Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 82679320
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4050000 characters in sequence are not A, C, G, or T
File 77 of 255
Found at i:22958743 original size:30 final size:30
Alignment explanation
Indices: 22958709--22958777 Score: 111
Period size: 30 Copynumber: 2.3 Consensus size: 30
22958699 GTGTGTCTCA
22958709 GCCGTGTGTGACACACGGCCAAATAACACG
1 GCCGTGTGTGACACACGGCCAAATAACACG
* * *
22958739 GCCGTTTGTGACATACGGCCAAGTAACACG
1 GCCGTGTGTGACACACGGCCAAATAACACG
22958769 GCCGTGTGT
1 GCCGTGTGT
22958778 CCCCTGTAGT
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 35 1.00
ACGTcount: A:0.25, C:0.28, G:0.29, T:0.19
Consensus pattern (30 bp):
GCCGTGTGTGACACACGGCCAAATAACACG
Found at i:22960277 original size:27 final size:27
Alignment explanation
Indices: 22960240--22960321 Score: 92
Period size: 27 Copynumber: 3.0 Consensus size: 27
22960230 ATCTCTATTC
*
22960240 AAGACAGTCCTGACAGACTTCCACATT
1 AAGACAATCCTGACAGACTTCCACATT
* ** * *
22960267 AAGATAATCCTGATGGACATCCCCATTT
1 AAGACAATCCTGACAGACTTCCACA-TT
*
22960295 AAGACAATCCTGACAAACTTCCACATT
1 AAGACAATCCTGACAGACTTCCACATT
22960322 TACGGTAATG
Statistics
Matches: 42, Mismatches: 12, Indels: 2
0.75 0.21 0.04
Matches are distributed among these distances:
27 21 0.50
28 21 0.50
ACGTcount: A:0.35, C:0.28, G:0.12, T:0.24
Consensus pattern (27 bp):
AAGACAATCCTGACAGACTTCCACATT
Found at i:22960284 original size:55 final size:57
Alignment explanation
Indices: 22960196--22960321 Score: 168
Period size: 55 Copynumber: 2.3 Consensus size: 57
22960186 TGGTGGACTC
* * * * *
22960196 ACAGATTTCCAC-TTATATGATAGTCCTGATGGACATCTCTATTCAAGACAGTCCTG
1 ACAGACTTCCACATTATATGATAATCCTGATGGACATCCCCATTCAAGACAATCCTG
*
22960252 ACAGACTTCCACATTA-A-GATAATCCTGATGGACATCCCCATTTAAGACAATCCTG
1 ACAGACTTCCACATTATATGATAATCCTGATGGACATCCCCATTCAAGACAATCCTG
*
22960307 ACAAACTTCCACATT
1 ACAGACTTCCACATT
22960322 TACGGTAATG
Statistics
Matches: 62, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
55 47 0.76
56 12 0.19
57 3 0.05
ACGTcount: A:0.33, C:0.26, G:0.13, T:0.29
Consensus pattern (57 bp):
ACAGACTTCCACATTATATGATAATCCTGATGGACATCCCCATTCAAGACAATCCTG
Found at i:22960303 original size:28 final size:28
Alignment explanation
Indices: 22960219--22960307 Score: 90
Period size: 28 Copynumber: 3.2 Consensus size: 28
22960209 TATATGATAG
* * * *
22960219 TCCTGATGGACATCTCTATTCAAGACAG
1 TCCTGATGGACATCCCCATTTAAGACAA
** * * *
22960247 TCCTGACAGACTTCCACA-TTAAGATAA
1 TCCTGATGGACATCCCCATTTAAGACAA
22960274 TCCTGATGGACATCCCCATTTAAGACAA
1 TCCTGATGGACATCCCCATTTAAGACAA
22960302 TCCTGA
1 TCCTGA
22960308 CAAACTTCCA
Statistics
Matches: 46, Mismatches: 14, Indels: 2
0.74 0.23 0.03
Matches are distributed among these distances:
27 20 0.43
28 26 0.57
ACGTcount: A:0.31, C:0.27, G:0.15, T:0.27
Consensus pattern (28 bp):
TCCTGATGGACATCCCCATTTAAGACAA
Found at i:22960321 original size:28 final size:28
Alignment explanation
Indices: 22960240--22960323 Score: 98
Period size: 28 Copynumber: 3.0 Consensus size: 28
22960230 ATCTCTATTC
*
22960240 AAGACAGTCCTGACAGACTTCCACA-TT
1 AAGACAATCCTGACAGACTTCCACATTT
* ** * *
22960267 AAGATAATCCTGATGGACATCCCCATTT
1 AAGACAATCCTGACAGACTTCCACATTT
*
22960295 AAGACAATCCTGACAAACTTCCACATTT
1 AAGACAATCCTGACAGACTTCCACATTT
22960323 A
1 A
22960324 CGGTAATGCC
Statistics
Matches: 44, Mismatches: 12, Indels: 1
0.77 0.21 0.02
Matches are distributed among these distances:
27 19 0.43
28 25 0.57
ACGTcount: A:0.36, C:0.27, G:0.12, T:0.25
Consensus pattern (28 bp):
AAGACAATCCTGACAGACTTCCACATTT
Found at i:22963138 original size:18 final size:18
Alignment explanation
Indices: 22963115--22963170 Score: 69
Period size: 18 Copynumber: 3.1 Consensus size: 18
22963105 AGCCCATTTT
22963115 AGTAACAGTAATCAGTGC
1 AGTAACAGTAATCAGTGC
* * *
22963133 AGTAACCA-TGATCAATGT
1 AGTAA-CAGTAATCAGTGC
22963151 AGTAACAGTAATCAGTGC
1 AGTAACAGTAATCAGTGC
22963169 AG
1 AG
22963171 CACGCAAGCA
Statistics
Matches: 30, Mismatches: 6, Indels: 4
0.75 0.15 0.10
Matches are distributed among these distances:
17 2 0.07
18 26 0.87
19 2 0.07
ACGTcount: A:0.39, C:0.16, G:0.21, T:0.23
Consensus pattern (18 bp):
AGTAACAGTAATCAGTGC
Found at i:22963528 original size:27 final size:27
Alignment explanation
Indices: 22963489--22963602 Score: 90
Period size: 27 Copynumber: 4.2 Consensus size: 27
22963479 CAAATATGAA
* *
22963489 ATTTTACCTTACAGAGGTATTACAGTC
1 ATTTTACCCTACAGAGGTATTTCAGTC
*
22963516 ATTTTACCCTACA-AGGGTATTTCGGTC
1 ATTTTACCCTACAGA-GGTATTTCAGTC
* * ** * *
22963543 GTTCTACCCTATGGGGGTGTTTCAGTC
1 ATTTTACCCTACAGAGGTATTTCAGTC
*
22963570 ATTTTACCCCATA-AG-GGTATTTCGGTC
1 ATTTTA-CCC-TACAGAGGTATTTCAGTC
22963597 ATTTTA
1 ATTTTA
22963603 TCACATAAGG
Statistics
Matches: 68, Mismatches: 15, Indels: 8
0.75 0.16 0.09
Matches are distributed among these distances:
26 1 0.01
27 61 0.90
28 4 0.06
29 2 0.03
ACGTcount: A:0.22, C:0.20, G:0.19, T:0.39
Consensus pattern (27 bp):
ATTTTACCCTACAGAGGTATTTCAGTC
Found at i:22963609 original size:27 final size:26
Alignment explanation
Indices: 22963557--22963639 Score: 78
Period size: 27 Copynumber: 3.1 Consensus size: 26
22963547 TACCCTATGG
* * *
22963557 GGGTGTTTCAGTCATTTTACCCCATAA
1 GGGTATTTC-GTCATTTTATCACATAA
22963584 GGGTATTTCGGTCATTTTATCACATAA
1 GGGTATTTC-GTCATTTTATCACATAA
* *
22963611 GGGCAAAATT-GTCATTTTATCACATAA
1 GGG--TATTTCGTCATTTTATCACATAA
22963638 GG
1 GG
22963640 ATTCAAGTAT
Statistics
Matches: 48, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
27 45 0.94
29 3 0.06
ACGTcount: A:0.28, C:0.17, G:0.19, T:0.36
Consensus pattern (26 bp):
GGGTATTTCGTCATTTTATCACATAA
Found at i:22966731 original size:18 final size:18
Alignment explanation
Indices: 22966708--22966766 Score: 57
Period size: 18 Copynumber: 3.3 Consensus size: 18
22966698 TAGCCCATTT
22966708 TAGTAACAGTAATCAGTG
1 TAGTAACAGTAATCAGTG
* *
22966726 TAGTAACCA-TGATCAATG
1 TAGTAA-CAGTAATCAGTG
* *
22966744 CAGTAACAGTAACCAGTG
1 TAGTAACAGTAATCAGTG
*
22966762 GAGTA
1 TAGTA
22966767 TGCAAGTATA
Statistics
Matches: 32, Mismatches: 7, Indels: 4
0.74 0.16 0.09
Matches are distributed among these distances:
17 2 0.06
18 28 0.88
19 2 0.06
ACGTcount: A:0.39, C:0.15, G:0.22, T:0.24
Consensus pattern (18 bp):
TAGTAACAGTAATCAGTG
Found at i:22967200 original size:27 final size:26
Alignment explanation
Indices: 22967098--22967213 Score: 117
Period size: 27 Copynumber: 4.3 Consensus size: 26
22967088 AACAAATCTA
* *
22967098 TCATTTTACCTTACCGGGGTATTATA-G
1 TCATTTTACCCTA-AGGGGTATT-TAGG
*
22967125 TCATTTTACCCTATAGGGGTATTTTGG
1 TCATTTTACCCTA-AGGGGTATTTAGG
* *
22967152 TCATTCTACCCTATGGGCGTATTTAGG
1 TCATTTTACCCTAAGGG-GTATTTAGG
* *
22967179 TCATTTTACCCTAAGATGGTATTTCGG
1 TCATTTTACCCTAAG-GGGTATTTAGG
22967206 TCATTTTA
1 TCATTTTA
22967214 TCACATAAGG
Statistics
Matches: 75, Mismatches: 11, Indels: 6
0.82 0.12 0.07
Matches are distributed among these distances:
26 4 0.05
27 70 0.93
28 1 0.01
ACGTcount: A:0.21, C:0.18, G:0.19, T:0.42
Consensus pattern (26 bp):
TCATTTTACCCTAAGGGGTATTTAGG
Found at i:22970230 original size:18 final size:17
Alignment explanation
Indices: 22970194--22970250 Score: 69
Period size: 18 Copynumber: 3.2 Consensus size: 17
22970184 AGCCCATTTT
22970194 AGTAACAATAATCATGC
1 AGTAACAATAATCATGC
* *
22970211 AGTAACCATGATCAATGC
1 AGTAACAATAATC-ATGC
*
22970229 AGTAACAGTAATCAGTGC
1 AGTAACAATAATCA-TGC
22970247 AGTA
1 AGTA
22970251 TGCAAGAAGA
Statistics
Matches: 33, Mismatches: 5, Indels: 3
0.80 0.12 0.07
Matches are distributed among these distances:
17 12 0.36
18 21 0.64
ACGTcount: A:0.42, C:0.18, G:0.18, T:0.23
Consensus pattern (17 bp):
AGTAACAATAATCATGC
Found at i:22970627 original size:27 final size:28
Alignment explanation
Indices: 22970597--22970699 Score: 126
Period size: 27 Copynumber: 3.8 Consensus size: 28
22970587 TTACCTTACC
* *
22970597 GGGGTATTAT-AGTCATTTTAACCTATA
1 GGGGTATTATCGGTCATTTTACCCTATA
*
22970624 GGGGTA-TATCGGTCATTCTACCCTATA
1 GGGGTATTATCGGTCATTTTACCCTATA
*
22970651 GGGTTATT-TCGGTCATTTTACCCTAT-
1 GGGGTATTATCGGTCATTTTACCCTATA
22970677 GAGGGTATT-TCGGTCATTTTACC
1 G-GGGTATTATCGGTCATTTTACC
22970700 AAATAAGGGT
Statistics
Matches: 67, Mismatches: 6, Indels: 6
0.85 0.08 0.08
Matches are distributed among these distances:
26 4 0.06
27 62 0.93
28 1 0.01
ACGTcount: A:0.21, C:0.17, G:0.21, T:0.40
Consensus pattern (28 bp):
GGGGTATTATCGGTCATTTTACCCTATA
Found at i:22970708 original size:27 final size:27
Alignment explanation
Indices: 22970608--22970710 Score: 127
Period size: 27 Copynumber: 3.8 Consensus size: 27
22970598 GGGTATTATA
* * *
22970608 GTCATTTTAACCTATAGGGGTATATCG
1 GTCATTTTACCCTATAAGGGTATTTCG
*
22970635 GTCATTCTACCCTAT-AGGGTTATTTCG
1 GTCATTTTACCCTATAAGGG-TATTTCG
*
22970662 GTCATTTTACCCTATGAGGGTATTTCG
1 GTCATTTTACCCTATAAGGGTATTTCG
**
22970689 GTCATTTTACCAAATAAGGGTA
1 GTCATTTTACCCTATAAGGGTA
22970711 AAATCATCAT
Statistics
Matches: 66, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
26 3 0.05
27 59 0.89
28 4 0.06
ACGTcount: A:0.24, C:0.17, G:0.20, T:0.38
Consensus pattern (27 bp):
GTCATTTTACCCTATAAGGGTATTTCG
Found at i:22975061 original size:38 final size:38
Alignment explanation
Indices: 22975018--22975194 Score: 291
Period size: 38 Copynumber: 4.7 Consensus size: 38
22975008 CAAGGCCTGA
* * * *
22975018 ATATAATACCAGTACTAGGCCTGCAGGATTTAACCCGG
1 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGG
22975056 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGG
1 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGG
*
22975094 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGG
1 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGG
* *
22975132 ATATATTACCAGCACGAAGCCTGCGAGATTTAACCCGG
1 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGG
22975170 ATATAATACCAGCACGAAGCCTGCG
1 ATATAATACCAGCACGAAGCCTGCG
22975195 AGTCTTTAAG
Statistics
Matches: 132, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 132 1.00
ACGTcount: A:0.32, C:0.26, G:0.22, T:0.20
Consensus pattern (38 bp):
ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGG
Found at i:22984751 original size:48 final size:48
Alignment explanation
Indices: 22984676--22984944 Score: 322
Period size: 48 Copynumber: 5.6 Consensus size: 48
22984666 AGATCCTGTT
*
22984676 TAAGACCATGTCTGGGACATGGAATCGGCGTTGATATGTATGCCAGTG
1 TAAGACCATGTCTGGGACATGGCATCGGCGTTGATATGTATGCCAGTG
* * *
22984724 TAAGACCATGCCTGGGACATCGCATCGGCATTGATATGTATGCCAGTG
1 TAAGACCATGTCTGGGACATGGCATCGGCGTTGATATGTATGCCAGTG
* * * *
22984772 GAAGACCATGTCCGGGACATGGCATCGACGTTGATATGTATGCCCGTG
1 TAAGACCATGTCTGGGACATGGCATCGGCGTTGATATGTATGCCAGTG
* * * * **
22984820 TAAGACCATGTTTGGGACATGGCATTGGGGTTGATATGCATGTTAGTG
1 TAAGACCATGTCTGGGACATGGCATCGGCGTTGATATGTATGCCAGTG
* ** * * * *
22984868 CAAGACCATGTCTGGGACATGGCATTAGTGATGATATGTGTGCAAGTG
1 TAAGACCATGTCTGGGACATGGCATCGGCGTTGATATGTATGCCAGTG
* * *
22984916 TAAGACCATGTCTAGAACATGGTATCGGC
1 TAAGACCATGTCTGGGACATGGCATCGGC
22984945 ACCAATATGT
Statistics
Matches: 184, Mismatches: 37, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
48 184 1.00
ACGTcount: A:0.25, C:0.18, G:0.30, T:0.27
Consensus pattern (48 bp):
TAAGACCATGTCTGGGACATGGCATCGGCGTTGATATGTATGCCAGTG
