Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 82679320
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4050000 characters in sequence are not A, C, G, or T
File 85 of 255
Found at i:25989406 original size:27 final size:27
Alignment explanation
Indices: 25989375--25989550 Score: 187
Period size: 27 Copynumber: 6.6 Consensus size: 27
25989365 TAAATTGTAC
25989375 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
25989402 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
25989428 ATGCACTAA--GTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
25989454 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
25989482 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
25989509 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
25989536 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
25989551 GACTCAATAT
Statistics
Matches: 125, Mismatches: 19, Indels: 10
0.81 0.12 0.06
Matches are distributed among these distances:
25 20 0.16
27 82 0.66
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:25991347 original size:22 final size:21
Alignment explanation
Indices: 25991311--25991351 Score: 64
Period size: 22 Copynumber: 1.9 Consensus size: 21
25991301 CTCTTAACAC
*
25991311 AGGGACACACGCCCGTGTGGG
1 AGGGACACACACCCGTGTGGG
25991332 AGGGACAACACACCCGTGTG
1 AGGGAC-ACACACCCGTGTG
25991352 ACATTTCAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 6 0.33
22 12 0.67
ACGTcount: A:0.24, C:0.29, G:0.37, T:0.10
Consensus pattern (21 bp):
AGGGACACACACCCGTGTGGG
Found at i:26004760 original size:53 final size:53
Alignment explanation
Indices: 26004722--26004910 Score: 162
Period size: 55 Copynumber: 3.5 Consensus size: 53
26004712 CTTTCCATTT
* *
26004722 CTTGACATGGTCTTACGTGGTATCCTTGCCTTATAAACTCACCATTGCCATGC
1 CTTGACATGGTCTTACATGGGATCCTTGCCTTATAAACTCACCATTGCCATGC
* * ** * * * *
26004775 CTTGGCATGGTCTTACATGGGATCTTTGCCTTATAGTAGTTTATCAATGCCATGT
1 CTTGACATGGTCTTACATGGGATCCTTGCCTTATA--AACTCACCATTGCCATGC
* *** * * * *
26004830 CTAGACATGGTCTTACATGATTTCCTTGCCTTGTAAAAATTACCAATGCCATGC
1 CTTGACATGGTCTTACATGGGATCCTTGCCTTAT-AAACTCACCATTGCCATGC
* * *
26004884 CTTGGCATGGTCTTACTTGGTATCCTT
1 CTTGACATGGTCTTACATGGGATCCTT
26004911 AAACCCTAAT
Statistics
Matches: 107, Mismatches: 26, Indels: 5
0.78 0.19 0.04
Matches are distributed among these distances:
53 31 0.29
54 36 0.34
55 39 0.36
56 1 0.01
ACGTcount: A:0.21, C:0.23, G:0.19, T:0.37
Consensus pattern (53 bp):
CTTGACATGGTCTTACATGGGATCCTTGCCTTATAAACTCACCATTGCCATGC
Found at i:26007572 original size:24 final size:24
Alignment explanation
Indices: 26007539--26007592 Score: 90
Period size: 24 Copynumber: 2.2 Consensus size: 24
26007529 AAGGCTATCA
26007539 GGAGAAGATTTAGGAGCTGATAAG
1 GGAGAAGATTTAGGAGCTGATAAG
* *
26007563 GGAGAGGATTTAGGAGCTGATTAG
1 GGAGAAGATTTAGGAGCTGATAAG
26007587 GGAGAA
1 GGAGAA
26007593 CGGTGTTGGC
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.35, C:0.04, G:0.41, T:0.20
Consensus pattern (24 bp):
GGAGAAGATTTAGGAGCTGATAAG
Found at i:26009069 original size:26 final size:26
Alignment explanation
Indices: 26008962--26009072 Score: 141
Period size: 27 Copynumber: 4.2 Consensus size: 26
26008952 AGGAAGCGTC
* **
26008962 CTGGTGGCTATGCCACAATTATCTAAT
1 CTGGTGGCTCTGCCAC-ATTATCTGTT
26008989 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGTT
*
26009016 CTCGTGGCTCTGCCACGATTATCTGTT
1 CTGGTGGCTCTGCCAC-ATTATCTGTT
* *
26009043 CTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTCTGCCACATTATCTGTT
26009069 CTGG
1 CTGG
26009073 CAGCCATGCT
Statistics
Matches: 75, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
26 16 0.21
27 57 0.76
28 2 0.03
ACGTcount: A:0.16, C:0.25, G:0.22, T:0.37
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGTT
Found at i:26012067 original size:13 final size:13
Alignment explanation
Indices: 26012049--26012074 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
26012039 ATATTATAAT
26012049 TATTTTATGTTAA
1 TATTTTATGTTAA
26012062 TATTTTATGTTAA
1 TATTTTATGTTAA
26012075 AAATAAAATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.00, G:0.08, T:0.62
Consensus pattern (13 bp):
TATTTTATGTTAA
Found at i:26013624 original size:40 final size:40
Alignment explanation
Indices: 26013569--26013680 Score: 136
Period size: 40 Copynumber: 2.8 Consensus size: 40
26013559 TATTCGGATG
26013569 ATATCCGGACTAAGATCCGAAGGCATTTGTGCTAGTCACT
1 ATATCCGGACTAAGATCCGAAGGCATTTGTGCTAGTCACT
* * * *
26013609 ATATCCGGACTAAGATCCGACGGCAATTGTGCTAGTTATT
1 ATATCCGGACTAAGATCCGAAGGCATTTGTGCTAGTCACT
* ** *
26013649 ATAACCGGGTTAAG-TCCCGAAGGCATTCGTGC
1 ATATCCGGACTAAGAT-CCGAAGGCATTTGTGC
26013681 GGGTTATTAT
Statistics
Matches: 61, Mismatches: 10, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
39 1 0.02
40 60 0.98
ACGTcount: A:0.27, C:0.22, G:0.24, T:0.27
Consensus pattern (40 bp):
ATATCCGGACTAAGATCCGAAGGCATTTGTGCTAGTCACT
Found at i:26013698 original size:40 final size:40
Alignment explanation
Indices: 26013643--26013765 Score: 228
Period size: 40 Copynumber: 3.1 Consensus size: 40
26013633 AATTGTGCTA
26013643 GTTATTATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGG
1 GTTATTATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGG
26013683 GTTATTATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGG
1 GTTATTATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGG
* *
26013723 GTTATTATAACCGGGCTAAGTCCCGAAGGCATTCGTGCTG
1 GTTATTATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGG
26013763 GTT
1 GTT
26013766 TTACATCCGA
Statistics
Matches: 81, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 81 1.00
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.28
Consensus pattern (40 bp):
GTTATTATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGG
Found at i:26020395 original size:13 final size:13
Alignment explanation
Indices: 26020377--26020402 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
26020367 ATATTATAAT
26020377 TATTTTATGTTAA
1 TATTTTATGTTAA
26020390 TATTTTATGTTAA
1 TATTTTATGTTAA
26020403 AAATAAAATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.00, G:0.08, T:0.62
Consensus pattern (13 bp):
TATTTTATGTTAA
Found at i:26021997 original size:40 final size:40
Alignment explanation
Indices: 26021913--26022089 Score: 187
Period size: 40 Copynumber: 4.4 Consensus size: 40
26021903 GGACTAAGAT
* * * * *
26021913 CCGAAGGCATTTGTGCTAGTCACTATATCCGGACTAAGAT-
1 CCGAAGGCATTCGTGCTAGTTATTATAACCGGGCTAAG-TC
* * *
26021953 CCGAAGGCAATT-GTGCTAGCTATTATAGCCGGGTTAAGTC
1 CCGAAGGC-ATTCGTGCTAGTTATTATAACCGGGCTAAGTC
** * *
26021993 CCGAAGGCATTCGTGCGGGTTATTATAATCGGGTTAAGTC
1 CCGAAGGCATTCGTGCTAGTTATTATAACCGGGCTAAGTC
**
26022033 CCGAAGGCATTCGTGCGGGTTATTATAACCGGGCTAAGTC
1 CCGAAGGCATTCGTGCTAGTTATTATAACCGGGCTAAGTC
*
26022073 TCGAAGGCATTCGTGCT
1 CCGAAGGCATTCGTGCT
26022090 GGTTGTTACA
Statistics
Matches: 119, Mismatches: 15, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
39 4 0.03
40 112 0.94
41 3 0.03
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.28
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCTAGTTATTATAACCGGGCTAAGTC
Found at i:26026459 original size:13 final size:13
Alignment explanation
Indices: 26026437--26026469 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
26026427 AAGGGTTTGT
26026437 TTAT-TAAACTAA
1 TTATCTAAACTAA
26026449 TTATCTAAACTAA
1 TTATCTAAACTAA
*
26026462 TTAACTAA
1 TTATCTAA
26026470 TTTAATCAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.39
Consensus pattern (13 bp):
TTATCTAAACTAA
Found at i:26029385 original size:12 final size:12
Alignment explanation
Indices: 26029365--26029398 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
26029355 TATGTCCTTA
26029365 AAACA-AAAAAT
1 AAACATAAAAAT
26029376 AAACATAAAAAT
1 AAACATAAAAAT
*
26029388 AAAAATAAAAA
1 AAACATAAAAA
26029399 AAATAAGAGG
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
11 5 0.24
12 16 0.76
ACGTcount: A:0.82, C:0.06, G:0.00, T:0.12
Consensus pattern (12 bp):
AAACATAAAAAT
Found at i:26031343 original size:21 final size:21
Alignment explanation
Indices: 26031303--26031343 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
26031293 CGCTTCTCCT
* *
26031303 ACGCCCGTGTGTTCTGGTACC
1 ACGCCCGTGTATTATGGTACC
*
26031324 ACGCCCGTGTATTATTGTAC
1 ACGCCCGTGTATTATGGTAC
26031344 ACGGCTGAAT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.15, C:0.29, G:0.24, T:0.32
Consensus pattern (21 bp):
ACGCCCGTGTATTATGGTACC
Found at i:26038122 original size:48 final size:47
Alignment explanation
Indices: 26038010--26038179 Score: 188
Period size: 48 Copynumber: 3.6 Consensus size: 47
26038000 CGAGGCTAAC
* * *
26038010 GCCATGTCCCAAACATGGTCTTACACT-AGCTCTCACATATCTGTGCCGAT
1 GCCATGTCCCAGACATGGTCTTACACTGA-CAC-CTC-TAT-TGTGCCGAT
* * *
26038060 GCCATGTCCTAGACATGGTCTTACATTGACACCTCTATATGTGCCAAT
1 GCCATGTCCCAGACATGGTCTTACACTGACACCTCTAT-TGTGCCGAT
*
26038108 GCCATGTCCCAGACATGGTCTTACACTGACACATC--TTGTAGCCGAT
1 GCCATGTCCCAGACATGGTCTTACACTGACACCTCTATTGT-GCCGAT
26038154 G-CATGTCCCAGACAT-GTCTTACACTG
1 GCCATGTCCCAGACATGGTCTTACACTG
26038180 GCTTACATCA
Statistics
Matches: 107, Mismatches: 11, Indels: 10
0.84 0.09 0.08
Matches are distributed among these distances:
44 11 0.10
45 17 0.16
46 7 0.07
48 43 0.40
49 2 0.02
50 26 0.24
51 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.28
Consensus pattern (47 bp):
GCCATGTCCCAGACATGGTCTTACACTGACACCTCTATTGTGCCGAT
Found at i:26038203 original size:46 final size:44
Alignment explanation
Indices: 26038054--26038224 Score: 166
Period size: 46 Copynumber: 3.7 Consensus size: 44
26038044 ACATATCTGT
* * * *
26038054 GCCGATGCCATGTCCTAGACATGGTCTTACATTGACACCTCTATATGT-
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGACACATC---ACGTA
* **
26038102 GCCAATGCCATGTCCCAGACATGGTCTTACACTGACACATCTTGTA
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGACACATCACGTA
*
26038148 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTTACATCACG-A
1 GCCGATGCATGTCCCAGACATGTCTTACACTGAC--ACATCACGTA
26038193 GGCCGATGCATGTCCCAGACATGTCTTACACT
1 -GCCGATGCATGTCCCAGACATGTCTTACACT
26038225 AGCTCTCGTC
Statistics
Matches: 110, Mismatches: 9, Indels: 10
0.85 0.07 0.08
Matches are distributed among these distances:
44 12 0.11
45 18 0.16
46 43 0.39
48 37 0.34
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (44 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGACACATCACGTA
Found at i:26038247 original size:46 final size:45
Alignment explanation
Indices: 26038151--26038322 Score: 159
Period size: 46 Copynumber: 3.6 Consensus size: 45
26038141 TCTTGTAGCC
* * * * *
26038151 GATGCATGTCCCAGACATGTCTTACACTGGCT-TACATCACGAGGCC
1 GATGCATGTCCCAGACATGTCTTACACTAGCTCT-C-TCTCAATGCT
*
26038197 GATGCATGTCCCAGACATGTCTTACACTAGCTCTCGTCTCAATGAT
1 GATGCATGTCCCAGACATGTCTTACACTAGCTCTC-TCTCAATGCT
*
26038243 GATGCCATGTCCCAGGCATGGTCTTACACTAGCTGGCTCTCAT-AATGTGGCT
1 GATG-CATGTCCCAGACAT-GTCTTACACTAGCT--CTCTC-TCAA--T-GCT
*
26038295 GATGCATGTCCAAGACATGTCTTACACT
1 GATGCATGTCCCAGACATGTCTTACACT
26038323 GGCACACAAA
Statistics
Matches: 106, Mismatches: 11, Indels: 14
0.81 0.08 0.11
Matches are distributed among these distances:
46 41 0.39
47 14 0.13
48 14 0.13
49 4 0.04
50 14 0.13
51 13 0.12
52 6 0.06
ACGTcount: A:0.23, C:0.28, G:0.21, T:0.28
Consensus pattern (45 bp):
GATGCATGTCCCAGACATGTCTTACACTAGCTCTCTCTCAATGCT
Found at i:26040119 original size:16 final size:16
Alignment explanation
Indices: 26040098--26040133 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
26040088 CATTGAGGAA
26040098 AAACTTAGAAAAATTC
1 AAACTTAGAAAAATTC
*
26040114 AAACTTAGAAAAATTT
1 AAACTTAGAAAAATTC
26040130 AAAC
1 AAAC
26040134 AGACAGATGG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.58, C:0.11, G:0.06, T:0.25
Consensus pattern (16 bp):
AAACTTAGAAAAATTC
Found at i:26046109 original size:48 final size:48
Alignment explanation
Indices: 26046051--26046451 Score: 712
Period size: 48 Copynumber: 8.4 Consensus size: 48
26046041 ATATACACAC
*
26046051 ATCTCCTACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
26046099 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
26046147 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATGCAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
26046195 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
26046243 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
26046291 ATCTCATACATATTTCACACTTGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
26046339 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
26046387 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
26046435 ATCTCATATATATTTCA
1 ATCTCATACATATTTCA
26046452 GCAATAGCTT
Statistics
Matches: 342, Mismatches: 11, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
48 342 1.00
ACGTcount: A:0.31, C:0.27, G:0.06, T:0.36
Consensus pattern (48 bp):
ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
Found at i:26050688 original size:46 final size:46
