Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 82679320
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4050000 characters in sequence are not A, C, G, or T
File 88 of 255
Found at i:26891767 original size:38 final size:37
Alignment explanation
Indices: 26891711--26891905 Score: 237
Period size: 38 Copynumber: 5.1 Consensus size: 37
26891701 ATATTTGATG
**
26891711 TATATCCGGGTTAAATCCCGCAGGCTTAGTGCTGGTAT
1 TATATCC-GGTTTTATCCCGCAGGCTTAGTGCTGGTAT
*
26891749 TATATCCAGGTTTTATCCCGCAGGCTTCGTGCTGGTAT
1 TATATCC-GGTTTTATCCCGCAGGCTTAGTGCTGGTAT
* *
26891787 TATATCCGAGTTTTATCTCGCAGGCTTCGTGCTGGTAT
1 TATATCCG-GTTTTATCCCGCAGGCTTAGTGCTGGTAT
***
26891825 TATATCCGGGTTTTATCCTATAGGCTTAGTGCTGGTAT
1 TATATCC-GGTTTTATCCCGCAGGCTTAGTGCTGGTAT
** * *
26891863 TATATCCGAGTTAAATCCCACAGGCTTAGTGTTGGTAT
1 TATATCCG-GTTTTATCCCGCAGGCTTAGTGCTGGTAT
26891901 TATAT
1 TATAT
26891906 TCGAGCTTAA
Statistics
Matches: 139, Mismatches: 15, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
37 2 0.01
38 136 0.98
39 1 0.01
ACGTcount: A:0.20, C:0.19, G:0.23, T:0.37
Consensus pattern (37 bp):
TATATCCGGTTTTATCCCGCAGGCTTAGTGCTGGTAT
Found at i:26891837 original size:76 final size:76
Alignment explanation
Indices: 26891711--26891905 Score: 282
Period size: 76 Copynumber: 2.6 Consensus size: 76
26891701 ATATTTGATG
* *
26891711 TATATCCGGGTTAAATCCCGCAGGCTTAGTGCTGGTATTATATCCAGGTTTTATCCCGCAGGCTT
1 TATATCCGAGTTAAATCCCGCAGGCTTAGTGCTGGTATTATATCCAGGTTTTATCCCACAGGCTT
*
26891776 CGTGCTGGTAT
66 AGTGCTGGTAT
** * * * * *
26891787 TATATCCGAGTTTTATCTCGCAGGCTTCGTGCTGGTATTATATCCGGGTTTTATCCTATAGGCTT
1 TATATCCGAGTTAAATCCCGCAGGCTTAGTGCTGGTATTATATCCAGGTTTTATCCCACAGGCTT
26891852 AGTGCTGGTAT
66 AGTGCTGGTAT
* *
26891863 TATATCCGAGTTAAATCCCACAGGCTTAGTGTTGGTATTATAT
1 TATATCCGAGTTAAATCCCGCAGGCTTAGTGCTGGTATTATAT
26891906 TCGAGCTTAA
Statistics
Matches: 103, Mismatches: 16, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
76 103 1.00
ACGTcount: A:0.20, C:0.19, G:0.23, T:0.37
Consensus pattern (76 bp):
TATATCCGAGTTAAATCCCGCAGGCTTAGTGCTGGTATTATATCCAGGTTTTATCCCACAGGCTT
AGTGCTGGTAT
Found at i:26897057 original size:15 final size:16
Alignment explanation
Indices: 26897037--26897069 Score: 59
Period size: 15 Copynumber: 2.1 Consensus size: 16
26897027 AAATATATGG
26897037 TTAATGCTAGCCC-AA
1 TTAATGCTAGCCCGAA
26897052 TTAATGCTAGCCCGAA
1 TTAATGCTAGCCCGAA
26897068 TT
1 TT
26897070 CCCCGAATAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 13 0.76
16 4 0.24
ACGTcount: A:0.30, C:0.24, G:0.15, T:0.30
Consensus pattern (16 bp):
TTAATGCTAGCCCGAA
Found at i:26899179 original size:42 final size:42
Alignment explanation
Indices: 26899066--26899214 Score: 149
Period size: 42 Copynumber: 3.5 Consensus size: 42
26899056 TAAATTATCG
* * * *
26899066 TGTAAGGCCGTGTCTGGGACACAGGCATCGATTTGAAATTTACG
1 TGTAAGACCATGTCTGGGACACAGGCATCGATCTG-AATTT-CA
*
26899110 TGTAAAACCATGTCTGGGACATC-GGCATCGTATCTG-ATTTCA
1 TGTAAGACCATGTCTGGGACA-CAGGCATCG-ATCTGAATTTCA
* * * *
26899152 TATAAGACCCTGTCTGGGACAGAGGCATCGATACTGAATTACA
1 TGTAAGACCATGTCTGGGACACAGGCATCGAT-CTGAATTTCA
*
26899195 TGTAAGACCATATCTGGGAC
1 TGTAAGACCATGTCTGGGAC
26899215 GTTGGCATTA
Statistics
Matches: 87, Mismatches: 13, Indels: 11
0.78 0.12 0.10
Matches are distributed among these distances:
41 2 0.02
42 29 0.33
43 26 0.30
44 25 0.29
45 5 0.06
ACGTcount: A:0.28, C:0.20, G:0.25, T:0.27
Consensus pattern (42 bp):
TGTAAGACCATGTCTGGGACACAGGCATCGATCTGAATTTCA
Found at i:26904818 original size:17 final size:17
Alignment explanation
Indices: 26904798--26904837 Score: 71
Period size: 17 Copynumber: 2.4 Consensus size: 17
26904788 CAAAATCACA
26904798 AAATACACATAATTTGC
1 AAATACACATAATTTGC
26904815 AAATACACATAATTTGC
1 AAATACACATAATTTGC
*
26904832 ACATAC
1 AAATAC
26904838 TCATGCTTGG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.47, C:0.20, G:0.05, T:0.28
Consensus pattern (17 bp):
AAATACACATAATTTGC
Found at i:26908679 original size:8 final size:8
Alignment explanation
Indices: 26908653--26908692 Score: 53
Period size: 8 Copynumber: 5.0 Consensus size: 8
26908643 CTAGATCGGT
*
26908653 AAAAGCCA
1 AAAAGCCG
26908661 AAAAGCCG
1 AAAAGCCG
*
26908669 AAAAGCTG
1 AAAAGCCG
*
26908677 AAATGCCG
1 AAAAGCCG
26908685 AAAAGCCG
1 AAAAGCCG
26908693 GCATTTCGAG
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
8 27 1.00
ACGTcount: A:0.50, C:0.23, G:0.23, T:0.05
Consensus pattern (8 bp):
AAAAGCCG
Found at i:26912918 original size:20 final size:21
Alignment explanation
Indices: 26912875--26912920 Score: 62
Period size: 20 Copynumber: 2.3 Consensus size: 21
26912865 ACTGTTTTGT
26912875 TATGGG-CCAACTGTATTGAA
1 TATGGGCCCAACTGTATTGAA
*
26912895 -ATGGGCCCAACTGTGTT-AA
1 TATGGGCCCAACTGTATTGAA
26912914 TATGGGC
1 TATGGGC
26912921 AAGGCCCAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
19 7 0.30
20 16 0.70
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (21 bp):
TATGGGCCCAACTGTATTGAA
Found at i:26913013 original size:60 final size:61
Alignment explanation
Indices: 26912913--26913091 Score: 185
Period size: 60 Copynumber: 3.0 Consensus size: 61
26912903 AACTGTGTTA
* * * *
26912913 ATATGGGCAAGGCCCAATATA-TCTCGA-CTTGTAATAGGGCTACGGCCCAGATTGATACTG
1 ATATGGGCTAGGCCCAGTATACTCT-GATATTGTAATAGGGCTACGGCCCAGATTAATACTG
* * *
26912973 ATATGGGCTAGGCCCAGTATACTCTGATATTGTAA-GGGGCTATGGCCCAGATTAATATTG
1 ATATGGGCTAGGCCCAGTATACTCTGATATTGTAATAGGGCTACGGCCCAGATTAATACTG
*
26913033 ATATGGGCTAAGGCCCAGT-TAACTCTGAT-TTCTGAATAGGGCTTA-GGCCCAG--TAATACT
1 ATATGGGCT-AGGCCCAGTAT-ACTCTGATATTGT-AATAGGGC-TACGGCCCAGATTAATACT
26913092 TGAGCTGATT
Statistics
Matches: 102, Mismatches: 10, Indels: 14
0.81 0.08 0.11
Matches are distributed among these distances:
60 61 0.60
61 28 0.27
62 11 0.11
63 2 0.02
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.28
Consensus pattern (61 bp):
ATATGGGCTAGGCCCAGTATACTCTGATATTGTAATAGGGCTACGGCCCAGATTAATACTG
Found at i:26913040 original size:28 final size:27
Alignment explanation
Indices: 26912949--26913054 Score: 81
Period size: 28 Copynumber: 3.7 Consensus size: 27
26912939 ACTTGTAATA
* *
26912949 GGGCTACGGCCCAGATTGATACTGATAT
1 GGGCTA-GGCCCAGATTAATATTGATAT
* *
26912977 GGGCTAGGCCCAGTATACTCTGATATTG-TAAG
1 GGGCTAGGCCCAG---A-T-TAATATTGAT-AT
26913009 GGGCTATGGCCCAGATTAATATTGATAT
1 GGGCTA-GGCCCAGATTAATATTGATAT
26913037 GGGCTAAGGCCCAG-TTAA
1 GGGCT-AGGCCCAGATTAA
26913055 CTCTGATTTC
Statistics
Matches: 65, Mismatches: 4, Indels: 19
0.74 0.05 0.22
Matches are distributed among these distances:
27 11 0.17
28 26 0.40
29 3 0.05
30 2 0.03
31 2 0.03
32 14 0.22
33 7 0.11
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (27 bp):
GGGCTAGGCCCAGATTAATATTGATAT
Found at i:26913692 original size:17 final size:17
Alignment explanation
Indices: 26913670--26913703 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
26913660 AATCTATAAT
26913670 GAAGATATCCTTTAAAC
1 GAAGATATCCTTTAAAC
*
26913687 GAAGATATTCTTTAAAC
1 GAAGATATCCTTTAAAC
26913704 ACTAAGAAAG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.41, C:0.15, G:0.12, T:0.32
Consensus pattern (17 bp):
GAAGATATCCTTTAAAC
Found at i:26918444 original size:56 final size:56
Alignment explanation
Indices: 26918384--26918509 Score: 162
Period size: 56 Copynumber: 2.2 Consensus size: 56
26918374 CCCAGACAGG
* * *
26918384 GTCTTACTCACACACATATAACGGAGTCACATATTGATGCCAACATATTAAACACA
1 GTCTTACTCGCACACATATAACGAAGTCACATATCGATGCCAACATATTAAACACA
* * * * * **
26918440 GTCTTAGTCGTACACATATATCGAATTCACATATCGATGCCAACGTATTAAACATG
1 GTCTTACTCGCACACATATAACGAAGTCACATATCGATGCCAACATATTAAACACA
26918496 GTCTTACTCGCACA
1 GTCTTACTCGCACA
26918510 TCACATATTG
Statistics
Matches: 58, Mismatches: 12, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
56 58 1.00
ACGTcount: A:0.35, C:0.25, G:0.13, T:0.28
Consensus pattern (56 bp):
GTCTTACTCGCACACATATAACGAAGTCACATATCGATGCCAACATATTAAACACA
Found at i:26919662 original size:14 final size:15
Alignment explanation
Indices: 26919645--26919673 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
26919635 TCACGAAAAT
26919645 TTCACACAT-ATAAA
1 TTCACACATAATAAA
26919659 TTCACACATAATAAA
1 TTCACACATAATAAA
26919674 CACATAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.52, C:0.21, G:0.00, T:0.28
Consensus pattern (15 bp):
TTCACACATAATAAA
Found at i:26922240 original size:39 final size:40
Alignment explanation
Indices: 26922132--26922316 Score: 209
Period size: 40 Copynumber: 4.7 Consensus size: 40
26922122 TCGAATGATG
* * *
26922132 TCCGGGCTAAGTCCTGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
* *
26922171 ATCCGGACTAAGAT-CTGAAGGCATTTGTGCGAGTTACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
26922212 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
*
26922251 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
26922290 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
26922317 AACGAGTAGC
Statistics
Matches: 126, Mismatches: 13, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
