Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 82679320
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4050000 characters in sequence are not A, C, G, or T
File 87 of 255
Found at i:26616649 original size:13 final size:13
Alignment explanation
Indices: 26616631--26616655 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
26616621 TACTAAATTT
26616631 TCATGGATTCAAG
1 TCATGGATTCAAG
26616644 TCATGGATTCAA
1 TCATGGATTCAA
26616656 TATACCATTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.32
Consensus pattern (13 bp):
TCATGGATTCAAG
Found at i:26627101 original size:14 final size:14
Alignment explanation
Indices: 26627082--26627108 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
26627072 AGAAATGTGA
26627082 AATTTAAATTTTTG
1 AATTTAAATTTTTG
26627096 AATTTAAATTTTT
1 AATTTAAATTTTT
26627109 AAAAAGCAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.37, C:0.00, G:0.04, T:0.59
Consensus pattern (14 bp):
AATTTAAATTTTTG
Found at i:26633993 original size:22 final size:18
Alignment explanation
Indices: 26633951--26633986 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
26633941 TACAAATCAA
26633951 AATTGGATTGAGTCTCTC
1 AATTGGATTGAGTCTCTC
26633969 AATTGGATTGAGTCTCTC
1 AATTGGATTGAGTCTCTC
26633987 TTTCAATCTC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.22, C:0.17, G:0.22, T:0.39
Consensus pattern (18 bp):
AATTGGATTGAGTCTCTC
Found at i:26638064 original size:25 final size:25
Alignment explanation
Indices: 26638030--26638085 Score: 76
Period size: 25 Copynumber: 2.2 Consensus size: 25
26638020 TTCCTTATAA
**
26638030 ACTTTAAATTAAGAATTCTATTAGG
1 ACTTTAAATTAAGAATTAGATTAGG
*
26638055 ACTTTAAATTAGGAATTAGATTAGG
1 ACTTTAAATTAAGAATTAGATTAGG
*
26638080 ATTTTA
1 ACTTTA
26638086 CTTTATAATT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.39, C:0.05, G:0.14, T:0.41
Consensus pattern (25 bp):
ACTTTAAATTAAGAATTAGATTAGG
Found at i:26640942 original size:40 final size:40
Alignment explanation
Indices: 26640880--26641061 Score: 260
Period size: 40 Copynumber: 4.6 Consensus size: 40
26640870 TATTCGGATG
* * *
26640880 ATATCCGGGCTAAATCCTGAAGGCCTTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
*
26640920 ATATCCGGGCTAAGTCCCGAAGGCCTTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
*
26640960 ATATCCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
26641000 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
* *
26641040 ATATTC-GGCTAATTCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
26641062 TACTTGGATT
Statistics
Matches: 131, Mismatches: 10, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
39 14 0.11
40 115 0.88
41 2 0.02
ACGTcount: A:0.23, C:0.24, G:0.27, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:26647868 original size:40 final size:40
Alignment explanation
Indices: 26647813--26647994 Score: 242
Period size: 40 Copynumber: 4.6 Consensus size: 40
26647803 TATTCGGATG
* *
26647813 ATATCCGAGCTAAGTCCCGAAGGCCTTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* * *
26647853 ATATCCGGGCTAAGTCTCGAAGACATTTATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
*
26647893 ATATCCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* * *
26647933 ATATCCCGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
* *
26647973 ATAT-CTGGCTAATTCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
26647995 TACTTGGGTT
Statistics
Matches: 125, Mismatches: 16, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
39 15 0.12
40 108 0.86
41 2 0.02
ACGTcount: A:0.24, C:0.24, G:0.25, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:26652748 original size:25 final size:25
Alignment explanation
Indices: 26652714--26652764 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 25
26652704 TTCCTTATAA
* **
26652714 ACTTTAAATTAGGAATTCTATTAGG
1 ACTTTAAATTAGAAATTAGATTAGG
26652739 ACTTTAAATTAGAAATTAGATTAGG
1 ACTTTAAATTAGAAATTAGATTAGG
26652764 A
1 A
26652765 TTTTCCTTTG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.41, C:0.06, G:0.16, T:0.37
Consensus pattern (25 bp):
ACTTTAAATTAGAAATTAGATTAGG
Found at i:26655094 original size:26 final size:26
Alignment explanation
Indices: 26655042--26655094 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
26655032 AAAATAATTT
* *
26655042 TTTTAAAATATATAAAAATACATAAA
1 TTTTAAAAAATATAAAAATACAAAAA
26655068 TTTTAAAAAATATGAAAAATA-AAAAA
1 TTTTAAAAAATAT-AAAAATACAAAAA
26655094 T
1 T
26655095 AAGTAAAATA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 17 0.71
27 7 0.29
ACGTcount: A:0.64, C:0.02, G:0.02, T:0.32
Consensus pattern (26 bp):
TTTTAAAAAATATAAAAATACAAAAA
Found at i:26655102 original size:16 final size:16
Alignment explanation
Indices: 26655071--26655104 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
26655061 ACATAAATTT
*
26655071 TAAAAAATATGAAAAA
1 TAAAAAATAAGAAAAA
*
26655087 TAAAAAATAAGTAAAA
1 TAAAAAATAAGAAAAA
26655103 TA
1 TA
26655105 TTTCAAAATA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.74, C:0.00, G:0.06, T:0.21
Consensus pattern (16 bp):
TAAAAAATAAGAAAAA
Found at i:26659859 original size:30 final size:30
Alignment explanation
Indices: 26659815--26659883 Score: 88
Period size: 30 Copynumber: 2.3 Consensus size: 30
26659805 TAAAGATAAC
*
26659815 AAGAAAACC-GAATAAAGAAATCCAAG-ATA
1 AAGAAACCCAGAATAAAGAAAT-CAAGAATA
* *
26659844 GAGAAACCCAGAATAAAGAAATCTAGAATA
1 AAGAAACCCAGAATAAAGAAATCAAGAATA
26659874 AAGAAACCCA
1 AAGAAACCCA
26659884 AGATACGATA
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
29 10 0.29
30 24 0.71
ACGTcount: A:0.59, C:0.16, G:0.14, T:0.10
Consensus pattern (30 bp):
AAGAAACCCAGAATAAAGAAATCAAGAATA
Found at i:26659863 original size:15 final size:15
Alignment explanation
Indices: 26659815--26659883 Score: 70
Period size: 15 Copynumber: 4.7 Consensus size: 15
26659805 TAAAGATAAC
*
26659815 AAGAAAACC-GAATA
1 AAGAAACCCAGAATA
*
26659829 AAGAAATCCA-AGATA
1 AAGAAACCCAGA-ATA
*
26659844 GAGAAACCCAGAATA
1 AAGAAACCCAGAATA
* *
26659859 AAGAAATCTAGAATA
1 AAGAAACCCAGAATA
26659874 AAGAAACCCA
1 AAGAAACCCA
26659884 AGATACGATA
Statistics
Matches: 44, Mismatches: 8, Indels: 5
0.77 0.14 0.09
Matches are distributed among these distances:
14 9 0.20
15 34 0.77
16 1 0.02
ACGTcount: A:0.59, C:0.16, G:0.14, T:0.10
Consensus pattern (15 bp):
AAGAAACCCAGAATA
Found at i:26666727 original size:49 final size:49
Alignment explanation
Indices: 26666654--26666841 Score: 259
Period size: 49 Copynumber: 3.8 Consensus size: 49
26666644 TGAGGTCACG
* *
26666654 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATTGGTCGCA
* * * ** * *
26666703 TGTGTAGTACTAAGTGCAGACTACTATGCGTACCCGATAACTTCTATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAA-TT-GGTCGCA
26666754 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATTGGTCGCA
* *
26666803 TGTGTATTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATA
26666842 GCCTTGTCTA
Statistics
Matches: 120, Mismatches: 17, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
49 76 0.63
50 4 0.03
51 40 0.33
ACGTcount: A:0.27, C:0.19, G:0.24, T:0.30
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATTGGTCGCA
Found at i:26666827 original size:100 final size:100
Alignment explanation
Indices: 26666649--26666841 Score: 341
Period size: 100 Copynumber: 1.9 Consensus size: 100
26666639 TATTGTGAGG
*
26666649 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCATGTGTAGTACT
*
26666714 AAGTGCAGACTACTATGCGTACCCGATAACTTCTA
66 AAGTGCAGACTACTATGCGTACCAGATAACTTCTA
* *
26666749 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATTGGTCGCATGTGTATTACT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCATGTGTAGTACT
*
26666814 AAGTGCAGGCTACTATGCGTACCAGATA
66 AAGTGCAGACTACTATGCGTACCAGATA
26666842 GCCTTGTCTA
Statistics
Matches: 88, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
100 88 1.00
ACGTcount: A:0.26, C:0.20, G:0.24, T:0.30
Consensus pattern (100 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCATGTGTAGTACT
AAGTGCAGACTACTATGCGTACCAGATAACTTCTA
Found at i:26673817 original size:39 final size:40
Alignment explanation
Indices: 26673718--26673941 Score: 269
Period size: 40 Copynumber: 5.6 Consensus size: 40
26673708 CGAATGATGT
* * * *
26673718 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
26673758 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
* * *
26673798 CCGGGTTAAG-CCCGAAGGCATTGGTACGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
26673836 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
26673877 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
26673917 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
26673942 AACGAGTAGC
Statistics
Matches: 162, Mismatches: 15, Indels: 14
0.85 0.08 0.07
Matches are distributed among these distances:
39 34 0.21
40 118 0.73
41 10 0.06
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:26673963 original size:119 final size:119
Alignment explanation
Indices: 26673717--26673974 Score: 301
Period size: 119 Copynumber: 2.2 Consensus size: 119
26673707 TCGAATGATG
* *
26673717 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATTT
* * *
26673782 GTGCGAGATACTAATTCCGGGTTAAGCCCGAAGGCATTGGTACGAGTTACTAAA
66 GTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAAA
* * * *
26673836 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAACCGGGCTAAG-TCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAACCGGACTAAGAT-CCGAAGGCAT
* * * *
26673899 TTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATA
64 TTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-CTAAA
* *
26673956 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
26673975 TACGTGATTT
Statistics
Matches: 119, Mismatches: 15, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
118 3 0.03
119 84 0.71
120 32 0.27
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (119 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATTT
GTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAAA
Found at i:26680222 original size:39 final size:40
Alignment explanation
Indices: 26680108--26680289 Score: 210
Period size: 40 Copynumber: 4.6 Consensus size: 40
26680098 GCTACTCGTT
* * *
26680108 CAAATGCCTTCGGGACATAGCCCTG-TTATAGTAACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
26680148 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
26680188 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
26680227 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
26680268 CAAA-GCCTTCGGGACTTAGCCC
1 CAAATGCCTTCGGGACTTAGCCC
26680290 AGACATCATT
Statistics
Matches: 122, Mismatches: 15, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
38 2 0.02
39 33 0.27
40 74 0.61
41 13 0.11
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:26680252 original size:79 final size:80
Alignment explanation
Indices: 26680110--26680289 Score: 206
Period size: 79 Copynumber: 2.3 Consensus size: 80
26680100 TACTCGTTCA
* * *
26680110 AATGCCTTCGGGACATAGCCCTGTTATAGTAACTAGCACAAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAACCCGGAT
* *
26680175 TTAGTAAC-TCGCACC
66 ATAGTAACTTAGCA-C
* **
26680190 AATGCCTTCGGG-CTTAGCCCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 AATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTAGCACAAATGCCTTCGGGA-CTTAACCCGG
* *
26680252 ATATGGTCACTTAGCAC
64 ATATAGTAACTTAGCAC
*
26680269 AAAGCCTTCGGGACTTAGCCC
1 AATGCCTTCGGGACTTAGCCC
26680290 AGACATCATT
Statistics
Matches: 85, Mismatches: 11, Indels: 8
0.82 0.11 0.08
Matches are distributed among these distances:
78 4 0.05
79 57 0.67
80 24 0.28
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (80 bp):
AATGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAACCCGGAT
ATAGTAACTTAGCAC
Found at i:26681586 original size:85 final size:85
Alignment explanation
Indices: 26681457--26681635 Score: 349
Period size: 85 Copynumber: 2.1 Consensus size: 85
26681447 TATTTTATTG
26681457 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
26681522 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
*
26681542 CCCATGCTCTTTATTTTATTGATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
26681607 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
26681627 CCCATGCTC
1 CCCATGCTC
26681636 ATGGCCGGCC
Statistics
Matches: 93, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
85 93 1.00
ACGTcount: A:0.26, C:0.27, G:0.09, T:0.38
