Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 82679320
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4050000 characters in sequence are not A, C, G, or T
File 86 of 255
Found at i:26276029 original size:40 final size:40
Alignment explanation
Indices: 26275888--26276110 Score: 279
Period size: 43 Copynumber: 5.5 Consensus size: 40
26275878 GGATGATAAC
* *
26275888 CGGGCTAAGTCCTGAAGGCATTTGTGTGAGTTACTATGATAAT
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT-AT--T
* *
26275931 CGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTATGATAAC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT-AT--T
26275974 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATT
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATT
*
26276014 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATT
* *
26276054 CGGGCTAAGTCCCGAAGGCAGTTGAGCGAG-TAGCTATA-T
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATT
* * *
26276093 CCGGCTAAATCCCAAAGG
1 CGGGCTAAGTCCCGAAGG
26276111 TACTTGGTTT
Statistics
Matches: 168, Mismatches: 11, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
39 17 0.10
40 72 0.43
42 2 0.01
43 77 0.46
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.26
Consensus pattern (40 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATT
Found at i:26283946 original size:43 final size:43
Alignment explanation
Indices: 26283885--26284089 Score: 305
Period size: 43 Copynumber: 4.9 Consensus size: 43
26283875 GAATATTCGG
*
26283885 ATGATAACCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACT
1 ATGATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* ** *
26283928 ATGATAACCGGGCCAAGTCTTGAAGGCATTTGTGTGAGTTACT
1 ATGATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
26283971 ATGATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATGATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
26284014 AT-AT--CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATGATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
26284054 AT-AT--CCGGGCTAAGTCCCGAAGGCAGTTGAGCGAGT
1 ATGATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
26284090 AGCTATATCC
Statistics
Matches: 153, Mismatches: 9, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
40 70 0.46
42 2 0.01
43 81 0.53
ACGTcount: A:0.25, C:0.20, G:0.29, T:0.26
Consensus pattern (43 bp):
ATGATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:26284033 original size:40 final size:40
Alignment explanation
Indices: 26283892--26284115 Score: 290
Period size: 40 Copynumber: 5.5 Consensus size: 40
26283882 CGGATGATAA
*
26283892 CCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTATGAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT-AT
* ** *
26283933 AACCGGGCCAAGTCTTGAAGGCATTTGTGTGAGTTACTATGAT
1 --CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT-AT
26283976 AACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 --CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
26284018 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
26284058 CCGGGCTAAGTCCCGAAGGCAGTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
26284098 CC-GACTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
26284116 TACTTGGTTT
Statistics
Matches: 169, Mismatches: 11, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
39 16 0.09
40 77 0.46
42 2 0.01
43 74 0.44
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:26284098 original size:80 final size:82
Alignment explanation
Indices: 26283885--26284115 Score: 299
Period size: 86 Copynumber: 2.8 Consensus size: 82
26283875 GAATATTCGG
* * **
26283885 ATGATAACCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTATGATAACCGGGCCAAGTCTTG
1 ATGAT-ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT-AT--CCGGGCTAAGTCCCG
*
26283950 AAGGCATTTGTGTGAGTTACT
62 AAGGCATTTGTGCGAGTTACT
26283971 ATGATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAG
1 ATGAT-ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAG
26284036 GCATTTGTGCGAGTTACT
65 GCATTTGTGCGAGTTACT
* * * *
26284054 AT-AT-CCGGGCTAAGTCCCGAAGGCAGTTGAGCGAG-TAGCTATATCC-GACTAAATCCCGAAG
1 ATGATACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCCGGGCTAAGTCCCGAAG
26284115 G
65 G
26284116 TACTTGGTTT
Statistics
Matches: 135, Mismatches: 9, Indels: 9
0.88 0.06 0.06
Matches are distributed among these distances:
79 16 0.12
80 37 0.27
82 2 0.01
83 34 0.25
85 2 0.01
86 44 0.33
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.26
Consensus pattern (82 bp):
ATGATACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGG
CATTTGTGCGAGTTACT
Found at i:26285507 original size:6 final size:6
Alignment explanation
Indices: 26285498--26285628 Score: 81
Period size: 6 Copynumber: 21.3 Consensus size: 6
26285488 TTGCATTCAC
* * *
26285498 ATTCTT ATTCTG ATTCT- ATTACGTG ATACTG ATTCTG ATTCTG -TTACCTA
1 ATTCTG ATTCTG ATTCTG ATT-C-TG ATTCTG ATTCTG ATTCTG ATT--CTG
* * * * *
26285548 ATTTTG ATTCTG ATTTTG ATTTTG ATTCTG CCA-CCTG ATTCTG ATTCTA
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG --ATTCTG ATTCTG ATTCTG
* *
26285597 ATTCTG ATTCTC ATTTTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG AT
26285629 AATGTTTCTT
Statistics
Matches: 97, Mismatches: 17, Indels: 22
0.71 0.12 0.16
Matches are distributed among these distances:
5 7 0.07
6 77 0.79
7 8 0.08
8 5 0.05
ACGTcount: A:0.20, C:0.17, G:0.13, T:0.50
Consensus pattern (6 bp):
ATTCTG
Found at i:26285538 original size:25 final size:25
Alignment explanation
Indices: 26285504--26285562 Score: 73
Period size: 25 Copynumber: 2.4 Consensus size: 25
26285494 TCACATTCTT
* *
26285504 ATTCTGATTCTATTACGTGATACTG
1 ATTCTGATTCTATTACCTAATACTG
* **
26285529 ATTCTGATTCTGTTACCTAATTTTG
1 ATTCTGATTCTATTACCTAATACTG
26285554 ATTCTGATT
1 ATTCTGATT
26285563 TTGATTTTGA
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 29 1.00
ACGTcount: A:0.22, C:0.15, G:0.14, T:0.49
Consensus pattern (25 bp):
ATTCTGATTCTATTACCTAATACTG
Found at i:26285568 original size:37 final size:37
Alignment explanation
Indices: 26285526--26285607 Score: 101
Period size: 37 Copynumber: 2.2 Consensus size: 37
26285516 TTACGTGATA
** * *
26285526 CTGATTCTGATTCTGTTACCTAATTTTGATTCTGATT
1 CTGATTCTGATTCTGCCACCTAATTCTGATTCTAATT
* * *
26285563 TTGATTTTGATTCTGCCACCTGATTCTGATTCTAATT
1 CTGATTCTGATTCTGCCACCTAATTCTGATTCTAATT
26285600 CTGATTCT
1 CTGATTCT
26285608 CATTTTGATT
Statistics
Matches: 36, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.18, C:0.18, G:0.13, T:0.50
Consensus pattern (37 bp):
CTGATTCTGATTCTGCCACCTAATTCTGATTCTAATT
Found at i:26292951 original size:49 final size:49
Alignment explanation
Indices: 26292887--26293111 Score: 263
Period size: 49 Copynumber: 4.5 Consensus size: 49
26292877 CTGGTACACA
* *
26292887 TAGTAGTCTGCACTTAGTGCTACACATGCGACCAATTATCCGGTACATG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACATG
* * ** * *
26292936 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACATG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACC-AATTATCCGGTACATG
* * * * * **
26292986 TAGTAGCTTGCACTTAGTACTACACA-CCTGATCAAAGTTATCGGGTATACA
1 TAGTAGCCTGCACTTAGTACTACACATGC-GA-CCAA-TTATCCGGTACATG
*
26293037 TAGTAGCCTGCACTTCGTACTACACATGCGACCAATTATCCGGTACATG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACATG
26293086 TAGTAGCCTGCACTTAGTACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
26293112 CGTGACCTCA
Statistics
Matches: 143, Mismatches: 28, Indels: 10
0.79 0.15 0.06
Matches are distributed among these distances:
49 64 0.45
50 44 0.31
51 34 0.24
52 1 0.01
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.28
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACATG
Found at i:26293375 original size:27 final size:27
Alignment explanation
Indices: 26293345--26293398 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 27
26293335 AGGTACAACC
* *
26293345 CATGTAATAGTAATTTAACATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
*
26293372 CATGTAACAATAATTTACCATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
26293399 TCACATGACA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.41, C:0.15, G:0.06, T:0.39
Consensus pattern (27 bp):
CATGTAACAATAATTTAACATTCAATT
Found at i:26299069 original size:14 final size:12
Alignment explanation
Indices: 26299037--26299066 Score: 51
Period size: 12 Copynumber: 2.4 Consensus size: 12
26299027 GTTTGAGCTC
26299037 TATAGTTTTATGA
1 TATA-TTTTATGA
26299050 TATATTTTATGA
1 TATATTTTATGA
26299062 TATAT
1 TATAT
26299067 ATTAACTTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 13 0.76
13 4 0.24
ACGTcount: A:0.33, C:0.00, G:0.10, T:0.57
Consensus pattern (12 bp):
TATATTTTATGA
Found at i:26299524 original size:25 final size:28
Alignment explanation
Indices: 26299472--26299525 Score: 69
Period size: 25 Copynumber: 2.0 Consensus size: 28
26299462 TTATCGCTCT
* *
26299472 TATGTGTTGAATGATCGATTTTGCATAA
1 TATGTGTTGAATGATCGATTATGAATAA
26299500 TATG-GTTGAAT-AT-GATTATGAATAA
1 TATGTGTTGAATGATCGATTATGAATAA
26299525 T
1 T
26299526 GCATGATGAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
25 11 0.46
26 2 0.08
27 7 0.29
28 4 0.17
ACGTcount: A:0.33, C:0.04, G:0.20, T:0.43
Consensus pattern (28 bp):
TATGTGTTGAATGATCGATTATGAATAA
Found at i:26302552 original size:17 final size:19
Alignment explanation
Indices: 26302523--26302560 Score: 62
Period size: 18 Copynumber: 2.1 Consensus size: 19
26302513 TTAGCATTCT
26302523 TACCAAGAGTTCAT-CTCA
1 TACCAAGAGTTCATACTCA
26302541 TACCAA-AGTTCATACTCA
1 TACCAAGAGTTCATACTCA
26302559 TA
1 TA
26302561 GGTTTTATAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 7 0.37
18 12 0.63
ACGTcount: A:0.37, C:0.26, G:0.08, T:0.29
Consensus pattern (19 bp):
TACCAAGAGTTCATACTCA
Found at i:26306559 original size:40 final size:40
Alignment explanation
Indices: 26306459--26306630 Score: 213
Period size: 40 Copynumber: 4.3 Consensus size: 40
26306449 GCTCCTCGTT
* *
26306459 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCACA
* *
26306499 C-AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCACA
* * *
26306538 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCACA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCACA
* * * * *