Alignment explanation
Indices: 26050527--26050696 Score: 157
Period size: 46 Copynumber: 3.7 Consensus size: 46
26050517 AACCCGCCCC
* * * * * *
26050527 TAAGTGAACTCGGACTCAACTCAACCAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCAGACATTTGCATCCA
* * * * *
26050573 TAAATGAACTCGGACTCAACTCCACGAGTTCGAATACCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTC--AGA-C-ATTTGCATCCA
* * *
26050621 TCA-CGAACTTGGACTCAACTCAACGAGTTCAGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCAGACATTTGCATCCA
26050666 TAAGTGAACTCGGACTCAACTCAACGAGTTC
1 TAAGTGAACTCGGACTCAACTCAACGAGTTC
26050697 GGATGCTCAA
Statistics
Matches: 96, Mismatches: 21, Indels: 14
0.73 0.16 0.11
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 4 0.04
46 52 0.54
47 24 0.25
48 2 0.02
49 2 0.02
50 4 0.04
ACGTcount: A:0.31, C:0.29, G:0.18, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCAGACATTTGCATCCA
Found at i:26063368 original size:33 final size:32
Alignment explanation
Indices: 26063319--26063382 Score: 83
Period size: 33 Copynumber: 2.0 Consensus size: 32
26063309 CTCGCTGCAA
* *
26063319 TCTGGTGGCTTCGCCACATATATATATATCTGT
1 TCTGGTGGCCTAGCCACA-ATATATATATCTGT
* *
26063352 TCTGGTGGCCTAGCCACAATATCTGTATCTG
1 TCTGGTGGCCTAGCCACAATATATATATCTG
26063383 GTGACTTTGT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
32 11 0.41
33 16 0.59
ACGTcount: A:0.20, C:0.23, G:0.20, T:0.36
Consensus pattern (32 bp):
TCTGGTGGCCTAGCCACAATATATATATCTGT
Found at i:26063396 original size:27 final size:26
Alignment explanation
Indices: 26063344--26063403 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
26063334 ACATATATAT
*
26063344 ATATCTGTTCTGGTGGCCTAGCCACA
1 ATATCTGTTCTGGTGACCTAGCCACA
* * *
26063370 ATATCTGTATCTGGTGACTTTGTCACA
1 ATATCTGT-TCTGGTGACCTAGCCACA
26063397 ATATCTG
1 ATATCTG
26063404 GCAGCTTCGC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.22, C:0.22, G:0.20, T:0.37
Consensus pattern (26 bp):
ATATCTGTTCTGGTGACCTAGCCACA
Found at i:26067502 original size:27 final size:27
Alignment explanation
Indices: 26067471--26067526 Score: 103
Period size: 27 Copynumber: 2.1 Consensus size: 27
26067461 TAATTAGTGT
26067471 ATTATGATGAAATAAAATAAAACAAAC
1 ATTATGATGAAATAAAATAAAACAAAC
*
26067498 ATTATGATGAAATGAAATAAAACAAAC
1 ATTATGATGAAATAAAATAAAACAAAC
26067525 AT
1 AT
26067527 ATTTCATCCA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.61, C:0.07, G:0.09, T:0.23
Consensus pattern (27 bp):
ATTATGATGAAATAAAATAAAACAAAC
Found at i:26078900 original size:20 final size:19
Alignment explanation
Indices: 26078846--26078900 Score: 51
Period size: 20 Copynumber: 2.8 Consensus size: 19
26078836 TTATACTTAA
*
26078846 TTTGAA-TTATTGTTCTAT
1 TTTGAAGTTAATGTTCTAT
*
26078864 TTTGAAGTTTAAGGTTCTAT
1 TTTGAAG-TTAATGTTCTAT
26078884 TTTGTACAG-TAATGTTC
1 TTTG-A-AGTTAATGTTC
26078901 CATAACCCTA
Statistics
Matches: 30, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
18 6 0.20
20 21 0.70
21 1 0.03
22 2 0.07
ACGTcount: A:0.24, C:0.07, G:0.16, T:0.53
Consensus pattern (19 bp):
TTTGAAGTTAATGTTCTAT
Found at i:26079648 original size:35 final size:35
Alignment explanation
Indices: 26079602--26079671 Score: 140
Period size: 35 Copynumber: 2.0 Consensus size: 35
26079592 GATAAGAAGA
26079602 AAAAAAAGTTCTTGAATTGTAGTTGGGACATAGAT
1 AAAAAAAGTTCTTGAATTGTAGTTGGGACATAGAT
26079637 AAAAAAAGTTCTTGAATTGTAGTTGGGACATAGAT
1 AAAAAAAGTTCTTGAATTGTAGTTGGGACATAGAT
26079672 CAATTGTAGA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.40, C:0.06, G:0.23, T:0.31
Consensus pattern (35 bp):
AAAAAAAGTTCTTGAATTGTAGTTGGGACATAGAT
Found at i:26082105 original size:19 final size:20
Alignment explanation
Indices: 26082078--26082130 Score: 63
Period size: 20 Copynumber: 2.7 Consensus size: 20
26082068 ACGGGATTGT
* *
26082078 ACTTGGGTGCCTTTG-TTAC
1 ACTTTGGTGCCTCTGATTAC
* *
26082097 ACTTTGGTGTCTCTGATTGC
1 ACTTTGGTGCCTCTGATTAC
26082117 ACTTTGGTGCCTCT
1 ACTTTGGTGCCTCT
26082131 AATTGCACCA
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
19 12 0.43
20 16 0.57
ACGTcount: A:0.09, C:0.23, G:0.25, T:0.43
Consensus pattern (20 bp):
ACTTTGGTGCCTCTGATTAC
Found at i:26082119 original size:20 final size:20
Alignment explanation
Indices: 26082096--26082138 Score: 68
Period size: 20 Copynumber: 2.1 Consensus size: 20
26082086 GCCTTTGTTA
* *
26082096 CACTTTGGTGTCTCTGATTG
1 CACTTTGGTGCCTCTAATTG
26082116 CACTTTGGTGCCTCTAATTG
1 CACTTTGGTGCCTCTAATTG
26082136 CAC
1 CAC
26082139 CATCGTGCCT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.14, C:0.26, G:0.21, T:0.40
Consensus pattern (20 bp):
CACTTTGGTGCCTCTAATTG
Found at i:26083956 original size:93 final size:93
Alignment explanation
Indices: 26083844--26084016 Score: 294
Period size: 93 Copynumber: 1.9 Consensus size: 93
26083834 CGCCCATAAG
* * *
26083844 CGAACTCGGACTCAACTCAACGAGCTT-GGGCGTTCGGATCCATAAGTGAACTCGGACTCAACTC
1 CGAACTCGGACTCAACTCAACGAG-TTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTC
26083908 AACGAGTTCGGATGCCTAGTTACATCTCA
65 AACGAGTTCGGATGCCTAGTTACATCTCA
*
26083937 CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
26084002 ACGAGTTCGGATGCC
66 ACGAGTTCGGATGCC
26084017 CAAATATCCC
Statistics
Matches: 75, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
92 2 0.03
93 73 0.97
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:26084012 original size:46 final size:46
Alignment explanation
Indices: 26083837--26084012 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
26083827 TGTAACCCGC
* * * *
26083837 CCATAAGCGAACTCGGACTCAACTCAACGAGCTT-GGGCGTTCGGAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAG-TTCGGACATTTGCAT
* * *
26083883 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCAT
*
26083933 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
*
26083976 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
26084013 TGCCCAAATA
Statistics
Matches: 109, Mismatches: 13, Indels: 16
0.79 0.09 0.12
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 4 0.04
46 61 0.56
47 29 0.27
48 2 0.02
49 2 0.02
50 3 0.03
ACGTcount: A:0.29, C:0.28, G:0.22, T:0.22
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
Found at i:26084031 original size:46 final size:46
Alignment explanation
Indices: 26083888--26084031 Score: 136
Period size: 46 Copynumber: 3.1 Consensus size: 46
26083878 CGGATCCATA
* * *
26083888 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTC
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCA--TATATCCC
* * *
26083936 A-CGAACTCGGACTCAACTCAACGAGTTCGGA----CATTTGCATCCATA
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCATAT--ATCC--C
*
26083981 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATATCCC
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCATATATCCC
26084027 AGTGA
1 AGTGA
26084032 CATGTCACTT
Statistics
Matches: 77, Mismatches: 10, Indels: 20
0.72 0.09 0.19
Matches are distributed among these distances:
41 1 0.01
43 4 0.05
45 1 0.01
46 34 0.44
47 29 0.38
48 5 0.06
50 3 0.04
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCATATATCCC
Found at i:26086285 original size:30 final size:31
Alignment explanation
Indices: 26086249--26086330 Score: 98
Period size: 30 Copynumber: 2.7 Consensus size: 31
26086239 AACAAGAAAA
*
26086249 CGGAATAAAGAAATCCAAGATAGAGA-AACC
1 CGGAATAAAGAAATCCAAGATAAAGAGAACC
*
26086279 CGGAATAAAGAAATCC-AGAATAAAGAGATCC
1 CGGAATAAAGAAATCCAAG-ATAAAGAGAACC
* *
26086310 AGG-ATAAAGAAACCCAAGATA
1 CGGAATAAAGAAATCCAAGATA
26086331 CGATACTATG
Statistics
Matches: 45, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
29 2 0.04
30 36 0.80
31 7 0.16
ACGTcount: A:0.54, C:0.16, G:0.20, T:0.11
Consensus pattern (31 bp):
CGGAATAAAGAAATCCAAGATAAAGAGAACC
Found at i:26086330 original size:15 final size:15
Alignment explanation
Indices: 26086253--26086330 Score: 70
Period size: 15 Copynumber: 5.2 Consensus size: 15
26086243 AGAAAACGGA
26086253 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* **
26086268 ATAGAGAAA-CCCGG
1 ATAAAGAAATCCAAG
26086282 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
26086297 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
26086313 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
26086328 ATA
1 ATA
26086331 CGATACTATG
Statistics
Matches: 50, Mismatches: 10, Indels: 6
0.76 0.15 0.09
Matches are distributed among these distances:
14 3 0.06
15 44 0.88
16 3 0.06
ACGTcount: A:0.55, C:0.15, G:0.18, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:26089325 original size:46 final size:45
Alignment explanation
Indices: 26089258--26089431 Score: 183
Period size: 46 Copynumber: 3.8 Consensus size: 45
26089248 TGTAACCCGC
* *
26089258 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTT-GCAT
*
26089304 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTGCAT
* * * * * *
26089354 -C-TCA-TGAATTCAGACTCAACTCAACGAGTTCAGACATTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGC-GTTGCAT
26089397 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCG
26089432 AATGCCCAAA
Statistics
Matches: 106, Mismatches: 14, Indels: 16
0.78 0.10 0.12
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 59 0.56
47 26 0.25
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTGCAT
Found at i:26089452 original size:46 final size:45
Alignment explanation
Indices: 26089309--26089439 Score: 122
Period size: 47 Copynumber: 2.8 Consensus size: 45
26089299 CGCATCCATA
* *
26089309 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTC
1 AGTGAACTCGGACTCAACTCAACGAGTTCGAATGCCCA--TACATC-C
* * *** * *
26089357 A-TGAATTCAGACTCAACTCAACGAGTTCAGACATTTGCATCCAT-A
1 AGTGAACTCGGACTCAACTCAACGAGTTC-GA-ATGCCCATACATCC
26089402 AGTGAACTCGGACTCAACTCAACGAGTTCGAATGCCCA
1 AGTGAACTCGGACTCAACTCAACGAGTTCGAATGCCCA
26089440 AATATCCCAG
Statistics
Matches: 66, Mismatches: 14, Indels: 10
0.73 0.16 0.11
Matches are distributed among these distances:
44 4 0.06
45 3 0.05
46 25 0.38
47 29 0.44
48 2 0.03
49 3 0.05
ACGTcount: A:0.31, C:0.27, G:0.18, T:0.24
Consensus pattern (45 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGAATGCCCATACATCC
Found at i:26091014 original size:26 final size:26
Alignment explanation
Indices: 26090985--26091035 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
26090975 CAATTGGTAA
26090985 GTTTAAGTTCCTTTATACGAGCATAT
1 GTTTAAGTTCCTTTATACGAGCATAT
26091011 GTTTAAGTTCCTTTATACGAGCATA
1 GTTTAAGTTCCTTTATACGAGCATA
26091036 CTAAGCACTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.16, G:0.16, T:0.41
Consensus pattern (26 bp):
GTTTAAGTTCCTTTATACGAGCATAT
Found at i:26095157 original size:40 final size:39
Alignment explanation
Indices: 26095093--26095384 Score: 334
Period size: 40 Copynumber: 7.3 Consensus size: 39
26095083 TCTTCGGAAT
* * *
26095093 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATAT-AGCACTAGCACAAATGCCTTCGGGTC
* *
26095132 TTAACCCGGGTATAGCAACTAGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAGC-ACTAGCACAAATGCCTTCGGGTC
* *
26095172 TTAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAGC-ACTAGCACAAATGCCTTCGGGTC
* * *
26095212 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGAT-ATAGCACTAGCACAAATGCCTTCGGGTC
* * *
26095252 TTAACCCGGGTATAGCAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAGC-ACTAGCACAAATGCCTTCGGGTC
* * * *
26095292 TTAGCCCGGATATATCGCTTAGCACAAAAGCCTTCGGGAC
1 TTAGCCCGGATATAGCAC-TAGCACAAATGCCTTCGGGTC
* * *
26095332 TTAGCCCGGATATAGCGCTTAGCACAAAAGCCTTCGGGAC
1 TTAGCCCGGATATAGCAC-TAGCACAAATGCCTTCGGGTC
26095372 TTAGCCCGGATAT
1 TTAGCCCGGATAT
26095385 CATTCGAGTA
Statistics
Matches: 222, Mismatches: 26, Indels: 9
0.86 0.10 0.04
Matches are distributed among these distances:
39 9 0.04
40 209 0.94
41 4 0.02
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (39 bp):
TTAGCCCGGATATAGCACTAGCACAAATGCCTTCGGGTC
Found at i:26095317 original size:120 final size:120
Alignment explanation
Indices: 26095084--26095343 Score: 407
Period size: 120 Copynumber: 2.2 Consensus size: 120
26095074 ACCCAAGTTT
* * *
26095084 CTTCGGAATTTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGC
1 CTTCGGGACTTAGCCCGGATAAAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGC
* *
26095148 AACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAATGC
66 AACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTAGCACAAAAGC
* * *
26095203 CTTCGGGTCTTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGC
1 CTTCGGGACTTAGCCCGGATAAAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGC
* *
26095268 AACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATATC-GCTTAGCACAAAAGC
66 AACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAAC-TAGCACAAAAGC
26095323 CTTCGGGACTTAGCCCGGATA
1 CTTCGGGACTTAGCCCGGATA
26095344 TAGCGCTTAG
Statistics
Matches: 128, Mismatches: 11, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
119 11 0.09
120 117 0.91
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.24
Consensus pattern (120 bp):
CTTCGGGACTTAGCCCGGATAAAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGC
AACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTAGCACAAAAGC
Found at i:26095355 original size:120 final size:120
Alignment explanation
Indices: 26095084--26095380 Score: 402
Period size: 120 Copynumber: 2.5 Consensus size: 120
26095074 ACCCAAGTTT
* * * * *
26095084 CTTCGGAATTTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGC
1 CTTCGGGACTTAGCCCGGATAAAAGCACTAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGC
* *
26095148 AACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAATGC
66 AACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTAGCACAAAAGC
* *
26095203 CTTCGGGTCTTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGC
1 CTTCGGGACTTAGCCCGGATAAAAGCACTAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGC
* *
26095268 AACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATATC-GCTTAGCACAAAAGC
66 AACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAAC-TAGCACAAAAGC
* * ** * *
26095323 CTTCGGGACTTAGCCCGGAT-ATAGCGCTTAGCACAAAAGCCTTCGGGACTTAGCCCGG
1 CTTCGGGACTTAGCCCGGATAAAAGCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGG
26095381 ATATCATTCG
Statistics
Matches: 157, Mismatches: 18, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
119 15 0.10
120 142 0.90
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.23
Consensus pattern (120 bp):
CTTCGGGACTTAGCCCGGATAAAAGCACTAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGC
AACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTAGCACAAAAGC
Found at i:26103150 original size:45 final size:44
Alignment explanation
Indices: 26103086--26103213 Score: 184
Period size: 45 Copynumber: 2.8 Consensus size: 44
26103076 ATTATTGTAT
*
26103086 GACACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGA
1 GACACTATTCGGG-CTTTGAGCCTAGCAGGCTATAATGCCAGTGA
*
26103131 GACACTATTCGGGACTTTGAGCCTAGCAGGCTACAATGCCAGTGA
1 GACACTATTCGGG-CTTTGAGCCTAGCAGGCTATAATGCCAGTGA
* * *
26103176 GATACTATTTGAGCTTTCGAGCCTAGCAGGCTATAATG
1 GACACTATTCGGGCTTT-GAGCCTAGCAGGCTATAATG
26103214 TTGATGAAAG
Statistics
Matches: 75, Mismatches: 7, Indels: 2
0.89 0.08 0.02
Matches are distributed among these distances:
44 4 0.05
45 71 0.95
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.26
Consensus pattern (44 bp):
GACACTATTCGGGCTTTGAGCCTAGCAGGCTATAATGCCAGTGA
Found at i:26110794 original size:45 final size:45
Alignment explanation
Indices: 26110730--26110938 Score: 273
Period size: 45 Copynumber: 4.7 Consensus size: 45
26110720 ATTATCGTAC
* *
26110730 GACACTATTCGGGCCTTTGACCCTAGCAGGCTATAATACCGGTGA
1 GACACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGA
*
26110775 GACACTATTCGGGCCTTTGAGCCTAGCAGGCCATAATGCCGGTGA
1 GACACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGA
* * * *
26110820 AATACTATTCGGGCCTTTGAGCCTAGCAGGCTACAATGCCGATGA
1 GACACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGA
* *
26110865 GATACTATTCAGG-CTTTCGAGCCTAGCAGGCTATAATGCCGGTGA
1 GACACTATTCGGGCCTTT-GAGCCTAGCAGGCTATAATGCCGGTGA
**
26110910 -A-AGGATATCGGG-CTTTGAGCCTAGCAGGC
1 GACACTAT-TCGGGCCTTTGAGCCTAGCAGGC
26110939 AAAATTTCGG
Statistics
Matches: 147, Mismatches: 15, Indels: 6
0.88 0.09 0.04
Matches are distributed among these distances:
43 16 0.11
44 13 0.09
45 118 0.80
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.24
Consensus pattern (45 bp):
GACACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGA
Found at i:26115015 original size:56 final size:56
Alignment explanation
Indices: 26114948--26115059 Score: 215
Period size: 56 Copynumber: 2.0 Consensus size: 56
26114938 AAAGTCTCAG
26114948 ACACAGTGCATGCTATATAAGAATGCATAGATCCAACATCAATCAATGAAGTATAA
1 ACACAGTGCATGCTATATAAGAATGCATAGATCCAACATCAATCAATGAAGTATAA
*
26115004 ACACAGTGCATGCTATATAAGAATGCGTAGATCCAACATCAATCAATGAAGTATAA
1 ACACAGTGCATGCTATATAAGAATGCATAGATCCAACATCAATCAATGAAGTATAA
26115060 GGTACATTAT
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 55 1.00
ACGTcount: A:0.44, C:0.18, G:0.15, T:0.23
Consensus pattern (56 bp):
ACACAGTGCATGCTATATAAGAATGCATAGATCCAACATCAATCAATGAAGTATAA
Found at i:26118942 original size:54 final size:53
Alignment explanation
Indices: 26118777--26119445 Score: 570
Period size: 54 Copynumber: 12.4 Consensus size: 53
26118767 TACCCTACAG
* * * * *
26118777 GGGTATTTCGGTAATTTTAC-ACTACAAGAGTATTTC-AGTAATTTTACAAACTGG
1 GGGTATTTCGGTAATTTTACAAAT-C-GGGGTATTTCGA-TAATTTTACAAATTGA
* * * * *
26118831 GGGTATTTCGATAATTTTACAAAAT-AGGGTATTTCGGTAATTTTACAAACTGG
1 GGGTATTTCGGTAATTTTAC-AAATCGGGGTATTTCGATAATTTTACAAATTGA
* *
26118884 GGGTATTTCGATAATTTTACAAATCGGGAGTATTTCTATAATTTTACAAATTGA
1 GGGTATTTCGGTAATTTTACAAATCGGG-GTATTTCGATAATTTTACAAATTGA
* * *
26118938 GGGTATTTTGGTAATTTTAC-AATCTGAGGGTATTTTCG-TAATTTTACAAACTGG
1 GGGTATTTCGGTAATTTTACAAATC-G-GGGTA-TTTCGATAATTTTACAAATTGA
* * * * **
26118992 GGGTATTTCGGTAATTTCAC-AATCCGAGGGTATTTTGGTAATATTACAAATCAA
1 GGGTATTTCGGTAATTTTACAAAT-CG-GGGTATTTCGATAATTTTACAAATTGA
* * * * *
26119046 GGGTATTTTGGGTAATTTTACAAATTTGGGGTATCTCGGTAATTTTAC-AATCTAA
1 GGGTA-TTTCGGTAATTTTACAAA-TCGGGGTATTTCGATAATTTTACAAAT-TGA
* * * **
26119101 GGGTATTTCAGTAATTTTACAAATTGGGGTTATTTCGATAATTTTA-TAATCCAA
1 GGGTATTTCGGTAATTTTACAAATCGGGG-TATTTCGATAATTTTACAAAT-TGA
* * *** *
26119155 AGGTATTTGGGTAATTTTACAAACTAAAGGTATTTTGATAATTTTA-AAATTTGA
1 GGGTATTTCGGTAATTTTACAAA-TCGGGGTATTTCGATAATTTTACAAA-TTGA
* * * *
26119209 GGGTATTTCGATAATTTTACAATTTGAGGGTATTTCGGTAATTTTACAAATT-A
1 GGGTATTTCGGTAATTTTACAAATCG-GGGTATTTCGATAATTTTACAAATTGA
* * *
26119262 GGGGTATTTCGATAATTTTACAAATTGGGGGTATTTCGATAATTTTACAAATTGG
1 -GGGTATTTCGGTAATTTTACAAA-TCGGGGTATTTCGATAATTTTACAAATTGA
* * * * * *
26119317 GGGTATTTCAGTAATTTTAAAAACTTGGGGTATTTCAATAATTTTACAAACTGG
1 GGGTATTTCGGTAATTTTACAAA-TCGGGGTATTTCGATAATTTTACAAATTGA
* *
26119371 GGGTATTTTGGTAATTTTACAAATTAGGGGTATTT-GATAATTTTAC-AATTCGA
1 GGGTATTTCGGTAATTTTACAAA-TCGGGGTATTTCGATAATTTTACAAATT-GA
*
26119424 GAGTATTTCGGTAATTTTACAA
1 GGGTATTTCGGTAATTTTACAA
26119446 CCTGGGATCT
Statistics
Matches: 517, Mismatches: 74, Indels: 49
0.81 0.12 0.08
Matches are distributed among these distances:
52 7 0.01
53 94 0.18
54 357 0.69
55 53 0.10
56 5 0.01
57 1 0.00
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.41
Consensus pattern (53 bp):
GGGTATTTCGGTAATTTTACAAATCGGGGTATTTCGATAATTTTACAAATTGA
Found at i:26118980 original size:81 final size:80
Alignment explanation
Indices: 26118777--26119445 Score: 569
Period size: 81 Copynumber: 8.3 Consensus size: 80
26118767 TACCCTACAG
* * * *
26118777 GGGTATTTCGGTAATTTTACACTAC-AAGAGTATTTC-AGTAATTTTACAAACTGGGGGTATTTC
1 GGGTATTTCGGTAATTTTACAAT-CTGAGGGTATTTCGA-TAATTTTACAAA-TCGGGGTATTTC
*
26118840 GATAATTTTACAAAAT-A
63 GATAATTTTACAAATTGA
* * *
26118857 GGGTATTTCGGTAATTTTACAAACTGGGGGTATTTCGATAATTTTACAAATCGGGAGTATTTCTA
1 GGGTATTTCGGTAATTTTACAATCTGAGGGTATTTCGATAATTTTACAAATCGGG-GTATTTCGA
26118922 TAATTTTACAAATTGA
65 TAATTTTACAAATTGA
* *
26118938 GGGTATTTTGGTAATTTTACAATCTGAGGGTATTTTCG-TAATTTTACAAACTGGGGGTATTTCG
1 GGGTATTTCGGTAATTTTACAATCTGAGGGTA-TTTCGATAATTTTACAAA-TCGGGGTATTTCG
* * *
26119002 GTAATTTCAC-AATCCGA
64 ATAATTTTACAAAT-TGA
* * * * * * *
26119019 GGGTATTTTGGTAATATTACAAATC-AAGGGTATTTTGGGTAATTTTACAAATTTGGGGTATCTC
1 GGGTATTTCGGTAATTTTAC-AATCTGAGGGTA-TTTCGATAATTTTACAAA-TCGGGGTATTTC
* *
26119083 GGTAATTTTAC-AATCTAA
63 GATAATTTTACAAAT-TGA
* * **
26119101 GGGTATTTCAGTAATTTTACAAAT-TG-GGGTTATTTCGATAATTTTA-TAATCCAAAGGTATTT
1 GGGTATTTCGGTAATTTTAC-AATCTGAGGG-TATTTCGATAATTTTACAAAT-C-GGGGTATTT
* * * *
26119163 GGGTAATTTTACAAACTAA
62 CGATAATTTTACAAATTGA
* * * * * * * *
26119182 AGGTATTTTGATAATTTTAAAATTTGAGGGTATTTCGATAATTTTACAATTTGAGGGTATTTCGG
1 GGGTATTTCGGTAATTTTACAATCTGAGGGTATTTCGATAATTTTACAAATCG-GGGTATTTCGA
26119247 TAATTTTACAAATT-A
65 TAATTTTACAAATTGA
* * *
26119262 GGGGTATTTCGATAATTTTACAAAT-TGGGGGTATTTCGATAATTTTACAAATTGGGGGTATTTC
1 -GGGTATTTCGGTAATTTTAC-AATCTGAGGGTATTTCGATAATTTTACAAA-TCGGGGTATTTC
*
26119326 -AGTAATTTTAAAAACTTG-
63 GA-TAATTTTACAAA-TTGA
** * * * * *
26119344 GGGTATTTCAATAATTTTACAAACTGGGGGTATTTTGGTAATTTTACAAATTAGGGGTATTT-GA
1 GGGTATTTCGGTAATTTTACAATCTGAGGGTATTTCGATAATTTTACAAA-TCGGGGTATTTCGA
26119408 TAATTTTAC-AATTCGA
65 TAATTTTACAAATT-GA
*
26119424 GAGTATTTCGGTAATTTTACAA
1 GGGTATTTCGGTAATTTTACAA
26119446 CCTGGGATCT
Statistics
Matches: 494, Mismatches: 67, Indels: 56
0.80 0.11 0.09
Matches are distributed among these distances:
78 2 0.00
79 9 0.02
80 100 0.20
81 296 0.60
82 87 0.18
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.41
Consensus pattern (80 bp):
GGGTATTTCGGTAATTTTACAATCTGAGGGTATTTCGATAATTTTACAAATCGGGGTATTTCGAT
AATTTTACAAATTGA
Found at i:26119444 original size:27 final size:27
Alignment explanation
Indices: 26118777--26119445 Score: 464
Period size: 27 Copynumber: 24.8 Consensus size: 27
26118767 TACCCTACAG
* * *
26118777 GGGTATTTCGGTAATTTTACACTACAA
1 GGGTATTTCGGTAATTTTACAATTCGA
* * * *
26118804 GAGTATTTCAGTAATTTTACAA-ACTGG
1 GGGTATTTCGGTAATTTTACAATTC-GA
* *
26118831 GGGTATTTCGATAATTTTACAAAAT--A
1 GGGTATTTCGGTAATTTTAC-AATTCGA
* *
26118857 GGGTATTTCGGTAATTTTACAA-ACTGG
1 GGGTATTTCGGTAATTTTACAATTC-GA
* *
26118884 GGGTATTTCGATAATTTTACAAATCG-
1 GGGTATTTCGGTAATTTTACAATTCGA
**
26118910 GGAGTATTTCTATAATTTTACAAATT-GA
1 GG-GTATTTCGGTAATTTTAC-AATTCGA
*
26118938 GGGTATTTTGGTAATTTTACAA-TCTGA
1 GGGTATTTCGGTAATTTTACAATTC-GA
* *
26118965 GGGTATTTTC-GTAATTTTACAA-ACTGG
1 GGGTA-TTTCGGTAATTTTACAATTC-GA
* *
26118992 GGGTATTTCGGTAATTTCACAATCCGA
1 GGGTATTTCGGTAATTTTACAATTCGA
* * * *
26119019 GGGTATTTTGGTAATATTACAAATCAA
1 GGGTATTTCGGTAATTTTACAATTCGA
* *
26119046 GGGTATTTTGGGTAATTTTACAAATTTG-
1 GGGTA-TTTCGGTAATTTTAC-AATTCGA
* *
26119074 GGGTATCTCGGTAATTTTACAA-TCTAA
1 GGGTATTTCGGTAATTTTACAATTC-GA
*
26119101 GGGTATTTCAGTAATTTTACAAATT-G-
1 GGGTATTTCGGTAATTTTAC-AATTCGA
* * * *
26119127 GGGTTATTTCGATAATTTTATAATCCAA
1 GGG-TATTTCGGTAATTTTACAATTCGA
* * * *
26119155 AGGTATTTGGGTAATTTTACAA-ACTAA
1 GGGTATTTCGGTAATTTTACAATTC-GA
* * * * *
26119182 AGGTATTTTGATAATTTTAAAATTTGA
1 GGGTATTTCGGTAATTTTACAATTCGA
* *
26119209 GGGTATTTCGATAATTTTACAATTTGA
1 GGGTATTTCGGTAATTTTACAATTCGA
*
26119236 GGGTATTTCGGTAATTTTACAAATTAG-
1 GGGTATTTCGGTAATTTTAC-AATTCGA
* *
26119263 GGGTATTTCGATAATTTTACAAATT-GG
1 GGGTATTTCGGTAATTTTAC-AATTCGA
* *
26119290 GGGTATTTCGATAATTTTACAAATT-GG
1 GGGTATTTCGGTAATTTTAC-AATTCGA
* *
26119317 GGGTATTTCAGTAATTTTAAAAACTT-G-
1 GGGTATTTCGGTAATTTT-ACAA-TTCGA
** * *
26119344 GGGTATTTCAATAATTTTACAA-ACTGG
1 GGGTATTTCGGTAATTTTACAATTC-GA
* *
26119371 GGGTATTTTGGTAATTTTACAAATTAG-
1 GGGTATTTCGGTAATTTTAC-AATTCGA
*
26119398 GGGTATTT-GATAATTTTACAATTCGA
1 GGGTATTTCGGTAATTTTACAATTCGA
*
26119424 GAGTATTTCGGTAATTTTACAA
1 GGGTATTTCGGTAATTTTACAA
26119446 CCTGGGATCT
Statistics
Matches: 524, Mismatches: 81, Indels: 74
0.77 0.12 0.11
Matches are distributed among these distances:
25 9 0.02
26 60 0.11
27 405 0.77
28 46 0.09
29 4 0.01
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.41
Consensus pattern (27 bp):
GGGTATTTCGGTAATTTTACAATTCGA
Found at i:26126025 original size:6 final size:6
Alignment explanation
Indices: 26125996--26126210 Score: 145
Period size: 6 Copynumber: 34.8 Consensus size: 6
26125986 TATTAGAACT
* * * * *
26125996 AGAATC AAAATG AGAATC AAAATC AGAATC AGAATG AG-GTGAC AGAATC
1 AGAATC AGAATC AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC
* * * *
26126045 AAAATC AGAATC AGAATC AGAATT AGGTAA-C AAAATC AGAATC AGTATC
1 AGAATC AGAATC AGAATC AGAATC A-G-AATC AGAATC AGAATC AGAATC
* *
26126094 AGGTAA-C AGAATC AGAATC AGTATC AGGTAA-C AGAATC AGAATC AGAACC
1 A-G-AATC AGAATC AGAATC AGAATC A-G-AATC AGAATC AGAATC AGAATC
* * *
26126144 AGAATC AGAATT AGGTAA-C AGAATC AGAATC AGAATC AGTATT AGGTAA-C
1 AGAATC AGAATC A-G-AATC AGAATC AGAATC AGAATC AGAATC A-G-AATC
*
26126194 AGAATT AGAATC AGAAT
1 AGAATC AGAATC AGAAT
26126211 GTGAATGCAA
Statistics
Matches: 161, Mismatches: 30, Indels: 36
0.71 0.13 0.16
Matches are distributed among these distances:
5 11 0.07
6 128 0.80
7 14 0.09
8 8 0.05
ACGTcount: A:0.49, C:0.13, G:0.19, T:0.19
Consensus pattern (6 bp):
AGAATC
Found at i:26126043 original size:31 final size:31
Alignment explanation
Indices: 26126008--26126210 Score: 193
Period size: 31 Copynumber: 6.5 Consensus size: 31
26125998 AATCAAAATG
* * *
26126008 AGAATCAAAATCAGAATCAGAATGAGGTGAC
1 AGAATCAGAATCAGAATCAGAATCAGGTAAC
* *
26126039 AGAATCAAAATCAGAATCAGAATCA-G-AATT
1 AGAATCAGAATCAGAATCAGAATCAGGTAA-C
* *
26126069 AGGTAA-CAAAATCAGAATCAGTATCAGGTAAC
1 A-G-AATCAGAATCAGAATCAGAATCAGGTAAC
*
26126101 AGAATCAGAATCAGTATCAGGTAA-CA-G-AATC
1 AGAATCAGAATCAGAATCA-G-AATCAGGTAA-C
* *
26126132 AGAATCAGAACCAGAATCAGAATTAGGTAAC
1 AGAATCAGAATCAGAATCAGAATCAGGTAAC
* *
26126163 AGAATCAGAATCAGAATCAGTATTAGGTAAC
1 AGAATCAGAATCAGAATCAGAATCAGGTAAC
*
26126194 AGAATTAGAATCAGAAT
1 AGAATCAGAATCAGAAT
26126211 GTGAATGCAA
Statistics
Matches: 146, Mismatches: 14, Indels: 24
0.79 0.08 0.13
Matches are distributed among these distances:
29 3 0.02
30 8 0.05
31 123 0.84
32 9 0.06
33 3 0.02
ACGTcount: A:0.48, C:0.14, G:0.19, T:0.19
Consensus pattern (31 bp):
AGAATCAGAATCAGAATCAGAATCAGGTAAC
Found at i:26126083 original size:25 final size:25
Alignment explanation
Indices: 26126050--26126210 Score: 153
Period size: 25 Copynumber: 6.7 Consensus size: 25
26126040 GAATCAAAAT
*
26126050 CAGAATCAGAATCAGAATTAGGTAA
1 CAGAATCAGAATCAGAATCAGGTAA
* *
26126075 CAAAATCAGAATCAGTATCAGGTAA
1 CAGAATCAGAATCAGAATCAGGTAA
*
26126100 CAGAATCAGAATCAGTATCAGGTAA
1 CAGAATCAGAATCAGAATCAGGTAA
26126125 CAGAATCAGAATCAGAA-C------
1 CAGAATCAGAATCAGAATCAGGTAA
*
26126143 CAGAATCAGAATTAGGTAA-CA-G-AA
1 CAGAATCAGAATCA-G-AATCAGGTAA
* *
26126167 TCAGAATCAGAATCAGTATTAGGTAA
1 -CAGAATCAGAATCAGAATCAGGTAA
*
26126193 CAGAATTAGAATCAGAAT
1 CAGAATCAGAATCAGAAT
26126211 GTGAATGCAA
Statistics
Matches: 115, Mismatches: 11, Indels: 20
0.79 0.08 0.14
Matches are distributed among these distances:
18 13 0.11
19 1 0.01
20 3 0.03
23 1 0.01
24 3 0.03
25 92 0.80
26 2 0.02
ACGTcount: A:0.47, C:0.14, G:0.19, T:0.20
Consensus pattern (25 bp):
CAGAATCAGAATCAGAATCAGGTAA
Found at i:26126204 original size:37 final size:36
Alignment explanation
Indices: 26126100--26126210 Score: 142
Period size: 37 Copynumber: 3.2 Consensus size: 36
26126090 TATCAGGTAA
*
26126100 CAGAATCAGAATCAGTATCAGGTAACAGAATCAGAAT
1 CAGAATCAGAATCAGTATTAGGTAACAGAAT-AGAAT
* *
26126137 CAGAACCAGAATCAGAATTAGGTAAC-----AGAAT
1 CAGAATCAGAATCAGTATTAGGTAACAGAATAGAAT
26126168 CAGAATCAGAATCAGTATTAGGTAACAGAATTAGAAT
1 CAGAATCAGAATCAGTATTAGGTAACAGAA-TAGAAT
26126205 CAGAAT
1 CAGAAT
26126211 GTGAATGCAA
Statistics
Matches: 63, Mismatches: 5, Indels: 12
0.79 0.06 0.15
Matches are distributed among these distances:
31 29 0.46
37 34 0.54
ACGTcount: A:0.47, C:0.14, G:0.19, T:0.20
Consensus pattern (36 bp):
CAGAATCAGAATCAGTATTAGGTAACAGAATAGAAT
Found at i:26126376 original size:27 final size:26
Alignment explanation
Indices: 26126328--26126387 Score: 66
Period size: 27 Copynumber: 2.3 Consensus size: 26
26126318 ACGAGGCTAC
*
26126328 CAGATATTGTGACAAAGTCACCAGATA
1 CAGATATTGTGACAAAGCCACCAGA-A
* * *
26126355 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACAAAGCCACCAGAA
*
26126381 CATATAT
1 CAGATAT
26126388 ATATATACAT
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 7 0.25
27 21 0.75
ACGTcount: A:0.37, C:0.20, G:0.20, T:0.23
Consensus pattern (26 bp):
CAGATATTGTGACAAAGCCACCAGAA
Found at i:26126696 original size:27 final size:27
Alignment explanation
Indices: 26126666--26126916 Score: 253
Period size: 27 Copynumber: 9.3 Consensus size: 27
26126656 GGGGTAAAAT
*
26126666 GGTAATTTTACCCTACAAGGGTATCTC
1 GGTAATTTTACCCTACAAGGGTATTTC
* *
26126693 GGTAATTCTACCTTAC-AGGAGTATTTC
1 GGTAATTTTACCCTACAAGG-GTATTTC
* * *
26126720 AGTAATTCTACCGTAC-AGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTC
26126746 GGT-ATTTCTACCCTACAAGGGTATTTC
1 GGTAATTT-TACCCTACAAGGGTATTTC
* * *
26126773 GGTAATTCTACCCTACAGGGGTATTTT
1 GGTAATTTTACCCTACAAGGGTATTTC
* * *
26126800 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTC
* *
26126827 GGT-ATTTCTACCCTACAGGGGTATTTT
1 GGTAATTT-TACCCTACAAGGGTATTTC
*
26126854 GGT-ATTTCTACCCTACAAGGGTATTTT
1 GGTAATTT-TACCCTACAAGGGTATTTC
* *
26126881 GG-CATTTCTACCCTACGAGGGTATTTC
1 GGTAATTT-TACCCTACAAGGGTATTTC
*
26126908 GATAATTTT
1 GGTAATTTT
26126917 GTAAATTAAG
Statistics
Matches: 196, Mismatches: 21, Indels: 14
0.85 0.09 0.06
Matches are distributed among these distances:
25 3 0.02
26 22 0.11
27 164 0.84
28 7 0.04
ACGTcount: A:0.24, C:0.20, G:0.20, T:0.37
Consensus pattern (27 bp):
GGTAATTTTACCCTACAAGGGTATTTC
Found at i:26126822 original size:54 final size:54
Alignment explanation
Indices: 26126666--26126914 Score: 306
Period size: 54 Copynumber: 4.6 Consensus size: 54
26126656 GGGGTAAAAT
* * * *
26126666 GGTAATTTTACCCTACAAGGGTATCTCGGTAATTCTACCTTAC-AGGAGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAAGG-GTATTTC
* * *
26126720 AGTAATTCTACCGTACA-GGGTATTTCGGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTC
** *
26126773 GGTAATTCTACCCTACAGGGGTATTTTAGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTC
* * * *
26126827 GGTATTTCTACCCTACAGGGGTATTTTGGTATTTCTACCCTACAAGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTC
* * *
26126881 GGCATTTCTACCCTAC-GAGGGTATTTCGATAATT
1 GGTAATTCTACCCTACAG-GGGTATTTCGGTAATT
26126915 TTGTAAATTA
Statistics
Matches: 171, Mismatches: 21, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
53 45 0.26
54 126 0.74
ACGTcount: A:0.24, C:0.20, G:0.20, T:0.37
Consensus pattern (54 bp):
GGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTC
Found at i:26126864 original size:81 final size:81
Alignment explanation
Indices: 26126670--26126908 Score: 340
Period size: 81 Copynumber: 3.0 Consensus size: 81
26126660 TAAAATGGTA
* * * * *
26126670 ATTT-TACCCTACAAGGGTATCTCGGTAATTCTACCTTACAGGAGTATTTCAGTAATTCTACCGT
1 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTTAGTAATTCTACCCT
26126734 ACA-GGGTATTTCGGT
66 ACAGGGGTATTTCGGT
26126749 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTTAGTAATTCTACCCT
1 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTTAGTAATTCTACCCT
26126814 ACAGGGGTATTTCGGT
66 ACAGGGGTATTTCGGT
* * * * * * *
26126830 ATTTCTACCCTACAGGGGTATTTTGGTATTTCTACCCTACAAGGGTATTTTGGCATTTCTACCCT
1 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTTAGTAATTCTACCCT
26126895 AC-GAGGGTATTTCG
66 ACAG-GGGTATTTCG
26126909 ATAATTTTGT
Statistics
Matches: 145, Mismatches: 12, Indels: 4
0.90 0.07 0.02
Matches are distributed among these distances:
79 4 0.03
80 59 0.41
81 82 0.57
ACGTcount: A:0.23, C:0.21, G:0.20, T:0.36
Consensus pattern (81 bp):
ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTTAGTAATTCTACCCT
ACAGGGGTATTTCGGT
Found at i:26126928 original size:27 final size:26
Alignment explanation
Indices: 26126898--26126970 Score: 74
Period size: 27 Copynumber: 2.7 Consensus size: 26
26126888 CTACCCTACG
26126898 AGGGTATTTCGATAATTTTGTAAATTA
1 AGGGTATTT-GATAATTTTGTAAATTA
** * *
26126925 AGGGTAAAATGGTAATTCTGTAAATTA
1 AGGGT-ATTTGATAATTTTGTAAATTA
*
26126952 AGGGTACTTTGGTAATTTT
1 AGGGTA-TTTGATAATTTT
26126971 ACAAGTCGAG
Statistics
Matches: 37, Mismatches: 7, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
26 1 0.03
27 34 0.92
28 2 0.05
ACGTcount: A:0.33, C:0.04, G:0.22, T:0.41
Consensus pattern (26 bp):
AGGGTATTTGATAATTTTGTAAATTA
Found at i:26126982 original size:27 final size:26
Alignment explanation
Indices: 26126952--26127401 Score: 468
Period size: 27 Copynumber: 16.7 Consensus size: 26
26126942 CTGTAAATTA
* * *
26126952 AGGGTACTTTGGTAATTTTACAAGTCG
1 AGGGTATTTTGGTAATTTTACAA-ACC
*** ** *
26126979 AGGGTATTTCAATAATTTTACAGGTCG
1 AGGGTATTTTGGTAATTTTACA-AACC
** * *
26127006 AGGGTATTTCAGTAATTTCACAAATC
1 AGGGTATTTTGGTAATTTTACAAACC
*
26127032 AGGGGTATTTTGGTAATTTTACAAACT
1 A-GGGTATTTTGGTAATTTTACAAACC
*
26127059 AGAGGTATTTTGATAATTTTACAAACC
1 AG-GGTATTTTGGTAATTTTACAAACC
*
26127086 AGGGGTATTTTGGTAATTTTACAAACT
1 A-GGGTATTTTGGTAATTTTACAAACC
* * * *
26127113 AGGGGTATTTTAGTATTTTTATAAACTA
1 A-GGGTATTTTGGTAATTTTACAAAC-C
26127141 AGGGTATTTTGGTAATTTTACAAACC
1 AGGGTATTTTGGTAATTTTACAAACC
**
26127167 AGGGGTATTTTGGTAATTTTGTAAACC
1 A-GGGTATTTTGGTAATTTTACAAACC
26127194 AAGGGTATTTTGGTAATTTTACAAACC
1 -AGGGTATTTTGGTAATTTTACAAACC
* *
26127221 AGGGGTATTTTGGTGATTTTATAAACC
1 A-GGGTATTTTGGTAATTTTACAAACC
*
26127248 AAGGGTATTTTAGTAATTTTACAAACC
1 -AGGGTATTTTGGTAATTTTACAAACC
**
26127275 AGGGGTATTTTGGTAATTTTGTAAACC
1 A-GGGTATTTTGGTAATTTTACAAACC
*
26127302 AAGGGTATTTTGTTAATTTTACAAACC
1 -AGGGTATTTTGGTAATTTTACAAACC
* *
26127329 AGAGGTATTTTGGTGATTTTATAAACC
1 AG-GGTATTTTGGTAATTTTACAAACC
* *
26127356 AAGGGTATTTTAGTAATTTTACCAACC
1 -AGGGTATTTTGGTAATTTTACAAACC
26127383 AGGGGTATTTTGGTAATTT
1 A-GGGTATTTTGGTAATTT
26127402 GGTAAACTAA
Statistics
Matches: 358, Mismatches: 51, Indels: 28
0.82 0.12 0.06
Matches are distributed among these distances:
26 8 0.02
27 343 0.96
28 7 0.02
ACGTcount: A:0.30, C:0.09, G:0.21, T:0.40
Consensus pattern (26 bp):
AGGGTATTTTGGTAATTTTACAAACC
Found at i:26127408 original size:54 final size:54
Alignment explanation
Indices: 26127007--26127401 Score: 574
Period size: 54 Copynumber: 7.3 Consensus size: 54
26126997 TACAGGTCGA
** * * * * *
26127007 GGGTATTTCAGTAATTTCACAAATCAGGGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTGGTAATTTTACAAACCAG
* * * * *
26127061 AGGTATTTTGATAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTGGTAATTTTACAAACCAG
* * *
26127115 GGGTATTTTAGTATTTTTATAAACTAAGGGTATTTTGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTGGTAATTTTACAAACCAG
*
26127169 GGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTGGTAATTTTACAAACCAG
* *
26127223 GGGTATTTTGGTGATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTGGTAATTTTACAAACCAG
* *
26127277 GGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTGTTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTGGTAATTTTACAAACCAG
* * * *
26127331 AGGTATTTTGGTGATTTTATAAACCAAGGGTATTTTAGTAATTTTACCAACCAG
1 GGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTGGTAATTTTACAAACCAG
26127385 GGGTATTTTGGTAATTT
1 GGGTATTTTGGTAATTT
26127402 GGTAAACTAA
Statistics
Matches: 308, Mismatches: 33, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
54 308 1.00
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.40
Consensus pattern (54 bp):
GGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTGGTAATTTTACAAACCAG
Found at i:26133023 original size:27 final size:27
Alignment explanation
Indices: 26132979--26133171 Score: 181
Period size: 27 Copynumber: 7.1 Consensus size: 27
26132969 GGTCGTAATG
* * *
26132979 ACCCCCGATTTATGAAATTATTGAAAT
1 ACCCCCGATTTGTAAAATTACTGAAAT
* *
26133006 ACCCTCGATTTCTAAAATTACTGAAAT
1 ACCCCCGATTTGTAAAATTACTGAAAT
*
26133033 ACCCCCGATTTGTAAAATTA-TCAAAAT
1 ACCCCCGATTTGTAAAATTACT-GAAAT
*** * **
26133060 ACCCTTAATTTGTGAAATTACCAAAAT
1 ACCCCCGATTTGTAAAATTACTGAAAT
* * **
26133087 ACCCTCGATTTGTGAAATTACCAAAAT
1 ACCCCCGATTTGTAAAATTACTGAAAT
* * *
26133114 ACCCCCAACTTGTAAATTTACTGAAAT
1 ACCCCCGATTTGTAAAATTACTGAAAT
* *
26133141 ACCCCCAATTTGTAAACTTACTGAAAT
1 ACCCCCGATTTGTAAAATTACTGAAAT
26133168 ACCC
1 ACCC
26133172 TTGTAGGGTA
Statistics
Matches: 141, Mismatches: 23, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
26 1 0.01
27 140 0.99
ACGTcount: A:0.38, C:0.23, G:0.08, T:0.31
Consensus pattern (27 bp):
ACCCCCGATTTGTAAAATTACTGAAAT
Found at i:26133061 original size:54 final size:54
Alignment explanation
Indices: 26132979--26133156 Score: 203
Period size: 54 Copynumber: 3.3 Consensus size: 54
26132969 GGTCGTAATG
* * ** * *
26132979 ACCCCCGATTTATGAAATTATTGAAATACCCTCGATTTCTAAAATTACTGAAAT
1 ACCCCCGATTTGTAAAATTATCAAAATACCCTCAATTTGTAAAATTACTGAAAT
* * **
26133033 ACCCCCGATTTGTAAAATTATCAAAATACCCTTAATTTGTGAAATTACCAAAAT
1 ACCCCCGATTTGTAAAATTATCAAAATACCCTCAATTTGTAAAATTACTGAAAT
* * * * * *
26133087 ACCCTCGATTTGTGAAATTACCAAAATACCCCCAACTTGTAAATTTACTGAAAT
1 ACCCCCGATTTGTAAAATTATCAAAATACCCTCAATTTGTAAAATTACTGAAAT
*
26133141 ACCCCCAATTTGTAAA
1 ACCCCCGATTTGTAAA
26133157 CTTACTGAAA
Statistics
Matches: 101, Mismatches: 23, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
54 101 1.00
ACGTcount: A:0.38, C:0.22, G:0.08, T:0.31
Consensus pattern (54 bp):
ACCCCCGATTTGTAAAATTATCAAAATACCCTCAATTTGTAAAATTACTGAAAT
Found at i:26133127 original size:81 final size:81
Alignment explanation
Indices: 26133002--26133172 Score: 202
Period size: 81 Copynumber: 2.1 Consensus size: 81
26132992 GAAATTATTG
** * * **
26133002 AAATACCCTCGATTTCTAAAATTACTGAAATACCCCCGATTTGTAAAATTA-TCAAAATACCCTT
1 AAATACCCTCGATTTCTAAAATTACCAAAATACCCCCAACTTGTAAAATTACT-AAAATACCCCC
26133066 AATTTGTGAAA-TTACCA
65 AATTTGT-AAACTTACCA
* * * *
26133083 AAATACCCTCGATTTGTGAAATTACCAAAATACCCCCAACTTGTAAATTTACTGAAATACCCCCA
1 AAATACCCTCGATTTCTAAAATTACCAAAATACCCCCAACTTGTAAAATTACTAAAATACCCCCA
**
26133148 ATTTGTAAACTTACTG
66 ATTTGTAAACTTACCA
26133164 AAATACCCT
1 AAATACCCT
26133173 TGTAGGGTAA
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
80 3 0.04
81 72 0.95
82 1 0.01
ACGTcount: A:0.39, C:0.23, G:0.08, T:0.30
Consensus pattern (81 bp):
AAATACCCTCGATTTCTAAAATTACCAAAATACCCCCAACTTGTAAAATTACTAAAATACCCCCA
ATTTGTAAACTTACCA
Found at i:26133234 original size:26 final size:26
Alignment explanation
Indices: 26133169--26133241 Score: 76
Period size: 26 Copynumber: 2.8 Consensus size: 26
26133159 TACTGAAATA
*
26133169 CCCTTGTAGGGTAAAATGACTGTTTTC
1 CCCTTGT-GGGTAAAATGACTATTTTC
*** * *
26133196 CCCTAAAGAGTAAAATGACTATTTTG
1 CCCTTGTGGGTAAAATGACTATTTTC
26133222 CCCTTGTGGGT-AAATGACTA
1 CCCTTGTGGGTAAAATGACTA
26133242 ACTTAGGCTA
Statistics
Matches: 36, Mismatches: 10, Indels: 2
0.75 0.21 0.04
Matches are distributed among these distances:
25 9 0.25
26 23 0.64
27 4 0.11
ACGTcount: A:0.29, C:0.18, G:0.21, T:0.33
Consensus pattern (26 bp):
CCCTTGTGGGTAAAATGACTATTTTC