Consensus pattern (85 bp):
CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
TAGCCATAACATCTTGTCCA
Found at i:26688208 original size:79 final size:81
Alignment explanation
Indices: 26688095--26688277 Score: 232
Period size: 79 Copynumber: 2.3 Consensus size: 81
26688085 TACTCGTTCA
* *
26688095 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
* *
26688158 ATTTAGTAAC-TCGCACC
65 ATATAGTAACTTAGCA-C
**
26688175 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
* *
26688238 TATGGTCACTTAGCAC
66 TATAGTAACTTAGCAC
*
26688254 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
26688278 CATCATTCGA
Statistics
Matches: 90, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 59 0.66
80 28 0.31
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
TATAGTAACTTAGCAC
Found at i:26688277 original size:40 final size:40
Alignment explanation
Indices: 26688074--26688277 Score: 238
Period size: 40 Copynumber: 5.1 Consensus size: 40
26688064 TCGAATTTAA
** *
26688074 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
26688114 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
26688154 CCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
26688193 CCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
26688233 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
26688273 CCGGA
1 CCGGA
26688278 CATCATTCGA
Statistics
Matches: 141, Mismatches: 16, Indels: 14
0.82 0.09 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.23
40 94 0.67
41 12 0.09
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:26689568 original size:85 final size:85
Alignment explanation
Indices: 26689439--26689617 Score: 358
Period size: 85 Copynumber: 2.1 Consensus size: 85
26689429 TATTTTATTG
26689439 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
26689504 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
26689524 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
26689589 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
26689609 CCCATGCTC
1 CCCATGCTC
26689618 ATGGCCGGCC
Statistics
Matches: 94, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
85 94 1.00
ACGTcount: A:0.26, C:0.27, G:0.08, T:0.38
Consensus pattern (85 bp):
CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
TAGCCATAACATCTTGTCCA
Found at i:26692251 original size:40 final size:40
Alignment explanation
Indices: 26692014--26692237 Score: 278
Period size: 40 Copynumber: 5.6 Consensus size: 40
26692004 CGAATGATGT
* * * *
26692014 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
26692054 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
*
26692094 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
26692132 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
26692173 CAGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
26692213 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
26692238 AACGAGTAGC
Statistics
Matches: 162, Mismatches: 15, Indels: 14
0.85 0.08 0.07
Matches are distributed among these distances:
39 34 0.21
40 118 0.73
41 10 0.06
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:26692259 original size:119 final size:119
Alignment explanation
Indices: 26692013--26692270 Score: 292
Period size: 119 Copynumber: 2.2 Consensus size: 119
26692003 TCGAATGATG
* * *
26692013 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATAACAGGACTAAGATCCGAAGGCATTT
* **
26692078 GTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAA
66 GTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAAA
* * * *
26692132 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAACAGGGCTAAG-TCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAACAGGACTAAGAT-CCGAAGGCAT
* * * *
26692195 TTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATA
64 TTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-CTAAA
* *
26692252 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
26692271 TACGTGATTT
Statistics
Matches: 118, Mismatches: 16, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
118 3 0.03
119 84 0.71
120 31 0.26
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (119 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATAACAGGACTAAGATCCGAAGGCATTT
GTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAAA
Found at i:26695265 original size:12 final size:13
Alignment explanation
Indices: 26695248--26695276 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
26695238 AAGTATATTA
26695248 TAAAATTTTA-GT
1 TAAAATTTTATGT
26695260 TAAAATTTTATGT
1 TAAAATTTTATGT
26695273 TAAA
1 TAAA
26695277 TAATAAATAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 10 0.62
13 6 0.38
ACGTcount: A:0.45, C:0.00, G:0.07, T:0.48
Consensus pattern (13 bp):
TAAAATTTTATGT
Found at i:26696443 original size:13 final size:12
Alignment explanation
Indices: 26696421--26696451 Score: 53
Period size: 13 Copynumber: 2.5 Consensus size: 12
26696411 GTTAACTGGG
26696421 GAAAATGAAATT
1 GAAAATGAAATT
26696433 GAAAGATGAAATT
1 GAAA-ATGAAATT
26696446 GAAAAT
1 GAAAAT
26696452 CATAATAGAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 6 0.33
13 12 0.67
ACGTcount: A:0.58, C:0.00, G:0.19, T:0.23
Consensus pattern (12 bp):
GAAAATGAAATT
Found at i:26703946 original size:27 final size:27
Alignment explanation
Indices: 26703915--26703976 Score: 97
Period size: 27 Copynumber: 2.3 Consensus size: 27
26703905 TATGTTAGTC
26703915 ATTTTACACGACAACGGTATTTCGATA
1 ATTTTACACGACAACGGTATTTCGATA
* * *
26703942 GTTTTACACTACAAGGGTATTTCGATA
1 ATTTTACACGACAACGGTATTTCGATA
26703969 ATTTTACA
1 ATTTTACA
26703977 AATTGGGGAT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.32, C:0.16, G:0.15, T:0.37
Consensus pattern (27 bp):
ATTTTACACGACAACGGTATTTCGATA
Found at i:26703997 original size:27 final size:26
Alignment explanation
Indices: 26703956--26704478 Score: 308
Period size: 27 Copynumber: 19.7 Consensus size: 26
26703946 TACACTACAA
*
26703956 GGGTATTTCGATAATTTTACAAATTG
1 GGGTATTTCGGTAATTTTACAAATTG
* * * *
26703982 GGGATGTTTTGGTAATTTTATAAATTAA
1 GGG-TATTTCGGTAATTTTACAAATT-G
* * * * * *
26704010 AGGTGTTTTGATAATTTCACAAATCG
1 GGGTATTTCGGTAATTTTACAAATTG
*
26704036 GGGATATTTCAGTAATTTTACAAATTG
1 GGG-TATTTCGGTAATTTTACAAATTG
* * *
26704063 AGGGTATTTCGGTAATTTTA-GACTCG
1 -GGGTATTTCGGTAATTTTACAAATTG
* * *
26704089 AGCGTATTTCAGTAATTTTACAAATCG
1 -GGGTATTTCGGTAATTTTACAAATTG
** ** * *
26704116 ATTGTATTTTAGTAATTTCAC-AATCG
1 -GGGTATTTCGGTAATTTTACAAATTG
* * *
26704142 AGGGTATTTTGATAATTTTACAAATCG
1 -GGGTATTTCGGTAATTTTACAAATTG
* * *
26704169 AGGGTATTTCAGTAATTTCAC-AATCG
1 -GGGTATTTCGGTAATTTTACAAATTG
** *
26704195 AGGGTATTTTAGTAATTTTAAAAATTG
1 -GGGTATTTCGGTAATTTTACAAATTG
* *
26704222 AGGGTACTTCGGTAA-TTT-CATAATCG
1 -GGGTATTTCGGTAATTTTACA-AATTG
*
26704248 AGGGTATTTTGGTAATTTTACAAATTG
1 -GGGTATTTCGGTAATTTTACAAATTG
**
26704275 AGGGTATTTTAGTAATTTTAC-AATTG
1 -GGGTATTTCGGTAATTTTACAAATTG
** *
26704301 AGGGTATTTCGACAATTTTACAAATCG
1 -GGGTATTTCGGTAATTTTACAAATTG
* * *
26704328 AGGGTATTTCAGTAATTTCAC-AATCG
1 -GGGTATTTCGGTAATTTTACAAATTG
* *
26704354 AGGGTATTTCGATAATTTTACAAATCG
1 -GGGTATTTCGGTAATTTTACAAATTG
* * *
26704381 AGGGTATTTCAGTAATTTCAC-AATCG
1 -GGGTATTTCGGTAATTTTACAAATTG
* *
26704407 AGGGTATTTCGATAATTTTACAAATCG
1 -GGGTATTTCGGTAATTTTACAAATTG
**
26704434 AGGGTATTTCAATAATTTTAC-AATTCG
1 -GGGTATTTCGGTAATTTTACAAATT-G
*
26704461 AGGGTATTTCAGTAATTT
1 -GGGTATTTCGGTAATTT
26704479 CTCTTTATTA
Statistics
Matches: 410, Mismatches: 73, Indels: 27
0.80 0.14 0.05
Matches are distributed among these distances:
25 1 0.00
26 161 0.39
27 241 0.59
28 7 0.02
ACGTcount: A:0.31, C:0.10, G:0.19, T:0.40
Consensus pattern (26 bp):
GGGTATTTCGGTAATTTTACAAATTG
Found at i:26704001 original size:54 final size:53
Alignment explanation
Indices: 26703943--26704054 Score: 118
Period size: 54 Copynumber: 2.1 Consensus size: 53
26703933 ATTTCGATAG
* * * **
26703943 TTTTACACTACAAGG-GTATTTCGATAATTTTACAAATTGGGGATGTTTTGGTAAT
1 TTTTACACTA-AAGGTGT-TTT-GATAATTTCACAAATCGGGGATATTTCAGTAAT
* *
26703998 TTTATAAATTAAAGGTGTTTTGATAATTTCACAAATCGGGGATATTTCAGTAAT
1 TTT-TACACTAAAGGTGTTTTGATAATTTCACAAATCGGGGATATTTCAGTAAT
26704052 TTT
1 TTT
26704055 ACAAATTGAG
Statistics
Matches: 48, Mismatches: 7, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
54 31 0.65
55 10 0.21
56 7 0.15
ACGTcount: A:0.31, C:0.08, G:0.18, T:0.43
Consensus pattern (53 bp):
TTTTACACTAAAGGTGTTTTGATAATTTCACAAATCGGGGATATTTCAGTAAT
Found at i:26704109 original size:53 final size:53
Alignment explanation
Indices: 26704021--26704478 Score: 593
Period size: 53 Copynumber: 8.6 Consensus size: 53
26704011 GGTGTTTTGA
* *
26704021 TAATTTCACAAATCG-GGGATATTTCAGTAATTTTACAAATTGAGGGTATTTCGG
1 TAATTTCAC-AATCGAGGG-TATTTCAGTAATTTTACAAATCGAGGGTATTTCAG
* * * * ** *
26704075 TAATTTTAGACTCGAGCGTATTTCAGTAATTTTACAAATCGATTGTATTTTAG
1 TAATTTCACAATCGAGGGTATTTCAGTAATTTTACAAATCGAGGGTATTTCAG
*
26704128 TAATTTCACAATCGAGGGTATTT-TGATAATTTTACAAATCGAGGGTATTTCAG
1 TAATTTCACAATCGAGGGTATTTCAG-TAATTTTACAAATCGAGGGTATTTCAG
* * * * *
26704181 TAATTTCACAATCGAGGGTATTTTAGTAATTTTAAAAATTGAGGGTACTTCGG
1 TAATTTCACAATCGAGGGTATTTCAGTAATTTTACAAATCGAGGGTATTTCAG
* ** * *
26704234 TAATTTCATAATCGAGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTTAG
1 TAATTTCACAATCGAGGGTATTTCAGTAATTTTACAAATCGAGGGTATTTCAG
* * *
26704287 TAATTTTACAATTGAGGGTATTTC-GACAATTTTACAAATCGAGGGTATTTCAG
1 TAATTTCACAATCGAGGGTATTTCAG-TAATTTTACAAATCGAGGGTATTTCAG
26704340 TAATTTCACAATCGAGGGTATTTC-GATAATTTTACAAATCGAGGGTATTTCAG
1 TAATTTCACAATCGAGGGTATTTCAG-TAATTTTACAAATCGAGGGTATTTCAG
*
26704393 TAATTTCACAATCGAGGGTATTTC-GATAATTTTACAAATCGAGGGTATTTCAA
1 TAATTTCACAATCGAGGGTATTTCAG-TAATTTTACAAATCGAGGGTATTTCAG
*
26704446 TAATTTTACAATTCGAGGGTATTTCAGTAATTT
1 TAATTTCACAA-TCGAGGGTATTTCAGTAATTT
26704479 CTCTTTATTA
Statistics
Matches: 358, Mismatches: 40, Indels: 12
0.87 0.10 0.03
Matches are distributed among these distances:
52 2 0.01
53 326 0.91
54 29 0.08
55 1 0.00
ACGTcount: A:0.32, C:0.11, G:0.19, T:0.39
Consensus pattern (53 bp):
TAATTTCACAATCGAGGGTATTTCAGTAATTTTACAAATCGAGGGTATTTCAG
Found at i:26704832 original size:28 final size:28
Alignment explanation
Indices: 26704795--26704858 Score: 101
Period size: 28 Copynumber: 2.3 Consensus size: 28
26704785 TGGCCCCTTT
* *
26704795 AGGCCCAATCTCGTTCACATGGCCCATC
1 AGGCCCAATCACATTCACATGGCCCATC
*
26704823 AGGCCCAATCACATTCATATGGCCCATC
1 AGGCCCAATCACATTCACATGGCCCATC
26704851 AGGCCCAA
1 AGGCCCAA
26704859 CTACTTCCCA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 33 1.00
ACGTcount: A:0.27, C:0.38, G:0.17, T:0.19
Consensus pattern (28 bp):
AGGCCCAATCACATTCACATGGCCCATC
Found at i:26708246 original size:40 final size:40
Alignment explanation
Indices: 26708202--26708392 Score: 151
Period size: 40 Copynumber: 4.6 Consensus size: 40
26708192 GCTCCTCATT
*
26708202 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAATTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAATTCGCA
* *
26708242 CAAATGCCTTCGGGACTTAACCCTTAACCCGGATT-TAGTAACTCGCA
1 CAAATGCCTTCGGG-----A--CTTAGCCCGG-TTATAGTAATTCGCA
*
26708289 CAAATGCCTTCGGG-CTTAGCCCGG-AATTAGT-ATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAAT-TCGCA
* * * * *
26708328 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGTTATAGT-AATTCGCA
26708369 CAAA-GCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
26708393 ACATCATTCA
Statistics
Matches: 122, Mismatches: 12, Indels: 34
0.73 0.07 0.20
Matches are distributed among these distances:
38 3 0.02
39 29 0.24
40 41 0.34
41 12 0.10
42 1 0.01
45 1 0.01
47 33 0.27
48 2 0.02
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAATTCGCA
Found at i:26708326 original size:39 final size:38
Alignment explanation
Indices: 26708264--26708393 Score: 129
Period size: 39 Copynumber: 3.3 Consensus size: 38
26708254 GGACTTAACC
* *
26708264 CTTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGG
1 CTTAGCCCGGAATTAGT-ACTCGCACAAATGCCTTCGGG
*
26708303 CTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGAT
1 CTTAGCCCGGAATTAGTA-CTCGCACAAATGCCTTCGG-G
* * *
26708343 CTTAGTCCGG-ATATGGTCACTTAGCACAAA-GCCTTCGGG
1 CTTAGCCCGGAAT-TAGT-AC-TCGCACAAATGCCTTCGGG
26708382 ACTTAGCCCGGA
1 -CTTAGCCCGGA
26708394 CATCATTCAA
Statistics
Matches: 76, Mismatches: 8, Indels: 12
0.79 0.08 0.12
Matches are distributed among these distances:
38 1 0.01
39 36 0.47
40 30 0.39
41 9 0.12
