Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 82679320
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4050000 characters in sequence are not A, C, G, or T
File 84 of 255
Found at i:25638452 original size:27 final size:27
Alignment explanation
Indices: 25638422--25638702 Score: 151
Period size: 27 Copynumber: 10.4 Consensus size: 27
25638412 TTCTACCCTA
*
25638422 CAAGGGTATTTCGATAATTTTGTAAAT
1 CAAGGGTATTTCGATAATTTTATAAAT
*** * *
25638449 CAAGGGTAAAACGGTAATTCTATAAAT
1 CAAGGGTATTTCGATAATTTTATAAAT
* * *
25638476 CAAGGGTACTTT-GGTAATTTTACAAGT
1 CAAGGGTA-TTTCGATAATTTTATAAAT
* * * **
25638503 CGAGGGTATTTCAATAATTTTACAGGTT
1 CAAGGGTATTTCGATAATTTTATA-AAT
* * *
25638531 GAA-GGTATTTC-AGTAATTTCACAAAT
1 CAAGGGTATTTCGA-TAATTTTATAAAT
* * *
25638557 CAAGGGTATTTTGGTAATTTTAGAAA-
1 CAAGGGTATTTCGATAATTTTATAAAT
* * * *
25638583 CTAGGGGTATTTTGATAATTTTACAAAC
1 C-AAGGGTATTTCGATAATTTTATAAAT
* * *
25638611 CAGGGGTATTTTGGTAATTTTATAAA-
1 CAAGGGTATTTCGATAATTTTATAAAT
* *
25638637 CAAAGGGTATTT-TAGTAATTTTATAAAC
1 C-AAGGGTATTTCGA-TAATTTTATAAAT
* * * * *
25638665 CAGGGGTATTTTGGTAATTTTGTAAAC
1 CAAGGGTATTTCGATAATTTTATAAAT
*
25638692 CATGGGTATTT
1 CAAGGGTATTT
25638703 TGGTGATTTT
Statistics
Matches: 202, Mismatches: 40, Indels: 24
0.76 0.15 0.09
Matches are distributed among these distances:
26 9 0.04
27 189 0.94
28 4 0.02
ACGTcount: A:0.33, C:0.09, G:0.20, T:0.38
Consensus pattern (27 bp):
CAAGGGTATTTCGATAATTTTATAAAT
Found at i:25638466 original size:81 final size:81
Alignment explanation
Indices: 25638301--25638470 Score: 191
Period size: 81 Copynumber: 2.1 Consensus size: 81
25638291 AGTATTTCAA
* **
25638301 TAATTCTACCCTACAAGGGTATTTAGGTATTTCTACCCTAAAAGGGTATTTCGGTAATTCTACCC
1 TAATTCTACCCTACAAGGGTATTTAGGTATTTCTACCCTAAAAGGGTATTTCGATAATTCTACAA
* ****
25638366 TACAGGGGTATTTTAG
66 TACAAGGGTAAAACAG
* * * *
25638382 TAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCGATAATTTTGTA-
1 TAATTCTACCCTACAAGGGTATTTAGGTATTTCTACCCTAAAAGGGTATTTCGATAA--TTCTAC
*
25638446 AAT-CAAGGGTAAAACGG
64 AATACAAGGGTAAAACAG
25638463 TAATTCTA
1 TAATTCTA
25638471 TAAATCAAGG
Statistics
Matches: 74, Mismatches: 13, Indels: 4
0.81 0.14 0.04
Matches are distributed among these distances:
81 69 0.93
82 1 0.01
83 4 0.05
ACGTcount: A:0.29, C:0.18, G:0.18, T:0.35
Consensus pattern (81 bp):
TAATTCTACCCTACAAGGGTATTTAGGTATTTCTACCCTAAAAGGGTATTTCGATAATTCTACAA
TACAAGGGTAAAACAG
Found at i:25638619 original size:81 final size:81
Alignment explanation
Indices: 25638534--25638702 Score: 223
Period size: 81 Copynumber: 2.1 Consensus size: 81
25638524 ACAGGTTGAA
* *
25638534 GGTATTTCAGTAATTTCACAAATC-AAGGGTATTTTGGTAATTTTAGAAACTAGGGGTATTTTGA
1 GGTATTTCAGTAATTTCACAAA-CAAAGGGTATTTTAGTAATTTTAGAAACCAGGGGTATTTTGA
25638598 TAATTTTACAAACCAGG
65 TAATTTTACAAACCAGG
** * * * *
25638615 GGTATTTTGGTAATTTTATAAACAAAGGGTATTTTAGTAATTTTATAAACCAGGGGTATTTTGGT
1 GGTATTTCAGTAATTTCACAAACAAAGGGTATTTTAGTAATTTTAGAAACCAGGGGTATTTTGAT
** *
25638680 AATTTTGTAAACCATG
66 AATTTTACAAACCAGG
25638696 GGTATTT
1 GGTATTT
25638703 TGGTGATTTT
Statistics
Matches: 76, Mismatches: 11, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
80 1 0.01
81 75 0.99
ACGTcount: A:0.32, C:0.08, G:0.20, T:0.40
Consensus pattern (81 bp):
GGTATTTCAGTAATTTCACAAACAAAGGGTATTTTAGTAATTTTAGAAACCAGGGGTATTTTGAT
AATTTTACAAACCAGG
Found at i:25638703 original size:27 final size:27
Alignment explanation
Indices: 25638560--25638713 Score: 218
Period size: 27 Copynumber: 5.7 Consensus size: 27
25638550 CACAAATCAA
* *
25638560 GGGTATTTTGGTAATTTTAGAAACTAG
1 GGGTATTTTGGTAATTTTATAAACCAG
* *
25638587 GGGTATTTTGATAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTATAAACCAG
* *
25638614 GGGTATTTTGGTAATTTTATAAACAAA
1 GGGTATTTTGGTAATTTTATAAACCAG
*
25638641 GGGTATTTTAGTAATTTTATAAACCAG
1 GGGTATTTTGGTAATTTTATAAACCAG
* *
25638668 GGGTATTTTGGTAATTTTGTAAACCAT
1 GGGTATTTTGGTAATTTTATAAACCAG
*
25638695 GGGTATTTTGGTGATTTTA
1 GGGTATTTTGGTAATTTTA
25638714 CAAATTGAGG
Statistics
Matches: 112, Mismatches: 15, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 112 1.00
ACGTcount: A:0.30, C:0.06, G:0.22, T:0.42
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTATAAACCAG
Found at i:25638703 original size:81 final size:81
Alignment explanation
Indices: 25638558--25638713 Score: 240
Period size: 81 Copynumber: 1.9 Consensus size: 81
25638548 TTCACAAATC
* *
25638558 AAGGGTATTTTGGTAATTTTAGAAACTAGGGGTATTTTGATAATTTTACAAACCAGGGGTATTTT
1 AAGGGTATTTTAGTAATTTTAGAAACCAGGGGTATTTTGATAATTTTACAAACCAGGGGTATTTT
25638623 GGTAATTTTATAAACA
66 GGTAATTTTATAAACA
* * ** *
25638639 AAGGGTATTTTAGTAATTTTATAAACCAGGGGTATTTTGGTAATTTTGTAAACCATGGGTATTTT
1 AAGGGTATTTTAGTAATTTTAGAAACCAGGGGTATTTTGATAATTTTACAAACCAGGGGTATTTT
*
25638704 GGTGATTTTA
66 GGTAATTTTA
25638714 CAAATTGAGG
Statistics
Matches: 67, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
81 67 1.00
ACGTcount: A:0.31, C:0.06, G:0.22, T:0.42
Consensus pattern (81 bp):
AAGGGTATTTTAGTAATTTTAGAAACCAGGGGTATTTTGATAATTTTACAAACCAGGGGTATTTT
GGTAATTTTATAAACA
Found at i:25638730 original size:54 final size:54
Alignment explanation
Indices: 25638534--25638717 Score: 226
Period size: 54 Copynumber: 3.4 Consensus size: 54
25638524 ACAGGTTGAA
** * * * * *
25638534 GGTATTTCAGTAATTTCACAAATCAAGGGTATTTTGGTAATTTTAG-AAACTAGG
1 GGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTT-GTAAACAAAG
* *
25638588 GGTATTTTGATAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACAAAG
1 GGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTGTAAACAAAG
* * * *
25638642 GGTATTTTAGTAATTTTATAAACCAGGGGTATTTTGGTAATTTTGTAAACCATG
1 GGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTGTAAACAAAG
*
25638696 GGTATTTTGGTGATTTTACAAA
1 GGTATTTTGGTAATTTTACAAA
25638718 TTGAGGACAT
Statistics
Matches: 111, Mismatches: 18, Indels: 2
0.85 0.14 0.02
Matches are distributed among these distances:
54 111 1.00
ACGTcount: A:0.32, C:0.08, G:0.20, T:0.40
Consensus pattern (54 bp):
GGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTGTAAACAAAG
Found at i:25638730 original size:81 final size:81
Alignment explanation
Indices: 25638564--25638738 Score: 224
Period size: 81 Copynumber: 2.2 Consensus size: 81
25638554 AATCAAGGGT
* *
25638564 ATTTTGGTAATTTTAGAAACTAGGGGTATTTTGATAATTTTACAAACCAGGGGTATTTTGGTAAT
1 ATTTTAGTAATTTTAGAAACCAGGGGTATTTTGATAATTTTACAAACCAGGGGTATTTTGGTAAT
* **
25638629 TTTATAAACAAAGGGT
66 TTTACAAACAAAGGAC
* * ** * *
25638645 ATTTTAGTAATTTTATAAACCAGGGGTATTTTGGTAATTTTGTAAACCATGGGTATTTTGGTGAT
1 ATTTTAGTAATTTTAGAAACCAGGGGTATTTTGATAATTTTACAAACCAGGGGTATTTTGGTAAT
***
25638710 TTTACAAATTGAGGAC
66 TTTACAAACAAAGGAC
25638726 ATTTTAGTAATTT
1 ATTTTAGTAATTT
25638739 GGTAAACTAA
Statistics
Matches: 80, Mismatches: 14, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
81 80 1.00
ACGTcount: A:0.31, C:0.06, G:0.20, T:0.42
Consensus pattern (81 bp):
ATTTTAGTAATTTTAGAAACCAGGGGTATTTTGATAATTTTACAAACCAGGGGTATTTTGGTAAT
TTTACAAACAAAGGAC
Found at i:25645151 original size:35 final size:35
Alignment explanation
Indices: 25645073--25645143 Score: 97
Period size: 35 Copynumber: 2.0 Consensus size: 35
25645063 ATATATAAGC
* *
25645073 TCAATATAAACTCACATGTAACCAAATTCACATGT
1 TCAATATAAACTCACATGTAACCAAATACACAAGT
* * *
25645108 TCAATATAAATTCACATGTAACCGAATACTCAAGT
1 TCAATATAAACTCACATGTAACCAAATACACAAGT
25645143 T
1 T
25645144 TGATATAAGC
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
35 31 1.00
ACGTcount: A:0.42, C:0.21, G:0.07, T:0.30
Consensus pattern (35 bp):
TCAATATAAACTCACATGTAACCAAATACACAAGT
Found at i:25652025 original size:10 final size:10
Alignment explanation
Indices: 25651999--25652038 Score: 53
Period size: 10 Copynumber: 3.9 Consensus size: 10
25651989 ACTGCATAAA
*
25651999 CTTTCTGTTT
1 CTTTCTTTTT
25652009 CTTTCTTTTT
1 CTTTCTTTTT
25652019 CTTTCTTTTTT
1 CTTTC-TTTTT
*
25652030 TTTTCTTTT
1 CTTTCTTTT
25652039 AAAGCTATGA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
10 18 0.67
11 9 0.33
ACGTcount: A:0.00, C:0.17, G:0.03, T:0.80
Consensus pattern (10 bp):
CTTTCTTTTT
Found at i:25654651 original size:113 final size:114
Alignment explanation
Indices: 25654443--25654656 Score: 261
Period size: 114 Copynumber: 1.9 Consensus size: 114
25654433 AGCAAAAATC
* * * *
25654443 AAAAGTATCGATACTCTGAACATAGTATCGATACCTTGCAAAAATAATCGATATCCCTGCCTGGT
1 AAAAGTATCAATACCCTGAACAAAGTATCGATACCTTGCAAAAATAATCAATATCCCTGCCTGGT
* * *
25654508 ATCAATACCGATTTGAGCTTTAATGTTTTGGAAAATTGAAAAAAAATAA
66 ATCAATACCGATTTAAGCATCAATGTTTTGGAAAATTGAAAAAAAATAA
* * * *
25654557 AAAAGTATCAATACCC-GTAACAAAGTATCGATACCTTGCAAAATTTATCAATA-CCTTTCCTGG
1 AAAAGTATCAATACCCTG-AACAAAGTATCGATACCTTGCAAAAATAATCAATATCCCTGCCTGG
* * * * *
25654620 TATCGATATCGTTTTAAGGATCGATGTTTTGGAAAAT
65 TATCAATACCGATTTAAGCATCAATGTTTTGGAAAAT
25654657 CAAAGAAAAA
Statistics
Matches: 83, Mismatches: 16, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
113 38 0.46
114 45 0.54
ACGTcount: A:0.37, C:0.16, G:0.15, T:0.31
Consensus pattern (114 bp):
AAAAGTATCAATACCCTGAACAAAGTATCGATACCTTGCAAAAATAATCAATATCCCTGCCTGGT
ATCAATACCGATTTAAGCATCAATGTTTTGGAAAATTGAAAAAAAATAA
Found at i:25658517 original size:40 final size:40
Alignment explanation
Indices: 25658473--25658694 Score: 304
Period size: 40 Copynumber: 5.6 Consensus size: 40
25658463 TATTCGAATG
* *
25658473 ATATCCGGGTTAAGTCCCGAAGGCATTTATGCTAGTGATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
*
25658513 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
25658553 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
* * * *
25658593 ATATTCGGGCTAAGTCCCGAAGGCTTTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
* * * * *
25658633 ATATCTGGGCTAAGACCCGAAGGCATTTGCGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGATT
*
25658673 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
25658695 TACTTGGGTT
Statistics
Matches: 163, Mismatches: 18, Indels: 3
0.89 0.10 0.02
Matches are distributed among these distances:
39 14 0.09
40 147 0.90
41 2 0.01
ACGTcount: A:0.23, C:0.21, G:0.26, T:0.30
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
Found at i:25663201 original size:27 final size:26
Alignment explanation
Indices: 25663153--25663204 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
25663143 GCGAGGCTAC
*
25663153 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
25663179 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
25663205 TTGCAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:25663885 original size:27 final size:27
Alignment explanation
Indices: 25663855--25664185 Score: 466
Period size: 27 Copynumber: 12.3 Consensus size: 27
25663845 GGGGCAAAAT
* * *
25663855 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
25663882 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