26306578 CAAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGG-ATTTAGTAACTCACA
26306618 CAAATGCCTTCGG
1 CAAATGCCTTCGG
26306631 ATCTTAGTCC
Statistics
Matches: 117, Mismatches: 13, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
39 35 0.30
40 78 0.67
41 4 0.03
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCACA
Found at i:26308881 original size:34 final size:33
Alignment explanation
Indices: 26308833--26308922 Score: 85
Period size: 33 Copynumber: 2.7 Consensus size: 33
26308823 GTTTCAGTTA
*
26308833 AGGCCTTAG-CCATTTCAGAATCAGAAACAGTG
1 AGGCCTAAGCCCATTTCAGAATCAGAAACAGTG
* * * *
26308865 TAGGCCTGAGCCCATTTCAATAAT-AGTATCAGTG
1 -AGGCCTAAGCCCATTTC-AGAATCAGAAACAGTG
* *
26308899 GGGCCTAAGCCCATTACAGAATCA
1 AGGCCTAAGCCCATTTCAGAATCA
26308923 ATACAGTATG
Statistics
Matches: 46, Mismatches: 8, Indels: 6
0.77 0.13 0.10
Matches are distributed among these distances:
32 4 0.09
33 23 0.50
34 15 0.33
35 4 0.09
ACGTcount: A:0.32, C:0.23, G:0.21, T:0.23
Consensus pattern (33 bp):
AGGCCTAAGCCCATTTCAGAATCAGAAACAGTG
Found at i:26311324 original size:29 final size:28
Alignment explanation
Indices: 26311287--26311342 Score: 85
Period size: 29 Copynumber: 2.0 Consensus size: 28
26311277 TGCGAGTTAT
*
26311287 ACTGATTTGGCTTCGGGCCATGCATATCG
1 ACTGATTTGGCTTCGAGCCATG-ATATCG
*
26311316 ACTGGTTTGGCTTCGAGCCATGATATC
1 ACTGATTTGGCTTCGAGCCATGATATC
26311343 AGTATTTTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.20
29 20 0.80
ACGTcount: A:0.18, C:0.23, G:0.27, T:0.32
Consensus pattern (28 bp):
ACTGATTTGGCTTCGAGCCATGATATCG
Found at i:26316337 original size:27 final size:27
Alignment explanation
Indices: 26316237--26316341 Score: 110
Period size: 27 Copynumber: 3.9 Consensus size: 27
26316227 GGCTGCCAAA
* *
26316237 CAGATAA-TGTGACAGAGTCACCAGAT
1 CAGATAATTGTGGCAGAGCCACCAGAT
* * *
26316263 ACAGATAATCGTGGC-GAACCACCAGAA
1 -CAGATAATTGTGGCAGAGCCACCAGAT
26316290 CAGAT-ATATGTGGCAGAGCCACCAGAT
1 CAGATAAT-TGTGGCAGAGCCACCAGAT
26316317 CAGATAATTGTGGCATG-GCCACCAG
1 CAGATAATTGTGGCA-GAGCCACCAG
26316342 GACGCTTCCT
Statistics
Matches: 65, Mismatches: 8, Indels: 10
0.78 0.10 0.12
Matches are distributed among these distances:
25 2 0.03
26 10 0.15
27 46 0.71
28 7 0.11
ACGTcount: A:0.35, C:0.23, G:0.25, T:0.17
Consensus pattern (27 bp):
CAGATAATTGTGGCAGAGCCACCAGAT
Found at i:26317774 original size:24 final size:24
Alignment explanation
Indices: 26317747--26317793 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
26317737 CTGGATTTCC
**
26317747 TCCCTTATCTGCTCCTAAATCCTA
1 TCCCTTATCAACTCCTAAATCCTA
26317771 TCCCTTATCAACTCCTAAATCCT
1 TCCCTTATCAACTCCTAAATCCT
26317794 CTCCTGACAG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.23, C:0.38, G:0.02, T:0.36
Consensus pattern (24 bp):
TCCCTTATCAACTCCTAAATCCTA
Found at i:26333967 original size:12 final size:11
Alignment explanation
Indices: 26333935--26333968 Score: 50
Period size: 11 Copynumber: 3.0 Consensus size: 11
26333925 GACCCGCCCG
26333935 TGTTAATTTTTA
1 TGTT-ATTTTTA
*
26333947 TATTATTTTTA
1 TGTTATTTTTA
26333958 TGTTATTTTTA
1 TGTTATTTTTA
26333969 AATATATATA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
11 17 0.85
12 3 0.15
ACGTcount: A:0.24, C:0.00, G:0.06, T:0.71
Consensus pattern (11 bp):
TGTTATTTTTA
Found at i:26334145 original size:30 final size:31
Alignment explanation
Indices: 26334090--26334153 Score: 94
Period size: 31 Copynumber: 2.1 Consensus size: 31
26334080 ACTTAACAAG
*
26334090 CAAATGCCTCTAAAATAATTAAAAAAATTAA
1 CAAACGCCTCTAAAATAATTAAAAAAATTAA
* *
26334121 CAAACGCCTTTAAAATAA-TAAAAAATTTAA
1 CAAACGCCTCTAAAATAATTAAAAAAATTAA
26334151 CAA
1 CAA
26334154 TAAAATAAGT
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
30 14 0.47
31 16 0.53
ACGTcount: A:0.58, C:0.14, G:0.03, T:0.25
Consensus pattern (31 bp):
CAAACGCCTCTAAAATAATTAAAAAAATTAA
Found at i:26350495 original size:19 final size:20
Alignment explanation
Indices: 26350459--26350497 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
26350449 AATGGCCCAA
26350459 GGCCCATTAGTCGACCCAAGT
1 GGCCCATTAG-CGACCCAAGT
*
26350480 GGCCCATTA-CGGCCCAAG
1 GGCCCATTAGCGACCCAAG
26350498 CCCCTGAGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 8 0.47
21 9 0.53
ACGTcount: A:0.23, C:0.36, G:0.26, T:0.15
Consensus pattern (20 bp):
GGCCCATTAGCGACCCAAGT
Found at i:26355995 original size:6 final size:6
Alignment explanation
Indices: 26355984--26356024 Score: 64
Period size: 6 Copynumber: 6.8 Consensus size: 6
26355974 TATAGATACG
* *
26355984 GTTTTA GTTTTA TTTTTA GTTTTA GTTTTA GTTCTA GTTTT
1 GTTTTA GTTTTA GTTTTA GTTTTA GTTTTA GTTTTA GTTTT
26356025 TTTTTCTCTT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
6 31 1.00
ACGTcount: A:0.15, C:0.02, G:0.15, T:0.68
Consensus pattern (6 bp):
GTTTTA
Found at i:26362724 original size:35 final size:35
Alignment explanation
Indices: 26362678--26362750 Score: 130
Period size: 35 Copynumber: 2.1 Consensus size: 35
26362668 GCTTCTTGCA
26362678 AAATTTTCCAAATAA-TTTCATTTTTTTGGGTACAC
1 AAATTTTCCAAATAAGTTT-ATTTTTTTGGGTACAC
26362713 AAATTTTCCAAATAAGTTTATTTTTTTGGGTACAC
1 AAATTTTCCAAATAAGTTTATTTTTTTGGGTACAC
26362748 AAA
1 AAA
26362751 CCCTATATCT
Statistics
Matches: 37, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
35 34 0.92
36 3 0.08
ACGTcount: A:0.34, C:0.12, G:0.10, T:0.44
Consensus pattern (35 bp):
AAATTTTCCAAATAAGTTTATTTTTTTGGGTACAC
Found at i:26375879 original size:25 final size:25
Alignment explanation
Indices: 26375851--26375902 Score: 104
Period size: 25 Copynumber: 2.1 Consensus size: 25
26375841 ATAATATTAC
26375851 TTAAGTACTTAAGCAAATCTATTGT
1 TTAAGTACTTAAGCAAATCTATTGT
26375876 TTAAGTACTTAAGCAAATCTATTGT
1 TTAAGTACTTAAGCAAATCTATTGT
26375901 TT
1 TT
26375903 TACTTAAGCT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.35, C:0.12, G:0.12, T:0.42
Consensus pattern (25 bp):
TTAAGTACTTAAGCAAATCTATTGT
Found at i:26377097 original size:47 final size:47
Alignment explanation
Indices: 26377046--26377190 Score: 213
Period size: 47 Copynumber: 3.1 Consensus size: 47
26377036 TTAGGATTTT
26377046 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
26377093 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * *
26377140 ATGTGGTGAATATGAACATGC--ATATGTGGTAAAGCCGAATGGTCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
26377185 ATGTGA
1 ATGTGA
26377191 AATATATATA
Statistics
Matches: 88, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
45 25 0.28
47 63 0.72
ACGTcount: A:0.32, C:0.12, G:0.30, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:26377148 original size:25 final size:25
Alignment explanation
Indices: 26377073--26377148 Score: 63
Period size: 23 Copynumber: 3.2 Consensus size: 25
26377063 ATGCATATAT
26377073 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
* * * *
26377098 ATGA-ATGTG-AGCAT-G-CATATGT-
1 GTGATAAG-GCCGAATGGCCA-ATGTG
26377120 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
26377145 GTGA
1 GTGA
26377149 ATATGAACAT
Statistics
Matches: 36, Mismatches: 8, Indels: 14
0.62 0.14 0.24
Matches are distributed among these distances:
22 6 0.17
23 10 0.28
24 10 0.28
25 10 0.28
ACGTcount: A:0.29, C:0.13, G:0.34, T:0.24
Consensus pattern (25 bp):
GTGATAAGGCCGAATGGCCAATGTG
Found at i:26377222 original size:50 final size:50
Alignment explanation
Indices: 26377149--26377295 Score: 244
Period size: 50 Copynumber: 3.0 Consensus size: 50
26377139 AATGTGGTGA
*
26377149 ATATGA-ACATGCATATGTGGTAAAGCCGAATGGTCAATGTGAAATATAT
1 ATATGAGATATGCATATGTGGTAAAGCCGAATGGTCAATGTGAAATATAT
26377198 ATATGAGATATGCATATGTGGTAAAGCCGAATGGTCAATGTGAAATATAT
1 ATATGAGATATGCATATGTGGTAAAGCCGAATGGTCAATGTGAAATATAT
* *
26377248 ATATGAGATATGTATATGTGGTAAAGCCGAATGG-CTAGTGTGAAATAT
1 ATATGAGATATGCATATGTGGTAAAGCCGAATGGTC-AATGTGAAATAT
26377296 GTAGGCGATG
Statistics
Matches: 93, Mismatches: 3, Indels: 3
0.94 0.03 0.03
Matches are distributed among these distances:
49 7 0.08
50 86 0.92
ACGTcount: A:0.37, C:0.08, G:0.24, T:0.30
Consensus pattern (50 bp):
ATATGAGATATGCATATGTGGTAAAGCCGAATGGTCAATGTGAAATATAT
Found at i:26377553 original size:37 final size:37
Alignment explanation
Indices: 26377445--26377553 Score: 173
Period size: 37 Copynumber: 2.9 Consensus size: 37
26377435 GGAAATATAT
* *
26377445 TCCGAGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
*
26377482 TTCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* *
26377519 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
26377554 CGTCTGAGCT
Statistics
Matches: 66, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 66 1.00
ACGTcount: A:0.24, C:0.18, G:0.30, T:0.28
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:26383175 original size:14 final size:14
Alignment explanation
Indices: 26383153--26383182 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
26383143 TAATTATTAA
26383153 TAATGAAATAAAGT
1 TAATGAAATAAAGT
*
26383167 TAATTAAATAAAGT
1 TAATGAAATAAAGT
26383181 TA
1 TA
26383183 CACAAGCACT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.57, C:0.00, G:0.10, T:0.33
Consensus pattern (14 bp):
TAATGAAATAAAGT
Found at i:26384876 original size:18 final size:15
Alignment explanation
Indices: 26384832--26384885 Score: 54
Period size: 17 Copynumber: 3.2 Consensus size: 15
26384822 AAACCCTAGC
26384832 CCCAAAACCCAACAA
1 CCCAAAACCCAACAA
26384847 CCCACTAAACCCAACAGAA
1 CCCA--AAACCCAAC--AA
26384866 GCCCAAAACCCAACTAA
1 -CCCAAAACCCAAC-AA
26384883 CCC
1 CCC
26384886 TTAACCCCAT
Statistics
Matches: 33, Mismatches: 1, Indels: 9
0.77 0.02 0.21
Matches are distributed among these distances:
15 4 0.12
16 3 0.09
17 11 0.33
18 9 0.27
19 2 0.06
20 4 0.12
ACGTcount: A:0.46, C:0.46, G:0.04, T:0.04
Consensus pattern (15 bp):
CCCAAAACCCAACAA
Found at i:26386756 original size:12 final size:12
Alignment explanation
Indices: 26386743--26386816 Score: 64
Period size: 12 Copynumber: 6.3 Consensus size: 12
26386733 ATATTCTTAC
*
26386743 TATTATCATTAC
1 TATTATCATTAT
26386755 TA-TAT--TTAT
1 TATTATCATTAT
* *
26386764 TATCATCATCAT
1 TATTATCATTAT
*
26386776 TATTATTATTAT
1 TATTATCATTAT
*
26386788 TATTATTATTAT
1 TATTATCATTAT
*
26386800 TATTATCTTTACT
1 TATTATCATTA-T
26386813 TATT
1 TATT
26386817 TTCTCATTAC
Statistics
Matches: 50, Mismatches: 8, Indels: 7