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (38 bp):
CTTAGCCCGGAATTAGTACTCGCACAAATGCCTTCGGG
Found at i:26720564 original size:28 final size:28
Alignment explanation
Indices: 26720498--26720625 Score: 175
Period size: 28 Copynumber: 4.5 Consensus size: 28
26720488 CATGAGATTG
* * **
26720498 GCACTAAGTGTGCGGGTTTAAATTGCATA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
*
26720527 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
26720555 GCACTAAGTGTGCGAGTTTGATTATGTAA
1 GCACTAAGTGTGCGAGTTTGATTATAT-A
26720584 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
26720612 ACACTAAGTGTGCG
1 GCACTAAGTGTGCG
26720626 GACTTACTAT
Statistics
Matches: 89, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
28 45 0.51
29 44 0.49
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:26720587 original size:57 final size:57
Alignment explanation
Indices: 26720498--26720625 Score: 186
Period size: 57 Copynumber: 2.2 Consensus size: 57
26720488 CATGAGATTG
*
26720498 GCACTAAGTGTGCGGGTTTAAATTGCATAGCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTAAATTGCATAGCACTAAGTGTGCAAGTTTGATTATATA
* * * *
26720555 GCACTAAGTGTGCGAGTTTGATTATGTA-AGCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTAAAT-TGCATAGCACTAAGTGTGCAAGTTTGATTATATA
*
26720612 ACACTAAGTGTGCG
1 GCACTAAGTGTGCG
26720626 GACTTACTAT
Statistics
Matches: 64, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
57 61 0.95
58 3 0.05
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (57 bp):
GCACTAAGTGTGCGAGTTTAAATTGCATAGCACTAAGTGTGCAAGTTTGATTATATA
Found at i:26732686 original size:20 final size:20
Alignment explanation
Indices: 26732658--26732702 Score: 81
Period size: 20 Copynumber: 2.2 Consensus size: 20
26732648 GCTGTCCAAA
*
26732658 TTAGGACAAATTTATGGTAC
1 TTAGCACAAATTTATGGTAC
26732678 TTAGCACAAATTTATGGTAC
1 TTAGCACAAATTTATGGTAC
26732698 TTAGC
1 TTAGC
26732703 TAATTAATAT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.33, C:0.13, G:0.18, T:0.36
Consensus pattern (20 bp):
TTAGCACAAATTTATGGTAC
Found at i:26734221 original size:49 final size:49
Alignment explanation
Indices: 26734147--26734423 Score: 309
Period size: 47 Copynumber: 5.6 Consensus size: 49
26734137 TATTTGAATA
26734147 AATGTGAAA--GTATATATATGTGATAAGGCCTAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATG
* *
26734194 AATGTAAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATG
26734243 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCAATGTGATAGG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGAT--G
* * *
26734292 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 --AATGTGA--AA-GT----GTATATATATGTGATAAGGCCTAATGGCCAATGTGATG
* * * *
26734350 AATGTGAAAGTG--TATATATGTGATAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATG
*
26734397 GATGTGAAAGTGTATA-A-ATGTGATAAG
1 AATGTGAAAGTGTATATATATGTGATAAG
26734424 TTTCGAAGGG
Statistics
Matches: 199, Mismatches: 14, Indels: 34
0.81 0.06 0.14
Matches are distributed among these distances:
47 91 0.46
48 1 0.01
49 52 0.26
51 6 0.03
53 4 0.02
54 4 0.02
56 6 0.03
58 2 0.01
60 33 0.17
ACGTcount: A:0.34, C:0.08, G:0.29, T:0.29
Consensus pattern (49 bp):
AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATG
Found at i:26734301 original size:60 final size:60
Alignment explanation
Indices: 26734230--26734348 Score: 229
Period size: 60 Copynumber: 2.0 Consensus size: 60
26734220 AAGGCCTAAT
26734230 GGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATA
1 GGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATA
*
26734290 GGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
1 GGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGAT
26734349 GAATGTGAAA
Statistics
Matches: 58, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
60 58 1.00
ACGTcount: A:0.30, C:0.10, G:0.31, T:0.29
Consensus pattern (60 bp):
GGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATA
Found at i:26734326 original size:25 final size:25
Alignment explanation
Indices: 26734295--26734373 Score: 65
Period size: 25 Copynumber: 3.3 Consensus size: 25
26734285 TGATAGGCCG
26734295 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
* *** ****
26734320 ATGTGAT-AAGGCCTAA-TG-GCCG
1 ATGTGATGAATGTGAAAGTGTATAT
26734342 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
26734367 ATGTGAT
1 ATGTGAT
26734374 AGGGCCGAGT
Statistics
Matches: 35, Mismatches: 16, Indels: 6
0.61 0.28 0.11
Matches are distributed among these distances:
22 7 0.20
23 7 0.20
24 7 0.20
25 14 0.40
ACGTcount: A:0.33, C:0.05, G:0.29, T:0.33
Consensus pattern (25 bp):
ATGTGATGAATGTGAAAGTGTATAT
Found at i:26734341 original size:107 final size:108
Alignment explanation
Indices: 26734181--26734395 Score: 360
Period size: 107 Copynumber: 2.0 Consensus size: 108
26734171 AAGGCCTAAT
26734181 GGCCAATGTGATGAATGTAAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GGCCAATGTGATGAATGTAAAAGTG-ATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
* *
26734246 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATA
65 GTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAACGTGATA
* *
26734290 GGCCGATGTGATGAATGTGAAAGTG-TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
1 GGCCAATGTGATGAATGTAAAAGTGATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
* *
26734354 TGAAAGTGTATATATGTGATAGGGCCGAGTGGCCAACGTGAT
66 TGAAAGTGTATATATGTGATAAGGCCGAATGGCCAACGTGAT
26734396 GGATGTGAAA
Statistics
Matches: 100, Mismatches: 6, Indels: 2
0.93 0.06 0.02
Matches are distributed among these distances:
107 77 0.77
109 23 0.23
ACGTcount: A:0.32, C:0.10, G:0.30, T:0.28
Consensus pattern (108 bp):
GGCCAATGTGATGAATGTAAAAGTGATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
TGAAAGTGTATATATGTGATAAGGCCGAATGGCCAACGTGATA
Found at i:26737737 original size:15 final size:15
Alignment explanation
Indices: 26737717--26737746 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
26737707 ACCATTACTT
*
26737717 GACCATTTCAACATC
1 GACCATTTAAACATC
26737732 GACCATTTAAACATC
1 GACCATTTAAACATC
26737747 AAAATACAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.37, C:0.30, G:0.07, T:0.27
Consensus pattern (15 bp):
GACCATTTAAACATC
Found at i:26738862 original size:15 final size:16
Alignment explanation
Indices: 26738834--26738863 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
26738824 CAATTCAATC
26738834 CAAAATTCATACTTTA
1 CAAAATTCATACTTTA
26738850 CAAAATT-ATACTTT
1 CAAAATTCATACTTT
26738864 TTCCCCTATT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.43, C:0.17, G:0.00, T:0.40
Consensus pattern (16 bp):
CAAAATTCATACTTTA
Found at i:26749146 original size:21 final size:22
Alignment explanation
Indices: 26749120--26749160 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
26749110 CTTTTAACAC
*
26749120 AGGGGC-ACACGCCTGTGTGGG
1 AGGGGCAACACGCCCGTGTGGG
26749141 AGGGGCAACACGCCCGTGTG
1 AGGGGCAACACGCCCGTGTG
26749161 ACATTTCAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 6 0.33
22 12 0.67
ACGTcount: A:0.17, C:0.27, G:0.44, T:0.12
Consensus pattern (22 bp):
AGGGGCAACACGCCCGTGTGGG
Found at i:26751211 original size:40 final size:40
Alignment explanation
Indices: 26751127--26751391 Score: 290
Period size: 40 Copynumber: 6.7 Consensus size: 40
26751117 TTGAATGCTG
* * * *
26751127 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAA
** *
26751167 TCCGGACTAAGAT-CCGAAGGCATTTGTGTGAGATAC-AAA
1 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAA
*
26751206 TTCCGGGTTAAGCCCCGAAGGCATTTGTGCGAGATAC-AAA
1 -TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAAA
** *
26751246 TTCCGGGTTAAACCCCGAAGGCCTTTGTGCGAGATACTAAA
1 -TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAAA
*
26751287 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGATACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAAA
* *
26751327 TCCGGGTTAAGTCCCGAAGGCA-TTGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAAA
* * *
26751366 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTG
26751392 AACGAGGAGC
Statistics
Matches: 197, Mismatches: 21, Indels: 14
0.85 0.09 0.06
Matches are distributed among these distances:
39 35 0.18
40 149 0.76
41 12 0.06
42 1 0.01
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAAA
Found at i:26751409 original size:79 final size:80
Alignment explanation
Indices: 26751180--26751424 Score: 232
Period size: 80 Copynumber: 3.1 Consensus size: 80
26751170 GGACTAAGAT
* * * * * **
26751180 CCGAAGG-CATTTGTGTGAGATAC-AAATTCCGGGTTAAGCCCCGAAGGCATTTGTGCGAGATAC
1 CCGAAGGCCA-TTGTGCGAGATACTAAA-ACCGGGCTAAGTCCCGAAGGCATTCGAACGAGATAC
*
26751243 -AAATTCCGGGTTAAACC
64 TAAA-TCCGGGTTAAATC
* * * **
26751260 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGATACTA
1 CCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGATACTA
*
26751325 AATCCGGGTTAAGTC
66 AATCCGGGTTAAATC
* * * * *
26751340 CCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTTGAACGAGGA-GCT
1 CCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGA-GATACT
*
26751403 ATATCC-GGTTAAATC
65 AAATCCGGGTTAAATC
26751418 CCGAAGG
1 CCGAAGG
26751425 TACGTGATTT
Statistics
Matches: 143, Mismatches: 18, Indels: 10
0.84 0.11 0.06
Matches are distributed among these distances:
78 15 0.10
79 48 0.34
80 73 0.51
81 7 0.05
ACGTcount: A:0.28, C:0.22, G:0.27, T:0.23
Consensus pattern (80 bp):
CCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGATACTA
AATCCGGGTTAAATC
Found at i:26755004 original size:27 final size:27
Alignment explanation
Indices: 26754974--26755079 Score: 115
Period size: 27 Copynumber: 3.9 Consensus size: 27
26754964 GACTACCCTA
*
26754974 TGTTTAACATCCCGTCGGACTATACC-G
1 TGTTTAACGTCCCGTCGGACTAT-CCGG
* *
26755001 TGTTTAACGTTCCTTCGGACTATCCGG
1 TGTTTAACGTCCCGTCGGACTATCCGG
* * * *
26755028 TGTTTAATGTCCCATTGGACTATCCTG
1 TGTTTAACGTCCCGTCGGACTATCCGG
* *
26755055 TGATTAACGTCTCGTCGGACTATCC
1 TGTTTAACGTCCCGTCGGACTATCC
26755080 TATGGTTATC
Statistics
Matches: 65, Mismatches: 13, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
26 2 0.03
27 63 0.97
ACGTcount: A:0.19, C:0.26, G:0.20, T:0.35
Consensus pattern (27 bp):
TGTTTAACGTCCCGTCGGACTATCCGG
Found at i:26755080 original size:27 final size:27
Alignment explanation
Indices: 26754964--26755098 Score: 103
Period size: 27 Copynumber: 5.0 Consensus size: 27
26754954 CGTCTTGGCA
* * * *
26754964 GACTACCCTATGTTTAACATCCCGTCG
1 GACTATCCTGTGTTTAACGTCTCGTCG
*
26754991 GACTATACC-GTGTTTAACGT-TCCTTCG
1 GACTAT-CCTGTGTTTAACGTCT-CGTCG
* * * * *
26755018 GACTATCCGGTGTTTAATGTCCCATTG
1 GACTATCCTGTGTTTAACGTCTCGTCG
*
26755045 GACTATCCTGTGATTAACGTCTCGTCG
1 GACTATCCTGTGTTTAACGTCTCGTCG
* * * *
26755072 GACTATCCTATGGTTATCTTCTCGTCG
1 GACTATCCTGTGTTTAACGTCTCGTCG
26755099 AATTATCTAT
Statistics
Matches: 85, Mismatches: 19, Indels: 8
0.76 0.17 0.07
Matches are distributed among these distances:
26 2 0.02
27 81 0.95
28 2 0.02
ACGTcount: A:0.19, C:0.27, G:0.19, T:0.36
Consensus pattern (27 bp):
GACTATCCTGTGTTTAACGTCTCGTCG
Found at i:26755111 original size:20 final size:20
Alignment explanation
Indices: 26755086--26755128 Score: 68
Period size: 20 Copynumber: 2.1 Consensus size: 20
26755076 ATCCTATGGT
* *
26755086 TATCTTCTCGTCGAATTATC
1 TATCTTCTAGTCGAACTATC
26755106 TATCTTCTAGTCGAACTATC
1 TATCTTCTAGTCGAACTATC
26755126 TAT
1 TAT
26755129 GATGTCATAG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.23, C:0.23, G:0.09, T:0.44
Consensus pattern (20 bp):
TATCTTCTAGTCGAACTATC
Found at i:26756960 original size:40 final size:40
Alignment explanation
Indices: 26756916--26757014 Score: 171
Period size: 40 Copynumber: 2.5 Consensus size: 40
26756906 AATCACAGGC
* *
26756916 CTGCTCACACAAGCTGTCAGTCAAGACGTAGCTACATGGG
1 CTGCTCACACAAGCTGTCAGTCAAAACATAGCTACATGGG
26756956 CTGCTCACACAAGCTGTCAGTCAAAACATAGCTACATGGG
1 CTGCTCACACAAGCTGTCAGTCAAAACATAGCTACATGGG
*
26756996 CTGCTCACACAACCTGTCA
1 CTGCTCACACAAGCTGTCA
26757015 AGTATCCGCA
Statistics
Matches: 56, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 56 1.00
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.20
Consensus pattern (40 bp):
CTGCTCACACAAGCTGTCAGTCAAAACATAGCTACATGGG
Found at i:26760017 original size:6 final size:6
Alignment explanation
Indices: 26759997--26760037 Score: 55
Period size: 6 Copynumber: 6.7 Consensus size: 6
26759987 ACGCTTTTTC
* *
26759997 TCCCCTT TCCCCT TCCTCT TCCTCT TCCCCT TCCCCT TCCC