25663909 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
**
25663936 GGTAATTCTATTCTAC-AGAGGTATTTC
1 GGTAATTCTACCCTACAAG-GGTATTTC
* *
25663963 GATAATTCTACCCTATAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
**
25663990 AATAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
25664017 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
25664044 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
25664071 GGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
25664098 AGAAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
25664125 GGTAATTCTATCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
25664152 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
25664179 GGTAATT
1 GGTAATT
25664186 TTACAACTTA
Statistics
Matches: 272, Mismatches: 30, Indels: 4
0.89 0.10 0.01
Matches are distributed among these distances:
26 2 0.01
27 268 0.99
28 2 0.01
ACGTcount: A:0.26, C:0.21, G:0.19, T:0.35
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:25668644 original size:27 final size:27
Alignment explanation
Indices: 25668614--25668671 Score: 80
Period size: 27 Copynumber: 2.1 Consensus size: 27
25668604 ATATATGAAA
25668614 ACTTGAGATGATGATATTTGTACATGG
1 ACTTGAGATGATGATATTTGTACATGG
* ** *
25668641 ACTTTATTTGATGATATTTGTATATGG
1 ACTTGAGATGATGATATTTGTACATGG
25668668 ACTT
1 ACTT
25668672 TATTTGATAT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.28, C:0.07, G:0.21, T:0.45
Consensus pattern (27 bp):
ACTTGAGATGATGATATTTGTACATGG
Found at i:25668672 original size:27 final size:27
Alignment explanation
Indices: 25668622--25668679 Score: 107
Period size: 27 Copynumber: 2.1 Consensus size: 27
25668612 AAACTTGAGA
25668622 TGATGATATTTGTACATGGACTTTATT
1 TGATGATATTTGTACATGGACTTTATT
*
25668649 TGATGATATTTGTATATGGACTTTATT
1 TGATGATATTTGTACATGGACTTTATT
25668676 TGAT
1 TGAT
25668680 ATAAGATTTG
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.26, C:0.05, G:0.19, T:0.50
Consensus pattern (27 bp):
TGATGATATTTGTACATGGACTTTATT
Found at i:25671569 original size:18 final size:18
Alignment explanation
Indices: 25671532--25671570 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
25671522 TTGGAAATCA
*
25671532 AAATTATTAAAAGATGAT
1 AAATTATTAAAAGATAAT
25671550 AAATTATTAAATAGA-AAT
1 AAATTATTAAA-AGATAAT
25671568 AAA
1 AAA
25671571 AATCATTTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 16 0.84
19 3 0.16
ACGTcount: A:0.62, C:0.00, G:0.08, T:0.31
Consensus pattern (18 bp):
AAATTATTAAAAGATAAT
Found at i:25675917 original size:47 final size:47
Alignment explanation
Indices: 25675848--25675940 Score: 186
Period size: 47 Copynumber: 2.0 Consensus size: 47
25675838 GGATGAGTAG
25675848 GATTTTCGATTACATTACTATTGCTATTACTGAAATGGGCTAAGGCA
1 GATTTTCGATTACATTACTATTGCTATTACTGAAATGGGCTAAGGCA
25675895 GATTTTCGATTACATTACTATTGCTATTACTGAAATGGGCTAAGGC
1 GATTTTCGATTACATTACTATTGCTATTACTGAAATGGGCTAAGGC
25675941 CCACACTTAT
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 46 1.00
ACGTcount: A:0.29, C:0.15, G:0.19, T:0.37
Consensus pattern (47 bp):
GATTTTCGATTACATTACTATTGCTATTACTGAAATGGGCTAAGGCA
Found at i:25686031 original size:46 final size:46
Alignment explanation
Indices: 25685981--25686153 Score: 201
Period size: 46 Copynumber: 3.7 Consensus size: 46
25685971 TGGTTGAGCA
25685981 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * * *
25686027 TCCGAACTCGTTGAGTTGAGTCTGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
25686072 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
25686120 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
25686154 GGGGCGGGTT
Statistics
Matches: 105, Mismatches: 13, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 60 0.57
47 28 0.27
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:25686137 original size:93 final size:93
Alignment explanation
Indices: 25685978--25686148 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
25685968 GGATGGTTGA
* *
25685978 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
*
25686043 TGAGTCTGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
*
25686071 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
25686136 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
25686149 ACTTAGGGGC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:25693036 original size:46 final size:46
Alignment explanation
Indices: 25692986--25693158 Score: 210
Period size: 46 Copynumber: 3.7 Consensus size: 46
25692976 TGGTTGAGCA
25692986 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
25693032 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
25693077 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
25693125 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
25693159 GGGGCGGGTT
Statistics
Matches: 107, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 61 0.57
47 29 0.27
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:25693142 original size:93 final size:93
Alignment explanation
Indices: 25692983--25693153 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
25692973 GGATGGTTGA
* *
25692983 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
25693048 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
*
25693076 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
25693141 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
25693154 ACTTAGGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:25699242 original size:40 final size:40
Alignment explanation
Indices: 25699205--25699285 Score: 128
Period size: 40 Copynumber: 2.0 Consensus size: 40
25699195 GCTACTCGTT
*
25699205 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATT-TAGTAACTCGCA
*
25699245 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
25699285 C
1 C
25699286 NNNNNNNNNN
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
40 36 0.95
41 2 0.05
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.23
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
Found at i:25720755 original size:24 final size:24
Alignment explanation
Indices: 25720728--25720813 Score: 75
Period size: 24 Copynumber: 3.5 Consensus size: 24
25720718 TGTTTCCTCA
25720728 CACACATAGTGCTATATAATCTCG
1 CACACATAGTGCTATATAATCTCG
* * * * *
25720752 CACACATAGTGCCATGTAGTTTTTG
1 CACACATAGTGCTATATA-ATCTCG
** *
25720777 CACACATAGTG-TCGCATAACCTCG
1 CACACATAGTGCT-ATATAATCTCG
25720801 CACACATAGTGCT
1 CACACATAGTGCT
25720814 GAAATTTCTT
Statistics
Matches: 46, Mismatches: 13, Indels: 5
0.72 0.20 0.08
Matches are distributed among these distances:
24 29 0.63
25 17 0.37
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.28
Consensus pattern (24 bp):
CACACATAGTGCTATATAATCTCG
Found at i:25720781 original size:49 final size:47
Alignment explanation
Indices: 25720677--25720812 Score: 125
Period size: 49 Copynumber: 2.8 Consensus size: 47
25720667 TTTAAAGGTC
* *
25720677 CGCACACATAGTGCTCT-TACTCATTCGCACACATAGTGCCGTGTTTCCT
1 CGCACACATAGTGCTATATAATC--TCGCACACATAGTGCCGTGTTT-CT
*
25720726 CACACACATAGTGCTATATAATCTCGCACACATAGTGCCATGTAGTTT-T
1 CGCACACATAGTGCTATATAATCTCGCACACATAGTGCC--GT-GTTTCT
* ** *
25720775 TGCACACATAGTG-TCGCATAACCTCGCACACATAGTGC
1 CGCACACATAGTGCT-ATATAATCTCGCACACATAGTGC
25720813 TGAAATTTCT
Statistics
Matches: 74, Mismatches: 8, Indels: 10
0.80 0.09 0.11
Matches are distributed among these distances:
48 17 0.23
49 47 0.64
50 6 0.08
51 4 0.05
ACGTcount: A:0.26, C:0.29, G:0.16, T:0.28
Consensus pattern (47 bp):
CGCACACATAGTGCTATATAATCTCGCACACATAGTGCCGTGTTTCT
Found at i:25725060 original size:42 final size:42
Alignment explanation
Indices: 25725001--25725122 Score: 147
Period size: 43 Copynumber: 2.9 Consensus size: 42
25724991 TTAGGGTTAC
*
25725001 TAAGATTACGTGTAAGACCATATATGGGATATGGCATCGATA
1 TAAGATTACATGTAAGACCATATATGGGATATGGCATCGATA
** * * *
25725043 TAAGACTT-CATGTAAGACCATAGCTAGGTTATTGACATCGATA
1 TAAGA-TTACATGTAAGACCATATATGGGATA-TGGCATCGATA
* *
25725086 TGAGATTACATGTGAGACCATATATGGGATATGGCAT
1 TAAGATTACATGTAAGACCATATATGGGATATGGCAT
25725123 TGGTACGGTA
Statistics
Matches: 64, Mismatches: 13, Indels: 6
0.77 0.16 0.07
Matches are distributed among these distances:
42 30 0.47
43 34 0.53
ACGTcount: A:0.34, C:0.13, G:0.23, T:0.30
Consensus pattern (42 bp):
TAAGATTACATGTAAGACCATATATGGGATATGGCATCGATA
Found at i:25735221 original size:40 final size:40
Alignment explanation
Indices: 25735165--25735367 Score: 211
Period size: 40 Copynumber: 5.1 Consensus size: 40
25735155 CGGAATTTAA
* * ** *
25735165 CCGGATATAGCTACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGTTATAGCAACTCGCACAAATGCCTTCGGGACTTAGC
*
25735205 CCGGTTATAGCAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGTTATAGCAACTCGCACAAATGCCTTCGGGACTTAGC
* *
25735245 CCGGATT-TAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGG-TTATAGCAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
25735284 CCGG-AATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGTTA-TAGCAACTCGCACAAATGCCTTCGGGA-CTTAGC
*
25735324 CCGGTTATAGTC-ACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGTTATAG-CAAC-TCGCACAAATGCCTTCGGGACTTAGC
25735364 CCGG
1 CCGG
25735368 ACATCATTCG
Statistics
Matches: 138, Mismatches: 16, Indels: 18
0.80 0.09 0.10
Matches are distributed among these distances:
38 2 0.01
39 31 0.22
40 91 0.66
41 14 0.10
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGTTATAGCAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:25735299 original size:79 final size:81
Alignment explanation
Indices: 25735186--25735368 Score: 225
Period size: 79 Copynumber: 2.3 Consensus size: 81
25735176 TACTCGTTCA
* *
25735186 AATGCCTTCGGGACATAGCCCGG-TTATAGCAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGCAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
*
25735249 ATT-TAGTAAC-TCGCACC
65 -TTATAGTAACTTAGCA-C
* **
25735266 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGT
1 AATGCCTTCGGGACTTAGCCCGGAATATAGCAACTCGCACAAATGCCTTCGGATCTTAACCCGGT
*
25735329 TATAGTCACTTAGCAC
66 TATAGTAACTTAGCAC
*
25735345 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
25735369 CATCATTCGA
Statistics
Matches: 90, Mismatches: 8, Indels: 10
0.83 0.07 0.09
Matches are distributed among these distances:
78 5 0.06
79 57 0.63
80 28 0.31
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.24
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGCAACTCGCACAAATGCCTTCGGATCTTAACCCGGT
TATAGTAACTTAGCAC
Found at i:25738132 original size:8 final size:8
Alignment explanation
Indices: 25738090--25738114 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
25738080 ATATAGACTA
25738090 AATAAAAT
1 AATAAAAT
25738098 AATAAAAT
1 AATAAAAT
25738106 AATAAAAT
1 AATAAAAT
25738114 A
1 A
25738115 TCTTATTAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (8 bp):
AATAAAAT