Found at i:22984953 original size:144 final size:144
Alignment explanation
Indices: 22984667--22984972 Score: 321
Period size: 144 Copynumber: 2.1 Consensus size: 144
22984657 TGGTTAGTGA
* * * *
22984667 GATCCTGTTTAAGACCATGTCTGGGACATGGAATCGGCGTTGATATGTATGCCAGTGTAAGACCA
1 GATCCCGTATAAGACCATGTCTGGGACATGGAATCGGCGTTGATATGCATGCCAGTGCAAGACCA
* * * *
22984732 TGCCTGGGACATCGCATCGGCATTGATATGTATGCCAGTGGAAGACCATGTCCGGGACATGGCAT
66 TGCCTGGGACATCGCATAGGCATTGATATGTATGCAAGTGGAAGACCATGTCCAGAACATGGCAT
****
22984797 CGACGTTGATATGT
131 CGACACCAATATGT
* * * * * **
22984811 -ATGCCCGTGTAAGACCATGTTTGGGACATGGCATTGGGGTTGATATGCATGTTAGTGCAAGACC
1 GAT-CCCGTATAAGACCATGTCTGGGACATGGAATCGGCGTTGATATGCATGCCAGTGCAAGACC
* * * * *
22984875 ATGTCTGGGACATGGCATTAGTG-A-TGATATGTGTGCAAGTGTAAGACCATGTCTAGAACATGG
65 ATGCCTGGGACATCGCA-TAG-GCATTGATATGTATGCAAGTGGAAGACCATGTCCAGAACATGG
* *
22984938 TATCGGCACCAATATGT
128 CATCGACACCAATATGT
*
22984955 GATCCCGTAAAAGACCAT
1 GATCCCGTATAAGACCAT
22984973 ATCAGTGATC
Statistics
Matches: 131, Mismatches: 27, Indels: 8
0.79 0.16 0.05
Matches are distributed among these distances:
143 2 0.02
144 123 0.94
145 5 0.04
146 1 0.01
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.27
Consensus pattern (144 bp):
GATCCCGTATAAGACCATGTCTGGGACATGGAATCGGCGTTGATATGCATGCCAGTGCAAGACCA
TGCCTGGGACATCGCATAGGCATTGATATGTATGCAAGTGGAAGACCATGTCCAGAACATGGCAT
CGACACCAATATGT
Found at i:22988868 original size:12 final size:12
Alignment explanation
Indices: 22988851--22988891 Score: 52
Period size: 12 Copynumber: 3.7 Consensus size: 12
22988841 CACTTTATTA
22988851 ATAAACATTCTC
1 ATAAACATTCTC
*
22988863 ATAAACA---TA
1 ATAAACATTCTC
22988872 ATAAACATTCTC
1 ATAAACATTCTC
22988884 ATAAACAT
1 ATAAACAT
22988892 ACTTACTTCA
Statistics
Matches: 24, Mismatches: 2, Indels: 6
0.75 0.06 0.19
Matches are distributed among these distances:
9 8 0.33
12 16 0.67
ACGTcount: A:0.51, C:0.20, G:0.00, T:0.29
Consensus pattern (12 bp):
ATAAACATTCTC
Found at i:22988873 original size:21 final size:21
Alignment explanation
Indices: 22988849--22988892 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
22988839 ATCACTTTAT
22988849 TAATAAACATTCTCATAAACA
1 TAATAAACATTCTCATAAACA
22988870 TAATAAACATTCTCATAAACA
1 TAATAAACATTCTCATAAACA
22988891 TA
1 TA
22988893 CTTACTTCAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.52, C:0.18, G:0.00, T:0.30
Consensus pattern (21 bp):
TAATAAACATTCTCATAAACA
Found at i:22989169 original size:40 final size:40
Alignment explanation
Indices: 22989124--22989395 Score: 352
Period size: 40 Copynumber: 6.8 Consensus size: 40
22989114 ATAACCACAA
* * * *
22989124 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
22989164 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* * *
22989204 GCACAAATGCCGTCGGGTCTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATATCAACTC
* * *
22989244 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGT-AACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATA-TCAACTC
22989284 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* * *
22989324 GTACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATATCAACTC
* * *
22989364 GCATAAAGGCCTTCGGGACTTAGCCCGGATAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAT
22989396 CATTCAAATG
Statistics
Matches: 203, Mismatches: 24, Indels: 11
0.85 0.10 0.05
Matches are distributed among these distances:
39 4 0.02
40 191 0.94
41 8 0.04
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
Found at i:22989321 original size:120 final size:120
Alignment explanation
Indices: 22989104--22989391 Score: 470
Period size: 120 Copynumber: 2.4 Consensus size: 120
22989094 TCTTCGGAAT
* * *
22989104 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCAC
1 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCAC
22989168 AAATGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAATGCCGTCGGGTC
66 AAATGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAATGCCGTCGGGTC
*
22989223 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGTAACTCGCAC
1 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCAC
* *
22989288 AAATGCCTTCGGGTCTTAGCCCGGATATATCAACTCGTACAAATGCCTTCGGGTC
66 AAATGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAATGCCGTCGGGTC
* ** * *
22989343 TTAGCCCGGATAAAATCACTAGCATAAAGGCCTTCGGGACTTAGCCCGG
1 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGG
22989392 ATATCATTCA
Statistics
Matches: 157, Mismatches: 11, Indels: 1
0.93 0.07 0.01
Matches are distributed among these distances:
119 4 0.03
120 153 0.97
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (120 bp):
TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCAC
AAATGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAATGCCGTCGGGTC
Found at i:22994483 original size:40 final size:39
Alignment explanation
Indices: 22994399--22994583 Score: 185
Period size: 40 Copynumber: 4.6 Consensus size: 39
22994389 TCGAATGATG
* * * *
22994399 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
22994439 TCCGGACTAAGATCCGAAGGCATTTGTGTGAGTTACTAAT
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
* *
22994479 TCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
22994518 TCCGGGTTAAGTCCCGAAGGCATTTGTCCGATTTACTATAA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTA-AA
*
22994559 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGT-CCGAAGGCATTTG
22994584 AACGAGTAGC
Statistics
Matches: 122, Mismatches: 19, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
39 34 0.28
40 79 0.65
41 9 0.07
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:22994535 original size:79 final size:81
Alignment explanation
Indices: 22994399--22994581 Score: 205
Period size: 79 Copynumber: 2.3 Consensus size: 81
22994389 TCGAATGATG
* *
22994399 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
**
22994463 TGTGTGAGTTACTA-A
66 TGTCCGAGTTACTATA
* * * **
22994478 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
22994540 TTTGTCCGATTTACTATA
64 TTTGTCCGAGTTACTATA
* *
22994558 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
22994582 TGAACGAGTA
Statistics
Matches: 87, Mismatches: 12, Indels: 8
0.81 0.11 0.07
Matches are distributed among these distances:
78 1 0.01
79 56 0.64
80 30 0.34
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTCCGAGTTACTATA
Found at i:22994605 original size:79 final size:78
Alignment explanation
Indices: 22994452--22994615 Score: 181
Period size: 79 Copynumber: 2.1 Consensus size: 78
22994442 GGACTAAGAT
** * **
22994452 CCGAAGGCATTTGTGTGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTCCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
22994517 ATCCGGGTTAAGTC
66 ATCCGGGTTAA-TC
* * *
22994531 CCGAAGGCATTTGTCCGATTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTCCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
* *
22994594 TATATCC-GGTTAATT
63 TAAATCCGGGTTAATC
22994609 CCGAAGG
1 CCGAAGG
22994616 TACGTGATTC
Statistics
Matches: 72, Mismatches: 10, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
78 10 0.14
79 38 0.53
80 24 0.33
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (78 bp):
CCGAAGGCATTTGTCCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAATC
Found at i:23003991 original size:40 final size:40
Alignment explanation
Indices: 23003947--23004214 Score: 441
Period size: 40 Copynumber: 6.7 Consensus size: 40
23003937 GCTACTAGCT
23003947 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
23003987 CAAATGCCTTCGGGACTTAGCCCGGCTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
23004027 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
23004067 CAAATGCCTTCAGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* *
23004107 CAAATGCCTTCGGGACTTAGCCTGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * *
23004147 CAAATGCCTTCGGG-CTTAGCCCGG-AATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
23004186 CAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
23004215 CAATCTGAAT
Statistics
Matches: 213, Mismatches: 12, Indels: 6
0.92 0.05 0.03
Matches are distributed among these distances:
38 1 0.00
39 33 0.15
40 178 0.84
41 1 0.00
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:23004141 original size:120 final size:118
Alignment explanation
Indices: 23003914--23004214 Score: 480
Period size: 120 Copynumber: 2.5 Consensus size: 118
23003904 AAACCAAGTA
* *
23003914 CCTTCGGAGTTTAG-CCGGATATAGCTACTAGCTCAAATGCCTTCGGGACTTAGCCCGGTTATAG
1 CCTTCGG-GCTTAGCCCGGATATAG-TACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTATAG
*
23003978 TAACTCGCACAAATGCCTTCGGGACTTAGCCCGGCTATAGTAACTCGCACAAATG
64 TAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
23004033 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCAGGACTTAGCCCGGTTATAG
1 CCTTCGGG-CTTAGCCCGGATATAGT-ACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTATAG
*
23004098 TAACTCGCACAAATGCCTTCGGGACTTAGCCTGGATATAGTAACTCGCACAAATG
64 TAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
23004153 CCTTCGGGCTTAGCCCGGA-ATTAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CCTTCGGGCTTAGCCCGGATA-TAGT-ACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
23004215 CAATCTGAAT
Statistics
Matches: 169, Mismatches: 9, Indels: 8
0.91 0.05 0.04
Matches are distributed among these distances:
118 2 0.01
119 61 0.36
120 106 0.63
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (118 bp):
CCTTCGGGCTTAGCCCGGATATAGTACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTA
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:23012066 original size:40 final size:40
Alignment explanation
Indices: 23012022--23012289 Score: 459
Period size: 40 Copynumber: 6.7 Consensus size: 40
23012012 GCTACTAGCT
23012022 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
23012062 CAAATGCCTTCGGGACTTAGTCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
23012102 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
23012142 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
23012182 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * *
23012222 CAAATGCCTTCGGG-CTTAGCCCGG-AATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
23012261 CAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
23012290 CAATCCGAAT
Statistics
Matches: 216, Mismatches: 9, Indels: 6
0.94 0.04 0.03
Matches are distributed among these distances:
38 1 0.00
39 34 0.16
40 180 0.83
41 1 0.00
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:23012216 original size:120 final size:118
Alignment explanation
Indices: 23011989--23012289 Score: 489
Period size: 120 Copynumber: 2.5 Consensus size: 118
23011979 AAACCAAGTA
* *
23011989 CCTTCGGAGTTTAG-CCGGATATAGCTACTAGCTCAAATGCCTTCGGGACTTAGCCCGGTTATAG
1 CCTTCGG-GCTTAGCCCGGATATAG-TACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTATAG
* *
23012053 TAACTCGCACAAATGCCTTCGGGACTTAGTCCGGTTATAGTAACTCGCACAAATG
64 TAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
23012108 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAG
1 CCTTCGGG-CTTAGCCCGGATATAGT-ACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTATAG
23012173 TAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