1 TCCCC-T TCCCCT TCCCCT TCCCCT TCCCCT TCCCCT TCCC
26760038 TTTAGGTTGC
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
6 27 0.84
7 5 0.16
ACGTcount: A:0.00, C:0.61, G:0.00, T:0.39
Consensus pattern (6 bp):
TCCCCT
Found at i:26760143 original size:25 final size:25
Alignment explanation
Indices: 26760115--26760164 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
26760105 CAGGTAAGGC
*
26760115 TCCTTCACCTTCTTTCGTTCTTCAT
1 TCCTTCACCTGCTTTCGTTCTTCAT
** *
26760140 TCCTTTTCCTGCTTTTGTTCTTCAT
1 TCCTTCACCTGCTTTCGTTCTTCAT
26760165 CTTCACTTCC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.06, C:0.32, G:0.06, T:0.56
Consensus pattern (25 bp):
TCCTTCACCTGCTTTCGTTCTTCAT
Found at i:26762957 original size:41 final size:41
Alignment explanation
Indices: 26762786--26762945 Score: 168
Period size: 41 Copynumber: 3.9 Consensus size: 41
26762776 GGGTCTAAAT
26762786 CCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGCTAATAA
1 CCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGCTAATAA
* * * * *
26762827 CCGAACTTAGTTTCGAAGGGCTTTAGAGCCAGTG-TCATAA
1 CCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGCTAATAA
* * *
26762867 CCG-GACTTAGT-TCCGAAGGGCCTTCGAGCCAGTGGTCTAAT--
1 CCGAG-CTTGGTCT-CGAAGGGCTTTTGAGCCAGT-G-CTAATAA
*
26762908 CCGAGCTTGGTCTCAAAGGGCTTTTGAGCCAGTGCTAA
1 CCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGCTAA
26762946 GAATCGGGCT
Statistics
Matches: 99, Mismatches: 13, Indels: 16
0.77 0.10 0.12
Matches are distributed among these distances:
39 5 0.05
40 33 0.33
41 56 0.57
42 2 0.02
43 3 0.03
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (41 bp):
CCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGCTAATAA
Found at i:26763490 original size:13 final size:13
Alignment explanation
Indices: 26763472--26763497 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
26763462 CGAAATGCTT
26763472 ATTCTCTGTTTTA
1 ATTCTCTGTTTTA
26763485 ATTCTCTGTTTTA
1 ATTCTCTGTTTTA
26763498 TAGATTTTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.15, G:0.08, T:0.62
Consensus pattern (13 bp):
ATTCTCTGTTTTA
Found at i:26770440 original size:41 final size:41
Alignment explanation
Indices: 26770269--26770428 Score: 168
Period size: 41 Copynumber: 3.9 Consensus size: 41
26770259 GGGTCTAAAT
*
26770269 CCGAGCTTGGTCTCGAAGGGATTTTGAGCCAGTGCTAATAA
1 CCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGCTAATAA
* * * * *
26770310 CCGAACTTAGTTTCGAAGGGCTTTAGAGCCAGTG-TCATAA
1 CCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGCTAATAA
* * *
26770350 CCG-GACTTAGT-TCCGAAGGGCCTTCGAGCCAGTGGTCTAAT--
1 CCGAG-CTTGGTCT-CGAAGGGCTTTTGAGCCAGT-G-CTAATAA
26770391 CCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGCTAA
1 CCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGCTAA
26770429 GAATCGGGCT
Statistics
Matches: 99, Mismatches: 13, Indels: 16
0.77 0.10 0.12
Matches are distributed among these distances:
39 5 0.05
40 33 0.33
41 56 0.57
42 2 0.02
43 3 0.03
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.26
Consensus pattern (41 bp):
CCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGCTAATAA
Found at i:26770973 original size:13 final size:13
Alignment explanation
Indices: 26770955--26770980 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
26770945 CGAAATGCTT
26770955 ATTCTCTGTTTTA
1 ATTCTCTGTTTTA
26770968 ATTCTCTGTTTTA
1 ATTCTCTGTTTTA
26770981 TAGATTTTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.15, G:0.08, T:0.62
Consensus pattern (13 bp):
ATTCTCTGTTTTA
Found at i:26773003 original size:18 final size:18
Alignment explanation
Indices: 26772980--26773015 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
26772970 CGATTAAACC
26772980 ATTTGATTGATATATTTA
1 ATTTGATTGATATATTTA
*
26772998 ATTTGATTTATATATTTA
1 ATTTGATTGATATATTTA
26773016 TAAATAAATC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.33, C:0.00, G:0.08, T:0.58
Consensus pattern (18 bp):
ATTTGATTGATATATTTA
Found at i:26773075 original size:18 final size:18
Alignment explanation
Indices: 26773054--26773096 Score: 77
Period size: 18 Copynumber: 2.4 Consensus size: 18
26773044 ACAATTTAAA
26773054 ATATAAATTTATTAATAT
1 ATATAAATTTATTAATAT
26773072 ATATAAATTTATTAATAT
1 ATATAAATTTATTAATAT
*
26773090 ATGTAAA
1 ATATAAA
26773097 AACAGCTTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (18 bp):
ATATAAATTTATTAATAT
Found at i:26774225 original size:26 final size:26
Alignment explanation
Indices: 26774189--26774298 Score: 177
Period size: 26 Copynumber: 4.2 Consensus size: 26
26774179 TGATACAAAT
26774189 TGATAATAGGTTAGGTAAATG-TTCAA
1 TGATAATAGGTTAGGTAAATGTTTC-A
*
26774215 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
26774241 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
26774267 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
26774293 TGATAA
1 TGATAA
26774299 GAATTTCATG
Statistics
Matches: 80, Mismatches: 3, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
26 78 0.98
27 2 0.03
ACGTcount: A:0.35, C:0.05, G:0.25, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTTCA
Found at i:26775951 original size:27 final size:27
Alignment explanation
Indices: 26775910--26776030 Score: 170
Period size: 27 Copynumber: 4.4 Consensus size: 27
26775900 GAGGAAGCGT
*
26775910 TCTGGTGGCTATGCCACAAATATCTGA
1 TCTGGTGGCTCTGCCACAAATATCTGA
*
26775937 TCTGGTGGCTTTGCCACAAATATCTGA
1 TCTGGTGGCTCTGCCACAAATATCTGA
* * *
26775964 TCTAGTGGCTCTGCCACATATATCTGT
1 TCTGGTGGCTCTGCCACAAATATCTGA
*
26775991 TCTGGTGGCTCTGCCACAATTATCTGTA
1 TCTGGTGGCTCTGCCACAAATATCTG-A
*
26776019 TCTGGTGACTCT
1 TCTGGTGGCTCT
26776031 ATCACATTAT
Statistics
Matches: 83, Mismatches: 10, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
27 72 0.87
28 11 0.13
ACGTcount: A:0.20, C:0.24, G:0.21, T:0.35
Consensus pattern (27 bp):
TCTGGTGGCTCTGCCACAAATATCTGA
Found at i:26775996 original size:54 final size:55
Alignment explanation
Indices: 26775914--26776049 Score: 177
Period size: 54 Copynumber: 2.5 Consensus size: 55
26775904 AAGCGTTCTG
* * * *
26775914 GTGGCTATGCCACAAATATCTGATCTGGTGGCTTTGCCACAAATATCTG-ATCTA
1 GTGGCTCTGCCACATATATCTGTTCTGGTGGCTCTGCCACAAATATCTGTATCTA
* *
26775968 GTGGCTCTGCCACATATATCTGTTCTGGTGGCTCTGCCACAATTATCTGTATCTG
1 GTGGCTCTGCCACATATATCTGTTCTGGTGGCTCTGCCACAAATATCTGTATCTA
* **
26776023 GTGACTCTATCACAT-TATCTGTTCTGG
1 GTGGCTCTGCCACATATATCTGTTCTGG
26776050 CAGCCATGCT
Statistics
Matches: 72, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
54 56 0.78
55 16 0.22
ACGTcount: A:0.21, C:0.24, G:0.21, T:0.35
Consensus pattern (55 bp):
GTGGCTCTGCCACATATATCTGTTCTGGTGGCTCTGCCACAAATATCTGTATCTA
Found at i:26776039 original size:27 final size:26
Alignment explanation
Indices: 26775930--26776049 Score: 96
Period size: 27 Copynumber: 4.5 Consensus size: 26
26775920 ATGCCACAAA
* * * * *
26775930 TATCTGATCTGGTGGCTTTGCCACAAA
1 TATCTGTTCTGGTGACTCTACCAC-AT
* * * *
26775957 TATCTGATCTAGTGGCTCTGCCACAT
1 TATCTGTTCTGGTGACTCTACCACAT
* *
26775983 ATATCTGTTCTGGTGGCTCTGCCACAAT
1 -TATCTGTTCTGGTGACTCTACCAC-AT
*
26776011 TATCTGTATCTGGTGACTCTATCACAT
1 TATCTGT-TCTGGTGACTCTACCACAT
26776038 TATCTGTTCTGG
1 TATCTGTTCTGG
26776050 CAGCCATGCT
Statistics
Matches: 82, Mismatches: 8, Indels: 7
0.85 0.08 0.07
Matches are distributed among these distances:
26 6 0.07
27 60 0.73
28 16 0.20
ACGTcount: A:0.19, C:0.23, G:0.20, T:0.38
Consensus pattern (26 bp):
TATCTGTTCTGGTGACTCTACCACAT
Found at i:26777525 original size:18 final size:18
Alignment explanation
Indices: 26777504--26777569 Score: 60
Period size: 18 Copynumber: 3.3 Consensus size: 18
26777494 TTGATTGACA
26777504 TATTTAATTTGATTTATT
1 TATTTAATTTGATTTATT
*
26777522 TATTTATAATTGAGTATTATTAT
1 TATTTA-ATTTGA-T-TTA-T-T
*
26777545 ATATTTAATTTGAATTATT
1 -TATTTAATTTGATTTATT
26777564 TATTTA
1 TATTTA
26777570 TAAATAAATC
Statistics
Matches: 39, Mismatches: 3, Indels: 12
0.72 0.06 0.22
Matches are distributed among these distances:
18 12 0.31
19 6 0.15
20 2 0.05
21 6 0.15
22 1 0.03
23 6 0.15
24 6 0.15
ACGTcount: A:0.33, C:0.00, G:0.06, T:0.61
Consensus pattern (18 bp):
TATTTAATTTGATTTATT
Found at i:26780438 original size:6 final size:6
Alignment explanation
Indices: 26780420--26780544 Score: 71
Period size: 6 Copynumber: 20.3 Consensus size: 6
26780410 AAGAAACATT
* *
26780420 ATCAGA A-CTAGA ATCAGA ATTAGA ATCAGA ATCAGA ATCAG- GTGACAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA
* * * * *
26780469 A-CTAGA ATCAGA ATCAGA ATTAG- GTGACAGA ATTAGA ATCAGA ATTAGT
1 ATC-AGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA ATCAGA ATCAGA
*
26780518 ATCAGGTA A-CAGA ATCAAA ATCAGA AT
1 ATCA-G-A ATCAGA ATCAGA ATCAGA AT
26780545 GTGAATGCAA
Statistics
Matches: 90, Mismatches: 16, Indels: 26
0.68 0.12 0.20
Matches are distributed among these distances:
5 6 0.07
6 72 0.80
7 10 0.11
8 2 0.02
ACGTcount: A:0.47, C:0.13, G:0.19, T:0.21
Consensus pattern (6 bp):
ATCAGA
Found at i:26780475 original size:31 final size:31
Alignment explanation
Indices: 26780434--26780544 Score: 159
Period size: 31 Copynumber: 3.6 Consensus size: 31
26780424 GAACTAGAAT
26780434 CAGAATTAGAATCAGAATCAGAATCAGGTGA
1 CAGAATTAGAATCAGAATCAGAATCAGGTGA
* *
26780465 CAGAACTAGAATCAGAATCAGAATTAGGTGA
1 CAGAATTAGAATCAGAATCAGAATCAGGTGA
* * *
26780496 CAGAATTAGAATCAGAATTAGTATCAGGTAA
1 CAGAATTAGAATCAGAATCAGAATCAGGTGA
* *
26780527 CAGAATCAAAATCAGAAT
1 CAGAATTAGAATCAGAAT
26780545 GTGAATGCAA
Statistics
Matches: 71, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 71 1.00
ACGTcount: A:0.47, C:0.13, G:0.20, T:0.21
Consensus pattern (31 bp):
CAGAATTAGAATCAGAATCAGAATCAGGTGA
Found at i:26781061 original size:27 final size:26
Alignment explanation
Indices: 26781031--26781118 Score: 140
Period size: 27 Copynumber: 3.3 Consensus size: 26
26781021 AACACCCTAG
26781031 GGGTAAAATGGTAATTTTATAAATCGA
1 GGGTAAAATGGTAATTTT-TAAATCGA
26781058 GGGTAAAATGGTAATTTTGTAAATCGA
1 GGGTAAAATGGTAATTTT-TAAATCGA
* *
26781085 GGGTAAAATAGTAATTTTTAAATTGA
1 GGGTAAAATGGTAATTTTTAAATCGA
26781111 GGGTAAAA
1 GGGTAAAA
26781119 CAGTAATGTA
Statistics
Matches: 58, Mismatches: 3, Indels: 1
0.94 0.05 0.02
Matches are distributed among these distances:
26 15 0.26
27 43 0.74
ACGTcount: A:0.41, C:0.02, G:0.24, T:0.33
Consensus pattern (26 bp):
GGGTAAAATGGTAATTTTTAAATCGA
Found at i:26781914 original size:27 final size:27
Alignment explanation
Indices: 26781857--26781922 Score: 87
Period size: 27 Copynumber: 2.4 Consensus size: 27
26781847 CTCATATCTG
* * * *
26781857 TAGGCTAGCATTACTGAAATACCCTTG
1 TAGGGTAGAATTACTGAAATACCCCTA
*
26781884 TAGGGTAGAATTACTGAAATGCCCCTA
1 TAGGGTAGAATTACTGAAATACCCCTA
26781911 TAGGGTAGAATT
1 TAGGGTAGAATT
26781923 TCCAAAATAC
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.32, C:0.17, G:0.23, T:0.29
Consensus pattern (27 bp):
TAGGGTAGAATTACTGAAATACCCCTA
Found at i:26781949 original size:27 final size:27
Alignment explanation
Indices: 26781919--26782004 Score: 102
Period size: 27 Copynumber: 3.2 Consensus size: 27
26781909 TATAGGGTAG
* * **
26781919 AATTTCCAAAATACCCTTGGTTTATAA
1 AATTACCAAAATACCCCTAATTTATAA
*
26781946 AATTACCAAAATACCCCTAATTTGTAA
1 AATTACCAAAATACCCCTAATTTATAA
* *
26781973 AATTACCAAAATACCTC-AATTTACAA
1 AATTACCAAAATACCCCTAATTTATAA
26781999 AATTAC
1 AATTAC
26782005 TATTTTACCC
Statistics
Matches: 51, Mismatches: 8, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
26 13 0.25
27 38 0.75
ACGTcount: A:0.44, C:0.21, G:0.03, T:0.31
Consensus pattern (27 bp):
AATTACCAAAATACCCCTAATTTATAA
Found at i:26782024 original size:27 final size:27
Alignment explanation
Indices: 26781986--26782230 Score: 303
Period size: 27 Copynumber: 9.1 Consensus size: 27
26781976 TACCAAAATA
*
26781986 CCTCAATTTACAAAATTACTATTTTAC
1 CCTCGATTTACAAAATTACTATTTTAC
* *
26782013 CCTCGATTTACAGAATTACTGTTTTAC
1 CCTCGATTTACAAAATTACTATTTTAC
*
26782040 CCTCGATTTACAAAATTACTGTTTTAC
1 CCTCGATTTACAAAATTACTATTTTAC
* * *
26782067 CCTCAATTTACAGAATTA-TCGTTTTAC
1 CCTCGATTTACAAAATTACT-ATTTTAC
* *
26782094 CCTCGATTAATAAAATTACTATTTTAC
1 CCTCGATTTACAAAATTACTATTTTAC
26782121 CCTCGATTTACAAAATTACTATTTTAC
1 CCTCGATTTACAAAATTACTATTTTAC
* * * *
26782148 CCTTGATTTAAAAAATTATTGTTTTAC
1 CCTCGATTTACAAAATTACTATTTTAC
* * * *
26782175 CCTCAATTTACAGAATTACCATTTCAC
1 CCTCGATTTACAAAATTACTATTTTAC
* *
26782202 CCTCGATTTATAAAATTACCATTTTAC
1 CCTCGATTTACAAAATTACTATTTTAC
26782229 CC
1 CC
26782231 CTAGGGTGTT