39 35 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:26922338 original size:79 final size:79
Alignment explanation
Indices: 26922187--26922349 Score: 206
Period size: 79 Copynumber: 2.1 Consensus size: 79
26922177 ACTAAGATCT
* **
26922187 GAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAAT
1 GAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAAAT
*
26922252 CCGGGTTAAGTCCC
66 CCGGGTTAAATCCC
* *
26922266 GAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTA
1 GAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-CTA
* *
26922329 TATCC-GGTTAAATTCC
63 AATCCGGGTTAAATCCC
26922345 GAAGG
1 GAAGG
26922350 TACGTGATTC
Statistics
Matches: 73, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
78 2 0.03
79 47 0.64
80 24 0.33
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (79 bp):
GAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAAAT
CCGGGTTAAATCCC
Found at i:26937625 original size:27 final size:27
Alignment explanation
Indices: 26937595--26937770 Score: 187
Period size: 27 Copynumber: 6.6 Consensus size: 27
26937585 ATATTGAGTC
* * *
26937595 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAAAT
*
26937622 CGCACACTTAGTGCTAC-GAATCAAAT
1 CGCACACTTAGTGCTACATAATCAAAT
*
26937648 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATCAAA-T
** ** *
26937676 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAAAT
**
26937703 CGCACACTTAGTGC-ATCAT-ATCATTT
1 CGCACACTTAGTGCTA-CATAATCAAAT
* *
26937729 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAATCAAAT
26937756 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
26937771 GTACAATTTA
Statistics
Matches: 127, Mismatches: 17, Indels: 10
0.82 0.11 0.06
Matches are distributed among these distances:
26 46 0.36
27 58 0.46
28 23 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAAAT
Found at i:26937732 original size:81 final size:80
Alignment explanation
Indices: 26937616--26937769 Score: 231
Period size: 81 Copynumber: 1.9 Consensus size: 80
26937606 TGCTATATAA
*
26937616 TCAACTCGCACACTTAGTGCTACGAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCAC
1 TCAACTCGCACACTTAGTGCTACGAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCAC
26937681 ACTTAGTGCCGCATGG
65 ACTTAGTGCCGCATGG
* **
26937697 TCAATTCGCACACTTAGTGC-ATC-ATATCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CGA-ATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
26937760 CACTTAGTGC
64 CACTTAGTGC
26937770 TGTACAATTT
Statistics
Matches: 67, Mismatches: 4, Indels: 5
0.88 0.05 0.07
Matches are distributed among these distances:
80 17 0.25
81 50 0.75
ACGTcount: A:0.30, C:0.29, G:0.16, T:0.26
Consensus pattern (80 bp):
TCAACTCGCACACTTAGTGCTACGAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCACA
CTTAGTGCCGCATGG
Found at i:26937753 original size:53 final size:53
Alignment explanation
Indices: 26937595--26937769 Score: 196
Period size: 53 Copynumber: 3.3 Consensus size: 53
26937585 ATATTGAGTC
* *
26937595 CGCACACTCAGTGCTAT-ATAATCAACTCGCACACTTAGTGCTACGA-A-TCAAAT
1 CGCACACTTAGTGC-ATCAT-ATCAACTCGCACACTTAGTGCAAC-ATAGTCAAAT
** * *
26937648 CGCACACTTAGTGC-TACATAGTCAAACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCAT-CATA-TC-AACTCGCACACTTAGTGCAACATAGTCAAAT
**
26937703 CGCACACTTAGTGCATCATATCATTTCGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCATCATATCAACTCGCACACTTAGTGCAACATAGTCAAAT
26937756 CGCACACTTAGTGC
1 CGCACACTTAGTGC
26937770 TGTACAATTT
Statistics
Matches: 104, Mismatches: 11, Indels: 14
0.81 0.09 0.11
Matches are distributed among these distances:
51 1 0.01
52 1 0.01
53 57 0.55
54 21 0.20
55 23 0.22
56 1 0.01
ACGTcount: A:0.30, C:0.29, G:0.15, T:0.26
Consensus pattern (53 bp):
CGCACACTTAGTGCATCATATCAACTCGCACACTTAGTGCAACATAGTCAAAT
Found at i:26945720 original size:27 final size:27
Alignment explanation
Indices: 26945690--26945867 Score: 198
Period size: 27 Copynumber: 6.6 Consensus size: 27
26945680 ATATTGAGTC
* * * *
26945690 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
*
26945717 CGCACACTTAGTGCTACGA-AATCAAAT
1 CGCACACTTAGTGCTAC-ATAGTCAAAT
26945744 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
26945772 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
26945799 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
26945826 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
26945853 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
26945868 GTACAATTTA
Statistics
Matches: 130, Mismatches: 16, Indels: 10
0.83 0.10 0.06
Matches are distributed among these distances:
26 1 0.01
27 104 0.80
28 25 0.19
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:26946367 original size:12 final size:12
Alignment explanation
Indices: 26946350--26946376 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
26946340 ATGGCATACT
26946350 TATGTATATATA
1 TATGTATATATA
26946362 TATGTATATATA
1 TATGTATATATA
26946374 TAT
1 TAT
26946377 ATACTTCGGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.41, C:0.00, G:0.07, T:0.52
Consensus pattern (12 bp):
TATGTATATATA
Found at i:26951081 original size:12 final size:12
Alignment explanation
Indices: 26951064--26951089 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
26951054 ATAGAGTTAC
26951064 GATACCAGTGAT
1 GATACCAGTGAT
26951076 GATACCAGTGAT
1 GATACCAGTGAT
26951088 GA
1 GA
26951090 ACATTAAGCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.35, C:0.15, G:0.27, T:0.23
Consensus pattern (12 bp):
GATACCAGTGAT
Found at i:26959699 original size:93 final size:93
Alignment explanation
Indices: 26959587--26959759 Score: 283
Period size: 93 Copynumber: 1.9 Consensus size: 93
26959577 CGCCCATAAG
* *
26959587 TGAACTCGGACTCAACTCAACGAGCTAGGGCGTTCGCATCCATAAGTGAACTCAGACTCAACTCA
1 TGAACTCGGACTCAACTCAACGAGCTAGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCA
26959652 ACGAGCTCGGATGCCTAGTTACATCTCT
66 ACGAGCTCGGATGCCTAGTTACATCTCT
* * * *
26959680 TGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCA
1 TGAACTCGGACTCAACTCAACGAGCTAGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCA
*
26959745 ACGAGTTCGGATGCC
66 ACGAGCTCGGATGCC
26959760 CAAATATCCT
Statistics
Matches: 73, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (93 bp):
TGAACTCGGACTCAACTCAACGAGCTAGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCA
ACGAGCTCGGATGCCTAGTTACATCTCT
Found at i:26959755 original size:46 final size:46
Alignment explanation
Indices: 26959580--26959755 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
26959570 TGTAACCCGC
* * * *
26959580 CCATAAGTGAACTCGGACTCAACTCAACGAGCTAGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTTGCAT
* * *
26959626 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA---C-ATTTGCAT
*
26959676 CTC-T---TGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
1 C-CATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTTGCAT
*
26959719 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
26959756 TGCCCAAATA
Statistics
Matches: 110, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 1 0.01
43 8 0.07
44 1 0.01
46 64 0.58
47 28 0.25
49 1 0.01
50 6 0.05
51 1 0.01
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTTGCAT
Found at i:26959774 original size:46 final size:46
Alignment explanation
Indices: 26959631--26959774 Score: 129
Period size: 46 Copynumber: 3.1 Consensus size: 46
26959621 CGCATCCATA
* * * *
26959631 AGTGAACTCAGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCA--TATATC-CT
*
26959680 --TGAACTCGGACTCAACTCAACGAGTTCGGA----CATTTGCATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCATAT--ATCC-T
*
26959723 AAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATATCCT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCATATATCCT
26959770 AGTGA
1 AGTGA
26959775 CATGTCACTT
Statistics
Matches: 78, Mismatches: 7, Indels: 23
0.72 0.06 0.21
Matches are distributed among these distances:
41 1 0.01
42 1 0.01
43 5 0.06
46 35 0.45
47 29 0.37
48 4 0.05
50 3 0.04
ACGTcount: A:0.30, C:0.27, G:0.19, T:0.24
Consensus pattern (46 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCATATATCCT
Found at i:26970133 original size:11 final size:10
Alignment explanation
Indices: 26970110--26970152 Score: 50
Period size: 10 Copynumber: 4.2 Consensus size: 10
26970100 GTACATCTGC
*
26970110 TCTTTTTTGT
1 TCTTTTTTTT
26970120 TCTTTTTGTTT
1 TCTTTTT-TTT
*
26970131 TCTTTTGTTT
1 TCTTTTTTTT
*
26970141 TCCTTTTTTT
1 TCTTTTTTTT
26970151 TC
1 TC
26970153 ATGAGCATTT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
10 20 0.71
11 8 0.29
ACGTcount: A:0.00, C:0.14, G:0.07, T:0.79
Consensus pattern (10 bp):
TCTTTTTTTT
Found at i:26970134 original size:21 final size:20
Alignment explanation
Indices: 26970110--26970152 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 20
26970100 GTACATCTGC
*
26970110 TCTTTT-TTGTTCTTTTTGTTT
1 TCTTTTGTT-TTCCTTTT-TTT
26970131 TCTTTTGTTTTCCTTTTTTT
1 TCTTTTGTTTTCCTTTTTTT