64 TAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
23012228 CCTTCGGGCTTAGCCCGGA-ATTAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CCTTCGGGCTTAGCCCGGATA-TAGT-ACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
23012290 CAATCCGAAT
Statistics
Matches: 171, Mismatches: 7, Indels: 8
0.92 0.04 0.04
Matches are distributed among these distances:
118 2 0.01
119 62 0.36
120 107 0.63
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (118 bp):
CCTTCGGGCTTAGCCCGGATATAGTACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTA
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:23013486 original size:47 final size:49
Alignment explanation
Indices: 23013418--23013528 Score: 174
Period size: 47 Copynumber: 2.3 Consensus size: 49
23013408 CTCAAAGCTC
*
23013418 TTTTCCTTC-TTTTCTTTCTTCTATTCGGCC-AGAACAACATGAGAG-T
1 TTTTCTTTCTTTTTCTTTCTTCTATTCGGCCAAGAACAACATGAGAGTT
23013464 TTTTCTTTCTTTTTCTTTCTTCTATTCGGCCAAGAACAACATGAGAGCTTT
1 TTTTCTTTCTTTTTCTTTCTTCTATTCGGCCAAGAACAACATGAGAG--TT
23013515 TTTTCTTTCTTTTT
1 TTTTCTTTCTTTTT
23013529 TTTATCATCA
Statistics
Matches: 59, Mismatches: 1, Indels: 5
0.91 0.02 0.08
Matches are distributed among these distances:
46 8 0.14
47 21 0.36
48 15 0.25
51 15 0.25
ACGTcount: A:0.17, C:0.22, G:0.11, T:0.50
Consensus pattern (49 bp):
TTTTCTTTCTTTTTCTTTCTTCTATTCGGCCAAGAACAACATGAGAGTT
Found at i:23026305 original size:24 final size:24
Alignment explanation
Indices: 23026277--23026323 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
23026267 TCATAAACTA
* *
23026277 GAAAAATTTCAGAAGAAAATAAAT
1 GAAAAATTACAAAAGAAAATAAAT
*
23026301 GAAAAATTAGAAAAGAAAATAAA
1 GAAAAATTACAAAAGAAAATAAA
23026324 ATTTAAATGT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.68, C:0.02, G:0.13, T:0.17
Consensus pattern (24 bp):
GAAAAATTACAAAAGAAAATAAAT
Found at i:23045451 original size:130 final size:130
Alignment explanation
Indices: 23045294--23045555 Score: 488
Period size: 130 Copynumber: 2.0 Consensus size: 130
23045284 TTATCTCTAA
*
23045294 AAGGGGGATTGCCTTCAATTTTTCTCTGTCCCATTGGCCGAATACTTAATCTTCCCCATCCTCCC
1 AAGGGGGATTGCCTTCAATTTTTCTCTGTCCCATTGGCCAAATACTTAATCTTCCCCATCCTCCC
*
23045359 TCTTCTGTGGATTTTCCTCTCTTGAGCAGTTGGTTCTATCCAGCACGAGTTGCTTTCAGTTGGTT
66 TCTTCTGTGGATTTTCCTCTCTTGAGCAGTTGGTTCTATCCAGCACGAGTTGCTTGCAGTTGGTT
*
23045424 AAGGGGGATTGCCTTCAATTTTTCTCTGTCCCATTGGCCAAATACTTGATCTTCCCCATCCTCCC
1 AAGGGGGATTGCCTTCAATTTTTCTCTGTCCCATTGGCCAAATACTTAATCTTCCCCATCCTCCC
*
23045489 TCTTCTGTGGATTTTCCTCTCTTGAGCAGTTGGTTCTGTCCAGCACGAGTTGCTTGCAGTTGGTT
66 TCTTCTGTGGATTTTCCTCTCTTGAGCAGTTGGTTCTATCCAGCACGAGTTGCTTGCAGTTGGTT
23045554 AA
1 AA
23045556 TTCTTTTGGT
Statistics
Matches: 128, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
130 128 1.00
ACGTcount: A:0.16, C:0.27, G:0.20, T:0.38
Consensus pattern (130 bp):
AAGGGGGATTGCCTTCAATTTTTCTCTGTCCCATTGGCCAAATACTTAATCTTCCCCATCCTCCC
TCTTCTGTGGATTTTCCTCTCTTGAGCAGTTGGTTCTATCCAGCACGAGTTGCTTGCAGTTGGTT
Found at i:23052273 original size:40 final size:40
Alignment explanation
Indices: 23052194--23052331 Score: 174
Period size: 40 Copynumber: 3.5 Consensus size: 40
23052184 AACCCAAGTA
* *
23052194 CCTTCGGGAT-TTAG-CCGGATATAG-CAACTCGCACGAATG
1 CCTTCGGG-TCTTAGCCCGGATATAGTC-ACTAGCACAAATG
23052233 CCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATG
* **
23052273 CCTTCGGGACTTAGCCTAGATATAGTCACTAGCACAAATG
1 CCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATG
* *
23052313 CCTTCGGATCTTAGTCCGG
1 CCTTCGGGTCTTAGCCCGG
23052332 TTTTCATCTG
Statistics
Matches: 86, Mismatches: 10, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
38 1 0.01
39 12 0.14
40 72 0.84
41 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:23060383 original size:40 final size:40
Alignment explanation
Indices: 23060304--23060509 Score: 308
Period size: 40 Copynumber: 5.2 Consensus size: 40
23060294 AACCCAAGTA
* * * *
23060304 CCTTCGAGATTTAG-CCGGATATAG-CAACTCGCACGAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
*
23060343 CCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
23060383 CCTTCGGGACTTAGCCCGGATATAGTCACTAGAACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
* *
23060423 CCTTCGGGACTTAGCCCAGATATAGTCACTATCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
23060463 CCTTCGAGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
23060503 CCTTCGG
1 CCTTCGG
23060510 ATCTTAGTCC
Statistics
Matches: 151, Mismatches: 14, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
39 11 0.07
40 139 0.92
41 1 0.01
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:23069912 original size:18 final size:19
Alignment explanation
Indices: 23069889--23069933 Score: 56
Period size: 20 Copynumber: 2.4 Consensus size: 19
23069879 TGAGTAGGCT
23069889 TGTGGTT-ACACACGCCCG
1 TGTGGTTGACACACGCCCG
**
23069907 TGTGGTTTGGGACACGCCCG
1 TGTGG-TTGACACACGCCCG
23069927 TGTGGTT
1 TGTGGTT
23069934 TGGGACACAC
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
18 5 0.22
19 4 0.17
20 14 0.61
ACGTcount: A:0.11, C:0.24, G:0.36, T:0.29
Consensus pattern (19 bp):
TGTGGTTGACACACGCCCG
Found at i:23069923 original size:20 final size:20
Alignment explanation
Indices: 23069898--23069949 Score: 95
Period size: 20 Copynumber: 2.6 Consensus size: 20
23069888 TTGTGGTTAC
23069898 ACACGCCCGTGTGGTTTGGG
1 ACACGCCCGTGTGGTTTGGG
23069918 ACACGCCCGTGTGGTTTGGG
1 ACACGCCCGTGTGGTTTGGG
*
23069938 ACACACCCGTGT
1 ACACGCCCGTGT
23069950 CGTCTGCCCA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.13, C:0.29, G:0.35, T:0.23
Consensus pattern (20 bp):
ACACGCCCGTGTGGTTTGGG
Found at i:23071958 original size:16 final size:15
Alignment explanation
Indices: 23071934--23071963 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
23071924 AACTGTTTTA
23071934 TTACAAATTTCACTC
1 TTACAAATTTCACTC
23071949 TTACATAATTTCACT
1 TTACA-AATTTCACT
23071964 TACTCCATTC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.33, C:0.23, G:0.00, T:0.43
Consensus pattern (15 bp):
TTACAAATTTCACTC
Found at i:23072288 original size:50 final size:50
Alignment explanation
Indices: 23072163--23072456 Score: 279
Period size: 50 Copynumber: 5.8 Consensus size: 50
23072153 AATCGAAGCT
** * * *
23072163 ATCTGGTATGCATAGTAGCCTGCACTTAGTACTACACATGCGACC-AACA
1 ATCTGGTACACATAGTAGCCTACACTTAGTACTACACATGTGACCTAACC
* *
23072212 ATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACC
1 ATCTGGTACACATAGTAGCCTACACTTAGTACTACACATGTGACCTAACC
* * * * * *
23072262 ATCTGATACACGTAGTAGCCTACACTTAGTAATACACACGTGA-TTGAAACT
1 ATCTGGTACACATAGTAGCCTACACTTAGTACTACACATGTGACCT--AACC
* * * * *
23072313 TTCGGGTACGCATAGTAGCCTGA-AATTAGTACTACACATGCGACCTAACC
1 ATCTGGTACACATAGTAGCCT-ACACTTAGTACTACACATGTGACCTAACC
** * *
23072363 ATCTGGTACATGTAGTAGCCTGCACTTAGTACTACACATGTGACTTAAAACC
1 ATCTGGTACACATAGTAGCCTACACTTAGTACTACACATGTGACCT--AACC
* *** *
23072415 ATTTTAAACACATAGTAGCCTACACATAGTACTACACATGTG
1 ATCTGGTACACATAGTAGCCTACACTTAGTACTACACATGTG
23072457 TTCTCACAAC
Statistics
Matches: 198, Mismatches: 39, Indels: 13
0.79 0.16 0.05
Matches are distributed among these distances:
49 42 0.21
50 81 0.41
51 35 0.18
52 40 0.20
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.26
Consensus pattern (50 bp):
ATCTGGTACACATAGTAGCCTACACTTAGTACTACACATGTGACCTAACC
Found at i:23072349 original size:101 final size:101
Alignment explanation
Indices: 23072216--23072405 Score: 290
Period size: 101 Copynumber: 1.9 Consensus size: 101
23072206 CCAACAATCT
* * *
23072216 GGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACGTAGTAGC
1 GGTACACATAGTAGCCTGAAATTAGTACTACACACGCGACCTAACCATCTGATACACGTAGTAGC
23072281 CTACACTTAGTAATACACACGTGATTGAAACTTTCG
66 CTACACTTAGTAATACACACGTGATTGAAACTTTCG
* * * *
23072317 GGTACGCATAGTAGCCTGAAATTAGTACTACACATGCGACCTAACCATCTGGTACATGTAGTAGC
1 GGTACACATAGTAGCCTGAAATTAGTACTACACACGCGACCTAACCATCTGATACACGTAGTAGC
* * *
23072382 CTGCACTTAGTACTACACATGTGA
66 CTACACTTAGTAATACACACGTGA
23072406 CTTAAAACCA
Statistics
Matches: 79, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
101 79 1.00
ACGTcount: A:0.31, C:0.25, G:0.18, T:0.26
Consensus pattern (101 bp):
GGTACACATAGTAGCCTGAAATTAGTACTACACACGCGACCTAACCATCTGATACACGTAGTAGC
CTACACTTAGTAATACACACGTGATTGAAACTTTCG
Found at i:23072470 original size:151 final size:150
Alignment explanation
Indices: 23072167--23072452 Score: 392
Period size: 151 Copynumber: 1.9 Consensus size: 150
23072157 GAAGCTATCT
* * *
23072167 GGTATGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAACAATCTGGTACACATAGTAGCC
1 GGTACGCATAGTAGCCTGAAATTAGTACTACACATGCGACCAACAATCTGGTACACATAGTAGCC
* * *
23072232 TGCACTTAGTACTACACACGTGACCTAACCATCTGATACACGTAGTAGCCTACACTTAGTAATAC
66 TGCACTTAGTACTACACACGTGACCTAACCATCTGAAACACATAGTAGCCTACACATAGTAATAC
* **
23072297 ACACGTGATTGAAACTTTCG
131 ACACGTGATTCAAACTAACG
* **
23072317 GGTACGCATAGTAGCCTGAAATTAGTACTACACATGCGACCTAACCATCTGGTACATGTAGTAGC
1 GGTACGCATAGTAGCCTGAAATTAGTACTACACATGCGACC-AACAATCTGGTACACATAGTAGC
* * * * *
23072382 CTGCACTTAGTACTACACATGTGACTTAAAACCATTTTAAACACATAGTAGCCTACACATAGTAC
65 CTGCACTTAGTACTACACACGTGACCT--AACCATCTGAAACACATAGTAGCCTACACATAGTAA
23072447 TACACA
128 TACACA
23072453 TGTGTTCTCA
Statistics
Matches: 119, Mismatches: 14, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
150 38 0.32
151 45 0.38
153 36 0.30
ACGTcount: A:0.33, C:0.25, G:0.16, T:0.26
Consensus pattern (150 bp):
GGTACGCATAGTAGCCTGAAATTAGTACTACACATGCGACCAACAATCTGGTACACATAGTAGCC
TGCACTTAGTACTACACACGTGACCTAACCATCTGAAACACATAGTAGCCTACACATAGTAATAC
ACACGTGATTCAAACTAACG
Found at i:23076823 original size:41 final size:41
Alignment explanation
Indices: 23076777--23076996 Score: 327
Period size: 41 Copynumber: 5.3 Consensus size: 41
23076767 TATTCGGGCT
* *
23076777 TTATTGCCTAGCAGGCTTTGTGCCGGTGTATTAAACCAGGC
1 TTATTGCCTAGCAGGCTTTGTGCCGGTGTATTATATCAGGC
* *
23076818 TTATTGCCTAGCAGTCTTTGTGCCGGTGTATTAAATCAGGC
1 TTATTGCCTAGCAGGCTTTGTGCCGGTGTATTATATCAGGC
23076859 TTATTGCCTAGCAGGCTTTGTGCCGGTGTATTATATCAGGC
1 TTATTGCCTAGCAGGCTTTGTGCCGGTGTATTATATCAGGC
*
23076900 TTATTGCCTAGCAGGCTTTATATGCCGGTGTATTATATCAGGC
1 TTATTGCCTAGCAGGC-TT-TGTGCCGGTGTATTATATCAGGC
* *
23076943 TTATTGCCTAGCAAGCTCTGTGCCGGTGTATTATA-CTAGGC
1 TTATTGCCTAGCAGGCTTTGTGCCGGTGTATTATATC-AGGC
23076984 TT-TATGCCTAGCA
1 TTAT-TGCCTAGCA
23076997 AGTTTTATGT
Statistics
Matches: 167, Mismatches: 8, Indels: 8
0.91 0.04 0.04
Matches are distributed among these distances:
40 2 0.01
41 125 0.75
42 3 0.02
43 37 0.22
ACGTcount: A:0.20, C:0.20, G:0.25, T:0.35
Consensus pattern (41 bp):
TTATTGCCTAGCAGGCTTTGTGCCGGTGTATTATATCAGGC
Found at i:23076973 original size:84 final size:81
Alignment explanation
Indices: 23076777--23077005 Score: 325
Period size: 84 Copynumber: 2.8 Consensus size: 81
23076767 TATTCGGGCT
* * *
23076777 TTATTGCCTAGCAGGCTTTGTGCCGGTGTATTAAACCAGGCTTATTGCCTAGCAGTCTTTGTGCC
1 TTATTGCCTAGCAGGCTTTGTGCCGGTGTATTATA-CAGGCTTATTGCCTAGCAGGCTTTATGCC
23076842 GGTGTATTAAATCAGGC
65 GGTGTATTAAATCAGGC
23076859 TTATTGCCTAGCAGGCTTTGTGCCGGTGTATTATATCAGGCTTATTGCCTAGCAGGCTTTATATG
1 TTATTGCCTAGCAGGCTTTGTGCCGGTGTATTATA-CAGGCTTATTGCCTAGCAGGC-TT-TATG
*
23076924 CCGGTGTATTATATCAGGC
63 CCGGTGTATTAAATCAGGC
* * * *
23076943 TTATTGCCTAGCAAGCTCTGTGCCGGTGTATTATACTAGGCTT-TATGCCTAGCAAGTTTTATG