Found at i:25738138 original size:29 final size:31
Alignment explanation
Indices: 25738087--25738155 Score: 81
Period size: 29 Copynumber: 2.3 Consensus size: 31
25738077 TATATATAGA
*
25738087 CTAAATAAAATAATAAAATAATAA-AA-TAT
1 CTAATTAAAATAATAAAATAATAATAATTAT
* *
25738116 CTTATTAAAAT-ATTAAATAAATAATAATTAT
1 CTAATTAAAATAATAAAAT-AATAATAATTAT
25738147 CTAATTAAA
1 CTAATTAAA
25738156 TAGCTATAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
28 6 0.18
29 14 0.42
30 2 0.06
31 11 0.33
ACGTcount: A:0.61, C:0.04, G:0.00, T:0.35
Consensus pattern (31 bp):
CTAATTAAAATAATAAAATAATAATAATTAT
Found at i:25740014 original size:37 final size:37
Alignment explanation
Indices: 25739955--25740100 Score: 229
Period size: 37 Copynumber: 3.9 Consensus size: 37
25739945 AGCTCAGACG
* *
25739955 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
25739992 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
* *
25740029 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGATA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
* * *
25740066 TAATCTTCACACCTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
25740101 ATATATTTCC
Statistics
Matches: 103, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 103 1.00
ACGTcount: A:0.26, C:0.31, G:0.18, T:0.25
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:25740305 original size:52 final size:52
Alignment explanation
Indices: 25740247--25740389 Score: 268
Period size: 52 Copynumber: 2.8 Consensus size: 52
25740237 GCACATCGCC
* *
25740247 TACATATTTCACACTAGCCATTCGGCTTTACCATATATACATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATACATATCTCA
25740299 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATACATATCTCA
25740351 TACATATTTCACATTAGCCATTCGGCTTTACCACATATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATA
25740390 TGTATGTTCA
Statistics
Matches: 89, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
52 89 1.00
ACGTcount: A:0.32, C:0.27, G:0.06, T:0.35
Consensus pattern (52 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATACATATCTCA
Found at i:25740411 original size:47 final size:47
Alignment explanation
Indices: 25740359--25740552 Score: 280
Period size: 47 Copynumber: 4.1 Consensus size: 47
25740349 CATACATATT
* * * * *
25740359 TCACATTAGCCATTCGGCTTTACCACATATATGTATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* *
25740406 TCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
*
25740453 TCACATTGGCCATTCGGCCTTTTCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * **
25740500 TCACATTGGCCATTCGGCCTTATCTCATATATACACATTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
25740547 TCACAT
1 TCACAT
25740553 AAAATCCTAA
Statistics
Matches: 132, Mismatches: 15, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 132 1.00
ACGTcount: A:0.26, C:0.28, G:0.11, T:0.35
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:25752919 original size:20 final size:18
Alignment explanation
Indices: 25752882--25752932 Score: 59
Period size: 20 Copynumber: 2.7 Consensus size: 18
25752872 CTATAGCAAC
25752882 TCACAATTT-CAATTATT
1 TCACAATTTACAATTATT
25752899 TCACACATTTACAACTTATT
1 TCACA-ATTTACAA-TTATT
*
25752919 TTACAACTTTACAA
1 TCACAA-TTTACAA
25752933 AATAACACTT
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
17 5 0.17
18 4 0.14
19 4 0.14
20 16 0.55
ACGTcount: A:0.37, C:0.22, G:0.00, T:0.41
Consensus pattern (18 bp):
TCACAATTTACAATTATT
Found at i:25759418 original size:27 final size:27
Alignment explanation
Indices: 25759386--25759448 Score: 72
Period size: 27 Copynumber: 2.3 Consensus size: 27
25759376 CTCGATTTAC
**
25759386 AAAATTATTGAAATACCCCTGTAGGGT
1 AAAATTACCGAAATACCCCTGTAGGGT
* * * *
25759413 AGAATTACCGAGATACCCTTGTGGGGT
1 AAAATTACCGAAATACCCCTGTAGGGT
25759440 AAAATTACC
1 AAAATTACC
25759449 ATTTTGCCCT
Statistics
Matches: 29, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.35, C:0.17, G:0.21, T:0.27
Consensus pattern (27 bp):
AAAATTACCGAAATACCCCTGTAGGGT
Found at i:25759458 original size:27 final size:27
Alignment explanation
Indices: 25759428--25759491 Score: 67
Period size: 27 Copynumber: 2.4 Consensus size: 27
25759418 TACCGAGATA
*
25759428 CCCTTGTGGGGTAAAATTACCATTTTG
1 CCCTTGTGGGGTAAAATGACCATTTTG
* * **
25759455 CCCTTAG-GGTGTTAAATGACTGTTTTG
1 CCCTT-GTGGGGTAAAATGACCATTTTG
25759482 CCCTTGTGGG
1 CCCTTGTGGG
25759492 CAAGTGATTG
Statistics
Matches: 29, Mismatches: 6, Indels: 4
0.74 0.15 0.10
Matches are distributed among these distances:
26 1 0.03
27 27 0.93
28 1 0.03
ACGTcount: A:0.17, C:0.19, G:0.27, T:0.38
Consensus pattern (27 bp):
CCCTTGTGGGGTAAAATGACCATTTTG
Found at i:25760083 original size:25 final size:25
Alignment explanation
Indices: 25760055--25760119 Score: 103
Period size: 25 Copynumber: 2.6 Consensus size: 25
25760045 GACTCTGATA
*
25760055 CTGATTCTAATTCTGTCACCTAATT
1 CTGATTCTGATTCTGTCACCTAATT
* *
25760080 CTGATTCTGATTCAGTCACCTGATT
1 CTGATTCTGATTCTGTCACCTAATT
25760105 CTGATTCTGATTCTG
1 CTGATTCTGATTCTG
25760120 ATTCTCATTT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 36 1.00
ACGTcount: A:0.20, C:0.23, G:0.14, T:0.43
Consensus pattern (25 bp):
CTGATTCTGATTCTGTCACCTAATT
Found at i:25760086 original size:6 final size:6
Alignment explanation
Indices: 25760077--25760145 Score: 61
Period size: 6 Copynumber: 11.3 Consensus size: 6
25760067 CTGTCACCTA
* * *
25760077 ATTCTG ATTCTG ATTCAG -TCACCTG ATTCTG ATTCTG ATTCTG ATTCTC
1 ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG
*
25760126 ATTTTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG A-TTCTG AT
25760146 AATGTTTCTT
Statistics
Matches: 50, Mismatches: 8, Indels: 10
0.74 0.12 0.15
Matches are distributed among these distances:
5 2 0.04
6 44 0.88
7 3 0.06
8 1 0.02
ACGTcount: A:0.19, C:0.19, G:0.14, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:25761627 original size:20 final size:18
Alignment explanation
Indices: 25761590--25761640 Score: 59
Period size: 20 Copynumber: 2.7 Consensus size: 18
25761580 CTATAGCAAC
25761590 TCACAATTT-CAATTATT
1 TCACAATTTACAATTATT
25761607 TCACACATTTACAACTTATT
1 TCACA-ATTTACAA-TTATT
*
25761627 TTACAACTTTACAA
1 TCACAA-TTTACAA
25761641 AATAGCCCTT
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
17 5 0.17
18 4 0.14
19 4 0.14
20 16 0.55
ACGTcount: A:0.37, C:0.22, G:0.00, T:0.41
Consensus pattern (18 bp):
TCACAATTTACAATTATT
Found at i:25764905 original size:41 final size:41
Alignment explanation
Indices: 25764852--25764971 Score: 213
Period size: 41 Copynumber: 2.9 Consensus size: 41
25764842 TTTCCAAATC
25764852 AATGAAAAGGTTGAAAAGGATGTTATCCAAAAAGGATATCA
1 AATGAAAAGGTTGAAAAGGATGTTATCCAAAAAGGATATCA
*
25764893 AATGAAATGGTTGAAAAGGATGTTATCCAAAAAGGATATCA
1 AATGAAAAGGTTGAAAAGGATGTTATCCAAAAAGGATATCA
**
25764934 AATGAAAAGGTTGAAAAGGATGTTATTAAAAAAGGATA
1 AATGAAAAGGTTGAAAAGGATGTTATCCAAAAAGGATA
25764972 AAAAATTTAA
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 75 1.00
ACGTcount: A:0.49, C:0.05, G:0.23, T:0.23
Consensus pattern (41 bp):
AATGAAAAGGTTGAAAAGGATGTTATCCAAAAAGGATATCA
Found at i:25766266 original size:18 final size:18
Alignment explanation
Indices: 25766239--25766281 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
25766229 CCCTGTGATC
*
25766239 TCTG-TTTTCC-AACTTT
1 TCTGTTTTTCCAAAATTT
25766255 TCATGTTTTTCCAAAATTT
1 TC-TGTTTTTCCAAAATTT
25766274 TCTGTTTT
1 TCTGTTTT
25766282 GTTTCGATTT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
16 2 0.09
17 2 0.09
18 12 0.52
19 7 0.30
ACGTcount: A:0.16, C:0.19, G:0.07, T:0.58
Consensus pattern (18 bp):
TCTGTTTTTCCAAAATTT
Found at i:25770040 original size:29 final size:29
Alignment explanation
Indices: 25770003--25770079 Score: 109
Period size: 29 Copynumber: 2.7 Consensus size: 29
25769993 CACTTGGCCT
*
25770003 AATCTCATTTATATGGCCCATCAGGCCCA
1 AATCACATTTATATGGCCCATCAGGCCCA
* * *
25770032 ATTCACATTCATATGGCCCATTAGGCCCA
1 AATCACATTTATATGGCCCATCAGGCCCA
*
25770061 AATCACCTTTATATGGCCC
1 AATCACATTTATATGGCCC
25770080 GTTACGCCGA
Statistics
Matches: 41, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.27, C:0.31, G:0.13, T:0.29
Consensus pattern (29 bp):
AATCACATTTATATGGCCCATCAGGCCCA
Found at i:25770092 original size:29 final size:29
Alignment explanation
Indices: 25770010--25770102 Score: 107
Period size: 29 Copynumber: 3.2 Consensus size: 29
25770000 CCTAATCTCA
* * *
25770010 TTTATATGGCCCATCAGGCCCAATTCACA
1 TTTATATGGCCCATTAGGCCCAAATCACC
*
25770039 TTCATATGGCCCATTAGGCCCAAATCACC
1 TTTATATGGCCCATTAGGCCCAAATCACC
* * * *
25770068 TTTATATGGCCCGTTACGCCGAAATCATC
1 TTTATATGGCCCATTAGGCCCAAATCACC
25770097 -TTATAT
1 TTTATAT
25770103 TTATGCTCAC
Statistics
Matches: 55, Mismatches: 9, Indels: 1
0.85 0.14 0.02
Matches are distributed among these distances:
28 6 0.11
29 49 0.89
ACGTcount: A:0.27, C:0.29, G:0.14, T:0.30
Consensus pattern (29 bp):
TTTATATGGCCCATTAGGCCCAAATCACC
Found at i:25771957 original size:24 final size:24
Alignment explanation
Indices: 25771930--25772013 Score: 89
Period size: 24 Copynumber: 3.5 Consensus size: 24
25771920 TATGACGCCT
*
25771930 TTGTGGCTTATTCTGAAAGTGTCC
1 TTGTGGCATATTCTGAAAGTGTCC
* *
25771954 TTGTAGCATATTCTGAAAGTGTCT
1 TTGTGGCATATTCTGAAAGTGTCC
** * *
25771978 TTGTTACGTATTCTAAAAGTG-CC
1 TTGTGGCATATTCTGAAAGTGTCC
25772001 TTTGTGGCATATT
1 -TTGTGGCATATT
25772014 ATATAAATGC
Statistics
Matches: 48, Mismatches: 11, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
23 1 0.02
24 47 0.98
ACGTcount: A:0.21, C:0.14, G:0.21, T:0.43
Consensus pattern (24 bp):
TTGTGGCATATTCTGAAAGTGTCC
Found at i:25788854 original size:7 final size:7
Alignment explanation
Indices: 25788844--25788868 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
25788834 TTGAGGGGTG
25788844 TGGGGAT
1 TGGGGAT
25788851 TGGGGAT
1 TGGGGAT
25788858 TGGGGAT
1 TGGGGAT
25788865 TGGG
1 TGGG
25788869 TAGCCAAATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.12, C:0.00, G:0.60, T:0.28
Consensus pattern (7 bp):
TGGGGAT
Found at i:25791522 original size:27 final size:27
Alignment explanation
Indices: 25791435--25791524 Score: 85
Period size: 27 Copynumber: 3.3 Consensus size: 27
25791425 GGCAAAATGG
* * *
25791435 TAATTTTACCCCACAAGGGTATCT-CA
1 TAATTCTACCCTACAAGGGTATTTCCA
**
25791461 GTAATTCTACCCTAC-AGGGTTATTTCGG
1 -TAATTCTACCCTACAAGGG-TATTTCCA
* *
25791489 TATTTCTACCTTACAAGGGTATTTCCA
1 TAATTCTACCCTACAAGGGTATTTCCA
25791516 TAATTCTAC
1 TAATTCTAC
25791525 AACTTATCCA
Statistics
Matches: 50, Mismatches: 10, Indels: 6
0.76 0.15 0.09
Matches are distributed among these distances:
26 4 0.08
27 42 0.84
28 4 0.08
ACGTcount: A:0.27, C:0.23, G:0.13, T:0.37
Consensus pattern (27 bp):
TAATTCTACCCTACAAGGGTATTTCCA
Found at i:25798199 original size:27 final size:27
Alignment explanation
Indices: 25798151--25798203 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