26970151 TC
1 TC
26970153 ATGAGCATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
20 5 0.25
21 13 0.65
22 2 0.10
ACGTcount: A:0.00, C:0.14, G:0.07, T:0.79
Consensus pattern (20 bp):
TCTTTTGTTTTCCTTTTTTT
Found at i:26972827 original size:20 final size:20
Alignment explanation
Indices: 26972790--26972827 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
26972780 GAACTTCCTC
*
26972790 TCTCTCTTGAGCTACAACAG
1 TCTCTCTTGAACTACAACAG
26972810 TCTCATCTTGAACT-CAAC
1 TCTC-TCTTGAACTACAAC
26972828 CATCTTGGGT
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
20 8 0.50
21 8 0.50
ACGTcount: A:0.26, C:0.32, G:0.11, T:0.32
Consensus pattern (20 bp):
TCTCTCTTGAACTACAACAG
Found at i:26982475 original size:127 final size:127
Alignment explanation
Indices: 26982249--26982503 Score: 510
Period size: 127 Copynumber: 2.0 Consensus size: 127
26982239 CTCACATATA
26982249 TGACATAGGCATTTTCACCTATGCTTCTCATTTCACACTCATGATTCAATTCCAATCGATCTAAC
1 TGACATAGGCATTTTCACCTATGCTTCTCATTTCACACTCATGATTCAATTCCAATCGATCTAAC
26982314 ATGCATAAGAATATATCACATACCTGGCCAACTTAATGCATTGAACAAATTCAATTGCCGAT
66 ATGCATAAGAATATATCACATACCTGGCCAACTTAATGCATTGAACAAATTCAATTGCCGAT
26982376 TGACATAGGCATTTTCACCTATGCTTCTCATTTCACACTCATGATTCAATTCCAATCGATCTAAC
1 TGACATAGGCATTTTCACCTATGCTTCTCATTTCACACTCATGATTCAATTCCAATCGATCTAAC
26982441 ATGCATAAGAATATATCACATACCTGGCCAACTTAATGCATTGAACAAATTCAATTGCCGAT
66 ATGCATAAGAATATATCACATACCTGGCCAACTTAATGCATTGAACAAATTCAATTGCCGAT
26982503 T
1 T
26982504 TAACACAAGG
Statistics
Matches: 128, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
127 128 1.00
ACGTcount: A:0.33, C:0.24, G:0.11, T:0.32
Consensus pattern (127 bp):
TGACATAGGCATTTTCACCTATGCTTCTCATTTCACACTCATGATTCAATTCCAATCGATCTAAC
ATGCATAAGAATATATCACATACCTGGCCAACTTAATGCATTGAACAAATTCAATTGCCGAT
Found at i:26982758 original size:26 final size:26
Alignment explanation
Indices: 26982729--26982788 Score: 75
Period size: 28 Copynumber: 2.2 Consensus size: 26
26982719 TCCCTTTGAA
* * *
26982729 TCATTCGATATTTTGCACACTAAGTG
1 TCATTCAATATCTCGCACACTAAGTG
26982755 TCATTCTCAATATCTCGCACACTAAGTG
1 TCA-T-TCAATATCTCGCACACTAAGTG
26982783 TCATTC
1 TCATTC
26982789 TCAATATTTC
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
26 5 0.17
27 2 0.07
28 22 0.76
ACGTcount: A:0.27, C:0.25, G:0.12, T:0.37
Consensus pattern (26 bp):
TCATTCAATATCTCGCACACTAAGTG
Found at i:26982774 original size:28 final size:28
Alignment explanation
Indices: 26982743--26982805 Score: 108
Period size: 28 Copynumber: 2.2 Consensus size: 28
26982733 TCGATATTTT
26982743 GCACACTAAGTGTCATTCTCAATATCTC
1 GCACACTAAGTGTCATTCTCAATATCTC
*
26982771 GCACACTAAGTGTCATTCTCAATATTTC
1 GCACACTAAGTGTCATTCTCAATATCTC
*
26982799 GTACACT
1 GCACACT
26982806 GAGTACCATA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 33 1.00
ACGTcount: A:0.29, C:0.27, G:0.11, T:0.33
Consensus pattern (28 bp):
GCACACTAAGTGTCATTCTCAATATCTC
Found at i:26985634 original size:49 final size:49
Alignment explanation
Indices: 26985562--26985657 Score: 183
Period size: 49 Copynumber: 2.0 Consensus size: 49
26985552 ATTTGTGTTC
*
26985562 TGAGAAATCCAAAATTAATTCAAATGATTCTGAGTGAAGCTCACAGTTT
1 TGAGAAATCCAAAATTAATTCAAATGATTCTAAGTGAAGCTCACAGTTT
26985611 TGAGAAATCCAAAATTAATTCAAATGATTCTAAGTGAAGCTCACAGT
1 TGAGAAATCCAAAATTAATTCAAATGATTCTAAGTGAAGCTCACAGT
26985658 AGTCGTTTAT
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 46 1.00
ACGTcount: A:0.41, C:0.15, G:0.16, T:0.29
Consensus pattern (49 bp):
TGAGAAATCCAAAATTAATTCAAATGATTCTAAGTGAAGCTCACAGTTT
Found at i:27001793 original size:44 final size:44
Alignment explanation
Indices: 27001721--27001808 Score: 113
Period size: 44 Copynumber: 2.0 Consensus size: 44
27001711 ATTACATGTA
* * * *
27001721 TCGCATCCATTATGAACTCTGACCAACTCCACGAGTTCGAATGC
1 TCGCATCCATAATGAACCCAGACCAACTCAACGAGTTCGAATGC
* * *
27001765 TCGCATCCATAATGAACCCAGACTAACTCAATGAGTTCGGATGC
1 TCGCATCCATAATGAACCCAGACCAACTCAACGAGTTCGAATGC
27001809 CTCATATATA
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
44 37 1.00
ACGTcount: A:0.30, C:0.30, G:0.17, T:0.24
Consensus pattern (44 bp):
TCGCATCCATAATGAACCCAGACCAACTCAACGAGTTCGAATGC
Found at i:27003935 original size:39 final size:40
Alignment explanation
Indices: 27003725--27003955 Score: 295
Period size: 40 Copynumber: 5.8 Consensus size: 40
27003715 GGATATAACT
* * * *
27003725 ACTCGCTCAGATGCCTTCGGGACATAGCCCGG-TTAGAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATT-TAGTA
* *
27003765 ACTCGCACAATTGCCTTCGGGACTTAGCCCGAATTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
27003805 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
* *
27003845 ATTCGCACAAATGCCTTCGGGACTTAGCCCGGGTTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
* * * *
27003885 ACTCGCCCAGATGCCTTTGGGACTTAGCCCGGA-TTAGTC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
* ** *
27003924 ACTAGTGCAGATGCCTTCGGGACTTAGCCCGG
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG
27003956 TTTTCATCCA
Statistics
Matches: 170, Mismatches: 20, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
39 33 0.19
40 135 0.79
41 2 0.01
ACGTcount: A:0.22, C:0.28, G:0.25, T:0.25
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
Found at i:27007557 original size:18 final size:18
Alignment explanation
Indices: 27007534--27007570 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
27007524 GTTTTATGTC
* *
27007534 TGTTTATTTTTGTTTTTA
1 TGTTTATTTGTGTGTTTA
27007552 TGTTTATTTGTGTGTTTA
1 TGTTTATTTGTGTGTTTA
27007570 T
1 T
27007571 TTTTTATTCA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.11, C:0.00, G:0.16, T:0.73
Consensus pattern (18 bp):
TGTTTATTTGTGTGTTTA
Found at i:27009650 original size:43 final size:44
Alignment explanation
Indices: 27009592--27009742 Score: 182
Period size: 43 Copynumber: 3.5 Consensus size: 44
27009582 GATTGCTGAG
* *
27009592 ATGTGAATACATGTAAGACCATGTCTGGGACATTGGCATTGTAT
1 ATGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTAT
* * *
27009636 -TGTGATTACGTGTAAGACCATGTTTTGGACATTGGCATCGT-T
1 ATGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTAT
* * * *
27009678 ATATGATTTCGTGTAAGACCATGTCTGGGACATTGGCAACG-AT
1 ATGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTAT
* *
27009721 GTGTGATAACATGTAAGACCAT
1 ATGTGATTACATGTAAGACCAT
27009743 TTTGGGATAT
Statistics
Matches: 90, Mismatches: 15, Indels: 5
0.82 0.14 0.05
Matches are distributed among these distances:
42 1 0.01
43 89 0.99
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.32
Consensus pattern (44 bp):
ATGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTAT
Found at i:27012495 original size:10 final size:10
Alignment explanation
Indices: 27012467--27012496 Score: 51
Period size: 11 Copynumber: 2.9 Consensus size: 10
27012457 TAGTTTTAAG
27012467 TTTAGTTTTC
1 TTTAGTTTTC
27012477 TTTAGGTTTTC
1 TTTA-GTTTTC
27012488 TTTAGTTTT
1 TTTAGTTTT
27012497 TCTCTGCACT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
10 9 0.47
11 10 0.53
ACGTcount: A:0.10, C:0.07, G:0.13, T:0.70
Consensus pattern (10 bp):
TTTAGTTTTC
Found at i:27012991 original size:183 final size:181
Alignment explanation
Indices: 27012685--27013040 Score: 559
Period size: 183 Copynumber: 2.0 Consensus size: 181
27012675 TAGTTAAATT
* *
27012685 TATTTCAGTTTATTTTACTTCAAATGTGTTAAAGCTTGTTCCTTTTATGTTTCTTGCTTTAGATT
1 TATTTCAGTTTATTTTACGTCAAATATGTTAAAGCTTGTTCCTTTTATGTTTCTTGCTTTAGATT
*
27012750 TCTTTGTTAAATGCTTTTGGTTTCATGTTATTTAAGTTTTAGTGCTTAAAAATCTCAACTTTCAC
66 TCTTTGTTAAATGCTTTTGGTTTCATGTTATTTAAGTTTTAGTGCATAAAAATCTCAACTTTCAC
*
27012815 ATTTTTCGTAAGCTTTACTTTCATAGCTTCTTTGTTTCCTATTTTTGTATG
131 ATTTTTCGTAACCTTTACTTTCATAGCTTCTTTGTTTCCTATTTTTGTATG
* ** * * *
27012866 TATTTCAGTTTATTTTAGGTCAAATATGTTAAATTTTGTTCCTTTTATGTTTTTTTTTCTTTATA
1 TATTTCAGTTTATTTTACGTCAAATATGTTAAAGCTTGTTCCTTTTATG--TTTCTTGCTTTAGA
** *
27012931 TTTCTTTGTTAAATGCTTTTGGTTTCATGTTATTTAAGTTTTCTTGCATAAAAGTCTCAACTTTC
64 TTTCTTTGTTAAATGCTTTTGGTTTCATGTTATTTAAGTTTTAGTGCATAAAAATCTCAACTTTC
* *
27012996 ACATTTTTCTTAACCTTTACTTTCATGGCTTCTTTGTTTCCTATT
129 ACATTTTTCGTAACCTTTACTTTCATAGCTTCTTTGTTTCCTATT
27013041 GTTTTGTTTA
Statistics
Matches: 158, Mismatches: 15, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
181 44 0.28
183 114 0.72
ACGTcount: A:0.20, C:0.14, G:0.11, T:0.55
Consensus pattern (181 bp):
TATTTCAGTTTATTTTACGTCAAATATGTTAAAGCTTGTTCCTTTTATGTTTCTTGCTTTAGATT
TCTTTGTTAAATGCTTTTGGTTTCATGTTATTTAAGTTTTAGTGCATAAAAATCTCAACTTTCAC
ATTTTTCGTAACCTTTACTTTCATAGCTTCTTTGTTTCCTATTTTTGTATG
Found at i:27016227 original size:47 final size:47
Alignment explanation
Indices: 27016173--27017149 Score: 1639
Period size: 47 Copynumber: 20.6 Consensus size: 47
27016163 TATTTGAATA
27016173 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
27016220 AATGTGAAAGAGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTG-AA-AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
27016269 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