1 TTATTGCCTAGCAGGCTTTGTGCCGGTGTATTATAC-AGGCTTAT-TGCCTAGCAGGCTTTATG
23077006 TGAACAACGG
Statistics
Matches: 134, Mismatches: 9, Indels: 8
0.89 0.06 0.05
Matches are distributed among these distances:
82 58 0.43
83 6 0.04
84 70 0.52
ACGTcount: A:0.20, C:0.20, G:0.24, T:0.36
Consensus pattern (81 bp):
TTATTGCCTAGCAGGCTTTGTGCCGGTGTATTATACAGGCTTATTGCCTAGCAGGCTTTATGCCG
GTGTATTAAATCAGGC
Found at i:23085401 original size:41 final size:41
Alignment explanation
Indices: 23085344--23085427 Score: 159
Period size: 41 Copynumber: 2.0 Consensus size: 41
23085334 ACTCACATAC
23085344 CTGCCCTCACATCATAGCATGCAACATGGCACATTTGATTA
1 CTGCCCTCACATCATAGCATGCAACATGGCACATTTGATTA
*
23085385 CTGCCCTCACATCATAGCATGCAACATGGCACATTTTATTA
1 CTGCCCTCACATCATAGCATGCAACATGGCACATTTGATTA
23085426 CT
1 CT
23085428 CAAGCATTCA
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 42 1.00
ACGTcount: A:0.29, C:0.30, G:0.13, T:0.29
Consensus pattern (41 bp):
CTGCCCTCACATCATAGCATGCAACATGGCACATTTGATTA
Found at i:23091051 original size:30 final size:30
Alignment explanation
Indices: 23091015--23091077 Score: 117
Period size: 30 Copynumber: 2.1 Consensus size: 30
23091005 TTACCACACT
*
23091015 TCTTATCTTTAATTGTTCAACTGTAGATTA
1 TCTTATCTTTAATTGATCAACTGTAGATTA
23091045 TCTTATCTTTAATTGATCAACTGTAGATTA
1 TCTTATCTTTAATTGATCAACTGTAGATTA
23091075 TCT
1 TCT
23091078 CATATATATA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.27, C:0.14, G:0.10, T:0.49
Consensus pattern (30 bp):
TCTTATCTTTAATTGATCAACTGTAGATTA
Found at i:23091454 original size:11 final size:11
Alignment explanation
Indices: 23091438--23091465 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
23091428 GTCACATCTT
23091438 ATCAAATATTA
1 ATCAAATATTA
23091449 ATCAAATATTA
1 ATCAAATATTA
23091460 ATCAAA
1 ATCAAA
23091466 CAAGATGAAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.57, C:0.11, G:0.00, T:0.32
Consensus pattern (11 bp):
ATCAAATATTA
Found at i:23103619 original size:43 final size:43
Alignment explanation
Indices: 23103571--23103659 Score: 178
Period size: 43 Copynumber: 2.1 Consensus size: 43
23103561 TAATTAGTCA
23103571 TTGTACTTTGTGAAAGTTATAAAATTAGTCCTTGTGCTTTAAT
1 TTGTACTTTGTGAAAGTTATAAAATTAGTCCTTGTGCTTTAAT
23103614 TTGTACTTTGTGAAAGTTATAAAATTAGTCCTTGTGCTTTAAT
1 TTGTACTTTGTGAAAGTTATAAAATTAGTCCTTGTGCTTTAAT
23103657 TTG
1 TTG
23103660 ATCAGCTTTA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 46 1.00
ACGTcount: A:0.27, C:0.09, G:0.17, T:0.47
Consensus pattern (43 bp):
TTGTACTTTGTGAAAGTTATAAAATTAGTCCTTGTGCTTTAAT
Found at i:23103648 original size:24 final size:24
Alignment explanation
Indices: 23103578--23103649 Score: 66
Period size: 24 Copynumber: 3.2 Consensus size: 24
23103568 TCATTGTACT
23103578 TTGTGAAAGTTATAAAATTAGTCC
1 TTGTGAAAGTTATAAAATTAGTCC
* * *
23103602 TTGTG---CTT-T--AATTTGTACT
1 TTGTGAAAGTTATAAAATTAGT-CC
23103621 TTGTGAAAGTTATAAAATTAGTCC
1 TTGTGAAAGTTATAAAATTAGTCC
23103645 TTGTG
1 TTGTG
23103650 CTTTAATTTG
Statistics
Matches: 35, Mismatches: 6, Indels: 14
0.64 0.11 0.25
Matches are distributed among these distances:
18 6 0.17
19 6 0.17
20 1 0.03
21 2 0.06
22 2 0.06
23 1 0.03
24 11 0.31
25 6 0.17
ACGTcount: A:0.29, C:0.08, G:0.18, T:0.44
Consensus pattern (24 bp):
TTGTGAAAGTTATAAAATTAGTCC
Found at i:23107302 original size:184 final size:187
Alignment explanation
Indices: 23106953--23107324 Score: 554
Period size: 185 Copynumber: 2.0 Consensus size: 187
23106943 AGGAGATGAA
* * *
23106953 TCCATCAAAAAAATGGAACTTAGGAGATGGTCGACTTGCCAGAAGATAAAAAATGCAATTGGTTT
1 TCCATAAAAAAAATGGAACTTAGGAGATGGTCAACTTACCAGAAGAT-AAAAATGCAATTGGTTT
* * * *
23107018 GAAGTGGGTGTTCAAGACAAAATTTGGTGCAGATAGAAGCATCCAAAAGCACAAAGCTCGTCTTG
65 AAAGTGGGTGTTCAAGACAAAAATTGGTGCAGATAGAAGCATCCAAAAGCACAAAGCTAGACTTG
* *
23107083 TGGCAAAAGGTTATGCACAGCAATATGGTGTTGATTT-GAAGAAACCTTCTCTCCGGT
130 TGACAAAAGGTTATGCACAACAATATGGTGTTGATTTAGAAGAAACCTTCTCTCCGGT
* * **
23107140 TCCATAAAAAAGAATGGAACTTGGGAGATGGTTAACTTACTGGAAGAT-AAAATGCAATTGGTTT
1 TCCATAAAAAA-AATGGAACTTAGGAGATGGTCAACTTACCAGAAGATAAAAATGCAATTGGTTT
* *
23107204 AAAGTGGGTGTTCGAGA-AAAAATTGGTGCAGATGGAAGCATCCAAAAGCAC-AAGCTAGACTTG
65 AAAGTGGGTGTTCAAGACAAAAATTGGTGCAGATAGAAGCATCCAAAAGCACAAAGCTAGACTTG
*
23107267 TGACGAAAGGTTATGCACAACAATATGGTGTTGATTTAGAAGAAACCTTCTCTCCGGT
130 TGACAAAAGGTTATGCACAACAATATGGTGTTGATTTAGAAGAAACCTTCTCTCCGGT
23107325 AGCTCAATTC
Statistics
Matches: 167, Mismatches: 16, Indels: 6
0.88 0.08 0.03
Matches are distributed among these distances:
184 44 0.26
185 52 0.31
186 31 0.19
187 10 0.06
188 30 0.18
ACGTcount: A:0.35, C:0.15, G:0.24, T:0.25
Consensus pattern (187 bp):
TCCATAAAAAAAATGGAACTTAGGAGATGGTCAACTTACCAGAAGATAAAAATGCAATTGGTTTA
AAGTGGGTGTTCAAGACAAAAATTGGTGCAGATAGAAGCATCCAAAAGCACAAAGCTAGACTTGT
GACAAAAGGTTATGCACAACAATATGGTGTTGATTTAGAAGAAACCTTCTCTCCGGT
Found at i:23110199 original size:61 final size:61
Alignment explanation
Indices: 23110134--23110275 Score: 169
Period size: 61 Copynumber: 2.3 Consensus size: 61
23110124 ACCAAAAATT
* **
23110134 AATTTATTAATTTTTTTAGAATT-AGAACTAAATTGACAAATTTTGTAAATTTTGAGGACTA
1 AATTTATTAATTTTTTTAGAATTCA-AACTAAAATGACAAATTTTGTAAACATTGAGGACTA
** * *
23110195 AATTTATTAAACTTTTTAGAATTCAAACTAAAATGACAAGTTTTGTAAACATTGAGGGCTA
1 AATTTATTAATTTTTTTAGAATTCAAACTAAAATGACAAATTTTGTAAACATTGAGGACTA
* *
23110256 AAATTGTTGAATATTTTTTA
1 AATTTATT-AAT-TTTTTTA
23110276 TTTAGAATCA
Statistics
Matches: 67, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
61 58 0.87
62 3 0.04
63 6 0.09
ACGTcount: A:0.39, C:0.06, G:0.12, T:0.42
Consensus pattern (61 bp):
AATTTATTAATTTTTTTAGAATTCAAACTAAAATGACAAATTTTGTAAACATTGAGGACTA
Found at i:23111007 original size:18 final size:17
Alignment explanation
Indices: 23110973--23111032 Score: 54
Period size: 16 Copynumber: 3.5 Consensus size: 17
23110963 TAATATTATA
*
23110973 TTTTGAAAA-ATTCAAT
1 TTTTTAAAATATTCAAT
*
23110989 TCTTTTAAAATATTTAA-
1 T-TTTTAAAATATTCAAT
23111006 TTTTT-AAATAATTCAATT
1 TTTTTAAAAT-ATTCAA-T
23111024 TTTTTAAAA
1 TTTTTAAAA
23111033 AAAATTCAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 9
0.74 0.06 0.19
Matches are distributed among these distances:
15 4 0.11
16 10 0.29
17 8 0.23
18 10 0.29
19 3 0.09
ACGTcount: A:0.42, C:0.05, G:0.02, T:0.52
Consensus pattern (17 bp):
TTTTTAAAATATTCAAT
Found at i:23111029 original size:34 final size:33
Alignment explanation
Indices: 23110964--23111032 Score: 95
Period size: 34 Copynumber: 2.1 Consensus size: 33
23110954 TTAAAATATT
23110964 AATATTATATTTTGAAAAATTCAATTCTTTTAA
1 AATATTATATTTTGAAAAATTCAATTCTTTTAA
* *
23110997 AATATT-TAATTTTTAAATAATTCAATTTTTTTAA
1 AATATTAT-ATTTTGAAA-AATTCAATTCTTTTAA
23111031 AA
1 AA
23111033 AAAATTCAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
32 1 0.03
33 14 0.44
34 17 0.53
ACGTcount: A:0.43, C:0.04, G:0.01, T:0.51
Consensus pattern (33 bp):
AATATTATATTTTGAAAAATTCAATTCTTTTAA
Found at i:23111200 original size:17 final size:17
Alignment explanation
Indices: 23111180--23111213 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
23111170 AAAATAATAT
*
23111180 TAAAAATTAATTAATTA
1 TAAAAATAAATTAATTA
23111197 TAAAAATAAATTAATTA
1 TAAAAATAAATTAATTA
23111214 CGAAGATAAG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (17 bp):
TAAAAATAAATTAATTA
Found at i:23112248 original size:5 final size:5
Alignment explanation
Indices: 23112238--23112270 Score: 57
Period size: 5 Copynumber: 6.4 Consensus size: 5
23112228 TAAGTATATC
23112238 TATTA TATTA TATTA TATTA TATTA TTATTA TA
1 TATTA TATTA TATTA TATTA TATTA -TATTA TA
23112271 ATAATTGAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
5 22 0.81
6 5 0.19
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (5 bp):
TATTA
Found at i:23112726 original size:14 final size:14
Alignment explanation
Indices: 23112703--23112736 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
23112693 TGAAATTTGT
23112703 ATAAAAATAAAGAA
1 ATAAAAATAAAGAA
* *
23112717 TTAAATATAAAGAA
1 ATAAAAATAAAGAA
23112731 ATAAAA
1 ATAAAA
23112737 TTAGTCTCGG
Statistics
Matches: 16, Mismatches: 4, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.74, C:0.00, G:0.06, T:0.21
Consensus pattern (14 bp):
ATAAAAATAAAGAA
Found at i:23113597 original size:12 final size:12
Alignment explanation
Indices: 23113582--23113611 Score: 53
Period size: 11 Copynumber: 2.6 Consensus size: 12
23113572 ATTAATCAAT
23113582 TTTTTAATATTA
1 TTTTTAATATTA
23113594 -TTTTAATATTA
1 TTTTTAATATTA
23113605 TTTTTAA
1 TTTTTAA
23113612 AATTTTATTC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
11 11 0.65
12 6 0.35
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (12 bp):
TTTTTAATATTA
Found at i:23119630 original size:4 final size:4
Alignment explanation
Indices: 23119621--23119654 Score: 61
Period size: 4 Copynumber: 8.8 Consensus size: 4
23119611 ATAAACCAAG
23119621 AAAT AAAT AAAT AAAT AAAT AAAT AAAT -AAT AAA
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAA
23119655 GAGTTTAATT
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
3 3 0.10
4 26 0.90
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (4 bp):
AAAT
Found at i:23122675 original size:23 final size:23
Alignment explanation
Indices: 23122649--23122701 Score: 56
Period size: 21 Copynumber: 2.3 Consensus size: 23
23122639 AAAAAAATTA
*
23122649 AAAATATAATTCTTAATATT-TTT
1 AAAATAT-ATTCTTAAAATTATTT
*
23122672 AAAAT-TATTTTTAAAATTATTT
1 AAAATATATTCTTAAAATTATTT
23122694 AACAATAT
1 AA-AATAT
23122702 GGACAGATGG
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
21 10 0.40
22 6 0.24
23 8 0.32
24 1 0.04
ACGTcount: A:0.47, C:0.04, G:0.00, T:0.49
Consensus pattern (23 bp):
AAAATATATTCTTAAAATTATTT
Found at i:23122680 original size:12 final size:12
Alignment explanation
Indices: 23122665--23122693 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
23122655 TAATTCTTAA
23122665 TATTTTTAAAAT
1 TATTTTTAAAAT
23122677 TATTTTTAAAAT
1 TATTTTTAAAAT
23122689 TATTT
1 TATTT
23122694 AACAATATGG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (12 bp):
TATTTTTAAAAT
Found at i:23122838 original size:10 final size:10
Alignment explanation
Indices: 23122813--23122870 Score: 59
Period size: 10 Copynumber: 6.0 Consensus size: 10
23122803 ATTTAAATAC
*
23122813 TTTTATAAGT
1 TTTTATAATT
*
23122823 TCTTATAATT
1 TTTTATAATT
*
23122833 CTTTAT-ATT
1 TTTTATAATT
23122842 TTTTA-AATAT
1 TTTTATAAT-T
23122852 TTTTAT-ATT
1 TTTTATAATT
23122861 TTTTATAATT
1 TTTTATAATT
23122871 ATTTGAAAAA
Statistics
Matches: 39, Mismatches: 5, Indels: 8
0.75 0.10 0.15
Matches are distributed among these distances:
9 16 0.41
10 23 0.59
ACGTcount: A:0.29, C:0.03, G:0.02, T:0.66
Consensus pattern (10 bp):
TTTTATAATT
Found at i:23122846 original size:9 final size:9
Alignment explanation
Indices: 23122834--23122867 Score: 50
Period size: 9 Copynumber: 3.7 Consensus size: 9
23122824 CTTATAATTC
23122834 TTTATATTT
1 TTTATATTT
*
23122843 TTTAAATATT
1 TTTATAT-TT
23122853 TTTATATTT
1 TTTATATTT
23122862 TTTATA
1 TTTATA
23122868 ATTATTTGAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
9 14 0.64
10 8 0.36
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (9 bp):
TTTATATTT
Found at i:23129048 original size:25 final size:24
Alignment explanation