0.77 0.12 0.11
Matches are distributed among these distances:
9 5 0.10
10 2 0.04
11 3 0.06
12 35 0.70
13 5 0.10
ACGTcount: A:0.31, C:0.09, G:0.00, T:0.59
Consensus pattern (12 bp):
TATTATCATTAT
Found at i:26386780 original size:3 final size:3
Alignment explanation
Indices: 26386729--26386805 Score: 68
Period size: 3 Copynumber: 26.0 Consensus size: 3
26386719 TAATACTATA
* * * * * *
26386729 TAT TA- TAT TCT TAC TAT TAT CAT TAC TA- TATT TAT TAT CAT CAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA-T TAT TAT TAT TAT
*
26386773 CAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
26386806 CTTTACTTAT
Statistics
Matches: 62, Mismatches: 9, Indels: 6
0.81 0.12 0.08
Matches are distributed among these distances:
2 4 0.06
3 56 0.90
4 2 0.03
ACGTcount: A:0.32, C:0.09, G:0.00, T:0.58
Consensus pattern (3 bp):
TAT
Found at i:26392257 original size:21 final size:21
Alignment explanation
Indices: 26392210--26392269 Score: 72
Period size: 21 Copynumber: 2.9 Consensus size: 21
26392200 ATAAAGAAGT
26392210 ATAAAAATTC--AAAAATAAA
1 ATAAAAATTCAAAAAAATAAA
26392229 ATGGAAAAATTCAAAAAAATAAA
1 AT--AAAAATTCAAAAAAATAAA
26392252 ATAAAACATT-AAAAAAAT
1 ATAAAA-ATTCAAAAAAAT
26392270 GCAACACGAC
Statistics
Matches: 36, Mismatches: 0, Indels: 8
0.82 0.00 0.18
Matches are distributed among these distances:
19 2 0.06
21 20 0.56
22 3 0.08
23 11 0.31
ACGTcount: A:0.72, C:0.05, G:0.03, T:0.20
Consensus pattern (21 bp):
ATAAAAATTCAAAAAAATAAA
Found at i:26394169 original size:11 final size:12
Alignment explanation
Indices: 26394149--26394237 Score: 54
Period size: 12 Copynumber: 7.0 Consensus size: 12
26394139 TTCGTTTTGT
*
26394149 ATTATTTTTTAAA
1 ATTATTTTAT-AA
*
26394162 ATTATTTTATAT
1 ATTATTTTATAA
*
26394174 ATTATTTACTTTAA
1 ATTATTT--TATAA
*
26394188 ATTGTTTTATAA
1 ATTATTTTATAA
*
26394200 ATTATTTATTTCAA
1 ATTATTT-TAT-AA
*
26394214 ATTGA-TTTATAC
1 ATT-ATTTTATAA
*
26394226 TTTATTTTATAA
1 ATTATTTTATAA
26394238 TGTATATATT
Statistics
Matches: 58, Mismatches: 12, Indels: 13
0.70 0.14 0.16
Matches are distributed among these distances:
11 1 0.02
12 27 0.47
13 13 0.22
14 16 0.28
15 1 0.02
ACGTcount: A:0.35, C:0.03, G:0.02, T:0.60
Consensus pattern (12 bp):
ATTATTTTATAA
Found at i:26394195 original size:26 final size:25
Alignment explanation
Indices: 26394064--26394232 Score: 116
Period size: 26 Copynumber: 6.6 Consensus size: 25
26394054 ATTTTGAACA
*
26394064 GTTTTAT-TATTATTTATTTTAAGTT
1 GTTTTATATATTATTTA-TTTAAATT
* ** *
26394089 -TTTTCCTATGGTATTTGTTCTAAATT
1 GTTTT-ATATATTATTTATT-TAAATT
* *
26394115 GTTTTACCATATTATTTATTTTAATT
1 GTTTTA-TATATTATTTATTTAAATT
*
26394141 CG-TTT-TGTATTATTT-TTTAAAATT
1 -GTTTTATATATTATTTATTT-AAATT
*
26394165 ATTTTATATATTATTTACTTTAAATT
1 GTTTTATATATTATTTA-TTTAAATT
*
26394191 GTTTTATAAATTATTTATTTCAAATT
1 GTTTTATATATTATTTATTT-AAATT
*
26394217 GATTTATACT-TTATTT
1 GTTTTATA-TATTATTT
26394233 TATAATGTAT
Statistics
Matches: 111, Mismatches: 20, Indels: 25
0.71 0.13 0.16
Matches are distributed among these distances:
23 3 0.03
24 19 0.17
25 15 0.14
26 57 0.51
27 17 0.15
ACGTcount: A:0.27, C:0.05, G:0.06, T:0.62
Consensus pattern (25 bp):
GTTTTATATATTATTTATTTAAATT
Found at i:26396473 original size:19 final size:19
Alignment explanation
Indices: 26396451--26396496 Score: 67
Period size: 19 Copynumber: 2.4 Consensus size: 19
26396441 CTTCCTTTCT
26396451 TTTGCATT-CATTCCATACA
1 TTTGCATTGCATTCCAT-CA
*
26396470 TTTGCATTGCATTGCATCA
1 TTTGCATTGCATTCCATCA
26396489 TTTGCATT
1 TTTGCATT
26396497 AAACTTTCAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
19 18 0.72
20 7 0.28
ACGTcount: A:0.22, C:0.22, G:0.11, T:0.46
Consensus pattern (19 bp):
TTTGCATTGCATTCCATCA
Found at i:26409097 original size:28 final size:27
Alignment explanation
Indices: 26409034--26409185 Score: 232
Period size: 27 Copynumber: 5.6 Consensus size: 27
26409024 ATATTAAGTC
* * *
26409034 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
*
26409061 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACT
*
26409089 CGCGCACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
26409116 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACT
*
26409144 CGCACACTTAGTGCTACATAGTCAATT
1 CGCACACTTAGTGCTACATAGTCAACT
26409171 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
26409186 GCACAATTTA
Statistics
Matches: 117, Mismatches: 6, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
27 65 0.56
28 52 0.44
ACGTcount: A:0.30, C:0.29, G:0.14, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAACT
Found at i:26409120 original size:55 final size:55
Alignment explanation
Indices: 26409034--26409185 Score: 250
Period size: 55 Copynumber: 2.8 Consensus size: 55
26409024 ATATTAAGTC
* * *
26409034 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
* *
26409089 CGCGCACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
*
26409144 CGCACACTTAGTGCTACATAGTCAATTCGCACACTTAGTGCT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCT
26409186 GCACAATTTA
Statistics
Matches: 90, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
55 90 1.00
ACGTcount: A:0.30, C:0.29, G:0.14, T:0.26
Consensus pattern (55 bp):
CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
Found at i:26412143 original size:21 final size:22
Alignment explanation
Indices: 26412108--26412148 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
26412098 GTTTATTTTG
26412108 ATGTTTGATGATAGA-AAATGT
1 ATGTTTGATGATAGATAAATGT
* *
26412129 ATGTTTGTTGTTAGATAAAT
1 ATGTTTGATGATAGATAAAT
26412149 AAAATTTGTA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 13 0.76
22 4 0.24
ACGTcount: A:0.34, C:0.00, G:0.22, T:0.44
Consensus pattern (22 bp):
ATGTTTGATGATAGATAAATGT
Found at i:26414150 original size:26 final size:26
Alignment explanation
Indices: 26414113--26414162 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
26414103 TCATGGGCCG
* *
26414113 GGCTACTTGGCCCGGCCCGAAGGCTC
1 GGCTACTCGGCCCAGCCCGAAGGCTC
26414139 GGCTACTCGGCCCAGCCCGAAGGC
1 GGCTACTCGGCCCAGCCCGAAGGC
26414163 CCGCCCAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.14, C:0.40, G:0.34, T:0.12
Consensus pattern (26 bp):
GGCTACTCGGCCCAGCCCGAAGGCTC
Found at i:26414465 original size:30 final size:31
Alignment explanation
Indices: 26414431--26414491 Score: 88
Period size: 32 Copynumber: 2.0 Consensus size: 31
26414421 ACTTATTTTC
26414431 TTGTTAA-TTTTGTTATTATTTTAAAGGCAT
1 TTGTTAATTTTTGTTATTATTTTAAAGGCAT
* *
26414461 TTGTTAATTTTTTTTTATTATTTTAGAGGCA
1 TTGTTAA-TTTTTGTTATTATTTTAAAGGCA
26414492 CTTACTTGTT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
30 7 0.26
32 20 0.74
ACGTcount: A:0.25, C:0.03, G:0.13, T:0.59
Consensus pattern (31 bp):
TTGTTAATTTTTGTTATTATTTTAAAGGCAT
Found at i:26415340 original size:23 final size:23
Alignment explanation
Indices: 26415310--26415390 Score: 65
Period size: 23 Copynumber: 3.3 Consensus size: 23
26415300 CTTTCTTAAA
26415310 AATTGTTAATGATAGGAAGATTG
1 AATTGTTAATGATAGGAAGATTG
* * * * *
26415333 AATTGTTAGAATTAATTCA-TAAAAATA
1 AATTGTT--AA-TGA-T-AGGAAGATTG
26415360 AATTGTTAATGATAGGAAGATTG
1 AATTGTTAATGATAGGAAGATTG
26415383 AATTGTTA
1 AATTGTTA
26415391 GAATTAATTC
Statistics
Matches: 42, Mismatches: 10, Indels: 12
0.66 0.16 0.19
Matches are distributed among these distances:
22 1 0.02
23 20 0.48
24 2 0.05
25 4 0.10
26 2 0.05
27 12 0.29
28 1 0.02
ACGTcount: A:0.43, C:0.01, G:0.19, T:0.37
Consensus pattern (23 bp):
AATTGTTAATGATAGGAAGATTG
Found at i:26415365 original size:50 final size:50
Alignment explanation
Indices: 26415309--26415404 Score: 192
Period size: 50 Copynumber: 1.9 Consensus size: 50
26415299 CCTTTCTTAA
26415309 AAATTGTTAATGATAGGAAGATTGAATTGTTAGAATTAATTCATAAAAAT
1 AAATTGTTAATGATAGGAAGATTGAATTGTTAGAATTAATTCATAAAAAT
26415359 AAATTGTTAATGATAGGAAGATTGAATTGTTAGAATTAATTCATAA
1 AAATTGTTAATGATAGGAAGATTGAATTGTTAGAATTAATTCATAA
26415405 TGATTTAGAA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
50 46 1.00
ACGTcount: A:0.45, C:0.02, G:0.17, T:0.36
Consensus pattern (50 bp):
AAATTGTTAATGATAGGAAGATTGAATTGTTAGAATTAATTCATAAAAAT
Found at i:26415529 original size:41 final size:41
Alignment explanation
Indices: 26415482--26415567 Score: 172
Period size: 41 Copynumber: 2.1 Consensus size: 41
26415472 GATTACTCTA
26415482 GATACACAAAGGTTTATCTCCTAAGATCAAAAGATGAAACT
1 GATACACAAAGGTTTATCTCCTAAGATCAAAAGATGAAACT
26415523 GATACACAAAGGTTTATCTCCTAAGATCAAAAGATGAAACT
1 GATACACAAAGGTTTATCTCCTAAGATCAAAAGATGAAACT
26415564 GATA
1 GATA
26415568 AAACTTTTCT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 45 1.00
ACGTcount: A:0.44, C:0.16, G:0.15, T:0.24
Consensus pattern (41 bp):
GATACACAAAGGTTTATCTCCTAAGATCAAAAGATGAAACT
Found at i:26417417 original size:68 final size:68
Alignment explanation
Indices: 26417308--26417601 Score: 347
Period size: 68 Copynumber: 4.3 Consensus size: 68
26417298 GAGAGAGGTT
* ** * * * * *
26417308 TAATATGTAAGACCATTGCTAAACTATGGCAACATAAAGAGTTCGCCAAGATAGTAAACATGGGT
1 TAATATGTAAGACCATAGCTAGGCTATGGCAACATATAGAGTCCTCCAGGACAGTAAACATGGGT
26417373 TTA
66 TTA
* * * *
26417376 TAATATGTAAAACCATAGCTAGGCTATGGAAACATATAGAGTCTTCCAGGACAGTAAACATAGGT
1 TAATATGTAAGACCATAGCTAGGCTATGGCAACATATAGAGTCCTCCAGGACAGTAAACATGGGT
26417441 TTA
66 TTA
* * * *
26417444 TAATGTGTGAGACCATAGCTAGGCTATAGCAACATATAGAGTCCAT-CAGGATAGTAAACATGGG
1 TAATATGTAAGACCATAGCTAGGCTATGGCAACATATAGAGTCC-TCCAGGACAGTAAACATGGG
26417508 TTTA
65 TTTA
* * * *
26417512 TAATGTGTAAGACCATAACTAGGCTATGGCAATATATAGAGTCCTCCAGGACATTAAACATGGGT
1 TAATATGTAAGACCATAGCTAGGCTATGGCAACATATAGAGTCCTCCAGGACAGTAAACATGGGT
*
26417577 TCA
66 TTA
* * * *
26417580 TACTGTGTAAGACTATGGCTAG
1 TAATATGTAAGACCATAGCTAG
26417602 ACTACGGCCA
Statistics
Matches: 193, Mismatches: 31, Indels: 4
0.85 0.14 0.02
Matches are distributed among these distances:
67 1 0.01
68 191 0.99
69 1 0.01
ACGTcount: A:0.37, C:0.15, G:0.21, T:0.27
Consensus pattern (68 bp):
TAATATGTAAGACCATAGCTAGGCTATGGCAACATATAGAGTCCTCCAGGACAGTAAACATGGGT
TTA
Found at i:26420081 original size:45 final size:45
Alignment explanation
Indices: 26420030--26420197 Score: 246
Period size: 45 Copynumber: 3.7 Consensus size: 45
26420020 CAATGTCGAT
* * * *
26420030 GTCCCAGACATGCTCTTACACGTAACCACATATATCGATGCCAAC
