A:0.26, C:0.28, G:0.12, T:0.34
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:22955759 original size:22 final size:22
Alignment explanation
Indices: 22955732--22955807 Score: 64
Period size: 22 Copynumber: 3.3 Consensus size: 22
22955722 GCTCACATTC
22955732 ATCACATTGGCCATTTGGCCTT
1 ATCACATTGGCCATTTGGCCTT
* ** *
22955754 ATCACATATATG-CATGTTCACATT
1 ATCACAT-T-GGCCAT-TTGGCCTT
*
22955778 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTTGGCCTT
22955801 ATCACAT
1 ATCACAT
22955808 ATATGCACAT
Statistics
Matches: 40, Mismatches: 9, Indels: 10
0.68 0.15 0.17
Matches are distributed among these distances:
22 14 0.35
23 9 0.22
24 10 0.25
25 7 0.17
ACGTcount: A:0.25, C:0.28, G:0.13, T:0.34
Consensus pattern (22 bp):
ATCACATTGGCCATTTGGCCTT
Done.