Indices: 23129020--23129066 Score: 67
Period size: 25 Copynumber: 1.9 Consensus size: 24
23129010 CCTCTATAGC
* *
23129020 TCCTCCTTGTTGTATCACCTATACA
1 TCCTCATTGTTGCATCA-CTATACA
23129045 TCCTCATTGTTGCATCACTATA
1 TCCTCATTGTTGCATCACTATA
23129067 TCAATATTGG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 5 0.25
25 15 0.75
ACGTcount: A:0.21, C:0.30, G:0.09, T:0.40
Consensus pattern (24 bp):
TCCTCATTGTTGCATCACTATACA
Found at i:23133362 original size:44 final size:43
Alignment explanation
Indices: 23133288--23133385 Score: 101
Period size: 44 Copynumber: 2.3 Consensus size: 43
23133278 CGTTCTAGAC
* * *
23133288 ATGGTCTTACATGTAATCAAATATTGATGCC-ACTGTCCCAGAT
1 ATGGTCTTACACGTAATCAAATATCGATGCCAAC-ATCCCAGAT
* *
23133331 ATGGTCTTACACGTAAATCATAA-GTCGATGCCAACATCCTAGAT
1 ATGGTCTTACACGT-AATCA-AATATCGATGCCAACATCCCAGAT
*
23133375 GTGGTCTTACA
1 ATGGTCTTACA
23133386 TGATAACACA
Statistics
Matches: 46, Mismatches: 6, Indels: 5
0.81 0.11 0.09
Matches are distributed among these distances:
43 13 0.28
44 29 0.63
45 4 0.09
ACGTcount: A:0.31, C:0.21, G:0.17, T:0.31
Consensus pattern (43 bp):
ATGGTCTTACACGTAATCAAATATCGATGCCAACATCCCAGAT
Found at i:23136586 original size:49 final size:50
Alignment explanation
Indices: 23136504--23136749 Score: 307
Period size: 49 Copynumber: 4.9 Consensus size: 50
23136494 ATCTATTGTG
* *
23136504 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
** * * * *
23136554 -GGTCGTATATGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-TT
* * * * **
23136604 CGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
*
23136654 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * *
23136704 -GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
23136750 GCTTCGGCTA
Statistics
Matches: 165, Mismatches: 29, Indels: 5
0.83 0.15 0.03
Matches are distributed among these distances:
49 82 0.50
50 47 0.28
51 36 0.22
ACGTcount: A:0.27, C:0.19, G:0.26, T:0.28
Consensus pattern (50 bp):
AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
Found at i:23142988 original size:25 final size:25
Alignment explanation
Indices: 23142960--23143008 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
23142950 CCAGAGGACC
* *
23142960 AATCATATAACTCATGATAATGATT
1 AATCACATAACTCATCATAATGATT
* *
23142985 AATCACATAATTCTTCATAATGAT
1 AATCACATAACTCATCATAATGAT
23143009 AATAATAAAG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.43, C:0.14, G:0.06, T:0.37
Consensus pattern (25 bp):
AATCACATAACTCATCATAATGATT
Found at i:23148008 original size:19 final size:19
Alignment explanation
Indices: 23147984--23148023 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
23147974 TGTGTTATCG
*
23147984 TAAATTCATAGGCATAACT
1 TAAATTCATAGACATAACT
**
23148003 TAAATTTGTAGACATAACT
1 TAAATTCATAGACATAACT
23148022 TA
1 TA
23148024 CACAATTTCA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.42, C:0.12, G:0.10, T:0.35
Consensus pattern (19 bp):
TAAATTCATAGACATAACT
Found at i:23153746 original size:11 final size:14
Alignment explanation
Indices: 23153716--23153746 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
23153706 TTTTCCTATC
23153716 TAATAATAATATTA
1 TAATAATAATATTA
*
23153730 TAATAATAATTTTA
1 TAATAATAATATTA
23153744 TAA
1 TAA
23153747 ATATATCTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (14 bp):
TAATAATAATATTA
Found at i:23162550 original size:19 final size:19
Alignment explanation
Indices: 23162526--23162565 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
23162516 TGTGTTATCG
*
23162526 TAAATTCATAGGCATAACT
1 TAAATTCATAGACATAACT
**
23162545 TAAATTTGTAGACATAACT
1 TAAATTCATAGACATAACT
23162564 TA
1 TA
23162566 CATAATTTCA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.42, C:0.12, G:0.10, T:0.35
Consensus pattern (19 bp):
TAAATTCATAGACATAACT
Found at i:23166069 original size:42 final size:43
Alignment explanation
Indices: 23165954--23166111 Score: 134
Period size: 42 Copynumber: 3.7 Consensus size: 43
23165944 ATATGTGTTA
* * *
23165954 TCGTGTAAGATCACGTCTGGGAC-GTTGGCATCGACT-TATGAGTT
1 TCGTGTAAGACCACGTCTGAGACAG-TGGCATCGA-TATTTGA-TT
* * * *
23165998 ACATGTAAGACCACGTCTGGGACATTGGCATC-ATATTTGATT
1 TCGTGTAAGACCACGTCTGAGACAGTGGCATCGATATTTGATT
*
23166040 TCGTGTAAGACC-CTGTCTGAGATAGTGGCATCGATATTTGA--
1 TCGTGTAAGACCAC-GTCTGAGACAGTGGCATCGATATTTGATT
23166081 T-GATGTAAGACCACGTCTGAGAC-GTCGGCAT
1 TCG-TGTAAGACCACGTCTGAGACAGT-GGCAT
23166112 TGTACGAGCT
Statistics
Matches: 96, Mismatches: 11, Indels: 17
0.77 0.09 0.14
Matches are distributed among these distances:
40 3 0.03
41 24 0.25
42 29 0.30
43 13 0.14
44 27 0.28
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.30
Consensus pattern (43 bp):
TCGTGTAAGACCACGTCTGAGACAGTGGCATCGATATTTGATT
Found at i:23169475 original size:25 final size:25
Alignment explanation
Indices: 23169447--23169495 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
23169437 CCAGTGGACC
* *
23169447 AATCATATAACTCATGATAATGATT
1 AATCACATAACTCATCATAATGATT
* *
23169472 AATCACATAATTCTTCATAATGAT
1 AATCACATAACTCATCATAATGAT
23169496 AATAATAAAG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.43, C:0.14, G:0.06, T:0.37
Consensus pattern (25 bp):
AATCACATAACTCATCATAATGATT
Found at i:23170074 original size:27 final size:27
Alignment explanation
Indices: 23170044--23170100 Score: 105
Period size: 27 Copynumber: 2.1 Consensus size: 27
23170034 ACTTTTACTA
*
23170044 CATATTTTATAACTTTTACAGTTTAGT
1 CATATTTTATAACTTTTACAATTTAGT
23170071 CATATTTTATAACTTTTACAATTTAGT
1 CATATTTTATAACTTTTACAATTTAGT
23170098 CAT
1 CAT
23170101 TTTAAGCAAT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.32, C:0.12, G:0.05, T:0.51
Consensus pattern (27 bp):
CATATTTTATAACTTTTACAATTTAGT
Found at i:23176670 original size:48 final size:49
Alignment explanation
Indices: 23176607--23176878 Score: 252
Period size: 46 Copynumber: 5.7 Consensus size: 49
23176597 CAGCCACATT
*
23176607 ATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATTGGCAT-TGAG
1 ATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATATGAG
* * *
23176655 ACGAGAGCTAGTGTAATA-CATGTCTGGGACAT-GCATCGGCCT-TGAG
1 ATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATATGAG
* * *
23176701 ATGTA-AGCCAGTGTAAGA-CATGTCTGGGATAT-GCATCGGC-TACGAG
1 ATG-AGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATATGAG
* * *
23176747 ATGTG-TC-AGTGTAAGACCATGTTTGGGACATGGCATCGGCACGTAT-A-
1 ATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCA--TATGAG
* * *
23176794 AAG-GTG-TCAGTGTAAGACCATGTCTGGGACATGGCATCAGCACGTAT-ATG
1 ATGAGAGCT-AGTGTAAGACCATGTCTGGGACATGGCATCGGCA--TATGA-G
23176844 -TGAGAGCTAGTGTAAGACCATGTCTGGGACATGGC
1 ATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGC
23176879 GTGGGCTTCG
Statistics
Matches: 189, Mismatches: 20, Indels: 28
0.80 0.08 0.12
Matches are distributed among these distances:
44 9 0.05
45 14 0.07
46 61 0.32
47 17 0.09
48 55 0.29
49 3 0.02
50 29 0.15
51 1 0.01
ACGTcount: A:0.27, C:0.17, G:0.31, T:0.25
Consensus pattern (49 bp):
ATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATATGAG
Found at i:23176722 original size:46 final size:48
Alignment explanation
Indices: 23176616--23176931 Score: 228
Period size: 46 Copynumber: 6.6 Consensus size: 48
23176606 TATGAGAGCT
* * * *
23176616 AGTGTAAGACCATGTCTGGGACATGGCATTGGCATTGAGACG-AGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTTGAGATGTA-AGCC
*
23176664 AGTGTAATA-CATGTCTGGGACAT-GCATCGGCCTTGAGATGTAAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTTGAGATGTAAGCC
* * *
23176710 AGTGTAAGA-CATGTCTGGGATAT-GCATCGG-CTACGAGATGT--GTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCT-TGAGATGTAAGCC
* * * *
23176754 AGTGTAAGACCATGTTTGGGACATGGCATCGGCACGTAT-AAAGGT--GTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGC-C-T-TGAGATGTAAGCC
* * * *
23176802 AGTGTAAGACCATGTCTGGGACATGGCATCAGCACGT-ATATGTGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGC-CTTGAGATGT-A-AGCC
* * * * *
23176852 AGTGTAAGACCATGTCTGGGACATGGCGT-GGGCTT-CGATTTCGATAGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTTGAGATGT--A-AGCC
* *
23176901 AGTGTAAGACAATGTCTGGGGCATGGCATCG
1 AGTGTAAGACCATGTCTGGGACATGGCATCG
23176932 ATATTATACC
Statistics
Matches: 221, Mismatches: 34, Indels: 24
0.79 0.12 0.09
Matches are distributed among these distances:
44 11 0.05
45 14 0.06
46 64 0.29
47 15 0.07
48 54 0.24
49 33 0.15
50 30 0.14
ACGTcount: A:0.26, C:0.17, G:0.32, T:0.25
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTTGAGATGTAAGCC
Found at i:23178019 original size:21 final size:20
Alignment explanation
Indices: 23177995--23178034 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
23177985 TCATAGTGAA
23177995 CCACACGAGCGTGTTGCCCTT
1 CCACACGAGCGTG-TGCCCTT
* *
23178016 CCACATGGGCGTGTGCCCT
1 CCACACGAGCGTGTGCCCT
23178035 GTTTCAAGGG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.12, C:0.38, G:0.28, T:0.23
Consensus pattern (20 bp):
CCACACGAGCGTGTGCCCTT
Found at i:23183318 original size:31 final size:31
Alignment explanation
Indices: 23183280--23183338 Score: 109
Period size: 31 Copynumber: 1.9 Consensus size: 31
23183270 ATTTCTAATC
*
23183280 AAAATTACATAGTTAATTACACAGTAAATAT
1 AAAATTACATAGTAAATTACACAGTAAATAT
23183311 AAAATTACATAGTAAATTACACAGTAAA
1 AAAATTACATAGTAAATTACACAGTAAA
23183339 ATATGTTATA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.54, C:0.10, G:0.07, T:0.29
Consensus pattern (31 bp):
AAAATTACATAGTAAATTACACAGTAAATAT
Found at i:23183329 original size:12 final size:12
Alignment explanation
Indices: 23183281--23183338 Score: 54
Period size: 12 Copynumber: 5.2 Consensus size: 12
23183271 TTTCTAATCA
23183281 AAATTACATAGT
1 AAATTACATAGT
* *
23183293 TAATTACACAGT
1 AAATTACATAGT
23183305 AAA-T--ATA--
1 AAATTACATAGT
23183312 AAATTACATAGT
1 AAATTACATAGT
*
23183324 AAATTACACAGT
1 AAATTACATAGT
23183336 AAA
1 AAA
23183339 ATATGTTATA
Statistics
Matches: 36, Mismatches: 5, Indels: 10
0.71 0.10 0.20
Matches are distributed among these distances:
7 3 0.08
8 1 0.03
9 2 0.06
10 3 0.08
11 1 0.03
12 26 0.72
ACGTcount: A:0.53, C:0.10, G:0.07, T:0.29
Consensus pattern (12 bp):
AAATTACATAGT
Found at i:23191251 original size:29 final size:27
Alignment explanation
Indices: 23191233--23191302 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
23191223 ATATTAAGTC
23191233 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTATATAATCAACT
*
23191260 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTCAGTGCTATATAATC-AACT
*
23191288 CGCACACTTAGTGCT
1 CGCACACTCAGTGCT
23191303 GTACAATTTA
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (27 bp):
CGCACACTCAGTGCTATATAATCAACT
Found at i:23191296 original size:28 final size:28
Alignment explanation
Indices: 23191233--23191330 Score: 135
Period size: 28 Copynumber: 3.5 Consensus size: 28
23191223 ATATTAAGTC
*
23191233 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
23191260 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
23191288 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
23191317 CGCACACTTAGTGC
1 CGCACACTTAGTGC
23191331 CAATCTCATG
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 22 0.34
28 23 0.36
29 19 0.30