25798141 GCGAAGCTGC
*
25798151 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGATA
*
25798178 CAGATATTGTGGC-AAGGCCACCAGAT
1 CAGATATTGTGACGAA-GCCACCAGAT
25798204 TGCTGCGAGG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 2 0.09
27 21 0.91
ACGTcount: A:0.34, C:0.21, G:0.25, T:0.21
Consensus pattern (27 bp):
CAGATATTGTGACGAAGCCACCAGATA
Found at i:25798827 original size:26 final size:27
Alignment explanation
Indices: 25798798--25798851 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
25798788 TCACACAAGT
* *
25798798 TAGTCATTT-ACGCTCGAGGGGCAAAA
1 TAGTCATTTAACACCCGAGGGGCAAAA
*
25798824 TAGTCATTTAACACCCTAGGGGCAAAA
1 TAGTCATTTAACACCCGAGGGGCAAAA
25798851 T
1 T
25798852 GGTAATTTTA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
26 9 0.38
27 15 0.62
ACGTcount: A:0.33, C:0.20, G:0.22, T:0.24
Consensus pattern (27 bp):
TAGTCATTTAACACCCGAGGGGCAAAA
Found at i:25798941 original size:27 final size:27
Alignment explanation
Indices: 25798852--25798942 Score: 110
Period size: 27 Copynumber: 3.4 Consensus size: 27
25798842 GGGGCAAAAT
* * *
25798852 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
25798879 GATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
25798906 AGTATTTCTACCCTACAAGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
25798933 GGTAATTCTA
1 GGTAATTCTA
25798943 TAACTTATCC
Statistics
Matches: 52, Mismatches: 12, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 52 1.00
ACGTcount: A:0.26, C:0.21, G:0.18, T:0.35
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:25799921 original size:27 final size:27
Alignment explanation
Indices: 25799864--25799921 Score: 62
Period size: 27 Copynumber: 2.1 Consensus size: 27
25799854 ACCCTTAATC
* * ** *
25799864 GATAAAATGACTATTATGCCCTTGTGT
1 GATAAAATGACTATTAGGCCCCTACGA
*
25799891 GATAAAATGACTGTTAGGCCCCTACGA
1 GATAAAATGACTATTAGGCCCCTACGA
25799918 GATA
1 GATA
25799922 TATGATTATA
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.33, C:0.17, G:0.21, T:0.29
Consensus pattern (27 bp):
GATAAAATGACTATTAGGCCCCTACGA
Found at i:25800560 original size:18 final size:19
Alignment explanation
Indices: 25800520--25800560 Score: 50
Period size: 19 Copynumber: 2.3 Consensus size: 19
25800510 AACATAGCCC
*
25800520 CTTT-GGATTTTATTTTTA
1 CTTTGGGATTTTAGTTTTA
*
25800538 ATTTGGGATTTTAGTTTT-
1 CTTTGGGATTTTAGTTTTA
25800556 CTTTG
1 CTTTG
25800561 ATTATAACTG
Statistics
Matches: 19, Mismatches: 3, Indels: 2
0.79 0.12 0.08
Matches are distributed among these distances:
18 7 0.37
19 12 0.63
ACGTcount: A:0.15, C:0.05, G:0.17, T:0.63
Consensus pattern (19 bp):
CTTTGGGATTTTAGTTTTA
Found at i:25802200 original size:23 final size:21
Alignment explanation
Indices: 25802171--25802276 Score: 95
Period size: 23 Copynumber: 4.7 Consensus size: 21
25802161 CTTACCAATT
*
25802171 TAGAGCTTACTGTTTCAGCTCA
1 TAGAGCTTACT-ATTCAGCTCA
* * *
25802193 TTGGAGCTTACCGATTCAGCTTGA
1 -TAGAGCTTA-CTATTCAGC-TCA
25802217 TAGAGCTTACTATTCAGCTCAA
1 TAGAGCTTACTATTCAGCTC-A
*
25802239 TAGAGCTTACCATTTTCAGCTCA
1 TAGAGCTTA-C-TATTCAGCTCA
25802262 GTAGAGCTTACTATT
1 -TAGAGCTTACTATT
25802277 TATTAGCTCG
Statistics
Matches: 68, Mismatches: 9, Indels: 13
0.76 0.10 0.14
Matches are distributed among these distances:
21 1 0.01
22 21 0.31
23 25 0.37
24 21 0.31
ACGTcount: A:0.25, C:0.22, G:0.18, T:0.35
Consensus pattern (21 bp):
TAGAGCTTACTATTCAGCTCA
Found at i:25802234 original size:22 final size:23
Alignment explanation
Indices: 25802196--25802276 Score: 85
Period size: 22 Copynumber: 3.6 Consensus size: 23
25802186 CAGCTCATTG
* *
25802196 GAGCTTACCGATTCAGCTTGATA
1 GAGCTTACCTATTCAGCTTAATA
*
25802219 GAGCTTA-CTATTCAGCTCAATA
1 GAGCTTACCTATTCAGCTTAATA
* * *
25802241 GAGCTTACCATTTTCAGCTCAGTA
1 GAGCTTACC-TATTCAGCTTAATA
25802265 GAGCTTA-CTATT
1 GAGCTTACCTATT
25802277 TATTAGCTCG
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
22 22 0.44
23 9 0.18
24 19 0.38
ACGTcount: A:0.27, C:0.22, G:0.17, T:0.33
Consensus pattern (23 bp):
GAGCTTACCTATTCAGCTTAATA
Found at i:25802257 original size:46 final size:45
Alignment explanation
Indices: 25802171--25802276 Score: 126
Period size: 46 Copynumber: 2.3 Consensus size: 45
25802161 CTTACCAATT
* * * *
25802171 TAGAGCTTACTGTTTCAGCTCATTGGAGCTTACCGATTCAGCT-TG
1 TAGAGCTTACT-ATTCAGCTCAATAGAGCTTACCGATTCAGCTCAG
25802216 ATAGAGCTTACTATTCAGCTCAATAGAGCTTACC-ATTTTCAGCTCAG
1 -TAGAGCTTACTATTCAGCTCAATAGAGCTTACCGA--TTCAGCTCAG
25802263 TAGAGCTTACTATT
1 TAGAGCTTACTATT
25802277 TATTAGCTCG
Statistics
Matches: 53, Mismatches: 4, Indels: 6
0.84 0.06 0.10
Matches are distributed among these distances:
44 1 0.02
45 19 0.36
46 32 0.60
47 1 0.02
ACGTcount: A:0.25, C:0.22, G:0.18, T:0.35
Consensus pattern (45 bp):
TAGAGCTTACTATTCAGCTCAATAGAGCTTACCGATTCAGCTCAG
Found at i:25802261 original size:24 final size:24
Alignment explanation
Indices: 25802171--25802277 Score: 91
Period size: 24 Copynumber: 4.6 Consensus size: 24
25802161 CTTACCAATT
*
25802171 TAGAGCTTA-C-TGTTTCAGCTCAT
1 TAGAGCTTACCAT-TTTCAGCTCAA
* **
25802194 TGGAGCTTACCGA--TTCAGCTTGA
1 TAGAGCTTACC-ATTTTCAGCTCAA
*
25802217 TAGAGCTTA-C-TATTCAGCTCAA
1 TAGAGCTTACCATTTTCAGCTCAA
*
25802239 TAGAGCTTACCATTTTCAGCTCAG
1 TAGAGCTTACCATTTTCAGCTCAA
*
25802263 TAGAGCTTACTATTT
1 TAGAGCTTACCATTT
25802278 ATTAGCTCGG
Statistics
Matches: 67, Mismatches: 10, Indels: 13
0.74 0.11 0.14
Matches are distributed among these distances:
22 18 0.27
23 24 0.36
24 25 0.37
ACGTcount: A:0.25, C:0.21, G:0.18, T:0.36
Consensus pattern (24 bp):
TAGAGCTTACCATTTTCAGCTCAA
Found at i:25803892 original size:48 final size:48
Alignment explanation
Indices: 25803829--25803924 Score: 174
Period size: 48 Copynumber: 2.0 Consensus size: 48
25803819 GATTACGGGT
*
25803829 TAGGGGTGTTACATTTTTTTGCATCAGAGCTAGGTTTAGCCGATTCTA
1 TAGGGGTGTTACATTTTTTTGCATCAGAGCCAGGTTTAGCCGATTCTA
*
25803877 TAGGGGTGTTACATTTTTTTGTATCAGAGCCAGGTTTAGCCGATTCTA
1 TAGGGGTGTTACATTTTTTTGCATCAGAGCCAGGTTTAGCCGATTCTA
25803925 GGACTAACGT
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 46 1.00
ACGTcount: A:0.21, C:0.15, G:0.25, T:0.40
Consensus pattern (48 bp):
TAGGGGTGTTACATTTTTTTGCATCAGAGCCAGGTTTAGCCGATTCTA
Found at i:25805917 original size:19 final size:19
Alignment explanation
Indices: 25805893--25805930 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
25805883 TGGTATTGAG
*
25805893 TTAGTATCGGGGACAACAC
1 TTAGTACCGGGGACAACAC
25805912 TTAGTACCGGGGACAACAC
1 TTAGTACCGGGGACAACAC
25805931 CAATAATGAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.32, C:0.24, G:0.26, T:0.18
Consensus pattern (19 bp):
TTAGTACCGGGGACAACAC
Found at i:25810414 original size:26 final size:26
Alignment explanation
Indices: 25810385--25810435 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
25810375 TTCAGTAGAC
25810385 TCAATAGGTAAATTCTTACTAGATAT
1 TCAATAGGTAAATTCTTACTAGATAT
25810411 TCAATAGGTAAATTCTTACTAGATA
1 TCAATAGGTAAATTCTTACTAGATA
25810436 CTAAATTTGT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.39, C:0.12, G:0.12, T:0.37
Consensus pattern (26 bp):
TCAATAGGTAAATTCTTACTAGATAT
Found at i:25814157 original size:51 final size:51
Alignment explanation
Indices: 25814078--25814201 Score: 212
Period size: 51 Copynumber: 2.4 Consensus size: 51
25814068 CTGATCACAT
* *
25814078 TTATCACTTGTCACTTGTCACTGTTCAGATAAGTGTAGCTAAAGCTACCAC
1 TTATCACTTGTCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCAACCAC
*
25814129 TTATCACTTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCAACCAC
1 TTATCACTTGTCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCAACCAC
*
25814180 TTATCACTTGTCACTTATCACT
1 TTATCACTTGTCACTTGTCACT
25814202 TGTCACTTGT
Statistics
Matches: 68, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
51 68 1.00
ACGTcount: A:0.29, C:0.24, G:0.13, T:0.34
Consensus pattern (51 bp):
TTATCACTTGTCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCAACCAC
Found at i:25814193 original size:7 final size:7
Alignment explanation
Indices: 25814177--25814215 Score: 60
Period size: 7 Copynumber: 5.6 Consensus size: 7
25814167 CTAAAGCAAC
*
25814177 CACTTAT
1 CACTTGT
25814184 CACTTGT
1 CACTTGT
*
25814191 CACTTAT
1 CACTTGT
25814198 CACTTGT
1 CACTTGT
25814205 CACTTGT
1 CACTTGT
25814212 CACT
1 CACT
25814216 GATAAGATAA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
7 29 1.00
ACGTcount: A:0.21, C:0.31, G:0.08, T:0.41
Consensus pattern (7 bp):
CACTTGT
Found at i:25814196 original size:14 final size:14
Alignment explanation
Indices: 25814177--25814215 Score: 69
Period size: 14 Copynumber: 2.8 Consensus size: 14
25814167 CTAAAGCAAC
25814177 CACTTATCACTTGT
1 CACTTATCACTTGT
25814191 CACTTATCACTTGT
1 CACTTATCACTTGT
*
25814205 CACTTGTCACT
1 CACTTATCACT
25814216 GATAAGATAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
14 24 1.00
ACGTcount: A:0.21, C:0.31, G:0.08, T:0.41
Consensus pattern (14 bp):
CACTTATCACTTGT
Found at i:25814202 original size:65 final size:65
Alignment explanation
Indices: 25814126--25814264 Score: 208
Period size: 65 Copynumber: 2.1 Consensus size: 65
25814116 CTAAAGCTAC
* *
25814126 CACTTATCACTTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAG-CAACCACTTATCACTTG
1 CACTTATCACTTATCACTTGTCACTGATAAGATAAGTGCAGCT-AAGCCAACCACTTATCACTTG
25814190 T
65 T
* * *
25814191 CACTTATCACTTGTCACTTGTCACTGATAAGATAAGTGCAGCTGAGCCTACCACTTATCACTTGT
1 CACTTATCACTTATCACTTGTCACTGATAAGATAAGTGCAGCTAAGCCAACCACTTATCACTTGT
*
25814256 CACTGATCA
1 CACTTATCA
25814265 GAAGTACTCA
Statistics
Matches: 67, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
64 2 0.03
65 65 0.97
ACGTcount: A:0.29, C:0.26, G:0.14, T:0.32
Consensus pattern (65 bp):
CACTTATCACTTATCACTTGTCACTGATAAGATAAGTGCAGCTAAGCCAACCACTTATCACTTGT
Found at i:25819023 original size:18 final size:18
Alignment explanation
Indices: 25819000--25819042 Score: 77
Period size: 18 Copynumber: 2.4 Consensus size: 18
25818990 GTTTATTTAT
25819000 ATAACAAAAAAATTTGAA
1 ATAACAAAAAAATTTGAA
25819018 ATAACAAAAAAATTTGAA
1 ATAACAAAAAAATTTGAA
*
25819036 ATTACAA
1 ATAACAA
25819043 CCATCTCATG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.65, C:0.07, G:0.05, T:0.23
Consensus pattern (18 bp):
ATAACAAAAAAATTTGAA
Found at i:25833132 original size:44 final size:42
Alignment explanation
Indices: 25833069--25833198 Score: 111
Period size: 44 Copynumber: 3.0 Consensus size: 42
25833059 GTTGGTATTG
* *
25833069 ATCTGAATTATCGTGTAAGACCGTGTCTGTGACACAGGCATCGA
1 ATCTG-ATT-TCGTGTAAGACCATGTCTGAGACACAGGCATCGA
* *
25833113 AT-TGAAATTTACGTGTAAGACCATGTCCGAGACATCA-GCATCGT
1 ATCTG--ATTT-CGTGTAAGACCATGTCTGAGACA-CAGGCATCGA
* * * * *
25833157 ATCTGATTTCATATAAGACCCTGTCTGGGACAGAGGCATCGA
1 ATCTGATTTCGTGTAAGACCATGTCTGAGACACAGGCATCGA
25833199 TACTGAATTA
Statistics
Matches: 70, Mismatches: 11, Indels: 12