Statistics
Matches: 187, Mismatches: 29, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
26 1 0.01
27 185 0.99
28 1 0.01
ACGTcount: A:0.32, C:0.22, G:0.05, T:0.40
Consensus pattern (27 bp):
CCTCGATTTACAAAATTACTATTTTAC
Found at i:26782754 original size:6 final size:6
Alignment explanation
Indices: 26782737--26782839 Score: 86
Period size: 6 Copynumber: 16.8 Consensus size: 6
26782727 ACTCTGTTAC
* * * *
26782737 CTGATA CTGATT CTGATT CTAATT CTG-TCAC CTAATT CTGATT CTGATT
1 CTGATT CTGATT CTGATT CTGATT CTGAT--T CTGATT CTGATT CTGATT
* *
26782786 CTGATT CTG-TCAC CTGATT CTGATT CTGATT CTAATT CTGATT CT-AGTT
1 CTGATT CTGAT--T CTGATT CTGATT CTGATT CTGATT CTGATT CTGA-TT
26782835 CTGAT
1 CTGAT
26782840 AATGTTTCTT
Statistics
Matches: 78, Mismatches: 11, Indels: 16
0.74 0.10 0.15
Matches are distributed among these distances:
5 3 0.04
6 67 0.86
7 6 0.08
8 2 0.03
ACGTcount: A:0.20, C:0.20, G:0.14, T:0.46
Consensus pattern (6 bp):
CTGATT
Found at i:26782764 original size:31 final size:31
Alignment explanation
Indices: 26782729--26782825 Score: 158
Period size: 31 Copynumber: 3.1 Consensus size: 31
26782719 TGATTTTGAC
* *
26782729 TCTGTTACCTGATACTGATTCTGATTCTAAT
1 TCTGTCACCTGATTCTGATTCTGATTCTAAT
* *
26782760 TCTGTCACCTAATTCTGATTCTGATTCTGAT
1 TCTGTCACCTGATTCTGATTCTGATTCTAAT
26782791 TCTGTCACCTGATTCTGATTCTGATTCTAAT
1 TCTGTCACCTGATTCTGATTCTGATTCTAAT
26782822 TCTG
1 TCTG
26782826 ATTCTAGTTC
Statistics
Matches: 60, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 60 1.00
ACGTcount: A:0.20, C:0.22, G:0.13, T:0.45
Consensus pattern (31 bp):
TCTGTCACCTGATTCTGATTCTGATTCTAAT
Found at i:26784697 original size:27 final size:26
Alignment explanation
Indices: 26784638--26784719 Score: 92
Period size: 27 Copynumber: 3.1 Consensus size: 26
26784628 AATCTCATAT
* * *
26784638 CTGTAGGCTAGCATTATTGAAATACC
1 CTGTAGGGTAGAATTACTGAAATACC
*
26784664 CTCGTAGGGTAGAATTACTGAAATGCCC
1 CT-GTAGGGTAGAATTACTGAAAT-ACC
**
26784692 CTGTAGGGTAGAATTACCAAAATACC
1 CTGTAGGGTAGAATTACTGAAATACC
26784718 CT
1 CT
26784720 TGGTTTATAA
Statistics
Matches: 47, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
26 6 0.13
27 37 0.79
28 4 0.09
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.27
Consensus pattern (26 bp):
CTGTAGGGTAGAATTACTGAAATACC
Found at i:26784733 original size:27 final size:27
Alignment explanation
Indices: 26784703--26784797 Score: 147
Period size: 27 Copynumber: 3.6 Consensus size: 27
26784693 TGTAGGGTAG
*
26784703 AATTACCAAAATACCCTTGGTTTATAA
1 AATTACCAAAATACCCTTAGTTTATAA
*
26784730 AATTACCAAAATACCC-TAGTTTGTAA
1 AATTACCAAAATACCCTTAGTTTATAA
* *
26784756 AATTACCAAAATACCCCTAGTTTTTAA
1 AATTACCAAAATACCCTTAGTTTATAA
26784783 AATTACCAAAATACC
1 AATTACCAAAATACC
26784798 TCGATTTACA
Statistics
Matches: 64, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
26 24 0.38
27 40 0.62
ACGTcount: A:0.43, C:0.21, G:0.05, T:0.31
Consensus pattern (27 bp):
AATTACCAAAATACCCTTAGTTTATAA
Found at i:26784758 original size:26 final size:26
Alignment explanation
Indices: 26784703--26784814 Score: 145
Period size: 27 Copynumber: 4.2 Consensus size: 26
26784693 TGTAGGGTAG
*
26784703 AATTACCAAAATACCCTTGGTTTATAA
1 AATTACCAAAATACCC-TAGTTTATAA
*
26784730 AATTACCAAAATACCCTAGTTTGTAA
1 AATTACCAAAATACCCTAGTTTATAA
*
26784756 AATTACCAAAATACCCCTAGTTTTTAA
1 AATTACCAAAATA-CCCTAGTTTATAA
* *
26784783 AATTACCAAAATA-CCTCGATTTACAA
1 AATTACCAAAATACCCTAG-TTTATAA
26784809 AATTAC
1 AATTAC
26784815 TATTTTACCC
Statistics
Matches: 77, Mismatches: 6, Indels: 5
0.88 0.07 0.06
Matches are distributed among these distances:
25 4 0.05
26 32 0.42
27 41 0.53
ACGTcount: A:0.43, C:0.21, G:0.05, T:0.31
Consensus pattern (26 bp):
AATTACCAAAATACCCTAGTTTATAA
Found at i:26784811 original size:53 final size:53
Alignment explanation
Indices: 26784703--26784814 Score: 154
Period size: 53 Copynumber: 2.1 Consensus size: 53
26784693 TGTAGGGTAG
* * * **
26784703 AATTACCAAAATACCCTTGGTTTATAAAATTACCAAAATACCCTAGTTTGTAA
1 AATTACCAAAATACCCCTAGTTTATAAAATTACCAAAATACCCGAGTTTACAA
*
26784756 AATTACCAAAATACCCCTAGTTTTTAAAATTACCAAAATACCTCGA-TTTACAA
1 AATTACCAAAATACCCCTAGTTTATAAAATTACCAAAATACC-CGAGTTTACAA
26784809 AATTAC
1 AATTAC
26784815 TATTTTACCC
Statistics
Matches: 52, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
53 50 0.96
54 2 0.04
ACGTcount: A:0.43, C:0.21, G:0.05, T:0.31
Consensus pattern (53 bp):
AATTACCAAAATACCCCTAGTTTATAAAATTACCAAAATACCCGAGTTTACAA
Found at i:26784824 original size:53 final size:53
Alignment explanation
Indices: 26784722--26784876 Score: 127
Period size: 53 Copynumber: 2.9 Consensus size: 53
26784712 AATACCCTTG
* * * * ***
26784722 GTTTATAAAATTACCAAAATACC-CTAGTTTGTAAAATTACCAAAATACCCCTA
1 GTTTTTAAAATTACCAAAATACCTCGA-TTTGCAAAATTACTATTTTACCCCTA
* *
26784775 GTTTTTAAAATTACCAAAATACCTCGATTTACAAAATTACTATTTTA-CCCTC
1 GTTTTTAAAATTACCAAAATACCTCGATTTGCAAAATTACTATTTTACCCCTA
* ****
26784827 G-ATTTACAGAATTACCGTTTTACCCTCGATTTGCAAAATTACTATTTTAC
1 GTTTTTA-A-AATTACCAAAATA-CCTCGATTTGCAAAATTACTATTTTAC
26784877 TCTTAATTTA
Statistics
Matches: 82, Mismatches: 15, Indels: 8
0.78 0.14 0.08
Matches are distributed among these distances:
51 4 0.05
52 6 0.07
53 45 0.55
54 27 0.33
ACGTcount: A:0.37, C:0.21, G:0.06, T:0.36
Consensus pattern (53 bp):
GTTTTTAAAATTACCAAAATACCTCGATTTGCAAAATTACTATTTTACCCCTA
Found at i:26784834 original size:27 final size:27
Alignment explanation
Indices: 26784796--26784950 Score: 204
Period size: 27 Copynumber: 5.7 Consensus size: 27
26784786 TACCAAAATA
26784796 CCTCGATTTACAAAATTACTATTTTAC
1 CCTCGATTTACAAAATTACTATTTTAC
* **
26784823 CCTCGATTTACAGAATTACCGTTTTAC
1 CCTCGATTTACAAAATTACTATTTTAC
*
26784850 CCTCGATTTGCAAAATTACTATTTTAC
1 CCTCGATTTACAAAATTACTATTTTAC
* ** * *
26784877 TCTTAATTTACAGAATTA-TCGTTTTAC
1 CCTCGATTTACAAAATTACT-ATTTTAC
*
26784904 CCTCGATTGACAAAATTACTATTTTAC
1 CCTCGATTTACAAAATTACTATTTTAC
26784931 CCTCGATTTACAAAATTACT
1 CCTCGATTTACAAAATTACT
26784951 TGTAACACCC
Statistics
Matches: 106, Mismatches: 20, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
26 1 0.01
27 104 0.98
28 1 0.01
ACGTcount: A:0.31, C:0.22, G:0.07, T:0.40
Consensus pattern (27 bp):
CCTCGATTTACAAAATTACTATTTTAC
Found at i:26784867 original size:54 final size:54
Alignment explanation
Indices: 26784796--26784949 Score: 238
Period size: 54 Copynumber: 2.9 Consensus size: 54
26784786 TACCAAAATA
*
26784796 CCTCGATTTACAAAATTACTATTTTACCCTCGATTTACAGAATTACCGTTTTAC
1 CCTCGATTTGCAAAATTACTATTTTACCCTCGATTTACAGAATTACCGTTTTAC
* ** *
26784850 CCTCGATTTGCAAAATTACTATTTTACTCTTAATTTACAGAATTATCGTTTTAC
1 CCTCGATTTGCAAAATTACTATTTTACCCTCGATTTACAGAATTACCGTTTTAC
*
26784904 CCTCGA-TTGACAAAATTACTATTTTACCCTCGATTTACAAAATTAC
1 CCTCGATTTG-CAAAATTACTATTTTACCCTCGATTTACAGAATTAC
26784950 TTGTAACACC
Statistics
Matches: 89, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
53 3 0.03
54 86 0.97
ACGTcount: A:0.31, C:0.22, G:0.07, T:0.40
Consensus pattern (54 bp):
CCTCGATTTGCAAAATTACTATTTTACCCTCGATTTACAGAATTACCGTTTTAC
Found at i:26785845 original size:27 final size:26
Alignment explanation
Indices: 26785798--26785904 Score: 106
Period size: 27 Copynumber: 4.0 Consensus size: 26
26785788 CATGGCTTCC
* ** *
26785798 AGAACAGATATTGTGATAGAGTCACT
1 AGAACAGATATTTTGGCAGAGCCACT
26785824 AGATACAGATATTTTGGCAGAGCCACT
1 AGA-ACAGATATTTTGGCAGAGCCACT
* *
26785851 AGAACAGATATTTGTGGCATAGCCACC
1 AGAACAGATATTT-TGGCAGAGCCACT
* * *
26785878 AGAATCAGATAATGTGGCAAAGCCACT
1 AGAA-CAGATATTTTGGCAGAGCCACT
26785905 TAACAGAATA
Statistics
Matches: 68, Mismatches: 10, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
26 13 0.19
27 48 0.71
28 7 0.10
ACGTcount: A:0.36, C:0.18, G:0.22, T:0.23
Consensus pattern (26 bp):
AGAACAGATATTTTGGCAGAGCCACT
Found at i:26786065 original size:27 final size:27
Alignment explanation
Indices: 26786025--26786076 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
26786015 GAGTCATCAA
*
26786025 AAATATGTTAGGCAC-ATAGCCATAGGT
1 AAATACGTTAGGCACGA-AGCCATAGGT
*
26786052 AAATACGTTTGGCACGAAGCCATAG
1 AAATACGTTAGGCACGAAGCCATAG
26786077 TCAAGATGGC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
27 21 0.95
28 1 0.05
ACGTcount: A:0.37, C:0.17, G:0.23, T:0.23
Consensus pattern (27 bp):
AAATACGTTAGGCACGAAGCCATAGGT
Found at i:26786631 original size:81 final size:81
Alignment explanation
Indices: 26786466--26786719 Score: 377
Period size: 81 Copynumber: 3.1 Consensus size: 81
26786456 GGAGCAAAAT
* * *
26786466 AGTAATTTTACCCCA-AGAGGGTATCTCGATAATTCTACCCTAGA-GGGTATTTCGATAATTCTA
1 AGTAATTCTACCCTAGAG-GGGTATCTCGATAATTCTACCCTACAGGGGTATTTCGATAATTCTA
* *
26786529 CCTTACAGGGGTATTTT
65 CCTTACAGAGGTATTTC
26786546 AGTAATTCTACCCTAGAGGGGTATCTCGATAATTCTACCCTACAGGGGTATTTCGATAATTCTAC
1 AGTAATTCTACCCTAGAGGGGTATCTCGATAATTCTACCCTACAGGGGTATTTCGATAATTCTAC
26786611 CTTACAGAGGTATTTC
66 CTTACAGAGGTATTTC
* * *
26786627 AGTAATTCTACCCTAGAGGGGTATTTCGATAATTCTACCCTACAGAGGTATTTCAATAATTCTAC
1 AGTAATTCTACCCTAGAGGGGTATCTCGATAATTCTACCCTACAGGGGTATTTCGATAATTCTAC
* **
26786692 CATACAGTTGTATTTC
66 CTTACAGAGGTATTTC
*
26786708 GGTAATTCTACC
1 AGTAATTCTACC
26786720 TTACAGGGTT
Statistics
Matches: 160, Mismatches: 12, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
80 38 0.24
81 122 0.76
ACGTcount: A:0.28, C:0.20, G:0.17, T:0.35
Consensus pattern (81 bp):
AGTAATTCTACCCTAGAGGGGTATCTCGATAATTCTACCCTACAGGGGTATTTCGATAATTCTAC
CTTACAGAGGTATTTC
Found at i:26786697 original size:27 final size:27
Alignment explanation
Indices: 26786484--26786741 Score: 306
Period size: 27 Copynumber: 9.6 Consensus size: 27
26786474 TACCCCAAGA
* *
26786484 GGGTATCTCGATAATTCTACCCTAGA-
1 GGGTATTTCGATAATTCTACCCTACAG
*
26786510 GGGTATTTCGATAATTCTACCTTACAG
1 GGGTATTTCGATAATTCTACCCTACAG
* *
26786537 GGGTATTT-TAGTAATTCTACCCTAGAG
1 GGGTATTTCGA-TAATTCTACCCTACAG
*
26786564 GGGTATCTCGATAATTCTACCCTACAG
1 GGGTATTTCGATAATTCTACCCTACAG
*
26786591 GGGTATTTCGATAATTCTACCTTACAG
1 GGGTATTTCGATAATTCTACCCTACAG
* *
26786618 AGGTATTTC-AGTAATTCTACCCTAGAG
1 GGGTATTTCGA-TAATTCTACCCTACAG
26786645 GGGTATTTCGATAATTCTACCCTACAG
1 GGGTATTTCGATAATTCTACCCTACAG
* * *
26786672 AGGTATTTCAATAATTCTACCATACAG
1 GGGTATTTCGATAATTCTACCCTACAG
** * *
26786699 TTGTATTTCGGTAATTCTACCTTACAG
1 GGGTATTTCGATAATTCTACCCTACAG
* * *
26786726 GGTTGTTTTGATAATT
1 GGGTATTTCGATAATT
26786742 TTGTAAATCG
Statistics
Matches: 197, Mismatches: 30, Indels: 9
0.83 0.13 0.04
Matches are distributed among these distances:
26 25 0.13
27 170 0.86
28 2 0.01
ACGTcount: A:0.27, C:0.19, G:0.18, T:0.36
Consensus pattern (27 bp):
GGGTATTTCGATAATTCTACCCTACAG
Found at i:26786791 original size:27 final size:27
Alignment explanation
Indices: 26786732--26786797 Score: 78
Period size: 27 Copynumber: 2.4 Consensus size: 27
26786722 ACAGGGTTGT
*
26786732 TTTGATAATTTTGTAAATCGAGGGAAA
1 TTTGGTAATTTTGTAAATCGAGGGAAA
** * * *
26786759 AATGGTAATTTTGTAAATCGATGGTAC
1 TTTGGTAATTTTGTAAATCGAGGGAAA
26786786 TTTGGTAATTTT
1 TTTGGTAATTTT
26786798 ACAAGTCAAA
Statistics
Matches: 31, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.32, C:0.05, G:0.21, T:0.42
Consensus pattern (27 bp):
TTTGGTAATTTTGTAAATCGAGGGAAA
Found at i:26786821 original size:54 final size:54
Alignment explanation
Indices: 26786763--26787098 Score: 324
Period size: 54 Copynumber: 6.2 Consensus size: 54
26786753 GGGAAAAATG
* * * *
26786763 GTAATTTTGTAAATCGATGGTACTTTGGTAATTTTACAAGTCAAAGGTATTTTA
1 GTAATTTTGTAAATCGAGGGTATTTTGGTAATTTTACAAATCAAGGGTATTTTA
** * ** * *
26786817 GTAATTTTACAAATTG-GGGTATTTCAGTAATTTTACAAATC-GGAGGTATTTCA
1 GTAATTTTGTAAATCGAGGGTATTTTGGTAATTTTACAAATCAAG-GGTATTTTA
* * * * * *
26786870 ATAATTTTGCAAATCGGGGGTATTTCGGTAATTTTACAAATCAGGGGTATTTTG
1 GTAATTTTGTAAATCGAGGGTATTTTGGTAATTTTACAAATCAAGGGTATTTTA
** * *
26786924 GTAATTTTACAAA-CTAGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTCA
1 GTAATTTTGTAAATCGA-GGGTATTTTGGTAATTTTACAAATCAAGGGTATTTT-A
* *
26786979 -TAATTTTGCT-AATCGAGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTCA
1 GTAATTTTG-TAAATCGAGGGTATTTTGGTAATTTTACAAATCAAGGGTATTTTA
* * * * *
26787032 ATAATTTTGCT-AATCGAGGGTATTTTGGTAATTTTGCTAATCGAGGGTATTTTG
1 GTAATTTTG-TAAATCGAGGGTATTTTGGTAATTTTACAAATCAAGGGTATTTTA
*
26787086 GTAATTTAGTAAA
1 GTAATTTTGTAAA
26787099 CTAAAGTATT
Statistics
Matches: 236, Mismatches: 37, Indels: 18
0.81 0.13 0.06
Matches are distributed among these distances:
53 44 0.19
54 188 0.80
55 4 0.02