1 GTCCCAGACGTGGTCTTACACGAAATCACATATATCGATGCCAAC
* * * *
26420075 GTCCCAGACGTGGTCTTACACGAAATCACATTTATTGATGCAAAT
1 GTCCCAGACGTGGTCTTACACGAAATCACATATATCGATGCCAAC
*
26420120 GTCCCAGACGTGGTCTTACATGAAATCACATATATCGATGCCAAC
1 GTCCCAGACGTGGTCTTACACGAAATCACATATATCGATGCCAAC
*
26420165 GTCCCAGACGTGGTCTTACACAAAATCACATAT
1 GTCCCAGACGTGGTCTTACACGAAATCACATAT
26420198 CAGAATCCTA
Statistics
Matches: 108, Mismatches: 15, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
45 108 1.00
ACGTcount: A:0.32, C:0.27, G:0.16, T:0.25
Consensus pattern (45 bp):
GTCCCAGACGTGGTCTTACACGAAATCACATATATCGATGCCAAC
Found at i:26420137 original size:90 final size:90
Alignment explanation
Indices: 26420028--26420195 Score: 282
Period size: 90 Copynumber: 1.9 Consensus size: 90
26420018 TACAATGTCG
*
26420028 ATGTCCCAGACATGCTCTTACACGTAACCACATATATCGATGCCAACGTCCCAGACGTGGTCTTA
1 ATGTCCCAGACATGCTCTTACACGAAACCACATATATCGATGCCAACGTCCCAGACGTGGTCTTA
*
26420093 CACGAAATCACATTTATTGATGCAA
66 CACAAAATCACATTTATTGATGCAA
* * * *
26420118 ATGTCCCAGACGTGGTCTTACATGAAATCACATATATCGATGCCAACGTCCCAGACGTGGTCTTA
1 ATGTCCCAGACATGCTCTTACACGAAACCACATATATCGATGCCAACGTCCCAGACGTGGTCTTA
26420183 CACAAAATCACAT
66 CACAAAATCACAT
26420196 ATCAGAATCC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
90 72 1.00
ACGTcount: A:0.32, C:0.27, G:0.16, T:0.25
Consensus pattern (90 bp):
ATGTCCCAGACATGCTCTTACACGAAACCACATATATCGATGCCAACGTCCCAGACGTGGTCTTA
CACAAAATCACATTTATTGATGCAA
Found at i:26421303 original size:14 final size:15
Alignment explanation
Indices: 26421286--26421314 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
26421276 GCACGAAAAT
26421286 TTCACACAT-ATAAA
1 TTCACACATAATAAA
26421300 TTCACACATAATAAA
1 TTCACACATAATAAA
26421315 CACAAAATAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.52, C:0.21, G:0.00, T:0.28
Consensus pattern (15 bp):
TTCACACATAATAAA
Found at i:26425736 original size:17 final size:19
Alignment explanation
Indices: 26425694--26425737 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
26425684 ATGAAATTTT
*
26425694 AATTAGTATTATAAGATAA
1 AATTATTATTATAAGATAA
*
26425713 AATTATTATTATTAGA-AA
1 AATTATTATTATAAGATAA
26425731 AA-TATTA
1 AATTATTA
26425738 CTGTATGTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 5 0.22
18 4 0.17
19 14 0.61
ACGTcount: A:0.52, C:0.00, G:0.07, T:0.41
Consensus pattern (19 bp):
AATTATTATTATAAGATAA
Found at i:26426901 original size:19 final size:20
Alignment explanation
Indices: 26426877--26426919 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
26426867 TGTTTTGTTG
26426877 TGGG-CCAACTGTATTGAAA
1 TGGGCCCAACTGTATTGAAA
* *
26426896 TGGGCCCAACTGTGTTGATA
1 TGGGCCCAACTGTATTGAAA
26426916 TGGG
1 TGGG
26426920 TAAGGCCCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 4 0.19
20 17 0.81
ACGTcount: A:0.23, C:0.16, G:0.33, T:0.28
Consensus pattern (20 bp):
TGGGCCCAACTGTATTGAAA
Found at i:26430286 original size:27 final size:27
Alignment explanation
Indices: 26430256--26430311 Score: 103
Period size: 27 Copynumber: 2.1 Consensus size: 27
26430246 TGGAGGTTTA
*
26430256 ATTTCTCTTCTAGTTCTATTTTTGGCG
1 ATTTCTCTTCTAGTTCTATTTTTAGCG
26430283 ATTTCTCTTCTAGTTCTATTTTTAGCG
1 ATTTCTCTTCTAGTTCTATTTTTAGCG
26430310 AT
1 AT
26430312 AGAGTATTGT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.14, C:0.18, G:0.12, T:0.55
Consensus pattern (27 bp):
ATTTCTCTTCTAGTTCTATTTTTAGCG
Found at i:26433224 original size:17 final size:17
Alignment explanation
Indices: 26433202--26433237 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
26433192 TAAAAAAGGG
26433202 TTTTATTTTTATTATCT
1 TTTTATTTTTATTATCT
26433219 TTTTATTTTTATTATCT
1 TTTTATTTTTATTATCT
26433236 TT
1 TT
26433238 CCTCTAATTG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.17, C:0.06, G:0.00, T:0.78
Consensus pattern (17 bp):
TTTTATTTTTATTATCT
Found at i:26438337 original size:33 final size:33
Alignment explanation
Indices: 26438300--26438373 Score: 87
Period size: 33 Copynumber: 2.2 Consensus size: 33
26438290 TGGCCTTACC
* * *
26438300 ATGGTCTTA-CATTCATAATGCCATAACTCAGTT
1 ATGGTCTTATCA-TCAGAATGCCATAACCCAGCT
* *
26438333 ATGGTCTTATCATCAGGATGCCATAGCCCAGCT
1 ATGGTCTTATCATCAGAATGCCATAACCCAGCT
26438366 ATGGTCTT
1 ATGGTCTT
26438374 GCACGTATAC
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
33 33 0.94
34 2 0.06
ACGTcount: A:0.26, C:0.23, G:0.18, T:0.34
Consensus pattern (33 bp):
ATGGTCTTATCATCAGAATGCCATAACCCAGCT
Found at i:26452315 original size:28 final size:29
Alignment explanation
Indices: 26452258--26452315 Score: 82
Period size: 28 Copynumber: 2.0 Consensus size: 29
26452248 TACAGAGGTT
*
26452258 TTCACAAGGCCAGGAACATGCCCGTGTCC
1 TTCACAAGGCCAGGAACACGCCCGTGTCC
* *
26452287 TTCACACGGCCATG-ACACGCCCGTGTCC
1 TTCACAAGGCCAGGAACACGCCCGTGTCC
26452315 T
1 T
26452316 AGCCTATGTG
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
28 14 0.54
29 12 0.46
ACGTcount: A:0.21, C:0.38, G:0.22, T:0.19
Consensus pattern (29 bp):
TTCACAAGGCCAGGAACACGCCCGTGTCC
Found at i:26457538 original size:49 final size:49
Alignment explanation
Indices: 26457478--26457652 Score: 242
Period size: 49 Copynumber: 3.5 Consensus size: 49
26457468 CTGGTCCGCA
* *
26457478 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACG
* * * * * ** *
26457527 TAGTAGCCTGCACTTAGTACTACACACGTGATCACAGTTTTCGGGTATGCA
1 TAGTAGCCTGCACTTAGTACTACACATGCGA-C-CAATTATCCGGTACACG
26457578 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACG
26457627 TAGTAGCCTGCACTTAGTACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
26457653 CGTGACCTCA
Statistics
Matches: 107, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
49 66 0.62
50 2 0.02
51 39 0.36
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.26
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACG
Found at i:26457589 original size:100 final size:100
Alignment explanation
Indices: 26457475--26457657 Score: 348
Period size: 100 Copynumber: 1.8 Consensus size: 100
26457465 TATCTGGTCC
*
26457475 GCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCTGGTACACGTAGTAGCCTGCAC
1 GCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCCGGTACACGTAGTAGCCTGCAC
26457540 TTAGTACTACACACGTGATCACAGTTTTCGGGTAT
66 TTAGTACTACACACGTGATCACAGTTTTCGGGTAT
*
26457575 GCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACGTAGTAGCCTGCAC
1 GCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCCGGTACACGTAGTAGCCTGCAC
26457640 TTAGTACTACACACGTGA
66 TTAGTACTACACACGTGA
26457658 CCTCACAATA
Statistics
Matches: 81, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
100 81 1.00
ACGTcount: A:0.28, C:0.26, G:0.20, T:0.26
Consensus pattern (100 bp):
GCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCCGGTACACGTAGTAGCCTGCAC
TTAGTACTACACACGTGATCACAGTTTTCGGGTAT
Found at i:26460069 original size:6 final size:6
Alignment explanation
Indices: 26460058--26460109 Score: 86
Period size: 6 Copynumber: 8.5 Consensus size: 6
26460048 CAAACAAAGT
*
26460058 AATAAA AATAAA AAGCAAA AATAAA AATAAA AATAAA AATAAA AATAAA
1 AATAAA AATAAA AA-TAAA AATAAA AATAAA AATAAA AATAAA AATAAA
26460107 AAT
1 AAT
26460110 TGGGTTGCCT
Statistics
Matches: 43, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
6 38 0.88
7 5 0.12
ACGTcount: A:0.81, C:0.02, G:0.02, T:0.15
Consensus pattern (6 bp):
AATAAA
Found at i:26460076 original size:25 final size:25
Alignment explanation
Indices: 26460058--26460109 Score: 88
Period size: 25 Copynumber: 2.1 Consensus size: 25
26460048 CAAACAAAGT
26460058 AATAAAAATAAAAAGCAAAAATAAA
1 AATAAAAATAAAAAGCAAAAATAAA
*
26460083 AATAAAAATAAAAA-TAAAAATAAA
1 AATAAAAATAAAAAGCAAAAATAAA
26460107 AAT
1 AAT
26460110 TGGGTTGCCT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
24 12 0.46
25 14 0.54
ACGTcount: A:0.81, C:0.02, G:0.02, T:0.15
Consensus pattern (25 bp):
AATAAAAATAAAAAGCAAAAATAAA
Found at i:26462665 original size:23 final size:23
Alignment explanation
Indices: 26462614--26462665 Score: 54
Period size: 23 Copynumber: 2.3 Consensus size: 23
26462604 AAATTTCATT
*
26462614 GAATTGGTATAAACATGAGGATG
1 GAATTGGTATAAACATGAAGATG
*
26462637 GTATTGGTATAAA-ATGGATAGA-G
1 GAATTGGTATAAACAT-GA-AGATG
26462660 GAATTG
1 GAATTG
26462666 AGAATGTATA
Statistics
Matches: 24, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
22 2 0.08
23 20 0.83
24 2 0.08
ACGTcount: A:0.38, C:0.02, G:0.31, T:0.29
Consensus pattern (23 bp):
GAATTGGTATAAACATGAAGATG
Found at i:26469154 original size:41 final size:41
Alignment explanation
Indices: 26469096--26469243 Score: 149
Period size: 41 Copynumber: 3.6 Consensus size: 41
26469086 GAGCTTGGTC
26469096 TCGAAGGGCTTTTGAGCCAGTGCTAATAACCGAACTTAGTT
1 TCGAAGGGCTTTTGAGCCAGTGCTAATAACCGAACTTAGTT
* * *
26469137 TCGAAGGGCTTTAGAGCCAGTG-TCATAACCGGACTTAGTT
1 TCGAAGGGCTTTTGAGCCAGTGCTAATAACCGAACTTAGTT
* * * * * * *
26469177 CCAAAGGGCCTTCGAGCCAGTGGTCTAAT--CCGAGCTTGGTC
1 TCGAAGGGCTTTTGAGCCAGT-G-CTAATAACCGAACTTAGTT
* *
26469218 TGGAAGGGCTTTTGAGCCAGTACTAA
1 TCGAAGGGCTTTTGAGCCAGTGCTAA
26469244 GAATCGGGCT
Statistics
Matches: 86, Mismatches: 18, Indels: 8
0.77 0.16 0.07
Matches are distributed among these distances:
39 4 0.05
40 33 0.38
41 46 0.53
43 3 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (41 bp):
TCGAAGGGCTTTTGAGCCAGTGCTAATAACCGAACTTAGTT
Found at i:26486631 original size:14 final size:13
Alignment explanation
Indices: 26486606--26486630 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
26486596 ACCTGGGAAA
26486606 AAAATAAAAAAAC
1 AAAATAAAAAAAC
26486619 AAAATAAAAAAA
1 AAAATAAAAAAA
26486631 AGACAGAATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.88, C:0.04, G:0.00, T:0.08
Consensus pattern (13 bp):
AAAATAAAAAAAC
Found at i:26486673 original size:17 final size:18
Alignment explanation
Indices: 26486653--26486686 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
26486643 AAGTTGATTG
26486653 AAATTGC-AAAATTAAAT
1 AAATTGCAAAAATTAAAT
26486670 AAATTGCAAAAATTAAA
1 AAATTGCAAAAATTAAA
26486687 ATAGAGAATA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.62, C:0.06, G:0.06, T:0.26
Consensus pattern (18 bp):
AAATTGCAAAAATTAAAT
Found at i:26487293 original size:67 final size:67
Alignment explanation
Indices: 26487185--26487315 Score: 262
Period size: 67 Copynumber: 2.0 Consensus size: 67