0.75 0.12 0.13
Matches are distributed among these distances:
41 1 0.01
42 24 0.34
43 7 0.10
44 34 0.49
45 4 0.06
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (42 bp):
ATCTGATTTCGTGTAAGACCATGTCTGAGACACAGGCATCGA
Found at i:25839529 original size:35 final size:36
Alignment explanation
Indices: 25839490--25839557 Score: 93
Period size: 36 Copynumber: 1.9 Consensus size: 36
25839480 TTATAATCAT
* *
25839490 TGTCATATGGTAAGAA-AACATACCCACATATTTAC
1 TGTCACATGGCAAGAATAACATACCCACATATTTAC
* *
25839525 TGTCACATGGCAATAATAACATACCCATATATT
1 TGTCACATGGCAAGAATAACATACCCACATATT
25839558 CTCTTTCACA
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
35 13 0.46
36 15 0.54
ACGTcount: A:0.40, C:0.21, G:0.10, T:0.29
Consensus pattern (36 bp):
TGTCACATGGCAAGAATAACATACCCACATATTTAC
Found at i:25841581 original size:29 final size:29
Alignment explanation
Indices: 25841539--25841713 Score: 244
Period size: 29 Copynumber: 6.0 Consensus size: 29
25841529 TGACGCCCAC
25841539 CGAATATGAAAAGGGATGGTTTCGACCAT
1 CGAATATGAAAAGGGATGGTTTCGACCAT
*
25841568 CGAATATGAAAAGGGATGGTGAT-GACCAT
1 CGAATATGAAAAGGGATGGT-TTCGACCAT
** * *
25841597 TAAATATAAAAAAGGATGGTTTCGACCAT
1 CGAATATGAAAAGGGATGGTTTCGACCAT
* *
25841626 CGAATATGCAAAGGGATGGTTTTGACCAT
1 CGAATATGAAAAGGGATGGTTTCGACCAT
* **
25841655 TGAATATGAAAAGGGATGGTGACGACCAT
1 CGAATATGAAAAGGGATGGTTTCGACCAT
25841684 CGAATATGAAAAGGGATGGTTTCGACCAT
1 CGAATATGAAAAGGGATGGTTTCGACCAT
25841713 C
1 C
25841714 ATTTAGCACA
Statistics
Matches: 124, Mismatches: 20, Indels: 4
0.84 0.14 0.03
Matches are distributed among these distances:
28 1 0.01
29 122 0.98
30 1 0.01
ACGTcount: A:0.37, C:0.13, G:0.27, T:0.24
Consensus pattern (29 bp):
CGAATATGAAAAGGGATGGTTTCGACCAT
Found at i:25841690 original size:87 final size:87
Alignment explanation
Indices: 25841539--25841713 Score: 278
Period size: 87 Copynumber: 2.0 Consensus size: 87
25841529 TGACGCCCAC
* *
25841539 CGAATATGAAAAGGGATGGTTTCGACCATCGAATATGAAAAGGGATGGTGATGACCATTAAATAT
1 CGAATATGAAAAGGGATGGTTTCGACCATCGAATATGAAAAGGGATGGTGACGACCATCAAATAT
25841604 AAAAAAGGATGGTTTCGACCAT
66 AAAAAAGGATGGTTTCGACCAT
* * * *
25841626 CGAATATGCAAAGGGATGGTTTTGACCATTGAATATGAAAAGGGATGGTGACGACCATCGAATAT
1 CGAATATGAAAAGGGATGGTTTCGACCATCGAATATGAAAAGGGATGGTGACGACCATCAAATAT
* *
25841691 GAAAAGGGATGGTTTCGACCAT
66 AAAAAAGGATGGTTTCGACCAT
25841713 C
1 C
25841714 ATTTAGCACA
Statistics
Matches: 80, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
87 80 1.00
ACGTcount: A:0.37, C:0.13, G:0.27, T:0.24
Consensus pattern (87 bp):
CGAATATGAAAAGGGATGGTTTCGACCATCGAATATGAAAAGGGATGGTGACGACCATCAAATAT
AAAAAAGGATGGTTTCGACCAT
Found at i:25847546 original size:41 final size:41
Alignment explanation
Indices: 25847489--25847635 Score: 206
Period size: 41 Copynumber: 3.6 Consensus size: 41
25847479 GGGTTTAAAA
25847489 CCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCATAAT
1 CCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCATAAT
*
25847530 CCGAGCTTGGTCTCGAAGGGATTTTGAGCCAGTGTCATAA-
1 CCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCATAAT
* * * * * * * *
25847570 CCGAACCTAGTTTCGAAGGGCCTTCGGGCCAATGTCATAAT
1 CCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCATAAT
25847611 CCGAGCTTGGTCTCGAAGGGCTTTT
1 CCGAGCTTGGTCTCGAAGGGCTTTT
25847636 TGAGTCAGCG
Statistics
Matches: 89, Mismatches: 16, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
40 31 0.35
41 58 0.65
ACGTcount: A:0.20, C:0.23, G:0.29, T:0.28
Consensus pattern (41 bp):
CCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCATAAT
Found at i:25858077 original size:12 final size:11
Alignment explanation
Indices: 25858051--25858076 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
25858041 AGAAGAGAAT
25858051 AAAATACAAAA
1 AAAATACAAAA
25858062 AAAATACAAAA
1 AAAATACAAAA
25858073 AAAA
1 AAAA
25858077 AACACAAAGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.85, C:0.08, G:0.00, T:0.08
Consensus pattern (11 bp):
AAAATACAAAA
Found at i:25861823 original size:29 final size:27
Alignment explanation
Indices: 25861743--25861823 Score: 81
Period size: 29 Copynumber: 2.8 Consensus size: 27
25861733 TTTGAAGTAT
25861743 AATCAAAGTTTCAATGTATAATTACATCA
1 AATCAAAG-TTC-ATGTATAATTACATCA
* * *
25861772 AATTAAAGCTCGTGTATCAAATTACAGGTCA
1 AATCAAAGTTCATGTAT--AATTACA--TCA
25861803 AATCAAAGTTCATGTATAATT
1 AATCAAAGTTCATGTATAATT
25861824 TTAATATTTA
Statistics
Matches: 42, Mismatches: 6, Indels: 8
0.75 0.11 0.14
Matches are distributed among these distances:
27 5 0.12
28 2 0.05
29 18 0.43
31 17 0.40
ACGTcount: A:0.42, C:0.14, G:0.11, T:0.33
Consensus pattern (27 bp):
AATCAAAGTTCATGTATAATTACATCA
Found at i:25875223 original size:92 final size:92
Alignment explanation
Indices: 25875066--25875251 Score: 372
Period size: 92 Copynumber: 2.0 Consensus size: 92
25875056 AACAATTCAT
25875066 CCGATGCTGCTTCATTTGTCCATATCAAGACCTTTGATCCCCGCAGTAGTAACAGCCAATCAATC
1 CCGATGCTGCTTCATTTGTCCATATCAAGACCTTTGATCCCCGCAGTAGTAACAGCCAATCAATC
25875131 GATGCTACTGCATCTCAATCAGGTCTC
66 GATGCTACTGCATCTCAATCAGGTCTC
25875158 CCGATGCTGCTTCATTTGTCCATATCAAGACCTTTGATCCCCGCAGTAGTAACAGCCAATCAATC
1 CCGATGCTGCTTCATTTGTCCATATCAAGACCTTTGATCCCCGCAGTAGTAACAGCCAATCAATC
25875223 GATGCTACTGCATCTCAATCAGGTCTC
66 GATGCTACTGCATCTCAATCAGGTCTC
25875250 CC
1 CC
25875252 TCTGGAAAAT
Statistics
Matches: 94, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
92 94 1.00
ACGTcount: A:0.25, C:0.31, G:0.16, T:0.28
Consensus pattern (92 bp):
CCGATGCTGCTTCATTTGTCCATATCAAGACCTTTGATCCCCGCAGTAGTAACAGCCAATCAATC
GATGCTACTGCATCTCAATCAGGTCTC
Found at i:25882531 original size:27 final size:27
Alignment explanation
Indices: 25882500--25882551 Score: 95
Period size: 27 Copynumber: 1.9 Consensus size: 27
25882490 TTGGATTTTT
25882500 TTTTATTTGGGCTGGTTTTAGGTTTGG
1 TTTTATTTGGGCTGGTTTTAGGTTTGG
*
25882527 TTTTATTTGGGCTGGTTTTGGGTTT
1 TTTTATTTGGGCTGGTTTTAGGTTT
25882552 ATTTATGTGA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.06, C:0.04, G:0.33, T:0.58
Consensus pattern (27 bp):
TTTTATTTGGGCTGGTTTTAGGTTTGG
Found at i:25882544 original size:15 final size:15
Alignment explanation
Indices: 25882500--25882545 Score: 53
Period size: 15 Copynumber: 3.3 Consensus size: 15
25882490 TTGGATTTTT
25882500 TTTTATTTGGGCTGG
1 TTTTATTTGGGCTGG
**
25882515 TTTTA---GGTTTGG
1 TTTTATTTGGGCTGG
25882527 TTTTATTTGGGCTGG
1 TTTTATTTGGGCTGG
25882542 TTTT
1 TTTT
25882546 GGGTTTATTT
Statistics
Matches: 24, Mismatches: 4, Indels: 6
0.71 0.12 0.18
Matches are distributed among these distances:
12 10 0.42
15 14 0.58
ACGTcount: A:0.07, C:0.04, G:0.30, T:0.59
Consensus pattern (15 bp):
TTTTATTTGGGCTGG
Found at i:25884017 original size:93 final size:93
Alignment explanation
Indices: 25883904--25884075 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
25883894 CGCCCATAAG
* *
25883904 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
25883969 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
25883997 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
25884062 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
25884076 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:25884072 original size:46 final size:46
Alignment explanation
Indices: 25883897--25884072 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
25883887 TATAACCCGC
* * *
25883897 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
25883943 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
25883993 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
25884036 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
25884073 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:25891590 original size:93 final size:93
Alignment explanation
Indices: 25891477--25891648 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
25891467 CGCCCATAAG
* *
25891477 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
25891542 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
25891570 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
25891635 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
25891649 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:25891645 original size:46 final size:46
Alignment explanation
Indices: 25891470--25891645 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
25891460 TGTAACCCGC
* * *
25891470 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
25891516 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
25891566 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
25891609 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
25891646 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:25893096 original size:16 final size:18
Alignment explanation
Indices: 25893066--25893101 Score: 58
Period size: 16 Copynumber: 2.1 Consensus size: 18
25893056 TTTTCAACCT
25893066 AAATTAAACTAAAATTAA
1 AAATTAAACTAAAATTAA
25893084 AAATTAAA-T-AAATTAA
1 AAATTAAACTAAAATTAA
25893100 AA
1 AA
25893102 TAAGTATGGG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 9 0.50
17 1 0.06
18 8 0.44
ACGTcount: A:0.69, C:0.03, G:0.00, T:0.28
Consensus pattern (18 bp):
AAATTAAACTAAAATTAA
Found at i:25901700 original size:25 final size:25
Alignment explanation
Indices: 25901672--25901748 Score: 81
Period size: 25 Copynumber: 3.2 Consensus size: 25
25901662 TGATGAATGT
25901672 GAATGTGTATATATGTGATAAGGCC
1 GAATGTGTATATATGTGATAAGGCC
** * *
25901697 GAATG-G--CCTATGTGATGAATG-T
1 GAATGTGTATATATGTGAT-AAGGCC
25901719 GAATGTGTATATATGTGATAAGGCC
1 GAATGTGTATATATGTGATAAGGCC
25901744 GAATG
1 GAATG
25901749 GCCAATGTGA
Statistics
Matches: 39, Mismatches: 8, Indels: 10
0.68 0.14 0.18
Matches are distributed among these distances:
22 13 0.33
23 4 0.10
24 4 0.10
25 18 0.46
ACGTcount: A:0.31, C:0.08, G:0.30, T:0.31
Consensus pattern (25 bp):
GAATGTGTATATATGTGATAAGGCC
Found at i:25901711 original size:22 final size:22
Alignment explanation
Indices: 25901683--25901759 Score: 66
Period size: 22 Copynumber: 3.4 Consensus size: 22
25901673 AATGTGTATA
25901683 TATGTGATAAGGCCGAATGGCC
1 TATGTGATAAGGCCGAATGGCC
* * **
25901705 TATGTGATGAATG-TGAATGTGTATA
1 TATGTGAT-AAGGCCGAATG-G--CC
25901730 TATGTGATAAGGCCGAATGGCC
1 TATGTGATAAGGCCGAATGGCC
*
25901752 AATGTGAT
1 TATGTGAT
25901760 GAATGTGAGC
Statistics
Matches: 41, Mismatches: 9, Indels: 10
0.68 0.15 0.17
Matches are distributed among these distances:
22 20 0.49
23 4 0.10
24 4 0.10
25 13 0.32
ACGTcount: A:0.30, C:0.10, G:0.30, T:0.30
Consensus pattern (22 bp):
TATGTGATAAGGCCGAATGGCC
Found at i:25901712 original size:47 final size:47
Alignment explanation
Indices: 25901659--25902079 Score: 608
Period size: 47 Copynumber: 9.0 Consensus size: 47
25901649 TTAGGATTTT
** * *
25901659 ATGTGATGAATGTGAATGTGTATATATGTGATAAGGCCGAATGGCCT