27016316 AATGTGAAAGTGTATATATAAGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATAT--GTGATAAGGCCTAATGGCCGATGTGATG
* *
27016365 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
27016412 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
27016461 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
27016508 AATGTGAAAGTGTATATATGTGATAAGGCCTAGTGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
27016555 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
27016602 AATGTGAAAGTGTATATATTTGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATA--TGTGATAAGGCCTAATGGCCGATGTGATG
* * * *
27016651 AATCTGAAAATGTATATATGTGATAAGGCCTAATAGCCGATGTGATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
27016698 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
27016745 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
27016792 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
27016841 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
27016888 AATGTGAAAGTGTATATATGTGATAAGGTCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
27016935 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
27016982 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
27017029 AATGTGAAAGTGGATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * * *
27017076 AATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
27017123 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
27017150 TCCCGAAGGG
Statistics
Matches: 876, Mismatches: 44, Indels: 20
0.93 0.05 0.02
Matches are distributed among these distances:
47 649 0.74
48 4 0.00
49 223 0.25
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:27016574 original size:190 final size:190
Alignment explanation
Indices: 27016173--27017149 Score: 1688
Period size: 190 Copynumber: 5.1 Consensus size: 190
27016163 TATTTGAATA
*
27016173 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGAGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
*
27016238 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAAT
66 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
*
27016303 GGCCAATGTGATGAATGTGAAAGTGTATATATAAGTGATAAGGCCTAATGGCCGATGTGATG
131 GGCCGATGTGATGAATGTGAAAGTGTATATAT--GTGATAAGGCCTAATGGCCGATGTGATG
* *
27016365 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
27016430 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
66 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
* *
27016495 AGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAGTGGCCGATGTGATG
131 GGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
27016555 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
* * *
27016620 TTTGTGATAAGGCCTAATGGCCGATGTGATGAATCTGAAAATGTATATATGTGATAAGGCCTAAT
66 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
* *
27016685 AGCCGATGTGATAAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
131 GGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
27016745 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
27016810 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
66 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
* *
27016875 GGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGTCTAATAGCCGATGTGATG
131 GGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
27016935 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
*
27016998 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGGATATATGTGATAAGGCCTAAT
66 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
* * * * * *
27017063 GGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATG
131 GGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
27017123 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
27017150 TCCCGAAGGG
Statistics
Matches: 749, Mismatches: 36, Indels: 4
0.95 0.05 0.01
Matches are distributed among these distances:
188 145 0.19
190 448 0.60
192 156 0.21
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.29
Consensus pattern (190 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
GGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:27017027 original size:22 final size:22
Alignment explanation
Indices: 27016999--27017074 Score: 62
Period size: 22 Copynumber: 3.3 Consensus size: 22
27016989 AAGTGTATAT
27016999 ATGTGATAAGGCCTAATGGCCG
1 ATGTGATAAGGCCTAATGGCCG
* *** ***
27017021 ATGTGATGAATGTGAAAGTGGATAT
1 ATGTGAT-AAGGCCTAA-TGG-CCG
27017046 ATGTGATAAGGCCTAATGGCCG
1 ATGTGATAAGGCCTAATGGCCG
27017068 ATGTGAT
1 ATGTGAT
27017075 GAATGTGAAA
Statistics
Matches: 37, Mismatches: 14, Indels: 6
0.65 0.25 0.11
Matches are distributed among these distances:
22 14 0.38
23 8 0.22
24 8 0.22
25 7 0.19
ACGTcount: A:0.30, C:0.11, G:0.32, T:0.28
Consensus pattern (22 bp):
ATGTGATAAGGCCTAATGGCCG
Found at i:27018657 original size:40 final size:40
Alignment explanation
Indices: 27018603--27019125 Score: 762
Period size: 40 Copynumber: 13.1 Consensus size: 40
27018593 AGAATTGAGA
*
27018603 GTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTA
1 GTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTG
* * *
27018643 GTGATATATTCGGGCTAAGTCCCGAGGAGCATTCGTGCTA
1 GTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTG
* *
27018683 GTGATGTATCCGGGCTAAGTCCCGAGGAGCATTCGTGCTG
1 GTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTG
* * *
27018723 GTGTTATATCCGGGCTAAGTCCCGAAGAGCATTCGAGTTG
1 GTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTG
* * *
27018763 GTGTTATATCCGGGCTAAGTCCCGAAGAGTATTCGTGCTA
1 GTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTG
* *
27018803 GTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCTA
1 GTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTG
* *
27018843 GTGATGTATCCGGGCTAAGTCCCGAGGAGCATTCGTGCTG
1 GTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTG
* * *
27018883 GTGTTATATCCGGGCTAAGTCCCGAAGAGCATTCGAGTTG
1 GTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTG
* * *
27018923 GTGTTATATCCGGGCTAAGTCTCGAAGAGCATTCGTGCTA
1 GTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTG
27018963 GTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTG
1 GTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTG
* * *
27019003 GTGTTATATCCGGGCTAGGTCCCGAAGAGCATTCGAGCTG
1 GTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTG
* * *
27019043 GTGTTATATCCGGGCTAGGTCCCGAAGAGCATTCGAGCTG
1 GTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTG
* *
27019083 GTG-T-TATCCGGGCTAAGTCTCGAAGAGCATTCATGCTG
1 GTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTG
27019121 GTGAT
1 GTGAT
27019126 GTGTATTCGG
Statistics
Matches: 444, Mismatches: 38, Indels: 3
0.92 0.08 0.01
Matches are distributed among these distances:
38 33 0.07
39 2 0.00
40 409 0.92
ACGTcount: A:0.21, C:0.21, G:0.31, T:0.27
Consensus pattern (40 bp):
GTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTG
Found at i:27018682 original size:23 final size:23
Alignment explanation
Indices: 27018650--27018717 Score: 58
Period size: 23 Copynumber: 3.2 Consensus size: 23
27018640 CTAGTGATAT
27018650 ATTCGGGCTAAGTCCCGAGGAGC
1 ATTCGGGCTAAGTCCCGAGGAGC
* * *
27018673 ATTCGTGCT-AGT---GA--TGT
1 ATTCGGGCTAAGTCCCGAGGAGC
*
27018690 ATCCGGGCTAAGTCCCGAGGAGC
1 ATTCGGGCTAAGTCCCGAGGAGC
27018713 ATTCG
1 ATTCG
27018718 TGCTGGTGTT
Statistics
Matches: 31, Mismatches: 8, Indels: 12
0.61 0.16 0.24
Matches are distributed among these distances:
17 8 0.26
18 3 0.10
19 2 0.06
21 2 0.06
22 3 0.10
23 13 0.42
ACGTcount: A:0.21, C:0.24, G:0.32, T:0.24
Consensus pattern (23 bp):
ATTCGGGCTAAGTCCCGAGGAGC
Found at i:27019147 original size:8 final size:8
Alignment explanation
Indices: 27019134--27019160 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
27019124 ATGTGTATTC
27019134 GGCCATTA
1 GGCCATTA
27019142 GGCCATTA
1 GGCCATTA
27019150 GGCCATTA
1 GGCCATTA
27019158 GGC
1 GGC
27019161 TGAAGTAATC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.22, C:0.26, G:0.30, T:0.22
Consensus pattern (8 bp):
GGCCATTA
Found at i:27020347 original size:47 final size:47
Alignment explanation
Indices: 27020278--27020421 Score: 216
Period size: 47 Copynumber: 3.1 Consensus size: 47
27020268 GTTTGTATCA
27020278 AAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAT
1 AAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAT
*
27020325 AAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAC
1 AAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAT
* * * * * * *
27020372 AGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGAT
1 AAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAT
27020419 AAG
1 AAG
27020422 TCCCGAAGGG
Statistics
Matches: 87, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 87 1.00
ACGTcount: A:0.32, C:0.10, G:0.32, T:0.26
Consensus pattern (47 bp):
AAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAT
Found at i:27022821 original size:18 final size:18
Alignment explanation
Indices: 27022798--27022841 Score: 88