26487175 CCTTTTTTTA
26487185 GGAATTTTTGACAACCTTTGGCTAGATGGATTTAGTGGCTCATGCTTTTGGGAAAAGAAATAGAT
1 GGAATTTTTGACAACCTTTGGCTAGATGGATTTAGTGGCTCATGCTTTTGGGAAAAGAAATAGAT
26487250 TG
66 TG
26487252 GGAATTTTTGACAACCTTTGGCTAGATGGATTTAGTGGCTCATGCTTTTGGGAAAAGAAATAGA
1 GGAATTTTTGACAACCTTTGGCTAGATGGATTTAGTGGCTCATGCTTTTGGGAAAAGAAATAGA
26487316 CTTAATAAAA
Statistics
Matches: 64, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
67 64 1.00
ACGTcount: A:0.29, C:0.11, G:0.27, T:0.34
Consensus pattern (67 bp):
GGAATTTTTGACAACCTTTGGCTAGATGGATTTAGTGGCTCATGCTTTTGGGAAAAGAAATAGAT
TG
Found at i:26487497 original size:10 final size:10
Alignment explanation
Indices: 26487472--26487521 Score: 57
Period size: 10 Copynumber: 5.0 Consensus size: 10
26487462 TTAACTTCTA
26487472 AAAGATAAA-
1 AAAGATAAAT
26487481 AATAGATAAAT
1 AA-AGATAAAT
**
26487492 AAAGATATTT
1 AAAGATAAAT
*
26487502 AAAAATAAAT
1 AAAGATAAAT
26487512 AAAGATAAAT
1 AAAGATAAAT
26487522 GGAGATAAAA
Statistics
Matches: 33, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
9 2 0.06
10 29 0.88
11 2 0.06
ACGTcount: A:0.68, C:0.00, G:0.08, T:0.24
Consensus pattern (10 bp):
AAAGATAAAT
Found at i:26487556 original size:14 final size:13
Alignment explanation
Indices: 26487526--26487566 Score: 57
Period size: 14 Copynumber: 3.2 Consensus size: 13
26487516 ATAAATGGAG
*
26487526 ATAAAAGCTAA-A
1 ATAAAATCTAATA
26487538 ATAAAATCTAAATA
1 ATAAAATCT-AATA
26487552 ATAAAATCTAATA
1 ATAAAATCTAATA
26487565 AT
1 AT
26487567 TATCCTAATA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
12 8 0.31
13 8 0.31
14 10 0.38
ACGTcount: A:0.63, C:0.07, G:0.02, T:0.27
Consensus pattern (13 bp):
ATAAAATCTAATA
Found at i:26495955 original size:46 final size:46
Alignment explanation
Indices: 26495888--26496002 Score: 203
Period size: 46 Copynumber: 2.5 Consensus size: 46
26495878 TGTAACCCGC
* *
26495888 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCAT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGACATTCGCAT
*
26495934 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGACATTCGCAT
26495980 CCATAAGTGAACTCAGACTCAAC
1 CCATAAGTGAACTCAGACTCAAC
26496003 GAGTTCGGAT
Statistics
Matches: 66, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 66 1.00
ACGTcount: A:0.32, C:0.30, G:0.18, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:26502628 original size:42 final size:42
Alignment explanation
Indices: 26502517--26502670 Score: 211
Period size: 42 Copynumber: 3.6 Consensus size: 42
26502507 TACCATACCA
* * **
26502517 ATGCCATATCCTAGATATGGTCTTACATGTAA-TCTCGTATCG
1 ATGCCATATCCCAGATATGGTCTTACACG-AAGTCTTATATCG
* *
26502559 ATGCCAATAGCCCAGCTATGGTCTTACACGAAGTCTTATATCG
1 ATGCC-ATATCCCAGATATGGTCTTACACGAAGTCTTATATCG
*
26502602 ATGCCATATCCCAGATATGGTCTTACACGAAGCCTTATATCG
1 ATGCCATATCCCAGATATGGTCTTACACGAAGTCTTATATCG
*
26502644 ATGCCATATCCCAGATATGGTCATACA
1 ATGCCATATCCCAGATATGGTCTTACA
26502671 TGTAATCTTA
Statistics
Matches: 100, Mismatches: 10, Indels: 4
0.88 0.09 0.04
Matches are distributed among these distances:
42 67 0.67
43 33 0.33
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.30
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACACGAAGTCTTATATCG
Found at i:26508526 original size:50 final size:50
Alignment explanation
Indices: 26508451--26508627 Score: 246
Period size: 50 Copynumber: 3.5 Consensus size: 50
26508441 CCATGGCAAC
*
26508451 AAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGGACAAATGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
* * *
26508501 AAGTGATAAGTAATAGCTTCGGCTACACTTATCTGAACAAGGACAAGTGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
* * *
26508551 AAGTGACAAGTGATAGCTTCGGCTGCACTTATCTAATCAAGGACAAATGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
* * * *
26508601 CAAGTGAAAAATGGTAGCTTCGACTAC
1 -AAGTGATAAGTGATAGCTTCGGCTAC
26508628 CTGATCAGTG
Statistics
Matches: 111, Mismatches: 15, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
50 90 0.81
51 21 0.19
ACGTcount: A:0.37, C:0.17, G:0.21, T:0.24
Consensus pattern (50 bp):
AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
Found at i:26508641 original size:31 final size:31
Alignment explanation
Indices: 26508603--26508751 Score: 217
Period size: 31 Copynumber: 4.8 Consensus size: 31
26508593 ACAAATGACA
* *
26508603 AGTGAAAAATGGTAGCTTCGACTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
**
26508634 AGTGAAAAGTGGTAGCTTCTACTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
26508665 AGTGAAAAGTGGTAGCTCCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* * *
26508696 AGTGAAAAATGGTAGCTCCGGCTACCTAATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
26508727 AGTGAATAGTGGTAGCTTCGGCTAC
1 AGTGAAAAGTGGTAGCTTCGGCTAC
26508752 AAGTGACAAG
Statistics
Matches: 108, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 108 1.00
ACGTcount: A:0.29, C:0.20, G:0.26, T:0.26
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
Found at i:26508823 original size:46 final size:48
Alignment explanation
Indices: 26508773--26508937 Score: 150
Period size: 42 Copynumber: 3.6 Consensus size: 48
26508763 GATTTCCGTA
* * * *
26508773 TAAGACCATATCTAGGATATGGCATCA-GTGAGATATGTGATT-CGTG
1 TAAGACCATAGCTAGGCTATGGCATCATATGAGATATATGATTACGTG
* * *
26508819 TAAGACCATAGCTGGGCTATGGCATCGATATGTGATATATGCTTACGTG
1 TAAGACCATAGCTAGGCTATGGCATC-ATATGAGATATATGATTACGTG
* * *
26508868 TAAGACCATAGCTTGGCTATGGCATC-----A-ATATATGAATATGTG
1 TAAGACCATAGCTAGGCTATGGCATCATATGAGATATATGATTACGTG
*
26508910 TAAGACCATAGCT-GGCCTATGGGATCAT
1 TAAGACCATAGCTAGG-CTATGGCATCAT
26508938 TATGTGAAGA
Statistics
Matches: 100, Mismatches: 13, Indels: 14
0.79 0.10 0.11
Matches are distributed among these distances:
41 2 0.02
42 34 0.34
46 23 0.23
47 1 0.01
48 11 0.11
49 29 0.29
ACGTcount: A:0.30, C:0.16, G:0.25, T:0.30
Consensus pattern (48 bp):
TAAGACCATAGCTAGGCTATGGCATCATATGAGATATATGATTACGTG
Found at i:26508874 original size:49 final size:47
Alignment explanation
Indices: 26508773--26508944 Score: 153
Period size: 49 Copynumber: 3.7 Consensus size: 47
26508763 GATTTCCGTA
* * * * *
26508773 TAAGACCATATCTAGGATATGGCATCA-GTGAGATATGTGATTCGTG
1 TAAGACCATAGCTAGGCTATGGCATCATATGTGATATATGATTCGTG
* *
26508819 TAAGACCATAGCTGGGCTATGGCATCGATATGTGATATATGCTTACGTG
1 TAAGACCATAGCTAGGCTATGGCATC-ATATGTGATATATGATT-CGTG
* *
26508868 TAAGACCATAGCTTGGCTATGGCATCA-ATAT-ATGA-AT-A-T-GTG
1 TAAGACCATAGCTAGGCTATGGCATCATATGTGAT-ATATGATTCGTG
*
26508910 TAAGACCATAGCT-GGCCTATGGGATCATTATGTGA
1 TAAGACCATAGCTAGG-CTATGGCATCA-TATGTGA
26508945 AGATGTGTAA
Statistics
Matches: 106, Mismatches: 12, Indels: 17
0.79 0.09 0.13
Matches are distributed among these distances:
41 2 0.02
42 26 0.25
44 4 0.04
45 1 0.01
46 27 0.25
47 5 0.05
48 12 0.11
49 29 0.27
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.30
Consensus pattern (47 bp):
TAAGACCATAGCTAGGCTATGGCATCATATGTGATATATGATTCGTG
Found at i:26508912 original size:42 final size:42
Alignment explanation
Indices: 26508865--26508977 Score: 149
Period size: 42 Copynumber: 2.7 Consensus size: 42
26508855 ATATGCTTAC
*
26508865 GTGTAAGACCATAGCTTGGCTATGGCATCAATATATGAATAT
1 GTGTAAGACCATAGCTTGGCTATGGCATCAATATATGAAGAT
* * *
26508907 GTGTAAGACCATAGC-TGGCCTATGGGATCATTATGTGAAGAT
1 GTGTAAGACCATAGCTTGG-CTATGGCATCAATATATGAAGAT
*
26508949 GTGTAAGACCATA-TTTGAGCTATGGCATC
1 GTGTAAGACCATAGCTTG-GCTATGGCATC
26508978 GAGAAAACGA
Statistics
Matches: 62, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
41 3 0.05
42 58 0.94
43 1 0.02
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.30
Consensus pattern (42 bp):
GTGTAAGACCATAGCTTGGCTATGGCATCAATATATGAAGAT
Found at i:26513336 original size:50 final size:50
Alignment explanation
Indices: 26513261--26513437 Score: 264
Period size: 50 Copynumber: 3.5 Consensus size: 50
26513251 CCATGGCAAC
26513261 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
* * * * *
26513311 AAGTGATAAGTAATAGCTTCGGCTACACTTATCTAAACAATGACAAGTGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
* *
26513361 AAGTGACAAGTGATAGCTTCAGCTACACTTATCTGATCAAGGACAAATGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
* *
26513411 CAAGTGAAAAGTGGTAGCTTCGGCTAC
1 -AAGTGATAAGTGATAGCTTCGGCTAC
26513438 CTGATCAGTG
Statistics
Matches: 111, Mismatches: 15, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
50 88 0.79
51 23 0.21
ACGTcount: A:0.37, C:0.17, G:0.21, T:0.25
Consensus pattern (50 bp):
AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
Found at i:26513451 original size:31 final size:31
Alignment explanation
Indices: 26513413--26513561 Score: 210
Period size: 31 Copynumber: 4.8 Consensus size: 31
26513403 ACAAATGACA
26513413 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* *
26513444 AGTGAAAAGTGGTAGCTTCTGCTACCTGATA
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
26513475 AGTGAAAAGTGGTAGC-TCTGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTC-GGCTACCTGATC
* * *
26513506 AGTGAAAAATGGTAGCTCCGGCTACCTAATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* * *
26513537 AGTGAATAGTGATAGCTTCGACTAC
1 AGTGAAAAGTGGTAGCTTCGGCTAC
26513562 AAGTGACAAG
Statistics
Matches: 104, Mismatches: 12, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
30 2 0.02
31 101 0.97
32 1 0.01
ACGTcount: A:0.29, C:0.19, G:0.26, T:0.26
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
Found at i:26513697 original size:46 final size:42
Alignment explanation
Indices: 26513673--26513789 Score: 146
Period size: 42 Copynumber: 2.8 Consensus size: 42
26513663 TTTGTGATTC
*
26513673 GTGTAAGACCATAGCTGGGCTATGGCATCGATATATGAATAT
1 GTGTAAGACCATAGCTGGGCTATGGCATCGAGATATGAATAT
* * *
26513715 GTGTAAGACCATAGCTGGGCTATGGCATC-ATTATGTGAAGAT
1 GTGTAAGACCATAGCTGGGCTATGGCATCGA-GATATGAATAT
* ** *
26513757 GTGTAAGACCATAGTTGAACTATGGTATCGAGA
1 GTGTAAGACCATAGCTGGGCTATGGCATCGAGA
26513790 AAACGAAGTA
Statistics
Matches: 66, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
41 1 0.02
42 64 0.97
43 1 0.02
ACGTcount: A:0.31, C:0.14, G:0.27, T:0.28
Consensus pattern (42 bp):
GTGTAAGACCATAGCTGGGCTATGGCATCGAGATATGAATAT
Found at i:26513781 original size:42 final size:42
Alignment explanation
Indices: 26513673--26513770 Score: 162
Period size: 42 Copynumber: 2.3 Consensus size: 42