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
** *
25901706 ATGTGATGAATGTGAATGTGTATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
25901753 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
25901800 ATGTGGTGAATATGAACATGTATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
25901847 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * *
25901894 ATGTGGTGAATATGAACATGCATATATGTGATGAGGCCGAATGACCT
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
25901941 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCAAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
25901988 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * *
25902035 ATGTGGTGAATATGAACATGCATATATGTGGTAAAGCCGAATGGC
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGC
25902080 TAGTGTGAAA
Statistics
Matches: 336, Mismatches: 38, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 336 1.00
ACGTcount: A:0.32, C:0.11, G:0.29, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:25902292 original size:37 final size:37
Alignment explanation
Indices: 25902242--25902393 Score: 250
Period size: 37 Copynumber: 4.1 Consensus size: 37
25902232 GGAAATATAT
* * *
25902242 TCCGGGTGAGACCCGATGACTACGTGTGGAGAGTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
25902279 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
25902316 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* * *
25902353 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTTCG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
25902390 TCCG
1 TCCG
25902394 AGCTAAAGGT
Statistics
Matches: 109, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 109 1.00
ACGTcount: A:0.21, C:0.20, G:0.33, T:0.26
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:25903890 original size:20 final size:20
Alignment explanation
Indices: 25903865--25903912 Score: 96
Period size: 20 Copynumber: 2.4 Consensus size: 20
25903855 CTGCGGGCAT
25903865 GGGCGTGTCCCAAGCCACAC
1 GGGCGTGTCCCAAGCCACAC
25903885 GGGCGTGTCCCAAGCCACAC
1 GGGCGTGTCCCAAGCCACAC
25903905 GGGCGTGT
1 GGGCGTGT
25903913 GTGATCACAC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.17, C:0.35, G:0.35, T:0.12
Consensus pattern (20 bp):
GGGCGTGTCCCAAGCCACAC
Found at i:25916405 original size:43 final size:43
Alignment explanation
Indices: 25916339--25916483 Score: 131
Period size: 42 Copynumber: 3.4 Consensus size: 43
25916329 AGCTCATACA
*
25916339 ATGCCAACT-TCCCAGAC-GTGGTCTTACATGTAATCAAACATCG
1 ATGCCAACTGTCCCAGACAG-GGTCTTACACGTAATCAAA-ATCG
* *
25916382 ATGCC-ACTGTCCCAGACAGGGTCTTACACGAAAT-AAAATATG
1 ATGCCAACTGTCCCAGACAGGGTCTTACACGTAATCAAAAT-CG
* * * *
25916424 ATGCCGA-TGTCTCAGACATGGTCTTACACGTAAATCATAAGTCG
1 ATGCCAACTGTCCCAGACAGGGTCTTACACGT-AATCA-AAATCG
*
25916468 ATGCCAAC-GACCCAGA
1 ATGCCAACTGTCCCAGA
25916484 TGTTGTCTAA
Statistics
Matches: 83, Mismatches: 11, Indels: 15
0.76 0.10 0.14
Matches are distributed among these distances:
41 2 0.02
42 33 0.40
43 30 0.36
44 15 0.18
45 3 0.04
ACGTcount: A:0.32, C:0.26, G:0.19, T:0.23
Consensus pattern (43 bp):
ATGCCAACTGTCCCAGACAGGGTCTTACACGTAATCAAAATCG
Found at i:25916440 original size:42 final size:43
Alignment explanation
Indices: 25916339--25916458 Score: 122
Period size: 43 Copynumber: 2.8 Consensus size: 43
25916329 AGCTCATACA
* * *
25916339 ATGCCAACT-TCCCAGAC-GTGGTCTTACATGTAATCAAACATCG
1 ATGCC-ACTGTCCCAGACAG-GGTCTTACACGAAATAAAACATCG
*
25916382 ATGCCACTGTCCCAGACAGGGTCTTACACGAAATAAAATAT-G
1 ATGCCACTGTCCCAGACAGGGTCTTACACGAAATAAAACATCG
* *
25916424 ATGCCGA-TGTCTCAGACATGGTCTTACACGTAAAT
1 ATGCC-ACTGTCCCAGACAGGGTCTTACACG-AAAT
25916459 CATAAGTCGA
Statistics
Matches: 67, Mismatches: 6, Indels: 8
0.83 0.07 0.10
Matches are distributed among these distances:
42 30 0.45
43 36 0.54
44 1 0.01
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.25
Consensus pattern (43 bp):
ATGCCACTGTCCCAGACAGGGTCTTACACGAAATAAAACATCG
Found at i:25917042 original size:27 final size:28
Alignment explanation
Indices: 25916994--25917047 Score: 67
Period size: 28 Copynumber: 2.0 Consensus size: 28
25916984 ATTACATTTA
* *
25916994 TTTCACATTTAGTCCCTCAATTTCTCAT
1 TTTCACATTTAGTCCCTAAATTACTCAT
25917022 TTTCACAATTTAG-CCC-AAATTACTCA
1 TTTCAC-ATTTAGTCCCTAAATTACTCA
25917048 AATTCATCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
27 8 0.35
28 9 0.39
29 6 0.26
ACGTcount: A:0.28, C:0.28, G:0.04, T:0.41
Consensus pattern (28 bp):
TTTCACATTTAGTCCCTAAATTACTCAT
Found at i:25918403 original size:16 final size:17
Alignment explanation
Indices: 25918382--25918419 Score: 62
Period size: 16 Copynumber: 2.4 Consensus size: 17
25918372 ATGAATCGGC
25918382 AAAAGCCA-AAATGCCG
1 AAAAGCCAGAAATGCCG
25918398 AAAAG-CAGAAATGCCG
1 AAAAGCCAGAAATGCCG
25918414 AAAAGC
1 AAAAGC
25918420 TGAAAGTTTG
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
15 2 0.10
16 18 0.90
ACGTcount: A:0.53, C:0.21, G:0.21, T:0.05
Consensus pattern (17 bp):
AAAAGCCAGAAATGCCG
Found at i:25918424 original size:16 final size:16
Alignment explanation
Indices: 25918390--25918424 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
25918380 GCAAAAGCCA
25918390 AAATGCCGAAAAGCAG
1 AAATGCCGAAAAGCAG
*
25918406 AAATGCCGAAAAGCTG
1 AAATGCCGAAAAGCAG
25918422 AAA
1 AAA
25918425 GTTTGGCTAC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.51, C:0.17, G:0.23, T:0.09
Consensus pattern (16 bp):
AAATGCCGAAAAGCAG
Found at i:25918745 original size:28 final size:29
Alignment explanation
Indices: 25918634--25918748 Score: 128
Period size: 29 Copynumber: 4.0 Consensus size: 29
25918624 GTGAGCATGA
* *
25918634 ATATGAATGTGA-CTGGGCCTAACGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
**
25918662 ATACAAATGTGATTTGGGCCTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
*
25918691 ATAT-ACAGGTGATTTGGGCCTAATGGGCC
1 ATATGA-ATGTGATTTGGGCCTAATGGGCC
* * *
25918720 ATATGAATATGA-ATGGGCTTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
25918748 A
1 A
25918749 AATACAGGTA
Statistics
Matches: 74, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
28 26 0.35
29 47 0.64
30 1 0.01
ACGTcount: A:0.28, C:0.17, G:0.30, T:0.26
Consensus pattern (29 bp):
ATATGAATGTGATTTGGGCCTAATGGGCC
Found at i:25918754 original size:57 final size:58
Alignment explanation
Indices: 25918647--25918757 Score: 152
Period size: 57 Copynumber: 1.9 Consensus size: 58
25918637 TGAATGTGAC
* * *
25918647 TGGGCCTAACGGGCCATACAAATGTGATTTGGGCCTAATGGGCCATATACAGGTGATT
1 TGGGCCTAACGGGCCATACAAATATGATATGGGCCTAATGGGCCAAATACAGGTGATT
* ** *
25918705 TGGGCCTAATGGGCCATATGAATATGA-ATGGGCTTAATGGGCCAAATACAGGT
1 TGGGCCTAACGGGCCATACAAATATGATATGGGCCTAATGGGCCAAATACAGGT
25918758 ATGTGAATTT
Statistics
Matches: 46, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
57 23 0.50
58 23 0.50
ACGTcount: A:0.28, C:0.17, G:0.30, T:0.25
Consensus pattern (58 bp):
TGGGCCTAACGGGCCATACAAATATGATATGGGCCTAATGGGCCAAATACAGGTGATT
Found at i:25923266 original size:30 final size:30
Alignment explanation
Indices: 25923209--25923266 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
25923199 CATGACCATG
* * *
25923209 ACACATGGGCGTGTGGCTTGCCTGTGTGTC
1 ACACACGGGCGTGTGGCTTACCCGTGTGTC
*
25923239 ACACACGGGCGTGTGGTTTACCCGTGTG
1 ACACACGGGCGTGTGGCTTACCCGTGTG
25923267 AAAATGCCTA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.12, C:0.24, G:0.36, T:0.28
Consensus pattern (30 bp):
ACACACGGGCGTGTGGCTTACCCGTGTGTC
Found at i:25925117 original size:6 final size:6
Alignment explanation
Indices: 25925095--25925155 Score: 74
Period size: 6 Copynumber: 10.7 Consensus size: 6
25925085 ATAAGTCTTC
* **
25925095 AAAAAT AAATA- AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AGTAAT
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT
25925142 -AAAAT -AAAAT AAAA
1 AAAAAT AAAAAT AAAA
25925156 GGACTCAAAG
Statistics
Matches: 47, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
5 12 0.26
6 35 0.74
ACGTcount: A:0.80, C:0.00, G:0.02, T:0.18
Consensus pattern (6 bp):
AAAAAT
Found at i:25930415 original size:40 final size:40
Alignment explanation
Indices: 25930352--25930615 Score: 274
Period size: 40 Copynumber: 6.6 Consensus size: 40
25930342 GATATTCGGA
* *
25930352 TAATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGAC
1 TAATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT-AC
* * *
25930393 TAAT-TCTGGGCTAAGTCTCGAAGGCAATTGTGCGAGTTAC
1 TAATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TAC
*
25930433 T-ATATCCGGGCTAAGTCCCGAAGGCAATTGTGCGAGCTAC
1 TAATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TAC
* *
25930473 -AATAACCGGGTTAAGTCCCGAAGGCATTTGTGCGAGCTAC
1 TAATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TAC
* * *
25930513 -AATAACCGGGTTAAGTCCCGAAGGCATTTGTGAGAGTTAC
1 TAATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TAC
* *
25930553 T-ATGAT-CGGGCTAAGTGCCGAAGGCATTTGGGCGAGTAGC
1 TAAT-ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTA-C
**
25930593 T-ATATCC-GGCTAAACCCCGAAGG
1 TAATATCCGGGCTAAGTCCCGAAGG
25930616 TACTTGGTTG
Statistics
Matches: 195, Mismatches: 21, Indels: 16
0.84 0.09 0.07
Matches are distributed among these distances:
39 19 0.10
40 170 0.87
41 6 0.03
ACGTcount: A:0.27, C:0.21, G:0.28, T:0.24
Consensus pattern (40 bp):
TAATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAC
Found at i:25930566 original size:120 final size:120
Alignment explanation
Indices: 25930353--25930588 Score: 325
Period size: 120 Copynumber: 2.0 Consensus size: 120
25930343 ATATTCGGAT
* * * *
25930353 AATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCTGGGCTAAGTCTCGAAGGC
1 AATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATACCGGGCTAAGTCCCGAAGGC
* *
25930418 AATTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCAATTGTGCGAGCTAC
66 AATTGTGAGAGTTACTATATCCGGGCTAAGTCCCGAAGGCAATTGGGCGAGCTAC
* *
25930473 AATAACCGGGTTAAGTCCCGAAGGCATTTGTGCGAGCT-AC-AATAACCGGGTTAAGTCCCGAAG
1 AATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TGACTAAT-ACCGGGCTAAGTCCCGAAG
* * *
25930536 GCATTTGTGAGAGTTACTATGAT-CGGGCTAAGTGCCGAAGGCATTTGGGCGAG
64 GCAATTGTGAGAGTTACTAT-ATCCGGGCTAAGTCCCGAAGGCAATTGGGCGAG
25930589 TAGCTATATC
Statistics
Matches: 102, Mismatches: 11, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
119 3 0.03
120 96 0.94
121 3 0.03
ACGTcount: A:0.26, C:0.20, G:0.29, T:0.24
Consensus pattern (120 bp):
AATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATACCGGGCTAAGTCCCGAAGGC
AATTGTGAGAGTTACTATATCCGGGCTAAGTCCCGAAGGCAATTGGGCGAGCTAC
Found at i:25948254 original size:40 final size:39
Alignment explanation
Indices: 25948170--25948354 Score: 203
Period size: 40 Copynumber: 4.6 Consensus size: 39
25948160 TCGAATGATG
* * * *
25948170 TCCGGGCTAAGTCTCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTC-CGAAGGCATTTGTGC-GAGTTACTAAA