Found at i:26137093 original size:40 final size:40
Alignment explanation
Indices: 26136953--26137096 Score: 157
Period size: 40 Copynumber: 3.6 Consensus size: 40
26136943 TCTCGATATC
* * * *
26136953 TCGCACACTAAGTTCCGTACATAGCT-GAAGCTATCTCAAA
1 TCGCACACTAAGTGCCATATATAG-TAGAAGCTATCTCGAA
* * * *
26136993 TCGCACATTAAGTGCCACACATAGTAGAAGCTATCTCGATC
1 TCGCACACTAAGTGCCATATATAGTAGAAGCTATCTCGA-A
* *
26137034 TCGCACACTAAGTGCCATATATAGTCGAAGCTATGC-GGAA
1 TCGCACACTAAGTGCCATATATAGTAGAAGCTAT-CTCGAA
26137074 TCGCACACTAAGTGCCATATATA
1 TCGCACACTAAGTGCCATATATA
26137097 TATAGCTGAA
Statistics
Matches: 89, Mismatches: 12, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
39 1 0.01
40 55 0.62
41 32 0.36
42 1 0.01
ACGTcount: A:0.33, C:0.26, G:0.17, T:0.24
Consensus pattern (40 bp):
TCGCACACTAAGTGCCATATATAGTAGAAGCTATCTCGAA
Found at i:26146687 original size:41 final size:39
Alignment explanation
Indices: 26146587--26146808 Score: 241
Period size: 40 Copynumber: 5.5 Consensus size: 39
26146577 TCGATATCTT
* * * *
26146587 GCACACTAAGTGCCGTATATAGCCGAAGCTATCACAAATC
1 GCACACTAAGTGCCATATATAGCAGAAGCTATCTC-GATC
*
26146627 GCACAC-AAGTGCCATATATAGCAAAAGCTATCTCGATC
1 GCACACTAAGTGCCATATATAGCAGAAGCTATCTCGATC
*
26146665 TTGCACACTAAGTGCCATATATAGTC-GAAGCTATTTCGGATC
1 --GCACACTAAGTGCCATATATAG-CAGAAGCTATCTC-GATC
*
26146707 GCACACTAAGTGCCATATATAGCAGAAGCCATCTCGATCTC
1 GCACACTAAGTGCCATATATAGCAGAAGCTATCTCGA--TC
** * *
26146748 GCACACTAAGTGTGATATATAGCCGAAGCTATGTCGAATC
1 GCACACTAAGTGCCATATATAGCAGAAGCTATCTCG-ATC
* *
26146788 ACGCACTAAGTGCCATATATA
1 GCACACTAAGTGCCATATATA
26146809 TAGCTGAATT
Statistics
Matches: 155, Mismatches: 18, Indels: 18
0.81 0.09 0.09
Matches are distributed among these distances:
38 3 0.02
39 27 0.17
40 62 0.40
41 57 0.37
42 6 0.04
ACGTcount: A:0.33, C:0.25, G:0.18, T:0.24
Consensus pattern (39 bp):
GCACACTAAGTGCCATATATAGCAGAAGCTATCTCGATC
Found at i:26146766 original size:81 final size:81
Alignment explanation
Indices: 26146582--26146808 Score: 314
Period size: 81 Copynumber: 2.8 Consensus size: 81
26146572 AATTCTCGAT
* *
26146582 ATCTTGCACACTAAGTGCCG-TATATAGCCGAAGCTATCACAAATCGCACAC-AAGTGCCATATA
1 ATCTTGCACACTAAGTG-CGATATATAGCCGAAGCTATCTCGAATCGCACACTAAGTGCCATATA
*
26146645 TAGCAAAAGCTATCTCG
65 TAGCAAAAGCCATCTCG
* * * *
26146662 ATCTTGCACACTAAGTGCCATATATAGTCGAAGCTATTTCGGATCGCACACTAAGTGCCATATAT
1 ATCTTGCACACTAAGTGCGATATATAGCCGAAGCTATCTCGAATCGCACACTAAGTGCCATATAT
*
26146727 AGCAGAAGCCATCTCG
66 AGCAAAAGCCATCTCG
* * * * *
26146743 ATCTCGCACACTAAGTGTGATATATAGCCGAAGCTATGTCGAATCACGCACTAAGTGCCATATAT
1 ATCTTGCACACTAAGTGCGATATATAGCCGAAGCTATCTCGAATCGCACACTAAGTGCCATATAT
26146808 A
66 A
26146809 TAGCTGAATT
Statistics
Matches: 129, Mismatches: 16, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
79 1 0.01
80 43 0.33
81 85 0.66
ACGTcount: A:0.33, C:0.25, G:0.18, T:0.25
Consensus pattern (81 bp):
ATCTTGCACACTAAGTGCGATATATAGCCGAAGCTATCTCGAATCGCACACTAAGTGCCATATAT
AGCAAAAGCCATCTCG
Found at i:26149673 original size:48 final size:47
Alignment explanation
Indices: 26149605--26149825 Score: 193
Period size: 48 Copynumber: 4.7 Consensus size: 47
26149595 ATGTGCAATC
* *
26149605 CCATGTAAGACCATGTCTGGGACATGGCTTTGGCATCGATATGTAATT
1 CCATGTAAGACCATG-CTGGGACATGGCATTGGCATCGATATGTGATT
* * *
26149653 TCATGTAAGACCATAGCTGGG-C-T---ATCGACATCGATATGTGA-T
1 CCATGTAAGACCAT-GCTGGGACATGGCATTGGCATCGATATGTGATT
** * **
26149695 CTTGTGTAAGACCATGGCTGGGACATGGCATTGGCATCGATCTACGATT
1 C-CATGTAAGACCAT-GCTGGGACATGGCATTGGCATCGATATGTGATT
* * *
26149744 CCATGTAACACCATGTCGGGGACATGGCATTGGCATCGATATGTGATC
1 CCATGTAAGACCATG-CTGGGACATGGCATTGGCATCGATATGTGATT
* * * *
26149792 CCATGAAAGACCATATCCGGGATATGGCATTGGC
1 CCATGTAAGACCAT-GCTGGGACATGGCATTGGC
26149826 GTCCTACCTT
Statistics
Matches: 136, Mismatches: 27, Indels: 20
0.74 0.15 0.11
Matches are distributed among these distances:
42 1 0.01
43 31 0.23
44 1 0.01
45 1 0.01
46 1 0.01
47 2 0.01
48 96 0.71
49 3 0.02
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.27
Consensus pattern (47 bp):
CCATGTAAGACCATGCTGGGACATGGCATTGGCATCGATATGTGATT
Found at i:26152607 original size:120 final size:120
Alignment explanation
Indices: 26152394--26152681 Score: 488
Period size: 120 Copynumber: 2.4 Consensus size: 120
26152384 TGAATGATAT
* * * *
26152394 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTTTATTCGGGCTAAGACCCGAAGGCATTTG
1 CCGGGTTAAGACCCGAAGGCATTTATGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCATTTA
26152459 TGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAC
66 TGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAC
26152514 CCGGGTTAAGACCCGAAGGCATTTATGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCATTTA
1 CCGGGTTAAGACCCGAAGGCATTTATGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCATTTA
26152579 TGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAC
66 TGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAC
* * * * *
26152634 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATATCC-GGCTAA
1 CCGGGTTAAGACCCGAAGGCATTTATGCTAGTGATTTTATCCGGGCTAA
26152682 ATTCCGAAGA
Statistics
Matches: 159, Mismatches: 9, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
119 6 0.04
120 153 0.96
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (120 bp):
CCGGGTTAAGACCCGAAGGCATTTATGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCATTTA
TGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAC
Found at i:26152660 original size:40 final size:40
Alignment explanation
Indices: 26152390--26152661 Score: 368
Period size: 40 Copynumber: 6.8 Consensus size: 40
26152380 CATTTGAATG
* * *
26152390 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-T
* *
26152430 TTATTCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
*
26152470 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
* * * *
26152510 ATACCCGGGTTAAGACCCGAAGGCATTTATGCTAG-TGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-T
* *
26152550 TTATCCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
*
26152590 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
* * *
26152630 ATACCCGGGTTAAGACCCGAAGGCAATTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGC
26152662 TTGTGGTTAT
Statistics
Matches: 206, Mismatches: 23, Indels: 6
0.88 0.10 0.03
Matches are distributed among these distances:
39 2 0.01
40 198 0.96
41 6 0.03
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
Found at i:26154826 original size:13 final size:13
Alignment explanation
Indices: 26154808--26154835 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
26154798 GGAATGTGTT
26154808 TCGTCCGAGGCTA
1 TCGTCCGAGGCTA
26154821 TCGTCCGAGGCTA
1 TCGTCCGAGGCTA
26154834 TC
1 TC
26154836 ATGTGTAAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.14, C:0.32, G:0.29, T:0.25
Consensus pattern (13 bp):
TCGTCCGAGGCTA
Found at i:26158503 original size:40 final size:41
Alignment explanation
Indices: 26158442--26158733 Score: 341
Period size: 40 Copynumber: 7.3 Consensus size: 41
26158432 CATTTGAATG
* * *
26158442 ATATCCGGGCTAAGTCTCGAAGGCATTTATGCTAG-TGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGATT
*
26158482 TTATCCGGGCTAAGACCCGAAGGCATTTGTG-TGAGTTGA-T
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCT-AGTTGATT
* *
26158522 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGATT
* * *
26158562 ATACCCGGGTTAAGACCCGAAGGCATTTATGCTAG-TGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGATT
* **
26158602 TTATCCGGGCTAAGACCCGAAGGCATTTGTGCGGGTTGA-T
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGATT
* *
26158642 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGATT
* * * * *
26158682 ATACCCGGGTTAAGACCCGAAGGCAATTGTGCTTG-TGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGATT
26158722 ATATCC-GGCTAA
1 ATATCCGGGCTAA
26158734 ATTCTGAAGA
Statistics
Matches: 217, Mismatches: 27, Indels: 17
0.83 0.10 0.07
Matches are distributed among these distances:
39 10 0.05
40 201 0.93
41 6 0.03
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (41 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGATT
Found at i:26158659 original size:120 final size:120
Alignment explanation
Indices: 26158459--26158733 Score: 480
Period size: 120 Copynumber: 2.3 Consensus size: 120
26158449 GGCTAAGTCT
*
26158459 CGAAGGCATTTATGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCATTTGTGTGAGTTGATAT
1 CGAAGGCATTTATGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATAT
26158524 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATACCCGGGTTAAGACC
66 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATACCCGGGTTAAGACC
*
26158579 CGAAGGCATTTATGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCATTTGTGCGGGTTGATAT
1 CGAAGGCATTTATGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATAT
26158644 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATACCCGGGTTAAGACC
66 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATACCCGGGTTAAGACC
* * * * *
26158699 CGAAGGCAATTGTGCTTGTGGTTATATCC-GGCTAA
1 CGAAGGCATTTATGCTAGTGATTTTATCCGGGCTAA
26158734 ATTCTGAAGA
Statistics
Matches: 148, Mismatches: 7, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
119 6 0.04
120 142 0.96
ACGTcount: A:0.24, C:0.20, G:0.29, T:0.28
Consensus pattern (120 bp):
CGAAGGCATTTATGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATAT
ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATACCCGGGTTAAGACC
Found at i:26175465 original size:47 final size:47
Alignment explanation
Indices: 26175411--26175727 Score: 528
Period size: 47 Copynumber: 6.7 Consensus size: 47
26175401 TTAGGATTCT
* *
26175411 ATGTGATGGATGTGAACA-TGCATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCG
26175458 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
26175505 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
26175552 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
26175599 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * * * *
26175646 ATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * *
26175693 ACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
26175728 TCCCGAAGGG
Statistics
Matches: 257, Mismatches: 12, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
46 1 0.00
47 256 1.00
ACGTcount: A:0.32, C:0.09, G:0.31, T:0.29
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:26175902 original size:37 final size:38
Alignment explanation
Indices: 26175844--26175921 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 38
26175834 ATCCGAGCTC
* * *
26175844 TAAAGACCCGATGACTACGTGTGGGGATTTTGTCCGGG
1 TAAAGACCCGATAACTACGTGTGGAGATTATGTCCGGG
*
26175882 TAAA-ACCCGATAACTTCGTGTGGAGATTATGTCCGGG
1 TAAAGACCCGATAACTACGTGTGGAGATTATGTCCGGG
26175919 TAA
1 TAA
26175922 GACTTCGTAA
Statistics
Matches: 36, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
37 32 0.89
38 4 0.11
ACGTcount: A:0.26, C:0.18, G:0.29, T:0.27
Consensus pattern (38 bp):
TAAAGACCCGATAACTACGTGTGGAGATTATGTCCGGG
Found at i:26179706 original size:21 final size:20
Alignment explanation
Indices: 26179667--26179706 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
26179657 TGGTCCGTAA
*
26179667 GCCCATTGGGCCCAGTTTTG
1 GCCCATTGGGCCCACTTTTG
*
26179687 GCCCATTGAGGCCCTCTTTT
1 GCCCATTG-GGCCCACTTTT
26179707 TCCGAAGTAC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.10, C:0.33, G:0.25, T:0.33
Consensus pattern (20 bp):
GCCCATTGGGCCCACTTTTG
Found at i:26184437 original size:32 final size:32
Alignment explanation
Indices: 26184399--26184462 Score: 128
Period size: 32 Copynumber: 2.0 Consensus size: 32
26184389 TATACTTAGG
26184399 TTATTTTGTAAGTATCTCAAAGTTCTTAATTA
1 TTATTTTGTAAGTATCTCAAAGTTCTTAATTA
26184431 TTATTTTGTAAGTATCTCAAAGTTCTTAATTA
1 TTATTTTGTAAGTATCTCAAAGTTCTTAATTA
26184463 AACATTAATT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.31, C:0.09, G:0.09, T:0.50
Consensus pattern (32 bp):
TTATTTTGTAAGTATCTCAAAGTTCTTAATTA
Found at i:26186954 original size:47 final size:48
Alignment explanation
Indices: 26186842--26187052 Score: 275
Period size: 47 Copynumber: 4.4 Consensus size: 48
26186832 ATGTGTAATG
* * * *
26186842 TGGTGTTAAGTGGATATACCAC-GATTACACATATTTATACATGTAACG
1 TGGTGCTAAGTGGATATGCCACAG-TTACACATATTGATACATGTAACA
* *
26186890 TGGTGCTAAGTGGATATGCCACAGTTACATATATTGATTCAT-TAACA
1 TGGTGCTAAGTGGATATGCCACAGTTACACATATTGATACATGTAACA
* * *
26186937 TGGTGGTAAGTGGATATGCCACAGTTACATATATTGATTCAT-TAACA
1 TGGTGCTAAGTGGATATGCCACAGTTACACATATTGATACATGTAACA
* * * *
26186984 TGGTGGTAAGTGGATATACCACAATTACACATATTGATACATGTAACG
1 TGGTGCTAAGTGGATATGCCACAGTTACACATATTGATACATGTAACA
26187032 TGGTGCTAAGTGGATATGCCA
1 TGGTGCTAAGTGGATATGCCA
26187053 TGGTTAAACA
Statistics
Matches: 147, Mismatches: 14, Indels: 4
0.89 0.08 0.02
Matches are distributed among these distances:
47 88 0.60
48 58 0.39
49 1 0.01
ACGTcount: A:0.32, C:0.14, G:0.21, T:0.32
Consensus pattern (48 bp):
TGGTGCTAAGTGGATATGCCACAGTTACACATATTGATACATGTAACA
Found at i:26187045 original size:95 final size:96