ACGTcount: A:0.30, C:0.09, G:0.20, T:0.40
Consensus pattern (54 bp):
GTAATTTTGTAAATCGAGGGTATTTTGGTAATTTTACAAATCAAGGGTATTTTA
Found at i:26786874 original size:27 final size:27
Alignment explanation
Indices: 26786790--26787092 Score: 192
Period size: 27 Copynumber: 11.3 Consensus size: 27
26786780 TGGTACTTTG
* ** *
26786790 GTAATTTTACAAGTCAAAGGTATTTTA
1 GTAATTTTACAAATCGGAGGTATTTCA
*
26786817 GTAATTTTACAAATTGG-GGTATTTCA
1 GTAATTTTACAAATCGGAGGTATTTCA
26786843 GTAATTTTACAAATCGGAGGTATTTCA
1 GTAATTTTACAAATCGGAGGTATTTCA
* * * *
26786870 ATAATTTTGCAAATCGGGGGTATTTCG
1 GTAATTTTACAAATCGGAGGTATTTCA
**
26786897 GTAATTTTACAAATCAGG-GGTATTTTG
1 GTAATTTTACAAATC-GGAGGTATTTCA
* **
26786924 GTAATTTTACAAACTAGG-GGTATTTTG
1 GTAATTTTACAAA-TCGGAGGTATTTCA
**
26786951 GTAATTTTACAAA-CCAAGGGTATTTTCA
1 GTAATTTTACAAATCGGA-GGTA-TTTCA
* * **
26786979 -TAATTTTGCTAATC-GAGGGTATTTTG
1 GTAATTTTACAAATCGGA-GGTATTTCA
**
26787005 GTAATTTTACAAA-CCAAGGGTATTTCA
1 GTAATTTTACAAATCGGA-GGTATTTCA
* * * **
26787032 ATAATTTTGCTAATC-GAGGGTATTTTG
1 GTAATTTTACAAATCGGA-GGTATTTCA
* * **
26787059 GTAATTTTGCTAATC-GAGGGTATTTTG
1 GTAATTTTACAAATCGGA-GGTATTTCA
26787086 GTAATTT
1 GTAATTT
26787093 AGTAAACTAA
Statistics
Matches: 230, Mismatches: 36, Indels: 20
0.80 0.13 0.07
Matches are distributed among these distances:
26 28 0.12
27 194 0.84
28 8 0.03
ACGTcount: A:0.30, C:0.09, G:0.20, T:0.41
Consensus pattern (27 bp):
GTAATTTTACAAATCGGAGGTATTTCA
Found at i:26786947 original size:81 final size:81
Alignment explanation
Indices: 26786808--26787092 Score: 317
Period size: 81 Copynumber: 3.5 Consensus size: 81
26786798 ACAAGTCAAA
** * ** *
26786808 GGTATTTTAGTAATTTTACAAATTG-GGGTATTTCAGTAATTTTACAAA-TCGGAGGTATTTCAA
1 GGTATTTCGGTAATTTTACAAATCGAGGGTATTTTGGTAATTTTACAAACTAGG-GGTATTTCAA
*
26786871 TAATTTTGCAAATCGGG
65 TAATTTTGCAAATCGAG
***
26786888 GGTATTTCGGTAATTTTACAAATC-AGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGG
1 GGTATTTCGGTAATTTTACAAATCGA-GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTCAA
* * *
26786952 TAATTTTACAAACCAAG
65 TAATTTTGCAAATCGAG
* * * * *
26786969 GGTATTTTC-ATAATTTTGCTAATCGAGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTCAA
1 GGTA-TTTCGGTAATTTTACAAATCGAGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTCAA
*
26787033 TAATTTTGCTAATCGAG
65 TAATTTTGCAAATCGAG
* * *
26787050 GGTATTTTGGTAATTTTGCTAATCGAGGGTATTTTGGTAATTT
1 GGTATTTCGGTAATTTTACAAATCGAGGGTATTTTGGTAATTT
26787093 AGTAAACTAA
Statistics
Matches: 172, Mismatches: 27, Indels: 11
0.82 0.13 0.05
Matches are distributed among these distances:
80 24 0.14
81 140 0.81
82 8 0.05
ACGTcount: A:0.29, C:0.09, G:0.21, T:0.41
Consensus pattern (81 bp):
GGTATTTCGGTAATTTTACAAATCGAGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTCAAT
AATTTTGCAAATCGAG
Found at i:26789053 original size:6 final size:6
Alignment explanation
Indices: 26789044--26789115 Score: 83
Period size: 6 Copynumber: 11.8 Consensus size: 6
26789034 AATTAGAACT
* * *
26789044 AGAATC AGAATT AGAATC AGAATC AGAATC AGAATC AGAATT AGTATC
1 AGAATC AGAATC AGAATC AGAATC AGAATC AGAATC AGAATC AGAATC
*
26789092 AAGTAA-C AGAATC AAAATC AGAAT
1 -AG-AATC AGAATC AGAATC AGAAT
26789116 GTGAATGCAA
Statistics
Matches: 55, Mismatches: 8, Indels: 6
0.80 0.12 0.09
Matches are distributed among these distances:
5 2 0.04
6 49 0.89
7 3 0.05
8 1 0.02
ACGTcount: A:0.51, C:0.12, G:0.15, T:0.21
Consensus pattern (6 bp):
AGAATC
Found at i:26789053 original size:12 final size:11
Alignment explanation
Indices: 26789038--26789084 Score: 58
Period size: 12 Copynumber: 3.9 Consensus size: 11
26789028 AAACATAATT
26789038 AGAACTAGAATC
1 AGAA-TAGAATC
26789050 AGAATTAGAATC
1 AGAA-TAGAATC
26789062 AGAATCAGAATC
1 AGAAT-AGAATC
26789074 AGAATCAGAAT
1 AGAAT-AGAAT
26789085 TAGTATCAAG
Statistics
Matches: 33, Mismatches: 1, Indels: 2
0.92 0.03 0.06
Matches are distributed among these distances:
11 1 0.03
12 32 0.97
ACGTcount: A:0.51, C:0.13, G:0.17, T:0.19
Consensus pattern (11 bp):
AGAATAGAATC
Found at i:26789065 original size:18 final size:18
Alignment explanation
Indices: 26789020--26789084 Score: 78
Period size: 18 Copynumber: 3.6 Consensus size: 18
26789010 AACCCATTAC
* * *
26789020 AGAATAAGAAACATAATT
1 AGAATCAGAATCAGAATT
26789038 AGAA-CTAGAATCAGAATT
1 AGAATC-AGAATCAGAATT
*
26789056 AGAATCAGAATCAGAATC
1 AGAATCAGAATCAGAATT
26789074 AGAATCAGAAT
1 AGAATCAGAAT
26789085 TAGTATCAAG
Statistics
Matches: 41, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
18 40 0.98
19 1 0.02
ACGTcount: A:0.54, C:0.11, G:0.15, T:0.20
Consensus pattern (18 bp):
AGAATCAGAATCAGAATT
Found at i:26789270 original size:27 final size:26
Alignment explanation
Indices: 26789233--26789340 Score: 108
Period size: 27 Copynumber: 4.0 Consensus size: 26
26789223 AACATGCCTG
* *
26789233 CCAGAACAGATATTGTGATAGAGTCA
1 CCAGAACAGATATTGTGACAGAGCCA
* *
26789259 CCAGATACAGATATTTTGCCAGAGCCA
1 CCAGA-ACAGATATTGTGACAGAGCCA
* *
26789286 CCAGAACAGATATTTGTGGCATAGCCA
1 CCAGAACAGATA-TTGTGACAGAGCCA
* * *
26789313 CCAGAATCAGATAATGTGGCAAAGCCA
1 CCAGAA-CAGATATTGTGACAGAGCCA
26789340 C
1 C
26789341 TTAACAGAAT
Statistics
Matches: 70, Mismatches: 9, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
26 12 0.17
27 52 0.74
28 6 0.09
ACGTcount: A:0.36, C:0.22, G:0.21, T:0.20
Consensus pattern (26 bp):
CCAGAACAGATATTGTGACAGAGCCA
Found at i:26789339 original size:54 final size:53
Alignment explanation
Indices: 26789233--26789340 Score: 119
Period size: 54 Copynumber: 2.0 Consensus size: 53
26789223 AACATGCCTG
* * * * *
26789233 CCAGAACAGATATTGTGATAGAGTCACCAGATACAGATATTTTGCCAGAGCCA
1 CCAGAACAGATATTGTGACAGAGCCACCAGATACAGATAATGTGCCAAAGCCA
* * *
26789286 CCAGAACAGATATTTGTGGCATAGCCACCAGA-ATCAGATAATGTGGCAAAGCCA
1 CCAGAACAGATA-TTGTGACAGAGCCACCAGATA-CAGATAATGTGCCAAAGCCA
26789340 C
1 C
26789341 TTAACAGAAT
Statistics
Matches: 45, Mismatches: 8, Indels: 3
0.80 0.14 0.05
Matches are distributed among these distances:
53 13 0.29
54 32 0.71
ACGTcount: A:0.36, C:0.22, G:0.21, T:0.20
Consensus pattern (53 bp):
CCAGAACAGATATTGTGACAGAGCCACCAGATACAGATAATGTGCCAAAGCCA
Found at i:26789547 original size:22 final size:23
Alignment explanation
Indices: 26789497--26789557 Score: 65
Period size: 22 Copynumber: 2.7 Consensus size: 23
26789487 AGGTAAATAC
26789497 GTTTGGCACGAAGCCATAGTCAA
1 GTTTGGCACGAAGCCATAGTCAA
* **
26789520 G-ATGGCACGAAGCCATA-TTTA
1 GTTTGGCACGAAGCCATAGTCAA
26789541 GTTTGGCAC-AGAGCCAT
1 GTTTGGCACGA-AGCCAT
26789558 CGATAAGGGG
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
21 4 0.12
22 27 0.84
23 1 0.03
ACGTcount: A:0.30, C:0.21, G:0.26, T:0.23
Consensus pattern (23 bp):
GTTTGGCACGAAGCCATAGTCAA
Found at i:26789953 original size:27 final size:27
Alignment explanation
Indices: 26789923--26790234 Score: 401
Period size: 27 Copynumber: 11.6 Consensus size: 27
26789913 TAACCCACGA
*
26789923 GGGTATCTCGGTAATTCTACCCTACAG
1 GGGTATTTCGGTAATTCTACCCTACAG
* *
26789950 GGGTATTTCGATAATTCTACCTTACAG
1 GGGTATTTCGGTAATTCTACCCTACAG
* *
26789977 GGGTATTTCAGTAATTCTACCCTAGAG
1 GGGTATTTCGGTAATTCTACCCTACAG
*
26790004 GGGTATTTCGATAATTCTACCCTACAG
1 GGGTATTTCGGTAATTCTACCCTACAG
*
26790031 GGGTATTTCGATAATTCTACCCTACAG
1 GGGTATTTCGGTAATTCTACCCTACAG
* * *
26790058 GGGTATTTCAGTAATTCTACCATATAG
1 GGGTATTTCGGTAATTCTACCCTACAG
* *
26790085 GGGTATTTTGGTAATT-TACCCTATAG
1 GGGTATTTCGGTAATTCTACCCTACAG
* * *
26790111 GGGTATTTCAGTAATTCTACCATATAG
1 GGGTATTTCGGTAATTCTACCCTACAG
* * *
26790138 GGGTATTTTGATAATTCTACCCTATAG
1 GGGTATTTCGGTAATTCTACCCTACAG
* * *
26790165 CGGTATTTCGATAATTCTTCCCTACAG
1 GGGTATTTCGGTAATTCTACCCTACAG
*
26790192 GGGTATTTCGGTAATTCTACCCTATAG
1 GGGTATTTCGGTAATTCTACCCTACAG
* *
26790219 GGTTGTTTCGGTAATT
1 GGGTATTTCGGTAATT
26790235 TTGTAAATCG
Statistics
Matches: 250, Mismatches: 34, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
26 23 0.09
27 227 0.91
ACGTcount: A:0.25, C:0.18, G:0.20, T:0.37
Consensus pattern (27 bp):
GGGTATTTCGGTAATTCTACCCTACAG
Found at i:26790287 original size:27 final size:27
Alignment explanation
Indices: 26790257--26790584 Score: 365
Period size: 27 Copynumber: 12.2 Consensus size: 27
26790247 GGTAAAACGA
** * *
26790257 TAATTTTGTAAATCGTGGGTACTTTGG
1 TAATTTTACAAATCGAGGGTATTTTGG
* * * *
26790284 TAATTTTACAAGTTGAAGGTATTTTAG
1 TAATTTTACAAATCGAGGGTATTTTGG
* *
26790311 TAATTTTTCAAATCG-GGGTATTTTAG
1 TAATTTTACAAATCGAGGGTATTTTGG
* * *
26790337 TAATTTTGCAAATCGAAGGTATTTTAG
1 TAATTTTACAAATCGAGGGTATTTTGG
*
26790364 TAATTTTACAAATCGAGGGTATTTCGG
1 TAATTTTACAAATCGAGGGTATTTTGG
*
26790391 TAATTTTACAAATCAAGGGTATTTTGG
1 TAATTTTACAAATCGAGGGTATTTTGG
*
26790418 TAATTTTACAAA-CTAGGGGTATTTTGG
1 TAATTTTACAAATCGA-GGGTATTTTGG
* *
26790445 TAATTTTACAAACCAAGGGTA-TTTGG
1 TAATTTTACAAATCGAGGGTATTTTGG
* *
26790471 TAATTTTGCTAATCGAGGGTATTTTGG
1 TAATTTTACAAATCGAGGGTATTTTGG
* * ***
26790498 TAATTTTACAAACCAAGGGTATTTCAA
1 TAATTTTACAAATCGAGGGTATTTTGG
* *
26790525 TAATTTTACGAATCAAGGGTATTTTGG
1 TAATTTTACAAATCGAGGGTATTTTGG
* *
26790552 TAATTTTTCTAATCGAGGGTATTTTGG
1 TAATTTTACAAATCGAGGGTATTTTGG
26790579 TAATTT
1 TAATTT
26790585 GGTAAACCAA
Statistics
Matches: 256, Mismatches: 41, Indels: 8
0.84 0.13 0.03
Matches are distributed among these distances:
26 48 0.19
27 206 0.80
28 2 0.01
ACGTcount: A:0.30, C:0.08, G:0.20, T:0.42
Consensus pattern (27 bp):
TAATTTTACAAATCGAGGGTATTTTGG
Found at i:26790381 original size:134 final size:134
Alignment explanation
Indices: 26790229--26790584 Score: 358
Period size: 134 Copynumber: 2.7 Consensus size: 134
26790219 GGTTGTTTCG
** ** **
26790229 GTAATTTTGTAAATCGAGGGTAAAACGATAATTTTGTAAATCGTGGGTACTTTGGTAATTTTAC-
1 GTAATTTTACAAATCGAGGGTAAAACGATAATTTTACAAATCAAGGGTACTTTGGTAATTTTACA
* * * * *
26790293 AAGTTGAAGGTATTTTAGTAATTTTTCAAATC-GGGGTATTTTAGTAATTTTGCAAATCGAAGGT
66 AACTAG-AGGTATTTTAGTAATTTTACAAACCAAGGGTA-TTTAGTAATTTTGCAAATCGAAGGT
26790357 ATTTTA
129 ATTTTA
*** * *
26790363 GTAATTTTACAAATCGAGGGTATTTCGGTAATTTTACAAATCAAGGGTATTTTGGTAATTTTACA
1 GTAATTTTACAAATCGAGGGTAAAACGATAATTTTACAAATCAAGGGTACTTTGGTAATTTTACA
* * * * *
26790428 AACTAGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTGGTAATTTTGCTAATCGAGGGTAT
66 AACTAGAGGTATTTTAGTAATTTTACAAACCAAGGGTATTTAGTAATTTTGCAAATCGAAGGTAT
*
26790493 TTTG
131 TTTA
* * *** * * * * *
26790497 GTAATTTTACAAACCAAGGGTATTTCAATAATTTTACGAATCAAGGGTATTTTGGTAATTTTTCT
1 GTAATTTTACAAATCGAGGGTAAAACGATAATTTTACAAATCAAGGGTACTTTGGTAATTTTACA
* *
26790562 AA-TCGAGGGTATTTTGGTAATTT
66 AACTAGA-GGTATTTTAGTAATTT
26790585 GGTAAACCAA
Statistics
Matches: 188, Mismatches: 31, Indels: 6
0.84 0.14 0.03
Matches are distributed among these distances:
133 2 0.01
134 177 0.94
135 9 0.05
ACGTcount: A:0.31, C:0.08, G:0.21, T:0.41
Consensus pattern (134 bp):
GTAATTTTACAAATCGAGGGTAAAACGATAATTTTACAAATCAAGGGTACTTTGGTAATTTTACA
AACTAGAGGTATTTTAGTAATTTTACAAACCAAGGGTATTTAGTAATTTTGCAAATCGAAGGTAT
TTTA
Found at i:26790592 original size:134 final size:135
Alignment explanation
Indices: 26790273--26790594 Score: 382
Period size: 134 Copynumber: 2.4 Consensus size: 135
26790263 TGTAAATCGT
* ** * * ** * *
26790273 GGGTACTTTGGTAATTTTACAAGTTGA-AGGTATTTTAGTAATTTTTCAAATC-GGGGTATTTTA
1 GGGTATTTTGGTAATTTTACAA-ACGAGGGGTATTTTGGTAATTTGACAAACCAAGGGTATTTTA
* * **
26790336 GTAATTTTGCAAATCGAAGGTATTTTAGTAATTTTACAAATCGAGGGTATTTCGGTAATTTTACA
65 GTAATTTTGCAAATCGAAGGTATTTTAGTAATTTTACAAACCAAGGGTATTTCAATAATTTTACA
26790401 AATCAA
130 AATCAA
* * *
26790407 GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACCAAGGGTA-TTTGG
1 GGGTATTTTGGTAATTTTACAAACGAGGGGTATTTTGGTAATTTGACAAACCAAGGGTATTTTAG
* * * *
26790471 TAATTTTGCTAATCGAGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTCAATAATTTTACGA
66 TAATTTTGCAAATCGAAGGTATTTTAGTAATTTTACAAACCAAGGGTATTTCAATAATTTTACAA
26790536 ATCAA
131 ATCAA
* * **
26790541 GGGTATTTTGGTAATTTTTCTAATCGA-GGGTATTTTGGTAATTTGGTAAACCAA
1 GGGTATTTTGGTAATTTTAC-AAACGAGGGGTATTTTGGTAATTTGACAAACCAA
26790595 AGTATTCTAA
Statistics
Matches: 161, Mismatches: 24, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
133 1 0.01
134 151 0.94
135 9 0.06
ACGTcount: A:0.30, C:0.09, G:0.20, T:0.40
Consensus pattern (135 bp):
GGGTATTTTGGTAATTTTACAAACGAGGGGTATTTTGGTAATTTGACAAACCAAGGGTATTTTAG
TAATTTTGCAAATCGAAGGTATTTTAGTAATTTTACAAACCAAGGGTATTTCAATAATTTTACAA
ATCAA
Found at i:26791463 original size:27 final size:27
Alignment explanation
Indices: 26791432--26791520 Score: 124