Period size: 18 Copynumber: 2.4 Consensus size: 18
27022788 AAACACACGG
27022798 AGTAAGCTTTGAAAGCTT
1 AGTAAGCTTTGAAAGCTT
27022816 AGTAAGCTTTGAAAGCTT
1 AGTAAGCTTTGAAAGCTT
27022834 AGTAAGCT
1 AGTAAGCT
27022842 CGTATCTTAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.34, C:0.11, G:0.23, T:0.32
Consensus pattern (18 bp):
AGTAAGCTTTGAAAGCTT
Found at i:27022840 original size:9 final size:9
Alignment explanation
Indices: 27022798--27022841 Score: 52
Period size: 9 Copynumber: 4.9 Consensus size: 9
27022788 AAACACACGG
27022798 AGTAAGCTT
1 AGTAAGCTT
* *
27022807 TGAAAGCTT
1 AGTAAGCTT
27022816 AGTAAGCTT
1 AGTAAGCTT
* *
27022825 TGAAAGCTT
1 AGTAAGCTT
27022834 AGTAAGCT
1 AGTAAGCT
27022842 CGTATCTTAA
Statistics
Matches: 27, Mismatches: 8, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
9 27 1.00
ACGTcount: A:0.34, C:0.11, G:0.23, T:0.32
Consensus pattern (9 bp):
AGTAAGCTT
Found at i:27028637 original size:27 final size:28
Alignment explanation
Indices: 27028600--27028813 Score: 268
Period size: 27 Copynumber: 8.0 Consensus size: 28
27028590 AAACATACAT
* **
27028600 CACATAGGGGCAAAA-CAGTCATTTTGC
1 CACATAAGGGCAAAATCAGTCATTTTAA
*
27028627 CACATAAGGGCAAAATC-GTCATTTTAT
1 CACATAAGGGCAAAATCAGTCATTTTAA
* *
27028654 CATATAAGGG-AAAATC-GTTATTTTAA
1 CACATAAGGGCAAAATCAGTCATTTTAA
*
27028680 CACATAAGGGCAAAATCA-TCAATTTAA
1 CACATAAGGGCAAAATCAGTCATTTTAA
*
27028707 CACATAAGGGCAAAAT-AGTCATTTTAC
1 CACATAAGGGCAAAATCAGTCATTTTAA
*
27028734 CACATAAGGGCAAAA-CTA-TCATTTTAT
1 CACATAAGGGCAAAATC-AGTCATTTTAA
27028761 CACATAAGGGCAAAATC-GTCATTTTAA
1 CACATAAGGGCAAAATCAGTCATTTTAA
27028788 CACATAAGGGCAAAAT-AGTCATTTTA
1 CACATAAGGGCAAAATCAGTCATTTTA
27028814 CCCTATAGGG
Statistics
Matches: 165, Mismatches: 13, Indels: 18
0.84 0.07 0.09
Matches are distributed among these distances:
26 24 0.15
27 138 0.84
28 3 0.02
ACGTcount: A:0.41, C:0.17, G:0.15, T:0.27
Consensus pattern (28 bp):
CACATAAGGGCAAAATCAGTCATTTTAA
Found at i:27028791 original size:81 final size:80
Alignment explanation
Indices: 27028598--27028815 Score: 298
Period size: 81 Copynumber: 2.7 Consensus size: 80
27028588 ATAAACATAC
* ** * * *
27028598 ATCACATAGGGGCAAAA-CAGTCATTTTGCCACATAAGGGCAAAATCGTCATTTTATCATATAAG
1 ATCACATAAGGGCAAAATC-GTCATTTTAACACATAAGGGCAAAATAGTCATTTTACCACATAAG
27028662 GGAAAATCGTTATTTT
65 GGAAAATCGTTATTTT
* * *
27028678 AACACATAAGGGCAAAATCATCAATTTAACACATAAGGGCAAAATAGTCATTTTACCACATAAGG
1 ATCACATAAGGGCAAAATCGTCATTTTAACACATAAGGGCAAAATAGTCATTTTACCACATAAGG
27028743 GCAAAA-C-TATCATTTT
66 G-AAAATCGT-T-ATTTT
27028759 ATCACATAAGGGCAAAATCGTCATTTTAACACATAAGGGCAAAATAGTCATTTTACC
1 ATCACATAAGGGCAAAATCGTCATTTTAACACATAAGGGCAAAATAGTCATTTTACC
27028816 CTATAGGGGT
Statistics
Matches: 122, Mismatches: 12, Indels: 7
0.87 0.09 0.05
Matches are distributed among these distances:
79 1 0.01
80 57 0.47
81 64 0.52
ACGTcount: A:0.40, C:0.18, G:0.15, T:0.27
Consensus pattern (80 bp):
ATCACATAAGGGCAAAATCGTCATTTTAACACATAAGGGCAAAATAGTCATTTTACCACATAAGG
GAAAATCGTTATTTT
Found at i:27028835 original size:27 final size:26
Alignment explanation
Indices: 27028805--27029122 Score: 365
Period size: 27 Copynumber: 11.9 Consensus size: 26
27028795 GGGCAAAATA
*
27028805 GTCATTTTACCCTATAGGGGTATTTCG
1 GTCATCTTACCCTAT-GGGGTATTTCG
* *
27028832 GTCATTTTACCCTATAGGGGTATTTCA
1 GTCATCTTACCCTAT-GGGGTATTTCG
27028859 GTCATCTTACCCTATGGGGGTATTTCG
1 GTCATCTTACCCTAT-GGGGTATTTCG
27028886 GTCAT-TGTACCCTATGGGGGTATTTCG
1 GTCATCT-TACCCTAT-GGGGTATTTCG
* * *
27028913 GTCATTTTACCCTCTAT-GGATATTTTG
1 GTCATCTTA-CC-CTATGGGGTATTTCG
* *
27028940 GTCATTTTACCCTATTGGGGTATTTTG
1 GTCATCTTACCCTA-TGGGGTATTTCG
*
27028967 GTCATCTTACCTTATGGGAGTA-TTCG
1 GTCATCTTACCCTATGGG-GTATTTCG
* *
27028993 ATCATCTTACCCTATGGGGTTATTTCT
1 GTCATCTTACCCTATGGGG-TATTTCG
* *
27029020 GTCTTTTTACCCTATGGGGTATTTCG
1 GTCATCTTACCCTATGGGGTATTTCG
*
27029046 GTCATCTTACCCTATGGGGGTATTTCA
1 GTCATCTTACCCTAT-GGGGTATTTCG
*
27029073 GTCATCTTACCCTAT-GGGCATTTCG
1 GTCATCTTACCCTATGGGGTATTTCG
27029098 GTCATCTTACCCTATGGGGGTATTT
1 GTCATCTTACCCTAT-GGGGTATTT
27029123 TGATCACCAT
Statistics
Matches: 256, Mismatches: 23, Indels: 24
0.84 0.08 0.08
Matches are distributed among these distances:
25 27 0.11
26 48 0.19
27 174 0.68
28 3 0.01
29 4 0.02
ACGTcount: A:0.17, C:0.20, G:0.22, T:0.41
Consensus pattern (26 bp):
GTCATCTTACCCTATGGGGTATTTCG
Found at i:27028863 original size:81 final size:82
Alignment explanation
Indices: 27028778--27028948 Score: 177
Period size: 81 Copynumber: 2.1 Consensus size: 82
27028768 GGGCAAAATC
*
27028778 GTCATTTTAACACATA-AGGGCAAAAT-AGTCATTTTACCCTATAGGGGTATTTCGGTCATTTTA
1 GTCATTTTAAC-CATATAGGGCAAAATCAGTCATTGTACCCTATAGGGGTATTTCGGTCATTTTA
*
27028841 CCCTATAGGGGTATTTCA
65 CCCTATAGGGATATTTCA
* * * ** ** * *
27028859 GTCATCTT-ACCCTATGGGGGTATTTCGGTCATTGTACCCTATGGGGGTATTTCGGTCATTTTAC
1 GTCATTTTAACCATATAGGGCAAAATCAGTCATTGTACCCTATAGGGGTATTTCGGTCATTTTAC
* * **
27028923 CCTCTATGGATATTTTG
66 CCTATAGGGATATTTCA
27028940 GTCATTTTA
1 GTCATTTTA
27028949 CCCTATTGGG
Statistics
Matches: 71, Mismatches: 16, Indels: 5
0.77 0.17 0.05
Matches are distributed among these distances:
79 3 0.04
80 7 0.10
81 61 0.86
ACGTcount: A:0.22, C:0.18, G:0.20, T:0.39
Consensus pattern (82 bp):
GTCATTTTAACCATATAGGGCAAAATCAGTCATTGTACCCTATAGGGGTATTTCGGTCATTTTAC
CCTATAGGGATATTTCA
Found at i:27031362 original size:17 final size:16
Alignment explanation
Indices: 27031342--27031373 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
27031332 CTTCAAAGAC
27031342 ATTAAAAATACAAAAAA
1 ATTAAAAATA-AAAAAA
27031359 ATTAAAAATAAAAAA
1 ATTAAAAATAAAAAA
27031374 CGGGGTTAGG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.78, C:0.03, G:0.00, T:0.19
Consensus pattern (16 bp):
ATTAAAAATAAAAAAA
Found at i:27035421 original size:27 final size:27
Alignment explanation
Indices: 27035381--27035594 Score: 245
Period size: 27 Copynumber: 8.0 Consensus size: 27
27035371 TAAAATACTT
** **
27035381 TAGTTTACCAAATTACCAAAATACCAT
1 TAGTTTATAAAATTACCAAAATACCCC
* *
27035408 TGGTTTACAAAATTACCAAAATA-CCC
1 TAGTTTATAAAATTACCAAAATACCCC
* * *
27035434 T-GTTTTGTAAAATTACTAAAATACCCT
1 TAG-TTTATAAAATTACCAAAATACCCC
*
27035461 TGGTTTATAAAATTACCAAAATACCCC
1 TAGTTTATAAAATTACCAAAATACCCC
*
27035488 TAGTTTGTAAAATTACCAAAATACCCC
1 TAGTTTATAAAATTACCAAAATACCCC
*
27035515 TAGTTTATAAAATTATCAAAATACCCC
1 TAGTTTATAAAATTACCAAAATACCCC
*
27035542 TAGTTTGTAAAATTACCAAAATACCCC
1 TAGTTTATAAAATTACCAAAATACCCC
* **
27035569 T-GATTTATGAAATTACTGAAATACCC
1 TAG-TTTATAAAATTACCAAAATACCC
27035595 TCGACCTGTA
Statistics
Matches: 162, Mismatches: 21, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
25 1 0.01
26 20 0.12
27 140 0.86
28 1 0.01
ACGTcount: A:0.41, C:0.20, G:0.07, T:0.32
Consensus pattern (27 bp):
TAGTTTATAAAATTACCAAAATACCCC
Found at i:27035521 original size:54 final size:54
Alignment explanation
Indices: 27035390--27035594 Score: 288
Period size: 54 Copynumber: 3.8 Consensus size: 54
27035380 TTAGTTTACC
** *
27035390 AAATTACCAAAATACCATTGGTTTACAAAATTACCAAAATA-CCCT-GTTTTGTA
1 AAATTACCAAAATACCCCTGGTTTATAAAATTACCAAAATACCCCTAG-TTTGTA
* *
27035443 AAATTACTAAAATACCCTTGGTTTATAAAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTATAAAATTACCAAAATACCCCTAGTTTGTA
* *
27035497 AAATTACCAAAATACCCCTAGTTTATAAAATTATCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTATAAAATTACCAAAATACCCCTAGTTTGTA
* * **
27035551 AAATTACCAAAATACCCCTGATTTATGAAATTACTGAAATACCC
1 AAATTACCAAAATACCCCTGGTTTATAAAATTACCAAAATACCC
27035595 TCGACCTGTA
Statistics
Matches: 137, Mismatches: 13, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
53 38 0.28
54 98 0.72
55 1 0.01
ACGTcount: A:0.42, C:0.20, G:0.07, T:0.31
Consensus pattern (54 bp):
AAATTACCAAAATACCCCTGGTTTATAAAATTACCAAAATACCCCTAGTTTGTA
Found at i:27035565 original size:81 final size:79
Alignment explanation
Indices: 27035390--27035647 Score: 261
Period size: 81 Copynumber: 3.2 Consensus size: 79
27035380 TTAGTTTACC
** * *
27035390 AAATTACCAAAATACCATTGGTTTACAAAATTACCAAAATACCCTGTTTTGTAAAATTA-CTAAA
1 AAATTACCAAAATACCCCT-GTTTATAAAATTACCAAAATACCCTGATTTGTAAAATTATC-AAA
* * *
27035454 ATACCCTTGGTTTATA
64 ATACCCCTAGTTTGTA
* *
27035470 AAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCT-AGTTTATAAAATTATCAA
1 AAATTACCAAAATACCCCT-GTTTATAAAATTACCAAAATA-CCCTGA-TTTGTAAAATTATCAA
27035534 AATACCCCTAGTTTGTA
63 AATACCCCTAGTTTGTA
* ** ** **
27035551 AAATTACCAAAATACCCCTGATTTATGAAATTACTGAAATACCCTCGACCTGTAAAATTATTGAA
1 AAATTACCAAAATACCCCTG-TTTATAAAATTACCAAAATACCCT-GATTTGTAAAATTATCAAA
*
27035616 ATA-CCCTAGACTTGTA
64 ATACCCCTAG-TTTGTA
*
27035632 AAATTACCAAAGTACC
1 AAATTACCAAAATACC
27035648 ATTGATTTAC
Statistics
Matches: 150, Mismatches: 21, Indels: 13
0.82 0.11 0.07
Matches are distributed among these distances:
80 47 0.31
81 101 0.67
82 2 0.01
ACGTcount: A:0.41, C:0.20, G:0.08, T:0.31
Consensus pattern (79 bp):
AAATTACCAAAATACCCCTGTTTATAAAATTACCAAAATACCCTGATTTGTAAAATTATCAAAAT
ACCCCTAGTTTGTA