Alignment explanation
Indices: 26186835--26187052 Score: 280
Period size: 95 Copynumber: 2.3 Consensus size: 96
26186825 TGGTTATATG
* * * * *
26186835 TGTAATGTGGTGTTAAGTGGATATACCACGATTACACATATTTATACATGTAACGTGGTGCTAAG
1 TGTAACGTGGTGCTAAGTGGATATGCCACGATTACACATATTGATACATGTAACATGGTGCTAAG
* * * *
26186900 TGGATATGCCACAGTTACATATATTGATTCA
66 TGGATATACCACAATTACACATATTGATACA
* * * * *
26186931 T-TAACATGGTGGTAAGTGGATATGCCAC-AGTTACATATATTGATTCAT-TAACATGGTGGTAA
1 TGTAACGTGGTGCTAAGTGGATATGCCACGA-TTACACATATTGATACATGTAACATGGTGCTAA
26186993 GTGGATATACCACAATTACACATATTGATACA
65 GTGGATATACCACAATTACACATATTGATACA
26187025 TGTAACGTGGTGCTAAGTGGATATGCCA
1 TGTAACGTGGTGCTAAGTGGATATGCCA
26187053 TGGTTAAACA
Statistics
Matches: 105, Mismatches: 15, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
94 42 0.40
95 62 0.59
96 1 0.01
ACGTcount: A:0.32, C:0.14, G:0.22, T:0.33
Consensus pattern (96 bp):
TGTAACGTGGTGCTAAGTGGATATGCCACGATTACACATATTGATACATGTAACATGGTGCTAAG
TGGATATACCACAATTACACATATTGATACA
Found at i:26187064 original size:38 final size:38
Alignment explanation
Indices: 26187022--26187103 Score: 137
Period size: 38 Copynumber: 2.2 Consensus size: 38
26187012 ACATATTGAT
* *
26187022 ACATGTAACGTGGTGCTAAGTGGATATGCCATGGTTAA
1 ACATGTAACATGGTGCTAAGTGGATATGCCACGGTTAA
*
26187060 ACATGTAACATGGTGCTAAGTGGATATGCCACGGTTAT
1 ACATGTAACATGGTGCTAAGTGGATATGCCACGGTTAA
26187098 ACATGT
1 ACATGT
26187104 TAATTTGAAA
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
38 41 1.00
ACGTcount: A:0.29, C:0.15, G:0.27, T:0.29
Consensus pattern (38 bp):
ACATGTAACATGGTGCTAAGTGGATATGCCACGGTTAA
Found at i:26193898 original size:43 final size:43
Alignment explanation
Indices: 26193818--26193963 Score: 129
Period size: 43 Copynumber: 3.4 Consensus size: 43
26193808 AGATATCGTC
* * * * *
26193818 TAAGACCGTGTCTGGGAC-GCAGGCCTCGAT-TGAGATTTACGTA
1 TAAGACCATGTCTGGGACAG-AGGCATCGATAT-TGATTTACATG
**
26193861 TAAGACCATGTCTGGGACATCGGCATC-ATATCTGATTT-CATG
1 TAAGACCATGTCTGGGACAGAGGCATCGATAT-TGATTTACATG
* * *
26193903 TAAGACCCTGTCTAGGACAGAGGCATCGATATTGAATTACATG
1 TAAGACCATGTCTGGGACAGAGGCATCGATATTGATTTACATG
* *
26193946 TAAGACCACGTCCGGGAC
1 TAAGACCATGTCTGGGAC
26193964 GTCAGTGTTG
Statistics
Matches: 82, Mismatches: 17, Indels: 8
0.77 0.16 0.07
Matches are distributed among these distances:
42 32 0.39
43 50 0.61
ACGTcount: A:0.27, C:0.22, G:0.25, T:0.25
Consensus pattern (43 bp):
TAAGACCATGTCTGGGACAGAGGCATCGATATTGATTTACATG
Found at i:26193921 original size:42 final size:43
Alignment explanation
Indices: 26193861--26193953 Score: 118
Period size: 42 Copynumber: 2.2 Consensus size: 43
26193851 GATTTACGTA
* ** *
26193861 TAAGACCATGTCTGGGACATCGGCATC-ATATCTG-ATTTCATG
1 TAAGACCATGTCTAGGACAGAGGCATCGATAT-TGAATTACATG
*
26193903 TAAGACCCTGTCTAGGACAGAGGCATCGATATTGAATTACATG
1 TAAGACCATGTCTAGGACAGAGGCATCGATATTGAATTACATG
26193946 TAAGACCA
1 TAAGACCA
26193954 CGTCCGGGAC
Statistics
Matches: 43, Mismatches: 6, Indels: 3
0.83 0.12 0.06
Matches are distributed among these distances:
42 25 0.58
43 18 0.42
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.27
Consensus pattern (43 bp):
TAAGACCATGTCTAGGACAGAGGCATCGATATTGAATTACATG
Found at i:26211363 original size:40 final size:40
Alignment explanation
Indices: 26211279--26211463 Score: 209
Period size: 40 Copynumber: 4.7 Consensus size: 40
26211269 TCGAATGATG
* *
26211279 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
*
26211318 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
26211359 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* * *
26211398 TCTGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTGCT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
26211437 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
26211464 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 15, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
39 35 0.28
40 79 0.64
41 10 0.08
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:26211418 original size:79 final size:81
Alignment explanation
Indices: 26211279--26211461 Score: 223
Period size: 79 Copynumber: 2.3 Consensus size: 81
26211269 TCGAATGATG
* *
26211279 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATT
26211343 TGTGCGAGTTACTA-A
66 TGTGCGAGTTACTATA
* * * **
26211358 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCTGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGAT-CCGAAGGCA
*
26211420 TTTGTGCGAGTTGCTATA
64 TTTGTGCGAGTTACTATA
* *
26211438 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
26211462 TGAACGAGTA
Statistics
Matches: 89, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.65
80 30 0.34
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.26
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGTTACTATA
Found at i:26211485 original size:79 final size:79
Alignment explanation
Indices: 26211280--26211486 Score: 219
Period size: 79 Copynumber: 2.6 Consensus size: 79
26211270 CGAATGATGT
* *
26211280 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGT-GACTATATCCGGACTAAGATCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTAG-CTATATCCGG-TTAAGATCCGAAGGCATT
*
26211343 TGTGCGAGTTACTAATT
63 TGTGCGAGTTACTAATA
* * *
26211360 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTA-CTAAATCTGGGTTAAG-TCCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TAGCTATATC-CGGTTAAGAT-CCGAAGGCATT
*
26211422 TGTGCGAGTTGCT-ATAA
63 TGTGCGAGTTACTAAT-A
* **
26211439 CCGGGCTATGTCCCGAAGGCATTTGAACGAGTAGCTATATCCGGTTAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGCTATATCCGGTTAA
26211487 ATTCCGATGT
Statistics
Matches: 106, Mismatches: 13, Indels: 17
0.78 0.10 0.12
Matches are distributed among these distances:
78 3 0.03
79 61 0.58
80 42 0.40
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (79 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGCTATATCCGGTTAAGATCCGAAGGCATTTGT
GCGAGTTACTAATA
Found at i:26217549 original size:15 final size:15
Alignment explanation
Indices: 26217517--26217545 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
26217507 TTATTTTGTG
26217517 TTTATTATGTGTGAA
1 TTTATTATGTGTGAA
26217532 TTTA-TATGTGTGAA
1 TTTATTATGTGTGAA
26217546 ATTTTCATGC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.28, C:0.00, G:0.21, T:0.52
Consensus pattern (15 bp):
TTTATTATGTGTGAA
Found at i:26218081 original size:15 final size:15
Alignment explanation
Indices: 26218061--26218091 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
26218051 AATTATGAAA
26218061 GATATGTTTTGGATT
1 GATATGTTTTGGATT
*
26218076 GATATGTTTTGTATT
1 GATATGTTTTGGATT
26218091 G
1 G
26218092 GAATTTTTGA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.19, C:0.00, G:0.26, T:0.55
Consensus pattern (15 bp):
GATATGTTTTGGATT
Found at i:26220038 original size:46 final size:48
Alignment explanation
Indices: 26219966--26220068 Score: 147
Period size: 46 Copynumber: 2.2 Consensus size: 48
26219956 GACAGGACAG
* * * *
26219966 GACAGAAATGAGCCATGTAAGTCCATATCA-GT-TATATGGCTTTGGA
1 GACAGGAATGAGCCATGTAAGCCCATATCATATATATATGGCATTGGA
*
26220012 GACAGGAATGAGCCATGTAAGCCCATATTATATATATATGGCATTGGA
1 GACAGGAATGAGCCATGTAAGCCCATATCATATATATATGGCATTGGA
26220060 GACAGGAAT
1 GACAGGAAT
26220069 AATTCATGTA
Statistics
Matches: 50, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
46 27 0.54
47 1 0.02
48 22 0.44
ACGTcount: A:0.35, C:0.15, G:0.24, T:0.26
Consensus pattern (48 bp):
GACAGGAATGAGCCATGTAAGCCCATATCATATATATATGGCATTGGA
Found at i:26220689 original size:13 final size:13
Alignment explanation
Indices: 26220671--26220698 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
26220661 ACATATTATA
26220671 AATATTTTGTGTT
1 AATATTTTGTGTT
26220684 AATATTTTGTGTT
1 AATATTTTGTGTT
26220697 AA
1 AA
26220699 AAATAATAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.29, C:0.00, G:0.14, T:0.57
Consensus pattern (13 bp):
AATATTTTGTGTT
Found at i:26222167 original size:40 final size:40
Alignment explanation
Indices: 26222119--26222404 Score: 443
Period size: 40 Copynumber: 7.2 Consensus size: 40
26222109 GGACTAAGAT
* *
26222119 CCGAAGGCATTTGTGCTGGTTACTATATCTGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
26222159 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
* *
26222199 CCGAAGGCATTTGTGCTAGTTACTATAACCGGACTAAGAT-
1 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAG-TC
* *
26222239 CCGAAGGCATTTGTGCTAGTTACTATAACCGGACTAAGAT-
1 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAG-TC
26222279 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
*
26222319 CTGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
* * *
26222359 CCGAAGGCATTTGTGCGAGTTGCTATATCC-GGCTAAATC
1 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
26222398 CCGAAGG
1 CCGAAGG
26222405 TACTTGGGTT
Statistics
Matches: 233, Mismatches: 11, Indels: 5
0.94 0.04 0.02
Matches are distributed among these distances:
39 16 0.07
40 216 0.93
41 1 0.00
ACGTcount: A:0.24, C:0.21, G:0.25, T:0.29
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
Found at i:26226597 original size:28 final size:28
Alignment explanation
Indices: 26226520--26226691 Score: 269
Period size: 27 Copynumber: 6.2 Consensus size: 28
26226510 TTGGCGCTAC
26226520 GTGTGCGAGTTTGACTATGTAGCACTAA
1 GTGTGCGAGTTTGACTATGTAGCACTAA
*
26226548 GTGTGCGA-ATTGACTATGTAGCACTAA
1 GTGTGCGAGTTTGACTATGTAGCACTAA
26226575 GTGTGCGAGTTTGACTATGTAGCACTAA
1 GTGTGCGAGTTTGACTATGTAGCACTAA
26226603 GTGTGCGAG-TTGACTATGTAGCACTAA
1 GTGTGCGAGTTTGACTATGTAGCACTAA
*
26226630 GTGTGCGAGTTTGATTATGTAGCACTAA
1 GTGTGCGAGTTTGACTATGTAGCACTAA
* * * *
26226658 GTGTGCGAG-TTGATTATATAGAACTGA
1 GTGTGCGAGTTTGACTATGTAGCACTAA
26226685 GTGTGCG
1 GTGTGCG
26226692 GACTTAATAT
Statistics
Matches: 136, Mismatches: 6, Indels: 5
0.93 0.04 0.03
Matches are distributed among these distances:
27 75 0.55
28 61 0.45
ACGTcount: A:0.26, C:0.13, G:0.30, T:0.32
Consensus pattern (28 bp):
GTGTGCGAGTTTGACTATGTAGCACTAA
Found at i:26226604 original size:55 final size:55
Alignment explanation
Indices: 26226520--26226691 Score: 290
Period size: 55 Copynumber: 3.1 Consensus size: 55
26226510 TTGGCGCTAC
*
26226520 GTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAATTGACTATGTAGCACTAA
1 GTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGTAGCACTAA
26226575 GTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGTAGCACTAA
1 GTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGTAGCACTAA
* * * * *
26226630 GTGTGCGAGTTTGATTATGTAGCACTAAGTGTGCGAGTTGATTATATAGAACTGA
1 GTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGTAGCACTAA
26226685 GTGTGCG
1 GTGTGCG
26226692 GACTTAATAT
Statistics
Matches: 111, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
55 111 1.00
ACGTcount: A:0.26, C:0.13, G:0.30, T:0.32
Consensus pattern (55 bp):
GTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGTAGCACTAA
Found at i:26234599 original size:27 final size:27
Alignment explanation
Indices: 26234555--26234698 Score: 216
Period size: 27 Copynumber: 5.3 Consensus size: 27
26234545 TTGGCGCTAC
26234555 GTGTGCGAGTTTGACTATGTAGCACTAA
1 GTGTGCGAG-TTGACTATGTAGCACTAA
*
26234583 GTGTGCGAATTGACTATGTAGCACTAA
1 GTGTGCGAGTTGACTATGTAGCACTAA
26234610 GTGTGCGAGTTGACTATGTAGCACTAA
1 GTGTGCGAGTTGACTATGTAGCACTAA
*
26234637 GTGTGCGAGTTTGATTATGTAGCACTAA
1 GTGTGCGAG-TTGACTATGTAGCACTAA
* * * *
26234665 GTGTGCGAGTTGATTATATAGGACTGA
1 GTGTGCGAGTTGACTATGTAGCACTAA
26234692 GTGTGCG
1 GTGTGCG
26234699 GACTTAATAT
Statistics
Matches: 109, Mismatches: 6, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
27 75 0.69
28 34 0.31
ACGTcount: A:0.25, C:0.12, G:0.31, T:0.32
Consensus pattern (27 bp):
GTGTGCGAGTTGACTATGTAGCACTAA
Found at i:26234657 original size:55 final size:54
Alignment explanation
Indices: 26234555--26234698 Score: 216
Period size: 55 Copynumber: 2.6 Consensus size: 54
26234545 TTGGCGCTAC
26234555 GTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAATTGACTATGTAGCACTAA
1 GTGTGCGAG-TTGACTATGTAGCACTAAGTGTGCGAATTGACTATGTAGCACTAA
* *
26234610 GTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGATTATGTAGCACTAA
1 GTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGA-ATTGACTATGTAGCACTAA
* * * *
26234665 GTGTGCGAGTTGATTATATAGGACTGAGTGTGCG
1 GTGTGCGAGTTGACTATGTAGCACTAAGTGTGCG
26234699 GACTTAATAT
Statistics
Matches: 82, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
54 26 0.32
55 56 0.68
ACGTcount: A:0.25, C:0.12, G:0.31, T:0.32
Consensus pattern (54 bp):
GTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAATTGACTATGTAGCACTAA
Found at i:26237148 original size:45 final size:45
Alignment explanation
Indices: 26237093--26237190 Score: 189
Period size: 45 Copynumber: 2.2 Consensus size: 45
26237083 TTGTTGAATG
26237093 AAAT-AGATATAAATAATAGTTTATTTCCTTTGATCATTGAATAT
1 AAATGAGATATAAATAATAGTTTATTTCCTTTGATCATTGAATAT
26237137 AAATGAGATATAAATAATAGTTTATTTCCTTTGATCATTGAATAT
1 AAATGAGATATAAATAATAGTTTATTTCCTTTGATCATTGAATAT