ACGTcount: A:0.32, C:0.29, G:0.13, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:23193977 original size:17 final size:18
Alignment explanation
Indices: 23193955--23193988 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
23193945 CTAGAATAGT
23193955 AAGCAT-AAAATAGTTTC
1 AAGCATGAAAATAGTTTC
23193972 AAGCATGAAAATAGTTT
1 AAGCATGAAAATAGTTT
23193989 GGCACATCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.47, C:0.09, G:0.15, T:0.29
Consensus pattern (18 bp):
AAGCATGAAAATAGTTTC
Found at i:23204321 original size:46 final size:49
Alignment explanation
Indices: 23204254--23204383 Score: 157
Period size: 46 Copynumber: 2.8 Consensus size: 49
23204244 TGTAACCCGC
23204254 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG-G-C-A-TTCACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGAGCCTAGTT-ACAT
* *
23204300 CCATAAGTGAACTCGGACTCAACTCAATGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA-GCCTAGTTACAT
* *
23204350 -C-TCA-CGAACTCGGACTCAACTCAACGAGCTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
23204384 TCTCAAATAT
Statistics
Matches: 73, Mismatches: 6, Indels: 9
0.83 0.07 0.10
Matches are distributed among these distances:
46 34 0.47
47 27 0.37
48 3 0.04
49 2 0.03
50 5 0.07
51 2 0.03
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.21
Consensus pattern (49 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGAGCCTAGTTACAT
Found at i:23223062 original size:23 final size:23
Alignment explanation
Indices: 23223025--23223071 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
23223015 ATTCTCCTTT
* *
23223025 ATTGGTATGTGAGTTTTAAGCTA
1 ATTGGTACGTAAGTTTTAAGCTA
*
23223048 ATTGGTACGTAAGTTTTATGCTA
1 ATTGGTACGTAAGTTTTAAGCTA
23223071 A
1 A
23223072 CCTTTATGAC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.28, C:0.06, G:0.23, T:0.43
Consensus pattern (23 bp):
ATTGGTACGTAAGTTTTAAGCTA
Found at i:23224184 original size:15 final size:15
Alignment explanation
Indices: 23224166--23224204 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 15
23224156 CGAGAAGGCC
23224166 GAGAAAGAAAATACT
1 GAGAAAGAAAATACT
** *
23224181 GAGAAAGAAGCTGCT
1 GAGAAAGAAAATACT
23224196 GAGAAAGAA
1 GAGAAAGAA
23224205 TCTGCTGAGA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.54, C:0.08, G:0.28, T:0.10
Consensus pattern (15 bp):
GAGAAAGAAAATACT
Found at i:23224209 original size:15 final size:15
Alignment explanation
Indices: 23224179--23224215 Score: 65
Period size: 15 Copynumber: 2.5 Consensus size: 15
23224169 AAAGAAAATA
23224179 CTGAGAAAGAAGCTG
1 CTGAGAAAGAAGCTG
*
23224194 CTGAGAAAGAATCTG
1 CTGAGAAAGAAGCTG
23224209 CTGAGAA
1 CTGAGAA
23224216 CATTATTAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.41, C:0.14, G:0.30, T:0.16
Consensus pattern (15 bp):
CTGAGAAAGAAGCTG
Found at i:23225284 original size:210 final size:210
Alignment explanation
Indices: 23224665--23225300 Score: 1164
Period size: 212 Copynumber: 3.0 Consensus size: 210
23224655 CATTTTAATG
* *
23224665 TTAGTGGATTGGGGACAGTACAAACTTTAAGTTTGGGGGAATGCATATGGAGTTTGGAAGTACAC
1 TTAGTGGATTGGGGACAGTACAAACTTTAAGTTTGGGGGAATGCATATGGGGTTTGGAAATACAC
23224730 CCATATTTTTAAAAAAAAGTTTAATAAAGCATGAAAGGTTTATTTATGGTTAATGCAAATGTGTT
66 CCATA--TTTAAAAAAAAGTTTAATAAAGCATGAAAGGTTTATTTATGGTTAATGCAAATGTGTT
*
23224795 TGAAAATTTTTGTTACATTCGATGCTTAATTCTCGAATAATGCTAATTATTGATGAATGAATTGG
129 TGAAAATTTTTGTTACATTCGATGCTTAATTCTTGAATAATGCTAATTATTGATGAATGAATTGG
23224860 ATAAATTTGACTAAATA
194 ATAAATTTGACTAAATA
*
23224877 TTAGTGGATTGGGGACAGCACAAACTTTAAGTTTGGGGGAATGCATATGGGGTTTGGAAATACAC
1 TTAGTGGATTGGGGACAGTACAAACTTTAAGTTTGGGGGAATGCATATGGGGTTTGGAAATACAC
* *
23224942 CCATGTTTTAAAAAATAAGTTTAATAAAGCATGAAAGGTTTATTTATGGTTAATGTAAATGTGTT
66 CCAT-ATTTAAAAAA-AAGTTTAATAAAGCATGAAAGGTTTATTTATGGTTAATGCAAATGTGTT
*
23225007 TGAAAATTTTTGTTACATTCGATGCTTAATTCTTGAATAATGCTAATTATTGATGAATGACTTGG
129 TGAAAATTTTTGTTACATTCGATGCTTAATTCTTGAATAATGCTAATTATTGATGAATGAATTGG
23225072 ATAAATTTGACTAAATA
194 ATAAATTTGACTAAATA
23225089 TTAGTGGATTGGGGACAGTACAAACTTTAAGTTTGGGGGAATGCATATGGGGTTTGGAAATACAC
1 TTAGTGGATTGGGGACAGTACAAACTTTAAGTTTGGGGGAATGCATATGGGGTTTGGAAATACAC
23225154 CCATATTTAAAAAAAAGTTTAATAAAGCATGAAAGGTTTATTTATGGTTAATGCAAATGTGTTTG
66 CCATATTTAAAAAAAAGTTTAATAAAGCATGAAAGGTTTATTTATGGTTAATGCAAATGTGTTTG
*
23225219 AAAATTTTTGTTACATTCGATGCTTAATTCTTGAATAATGCTAATTATTAATGAATGAATTGGAT
131 AAAATTTTTGTTACATTCGATGCTTAATTCTTGAATAATGCTAATTATTGATGAATGAATTGGAT
23225284 AAATTTGACTAAATA
196 AAATTTGACTAAATA
23225299 TT
1 TT
23225301 GTATCTTCAA
Statistics
Matches: 410, Mismatches: 12, Indels: 6
0.96 0.03 0.01
Matches are distributed among these distances:
210 130 0.32
211 18 0.04
212 262 0.64
ACGTcount: A:0.35, C:0.08, G:0.20, T:0.37
Consensus pattern (210 bp):
TTAGTGGATTGGGGACAGTACAAACTTTAAGTTTGGGGGAATGCATATGGGGTTTGGAAATACAC
CCATATTTAAAAAAAAGTTTAATAAAGCATGAAAGGTTTATTTATGGTTAATGCAAATGTGTTTG
AAAATTTTTGTTACATTCGATGCTTAATTCTTGAATAATGCTAATTATTGATGAATGAATTGGAT
AAATTTGACTAAATA
Found at i:23229405 original size:28 final size:28
Alignment explanation
Indices: 23229373--23229442 Score: 99
Period size: 28 Copynumber: 2.5 Consensus size: 28
23229363 AATGAGATTG
23229373 GCACTAAGTGTGCGAGTTT-AAT-TGTATA
1 GCACTAAGTGTGCGAGTTTGAATAT-TA-A
*
23229401 GCACTAAGTGTGCGAGTTTGACTATTAA
1 GCACTAAGTGTGCGAGTTTGAATATTAA
23229429 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
23229443 GACTTACTAT
Statistics
Matches: 39, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
28 34 0.87
29 4 0.10
30 1 0.03
ACGTcount: A:0.27, C:0.14, G:0.27, T:0.31
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGAATATTAA
Found at i:23232947 original size:22 final size:22
Alignment explanation
Indices: 23232922--23232965 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
23232912 AATTATTAAC
*
23232922 ATAATGAATTTCAATTAATTTT
1 ATAATAAATTTCAATTAATTTT
**
23232944 ATAATAAATTTTGATTAATTTT
1 ATAATAAATTTCAATTAATTTT
23232966 GATTATTTTC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.41, C:0.02, G:0.05, T:0.52
Consensus pattern (22 bp):
ATAATAAATTTCAATTAATTTT
Found at i:23239056 original size:29 final size:29
Alignment explanation
Indices: 23238985--23239109 Score: 171
Period size: 29 Copynumber: 4.3 Consensus size: 29
23238975 AAGTCTACAA
* * *
23238985 ACATGCATATGGCCCACTAGGCCC-AATT
1 ACATTCATATGGCCCATTAGGCCCAAATC
* *
23239013 TCATTCTTATGGCCCATTAGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
* *
23239042 ATATTCGTATGGCCCATTAGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
*
23239071 ACATTCATATGGCCCATTTGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
23239100 ACATTCATAT
1 ACATTCATAT
23239110 ACATGCTTTC
Statistics
Matches: 85, Mismatches: 11, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
28 20 0.24
29 65 0.76
ACGTcount: A:0.28, C:0.30, G:0.14, T:0.28
Consensus pattern (29 bp):
ACATTCATATGGCCCATTAGGCCCAAATC
Found at i:23239333 original size:8 final size:8
Alignment explanation
Indices: 23239320--23239350 Score: 53
Period size: 8 Copynumber: 3.9 Consensus size: 8
23239310 GTAGCCAAAC
*
23239320 TTTCGGCT
1 TTTCGGCA
23239328 TTTCGGCA
1 TTTCGGCA
23239336 TTTCGGCA
1 TTTCGGCA
23239344 TTTCGGC
1 TTTCGGC
23239351 TTTTGCCGAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.06, C:0.26, G:0.26, T:0.42
Consensus pattern (8 bp):
TTTCGGCA
Found at i:23246351 original size:28 final size:29
Alignment explanation
Indices: 23246319--23246405 Score: 97
Period size: 28 Copynumber: 3.1 Consensus size: 29
23246309 ATACATGCAA
*
23246319 ATGGCCCACTAGGCCC-AATCTCATTCAT
1 ATGGCCCACTAGGCCCAAATCACATTCAT
* *
23246347 ATGGCTCATTAGGCCCAAATCACATTCAT
1 ATGGCCCACTAGGCCCAAATCACATTCAT
* * * *
23246376 ACGACCCATTA-GCCCAAATCATATTCAT
1 ATGGCCCACTAGGCCCAAATCACATTCAT
23246404 AT
1 AT
23246406 ACATGCTTTC
Statistics
Matches: 50, Mismatches: 8, Indels: 2
0.83 0.13 0.03
Matches are distributed among these distances:
28 31 0.62
29 19 0.38
ACGTcount: A:0.31, C:0.31, G:0.11, T:0.26
Consensus pattern (29 bp):
ATGGCCCACTAGGCCCAAATCACATTCAT
Found at i:23246485 original size:17 final size:18
Alignment explanation
Indices: 23246463--23246497 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
23246453 TGCCTATTAT
23246463 GGGCCCA-ATAGCCCATC
1 GGGCCCACATAGCCCATC
*
23246480 GGGCCCACTTAGCCCATC
1 GGGCCCACATAGCCCATC
23246498 TTGGCCCGGT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.20, C:0.43, G:0.23, T:0.14
Consensus pattern (18 bp):
GGGCCCACATAGCCCATC
Found at i:23246716 original size:25 final size:25
Alignment explanation
Indices: 23246679--23246727 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
23246669 TAAAGAAAAG
23246679 TAGAAATCATTTAAAACCAGAGGTT
1 TAGAAATCATTTAAAACCAGAGGTT
** *
23246704 TAGAAATTGTTTAAAACTAGAGGT
1 TAGAAATCATTTAAAACCAGAGGT
23246728 GAATCAAAAT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.43, C:0.08, G:0.18, T:0.31
Consensus pattern (25 bp):
TAGAAATCATTTAAAACCAGAGGTT
Found at i:23254624 original size:25 final size:26
Alignment explanation
Indices: 23254596--23254655 Score: 63
Period size: 25 Copynumber: 2.4 Consensus size: 26
23254586 TAATTAATAT
*
23254596 AAAATATTAATAATTCAAT-AAATTG
1 AAAATATTAATAATTAAATAAAATTG
* *
23254621 AAAA-ATTAAATGATTAAATAAAATTT
1 AAAATATT-AATAATTAAATAAAATTG
23254647 AAAAT-TTAA
1 AAAATATTAA
23254656 GAGAAAATAT
Statistics
Matches: 29, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
24 3 0.10
25 15 0.52
26 11 0.38
ACGTcount: A:0.60, C:0.02, G:0.03, T:0.35
Consensus pattern (26 bp):
AAAATATTAATAATTAAATAAAATTG
Found at i:23257163 original size:93 final size:93
Alignment explanation
Indices: 23257036--23257207 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
23257026 CGCCCATAAG
* *
23257036 CGAACTCAGACTCAACTCAATGAGCTCGGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
23257101 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
* *
23257129 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
23257194 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
23257208 TCAACCATAC
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
CGAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:23257204 original size:46 final size:46
Alignment explanation
Indices: 23257029--23257204 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
23257019 TGTAACCCGC
* * * *
23257029 CCATAAGCGAACTCAGACTCAACTCAATGAGCTCGGGCATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
23257075 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
23257125 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
23257168 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
23257205 TGCTCAACCA
Statistics
Matches: 110, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 61 0.55
47 29 0.26
48 2 0.02
49 2 0.02
50 4 0.04
51 2 0.02
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:23264729 original size:93 final size:93
Alignment explanation
Indices: 23264600--23264771 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
23264590 CGCCCATAAG
* * *
23264600 CGAACTCAGACTCAACTCAATGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
23264665 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
* *
23264693 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
23264758 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