Found at i:27035605 original size:54 final size:54
Alignment explanation
Indices: 27035390--27035647 Score: 254
Period size: 54 Copynumber: 4.8 Consensus size: 54
27035380 TTAGTTTACC
** * * * *
27035390 AAATTACCAAAATACCATTGGTTTACAAAATTACCAAAATACCCTG-TTTTGTA
1 AAATTACCAAAATACCCCTGATTTATAAAATTACCAAAATACCCCGAGTTTGTA
* * * *
27035443 AAATTACTAAAATACCCTTGGTTTATAAAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGATTTATAAAATTACCAAAATACCCCGAGTTTGTA
* *
27035497 AAATTACCAAAATACCCCT-AGTTTATAAAATTATCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGA-TTTATAAAATTACCAAAATACCCCGAGTTTGTA
* ** **
27035551 AAATTACCAAAATACCCCTGATTTATGAAATTACTGAAATACCCTCGA-CCTGTA
1 AAATTACCAAAATACCCCTGATTTATAAAATTACCAAAATACCC-CGAGTTTGTA
*** * * *
27035605 AAATTATTGAAATA-CCCTAGACTTGTAAAATTACCAAAGTACC
1 AAATTACCAAAATACCCCT-GATTTATAAAATTACCAAAATACC
27035648 ATTGATTTAC
Statistics
Matches: 174, Mismatches: 26, Indels: 9
0.83 0.12 0.04
Matches are distributed among these distances:
53 45 0.26
54 126 0.72
55 3 0.02
ACGTcount: A:0.41, C:0.20, G:0.08, T:0.31
Consensus pattern (54 bp):
AAATTACCAAAATACCCCTGATTTATAAAATTACCAAAATACCCCGAGTTTGTA
Found at i:27035701 original size:27 final size:27
Alignment explanation
Indices: 27035390--27035703 Score: 224
Period size: 27 Copynumber: 11.7 Consensus size: 27
27035380 TTAGTTTACC
* * * *
27035390 AAATTACCAAAATACCATTGGTTTACA
1 AAATTACCAAAATACCCTCGATTTATA
* *
27035417 AAATTACCAAAATACCCT-GTTTTGTA
1 AAATTACCAAAATACCCTCGATTTATA
* * *
27035443 AAATTACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCTCGATTTATA
* *
27035470 AAATTACCAAAATACCC-CTAGTTTGTA
1 AAATTACCAAAATACCCTCGA-TTTATA
*
27035497 AAATTACCAAAATACCC-CTAGTTTATA
1 AAATTACCAAAATACCCTCGA-TTTATA
* * *
27035524 AAATTATCAAAATACCC-CTAGTTTGTA
1 AAATTACCAAAATACCCTCGA-TTTATA
*
27035551 AAATTACCAAAATACCC-CTGATTTATG
1 AAATTACCAAAATACCCTC-GATTTATA
** ** *
27035578 AAATTACTGAAATACCCTCGACCTGTA
1 AAATTACCAAAATACCCTCGATTTATA
*** * * *
27035605 AAATTATTGAAATACCCTAGACTTGTA
1 AAATTACCAAAATACCCTCGATTTATA
* * * *
27035632 AAATTACCAAAGTACCATTGATTTACA
1 AAATTACCAAAATACCCTCGATTTATA
* *** *
27035659 GAATTACCATTTTACCCTCGATTTACA
1 AAATTACCAAAATACCCTCGATTTATA
*
27035686 AAATTACCGAAATACCCT
1 AAATTACCAAAATACCCT
27035704 TGTAGGGTAG
Statistics
Matches: 235, Mismatches: 48, Indels: 8
0.81 0.16 0.03
Matches are distributed among these distances:
26 22 0.09
27 211 0.90
28 2 0.01
ACGTcount: A:0.40, C:0.21, G:0.08, T:0.31
Consensus pattern (27 bp):
AAATTACCAAAATACCCTCGATTTATA
Found at i:27035720 original size:27 final size:27
Alignment explanation
Indices: 27035690--27035905 Score: 256
Period size: 27 Copynumber: 8.0 Consensus size: 27
27035680 TTTACAAAAT
27035690 TACCGAAATACCCTTGTAGGGTAGAAA
1 TACCGAAATACCCTTGTAGGGTAGAAA
* *
27035717 TACCGAAATACCCCTATAGGGTAGAAA
1 TACCGAAATACCCTTGTAGGGTAGAAA
* *
27035744 TACCAAAATACCCTTGTAGGGTAGAAT
1 TACCGAAATACCCTTGTAGGGTAGAAA
** * *
27035771 TACTAAAATACCCCTGTAGGGTAGAAT
1 TACCGAAATACCCTTGTAGGGTAGAAA
* *
27035798 TATCGAAATACCCTTGTATGGTAGAAA
1 TACCGAAATACCCTTGTAGGGTAGAAA
* *
27035825 TACCGAAATACCCCTGTAGGGTAGAAT
1 TACCGAAATACCCTTGTAGGGTAGAAA
* * *
27035852 TACTGAAATACTCC-TGTAAGGTAGAAT
1 TACCGAAATAC-CCTTGTAGGGTAGAAA
* *
27035879 TACCGAGATACCCTTGTGGGGTA-AAA
1 TACCGAAATACCCTTGTAGGGTAGAAA
27035905 T
1 T
27035906 TACCATTTTA
Statistics
Matches: 162, Mismatches: 25, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
26 5 0.03
27 155 0.96
28 2 0.01
ACGTcount: A:0.36, C:0.19, G:0.20, T:0.25
Consensus pattern (27 bp):
TACCGAAATACCCTTGTAGGGTAGAAA
Found at i:27035892 original size:81 final size:80
Alignment explanation
Indices: 27035687--27035910 Score: 297
Period size: 81 Copynumber: 2.8 Consensus size: 80
27035677 CGATTTACAA
* * * *
27035687 AATTACCGAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTATAGGGTAGAAATACCAAAA
1 AATTACTGAAATACCC-TGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAAATACCAAAA
*
27035752 TACCCTTGTAGGGTAG
65 TACCCCTGTAGGGTAG
* * * *
27035768 AATTACTAAAATACCCCTGTAGGGTAGAATTATCGAAATACCCTTGTATGGTAGAAATACCGAAA
1 AATTACTGAAATA-CCCTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAAATACCAAAA
27035833 TACCCCTGTAGGGTAG
65 TACCCCTGTAGGGTAG
* * *
27035849 AATTACTGAAATACTCCTGTAAGGTAGAATTACCGAGATACCCTTGTGGGGTA-AAATTACCA
1 AATTACTGAAATAC-CCTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAAA-TACCA
27035911 TTTTACCCCT
Statistics
Matches: 124, Mismatches: 16, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
80 4 0.03
81 117 0.94
82 3 0.02
ACGTcount: A:0.37, C:0.19, G:0.20, T:0.25
Consensus pattern (80 bp):
AATTACTGAAATACCCTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAAATACCAAAAT
ACCCCTGTAGGGTAG
Found at i:27035901 original size:54 final size:54
Alignment explanation
Indices: 27035687--27035909 Score: 295
Period size: 54 Copynumber: 4.1 Consensus size: 54
27035677 CGATTTACAA
*
27035687 AATTACCGAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTGTAGGGTAG
* * * **
27035741 AAATACCAAAATACCCTTGTAGGGTAGAATTACTAAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTGTAGGGTAG
* *
27035795 AATTATCGAAATACCCTTGTATGGTAGAAATACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTGTAGGGTAG
* * * * * * *
27035849 AATTACTGAAATACTCC-TGTAAGGTAGAATTACCGAGATACCCTTGTGGGGTAA
1 AATTACCGAAATAC-CCTTGTAGGGTAGAAATACCGAAATACCCCTGTAGGGTAG
27035903 AATTACC
1 AATTACC
27035910 ATTTTACCCC
Statistics
Matches: 146, Mismatches: 22, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
54 144 0.99
55 2 0.01
ACGTcount: A:0.36, C:0.19, G:0.20, T:0.25
Consensus pattern (54 bp):
AATTACCGAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTGTAGGGTAG
Found at i:27036304 original size:27 final size:26
Alignment explanation
Indices: 27036264--27036323 Score: 66
Period size: 27 Copynumber: 2.3 Consensus size: 26
27036254 GCATATATAT
* *
27036264 ATATCTATTCTGGTGGCCTAGCCACA
1 ATATCTGTTCTGGTGACCTAGCCACA
* * *
27036290 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGT-TCTGGTGACCTAGCCACA
27036317 ATATCTG
1 ATATCTG
27036324 GCAGCCTCGC
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 7 0.25
27 21 0.75
ACGTcount: A:0.23, C:0.23, G:0.18, T:0.35
Consensus pattern (26 bp):
ATATCTGTTCTGGTGACCTAGCCACA
Found at i:27036451 original size:6 final size:6
Alignment explanation
Indices: 27036442--27036514 Score: 78
Period size: 6 Copynumber: 11.8 Consensus size: 6
27036432 TTGCATTCAC
* *
27036442 ATTCTG ATTCTG ATTCTG -TTACCTG ATACTG ATTCTG ATTCTG -TCACCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG AT--TCTG
27036492 ATTCTG ATTCTG ATTCTG ATTCT
1 ATTCTG ATTCTG ATTCTG ATTCT
27036515 CATTTTCATT
Statistics
Matches: 57, Mismatches: 4, Indels: 12
0.78 0.05 0.16
Matches are distributed among these distances:
5 3 0.05
6 46 0.81
7 6 0.11
8 2 0.04
ACGTcount: A:0.18, C:0.21, G:0.15, T:0.47
Consensus pattern (6 bp):
ATTCTG
Found at i:27036473 original size:25 final size:25
Alignment explanation
Indices: 27036445--27036509 Score: 112
Period size: 25 Copynumber: 2.6 Consensus size: 25
27036435 CATTCACATT
*
27036445 CTGATTCTGATTCTGTTACCTGATA
1 CTGATTCTGATTCTGTCACCTGATA
*
27036470 CTGATTCTGATTCTGTCACCTGATT
1 CTGATTCTGATTCTGTCACCTGATA
27036495 CTGATTCTGATTCTG
1 CTGATTCTGATTCTG
27036510 ATTCTCATTT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
25 38 1.00
ACGTcount: A:0.17, C:0.22, G:0.17, T:0.45
Consensus pattern (25 bp):
CTGATTCTGATTCTGTCACCTGATA
Found at i:27036477 original size:31 final size:28
Alignment explanation
Indices: 27036442--27036514 Score: 89
Period size: 25 Copynumber: 2.6 Consensus size: 28
27036432 TTGCATTCAC
27036442 ATTCTGATTCTGATTCTGTTACCTGATACTG
1 ATTCTGATTCTGATTC---TACCTGATACTG
*
27036473 ATTCTGATTCTG--TC-ACCTGATTCTG
1 ATTCTGATTCTGATTCTACCTGATACTG
27036498 ATTCTGATTCTGATTCT
1 ATTCTGATTCTGATTCT
27036515 CATTTTCATT
Statistics
Matches: 38, Mismatches: 1, Indels: 9
0.79 0.02 0.19
Matches are distributed among these distances:
25 22 0.58
27 2 0.05
29 2 0.05
31 12 0.32
ACGTcount: A:0.18, C:0.21, G:0.15, T:0.47
Consensus pattern (28 bp):
ATTCTGATTCTGATTCTACCTGATACTG
Found at i:27039113 original size:23 final size:23
Alignment explanation
Indices: 27039060--27039113 Score: 54
Period size: 24 Copynumber: 2.3 Consensus size: 23
27039050 AAAAGAACAA
* *
27039060 AAAGAAAAAATAGCTAAAAAAAG
1 AAAGAAAAAAGAGCGAAAAAAAG
* * *
27039083 AAAGGAAAAAAGAGGGAAAAGAAT
1 AAA-GAAAAAAGAGCGAAAAAAAG
27039107 AAAGAAA
1 AAAGAAA
27039114 GTGAAAAAAA
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
23 7 0.28
24 18 0.72
ACGTcount: A:0.72, C:0.02, G:0.20, T:0.06
Consensus pattern (23 bp):
AAAGAAAAAAGAGCGAAAAAAAG
Found at i:27039138 original size:28 final size:28
Alignment explanation
Indices: 27039077--27039143 Score: 84
Period size: 28 Copynumber: 2.4 Consensus size: 28
27039067 AAATAGCTAA
*
27039077 AAAAAGAAAG-GAAAAAAGAGGGAAAAG
1 AAAAAGAAAGTGAAAAAAGAGAGAAAAG
*
27039104 AATAAAGAAAGTGAAAAAA-ATGAGAGAAG