Period size: 27 Copynumber: 3.3 Consensus size: 27
26791422 TACATTACTG
* **
26791432 TTTTACCCTCAATTTAAAAAATTACTG
1 TTTTACCCTCGATTTAAAAAATTACCA
*
26791459 TTTTACCCTCGATTTACAAAATTACCA
1 TTTTACCCTCGATTTAAAAAATTACCA
* *
26791486 TTTTACCCTTGATTTATAAAATTACCA
1 TTTTACCCTCGATTTAAAAAATTACCA
26791513 TTTTACCC
1 TTTTACCC
26791521 CTAGGGTGTT
Statistics
Matches: 56, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 56 1.00
ACGTcount: A:0.33, C:0.22, G:0.03, T:0.42
Consensus pattern (27 bp):
TTTTACCCTCGATTTAAAAAATTACCA
Found at i:26792040 original size:31 final size:31
Alignment explanation
Indices: 26792005--26792115 Score: 159
Period size: 31 Copynumber: 3.6 Consensus size: 31
26791995 TTGCATTCAC
* * * * *
26792005 ATTCTGATTTTGATTCTGTTACCTGATACTA
1 ATTCTGATTCTAATTCTGTCACCTGATTCTG
*
26792036 ATTCTGATTCTAATTCTGTCACCTAATTCTG
1 ATTCTGATTCTAATTCTGTCACCTGATTCTG
*
26792067 ATTCTGATTCTAGTTCTGTCACCTGATTCTG
1 ATTCTGATTCTAATTCTGTCACCTGATTCTG
26792098 ATTCTGATTCTAATTCTG
1 ATTCTGATTCTAATTCTG
26792116 ATTCTAGTTC
Statistics
Matches: 71, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 71 1.00
ACGTcount: A:0.21, C:0.20, G:0.13, T:0.47
Consensus pattern (31 bp):
ATTCTGATTCTAATTCTGTCACCTGATTCTG
Found at i:26792070 original size:6 final size:6
Alignment explanation
Indices: 26792005--26792129 Score: 71
Period size: 6 Copynumber: 20.3 Consensus size: 6
26791995 TTGCATTCAC
* * * *
26792005 ATTCTG ATTTTG ATTCTG -TTACCTG ATACTA ATTCTG ATTCTA ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* * *
26792054 -TCACCTA ATTCTG ATTCTG ATTCT- AGTTCTG -TCACCTG ATTCTG ATTCTG
1 AT--TCTG ATTCTG ATTCTG ATTCTG A-TTCTG AT--TCTG ATTCTG ATTCTG
*
26792104 ATTCTA ATTCTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG ATTCTG A-TTCTG AT
26792130 AATGTTTCTT
Statistics
Matches: 90, Mismatches: 16, Indels: 26
0.68 0.12 0.20
Matches are distributed among these distances:
5 6 0.07
6 72 0.80
7 9 0.10
8 3 0.03
ACGTcount: A:0.21, C:0.19, G:0.13, T:0.47
Consensus pattern (6 bp):
ATTCTG
Found at i:26815239 original size:500 final size:500
Alignment explanation
Indices: 26814280--26815272 Score: 1413
Period size: 500 Copynumber: 2.0 Consensus size: 500
26814270 AGACCCCTTT
* * *
26814280 TCATAATTCCATATGCAATACACTTGTTTATAAATAAAGCATCATGGGATCATACATACTGAAGT
1 TCATAATTCCATATGCAATACACTTGTTTATAAATAAACCATCATGGGATCATACATACTAAACT
* * *
26814345 AAAATGGCGAACACTTATAAACCCATGTAACCTTACAACATTCTTAGCATTTTTGGGTTTGAGAG
66 AAAATAGCGAACACTTATAAACCCATGCAACCTTACAACATTCTTAGCATTTTTGGGTTGGAGAG
* * * ** * *
26814410 TAGAAACTCCCCTGATGTTTCTTTGCCTTGTTCGCTTAGCTTTTCGAGACACTAGAGCTTCCATT
131 TAGAAACTCACCTGATGCTTCTTCGCCTTGTAAGCTTAGCTTTTCCAGACACCAGAGCTTCCATT
* * * * *
26814475 TTCTTGGAATCTATGCAAGACAACCAATTCATGGGTTAAACTCAACAATCCGAGTTTAAATATAG
196 CTCCTGGAAGCTAAGCAAGACAACCAATTCATGGGTTAAACTCAACAATCCCAGTTTAAATATAG
*
26814540 TTTTCCAAAAACATGCAGAATCCTTAAAATGGTTTATAGAAACCATTAATTTTGGTTTTTAAATC
261 TTTTCCAAAAACATGCAGAATCCTTAAAATGGTTTATAGAAACCATTAATTTTGGTTCTTAAATC
* *
26814605 TTACGTAAGCTAAAGGACTTAGAACCTTACCAGCTTACTCGATCCTCTATTTTCCTAACTCAAAA
326 TTACATAAGCTAAAGGACTTAGAACCTTACCAGCTTACTAGATCCTCTATTTTCCTAACTCAAAA
* ** * * * *
26814670 CTCATGATCACTGCTCCATGTAGAGCATCTCGTAATCATCCAGTCTTTGGATCAACGAATAAGAT
391 CTCATGATCACTACTCCATACAAAGCATCTCATAATCATCCAGTCTTTAGATCAACGAATAAAAT
*
26814735 GAATAAAGAGAAGAAAATGAAATAGAATTGAAATGAATACCCTAG
456 GAATAAAGAGAAGAAAATAAAATAGAATTGAAATGAATACCCTAG
* *
26814780 TCATAATTCCATATGCAATACATTTGTTTATAAATAAACCATCATGGGATTATACATACTAAACT
1 TCATAATTCCATATGCAATACACTTGTTTATAAATAAACCATCATGGGATCATACATACTAAACT
* * * *
26814845 AAAATAGCGGACACTTATAGACCCATGCAACTTTACAACATTCTTAGCATTTTTGGGTTGGAGTG
66 AAAATAGCGAACACTTATAAACCCATGCAACCTTACAACATTCTTAGCATTTTTGGGTTGGAGAG
*
26814910 TAGAAACTCACCTGATGCTTCTTCGCCTTGTAAGCTTAGCTTTTCCAGACACCAGAGCTTTCATT
131 TAGAAACTCACCTGATGCTTCTTCGCCTTGTAAGCTTAGCTTTTCCAGACACCAGAGCTTCCATT
* * * *
26814975 CTCCTGGCAGCTAAGCAAGATAACCAATTCATTGGTTAAACTCAACAATCCCAGTTTAAGCT-TA
196 CTCCTGGAAGCTAAGCAAGACAACCAATTCATGGGTTAAACTCAACAATCCCAGTTTAA-ATATA
* * * * * *
26815039 GTTTTTCAGAAACATGTAGAATCCTTAAAATGGTTT-TTGCAAGCCTTTAATTTTGGTTCTTAAA
260 GTTTTCCAAAAACATGCAGAATCCTTAAAATGGTTTATAG-AAACCATTAATTTTGGTTCTTAAA
* *
26815103 TGTCT-CATACA-CTAAAGGACTTAGAACCTTACCAGCTTACTAGATCCTCTATTTT-CTCGACT
324 TCT-TACATA-AGCTAAAGGACTTAGAACCTTACCAGCTTACTAGATCCTCTATTTTCCT-AACT
* * *
26815165 TAAAACTCATGATCACTACTCCATACAAAGCATCTCATAATCATCCTGTCTTTAGATCAATG-AT
386 CAAAACTCATGATCACTACTCCATACAAAGCATCTCATAATCATCCAGTCTTTAGATCAACGAAT
* *
26815229 GAAAATGAATAAAGAGAATAAAATAAAATAGAATTGAGATGAAT
451 -AAAATGAATAAAGAGAAGAAAATAAAATAGAATTGAAATGAAT
26815273 CCTTGACTTC
Statistics
Matches: 434, Mismatches: 53, Indels: 12
0.87 0.11 0.02
Matches are distributed among these distances:
499 6 0.01
500 425 0.98
501 3 0.01
ACGTcount: A:0.34, C:0.20, G:0.14, T:0.32
Consensus pattern (500 bp):
TCATAATTCCATATGCAATACACTTGTTTATAAATAAACCATCATGGGATCATACATACTAAACT
AAAATAGCGAACACTTATAAACCCATGCAACCTTACAACATTCTTAGCATTTTTGGGTTGGAGAG
TAGAAACTCACCTGATGCTTCTTCGCCTTGTAAGCTTAGCTTTTCCAGACACCAGAGCTTCCATT
CTCCTGGAAGCTAAGCAAGACAACCAATTCATGGGTTAAACTCAACAATCCCAGTTTAAATATAG
TTTTCCAAAAACATGCAGAATCCTTAAAATGGTTTATAGAAACCATTAATTTTGGTTCTTAAATC
TTACATAAGCTAAAGGACTTAGAACCTTACCAGCTTACTAGATCCTCTATTTTCCTAACTCAAAA
CTCATGATCACTACTCCATACAAAGCATCTCATAATCATCCAGTCTTTAGATCAACGAATAAAAT
GAATAAAGAGAAGAAAATAAAATAGAATTGAAATGAATACCCTAG
Found at i:26820141 original size:13 final size:14
Alignment explanation
Indices: 26820113--26820145 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
26820103 GAAATGTTTT
26820113 TATGAAAATAGATA
1 TATGAAAATAGATA
*
26820127 TATGAAACT-GATA
1 TATGAAAATAGATA
26820140 TATGAA
1 TATGAA
26820146 GTGTTTATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 10 0.56
14 8 0.44
ACGTcount: A:0.52, C:0.03, G:0.15, T:0.30
Consensus pattern (14 bp):
TATGAAAATAGATA
Found at i:26821189 original size:21 final size:21
Alignment explanation
Indices: 26821165--26821225 Score: 70
Period size: 21 Copynumber: 2.9 Consensus size: 21
26821155 GAGCGTGTAG
26821165 AGTAGCCACACAGGCATGTGA
1 AGTAGCCACACAGGCATGTGA
* *
26821186 AGTAACCACATC-GGCATGTGT
1 AGTAGCCACA-CAGGCATGTGA
* *
26821207 GGTAGCCACACAGCCATGT
1 AGTAGCCACACAGGCATGT
26821226 TTCTGAGCCA
Statistics
Matches: 33, Mismatches: 5, Indels: 4
0.79 0.12 0.10
Matches are distributed among these distances:
20 1 0.03
21 31 0.94
22 1 0.03
ACGTcount: A:0.30, C:0.26, G:0.26, T:0.18
Consensus pattern (21 bp):
AGTAGCCACACAGGCATGTGA
Found at i:26826047 original size:40 final size:40
Alignment explanation
Indices: 26825992--26826216 Score: 308
Period size: 40 Copynumber: 5.6 Consensus size: 40
26825982 TATTCGGATG
*
26825992 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTCCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
26826032 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
26826072 ATATCCGGGCGAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC--G-AGTTACT
* * *
26826115 ATACCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * *
26826155 ATATCCGGGCTAAGACCCAAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
26826195 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
26826217 TACTTGGGTT
Statistics
Matches: 161, Mismatches: 21, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
39 13 0.08
40 113 0.70
43 35 0.22
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:26826235 original size:83 final size:80
Alignment explanation
Indices: 26825992--26826216 Score: 362
Period size: 83 Copynumber: 2.8 Consensus size: 80
26825982 TATTCGGATG
*
26825992 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTCCTATATCCGGGCTAAGTCCCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTAAGTCCCGAAGGCA
26826057 TTTGTGCTAGTGACT
66 TTTGTGCTAGTGACT
* *
26826072 ATATCCGGGCGAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCTATACCCGGGCTAAGTCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC--G-AGTTGCTATATCCGGGCTAAGTCCCGAAG
26826137 GCATTTGTGCTAGTGACT
63 GCATTTGTGCTAGTGACT
* * *
26826155 ATATCCGGGCTAAGACCCAAAGGCATTTGTGCGAGTTGCTATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTAAGTCCCGAAGG
26826217 TACTTGGGTT
Statistics
Matches: 134, Mismatches: 8, Indels: 7
0.90 0.05 0.05
Matches are distributed among these distances:
79 15 0.11
80 43 0.32
81 1 0.01
82 1 0.01
83 74 0.55
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (80 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTAAGTCCCGAAGGCA
TTTGTGCTAGTGACT
Found at i:26834149 original size:39 final size:40
Alignment explanation
Indices: 26834095--26834317 Score: 299
Period size: 39 Copynumber: 5.6 Consensus size: 40
26834085 TATTCGGATG
*
26834095 ATATCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTCCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
26834134 ATATCCGGGCTAAGT-CCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
26834173 ATATCCGGGCGAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC--G-AGTTACT
* * *
26834216 ATACCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
26834256 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
26834296 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
26834318 TACTTGGGTT
Statistics
Matches: 161, Mismatches: 19, Indels: 8
0.86 0.10 0.04
Matches are distributed among these distances:
39 64 0.40
40 62 0.39
43 35 0.22
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:26834251 original size:83 final size:80
Alignment explanation
Indices: 26834095--26834317 Score: 353
Period size: 83 Copynumber: 2.8 Consensus size: 80
26834085 TATTCGGATG
*
26834095 ATATCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTCCTATATCCGGGCTAAGT-CCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTAAGTCCCGAAGGCA
26834158 TTTGTGCTAGTGACT
66 TTTGTGCTAGTGACT
* *
26834173 ATATCCGGGCGAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCTATACCCGGGCTAAGTCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC--G-AGTTGCTATATCCGGGCTAAGTCCCGAAG
26834238 GCATTTGTGCTAGTGACT
63 GCATTTGTGCTAGTGACT
* *
26834256 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTAAGTCCCGAAGG
26834318 TACTTGGGTT
Statistics
Matches: 133, Mismatches: 7, Indels: 9
0.89 0.05 0.06
Matches are distributed among these distances:
78 14 0.11
79 31 0.23
80 12 0.09
81 2 0.02
82 20 0.15
83 54 0.41
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.26
Consensus pattern (80 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTAAGTCCCGAAGGCA
TTTGTGCTAGTGACT
Found at i:26843354 original size:43 final size:41
Alignment explanation
Indices: 26843307--26843448 Score: 119
Period size: 43 Copynumber: 3.3 Consensus size: 41
26843297 ATGATACCGA
26843307 TGTCCCAGACATGGTCCTTTACATAAATCTTAATCGAGGCCTG
1 TGTCCCAGACATGGT-CTTTACATAAATC-TAATCGAGGCCTG
* ** ** *
26843350 TGTCCAAGACACAGTC-TTACGCGAAATC-AGATACGATGCC-G
1 TGTCCCAGACATGGTCTTTAC-ATAAATCTA-AT-CGAGGCCTG
* *
26843391 ATATCCCAGACATGGTCTTATACGTAAATCTCAATCGAGGCCTG
1 -TGTCCCAGACATGGTCTT-TACATAAATCT-AATCGAGGCCTG
26843435 TGTCCCAGACATGG
1 TGTCCCAGACATGG
26843449 CCTTACACGA
Statistics
Matches: 76, Mismatches: 14, Indels: 18
0.70 0.13 0.17
Matches are distributed among these distances:
40 1 0.01
41 7 0.09
42 24 0.32
43 37 0.49
44 6 0.08
45 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.20, T:0.25
Consensus pattern (41 bp):
TGTCCCAGACATGGTCTTTACATAAATCTAATCGAGGCCTG
Found at i:26843367 original size:85 final size:85
Alignment explanation
Indices: 26843278--26843445 Score: 257
Period size: 85 Copynumber: 2.0 Consensus size: 85
26843268 CGTAGATAGG
* * *
26843278 GTCTTACACGAAATCAGATATGATACCGATGTCCCAGACATGGTCCTT-TACATAAATCTTAATC
1 GTCTTACACGAAATCAGATACGATACCGATATCCCAGACATGGT-CTTATACATAAATCTCAATC
26843342 GAGGCCTGTGTCCAAGACACA
65 GAGGCCTGTGTCCAAGACACA
* * *
26843363 GTCTTACGCGAAATCAGATACGATGCCGATATCCCAGACATGGTCTTATACGTAAATCTCAATCG
1 GTCTTACACGAAATCAGATACGATACCGATATCCCAGACATGGTCTTATACATAAATCTCAATCG
*
26843428 AGGCCTGTGTCCCAGACA
66 AGGCCTGTGTCCAAGACA
26843446 TGGCCTTACA
Statistics
Matches: 75, Mismatches: 7, Indels: 2
0.89 0.08 0.02
Matches are distributed among these distances:
84 3 0.04
85 72 0.96
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (85 bp):
GTCTTACACGAAATCAGATACGATACCGATATCCCAGACATGGTCTTATACATAAATCTCAATCG
AGGCCTGTGTCCAAGACACA
Found at i:26843409 original size:42 final size:41
Alignment explanation