23264772 TCAACCATAC
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
CGAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:23264768 original size:46 final size:46
Alignment explanation
Indices: 23264593--23264768 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
23264583 TGTAACCCGC
* * * * *
23264593 CCATAAGCGAACTCAGACTCAACTCAATGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
23264639 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
23264689 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
23264732 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
23264769 TGCTCAACCA
Statistics
Matches: 109, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 61 0.56
47 29 0.27
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:23264787 original size:46 final size:45
Alignment explanation
Indices: 23264644--23264787 Score: 145
Period size: 46 Copynumber: 3.1 Consensus size: 45
23264634 CGCATCCATA
23264644 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTA-CAT-CT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A---ACCATACT
* * *
23264691 CA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATA--
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGC-CAACCATACT
23264737 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATACT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CAACCATACT
23264783 AGTGA
1 AGTGA
23264788 CATGTCACTT
Statistics
Matches: 81, Mismatches: 7, Indels: 18
0.76 0.07 0.17
Matches are distributed among these distances:
44 10 0.12
45 1 0.01
46 33 0.41
47 31 0.38
48 1 0.01
49 4 0.05
50 1 0.01
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (45 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCAACCATACT
Found at i:23268800 original size:47 final size:48
Alignment explanation
Indices: 23268621--23268840 Score: 161
Period size: 47 Copynumber: 4.7 Consensus size: 48
23268611 TGCGTGAGCT
* * * * * *
23268621 AGTGTAAGACGATGTCCGGGACATGGCATCGGC-ACTAAGACGAGTG-C
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCTAC-GAGATGTGAGAC
** * * * * *
23268668 TAGTGTAAGA-CATGTCTTAGACAT-GCATCAGCCT-CAAGACGTAAGCC
1 -AGTGTAAGACCATGTCTGGGACATGGCATC-GGCTACGAGATGTGAGAC
* *
23268715 AGTGTAAGA-CATGTCTGGGACAT-GCATCGACTACGAGATGAT-AGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCTACGAGATG-TGAGAC
* * *
23268761 AGTGTAAGACCATGTCTAGGATATGGCATCGGCT-TGAGATGTGAGAC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCTACGAGATGTGAGAC
* *
23268808 AGGGTAAGACCGTGTCTGGGACATGGCATCGGC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGC
23268841 ACTTTACCCA
Statistics
Matches: 141, Mismatches: 23, Indels: 17
0.78 0.13 0.09
Matches are distributed among these distances:
45 3 0.02
46 56 0.40
47 65 0.46
48 17 0.12
ACGTcount: A:0.28, C:0.20, G:0.30, T:0.22
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCTACGAGATGTGAGAC
Found at i:23285725 original size:12 final size:12
Alignment explanation
Indices: 23285708--23285735 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
23285698 ATAAGGTAAG
23285708 CTCTGGCTGGTA
1 CTCTGGCTGGTA
23285720 CTCTGGCTGGTA
1 CTCTGGCTGGTA
23285732 CTCT
1 CTCT
23285736 AGCCTCGAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.07, C:0.29, G:0.29, T:0.36
Consensus pattern (12 bp):
CTCTGGCTGGTA
Found at i:23287640 original size:49 final size:49
Alignment explanation
Indices: 23287568--23287666 Score: 198
Period size: 49 Copynumber: 2.0 Consensus size: 49
23287558 CCTCGAGTAC
23287568 TAGTATTTACTTCCTTTTTATTATCTAGCCTAAAAATTAAGAGGTTTGG
1 TAGTATTTACTTCCTTTTTATTATCTAGCCTAAAAATTAAGAGGTTTGG
23287617 TAGTATTTACTTCCTTTTTATTATCTAGCCTAAAAATTAAGAGGTTTGG
1 TAGTATTTACTTCCTTTTTATTATCTAGCCTAAAAATTAAGAGGTTTGG
23287666 T
1 T
23287667 TATCTAAACT
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
49 50 1.00
ACGTcount: A:0.28, C:0.12, G:0.14, T:0.45
Consensus pattern (49 bp):
TAGTATTTACTTCCTTTTTATTATCTAGCCTAAAAATTAAGAGGTTTGG
Found at i:23298404 original size:46 final size:45
Alignment explanation
Indices: 23298300--23298415 Score: 130
Period size: 46 Copynumber: 2.6 Consensus size: 45
23298290 TGCTGATTCC
* * *
23298300 ATGTCCCAGACATGGTCTTATACTGAC--ATGTCTCGTAGCCAATG
1 ATGTCCCAGACAT-GTCTTACACTGGCTTACGTCTCGTAGCCAATG
23298344 ATGTCCCAGACATGTCTTACACTGGCTTACGTCTCG-AGGCCAATG
1 ATGTCCCAGACATGTCTTACACTGGCTTACGTCTCGTA-GCCAATG
** *
23298389 CATGTCCTGGACATGTCTTACAGTGGC
1 -ATGTCCCAGACATGTCTTACACTGGC
23298416 ACTCATCTCA
Statistics
Matches: 62, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
43 11 0.18
44 14 0.23
45 14 0.23
46 23 0.37
ACGTcount: A:0.22, C:0.27, G:0.22, T:0.28
Consensus pattern (45 bp):
ATGTCCCAGACATGTCTTACACTGGCTTACGTCTCGTAGCCAATG
Found at i:23298448 original size:46 final size:46
Alignment explanation
Indices: 23298337--23298459 Score: 117
Period size: 46 Copynumber: 2.7 Consensus size: 46
23298327 ATGTCTCGTA
* * * *
23298337 GCCAATG-ATGTCCCAGACATGTCTTACACTGGCTTACGTCTCGAG
1 GCCAATGCAAGTCCCAGACATGTCTTACACTGGCCTACATCTCAAG
* ** * *
23298382 GCCAATGCATGTCCTGGACATGTCTTACAGTGGCACT-CATCTCAAT
1 GCCAATGCAAGTCCCAGACATGTCTTACACTGGC-CTACATCTCAAG
23298428 GCC-ATGCCAAGTCCCAGACATGGTCTTACACT
1 GCCAATG-CAAGTCCCAGACAT-GTCTTACACT
23298460 AGTACAAAAA
Statistics
Matches: 63, Mismatches: 11, Indels: 6
0.79 0.14 0.08
Matches are distributed among these distances:
45 10 0.16
46 43 0.68
47 10 0.16
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.26
Consensus pattern (46 bp):
GCCAATGCAAGTCCCAGACATGTCTTACACTGGCCTACATCTCAAG
Found at i:23303822 original size:40 final size:40
Alignment explanation
Indices: 23303777--23304008 Score: 297
Period size: 40 Copynumber: 5.8 Consensus size: 40
23303767 ATAACCACAA
* * *
23303777 GCACAATTGCCTTCGGGTCTTAACCCAGG-TATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCC-GGATATATCAACTC
*
23303817 GCACAAATGCCTTCAGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
*
23303857 GCACAAATGCCTTTGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
23303897 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATATCAACTC
* * * * * *
23303937 GCATAAATGCCTTCGGGACTTAGCCCGGATAAAACCACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
23303977 GCATAAATGCCTTCGGGACTTAGCCCGGATAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAT
23304009 CATTCAAATG
Statistics
Matches: 176, Mismatches: 13, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
39 6 0.03
40 166 0.94
41 4 0.02
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.24
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
Found at i:23309092 original size:37 final size:37
Alignment explanation
Indices: 23309032--23309178 Score: 231
Period size: 37 Copynumber: 4.0 Consensus size: 37
23309022 TTTAGCTCGA
* *
23309032 ATAATCCCCACACGTAGTTATCGGGTCTTACCCAGAC
1 ATAATCTCCACACGTAGTCATCGGGTCTTACCCAGAC
* *
23309069 AAAATCTCCACACGTAGTCATCGGGTCTTACCCGGAC
1 ATAATCTCCACACGTAGTCATCGGGTCTTACCCAGAC
* * *
23309106 ATAATCTTCACACGTATTCATCGGGTCTTACCCGGAC
1 ATAATCTCCACACGTAGTCATCGGGTCTTACCCAGAC
23309143 ATAATCTCCACACGTAGTCATCGGGTCTTACCCAGA
1 ATAATCTCCACACGTAGTCATCGGGTCTTACCCAGA
23309179 ATATATTTCC
Statistics
Matches: 100, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 100 1.00
ACGTcount: A:0.27, C:0.31, G:0.17, T:0.25
Consensus pattern (37 bp):
ATAATCTCCACACGTAGTCATCGGGTCTTACCCAGAC
Found at i:23309377 original size:48 final size:48
Alignment explanation
Indices: 23309319--23309558 Score: 358
Period size: 48 Copynumber: 5.0 Consensus size: 48
23309309 ATATACACAC
* * *
23309319 ATCTCCTACATATTTCACATTAGCCATTCGGCTTTAACAAATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
23309367 ATCTCATACATATTTCACATTAGCCATTCGGATTTACCACATAT--AT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
** *
23309413 ATCTCATACATATTTCATGTTAGCCATTCGGCTATACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
23309461 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* * * *
23309509 ATCTCATGCATATTTCATATTAGCCATTCGGCTTTACCACACATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
23309557 AT
1 AT
23309559 ATTTATCTTG
Statistics
Matches: 175, Mismatches: 15, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
46 42 0.24
48 133 0.76
ACGTcount: A:0.32, C:0.25, G:0.07, T:0.37
Consensus pattern (48 bp):
ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
Found at i:23309395 original size:94 final size:93
Alignment explanation
Indices: 23309319--23309544 Score: 328
Period size: 94 Copynumber: 2.4 Consensus size: 93
23309309 ATATACACAC
* *
23309319 ATCTCCTACATATTTCACATTAGCCATTCGGCTTTAACAAATATACATATCTCATACATATTTCA
1 ATCTCATACATATTTCATATTAGCCATTCGGCTTTAACAAATATACATATCTCATACATATTTCA
*
23309384 CATTAGCCATTCGGATTTACCACAT-ATAT
66 CATTAGCCATTCGG--CTACCACATAATAT
* * * *
23309413 ATCTCATACATATTTCATGTTAGCCATTCGGCTATACCACATATACATATCTCATACATATTTCA
1 ATCTCATACATATTTCATATTAGCCATTCGGCTTTAACAAATATACATATCTCATACATATTTCA
23309478 CATTAGCCATTCGGCTTTACCACATATATAT
66 CATTAGCCATTCGGC--TACCACATA-ATAT
*
23309509 ATCTCATGCATATTTCATATTAGCCATTCGGCTTTA
1 ATCTCATACATATTTCATATTAGCCATTCGGCTTTA
23309545 CCACACATAT
Statistics
Matches: 118, Mismatches: 10, Indels: 6
0.88 0.07 0.04
Matches are distributed among these distances:
94 81 0.69
96 37 0.31
ACGTcount: A:0.31, C:0.24, G:0.08, T:0.37
Consensus pattern (93 bp):
ATCTCATACATATTTCATATTAGCCATTCGGCTTTAACAAATATACATATCTCATACATATTTCA
CATTAGCCATTCGGCTACCACATAATAT
Found at i:23314280 original size:49 final size:47
Alignment explanation
Indices: 23314012--23314371 Score: 576
Period size: 47 Copynumber: 7.6 Consensus size: 47
23314002 CCCTTCGGGA
* * * * * *
23314012 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
23314059 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
23314106 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
23314153 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
23314200 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
23314247 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
23314296 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
23314345 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
23314372 TATTCAAATA
Statistics
Matches: 297, Mismatches: 14, Indels: 4
0.94 0.04 0.01
Matches are distributed among these distances:
47 203 0.68
49 94 0.32
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:23316078 original size:13 final size:13
Alignment explanation
Indices: 23316060--23316084 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
23316050 TACTAAATTT
23316060 TCATGGATTCAAA
1 TCATGGATTCAAA
23316073 TCATGGATTCAA
1 TCATGGATTCAA
23316085 TATACCATTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TCATGGATTCAAA
Found at i:23317032 original size:58 final size:57
Alignment explanation
Indices: 23316930--23317116 Score: 231
Period size: 58 Copynumber: 3.3 Consensus size: 57
23316920 GCTGTCGCAG
* * * *
23316930 ATCTCGCACACATAGTGCTTGGTTGAA-GAACTCGCACACACAGTGCCTCAATTACC
1 ATCTCGCACACATAATGCTCGGTTAAAGGAATTCGCACACACAGTGCCTCAATTACC
*
23316986 AATCTCGCACACATAATGCTCGGTTAAAGGAATTCGCACACACAGTGCCTCAATTACTG
1 -ATCTCGCACACATAATGCTCGGTTAAAGGAATTCGCACACACAGTGCCTCAATTAC-C
* * * *
23317045 ATCTCGCACACATAGTGCTCGGTTAACGGAATTTGCACACATAGTGCCTCTAA-T--C