26513663 TTTGTGATTC
*
26513673 GTGTAAGACCATAGCTGGGCTATGGCATCGATATATGAATAT
1 GTGTAAGACCATAGCTGGGCTATGGCATCGATATATGAAGAT
*
26513715 GTGTAAGACCATAGCTGGGCTATGGCATC-ATTATGTGAAGAT
1 GTGTAAGACCATAGCTGGGCTATGGCATCGA-TATATGAAGAT
26513757 GTGTAAGACCATAG
1 GTGTAAGACCATAG
26513771 TTGAACTATG
Statistics
Matches: 53, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
41 1 0.02
42 52 0.98
ACGTcount: A:0.31, C:0.14, G:0.28, T:0.28
Consensus pattern (42 bp):
GTGTAAGACCATAGCTGGGCTATGGCATCGATATATGAAGAT
Found at i:26517945 original size:28 final size:27
Alignment explanation
Indices: 26517888--26518039 Score: 232
Period size: 27 Copynumber: 5.6 Consensus size: 27
26517878 TAAATTGTGC
* *
26517888 AGCACTAAGTGTGCGAATTGAATATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
26517915 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
26517943 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
26517970 AGCACTAAGTGTGCGAGTATGATTATGT
1 AGCACTAAGTGTGCGAGT-TGACTATGT
* *
26517998 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
26518025 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
26518040 GACTTAATAT
Statistics
Matches: 118, Mismatches: 5, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
27 66 0.56
28 52 0.44
ACGTcount: A:0.28, C:0.13, G:0.29, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGACTATGT
Found at i:26517953 original size:55 final size:55
Alignment explanation
Indices: 26517888--26518039 Score: 241
Period size: 55 Copynumber: 2.8 Consensus size: 55
26517878 TAAATTGTGC
* *
26517888 AGCACTAAGTGTGCGAATTGAATATGTAGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGAATATGTAGCACTAAGTGTGCGAGTATGACTATGT
* *
26517943 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTATGATTATGT
1 AGCACTAAGTGTGCGAGTTGAATATGTAGCACTAAGTGTGCGAGTATGACTATGT
* * *
26517998 AGCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 AGCACTAAGTGTGCGAGTTGAATATGTAGCACTAAGTGTGCG
26518040 GACTTAATAT
Statistics
Matches: 90, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
55 90 1.00
ACGTcount: A:0.28, C:0.13, G:0.29, T:0.30
Consensus pattern (55 bp):
AGCACTAAGTGTGCGAGTTGAATATGTAGCACTAAGTGTGCGAGTATGACTATGT
Found at i:26526065 original size:28 final size:27
Alignment explanation
Indices: 26526008--26526159 Score: 232
Period size: 27 Copynumber: 5.6 Consensus size: 27
26525998 TAAATTGTGC
* *
26526008 AGCACTAAGTGTGCGAATTGAATATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
26526035 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
26526063 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
26526090 AGCACTAAGTGTGCGAGTATGATTATGT
1 AGCACTAAGTGTGCGAGT-TGACTATGT
* *
26526118 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
26526145 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
26526160 GACTTAATAT
Statistics
Matches: 118, Mismatches: 5, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
27 66 0.56
28 52 0.44
ACGTcount: A:0.28, C:0.13, G:0.29, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGACTATGT
Found at i:26526073 original size:55 final size:55
Alignment explanation
Indices: 26526008--26526159 Score: 241
Period size: 55 Copynumber: 2.8 Consensus size: 55
26525998 TAAATTGTGC
* *
26526008 AGCACTAAGTGTGCGAATTGAATATGTAGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGAATATGTAGCACTAAGTGTGCGAGTATGACTATGT
* *
26526063 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTATGATTATGT
1 AGCACTAAGTGTGCGAGTTGAATATGTAGCACTAAGTGTGCGAGTATGACTATGT
* * *
26526118 AGCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 AGCACTAAGTGTGCGAGTTGAATATGTAGCACTAAGTGTGCG
26526160 GACTTAATAT
Statistics
Matches: 90, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
55 90 1.00
ACGTcount: A:0.28, C:0.13, G:0.29, T:0.30
Consensus pattern (55 bp):
AGCACTAAGTGTGCGAGTTGAATATGTAGCACTAAGTGTGCGAGTATGACTATGT
Found at i:26547009 original size:56 final size:54
Alignment explanation
Indices: 26546947--26547124 Score: 196
Period size: 56 Copynumber: 3.2 Consensus size: 54
26546937 GAGATTGGCG
*
26546947 CTAAGTGTGCGGGTTTAAATTGTGCAGCACTAAGTGTGCGAATTGAATATGTAGCA
1 CTAAGTGTGCGAGTTT-AATTGTG-AGCACTAAGTGTGCGAATTGAATATGTAGCA
* * *
26547003 CTAAGTGTGCGAGTTTGACTATGT-AGCACTAAGTGTGCGAGTTTGACTATGTAGCA
1 CTAAGTGTGCGAGTTT-AAT-TGTGAGCACTAAGTGTGCGA-ATTGAATATGTAGCA
* * * * * *
26547059 CTAAGTGTGCGAGTATGATTATGTAGCACTAAGTGTGCGAGTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTAATTGTG-AGCACTAAGTGTGCGAATTGAATATGTAGCA
*
26547114 CTGAGTGTGCG
1 CTAAGTGTGCG
26547125 GACTTAATAA
Statistics
Matches: 105, Mismatches: 13, Indels: 9
0.83 0.10 0.07
Matches are distributed among these distances:
54 2 0.02
55 39 0.37
56 61 0.58
57 3 0.03
ACGTcount: A:0.26, C:0.13, G:0.29, T:0.31
Consensus pattern (54 bp):
CTAAGTGTGCGAGTTTAATTGTGAGCACTAAGTGTGCGAATTGAATATGTAGCA
Found at i:26547029 original size:28 final size:28
Alignment explanation
Indices: 26546972--26547124 Score: 229
Period size: 28 Copynumber: 5.5 Consensus size: 28
26546962 TAAATTGTGC
* *
26546972 AGCACTAAGTGTGCGA-ATTGAATATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
26546999 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
26547027 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
* *
26547055 AGCACTAAGTGTGCGAGTATGATTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
* *
26547083 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
*
26547110 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
26547125 GACTTAATAA
Statistics
Matches: 118, Mismatches: 7, Indels: 2
0.93 0.06 0.02
Matches are distributed among these distances:
27 38 0.32
28 80 0.68
ACGTcount: A:0.27, C:0.13, G:0.29, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGACTATGT
Found at i:26555144 original size:28 final size:27
Alignment explanation
Indices: 26555087--26555238 Score: 232
Period size: 27 Copynumber: 5.6 Consensus size: 27
26555077 TAAATTGTGC
* *
26555087 AGCACTAAGTGTGCGAATTGAATATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
26555114 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
26555142 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
26555169 AGCACTAAGTGTGCGAGTATGATTATGT
1 AGCACTAAGTGTGCGAGT-TGACTATGT
* *
26555197 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
26555224 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
26555239 GACTTAATAT
Statistics
Matches: 118, Mismatches: 5, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
27 66 0.56
28 52 0.44
ACGTcount: A:0.28, C:0.13, G:0.29, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGACTATGT
Found at i:26555152 original size:55 final size:55
Alignment explanation
Indices: 26555087--26555238 Score: 241
Period size: 55 Copynumber: 2.8 Consensus size: 55
26555077 TAAATTGTGC
* *
26555087 AGCACTAAGTGTGCGAATTGAATATGTAGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGAATATGTAGCACTAAGTGTGCGAGTATGACTATGT
* *
26555142 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTATGATTATGT
1 AGCACTAAGTGTGCGAGTTGAATATGTAGCACTAAGTGTGCGAGTATGACTATGT
* * *
26555197 AGCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 AGCACTAAGTGTGCGAGTTGAATATGTAGCACTAAGTGTGCG
26555239 GACTTAATAT
Statistics
Matches: 90, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
55 90 1.00
ACGTcount: A:0.28, C:0.13, G:0.29, T:0.30
Consensus pattern (55 bp):
AGCACTAAGTGTGCGAGTTGAATATGTAGCACTAAGTGTGCGAGTATGACTATGT
Found at i:26566942 original size:18 final size:18
Alignment explanation
Indices: 26566919--26566960 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
26566909 GAACAATTAT
*
26566919 TTATTCAGAATCAGTCTG
1 TTATTCAGAATCAGTCAG
* *
26566937 TTATTCGGTATCAGTCAG
1 TTATTCAGAATCAGTCAG
26566955 TTATTC
1 TTATTC
26566961 GGTAACAATC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.24, C:0.17, G:0.17, T:0.43
Consensus pattern (18 bp):
TTATTCAGAATCAGTCAG
Found at i:26566961 original size:18 final size:18
Alignment explanation
Indices: 26566928--26566978 Score: 66
Period size: 18 Copynumber: 2.8 Consensus size: 18
26566918 TTTATTCAGA
*
26566928 ATCAGTCTGTTATTCGGT
1 ATCAGTCAGTTATTCGGT
26566946 ATCAGTCAGTTATTCGGT
1 ATCAGTCAGTTATTCGGT
* * *
26566964 AACAATCAATTATTC
1 ATCAGTCAGTTATTC
26566979 AATACTAATC
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 29 1.00
ACGTcount: A:0.27, C:0.18, G:0.16, T:0.39
Consensus pattern (18 bp):
ATCAGTCAGTTATTCGGT
Found at i:26566988 original size:18 final size:18
Alignment explanation
Indices: 26566966--26567010 Score: 56
Period size: 18 Copynumber: 2.5 Consensus size: 18
26566956 TATTCGGTAA
26566966 CAATCAATTATTCAATA-
1 CAATCAATTATTCAATAT
* *
26566983 CTAATCAGTTATTCAGTAT
1 C-AATCAATTATTCAATAT
26567002 CAATCAATT
1 CAATCAATT
26567011 GATCGGTTAT
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
17 1 0.04
18 21 0.91
19 1 0.04
ACGTcount: A:0.40, C:0.18, G:0.04, T:0.38
Consensus pattern (18 bp):
CAATCAATTATTCAATAT
Found at i:26567043 original size:18 final size:18
Alignment explanation
Indices: 26567017--26567092 Score: 71
Period size: 18 Copynumber: 4.1 Consensus size: 18
26567007 AATTGATCGG
*
26567017 TTATCCAGTAACAATCAA
1 TTATTCAGTAACAATCAA
*
26567035 TTATTCAGTAAAAATCAGA
1 TTATTCAGTAACAATCA-A
* * *
26567054 TATATACAGTGACAATTAAA
1 T-TATTCAGTAACAA-TCAA
*
26567074 TTATTCAGTAACAGTCAA
1 TTATTCAGTAACAATCAA
26567092 T
1 T
26567093 CTTTCCAGTT
Statistics
Matches: 45, Mismatches: 10, Indels: 6
0.74 0.16 0.10
Matches are distributed among these distances:
18 19 0.42
19 12 0.27
20 12 0.27
21 2 0.04
ACGTcount: A:0.45, C:0.14, G:0.09, T:0.32
Consensus pattern (18 bp):
TTATTCAGTAACAATCAA
Found at i:26567327 original size:53 final size:53
Alignment explanation
Indices: 26567208--26567332 Score: 151
Period size: 53 Copynumber: 2.4 Consensus size: 53
26567198 CTGGAACAAT
* * * * *
26567208 AACAGTAACAGTAGCAATATGGTACACAGAGTACCTCATCAGAATAAATCCGG
1 AACAGTAACAGTAACAATACGGTACACAAAGTACCTCATCAGAACAAATCCGA
* * ** *
26567261 AACGGTAACAGTAACAGTACGGTACACAAAGTACCTCATTGGAACAAATTCGA
1 AACAGTAACAGTAACAATACGGTACACAAAGTACCTCATCAGAACAAATCCGA
*
26567314 AACAGTAATAGTAACAATA
1 AACAGTAACAGTAACAATA
26567333 TCCGACACAC
Statistics
Matches: 59, Mismatches: 13, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