1 AA-AAAGAAAGTGAAAAAAGA-GAGAAAAG
27039133 AAAAAGAAAGT
1 AAAAAGAAAGT
27039144 AAAGATGAAA
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
27 2 0.06
28 18 0.51
29 15 0.43
ACGTcount: A:0.69, C:0.00, G:0.25, T:0.06
Consensus pattern (28 bp):
AAAAAGAAAGTGAAAAAAGAGAGAAAAG
Found at i:27047586 original size:22 final size:22
Alignment explanation
Indices: 27047551--27047604 Score: 56
Period size: 22 Copynumber: 2.5 Consensus size: 22
27047541 CGGCCTCTAG
* **
27047551 CACGAGCATG-TCCTAGGGTCA
1 CACGAGCGTGTTCCTAGGACCA
* *
27047572 CACGGGCGTGTTCCTTGGACCA
1 CACGAGCGTGTTCCTAGGACCA
27047594 CACGAGCGTGT
1 CACGAGCGTGT
27047605 GAGCTCCGCA
Statistics
Matches: 26, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
21 8 0.31
22 18 0.69
ACGTcount: A:0.19, C:0.30, G:0.31, T:0.20
Consensus pattern (22 bp):
CACGAGCGTGTTCCTAGGACCA
Found at i:27052094 original size:38 final size:38
Alignment explanation
Indices: 27052043--27052119 Score: 154
Period size: 38 Copynumber: 2.0 Consensus size: 38
27052033 TGATGTTTTT
27052043 GGTATTTGAAATATCTAATTTTCCTTCATTTGCCATCA
1 GGTATTTGAAATATCTAATTTTCCTTCATTTGCCATCA
27052081 GGTATTTGAAATATCTAATTTTCCTTCATTTGCCATCA
1 GGTATTTGAAATATCTAATTTTCCTTCATTTGCCATCA
27052119 G
1 G
27052120 CTTCTGCAAT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.26, C:0.18, G:0.12, T:0.44
Consensus pattern (38 bp):
GGTATTTGAAATATCTAATTTTCCTTCATTTGCCATCA
Found at i:27054211 original size:32 final size:32
Alignment explanation
Indices: 27054175--27054239 Score: 121
Period size: 32 Copynumber: 2.0 Consensus size: 32
27054165 ATTAATGTAA
27054175 TTTGTGTTAAGTTATTATTATTACTATTCCTT
1 TTTGTGTTAAGTTATTATTATTACTATTCCTT
*
27054207 TTTGTGTTAAGTTATTATTATTACTATTGCTT
1 TTTGTGTTAAGTTATTATTATTACTATTCCTT
27054239 T
1 T
27054240 CTATGCCAAT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.22, C:0.08, G:0.11, T:0.60
Consensus pattern (32 bp):
TTTGTGTTAAGTTATTATTATTACTATTCCTT
Found at i:27057840 original size:39 final size:40
Alignment explanation
Indices: 27057726--27057949 Score: 262
Period size: 40 Copynumber: 5.7 Consensus size: 40
27057716 GCTACTCGTT
* * *
27057726 CAAATGTCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCA
* *
27057766 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
* *
27057806 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTTGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
*
27057845 CAAATGCCTTCAGG-CTTAGCCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
* * * *
27057884 CAAATGCCTTC-GGATCTTAGTCTGG-ATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGAAT-TAGTAAC-TCGCA
27057925 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
27057950 CATCATTCGA
Statistics
Matches: 161, Mismatches: 16, Indels: 13
0.85 0.08 0.07
Matches are distributed among these distances:
38 2 0.01
39 71 0.44
40 75 0.47
41 13 0.08
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
Found at i:27070753 original size:21 final size:21
Alignment explanation
Indices: 27070729--27070768 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
27070719 GCCTAATATG
*
27070729 TGAATTGGATTGAATTGAGTA
1 TGAATTGGATTAAATTGAGTA
*
27070750 TGAATTGTATTAAATTGAG
1 TGAATTGGATTAAATTGAG
27070769 CTAAATTTAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.35, C:0.00, G:0.25, T:0.40
Consensus pattern (21 bp):
TGAATTGGATTAAATTGAGTA
Found at i:27076046 original size:11 final size:11
Alignment explanation
Indices: 27076030--27076054 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
27076020 ATGTAAGCGA
27076030 TTTTGATGATT
1 TTTTGATGATT
27076041 TTTTGATGATT
1 TTTTGATGATT
27076052 TTT
1 TTT
27076055 ACATTTTTAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.16, C:0.00, G:0.16, T:0.68
Consensus pattern (11 bp):
TTTTGATGATT
Found at i:27080643 original size:13 final size:13
Alignment explanation
Indices: 27080616--27080669 Score: 101
Period size: 13 Copynumber: 4.2 Consensus size: 13
27080606 GAGTTGATCC
27080616 GTAAATGGA-TTT
1 GTAAATGGATTTT
27080628 GTAAATGGATTTT
1 GTAAATGGATTTT
27080641 GTAAATGGATTTT
1 GTAAATGGATTTT
27080654 GTAAATGGATTTT
1 GTAAATGGATTTT
27080667 GTA
1 GTA
27080670 TGATAGTCAC
Statistics
Matches: 41, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
12 9 0.22
13 32 0.78
ACGTcount: A:0.31, C:0.00, G:0.24, T:0.44
Consensus pattern (13 bp):
GTAAATGGATTTT
Found at i:27083201 original size:12 final size:12
Alignment explanation
Indices: 27083184--27083208 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
27083174 ATGTAAGTGA
27083184 TCTTGATGATTT
1 TCTTGATGATTT
27083196 TCTTGATGATTT
1 TCTTGATGATTT
27083208 T
1 T
27083209 TACATTTTTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.08, G:0.16, T:0.60
Consensus pattern (12 bp):
TCTTGATGATTT
Found at i:27084039 original size:44 final size:47
Alignment explanation
Indices: 27083921--27084129 Score: 155
Period size: 47 Copynumber: 4.5 Consensus size: 47
27083911 AGGTGATTTG
*
27083921 TGTGCCAGAGTAAGACATGTCTGGGACATGCATCAGCCTCAACAGAGA
1 TGTGCCAGTGTAAGACATGTCTGGGACATGCATCAGCCT-AACAGAGA
* ** * * *
27083969 T-AGCCAGTGTAAGATGTGTCTAGGACATGCATC-GGCT-A-AGAGT
1 TGTGCCAGTGTAAGACATGTCTGGGACATGCATCAGCCTAACAGAGA
* * * * *
27084012 TGTGCTAGTGTAAGACATGTCTGGGACATGCATCAGCAT-GCATAAA
1 TGTGCCAGTGTAAGACATGTCTGGGACATGCATCAGCCTAACAGAGA
* * *
27084058 TGAGAGCCAGTGTAAGACCATGTCTGAGACATGACATC-GGC--ACAGAGA
1 T--GTGCCAGTGTAAGA-CATGTCTGGGACATG-CATCAGCCTAACAGAGA
*
27084106 TGAGTGCCAGAGTAAGACATGTCT
1 T--GTGCCAGTGTAAGACATGTCT
27084130 AAGGCATGTT
Statistics
Matches: 126, Mismatches: 28, Indels: 15
0.75 0.17 0.09
Matches are distributed among these distances:
43 5 0.04
44 28 0.22
45 2 0.02
46 6 0.05
47 34 0.27
48 32 0.25
49 15 0.12
50 4 0.03
ACGTcount: A:0.31, C:0.19, G:0.28, T:0.22
Consensus pattern (47 bp):
TGTGCCAGTGTAAGACATGTCTGGGACATGCATCAGCCTAACAGAGA
Found at i:27084109 original size:48 final size:47
Alignment explanation
Indices: 27084018--27084129 Score: 136
Period size: 48 Copynumber: 2.3 Consensus size: 47
27084008 GAGTTGTGCT
* *
27084018 AGTGTAAGACATGTCTGGGACATGCATCAGCATGCATAAATGAGAGCC
1 AGTGTAAGACATGTCTGAGACATGCATCAGCA-GCAGAAATGAGAGCC
* * *
27084066 AGTGTAAGACCATGTCTGAGACATGACATCGGCA-CAGAGATGAGTGCC
1 AGTGTAAGA-CATGTCTGAGACATG-CATCAGCAGCAGAAATGAGAGCC
*
27084114 AGAGTAAGACATGTCT
1 AGTGTAAGACATGTCT
27084130 AAGGCATGTT
Statistics
Matches: 56, Mismatches: 6, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
47 7 0.12
48 28 0.50
49 14 0.25
50 7 0.12
ACGTcount: A:0.33, C:0.19, G:0.28, T:0.21
Consensus pattern (47 bp):
AGTGTAAGACATGTCTGAGACATGCATCAGCAGCAGAAATGAGAGCC
Found at i:27084280 original size:198 final size:198
Alignment explanation
Indices: 27083931--27084297 Score: 581
Period size: 198 Copynumber: 1.9 Consensus size: 198
27083921 TGTGCCAGAG
*
27083931 TAAGACATGTCTGGGACATGCATCAGCCTCAACAGAGATAGCCAGTGTAAGATGTGTCTAGGACA
1 TAAGACATGTCTGGGACATGCATCAGCCTCAACAGAGATAGCCAGTGTAAAATGTGTCTAGGACA
* * * *
27083996 TGCATCGGCTAAGAGTTGTGCTAGTGTAAGACATGTCTGGGACATGCATCAGCATGCATAAATGA
66 CGCATCGGCTAAGAGTTGTCCTAGTGTAAGACATGTCTGAGACATGCATCAGCACGCATAAATGA
27084061 GAGCCAGTGTAAGACCATGTCTGAGACATGACATCGGCACAGAGATGAGTGCCAGAGTAAGACAT
131 GAGCCAGTGTAAGACCATGTCTGAGACATGACATCGGCACAGAGATGAGTGCCAGAGTAAGACAT
27084126 GTC
196 GTC
* * * * *
27084129 TAAGGCATGTTTGGGACATTCATCGGCCTCAACAGAGATAGCCAGTGTAAAATGTGTCTGGGACA
1 TAAGACATGTCTGGGACATGCATCAGCCTCAACAGAGATAGCCAGTGTAAAATGTGTCTAGGACA
* * * *
27084194 CGCATCGGCTAAGAGTTGTCCTATTGTAAGACATGTTTGAGACATGCATCAGCACGTATATATGA
66 CGCATCGGCTAAGAGTTGTCCTAGTGTAAGACATGTCTGAGACATGCATCAGCACGCATAAATGA
* * *
27084259 GAGCCAGTGTAAGACCATGTCTGGGATATGGCATCGGCA
131 GAGCCAGTGTAAGACCATGTCTGAGACATGACATCGGCA
27084298 ATATATACCA
Statistics
Matches: 152, Mismatches: 17, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
198 152 1.00
ACGTcount: A:0.30, C:0.19, G:0.28, T:0.23
Consensus pattern (198 bp):
TAAGACATGTCTGGGACATGCATCAGCCTCAACAGAGATAGCCAGTGTAAAATGTGTCTAGGACA
CGCATCGGCTAAGAGTTGTCCTAGTGTAAGACATGTCTGAGACATGCATCAGCACGCATAAATGA
GAGCCAGTGTAAGACCATGTCTGAGACATGACATCGGCACAGAGATGAGTGCCAGAGTAAGACAT
GTC
Found at i:27085693 original size:16 final size:16
Alignment explanation
Indices: 27085665--27085735 Score: 79
Period size: 16 Copynumber: 4.4 Consensus size: 16
27085655 GTTTGGTTTA
* *
27085665 CTGTAATGAAATAGGG
1 CTGTAATGGAATAGAG
*
27085681 CTGTAATTGAATAGAG
1 CTGTAATGGAATAGAG
* *
27085697 CTATAATGGAGTAGAG
1 CTGTAATGGAATAGAG
* *
27085713 TTGTACTGGAATAGAG
1 CTGTAATGGAATAGAG
27085729 CTGTAAT
1 CTGTAAT
27085736 CAGTAATTCA
Statistics
Matches: 43, Mismatches: 12, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
16 43 1.00
ACGTcount: A:0.35, C:0.07, G:0.28, T:0.30
Consensus pattern (16 bp):
CTGTAATGGAATAGAG
Found at i:27085803 original size:44 final size:46
Alignment explanation
Indices: 27085721--27085809 Score: 130
Period size: 44 Copynumber: 2.0 Consensus size: 46
27085711 AGTTGTACTG
*
27085721 GAATAGAGCTGTAATCAGTAATTCAATTGTTTGGTTGAATGGAATT