* *
25948210 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAT
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
* *
25948250 TCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
*
25948289 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTA-AA
* *
25948330 -CTGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGT-CCGAAGGCATTTG
25948355 AACGAGTAGC
Statistics
Matches: 125, Mismatches: 16, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
39 35 0.28
40 79 0.63
41 11 0.09
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:25948376 original size:79 final size:79
Alignment explanation
Indices: 25948223--25948387 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
25948213 GGACTAAGAT
* **
25948223 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
*
25948288 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* * *
25948302 CCGAAGGCATTTGTGCGAGTTACT-ATAACTGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
* *
25948365 TAGATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
25948381 CCGAAGG
1 CCGAAGG
25948388 TACGTGATTC
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.65
80 24 0.32
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:25956424 original size:40 final size:40
Alignment explanation
Indices: 25956334--25956518 Score: 209
Period size: 40 Copynumber: 4.7 Consensus size: 40
25956324 TCGAATGATG
* * *
25956334 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
* *
25956373 ATCTGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
25956414 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
*
25956453 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
25956492 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
25956519 AACGTGTAGC
Statistics
Matches: 124, Mismatches: 15, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
39 36 0.29
40 78 0.63
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:25956551 original size:79 final size:79
Alignment explanation
Indices: 25956387--25956543 Score: 185
Period size: 79 Copynumber: 2.0 Consensus size: 79
25956377 GGACTAAGAT
* **
25956387 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
* *
25956452 ATCCGGGTTAAGTC
66 ATCCGGGTAAAATC
* * *
25956466 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGTG-TAGC
1 CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
*
25956529 TATATCC-GGTAAAAT
63 TAAATCCGGGTAAAAT
25956544 TTCGAAGGTA
Statistics
Matches: 66, Mismatches: 9, Indels: 6
0.81 0.11 0.07
Matches are distributed among these distances:
78 2 0.03
79 41 0.62
80 23 0.35
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTAAAATC
Found at i:25958370 original size:20 final size:20
Alignment explanation
Indices: 25958347--25958400 Score: 74
Period size: 20 Copynumber: 2.7 Consensus size: 20
25958337 CGTAACATAA
25958347 GCACCGAAGTGCAAACAAAG
1 GCACCGAAGTGCAAACAAAG
* *
25958367 GCACC-AGAGTACAAACAGAG
1 GCACCGA-AGTGCAAACAAAG
25958387 GCACCGAAGTGCAA
1 GCACCGAAGTGCAA
25958401 TCCCATACAA
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
19 1 0.03
20 27 0.93
21 1 0.03
ACGTcount: A:0.43, C:0.26, G:0.26, T:0.06
Consensus pattern (20 bp):
GCACCGAAGTGCAAACAAAG
Found at i:25959890 original size:27 final size:27
Alignment explanation
Indices: 25959860--25959964 Score: 120
Period size: 27 Copynumber: 3.9 Consensus size: 27
25959850 CTCATATCTG
* *
25959860 TAGGCTAGTATTACTGAAATACCCCTA
1 TAGGGTAGAATTACTGAAATACCCCTA
* *
25959887 TAGGGTAGAATTACTAAAATGCCCCTA
1 TAGGGTAGAATTACTGAAATACCCCTA
* * * * *
25959914 TAAGATAGAATTATTGAAATGCCCCTG
1 TAGGGTAGAATTACTGAAATACCCCTA
*
25959941 TAGGGTAAAATTACTGAAATACCC
1 TAGGGTAGAATTACTGAAATACCC
25959965 TTGTTTTATA
Statistics
Matches: 64, Mismatches: 14, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 64 1.00
ACGTcount: A:0.37, C:0.18, G:0.17, T:0.28
Consensus pattern (27 bp):
TAGGGTAGAATTACTGAAATACCCCTA
Found at i:25959976 original size:27 final size:27
Alignment explanation
Indices: 25959946--25960237 Score: 198
Period size: 27 Copynumber: 10.8 Consensus size: 27
25959936 CCCTGTAGGG
*
25959946 TAAAATTACTGAAATACCCTTGTTTTA
1 TAAAATTACTGAAATACCCTTGATTTA
* *
25959973 TAAAATTACTG-AATACCTTTGGTTTA
1 TAAAATTACTGAAATACCCTTGATTTA
* **
25959999 CAAAATTACCAAAATACCCTTGA-TTA
1 TAAAATTACTGAAATACCCTTGATTTA
* ** * *
25960025 GAAAAATTACCAAAATACCCCTGATTTG
1 -TAAAATTACTGAAATACCCTTGATTTA
* * *
25960053 TGAAATTACTGAAATACCCTCGATTTG
1 TAAAATTACTGAAATACCCTTGATTTA
** *
25960080 TAAAATTACCAAAATA-CCTCTGATTTG
1 TAAAATTACTGAAATACCCT-TGATTTA
* * * *
25960107 GAAAATTACCGAAATACCATTGATTTG
1 TAAAATTACTGAAATACCCTTGATTTA
* * *
25960134 GAAAATTA-TAGAAATACCCCTAATTTA
1 TAAAATTACT-GAAATACCCTTGATTTA
* *** *
25960161 AAAAATTAAAAAAATACCATTGACTTT-
1 TAAAATTACTGAAATACCCTTGA-TTTA
*
25960188 TAAAAATTACTGAAATACCCTTGGTTTA
1 T-AAAATTACTGAAATACCCTTGATTTA
* * * *
25960216 TAGATTTACTAAAACACCCTTG
1 TAAAATTACTGAAATACCCTTG
25960238 TAGGGTGAAA
Statistics
Matches: 211, Mismatches: 44, Indels: 20
0.77 0.16 0.07
Matches are distributed among these distances:
26 27 0.13
27 159 0.75
28 25 0.12
ACGTcount: A:0.41, C:0.17, G:0.09, T:0.33
Consensus pattern (27 bp):
TAAAATTACTGAAATACCCTTGATTTA
Found at i:25960104 original size:81 final size:81
Alignment explanation
Indices: 25959947--25960210 Score: 250
Period size: 81 Copynumber: 3.3 Consensus size: 81
25959937 CCTGTAGGGT
* * * * * * *
25959947 AAAATTACTGAAATACCCTTGTTTTATAAAATTACTG-AATACCTTTGGTTTACAAAATTACCAA
1 AAAATTACCGAAATACCCTTGATTTGTGAAATTACTGAAATACCCTCGATTTACAAAATTACCAA
25960011 AATACCCTTGATTAGA
66 AATACCCTTGATTAGA
* * **
25960027 AAAATTACCAAAATACCCCTGATTTGTGAAATTACTGAAATACCCTCGATTTGTAAAATTACCAA
1 AAAATTACCGAAATACCCTTGATTTGTGAAATTACTGAAATACCCTCGATTTACAAAATTACCAA
* *
25960092 AATA-CCTCTGATTTGG
66 AATACCCT-TGATTAGA
* * * *
25960108 AAAATTACCGAAATACCATTGATTTG-GAAAATTA-TAGAAATACCC-CTAATTTAAAAAATTAA
1 AAAATTACCGAAATACCCTTGATTTGTG-AAATTACT-GAAATACCCTC-GATTTACAAAATTAC
* * **
25960170 AAAAATACCATTGACTTTTA
63 CAAAATACCCTTGA-TTAGA
*
25960190 AAAATTACTGAAATACCCTTG
1 AAAATTACCGAAATACCCTTG
25960211 GTTTATAGAT
Statistics
Matches: 151, Mismatches: 26, Indels: 12
0.80 0.14 0.06
Matches are distributed among these distances:
80 37 0.25
81 90 0.60
82 24 0.16
ACGTcount: A:0.42, C:0.17, G:0.09, T:0.32
Consensus pattern (81 bp):
AAAATTACCGAAATACCCTTGATTTGTGAAATTACTGAAATACCCTCGATTTACAAAATTACCAA
AATACCCTTGATTAGA
Found at i:25960729 original size:25 final size:25
Alignment explanation
Indices: 25960656--25960723 Score: 91
Period size: 25 Copynumber: 2.7 Consensus size: 25
25960646 CCAATTATTC
*
25960656 TGTTATCGATGGCTTTGTACCGATA
1 TGTTATCGATGGCTTTATACCGATA
* * * *
25960681 TGATATTGATGGCTATATACCGATT
1 TGTTATCGATGGCTTTATACCGATA
25960706 TGTTATCGATGGCTTTAT
1 TGTTATCGATGGCTTTAT
25960724 GTCGATCGTA
Statistics
Matches: 35, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
25 35 1.00
ACGTcount: A:0.22, C:0.13, G:0.22, T:0.43
Consensus pattern (25 bp):
TGTTATCGATGGCTTTATACCGATA
Found at i:25963547 original size:27 final size:27
Alignment explanation
Indices: 25963517--25963597 Score: 135
Period size: 27 Copynumber: 3.0 Consensus size: 27
25963507 AATCTCATAT
* *
25963517 CTGTAGGCTAGTATTACTGAAATGCCC
1 CTGTAGGATAGAATTACTGAAATGCCC
25963544 CTGTAGGATAGAATTACTGAAATGCCC
1 CTGTAGGATAGAATTACTGAAATGCCC
*
25963571 CTGTAGGGTAGAATTACTGAAATGCCC
1 CTGTAGGATAGAATTACTGAAATGCCC
25963598 TTGGTTTACA
Statistics
Matches: 51, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 51 1.00
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.27
Consensus pattern (27 bp):
CTGTAGGATAGAATTACTGAAATGCCC
Found at i:25963612 original size:27 final size:26
Alignment explanation
Indices: 25963582--25963640 Score: 82
Period size: 26 Copynumber: 2.2 Consensus size: 26
25963572 TGTAGGGTAG
*
25963582 AATTACTGAAATGCCCTTGGTTTACAA
1 AATTACTG-AATACCCTTGGTTTACAA
* *
25963609 AATTATTGAATACCTTTGGTTTACAA
1 AATTACTGAATACCCTTGGTTTACAA
25963635 AATTAC
1 AATTAC
25963641 AAAAATACCC
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 21 0.75
27 7 0.25
ACGTcount: A:0.36, C:0.15, G:0.12, T:0.37
Consensus pattern (26 bp):
AATTACTGAATACCCTTGGTTTACAA
Found at i:25963663 original size:27 final size:27
Alignment explanation
Indices: 25963633--25963784 Score: 132
Period size: 27 Copynumber: 5.6 Consensus size: 27
25963623 TTTGGTTTAC
* *
25963633 AAAATTACAAAAATACCCTCAATTAGA
1 AAAATTACAAAAATACCCTCAATTTGT
*
25963660 AAAATTACCAAAATACCC-CTAATTTGT
1 AAAATTACAAAAATACCCTC-AATTTGT
*
25963687 AAAATTACCAAAATACCC-CTAATTTGT
1 AAAATTACAAAAATACCCTC-AATTTGT
* * *
25963714 GAAATTATC-GAAATACCCTTAATTTGT
1 AAAATTA-CAAAAATACCCTCAATTTGT
* * **
25963741 AAAATTACAGAAATACCC-CTGATTTAC
1 AAAATTACAAAAATACCCTC-AATTTGT
*
25963768 AAAATTACAGAAATACC
1 AAAATTACAAAAATACC
25963785 ATTGGCTTTC
Statistics
Matches: 109, Mismatches: 11, Indels: 10
0.84 0.08 0.08
Matches are distributed among these distances:
26 2 0.02
27 106 0.97
28 1 0.01
ACGTcount: A:0.47, C:0.20, G:0.06, T:0.28
Consensus pattern (27 bp):
AAAATTACAAAAATACCCTCAATTTGT
Found at i:25963693 original size:54 final size:54
Alignment explanation
Indices: 25963633--25963760 Score: 168
Period size: 54 Copynumber: 2.4 Consensus size: 54
25963623 TTTGGTTTAC
25963633 AAAATTACAAAAATA-CCCTCAATTAGAAAAATTACCAAAATACCCCTAATTTGT
1 AAAATTACAAAAATACCCCT-AATTAGAAAAATTACCAAAATACCCCTAATTTGT
* * ** * * *
25963687 AAAATTACCAAAATACCCCTAATTTGTGAAATTATCGAAATACCCTTAATTTGT
1 AAAATTACAAAAATACCCCTAATTAGAAAAATTACCAAAATACCCCTAATTTGT
*
25963741 AAAATTACAGAAATACCCCT
1 AAAATTACAAAAATACCCCT
25963761 GATTTACAAA
Statistics
Matches: 64, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
54 60 0.94
55 4 0.06
ACGTcount: A:0.46, C:0.20, G:0.05, T:0.28
Consensus pattern (54 bp):
AAAATTACAAAAATACCCCTAATTAGAAAAATTACCAAAATACCCCTAATTTGT
Found at i:25963773 original size:54 final size:54
Alignment explanation
Indices: 25963582--25963784 Score: 162
Period size: 54 Copynumber: 3.8 Consensus size: 54
25963572 TGTAGGGTAG
* * * * * * ** **
25963582 AATTACTGAAATGCCCTTGGTTTACAAAATTATTG-AATACCTTTGGTTTACAA
1 AATTACAGAAATACCCCTGATTTACAAAATTATCGAAATACCCTTAATTTGTAA
* * * * * * *
25963635 AATTACAAAAATA-CCCTCAATTAGAAAAATTACCAAAATACCCCTAATTTGTAA
1 AATTACAGAAATACCCCTGATTTA-CAAAATTATCGAAATACCCTTAATTTGTAA
* ***
25963689 AATTACCA-AAATACCCCTAATTTGTGAAATTATCGAAATACCCTTAATTTGTAA
1 AATTA-CAGAAATACCCCTGATTTACAAAATTATCGAAATACCCTTAATTTGTAA
25963743 AATTACAGAAATACCCCTGATTTACAAAATTA-CAGAAATACC
1 AATTACAGAAATACCCCTGATTTACAAAATTATC-GAAATACC
25963785 ATTGGCTTTC
Statistics
Matches: 115, Mismatches: 29, Indels: 11
0.74 0.19 0.07
Matches are distributed among these distances:
52 6 0.05
53 20 0.17
54 80 0.70
55 9 0.08
ACGTcount: A:0.43, C:0.19, G:0.08, T:0.31
Consensus pattern (54 bp):