53 59 1.00
ACGTcount: A:0.44, C:0.19, G:0.18, T:0.19
Consensus pattern (53 bp):
AACAGTAACAGTAACAATACGGTACACAAAGTACCTCATCAGAACAAATCCGA
Found at i:26569427 original size:11 final size:11
Alignment explanation
Indices: 26569411--26569466 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
26569401 AATGATTGAT
26569411 ATGATATGCAC
1 ATGATATGCAC
*
26569422 ATGATATG--T
1 ATGATATGCAC
26569431 ATGATATGCAC
1 ATGATATGCAC
*
26569442 ATGATATGTAC
1 ATGATATGCAC
*
26569453 --GAAATGCAC
1 ATGATATGCAC
26569462 ATGAT
1 ATGAT
26569467 GAATTCATAA
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.38, C:0.12, G:0.20, T:0.30
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:26569433 original size:20 final size:20
Alignment explanation
Indices: 26569410--26569466 Score: 96
Period size: 20 Copynumber: 2.9 Consensus size: 20
26569400 AAATGATTGA
26569410 TATGATATGCACATGATATG
1 TATGATATGCACATGATATG
26569430 TATGATATGCACATGATATG
1 TATGATATGCACATGATATG
* *
26569450 TACGAAATGCACATGAT
1 TATGATATGCACATGAT
26569467 GAATTCATAA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 35 1.00
ACGTcount: A:0.37, C:0.12, G:0.19, T:0.32
Consensus pattern (20 bp):
TATGATATGCACATGATATG
Found at i:26569607 original size:25 final size:26
Alignment explanation
Indices: 26569516--26569638 Score: 178
Period size: 26 Copynumber: 4.8 Consensus size: 26
26569506 GAGGAAGTGC
*
26569516 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCA
*
26569542 AAAAGAGCTTATGCCCCAGTTTACCA
1 AAAAGGGCTTATGCCCCAGTTTACCA
**
26569568 AAAAGGGCTTATGCCCCAGTTTATTA
1 AAAAGGGCTTATGCCCCAGTTTACCA
*
26569594 AAAAGGGCTT-TGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCA
*
26569619 AAAAGGGCTT-TACCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
26569639 ATTAAAGAGG
Statistics
Matches: 88, Mismatches: 9, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
25 31 0.35
26 57 0.65
ACGTcount: A:0.29, C:0.25, G:0.20, T:0.25
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTACCA
Found at i:26569841 original size:42 final size:42
Alignment explanation
Indices: 26569782--26569874 Score: 159
Period size: 42 Copynumber: 2.2 Consensus size: 42
26569772 GTAGTCTCCC
*
26569782 CAAATGGGCTTGCATACATTCATTGGTATTTCATGTGATATT
1 CAAATGGGCTTGCATACATTCATTGATATTTCATGTGATATT
*
26569824 CAAATGGGCTTGCATACATTCATTGATATTTCATGTGTTATT
1 CAAATGGGCTTGCATACATTCATTGATATTTCATGTGATATT
*
26569866 GAAATGGGC
1 CAAATGGGC
26569875 CTATGGGCCA
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
42 48 1.00
ACGTcount: A:0.27, C:0.14, G:0.20, T:0.39
Consensus pattern (42 bp):
CAAATGGGCTTGCATACATTCATTGATATTTCATGTGATATT
Found at i:26569933 original size:31 final size:31
Alignment explanation
Indices: 26569898--26569976 Score: 140
Period size: 31 Copynumber: 2.5 Consensus size: 31
26569888 CATTTACAAT
*
26569898 AAAGGCTTTGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
26569929 AAAGGCTTCGGCCCAGTGATTTGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
26569960 AAAGGCTTCGGCCCAGT
1 AAAGGCTTCGGCCCAGT
26569977 AACCGTTAAA
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 46 1.00
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.29
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:26576536 original size:40 final size:40
Alignment explanation
Indices: 26576492--26576663 Score: 222
Period size: 40 Copynumber: 4.3 Consensus size: 40
26576482 GGACTAAGAT
*
26576492 CCGAAGGCATTTGTGCGAGATAC-AAATTCCGGGTTAAGCC
1 CCGAAGGCATTTGTGCGAGATACTAAA-TCCGGGTTAAGTC
*
26576532 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGATACTAAATCCGGGTTAAGTC
* * * *
26576572 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTC
1 CCGAAGGCATTTGTGCGAGATACTAAATCCGGGTTAAGTC
* * * * *
26576612 CCGAAGGCA-TTGTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTTGTGCGAGATACTAAATCCGGGTTAAGTC
26576651 CCGAAGGCATTTG
1 CCGAAGGCATTTG
26576664 AACGAGGAGC
Statistics
Matches: 118, Mismatches: 12, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
39 34 0.29
40 81 0.69
41 3 0.03
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCGAGATACTAAATCCGGGTTAAGTC
Found at i:26576577 original size:80 final size:79
Alignment explanation
Indices: 26576492--26576663 Score: 220
Period size: 79 Copynumber: 2.2 Consensus size: 79
26576482 GGACTAAGAT
*
26576492 CCGAAGGCATTTGTGCGAGATA-CAAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACT
1 CCGAAGGCATTTGTGCGAGATATCAAA-TCCGGGTTAAGCCCCGAAGG-CATTGTGCGAGATACT
* *
26576556 AAATCCGGGTTAAGTC
64 AAAACCGGGCTAAGTC
* * * * * * *
26576572 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATATCAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA
*
26576637 AACCGGGCTATGTC
66 AACCGGGCTAAGTC
26576651 CCGAAGGCATTTG
1 CCGAAGGCATTTG
26576664 AACGAGGAGC
Statistics
Matches: 79, Mismatches: 12, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
79 38 0.48
80 38 0.48
81 3 0.04
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATATCAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA
AACCGGGCTAAGTC
Found at i:26576681 original size:79 final size:80
Alignment explanation
Indices: 26576519--26576696 Score: 191
Period size: 79 Copynumber: 2.2 Consensus size: 80
26576509 AGATACAAAT
* * * *
26576519 TCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
** * *
26576584 GTGCGAGTTATTAAA
66 GAACGAGTGACTAAA
* * * * *
26576599 TCCGGGTTATGTCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
*
26576663 GAACGAG-GAGCTATA
66 GAACGAGTGA-CTAAA
*
26576678 TCC-GGTTAAATCCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
26576697 TACGTGATTT
Statistics
Matches: 81, Mismatches: 16, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
78 15 0.19
79 48 0.59
80 18 0.22
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
GAACGAGTGACTAAA
Found at i:26583492 original size:40 final size:40
Alignment explanation
Indices: 26583448--26583619 Score: 222
Period size: 40 Copynumber: 4.3 Consensus size: 40
26583438 GGACTAAGAT
*
26583448 CCGAAGGCATTTGTGCGAGATAC-AAATTCCGGGTTAAGCC
1 CCGAAGGCATTTGTGCGAGATACTAAA-TCCGGGTTAAGTC
*
26583488 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGATACTAAATCCGGGTTAAGTC
* * * *
26583528 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTC
1 CCGAAGGCATTTGTGCGAGATACTAAATCCGGGTTAAGTC
* * * * *
26583568 CCGAAGGCA-TTGTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTTGTGCGAGATACTAAATCCGGGTTAAGTC
26583607 CCGAAGGCATTTG
1 CCGAAGGCATTTG
26583620 AACGAGGAGC
Statistics
Matches: 118, Mismatches: 12, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
39 34 0.29
40 81 0.69
41 3 0.03
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCGAGATACTAAATCCGGGTTAAGTC
Found at i:26583533 original size:80 final size:79
Alignment explanation
Indices: 26583448--26583619 Score: 220
Period size: 79 Copynumber: 2.2 Consensus size: 79
26583438 GGACTAAGAT
*
26583448 CCGAAGGCATTTGTGCGAGATA-CAAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACT
1 CCGAAGGCATTTGTGCGAGATATCAAA-TCCGGGTTAAGCCCCGAAGG-CATTGTGCGAGATACT
* *
26583512 AAATCCGGGTTAAGTC
64 AAAACCGGGCTAAGTC
* * * * * * *
26583528 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATATCAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA
*
26583593 AACCGGGCTATGTC
66 AACCGGGCTAAGTC
26583607 CCGAAGGCATTTG
1 CCGAAGGCATTTG
26583620 AACGAGGAGC
Statistics
Matches: 79, Mismatches: 12, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
79 38 0.48
80 38 0.48
81 3 0.04
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATATCAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA
AACCGGGCTAAGTC
Found at i:26583637 original size:79 final size:80
Alignment explanation
Indices: 26583475--26583652 Score: 191
Period size: 79 Copynumber: 2.2 Consensus size: 80
26583465 AGATACAAAT
* * * *
26583475 TCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
** * *
26583540 GTGCGAGTTATTAAA
66 GAACGAGTGACTAAA
* * * * *
26583555 TCCGGGTTATGTCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
*
26583619 GAACGAG-GAGCTATA
66 GAACGAGTGA-CTAAA
*
26583634 TCC-GGTTAAATCCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
26583653 TACGTGATTT
Statistics
Matches: 81, Mismatches: 16, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
78 15 0.19
79 48 0.59
80 18 0.22
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
GAACGAGTGACTAAA
Found at i:26585648 original size:18 final size:18
Alignment explanation
Indices: 26585627--26585682 Score: 67
Period size: 18 Copynumber: 3.1 Consensus size: 18
26585617 TATCAGTTAG
* *
26585627 TTATTCGGTAACAATCAA
1 TTATTCAGTAATAATCAA
* *
26585645 TTATTCAATAATAATCAG
1 TTATTCAGTAATAATCAA
*
26585663 TTATTCAGTATTAATCAA
1 TTATTCAGTAATAATCAA
26585681 TT
1 TT
26585683 GATCGGTTAT
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
18 31 1.00
ACGTcount: A:0.39, C:0.12, G:0.07, T:0.41
Consensus pattern (18 bp):
TTATTCAGTAATAATCAA
Found at i:26585715 original size:18 final size:18
Alignment explanation
Indices: 26585689--26585762 Score: 69
Period size: 18 Copynumber: 4.1 Consensus size: 18
26585679 AATTGATCGG
*
26585689 TTATCCAGTAACAATCAA
1 TTATTCAGTAACAATCAA
*
26585707 TTATTCAGTAAAAATCAGA
1 TTATTCAGTAACAATCA-A
* * *
26585726 -TATACGGTAACAATTAAA
1 TTATTCAGTAACAA-TCAA
*
26585744 TTATTCAGTAACAGTCAA
1 TTATTCAGTAACAATCAA
26585762 T
1 T
26585763 CTTTCCAGTT
Statistics
Matches: 43, Mismatches: 10, Indels: 6
0.73 0.17 0.10
Matches are distributed among these distances:
18 30 0.70
19 13 0.30
ACGTcount: A:0.45, C:0.15, G:0.09, T:0.31
Consensus pattern (18 bp):
TTATTCAGTAACAATCAA
Found at i:26585992 original size:53 final size:53
Alignment explanation
Indices: 26585878--26585999 Score: 136
Period size: 53 Copynumber: 2.3 Consensus size: 53
26585868 CTGGAACAGT
* * * * *
26585878 AACAGTAACAATAGCAGTACAGTACACAGAGCACCTCATTAGAATAAATCCGG
1 AACAGTAACAATAACAGTACAGTACACAAAGCACCTCATCAGAACAAATCCGA
** * * * *
26585931 AATGGTAACAATAACAGTACGGTACACAAAGTACCTTATCGGAACAAATCCGA
1 AACAGTAACAATAACAGTACAGTACACAAAGCACCTCATCAGAACAAATCCGA
*
26585984 AACAGTAACAGTAACA
1 AACAGTAACAATAACA
26586000 ATATCCGACA
Statistics
Matches: 55, Mismatches: 14, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
53 55 1.00
ACGTcount: A:0.45, C:0.21, G:0.16, T:0.17