1 ATCTCGCACACATAATGCTCGGTTAAAGGAATTCGCACACACAGTGCCTC-AATTACC
23317100 AT-TCGCACACATAATGC
1 ATCTCGCACACATAATGC
23317117 CCATATTCAT
Statistics
Matches: 116, Mismatches: 11, Indels: 9
0.85 0.08 0.07
Matches are distributed among these distances:
54 14 0.12
55 2 0.02
57 24 0.21
58 74 0.64
59 2 0.02
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (57 bp):
ATCTCGCACACATAATGCTCGGTTAAAGGAATTCGCACACACAGTGCCTCAATTACC
Found at i:23317082 original size:29 final size:29
Alignment explanation
Indices: 23316933--23317091 Score: 114
Period size: 29 Copynumber: 5.5 Consensus size: 29
23316923 GTCGCAGATC
* *
23316933 TCGCACACATAGTGCTTGGTTGAA--GAAC
1 TCGCACACATAGTGCTCGGTT-AACGGAAT
* ** *
23316961 TCGCACACACAGTGCCTCAATT-AC-CAAT
1 TCGCACACATAGTG-CTCGGTTAACGGAAT
* *
23316989 CTCGCACACATAATGCTCGGTTAAAGGAAT
1 -TCGCACACATAGTGCTCGGTTAACGGAAT
* ** *
23317019 TCGCACACACAGTGCCTCAATT-ACTG-AT
1 TCGCACACATAGTG-CTCGGTTAACGGAAT
23317047 CTCGCACACATAGTGCTCGGTTAACGGAAT
1 -TCGCACACATAGTGCTCGGTTAACGGAAT
*
23317077 TTGCACACATAGTGC
1 TCGCACACATAGTGC
23317092 CTCTAATCAT
Statistics
Matches: 99, Mismatches: 23, Indels: 17
0.71 0.17 0.12
Matches are distributed among these distances:
27 1 0.01
28 27 0.27
29 61 0.62
30 10 0.10
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.24
Consensus pattern (29 bp):
TCGCACACATAGTGCTCGGTTAACGGAAT
Found at i:23317309 original size:43 final size:43
Alignment explanation
Indices: 23317248--23317423 Score: 325
Period size: 43 Copynumber: 4.1 Consensus size: 43
23317238 CCTTGCTCGA
**
23317248 ATCACCGGCATTAAGCCTGCTAGGCACGAAGGCCCGAATACAT
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAT
*
23317291 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAACACAT
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAT
23317334 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAT
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAT
23317377 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAT
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAT
23317420 ATCA
1 ATCA
23317424 TCGAGTTTCA
Statistics
Matches: 129, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
43 129 1.00
ACGTcount: A:0.31, C:0.32, G:0.24, T:0.12
Consensus pattern (43 bp):
ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAT
Found at i:23319180 original size:37 final size:37
Alignment explanation
Indices: 23319119--23319267 Score: 244
Period size: 37 Copynumber: 4.0 Consensus size: 37
23319109 CTTTAGCTCG
* *
23319119 AATAATCCCCACACGTAGTTATCGGGTCTTACCCGGA
1 AATAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
* *
23319156 AAAAATCTCCACAAGTAGTCATCGGGTCTTACCCGGA
1 AATAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
*
23319193 CATAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AATAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
*
23319230 CATAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AATAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
23319267 A
1 A
23319268 TATATTTCCA
Statistics
Matches: 104, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 104 1.00
ACGTcount: A:0.28, C:0.30, G:0.19, T:0.23
Consensus pattern (37 bp):
AATAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
Found at i:23319465 original size:48 final size:48
Alignment explanation
Indices: 23319407--23319647 Score: 376
Period size: 48 Copynumber: 5.0 Consensus size: 48
23319397 ATATACACAC
* *
23319407 ATCTCCTACATATTTCACATTAGCCATTCGGCTTTACCAAATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
23319455 ATCTCATACATATTTCACATTAGCCATTCGGATTTACCACATATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
** *
23319503 ATCTCATACATATTTCATGTTAGCCATTCGGGTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
23319551 ATCTCAAACATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
23319599 ATCTCATACATATTTCA-ATTAGCCATTCGGCTTTACCACACATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
23319646 AT
1 AT
23319648 TTATCTTGTA
Statistics
Matches: 178, Mismatches: 15, Indels: 1
0.92 0.08 0.01
Matches are distributed among these distances:
47 31 0.17
48 147 0.83
ACGTcount: A:0.32, C:0.24, G:0.07, T:0.37
Consensus pattern (48 bp):
ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
Found at i:23323235 original size:13 final size:13
Alignment explanation
Indices: 23323219--23323244 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
23323209 CTGGACACAC
23323219 GCCCGTGTCCTTT
1 GCCCGTGTCCTTT
23323232 GCCCGTGTCCTTT
1 GCCCGTGTCCTTT
23323245 CACACGGCCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.00, C:0.38, G:0.23, T:0.38
Consensus pattern (13 bp):
GCCCGTGTCCTTT
Found at i:23324378 original size:92 final size:96
Alignment explanation
Indices: 23324210--23324384 Score: 250
Period size: 92 Copynumber: 1.9 Consensus size: 96
23324200 CCTCATCGAG
* * * * *
23324210 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCGTACTTACATGCTGATGTCATGTCC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCACTCGTACTCACATGCGGATGCCAAGTCC
*
23324275 CACACATGGTCTTACACTGACATGTCTCGTA
66 CAAACATGGTCTTACACTGACATGTCTCGTA
* *
23324306 GCCGATG-CATGTCCCGGACAT-GTCTTACACTGGCACTCGT-CTCA-ATGCGGATGCCAAGTCC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCACTCGTACTCACATGCGGATGCCAAGTCC
23324367 CAAACATGGTCTTACACT
66 CAAACATGGTCTTACACT
23324385 AGCACACAAA
Statistics
Matches: 71, Mismatches: 8, Indels: 4
0.86 0.10 0.05
Matches are distributed among these distances:
92 31 0.44
93 3 0.04
94 17 0.24
95 13 0.18
96 7 0.10
ACGTcount: A:0.22, C:0.31, G:0.20, T:0.27
Consensus pattern (96 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCACTCGTACTCACATGCGGATGCCAAGTCC
CAAACATGGTCTTACACTGACATGTCTCGTA
Found at i:23325814 original size:29 final size:28
Alignment explanation
Indices: 23325765--23325819 Score: 83
Period size: 29 Copynumber: 1.9 Consensus size: 28
23325755 TATCCGAAGT
23325765 ACTGATATCATGGCCCAAAGCCAAATCA
1 ACTGATATCATGGCCCAAAGCCAAATCA
* *
23325793 ACTGATATTCATGGGCCGAAGCCAAAT
1 ACTGATA-TCATGGCCCAAAGCCAAAT
23325820 TGGTATAACT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
28 7 0.29
29 17 0.71
ACGTcount: A:0.36, C:0.25, G:0.18, T:0.20
Consensus pattern (28 bp):
ACTGATATCATGGCCCAAAGCCAAATCA
Found at i:23336698 original size:22 final size:24
Alignment explanation
Indices: 23336664--23336710 Score: 62
Period size: 22 Copynumber: 2.0 Consensus size: 24
23336654 TTAAGTAGTG
23336664 AAATGGAAGAAAAAAAAAAGAGAA
1 AAATGGAAGAAAAAAAAAAGAGAA
* *
23336688 AAAT-GAA-AAAATAAAAAGTGAA
1 AAATGGAAGAAAAAAAAAAGAGAA
23336710 A
1 A
23336711 TGGATATGTC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
22 14 0.67
23 3 0.14
24 4 0.19
ACGTcount: A:0.74, C:0.00, G:0.17, T:0.09
Consensus pattern (24 bp):
AAATGGAAGAAAAAAAAAAGAGAA
Found at i:23336711 original size:20 final size:21
Alignment explanation
Indices: 23336660--23336712 Score: 54
Period size: 22 Copynumber: 2.4 Consensus size: 21
23336650 TGAATTAAGT
23336660 AGTGAAATGGAAGAAAAAAAAA
1 AGTGAAAT-GAAGAAAAAAAAA
* *
23336682 AGAGAAAAATGAA-AAAATAAAA
1 AGTG--AAATGAAGAAAAAAAAA
23336704 AGTGAAATG
1 AGTGAAATG
23336713 GATATGTCTA
Statistics
Matches: 26, Mismatches: 3, Indels: 6
0.74 0.09 0.17
Matches are distributed among these distances:
20 5 0.19
22 14 0.54
23 3 0.12
24 4 0.15
ACGTcount: A:0.68, C:0.00, G:0.21, T:0.11
Consensus pattern (21 bp):
AGTGAAATGAAGAAAAAAAAA
Found at i:23341271 original size:42 final size:42
Alignment explanation
Indices: 23341224--23341328 Score: 129
Period size: 43 Copynumber: 2.5 Consensus size: 42
23341214 GGGGTGTTAC
** * *
23341224 ACCATATCTGGGATATGGCATCGATACGATCTTTCGTGTAAG
1 ACCATATCTGGGATATGGCATCGATACGAGATTACATGTAAG
* * * *
23341266 ACCATAGCTGGGCTATTGGCATTGATATGAGATTACATGTAAG
1 ACCATATCTGGGATA-TGGCATCGATACGAGATTACATGTAAG
23341309 ACCATATCTGGGATATGGCA
1 ACCATATCTGGGATATGGCA
23341329 CTGGTATGGT
Statistics
Matches: 52, Mismatches: 10, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
42 18 0.35
43 34 0.65
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.30
Consensus pattern (42 bp):
ACCATATCTGGGATATGGCATCGATACGAGATTACATGTAAG
Found at i:23350077 original size:5 final size:5
Alignment explanation
Indices: 23350069--23350107 Score: 60
Period size: 5 Copynumber: 7.6 Consensus size: 5
23350059 AACAAAACCC
*
23350069 AAAGA AAAGGC AAAGA AAAGA AAAGA AAAGA AAAGA AAA
1 AAAGA AAA-GA AAAGA AAAGA AAAGA AAAGA AAAGA AAA
23350108 AGCTTTGATT
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
5 27 0.87
6 4 0.13
ACGTcount: A:0.77, C:0.03, G:0.21, T:0.00
Consensus pattern (5 bp):
AAAGA
Found at i:23357388 original size:53 final size:54
Alignment explanation
Indices: 23357206--23357439 Score: 205
Period size: 55 Copynumber: 4.4 Consensus size: 54
23357196 ATTAAGGTTT
* * **
23357206 AAGGATACCATGTAAGTCCATGCCAAGGCATGGAAATTGGTAAGGTTTC-TAAGTA
1 AAGGATACCATGTAAGACCATGCCAAGGCAT-GACATTGGTAA-GTTTCATAAGGC
* * * * *
23357261 AAGGATATCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTTCTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGGCATGACATTGGTAAGTTTC-ATAAGGC
* *
23357316 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGACATTGGTGAG-TTCATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGGCATGACATTGGTAAGTTTCATAAGGC
* * * * * * *
23357369 AGGGATACAATGTAAGACCATGTCGAGACATGGCAATGGTAAGTTTC--AA---
1 AAGGATACCATGTAAGACCATGCCAAGGCATGACATTGGTAAGTTTCATAAGGC
*
23357418 AAGGATACCACGTAAGACCATG
1 AAGGATACCATGTAAGACCATG
23357440 AAAAGTCATG
Statistics
Matches: 146, Mismatches: 28, Indels: 16
0.77 0.15 0.08
Matches are distributed among these distances:
49 19 0.13
52 5 0.03
53 42 0.29
54 14 0.10
55 62 0.42
56 4 0.03
ACGTcount: A:0.35, C:0.17, G:0.25, T:0.23
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGGCATGACATTGGTAAGTTTCATAAGGC
Found at i:23357412 original size:108 final size:110
Alignment explanation
Indices: 23357213--23357415 Score: 279
Period size: 108 Copynumber: 1.9 Consensus size: 110
23357203 TTTAAGGATA
* *
23357213 CCATGTAAGTCCATGCCAAGGCATGGAAATTGGTAAGGTTTCTAAGTAAAGGATATCATGTAAGA
1 CCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTCTAAGGAAAGGATATCATGTAAGA
*
23357278 CCATGTCAAGACATGGCATTGATAAGTTTCTATAAGGCAAAGGTC
66 CCATGTCAAGACATGGCAATGATAAGTTTCTATAAGGCAAAGGTC
* * * *
23357323 CCATGTAAGACCATGCCAAGGCAT-GACATTGGTGA-G-TTCATAAGGCAGGGATA-CAATGTAA
1 CCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTC-TAAGGAAAGGATATC-ATGTAA
* *
23357384 GACCATGTCGAGACATGGCAATGGTAAGTTTC
64 GACCATGTCAAGACATGGCAATGATAAGTTTC
23357416 AAAAGGATAC
Statistics
Matches: 82, Mismatches: 9, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
107 4 0.05
108 46 0.56
109 9 0.11
110 23 0.28
ACGTcount: A:0.33, C:0.17, G:0.25, T:0.25
Consensus pattern (110 bp):
CCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTCTAAGGAAAGGATATCATGTAAGA
CCATGTCAAGACATGGCAATGATAAGTTTCTATAAGGCAAAGGTC
Found at i:23357679 original size:16 final size:16
Alignment explanation
Indices: 23357658--23357688 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
23357648 ATAAATTTGA
23357658 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
23357674 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
23357689 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Done.