AATTACAGAAATACCCCTGATTTACAAAATTATCGAAATACCCTTAATTTGTAA
Found at i:25963798 original size:27 final size:27
Alignment explanation
Indices: 25963602--25963785 Score: 83
Period size: 27 Copynumber: 6.9 Consensus size: 27
25963592 ATGCCCTTGG
** ** *
25963602 TTTACAAAATTATTG-AATACCTTTGG
1 TTTACAAAATTACAGAAATACCACTGA
* *
25963628 TTTACAAAATTACAAAAATACC-CTCA
1 TTTACAAAATTACAGAAATACCACTGA
* * * *
25963654 ATTAGAAAAATTACCA-AAATACCCCTAA
1 TTTA-CAAAATTA-CAGAAATACCACTGA
** * *
25963682 TTTGTAAAATTACCA-AAATACCCCTAA
1 TTTACAAAATTA-CAGAAATACCACTGA
*** *
25963709 TTTGTGAAATTATC-GAAATACC-CTTAA
1 TTTACAAAATTA-CAGAAATACCAC-TGA
** *
25963736 TTTGTAAAATTACAGAAATACCCCTGA
1 TTTACAAAATTACAGAAATACCACTGA
25963763 TTTACAAAATTACAGAAATACCA
1 TTTACAAAATTACAGAAATACCA
25963786 TTGGCTTTCA
Statistics
Matches: 131, Mismatches: 19, Indels: 15
0.79 0.12 0.09
Matches are distributed among these distances:
26 18 0.14
27 105 0.80
28 8 0.06
ACGTcount: A:0.45, C:0.18, G:0.07, T:0.30
Consensus pattern (27 bp):
TTTACAAAATTACAGAAATACCACTGA
Found at i:25965458 original size:49 final size:49
Alignment explanation
Indices: 25965386--25965569 Score: 242
Period size: 49 Copynumber: 3.7 Consensus size: 49
25965376 TGAGGTCACG
*
25965386 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCA
* * * * * * *
25965435 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTGAAAACTGTGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-T-TGGTCGCA
* *
25965486 TGTGTAGTACTAAGTACAGGCTACTACGTGTACCAGATTATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCA
* *
25965535 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCA
25965570 AATAGCTTCG
Statistics
Matches: 114, Mismatches: 19, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
49 73 0.64
50 2 0.02
51 39 0.34
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.29
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCA
Found at i:25965554 original size:100 final size:100
Alignment explanation
Indices: 25965381--25965568 Score: 349
Period size: 100 Copynumber: 1.9 Consensus size: 100
25965371 TATTGTGAGG
* *
25965381 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTACAGGCTACTACGTGTACCAGATAATTGGTCGCATGTGTAGTACT
25965446 AAGTGCAGGCTACTATGCGTACCTGAAAACTGTGA
66 AAGTGCAGGCTACTATGCGTACCTGAAAACTGTGA
*
25965481 TCACGTGTGTAGTACTAAGTACAGGCTACTACGTGTACCAGATTATTGGTCGCATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTACAGGCTACTACGTGTACCAGATAATTGGTCGCATGTGTAGTACT
25965546 AAGTGCAGGCTACTATGCGTACC
66 AAGTGCAGGCTACTATGCGTACC
25965569 AAATAGCTTC
Statistics
Matches: 85, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
100 85 1.00
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.29
Consensus pattern (100 bp):
TCACGTGTGTAGTACTAAGTACAGGCTACTACGTGTACCAGATAATTGGTCGCATGTGTAGTACT
AAGTGCAGGCTACTATGCGTACCTGAAAACTGTGA
Found at i:25966946 original size:25 final size:25
Alignment explanation
Indices: 25966910--25967051 Score: 171
Period size: 25 Copynumber: 5.7 Consensus size: 25
25966900 ATATGATATT
25966910 GATGGCTATGTGCCGATCTGTTATC
1 GATGGCTATGTGCCGATCTGTTATC
* * * *
25966935 GATGGCTTTGTGCCGATATGATATT
1 GATGGCTATGTGCCGATCTGTTATC
25966960 GATGGCTATGTGCCGATCTGTTATC
1 GATGGCTATGTGCCGATCTGTTATC
* * * *
25966985 GATGGCTTTGTACTGATATGATT-T-
1 GATGGCTATGTGCCGATCTG-TTATC
*
25967009 GATGGCTATGTGTCGATCTGTTATC
1 GATGGCTATGTGCCGATCTGTTATC
*
25967034 GATGGCTTTGTGCCGATC
1 GATGGCTATGTGCCGATC
25967052 GTATTATTAT
Statistics
Matches: 95, Mismatches: 19, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
23 2 0.02
24 16 0.17
25 75 0.79
26 2 0.02
ACGTcount: A:0.17, C:0.16, G:0.28, T:0.39
Consensus pattern (25 bp):
GATGGCTATGTGCCGATCTGTTATC
Found at i:25966974 original size:50 final size:50
Alignment explanation
Indices: 25966899--25967050 Score: 270
Period size: 50 Copynumber: 3.1 Consensus size: 50
25966889 AGGTGTTACA
25966899 GATATGATATTGATGGCTATGTGCCGATCTGTTATCGATGGCTTTGTGCC
1 GATATGATATTGATGGCTATGTGCCGATCTGTTATCGATGGCTTTGTGCC
* *
25966949 GATATGATATTGATGGCTATGTGCCGATCTGTTATCGATGGCTTTGTACT
1 GATATGATATTGATGGCTATGTGCCGATCTGTTATCGATGGCTTTGTGCC
*
25966999 GATATGAT-TTGATGGCTATGTGTCGATCTGTTATCGATGGCTTTGTGCC
1 GATATGATATTGATGGCTATGTGCCGATCTGTTATCGATGGCTTTGTGCC
25967048 GAT
1 GAT
25967051 CGTATTATTA
Statistics
Matches: 97, Mismatches: 5, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
49 41 0.42
50 56 0.58
ACGTcount: A:0.18, C:0.14, G:0.28, T:0.39
Consensus pattern (50 bp):
GATATGATATTGATGGCTATGTGCCGATCTGTTATCGATGGCTTTGTGCC
Found at i:25973252 original size:296 final size:297
Alignment explanation
Indices: 25972717--25973310 Score: 1037
Period size: 296 Copynumber: 2.0 Consensus size: 297
25972707 CCAAATACTT
* *
25972717 ATAAATAATTAATTTAATGCATATGACTTCTTTATTGACATTTTCCACAAATACCCTAAACTTTT
1 ATAAATAATAAATTTAATGCATATGACTTCTTTATTGACATTTTCCACAAATACCCTAAAATTTT
* *
25972782 TCATTTTATTCAATTTAGTCCCTAAAATCAAAATAAGCTTAATTTCACAATTAATCCCTAATCCA
66 TCATTTTATTCAATTTAGTCCCTAAAATCAAAACAAGCTTAATTTCAAAATTAATCCCTAATCCA
* *
25972847 TATTGCTGAATTTATTTTCATCAAAATCATCCCTTAAATTCTAAAATTTCGCAAGAAAACCAATC
131 TATTGCTGAATTTATTTACATCAAAATCATCCATTAAATTCTAAAATTTCGCAAGAAAACCAATC
25972912 AAATTTCAACATTTTATCTATTTAGTCCCTAAACTCAAAATTATTCAAAATTACTTTACAAAATA
196 AAATTTCAACATTTTATCTATTTAGTCCCTAAACTCAAAATTATTCAAAATTACTTTACAAAATA
*
25972977 GTTCAAATCCATCATCAAGCTTCAAGCTCAAATATAA
261 GTTCAAATACATCATCAAGCTTCAAGCTCAAATATAA
* * *
25973014 ATAAATAATAAATTTAATGCTTATGACTTCTTTATTGACATTTTCCATAATTACCCTAAAATTTT
1 ATAAATAATAAATTTAATGCATATGACTTCTTTATTGACATTTTCCACAAATACCCTAAAATTTT
*
25973079 TCATTTTATTCAATTTAGTCCCTAAAATCGAAACAAGCTTAATTTCAAAATT-ATCCCTAATCCA
66 TCATTTTATTCAATTTAGTCCCTAAAATCAAAACAAGCTTAATTTCAAAATTAATCCCTAATCCA
** *
25973143 TATTGCTGAATTTATTTACATCCTAATCATCCATTAAATTCTAAAATTTTGCAAGAAAACCAATC
131 TATTGCTGAATTTATTTACATCAAAATCATCCATTAAATTCTAAAATTTCGCAAGAAAACCAATC
*
25973208 AAGTTTCAACATTTTATCTATTTAGTCCCTAAACTCAAAATTATTCAAAATTACTTTACAAAATA
196 AAATTTCAACATTTTATCTATTTAGTCCCTAAACTCAAAATTATTCAAAATTACTTTACAAAATA
*
25973273 GTTCAAATACATCATCAATCTTCAAGCTCAAATATAA
261 GTTCAAATACATCATCAAGCTTCAAGCTCAAATATAA
25973310 A
1 A
25973311 CTTCAAGAAA
Statistics
Matches: 281, Mismatches: 16, Indels: 1
0.94 0.05 0.00
Matches are distributed among these distances:
296 172 0.61
297 109 0.39
ACGTcount: A:0.39, C:0.19, G:0.05, T:0.37
Consensus pattern (297 bp):
ATAAATAATAAATTTAATGCATATGACTTCTTTATTGACATTTTCCACAAATACCCTAAAATTTT
TCATTTTATTCAATTTAGTCCCTAAAATCAAAACAAGCTTAATTTCAAAATTAATCCCTAATCCA
TATTGCTGAATTTATTTACATCAAAATCATCCATTAAATTCTAAAATTTCGCAAGAAAACCAATC
AAATTTCAACATTTTATCTATTTAGTCCCTAAACTCAAAATTATTCAAAATTACTTTACAAAATA
GTTCAAATACATCATCAAGCTTCAAGCTCAAATATAA
Found at i:25976792 original size:28 final size:28
Alignment explanation
Indices: 25976700--25976826 Score: 120
Period size: 28 Copynumber: 4.7 Consensus size: 28
25976690 GAATTTTCCA
* * *
25976700 AAAGGCATCCTTTTAACAAAGATAGCCAC
1 AAAGGCTTCC-TTTAACAGAGATTGCCAC
* * *
25976729 AAAGGATTCCTTTAAC--AGA---CTAG
1 AAAGGCTTCCTTTAACAGAGATTGCCAC
*
25976752 AAAGGCTTCCTTTAATAGAGATTGCCAC
1 AAAGGCTTCCTTTAACAGAGATTGCCAC
* *
25976780 AAAGGCTTCCTTTAACATAGATTGCCAT
1 AAAGGCTTCCTTTAACAGAGATTGCCAC
*
25976808 AAAGGTTTCCTTTAACAGA
1 AAAGGCTTCCTTTAACAGA
25976827 TATCACCACA
Statistics
Matches: 80, Mismatches: 13, Indels: 11
0.77 0.12 0.11
Matches are distributed among these distances:
23 16 0.20
25 3 0.04
26 3 0.04
28 50 0.62
29 8 0.10
ACGTcount: A:0.36, C:0.20, G:0.16, T:0.28
Consensus pattern (28 bp):
AAAGGCTTCCTTTAACAGAGATTGCCAC
Found at i:25978729 original size:45 final size:47
Alignment explanation
Indices: 25978680--25978771 Score: 125
Period size: 45 Copynumber: 2.0 Consensus size: 47
25978670 ATTGTTCTCG
* *
25978680 TGTAAGACCATATCTGGGACGTTGGCA-T-CGATATATGTGATTACA
1 TGTAAGACCATACCTAGGACGTTGGCATTACGATATATGTGATTACA
*
25978725 TGTAAGACCATGCCTAGGACGTTGGCATTGTACGATATATGTGATTA
1 TGTAAGACCATACCTAGGACGTTGGCA-T-TACGATATATGTGATTA
25978772 TTCGAGTATC
Statistics
Matches: 40, Mismatches: 3, Indels: 4
0.85 0.06 0.09
Matches are distributed among these distances:
45 24 0.60
48 1 0.03
49 15 0.38
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.32
Consensus pattern (47 bp):
TGTAAGACCATACCTAGGACGTTGGCATTACGATATATGTGATTACA
Found at i:25980949 original size:18 final size:18
Alignment explanation
Indices: 25980908--25980943 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
25980898 CATTCCGAAG
* *
25980908 TATATATATATATACATA
1 TATATGTATATATACACA
25980926 TATATGTATATATACACA
1 TATATGTATATATACACA
25980944 AGTATGCCCA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.47, C:0.08, G:0.03, T:0.42
Consensus pattern (18 bp):
TATATGTATATATACACA
Found at i:25981455 original size:27 final size:27
Alignment explanation
Indices: 25981424--25981601 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
25981414 TAAATTGTAC
25981424 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
25981451 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
25981477 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
25981505 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
25981533 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
25981560 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
25981587 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
25981602 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:25981538 original size:82 final size:81
Alignment explanation
Indices: 25981425--25981580 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
25981415 AAATTGTACA
* *
25981425 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
25981489 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
25981506 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
25981571 TGCGAGTTGA
65 TGCGAATTGA
25981581 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:25981592 original size:82 final size:81
Alignment explanation
Indices: 25981421--25981601 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
25981411 GATTAAATTG
* *
25981421 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
25981486 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
25981502 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
25981566 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
25981584 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
25981602 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:25988898 original size:18 final size:18
Alignment explanation
Indices: 25988857--25988892 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
25988847 CATTCCGAAG
* *
25988857 TATATATATATATACATA
1 TATATGTATATATACACA
25988875 TATATGTATATATACACA
1 TATATGTATATATACACA
25988893 AGTATGCCCA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.47, C:0.08, G:0.03, T:0.42
Consensus pattern (18 bp):
TATATGTATATATACACA
Done.