Consensus pattern (53 bp):
AACAGTAACAATAACAGTACAGTACACAAAGCACCTCATCAGAACAAATCCGA
Found at i:26586198 original size:16 final size:16
Alignment explanation
Indices: 26586169--26586202 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
26586159 TAATTCACTT
26586169 TTCAATTTTCAATTAA
1 TTCAATTTTCAATTAA
26586185 TTCATATTTT-AATTAA
1 TTCA-ATTTTCAATTAA
26586201 TT
1 TT
26586203 AACTATATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 12 0.71
17 5 0.29
ACGTcount: A:0.35, C:0.09, G:0.00, T:0.56
Consensus pattern (16 bp):
TTCAATTTTCAATTAA
Found at i:26587099 original size:30 final size:28
Alignment explanation
Indices: 26587041--26587099 Score: 66
Period size: 30 Copynumber: 2.0 Consensus size: 28
26587031 TAATTTAATG
*
26587041 ATAATAAATACATTAATTTTACTTAAATA
1 ATAATAAATACATCAATTTTAC-TAAATA
26587070 ATAAGTAAATACATGCATATTTTAC-AAATA
1 ATAA-TAAATACAT-CA-ATTTTACTAAATA
26587100 TATGTACAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
29 4 0.15
30 14 0.54
31 1 0.04
32 7 0.27
ACGTcount: A:0.51, C:0.08, G:0.03, T:0.37
Consensus pattern (28 bp):
ATAATAAATACATCAATTTTACTAAATA
Found at i:26590518 original size:32 final size:32
Alignment explanation
Indices: 26590474--26590543 Score: 124
Period size: 32 Copynumber: 2.2 Consensus size: 32
26590464 AACCTTAATA
26590474 GGAAAATCCAATGGGACAAAACCTCGGTTAAG
1 GGAAAATCCAATGGGACAAAACCTCGGTTAAG
26590506 GGAAAA-CTCAATGGGACAAAACCTCGGTTAAG
1 GGAAAATC-CAATGGGACAAAACCTCGGTTAAG
26590538 GGAAAA
1 GGAAAA
26590544 AGAGTACAAC
Statistics
Matches: 37, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
31 1 0.03
32 36 0.97
ACGTcount: A:0.43, C:0.17, G:0.26, T:0.14
Consensus pattern (32 bp):
GGAAAATCCAATGGGACAAAACCTCGGTTAAG
Found at i:26592530 original size:18 final size:18
Alignment explanation
Indices: 26592507--26592548 Score: 84
Period size: 18 Copynumber: 2.3 Consensus size: 18
26592497 ATGCCAAGTG
26592507 GTAAACGCATTTGTATTA
1 GTAAACGCATTTGTATTA
26592525 GTAAACGCATTTGTATTA
1 GTAAACGCATTTGTATTA
26592543 GTAAAC
1 GTAAAC
26592549 TTCTAGCATG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.36, C:0.12, G:0.17, T:0.36
Consensus pattern (18 bp):
GTAAACGCATTTGTATTA
Found at i:26594389 original size:33 final size:33
Alignment explanation
Indices: 26594350--26594415 Score: 123
Period size: 33 Copynumber: 2.0 Consensus size: 33
26594340 TAGTTTTAGG
*
26594350 TTAATTTTTTTATCTGATTTTTCAAAATCGTGA
1 TTAATTTTTTTATCTAATTTTTCAAAATCGTGA
26594383 TTAATTTTTTTATCTAATTTTTCAAAATCGTGA
1 TTAATTTTTTTATCTAATTTTTCAAAATCGTGA
26594416 AACTAAAAAT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.29, C:0.09, G:0.08, T:0.55
Consensus pattern (33 bp):
TTAATTTTTTTATCTAATTTTTCAAAATCGTGA
Found at i:26594983 original size:27 final size:27
Alignment explanation
Indices: 26594952--26595006 Score: 76
Period size: 27 Copynumber: 2.1 Consensus size: 27
26594942 ATTCAATTTA
*
26594952 ATTTTGATTCTAACT-TTTTTACTTTT
1 ATTTTTATTCTAACTATTTTTACTTTT
* *
26594978 ATTTTTATTTTAATTATTTTTACTTTT
1 ATTTTTATTCTAACTATTTTTACTTTT
26595005 AT
1 AT
26595007 CAAAAATTAA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
26 12 0.48
27 13 0.52
ACGTcount: A:0.22, C:0.07, G:0.02, T:0.69
Consensus pattern (27 bp):
ATTTTTATTCTAACTATTTTTACTTTT
Found at i:26594996 original size:15 final size:16
Alignment explanation
Indices: 26594976--26595005 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
26594966 TTTTTTACTT
26594976 TTATTTTTA-TTTTAA
1 TTATTTTTACTTTTAA
26594991 TTATTTTTACTTTTA
1 TTATTTTTACTTTTA
26595006 TCAAAAATTA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.23, C:0.03, G:0.00, T:0.73
Consensus pattern (16 bp):
TTATTTTTACTTTTAA
Found at i:26595462 original size:25 final size:25
Alignment explanation
Indices: 26595423--26595470 Score: 62
Period size: 24 Copynumber: 1.9 Consensus size: 25
26595413 ACAAAAATTG
* *
26595423 TTTTAAAAATTAAAAGTTTTTTTTTA
1 TTTTAAAAA-TAAAAATATTTTTTTA
26595449 TTTT-AAAATAAAAATATTTTTT
1 TTTTAAAAATAAAAATATTTTTT
26595471 GAACAATTAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 12 0.60
25 4 0.20
26 4 0.20
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (25 bp):
TTTTAAAAATAAAAATATTTTTTTA
Found at i:26599288 original size:43 final size:42
Alignment explanation
Indices: 26599231--26599393 Score: 177
Period size: 43 Copynumber: 3.8 Consensus size: 42
26599221 CAATGCCAAC
* * * *
26599231 GTCCCAGACGTGGTCTTACATGTAATCAAATATCGTTGCCATT
1 GTCCCAGACATGGTCTTACACGAAATCAAATATCGATGCCA-T
26599274 GTCCCAGACATGGTCTTACACGAAATCAAATA-CGATGCCGAT
1 GTCCCAGACATGGTCTTACACGAAATCAAATATCGATGCC-AT
* * *
26599316 GTCCCAAACATGGTCTTACACGTAAATCTCAA-ATCGATGCCAAC
1 GTCCCAGACATGGTCTTACACG-AAATC-AAATATCGATGCC-AT
* * *
26599360 ATCCCAGACGTGGTCTTACACGAAATCACATATC
1 GTCCCAGACATGGTCTTACACGAAATCAAATATC
26599394 AAAAATCCTA
Statistics
Matches: 102, Mismatches: 13, Indels: 10
0.82 0.10 0.08
Matches are distributed among these distances:
42 29 0.28
43 44 0.43
44 29 0.28
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.25
Consensus pattern (42 bp):
GTCCCAGACATGGTCTTACACGAAATCAAATATCGATGCCAT
Found at i:26601498 original size:19 final size:20
Alignment explanation
Indices: 26601463--26601503 Score: 66
Period size: 19 Copynumber: 2.0 Consensus size: 20
26601453 GGTTAATTTC
26601463 ATCTAAAATCGATTAAAAATA
1 ATCTAAAATC-ATTAAAAATA
26601484 ATCTAAAAT-ATTAAAAATA
1 ATCTAAAATCATTAAAAATA
26601503 A
1 A
26601504 ATAAATATTT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
19 11 0.55
21 9 0.45
ACGTcount: A:0.61, C:0.07, G:0.02, T:0.29
Consensus pattern (20 bp):
ATCTAAAATCATTAAAAATA
Found at i:26601511 original size:17 final size:19
Alignment explanation
Indices: 26601474--26601512 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
26601464 TCTAAAATCG
*
26601474 ATTAAAAATAATCTAAAAT
1 ATTAAAAATAATATAAAAT
26601493 ATTAAAAATAA-AT-AAAT
1 ATTAAAAATAATATAAAAT
26601510 ATT
1 ATT
26601513 TTCAAAAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 7 0.37
18 1 0.05
19 11 0.58
ACGTcount: A:0.64, C:0.03, G:0.00, T:0.33
Consensus pattern (19 bp):
ATTAAAAATAATATAAAAT
Found at i:26603073 original size:13 final size:14
Alignment explanation
Indices: 26603047--26603078 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
26603037 CGAAATAGGG
26603047 AGAAA-AAAAGGAA
1 AGAAAGAAAAGGAA
26603060 AGAAAGAAAA-GAA
1 AGAAAGAAAAGGAA
26603073 AGAAAG
1 AGAAAG
26603079 GAGAAACTAG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 14 0.78
14 4 0.22
ACGTcount: A:0.75, C:0.00, G:0.25, T:0.00
Consensus pattern (14 bp):
AGAAAGAAAAGGAA
Found at i:26605819 original size:26 final size:26
Alignment explanation
Indices: 26605790--26605897 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
26605780 TGGTACAAAT
26605790 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* * *
26605816 TGATAATGGATTAGATAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
26605842 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
26605868 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
26605894 TGAT
1 TGAT
26605898 GGTCATTTCA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.33, C:0.07, G:0.23, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:26607542 original size:27 final size:27
Alignment explanation
Indices: 26607500--26607586 Score: 97
Period size: 27 Copynumber: 3.2 Consensus size: 27
26607490 AGGAAGCGTC
*
26607500 CTGGTGGCTATGCCACAATTATCTAAT
1 CTGGTGGCTCTGCCACAATTATCTAAT
* **
26607527 CTGGTGGCTCTACCAC-ATATATCTGTT
1 CTGGTGGCTCTGCCACAAT-TATCTAAT
*
26607554 CTGGTGGCTCTGCCACAA-TATCTGTAT
1 CTGGTGGCTCTGCCACAATTATCT-AAT
26607581 CTGGTG
1 CTGGTG
26607587 ACTTCGTCAC
Statistics
Matches: 50, Mismatches: 7, Indels: 6
0.79 0.11 0.10
Matches are distributed among these distances:
26 7 0.14
27 42 0.84
28 1 0.02
ACGTcount: A:0.20, C:0.24, G:0.22, T:0.34
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTAAT
Found at i:26607597 original size:27 final size:26
Alignment explanation
Indices: 26607500--26607604 Score: 95
Period size: 27 Copynumber: 3.9 Consensus size: 26
26607490 AGGAAGCGTC
* * **
26607500 CTGGTGGCTATGCCACAATTATCTAAT
1 CTGGTGACTCTGCCACAA-TATCTGTT
* *
26607527 CTGGTGGCTCTACCACATATATCTGTT
1 CTGGTGACTCTGCCACA-ATATCTGTT
*
26607554 CTGGTGGCTCTGCCACAATATCTGTAT
1 CTGGTGACTCTGCCACAATATCTGT-T
*
26607581 CTGGTGACT-TCGTCACAATATCTG
1 CTGGTGACTCT-GCCACAATATCTG
26607605 GCAGCCTCGC
Statistics
Matches: 68, Mismatches: 7, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
26 9 0.13
27 58 0.85
28 1 0.01
ACGTcount: A:0.21, C:0.25, G:0.20, T:0.34
Consensus pattern (26 bp):
CTGGTGACTCTGCCACAATATCTGTT
Found at i:26610049 original size:17 final size:17
Alignment explanation
Indices: 26610027--26610062 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
26610017 TTCATCTCAT
26610027 AATTCTATCATCATGCC
1 AATTCTATCATCATGCC
26610044 AATTCTATCATCATGCC
1 AATTCTATCATCATGCC
26610061 AA
1 AA
26610063 AGAGTTTTGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.33, C:0.28, G:0.06, T:0.33
Consensus pattern (17 bp):
AATTCTATCATCATGCC
Found at i:26615936 original size:27 final size:27
Alignment explanation
Indices: 26615906--26616083 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
26615896 ATATTGAGCC
* * * *
26615906 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
26615933 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
26615960 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
26615988 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
26616015 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
26616042 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
26616069 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
26616084 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:26616045 original size:82 final size:81
Alignment explanation
Indices: 26615927--26616082 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
26615917 TGCTATATAA
* *
26615927 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
26615992 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
26616009 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
26616073 CACTTAGTGC
65 CACTTAGTGC
26616083 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Done.