26237182 AAATGAGAT
1 AAATGAGAT
26237191 GTTAAGCATA
Statistics
Matches: 53, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
44 4 0.08
45 49 0.92
ACGTcount: A:0.42, C:0.06, G:0.11, T:0.41
Consensus pattern (45 bp):
AAATGAGATATAAATAATAGTTTATTTCCTTTGATCATTGAATAT
Found at i:26241962 original size:25 final size:24
Alignment explanation
Indices: 26241934--26242017 Score: 71
Period size: 25 Copynumber: 3.4 Consensus size: 24
26241924 CTGGAGGCCT
*
26241934 AGCCTCTTTTAAT-AACTGGGGCAAA
1 AGCC-CTTTTAATAAACTGGGAC-AA
*
26241959 AGCCCTTTTTGATAAACTGGGACAA
1 AGCCC-TTTTAATAAACTGGGACAA
** * *
26241984 AGCCCTTTTCGGTAAACTGGGGCAT
1 AGCCCTTTT-AATAAACTGGGACAA
26242009 AGCCCTTTT
1 AGCCCTTTT
26242018 TGCACTTCCT
Statistics
Matches: 51, Mismatches: 5, Indels: 6
0.82 0.08 0.10
Matches are distributed among these distances:
24 5 0.10
25 38 0.75
26 8 0.16
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (24 bp):
AGCCCTTTTAATAAACTGGGACAA
Found at i:26241984 original size:26 final size:25
Alignment explanation
Indices: 26241947--26242019 Score: 101
Period size: 25 Copynumber: 2.9 Consensus size: 25
26241937 CTCTTTTAAT
26241947 AACTGGGGCAAAAGCCCTTTTTGATA
1 AACTGGGGC-AAAGCCCTTTTTGATA
* * *
26241973 AACTGGGACAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTTGATA
*
26241998 AACTGGGGCATAGCCCTTTTTG
1 AACTGGGGCAAAGCCCTTTTTG
26242020 CACTTCCTCC
Statistics
Matches: 41, Mismatches: 6, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
25 33 0.80
26 8 0.20
ACGTcount: A:0.26, C:0.22, G:0.25, T:0.27
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTTGATA
Found at i:26242087 original size:9 final size:9
Alignment explanation
Indices: 26242073--26242129 Score: 69
Period size: 9 Copynumber: 5.9 Consensus size: 9
26242063 ACATCATGTG
26242073 CATATCATA
1 CATATCATA
*
26242082 CATATCATGTG
1 CATATCA--TA
26242093 CATATCATA
1 CATATCATA
26242102 CATATCATGA
1 CATATCAT-A
26242112 GCATATCATA
1 -CATATCATA
26242122 CATATCAT
1 CATATCAT
26242130 GTGCATATCA
Statistics
Matches: 42, Mismatches: 2, Indels: 8
0.81 0.04 0.15
Matches are distributed among these distances:
9 24 0.57
10 2 0.05
11 16 0.38
ACGTcount: A:0.39, C:0.21, G:0.07, T:0.33
Consensus pattern (9 bp):
CATATCATA
Found at i:26242088 original size:20 final size:20
Alignment explanation
Indices: 26242065--26242141 Score: 145
Period size: 20 Copynumber: 3.9 Consensus size: 20
26242055 TTATGAATAC
26242065 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
26242085 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
26242105 ATCATGAGCATATCATACAT
1 ATCATGTGCATATCATACAT
26242125 ATCATGTGCATATCATA
1 ATCATGTGCATATCATA
26242142 TCAAAACCCA
Statistics
Matches: 55, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 55 1.00
ACGTcount: A:0.36, C:0.19, G:0.10, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:26242095 original size:40 final size:40
Alignment explanation
Indices: 26242051--26242135 Score: 120
Period size: 40 Copynumber: 2.1 Consensus size: 40
26242041 CCCAACCCAA
*
26242051 TGCATTATGAATAC-ATCATGTGCATATCATACATATCATG
1 TGCATTAT-AATACAATCATGAGCATATCATACATATCATG
*
26242091 TGCA-TATCATACATATCATGAGCATATCATACATATCATG
1 TGCATTATAATACA-ATCATGAGCATATCATACATATCATG
26242131 TGCAT
1 TGCAT
26242136 ATCATATCAA
Statistics
Matches: 40, Mismatches: 2, Indels: 5
0.85 0.04 0.11
Matches are distributed among these distances:
38 4 0.10
39 3 0.08
40 33 0.82
ACGTcount: A:0.35, C:0.19, G:0.12, T:0.34
Consensus pattern (40 bp):
TGCATTATAATACAATCATGAGCATATCATACATATCATG
Found at i:26242096 original size:11 final size:11
Alignment explanation
Indices: 26242065--26242140 Score: 74
Period size: 11 Copynumber: 7.5 Consensus size: 11
26242055 TTATGAATAC
26242065 ATCATGTGCAT
1 ATCATGTGCAT
*
26242076 ATCA--TACAT
1 ATCATGTGCAT
26242085 ATCATGTGCAT
1 ATCATGTGCAT
*
26242096 ATCA--TACAT
1 ATCATGTGCAT
*
26242105 ATCATGAGCAT
1 ATCATGTGCAT
*
26242116 ATCA--TACAT
1 ATCATGTGCAT
26242125 ATCATGTGCAT
1 ATCATGTGCAT
26242136 ATCAT
1 ATCAT
26242141 ATCAAAACCC
Statistics
Matches: 51, Mismatches: 8, Indels: 12
0.72 0.11 0.17
Matches are distributed among these distances:
9 23 0.45
11 28 0.55
ACGTcount: A:0.36, C:0.20, G:0.11, T:0.34
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:26246146 original size:15 final size:15
Alignment explanation
Indices: 26246126--26246155 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
26246116 ATTATGAAAT
26246126 ATATGTTTTGGATTG
1 ATATGTTTTGGATTG
*
26246141 ATATGTTTTGTATTG
1 ATATGTTTTGGATTG
26246156 GAATTTTTGA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.20, C:0.00, G:0.23, T:0.57
Consensus pattern (15 bp):
ATATGTTTTGGATTG
Found at i:26246822 original size:45 final size:42
Alignment explanation
Indices: 26246773--26246870 Score: 117
Period size: 41 Copynumber: 2.3 Consensus size: 42
26246763 ATCTAAGACG
* *
26246773 TTGGCATCGATATATGTGGTTACGTGTAAGACCATTTCTGGGACA
1 TTGGCATCGATAT-T-TGATT-CGTGTAAGACCATGTCTGGGACA
*
26246818 TTGGCATCG-TATTTGATTCGTGTAAGACCCTGTCTGGGACA
1 TTGGCATCGATATTTGATTCGTGTAAGACCATGTCTGGGACA
* *
26246859 GTGGCACCGATA
1 TTGGCATCGATA
26246871 CGAGATAGCA
Statistics
Matches: 47, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
41 28 0.60
42 6 0.13
43 1 0.02
44 3 0.06
45 9 0.19
ACGTcount: A:0.22, C:0.18, G:0.28, T:0.32
Consensus pattern (42 bp):
TTGGCATCGATATTTGATTCGTGTAAGACCATGTCTGGGACA
Found at i:26251366 original size:94 final size:91
Alignment explanation
Indices: 26251209--26251417 Score: 217
Period size: 94 Copynumber: 2.3 Consensus size: 91
26251199 GTGCTGACGC
*
26251209 CATGTCCCAGACATGGTCTTACAC-TGACACATTTCACAGCCGATGCATGTCCCAAACATGTCTT
1 CATGTCCCAGACAT-GTCTTACACTTGACACATCTCACAGCCGATGCATGTCCCAAACATGTCTT
* * **
26251273 ACACTGGCT-TACGTCCCGAGGCCAATG
65 ACAATGGCTCT-CATAACGAGGCCAATG
* * * * *
26251300 CATGTCCCAGACATGTCTTACACTTGCACTCGTCTCA-ATGCTGATGCCATGTCCTAGACATGGT
1 CATGTCCCAGACATGTCTTACACTTG-ACACATCTCACA-GCCGATG-CATGTCCCAAACAT-GT
* * *
26251364 CTTACAATGGCTCTCATAACGTGGGCGATG
62 CTTACAATGGCTCTCATAACGAGGCCAATG
*
26251394 CATGTACCAGACATGTCTTACACT
1 CATGTCCCAGACATGTCTTACACT
26251418 AGCCCACAAT
Statistics
Matches: 98, Mismatches: 14, Indels: 9
0.81 0.12 0.07
Matches are distributed among these distances:
90 9 0.09
91 17 0.17
92 13 0.13
93 12 0.12
94 46 0.47
95 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (91 bp):
CATGTCCCAGACATGTCTTACACTTGACACATCTCACAGCCGATGCATGTCCCAAACATGTCTTA
CAATGGCTCTCATAACGAGGCCAATG
Found at i:26258418 original size:33 final size:32
Alignment explanation
Indices: 26258381--26258486 Score: 125
Period size: 32 Copynumber: 3.4 Consensus size: 32
26258371 CAATATTAAT
26258381 CTGGGCCATAGCCCCTTACAGTAACAGAGTATA
1 CTGGGCC-TAGCCCCTTACAGTAACAGAGTATA
* *
26258414 CTGGGCCTAG-CCCATATCAGTATC--A--AT-
1 CTGGGCCTAGCCCCTTA-CAGTAACAGAGTATA
26258441 CTGGGCCATAGCCCCTTACAGTAACAGAGTATA
1 CTGGGCC-TAGCCCCTTACAGTAACAGAGTATA
26258474 CTGGGCCTAGCCC
1 CTGGGCCTAGCCC
26258487 ATATCAGTAT
Statistics
Matches: 61, Mismatches: 4, Indels: 17
0.74 0.05 0.21
Matches are distributed among these distances:
27 7 0.11
28 11 0.18
29 5 0.08
30 2 0.03
31 5 0.08
32 17 0.28
33 14 0.23
ACGTcount: A:0.26, C:0.30, G:0.22, T:0.22
Consensus pattern (32 bp):
CTGGGCCTAGCCCCTTACAGTAACAGAGTATA
Found at i:26258432 original size:60 final size:60
Alignment explanation
Indices: 26258352--26258552 Score: 293
Period size: 60 Copynumber: 3.4 Consensus size: 60
26258342 TTTAGTGTTA
*
26258352 ACTGGGCCTTAGCCCATATCAATATTAATCTGGGCCATAGCCCCTTACAGTAACAGAGTAT
1 ACTGGGCC-TAGCCCATATCAATATCAATCTGGGCCATAGCCCCTTACAGTAACAGAGTAT
*
26258413 ACTGGGCCTAGCCCATATCAGTATCAATCTGGGCCATAGCCCCTTACAGTAACAGAGTAT
1 ACTGGGCCTAGCCCATATCAATATCAATCTGGGCCATAGCCCCTTACAGTAACAGAGTAT
*
26258473 ACTGGGCCTAGCCCATATCAGTATCAATCTGGGCCATAG-CCCTATACAAGT--C-GAGATAT
1 ACTGGGCCTAGCCCATATCAATATCAATCTGGGCCATAGCCCCT-TAC-AGTAACAGAG-TAT
* *
26258532 ATTGGGCCTTGCCCATATCAA
1 ACTGGGCCTAGCCCATATCAA
26258553 CACAGTTGGG
Statistics
Matches: 132, Mismatches: 5, Indels: 8
0.91 0.03 0.06
Matches are distributed among these distances:
58 3 0.02
59 26 0.20
60 92 0.70
61 11 0.08
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.25
Consensus pattern (60 bp):
ACTGGGCCTAGCCCATATCAATATCAATCTGGGCCATAGCCCCTTACAGTAACAGAGTAT
Found at i:26258585 original size:19 final size:20
Alignment explanation
Indices: 26258542--26258587 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
26258532 ATTGGGCCTT
26258542 GCCCATATCAACACAGTTGG
1 GCCCATATCAACACAGTTGG
* *
26258562 GCCCATTTCAATACAGTT-G
1 GCCCATATCAACACAGTTGG
26258581 GCCCATA
1 GCCCATA
26258588 ACAGAACAGT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
19 7 0.30
20 16 0.70
ACGTcount: A:0.28, C:0.30, G:0.17, T:0.24
Consensus pattern (20 bp):
GCCCATATCAACACAGTTGG
Found at i:26261212 original size:111 final size:110
Alignment explanation
Indices: 26261029--26261234 Score: 313
Period size: 111 Copynumber: 1.9 Consensus size: 110
26261019 CAGACAGGGT
* * * * *
26261029 CTTACTCGTACACATATATCGGATTCATATATCAATGCCAACATATTAAAGTGGTCTTACTCGCA
1 CTTACTCGCACACATATATCAGAGTCAAATATCAATGCCAACATATTAAAGTGGACTTACTCGCA
26261094 CAAATATATCAGAGTCACATATCGATGCCAACGTATTAACGTGGA
66 CAAATATATCAGAGTCACATATCGATGCCAACGTATTAACGTGGA
* ** *
26261139 CTTACTCGCACATATATATCAGAGTCAAATATGGATGCCAACGTATTAAACGTGGACTTACTCGC
1 CTTACTCGCACACATATATCAGAGTCAAATATCAATGCCAACATATTAAA-GTGGACTTACTCGC
*
26261204 ACATATATATCAGAGTCACATATCGATGCCA
65 ACAAATATATCAGAGTCACATATCGATGCCA
26261235 CATATACTTC
Statistics
Matches: 85, Mismatches: 10, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
110 42 0.49
111 43 0.51
ACGTcount: A:0.34, C:0.22, G:0.15, T:0.28
Consensus pattern (110 bp):
CTTACTCGCACACATATATCAGAGTCAAATATCAATGCCAACATATTAAAGTGGACTTACTCGCA
CAAATATATCAGAGTCACATATCGATGCCAACGTATTAACGTGGA
Found at i:26261216 original size:56 final size:56
Alignment explanation
Indices: 26261029--26261234 Score: 299
Period size: 55 Copynumber: 3.7 Consensus size: 56
26261019 CAGACAGGGT
* * * * * * * *
26261029 CTTACTCGTACACATATATCGGATTCATATATCAATGCCAACATATTAAA-GTGGT
1 CTTACTCGCACATATATATCAGAGTCACATATCGATGCCAACGTATTAAACGTGGA
*
26261084 CTTACTCGCACAAATATATCAGAGTCACATATCGATGCCAACGTATT-AACGTGGA
1 CTTACTCGCACATATATATCAGAGTCACATATCGATGCCAACGTATTAAACGTGGA
* *
26261139 CTTACTCGCACATATATATCAGAGTCAAATATGGATGCCAACGTATTAAACGTGGA
1 CTTACTCGCACATATATATCAGAGTCACATATCGATGCCAACGTATTAAACGTGGA
26261195 CTTACTCGCACATATATATCAGAGTCACATATCGATGCCA
1 CTTACTCGCACATATATATCAGAGTCACATATCGATGCCA
26261235 CATATACTTC
Statistics
Matches: 136, Mismatches: 13, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
54 2 0.01
55 88 0.65
56 46 0.34
ACGTcount: A:0.34, C:0.22, G:0.15, T:0.28
Consensus pattern (56 bp):
CTTACTCGCACATATATATCAGAGTCACATATCGATGCCAACGTATTAAACGTGGA
Found at i:26262860 original size:29 final size:29
Alignment explanation
Indices: 26262808--26262875 Score: 82
Period size: 29 Copynumber: 2.3 Consensus size: 29
26262798 ATGATCAACC
** * **
26262808 ATCCCTTTTCATAGTTGATGGTCGTCACT
1 ATCCCTTTTCATAGTCAATAGTCGAAACT
26262837 ATCCCTTTTCATAGTCAATAGTCGAAACT
1 ATCCCTTTTCATAGTCAATAGTCGAAACT
*
26262866 ATCCTTTTTC
1 ATCCCTTTTC
26262876 TTTAATCGAT
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
29 33 1.00
ACGTcount: A:0.22, C:0.25, G:0.12, T:0.41
Consensus pattern (29 bp):
ATCCCTTTTCATAGTCAATAGTCGAAACT
Found at i:26269601 original size:29 final size:29
Alignment explanation
Indices: 26269568--26269656 Score: 80
Period size: 29 Copynumber: 3.2 Consensus size: 29
26269558 ATCAATGCCA
26269568 TGCCTTGACATGGTCTTACATGATTTCCT
1 TGCCTTGACATGGTCTTACATGATTTCCT
* ** * *
26269597 TGCCTT-ATA-GAACTTATCA--A-TGCCA
1 TGCCTTGACATGGTCTTA-CATGATTTCCT
*
26269622 TGCCTTGGCATGGTCTTACATGATTTCCT
1 TGCCTTGACATGGTCTTACATGATTTCCT
26269651 TGCCTT
1 TGCCTT
26269657 ATAGAACTTA
Statistics
Matches: 43, Mismatches: 11, Indels: 12
0.65 0.17 0.18
Matches are distributed among these distances:
25 9 0.21
26 4 0.09
27 10 0.23
28 5 0.12
29 15 0.35
ACGTcount: A:0.19, C:0.25, G:0.17, T:0.39
Consensus pattern (29 bp):
TGCCTTGACATGGTCTTACATGATTTCCT
Found at i:26269634 original size:54 final size:54
Alignment explanation
Indices: 26269444--26269705 Score: 348
Period size: 54 Copynumber: 4.9 Consensus size: 54
26269434 TTTCCTTTTT
* * * * * * *
26269444 GAACTTACCATTGCCATGTCTTGACATGGTCTTACGTGGTATCTTTGCCTTATA
1 GAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATATCCTTGCCTTATA
* * **
26269498 -AACTCAACAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATA
1 GAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATATCC-TTGCCTTATA
* * *
26269551 TTAACTTATCAATGCCATGCCTTGACATGGTCTTACATGATTTCCTTGCCTTATA
1 -GAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATATCCTTGCCTTATA
*
26269606 GAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATTTCCTTGCCTTATA
1 GAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATATCCTTGCCTTATA
*
26269660 GAACTTATCAATGTCATGCCTTGGCATGGTCTTACATGATATCCTT