Indices: 26843277--26843410 Score: 103
Period size: 42 Copynumber: 3.2 Consensus size: 41
26843267 TCGTAGATAG
* *
26843277 GGTCTTACACGAAATCAGATATGATACCGATGTCCCAGACAT
1 GGTCTTAC-CGAAATCAGATACGATGCCGATGTCCCAGACAT
** * * *
26843319 GGTCCTTTACATAAATCTTA-AT-CGAGGCCTG-TGTCCAAGACAC
1 GGT-C-TTACCGAAATC--AGATACGATGCC-GATGTCCCAGACAT
* *
26843362 AGTCTTACGCGAAATCAGATACGATGCCGATATCCCAGACAT
1 GGTCTTAC-CGAAATCAGATACGATGCCGATGTCCCAGACAT
26843404 GGTCTTA
1 GGTCTTA
26843411 TACGTAAATC
Statistics
Matches: 68, Mismatches: 15, Indels: 18
0.67 0.15 0.18
Matches are distributed among these distances:
40 1 0.01
41 7 0.10
42 30 0.44
43 22 0.32
44 7 0.10
45 1 0.01
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.25
Consensus pattern (41 bp):
GGTCTTACCGAAATCAGATACGATGCCGATGTCCCAGACAT
Found at i:26850723 original size:42 final size:42
Alignment explanation
Indices: 26850621--26850772 Score: 137
Period size: 43 Copynumber: 3.6 Consensus size: 42
26850611 TACAATGTCG
* * * *
26850621 ATGTCCTAGACGTGGTCTTACATGTAATTCAATACCGATGCCT
1 ATGTCCCAGACATGGTCTTACACGTAAATCAATA-CGATGCCT
* * * * *
26850664 CTGTCCCAAATAGGGTCTTACACG-AAATCAAATACGATGCCA
1 ATGTCCCAGACATGGTCTTACACGTAAATC-AATACGATGCCT
* *
26850706 ATGTCCCAGACATGGTCTTATACGTAAATCTCAAT-CGAGGCCT
1 ATGTCCCAGACATGGTCTTACACGTAAA--TCAATACGATGCCT
* *
26850749 GTGTCCCAGACAAGGTCTTACACG
1 ATGTCCCAGACATGGTCTTACACG
26850773 ATATCTCAGA
Statistics
Matches: 86, Mismatches: 19, Indels: 8
0.76 0.17 0.07
Matches are distributed among these distances:
42 30 0.35
43 51 0.59
44 3 0.03
45 2 0.02
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.26
Consensus pattern (42 bp):
ATGTCCCAGACATGGTCTTACACGTAAATCAATACGATGCCT
Found at i:26851844 original size:21 final size:21
Alignment explanation
Indices: 26851820--26851868 Score: 80
Period size: 22 Copynumber: 2.3 Consensus size: 21
26851810 ATTTTTTCAT
26851820 AATTAAGCACAGAAATAGACA
1 AATTAAGCACAGAAATAGACA
*
26851841 AATTAAATCACAGAAATAGACA
1 AATT-AAGCACAGAAATAGACA
26851863 AATTAA
1 AATTAA
26851869 ATCACATAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
21 6 0.23
22 20 0.77
ACGTcount: A:0.59, C:0.12, G:0.10, T:0.18
Consensus pattern (21 bp):
AATTAAGCACAGAAATAGACA
Found at i:26851854 original size:22 final size:22
Alignment explanation
Indices: 26851827--26851879 Score: 97
Period size: 22 Copynumber: 2.4 Consensus size: 22
26851817 CATAATTAAG
26851827 CACAGAAATAGACAAATTAAAT
1 CACAGAAATAGACAAATTAAAT
26851849 CACAGAAATAGACAAATTAAAT
1 CACAGAAATAGACAAATTAAAT
*
26851871 CACATAAAT
1 CACAGAAAT
26851880 TTTCACAGAT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.58, C:0.15, G:0.08, T:0.19
Consensus pattern (22 bp):
CACAGAAATAGACAAATTAAAT
Found at i:26865757 original size:39 final size:40
Alignment explanation
Indices: 26865712--26865879 Score: 106
Period size: 40 Copynumber: 4.2 Consensus size: 40
26865702 CGGGGTTTAG
* * *
26865712 CCGGATATAACCACTCGCA-CAAGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
*** * *
26865751 CCGGATATGGTCACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
** * * * **
26865791 CCGGATATAGTCGCTAGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGA-CTTAAC
* ** * * * *
26865831 CCGGATGTAGTCGCTTAGCACAAAAGCCTTCGGGACTTAGC
1 CCGGATATAACCAC-TAGCATAAAGGCCTTCGGGACTTAAC
26865872 CCGGATAT
1 CCGGATAT
26865880 CATTCGAGTA
Statistics
Matches: 109, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
39 18 0.17
40 61 0.56
41 27 0.25
42 3 0.03
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.24
Consensus pattern (40 bp):
CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
Found at i:26865862 original size:41 final size:40
Alignment explanation
Indices: 26865735--26865879 Score: 193
Period size: 40 Copynumber: 3.6 Consensus size: 40
26865725 CTCGCACAAG
* * * * *
26865735 GCCTTCGGGTCTTAACCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
26865775 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
* * *
26865815 GCCTTC-GGATCTTAGTCCGGATGTAGTCGCTTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCGC-TAGCACAAAT
26865856 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
26865880 CATTCGAGTA
Statistics
Matches: 92, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
39 3 0.03
40 59 0.64
41 27 0.29
42 3 0.03
ACGTcount: A:0.23, C:0.26, G:0.25, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
Found at i:26867108 original size:38 final size:38
Alignment explanation
Indices: 26867066--26867141 Score: 143
Period size: 38 Copynumber: 2.0 Consensus size: 38
26867056 CAAGAACTCC
*
26867066 TTCCTCCTTCCTTAGAATTTTTGGCCAAAAGAAATGAA
1 TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
26867104 TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
1 TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
26867142 AAAGGATGAA
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.32, C:0.22, G:0.13, T:0.33
Consensus pattern (38 bp):
TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
Found at i:26869293 original size:39 final size:39
Alignment explanation
Indices: 26869176--26869385 Score: 316
Period size: 39 Copynumber: 5.3 Consensus size: 39
26869166 GCTCCTCGTT
* *
26869176 CAAATGCCTTCGGGACATAGCCC-GATTATAGTAAT-TCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGT-ATCTCGCA
* * *
26869216 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
26869256 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
*
26869295 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGGA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
26869334 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
26869373 CAAATGCCTTCGG
1 CAAATGCCTTCGG
26869386 ATCTTAGTCC
Statistics
Matches: 160, Mismatches: 8, Indels: 5
0.92 0.05 0.03
Matches are distributed among these distances:
39 112 0.70
40 44 0.28
41 4 0.03
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (39 bp):
CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
Found at i:26869421 original size:78 final size:80
Alignment explanation
Indices: 26869176--26869437 Score: 312
Period size: 78 Copynumber: 3.3 Consensus size: 80
26869166 GCTCCTCGTT
* * *
26869176 CAAATGCCTTCGGGACATAGCCC-GATTATAGTAAT-TCGCACAAATGCCTTCGGGACTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCACAAATGCCTTC-GGACTTAGCCC
26869239 GGAT-TTAGTAAC-TCGCA
63 GGATATTAGT-ACTTCGCA
*
26869256 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGGCTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGACTTAGCCCGGA
*
26869320 -ATTAGTA-TCTCGGA
66 TATTAGTACT-TCGCA
*
26869334 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGA-CTTAGCCCGG
*
26869398 ATATT-GTCACTTAGCA
65 ATATTAGT-ACTTCGCA
*
26869414 C-AA-GCCTTCGGGACTTAGCTCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
26869438 CATCATTCAA
Statistics
Matches: 162, Mismatches: 10, Indels: 21
0.84 0.05 0.11
Matches are distributed among these distances:
77 1 0.01
78 84 0.52
79 51 0.31
80 25 0.15
81 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.26
Consensus pattern (80 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGACTTAGCCCGGA
TATTAGTACTTCGCA
Found at i:26877382 original size:39 final size:39
Alignment explanation
Indices: 26877290--26877511 Score: 247
Period size: 39 Copynumber: 5.6 Consensus size: 39
26877280 GCTCCTCGTT
* * *
26877290 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAATTCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCA
* *
26877330 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTC-CA
1 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCA
*
26877369 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCA
*
26877408 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCA
* * * *
26877447 CAAATGCCTTCGGATCTTAGTCCGGATATT-GTCACTTAGCA
1 CAAATGCCTTCGG-GCTTAGCCCGGA-ATTAGTAAC-TCGCA
26877488 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGG-CTTAGCCCGGA
26877512 CATCATTCAA
Statistics
Matches: 163, Mismatches: 13, Indels: 13
0.86 0.07 0.07
Matches are distributed among these distances:
38 19 0.12
39 88 0.54
40 46 0.28
41 10 0.06
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (39 bp):
CAAATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCA
Found at i:26877472 original size:117 final size:119
Alignment explanation
Indices: 26877290--26877511 Score: 280
Period size: 117 Copynumber: 1.9 Consensus size: 119
26877280 GCTCCTCGTT
*
26877290 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACATAGCCCGGATATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCGG
26877355 AT-TTAGTAACTC--CACAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
66 ATATT-GTAACTCAGCAC-AA-GCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* **
26877408 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGT-ATCTCGCACAAATGCCTTC-GGATCTTAGTC
1 CAAATGCCTTCGGGACATAGCCCGGATA-TAGTAAT-TCGCACAAATGCCTTCGGGA-CTTAACC
* *
26877469 CGGATATTGTCACTTAGCACAAGCCTTCGGGACTTAGCCCGGA
63 CGGATATTGTAACTCAGCACAAGCCTTCGGGACTTAGCCCGGA
26877512 CATCATTCAA
Statistics
Matches: 91, Mismatches: 6, Indels: 14
0.82 0.05 0.13
Matches are distributed among these distances:
116 6 0.07
117 53 0.58
118 29 0.32
119 3 0.03
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (119 bp):
CAAATGCCTTCGGGACATAGCCCGGATATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCGG
ATATTGTAACTCAGCACAAGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:26880917 original size:46 final size:47
Alignment explanation
Indices: 26880774--26880993 Score: 145
Period size: 46 Copynumber: 4.7 Consensus size: 47
26880764 GGTAGGATGT
* *
26880774 CGATGCCATGTCCCAAACATGGTCTTACGCTAGCT-T--TACTC-GTAGC
1 CGATG-CATGTCCCAAACAT-GTCTTACACTAGCTCTCGT-CTCAATAGC
* * * * * * *
26880820 CAATGCATGTCCCAGACATGTCTTACATTGGCT-TACATCTCGA-GGC
1 CGATGCATGTCCCAAACATGTCTTACACTAGCTCT-CGTCTCAATAGC
*
26880866 TGATGCATGTCCCAAACATGTCTTACACTAGCTCTCGTCTCAAT-GC
1 CGATGCATGTCCCAAACATGTCTTACACTAGCTCTCGTCTCAATAGC
*** * *
26880912 CGATGCCATGTCTTGAACATGGTCTTACACTGGCTCTCG--T-AATGTGGC
1 CGATG-CATGTCCCAAACAT-GTCTTACACTAGCTCTCGTCTCAA--TAGC
* *
26880960 CGATGCATGTCCTAGACATGTCTTACACTAGCTC
1 CGATGCATGTCCCAAACATGTCTTACACTAGCTC
26880994 ACAATAGTCC
Statistics
Matches: 140, Mismatches: 23, Indels: 22
0.76 0.12 0.12
Matches are distributed among these distances:
44 12 0.09
45 15 0.11
46 64 0.46
47 25 0.18
48 24 0.17
ACGTcount: A:0.22, C:0.29, G:0.20, T:0.30
Consensus pattern (47 bp):
CGATGCATGTCCCAAACATGTCTTACACTAGCTCTCGTCTCAATAGC
Found at i:26886099 original size:38 final size:38
Alignment explanation
Indices: 26886057--26886237 Score: 254
Period size: 38 Copynumber: 4.8 Consensus size: 38
26886047 TTTGGGCTAA
**
26886057 ATCCCGCAGGCTTAATGCTGGTATTATATCCGGGTTTT
1 ATCCCGCAGGCTTCGTGCTGGTATTATATCCGGGTTTT
*
26886095 ATCCCGCAGGCTTCGTGCTGGTATTATATCCGAGTTTT
1 ATCCCGCAGGCTTCGTGCTGGTATTATATCCGGGTTTT
* * **
26886133 ATCCCACAGGCTTCGTGCTAGTATTATATTTGGGTTTT
1 ATCCCGCAGGCTTCGTGCTGGTATTATATCCGGGTTTT
** **
26886171 ATCCTACAGGCTTCGTGCTGGTATTATATCCGGGTTAA
1 ATCCCGCAGGCTTCGTGCTGGTATTATATCCGGGTTTT
*
26886209 ATCCCGCAGGCTTAGTGCTGGTATTATAT
1 ATCCCGCAGGCTTCGTGCTGGTATTATAT
26886238 TCGAGCTTAA
Statistics
Matches: 126, Mismatches: 17, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
38 126 1.00
ACGTcount: A:0.19, C:0.21, G:0.23, T:0.37
Consensus pattern (38 bp):
ATCCCGCAGGCTTCGTGCTGGTATTATATCCGGGTTTT
Found at i:26886267 original size:40 final size:38
Alignment explanation
Indices: 26886054--26886270 Score: 204
Period size: 38 Copynumber: 5.7 Consensus size: 38
26886044 ATATTTGGGC
** *
26886054 TAAATCCCGCAGGCTTAATGCTGGTATTATATCCGGGT
1 TAAATCCCGCAGGCTTCGTGCTGGTATTATATCCGGCT
**
26886092 TTTATCCCGCAGGCTTCGTGCTGGTATTATATCCGAG-T
1 TAAATCCCGCAGGCTTCGTGCTGGTATTATATCCG-GCT
** * * ** *
26886130 TTTATCCCACAGGCTTCGTGCTAGTATTATATTTGGGT
1 TAAATCCCGCAGGCTTCGTGCTGGTATTATATCCGGCT
** ** *
26886168 TTTATCCTACAGGCTTCGTGCTGGTATTATATCCGGGT
1 TAAATCCCGCAGGCTTCGTGCTGGTATTATATCCGGCT
* *
26886206 TAAATCCCGCAGGCTTAGTGCTGGTATTATATTCGAGCT
1 TAAATCCCGCAGGCTTCGTGCTGGTATTATATCCG-GCT
*
26886245 TAAAGTTCCGCAGG-TTCTGTGCTGGT
1 TAAA-TCCCGCAGGCTTC-GTGCTGGT
26886271 GACTGGATTC
Statistics
Matches: 153, Mismatches: 21, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
37 1 0.01
38 127 0.83
39 9 0.06
40 16 0.10
ACGTcount: A:0.19, C:0.21, G:0.24, T:0.36
Consensus pattern (38 bp):
TAAATCCCGCAGGCTTCGTGCTGGTATTATATCCGGCT
Done.