1 GAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATATCCTT
26269706 ATCTTACCAA
Statistics
Matches: 186, Mismatches: 18, Indels: 8
0.88 0.08 0.04
Matches are distributed among these distances:
52 1 0.01
53 43 0.23
54 96 0.52
55 44 0.24
56 2 0.01
ACGTcount: A:0.23, C:0.24, G:0.17, T:0.37
Consensus pattern (54 bp):
GAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATATCCTTGCCTTATA
Found at i:26269832 original size:47 final size:46
Alignment explanation
Indices: 26269733--26269892 Score: 171
Period size: 45 Copynumber: 3.4 Consensus size: 46
26269723 GTTCCAAACA
* ** *
26269733 TGGTCTTACATGGTATCCTTGTCTTAGTGCCAATGCCACATCTTGATG
1 TGGTCTTACATGGTATCCTTGTC--AATGCCAATGCCATGTCTTGACG
*
26269781 TGGTCTTACATGG-AGTCCTTAGTCAATGCCGATGCCATGTCTTGACG
1 TGGTCTTACATGGTA-TCCTT-GTCAATGCCAATGCCATGTCTTGACG
* * ** * *
26269828 TGGTCTTACACGGGATCCTTG-CCTTACCAATGCCATGTCTTGACA
1 TGGTCTTACATGGTATCCTTGTCAATGCCAATGCCATGTCTTGACG
26269873 TGGTCTTACATGGTATCCTT
1 TGGTCTTACATGGTATCCTT
26269893 AACCGTCAAT
Statistics
Matches: 96, Mismatches: 13, Indels: 9
0.81 0.11 0.08
Matches are distributed among these distances:
45 37 0.39
46 1 0.01
47 36 0.38
48 19 0.20
49 3 0.03
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.35
Consensus pattern (46 bp):
TGGTCTTACATGGTATCCTTGTCAATGCCAATGCCATGTCTTGACG
Found at i:26269946 original size:44 final size:44
Alignment explanation
Indices: 26269897--26269981 Score: 118
Period size: 44 Copynumber: 1.9 Consensus size: 44
26269887 ATCCTTAACC
* *
26269897 GTCAATTCCTCCTTAAATGCCATGTTATGAA-CATGGAATTTTCT
1 GTCAATTCCTCCTTAAATGCCATGGTA-CAACCATGGAATTTTCT
* *
26269941 GTCAATTCTTCCTTAATTGCCATGGTACAACCATGGAATTT
1 GTCAATTCCTCCTTAAATGCCATGGTACAACCATGGAATTT
26269982 GAGATATCAA
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
43 2 0.06
44 34 0.94
ACGTcount: A:0.27, C:0.21, G:0.14, T:0.38
Consensus pattern (44 bp):
GTCAATTCCTCCTTAAATGCCATGGTACAACCATGGAATTTTCT
Found at i:26270564 original size:30 final size:30
Alignment explanation
Indices: 26270519--26270579 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
26270509 TCCCTAACTC
* *
26270519 AAACTTTTTCAAAATTACAATTTTGCCCCT
1 AAACCTTTGCAAAATTACAATTTTGCCCCT
**
26270549 AAACCTTTGCAAAATTATGATTTTGCCCCT
1 AAACCTTTGCAAAATTACAATTTTGCCCCT
26270579 A
1 A
26270580 GGCTTGGAAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.33, C:0.23, G:0.07, T:0.38
Consensus pattern (30 bp):
AAACCTTTGCAAAATTACAATTTTGCCCCT
Found at i:26273325 original size:27 final size:27
Alignment explanation
Indices: 26273295--26273446 Score: 214
Period size: 27 Copynumber: 5.6 Consensus size: 27
26273285 TTAGTTTACC
*
26273295 AAATTACCAAAATACCTCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
26273322 AAATTACCAAAATACCTCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
26273349 AAATTATCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
26273376 AAATTATCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
** *
26273403 AAATTACCAAAATACCCCTAATTTGTG
1 AAATTACCAAAATACCCCTGGTTTGTA
**
26273430 AAATTACTGAAATACCC
1 AAATTACCAAAATACCC
26273447 TCAACCTGTA
Statistics
Matches: 117, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 117 1.00
ACGTcount: A:0.39, C:0.20, G:0.09, T:0.32
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGGTTTGTA
Found at i:26273360 original size:54 final size:54
Alignment explanation
Indices: 26273295--26273502 Score: 220
Period size: 54 Copynumber: 3.9 Consensus size: 54
26273285 TTAGTTTACC
* * *
26273295 AAATTACCAAAATACCTCTGGTTTGTAAAATTACCAAAATACCTCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTAGTTTGTA
* *
26273349 AAATTATCAAAATACCCCTGGTTTGTAAAATTATCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTAGTTTGTA
** * ** ***
26273403 AAATTACCAAAATACCCCTAATTTGTGAAATTACTGAAATA-CCCTCAACCTGTA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCT-AGTTTGTA
*** * ** *
26273457 AAATTATTGAAATACCCTTGACTTGTAAAATTACCAAAGTACCCCT
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCT
26273503 GATTTACAGA
Statistics
Matches: 127, Mismatches: 25, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
53 4 0.03
54 119 0.94
55 4 0.03
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.31
Consensus pattern (54 bp):
AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTAGTTTGTA
Found at i:26273443 original size:81 final size:81
Alignment explanation
Indices: 26273295--26273507 Score: 225
Period size: 81 Copynumber: 2.6 Consensus size: 81
26273285 TTAGTTTACC
* * * * *
26273295 AAATTACCAAAATACCTCTGGTTTGTAAAATTACCAAAATACCTCTGGTTTGTAAAATTATCAAA
1 AAATTATCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTGATTTGTAAAATTATCAAA
****
26273360 ATACCC-CTGGTTTGTA
66 ATACCCTC-AACCTGTA
* * *
26273376 AAATTATCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTAATTTGTGAAATTA-CTGA
1 AAATTATCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTGATTTGTAAAATTATC-AA
26273440 AATACCCTCAACCTGTA
65 AATACCCTCAACCTGTA
** * * *
26273457 AAATTATTGAAATA-CCCTTGACTTGTAAAATTACCAAAGTACCCCTGATTT
1 AAATTATCAAAATACCCCTAG-TTTGTAAAATTACCAAAATACCCCTGATTT
26273508 ACAGAATTAC
Statistics
Matches: 111, Mismatches: 18, Indels: 6
0.82 0.13 0.04
Matches are distributed among these distances:
80 6 0.05
81 104 0.94
82 1 0.01
ACGTcount: A:0.38, C:0.20, G:0.09, T:0.32
Consensus pattern (81 bp):
AAATTATCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTGATTTGTAAAATTATCAAA
ATACCCTCAACCTGTA
Found at i:26273499 original size:27 final size:27
Alignment explanation
Indices: 26273295--26273557 Score: 190
Period size: 27 Copynumber: 9.7 Consensus size: 27
26273285 TTAGTTTACC
*
26273295 AAATTACCAAAATA-CCTCTGGTTTGTA
1 AAATTACCAAAATACCCT-TGATTTGTA
*
26273322 AAATTACCAAAATA-CCTCTGGTTTGTA
1 AAATTACCAAAATACCCT-TGATTTGTA
* * *
26273349 AAATTATCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCTTGATTTGTA
* *
26273376 AAATTATCAAAATACCCCT-AGTTTGTA
1 AAATTACCAAAATACCCTTGA-TTTGTA
* * *
26273403 AAATTACCAAAATACCCCTAATTTGTG
1 AAATTACCAAAATACCCTTGATTTGTA
** ** **
26273430 AAATTACTGAAATACCCTCAACCTGTA
1 AAATTACCAAAATACCCTTGATTTGTA
*** *
26273457 AAATTATTGAAATACCCTTGACTTGTA
1 AAATTACCAAAATACCCTTGATTTGTA
* * **
26273484 AAATTACCAAAGTACCCCTGATTTACA
1 AAATTACCAAAATACCCTTGATTTGTA
* * *** * **
26273511 GAATTACTATTTTACCCTCGATTTACA
1 AAATTACCAAAATACCCTTGATTTGTA
26273538 AAATTACCAAAATACCCTTG
1 AAATTACCAAAATACCCTTG
26273558 TAGGGTAGAA
Statistics
Matches: 196, Mismatches: 37, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
27 193 0.98
28 3 0.02
ACGTcount: A:0.38, C:0.21, G:0.09, T:0.32
Consensus pattern (27 bp):
AAATTACCAAAATACCCTTGATTTGTA
Found at i:26273572 original size:27 final size:27
Alignment explanation
Indices: 26273542--26273773 Score: 186
Period size: 27 Copynumber: 9.0 Consensus size: 27
26273532 TTTACAAAAT
*
26273542 TACCAAAATACCCTTGTAGGGTAGAAA
1 TACCGAAATACCCTTGTAGGGTAGAAA
26273569 TACCGAAATACCCTTGTAGGGTAGAAA
1 TACCGAAATACCCTTGTAGGGTAGAAA
**
26273596 TACCGAAATA-CC--G-A-AATACCGAAA
1 TACCGAAATACCCTTGTAGGGTA--GAAA
*
26273620 TACC------C-C-TGTAGGGTAGAAT
1 TACCGAAATACCCTTGTAGGGTAGAAA
** * *
26273639 TACTAAAATACCCCTGTAGGGTAGAAT
1 TACCGAAATACCCTTGTAGGGTAGAAA
*
26273666 TACCGAAATACCTTTGTAGGGTAGAAA
1 TACCGAAATACCCTTGTAGGGTAGAAA
* * *
26273693 TACCGAAATACCCCTCTAGGGTAGAAT
1 TACCGAAATACCCTTGTAGGGTAGAAA
* * *
26273720 TACTGAAATACCCCTGTAGGGTAGAAT
1 TACCGAAATACCCTTGTAGGGTAGAAA
* * *
26273747 TACTGAGATACCCTTGTGGGGTA-AAA
1 TACCGAAATACCCTTGTAGGGTAGAAA
26273773 T
1 T
26273774 TACCATTTTA
Statistics
Matches: 169, Mismatches: 22, Indels: 29
0.77 0.10 0.13
Matches are distributed among these distances:
18 1 0.01
19 7 0.04
20 1 0.01
21 2 0.01
22 2 0.01
23 1 0.01
24 9 0.05
25 1 0.01
26 6 0.04
27 139 0.82
ACGTcount: A:0.36, C:0.19, G:0.21, T:0.24
Consensus pattern (27 bp):
TACCGAAATACCCTTGTAGGGTAGAAA
Found at i:26273605 original size:8 final size:8
Alignment explanation
Indices: 26273592--26273623 Score: 64
Period size: 8 Copynumber: 4.0 Consensus size: 8
26273582 TTGTAGGGTA
26273592 GAAATACC
1 GAAATACC
26273600 GAAATACC
1 GAAATACC
26273608 GAAATACC
1 GAAATACC
26273616 GAAATACC
1 GAAATACC
26273624 CCTGTAGGGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 24 1.00
ACGTcount: A:0.50, C:0.25, G:0.12, T:0.12
Consensus pattern (8 bp):
GAAATACC
Found at i:26273605 original size:54 final size:54
Alignment explanation
Indices: 26273542--26273773 Score: 227
Period size: 54 Copynumber: 4.5 Consensus size: 54
26273532 TTTACAAAAT
* * *
26273542 TACCAAAATACCCTTGTAGGGTAGAAATACCGAAATACCCTTGTAGGGTAGAAA
1 TACCGAAATACCCCTGTAGGGTAGAAATACCGAAATACCCCTGTAGGGTAGAAA
*
26273596 TACCGAAATA--CC---------GAAATACCGAAATACCCCTGTAGGGTAGAAT
1 TACCGAAATACCCCTGTAGGGTAGAAATACCGAAATACCCCTGTAGGGTAGAAA
** * **
26273639 TACTAAAATACCCCTGTAGGGTAGAATTACCGAAATACCTTTGTAGGGTAGAAA
1 TACCGAAATACCCCTGTAGGGTAGAAATACCGAAATACCCCTGTAGGGTAGAAA
* * * *
26273693 TACCGAAATACCCCTCTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAGAAT
1 TACCGAAATACCCCTGTAGGGTAGAAATACCGAAATACCCCTGTAGGGTAGAAA
* * * *
26273747 TACTGAGATACCCTTGTGGGGTA-AAAT
1 TACCGAAATACCCCTGTAGGGTAGAAAT
26273774 TACCATTTTA
Statistics
Matches: 144, Mismatches: 23, Indels: 23
0.76 0.12 0.12
Matches are distributed among these distances:
43 37 0.26
45 2 0.01
52 1 0.01
53 3 0.02
54 101 0.70
ACGTcount: A:0.36, C:0.19, G:0.21, T:0.24
Consensus pattern (54 bp):
TACCGAAATACCCCTGTAGGGTAGAAATACCGAAATACCCCTGTAGGGTAGAAA
Found at i:26273648 original size:43 final size:43
Alignment explanation
Indices: 26273565--26273650 Score: 136
Period size: 43 Copynumber: 2.0 Consensus size: 43
26273555 TTGTAGGGTA
* *
26273565 GAAATACCGAAATACCCTTGTAGGGTAGAAATACCGAAATACC
1 GAAATACCGAAATACCCCTGTAGGGTAGAAATACCAAAATACC
* *
26273608 GAAATACCGAAATACCCCTGTAGGGTAGAATTACTAAAATACC
1 GAAATACCGAAATACCCCTGTAGGGTAGAAATACCAAAATACC
26273651 CCTGTAGGGT
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
43 39 1.00
ACGTcount: A:0.42, C:0.21, G:0.17, T:0.20
Consensus pattern (43 bp):
GAAATACCGAAATACCCCTGTAGGGTAGAAATACCAAAATACC
Found at i:26273774 original size:27 final size:27
Alignment explanation
Indices: 26273616--26273776 Score: 223
Period size: 27 Copynumber: 6.0 Consensus size: 27
26273606 CCGAAATACC
26273616 GAAATACCCCTGTAGGGTAGAATTACT
1 GAAATACCCCTGTAGGGTAGAATTACT
* *
26273643 AAAATACCCCTGTAGGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACT
** * *
26273670 GAAATACCTTTGTAGGGTAGAAATACC
1 GAAATACCCCTGTAGGGTAGAATTACT
*
26273697 GAAATACCCCTCTAGGGTAGAATTACT
1 GAAATACCCCTGTAGGGTAGAATTACT
26273724 GAAATACCCCTGTAGGGTAGAATTACT
1 GAAATACCCCTGTAGGGTAGAATTACT
* * * *
26273751 GAGATACCCTTGTGGGGTAAAATTAC
1 GAAATACCCCTGTAGGGTAGAATTAC
26273777 CATTTTACCC
Statistics
Matches: 118, Mismatches: 16, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 118 1.00
ACGTcount: A:0.34, C:0.19, G:0.22, T:0.25
Consensus pattern (27 bp):
GAAATACCCCTGTAGGGTAGAATTACT
Found at i:26273788 original size:81 final size:81
Alignment explanation
Indices: 26273608--26273773 Score: 271
Period size: 81 Copynumber: 2.1 Consensus size: 81
26273598 CCGAAATACC
*
26273608 GAAATACCGAAATACCCCTGTAGGGTAGAATTACTAAAATACCCCTGTAGGGTAGAATTACCGAA
1 GAAATACCGAAATACCCCTCTAGGGTAGAATTACTAAAATACCCCTGTAGGGTAGAATTACCGAA
*
26273673 ATACCTTTGTAGGGTA
66 ATACCCTTGTAGGGTA
* * *
26273689 GAAATACCGAAATACCCCTCTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAGAATTACTGAG
1 GAAATACCGAAATACCCCTCTAGGGTAGAATTACTAAAATACCCCTGTAGGGTAGAATTACCGAA
*
26273754 ATACCCTTGTGGGGTA
66 ATACCCTTGTAGGGTA
26273770 -AAAT
1 GAAAT
26273774 TACCATTTTA
Statistics
Matches: 79, Mismatches: 6, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
80 4 0.05
81 75 0.95
ACGTcount: A:0.35, C:0.19, G:0.22, T:0.25
Consensus pattern (81 bp):
GAAATACCGAAATACCCCTCTAGGGTAGAATTACTAAAATACCCCTGTAGGGTAGAATTACCGAA
ATACCCTTGTAGGGTA
Found at i:26275941 original size:43 final size:43
Alignment explanation
Indices: 26275880--26276084 Score: 305
Period size: 43 Copynumber: 4.9 Consensus size: 43
26275870 GAATATTCGG
* *
26275880 ATGATAACCGGGCTAAGTCCTGAAGGCATTTGTGTGAGTTACT
1 ATGATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
26275923 ATGATAATCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACT
1 ATGATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
26275966 ATGATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATGATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
26276009 AT-AT--TCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATGATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
26276049 AT-AT--CCGGGCTAAGTCCCGAAGGCAGTTGAGCGAGT
1 ATGATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
26276085 AGCTATATCC
Statistics
Matches: 154, Mismatches: 8, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
40 68 0.44
42 2 0.01
43 84 0.55
ACGTcount: A:0.25, C:0.19, G:0.29, T:0.27
Consensus pattern (43 bp):
ATGATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Done.