1 GAATAGAGCTGTAATCAGTAATTCAATTATTTGGTTGAATGGAATT
*
27085767 GAATAGAGCTGTAAT-AG-AATTC-TTCTATTTGGTTGAATGGAAT
1 GAATAGAGCTGTAATCAGTAATTCAAT-TATTTGGTTGAATGGAAT
27085810 AGATGTTGTA
Statistics
Matches: 40, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
43 1 0.03
44 22 0.55
45 2 0.05
46 15 0.38
ACGTcount: A:0.33, C:0.07, G:0.24, T:0.37
Consensus pattern (46 bp):
GAATAGAGCTGTAATCAGTAATTCAATTATTTGGTTGAATGGAATT
Found at i:27090317 original size:54 final size:55
Alignment explanation
Indices: 27090114--27090317 Score: 155
Period size: 55 Copynumber: 3.8 Consensus size: 55
27090104 CTCTTTAAAT
* * ** * *
27090114 TTACC-ATCGCCATGTCTTGACAAGGTCTTATGTGGTATCCTTACCTTAT--GAAC
1 TTACCAAT-GCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATCAAAAC
** * * * ** **
27090167 CCACCATTGCCATGCCTTGACATGGTCTTACATGGGATCTTTGCCTTATCGTAGT
1 TTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATCAAAAC
* * * * * * *
27090222 TTATCAACGCCATGTCTTGACATGGTCTTAAATGATTTCCTTGCCTTGT-AAAAC
1 TTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATCAAAAC
* *
27090276 TTACCAATGCCATGCCTTGGCATGGTCTTACTTGGTATCCTT
1 TTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTT
27090318 AAACCCTACT
Statistics
Matches: 111, Mismatches: 37, Indels: 5
0.73 0.24 0.03
Matches are distributed among these distances:
53 37 0.33
54 36 0.32
55 38 0.34
ACGTcount: A:0.21, C:0.25, G:0.18, T:0.36
Consensus pattern (55 bp):
TTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATCAAAAC
Found at i:27097292 original size:21 final size:21
Alignment explanation
Indices: 27097229--27097294 Score: 71
Period size: 21 Copynumber: 3.1 Consensus size: 21
27097219 TCTTTTATTT
* * *
27097229 ATTATAACTATTATATTATATC
1 ATTATAATTATTATATTTTA-A
*
27097251 ATTATTATTATTATATTTTAA
1 ATTATAATTATTATATTTTAA
27097272 ATTATAATTATTAT-TTCTTAA
1 ATTATAATTATTATATT-TTAA
27097293 AT
1 AT
27097295 ATTAAGTAAA
Statistics
Matches: 38, Mismatches: 5, Indels: 3
0.83 0.11 0.07
Matches are distributed among these distances:
20 2 0.05
21 19 0.50
22 17 0.45
ACGTcount: A:0.39, C:0.05, G:0.00, T:0.56
Consensus pattern (21 bp):
ATTATAATTATTATATTTTAA
Found at i:27104597 original size:68 final size:67
Alignment explanation
Indices: 27104525--27104674 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
27104515 CATCATGTGT
* * * *
27104525 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
27104587 ATGTAG
62 ATGTAG
** * *
27104593 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
27104658 AG
66 AG
27104660 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
27104675 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:27104630 original size:64 final size:64
Alignment explanation
Indices: 27104549--27104732 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
27104539 AGACATTATG
* *
27104549 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
27104613 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
27104678 AA
63 AA
* * * *
27104680 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
27104733 CGAACTATAT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 21 0.21
65 8 0.08
66 16 0.16
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:27115631 original size:21 final size:21
Alignment explanation
Indices: 27115590--27115632 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
27115580 ACATAATCCA
*
27115590 ATATATATAAAAAAATTATAT
1 ATATATATAAAAAAATCATAT
*
27115611 ATATATATATACAAAA-CATAT
1 ATATATATA-AAAAAATCATAT
27115632 A
1 A
27115633 ATGAAATAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 14 0.74
22 5 0.26
ACGTcount: A:0.60, C:0.05, G:0.00, T:0.35
Consensus pattern (21 bp):
ATATATATAAAAAAATCATAT
Found at i:27117583 original size:43 final size:43
Alignment explanation
Indices: 27117502--27117587 Score: 113
Period size: 43 Copynumber: 2.0 Consensus size: 43
27117492 AAATCGTACA
* **
27117502 ATGCCAACGTCCCAGACATGGTCTTACATGTAGTCACATATCG
1 ATGCCAACGTCCCAGACAGGGTCTTACATGTAAACACATATCG
27117545 ATGCC-ACTGTCCCAGACAGGGTCTTAC-TCGTAAACACATATCG
1 ATGCCAAC-GTCCCAGACAGGGTCTTACAT-GTAAACACATATCG
27117588 GAGTCACATA
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
42 3 0.08
43 35 0.92
ACGTcount: A:0.28, C:0.29, G:0.19, T:0.24
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACAGGGTCTTACATGTAAACACATATCG
Found at i:27119888 original size:35 final size:35
Alignment explanation
Indices: 27119837--27120005 Score: 185
Period size: 35 Copynumber: 4.8 Consensus size: 35
27119827 AGGTAAGTAT
* *
27119837 ATGTGAGGTTACATTGAACTTGTATATTCGGCTGC
1 ATGTGAGGTTATATTGAACTTGTATATTCGGCTAC
*
27119872 ATGTGAGGTTATATTGAACTTGTATATTCGGTTAC
1 ATGTGAGGTTATATTGAACTTGTATATTCGGCTAC
* * * *
27119907 ATGTGAGATTATATTGAATTTGTATATTCGGCCAT
1 ATGTGAGGTTATATTGAACTTGTATATTCGGCTAC
* * * * * * *
27119942 ATGAGATGTTTTATTGAACTTGAACATTAGGTTAC
1 ATGTGAGGTTATATTGAACTTGTATATTCGGCTAC
* * *
27119977 ATGTGATGATATATTGAACTTATATATTC
1 ATGTGAGGTTATATTGAACTTGTATATTC
27120006 AGTATAATGA
Statistics
Matches: 108, Mismatches: 26, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
35 108 1.00
ACGTcount: A:0.28, C:0.09, G:0.21, T:0.41
Consensus pattern (35 bp):
ATGTGAGGTTATATTGAACTTGTATATTCGGCTAC
Found at i:27119930 original size:70 final size:69
Alignment explanation
Indices: 27119837--27120005 Score: 207
Period size: 70 Copynumber: 2.4 Consensus size: 69
27119827 AGGTAAGTAT
* * * * * *
27119837 ATGTGAGGTTACATTGAACTTGTATATTCGGCTGCATGTGAG-GTTATATTGAACTTGTATATTC
1 ATGTGAGATTATATTGAACTTGTATATTCGGC--CATATGAGAGTTATATTGAACTTGAACATTA
27119901 GGTTAC
64 GGTTAC
* *
27119907 ATGTGAGATTATATTGAATTTGTATATTCGGCCATATGAGATGTTTTATTGAACTTGAACATTAG
1 ATGTGAGATTATATTGAACTTGTATATTCGGCCATATGAGA-GTTATATTGAACTTGAACATTAG
27119972 GTTAC
65 GTTAC
*
27119977 ATGTGATGA-TATATTGAACTTATATATTC
1 ATGTGA-GATTATATTGAACTTGTATATTC
27120006 AGTATAATGA
Statistics
Matches: 86, Mismatches: 10, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
68 7 0.08
70 77 0.90
71 2 0.02
ACGTcount: A:0.28, C:0.09, G:0.21, T:0.41
Consensus pattern (69 bp):
ATGTGAGATTATATTGAACTTGTATATTCGGCCATATGAGAGTTATATTGAACTTGAACATTAGG
TTAC
Found at i:27124793 original size:27 final size:26
Alignment explanation
Indices: 27124754--27124834 Score: 90
Period size: 27 Copynumber: 3.0 Consensus size: 26
27124744 AGCATGGCTG
* *
27124754 CCAGAACTGATATTGTGACAGAGTCA
1 CCAGAACAGATATTGTGACAGAGCCA
*
27124780 CCAGATACAGATATTGTGGCAGAGCCA
1 CCAGA-ACAGATATTGTGACAGAGCCA
* * *
27124807 CCAGAATCAGATAATGTGGCAAAGCCA
1 CCAGAA-CAGATATTGTGACAGAGCCA
27124834 C
1 C
27124835 TTAACAGAAT
Statistics
Matches: 48, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
26 6 0.12
27 42 0.88
ACGTcount: A:0.36, C:0.22, G:0.23, T:0.19
Consensus pattern (26 bp):
CCAGAACAGATATTGTGACAGAGCCA
Found at i:27125345 original size:27 final size:28
Alignment explanation
Indices: 27125283--27125346 Score: 69
Period size: 27 Copynumber: 2.4 Consensus size: 28
27125273 CATTCACTTG
*
27125283 CCCACAAGGGCAAAACAGTCATTTAACA
1 CCCACAAGGGCAAAACAGTAATTTAACA
* ** *
27125311 CCC-TAAGGGCAAAATGGTAATTTTAC-
1 CCCACAAGGGCAAAACAGTAATTTAACA
27125337 CCCACAAGGG
1 CCCACAAGGG
27125347 TATCTCGGTA
Statistics
Matches: 29, Mismatches: 6, Indels: 3
0.76 0.16 0.08
Matches are distributed among these distances:
26 3 0.10
27 23 0.79
28 3 0.10
ACGTcount: A:0.38, C:0.27, G:0.19, T:0.17
Consensus pattern (28 bp):
CCCACAAGGGCAAAACAGTAATTTAACA
Found at i:27125356 original size:27 final size:27
Alignment explanation
Indices: 27125326--27125655 Score: 428
Period size: 27 Copynumber: 12.3 Consensus size: 27
27125316 AGGGCAAAAT
* * * *
27125326 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
27125353 GGTAATTCTACCCTACA-GGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
** * *
27125379 ATTAATTCTACCCCATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
27125406 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
27125433 GGTAATTCTACCTTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
27125460 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
27125487 GGTAATTCTACCTTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
*
27125514 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
27125541 GATATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
27125568 GGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
27125595 GGTAATTCTACCCTATAGTGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
27125622 AGTAATTCTACCCTAAAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
27125649 AGTAATT
1 GGTAATT
27125656 TTACAAATCG
Statistics
Matches: 267, Mismatches: 35, Indels: 2
0.88 0.12 0.01
Matches are distributed among these distances:
26 21 0.08
27 246 0.92
ACGTcount: A:0.26, C:0.20, G:0.18, T:0.36
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:27125672 original size:27 final size:27
Alignment explanation
Indices: 27125639--27125818 Score: 172
Period size: 27 Copynumber: 6.7 Consensus size: 27
27125629 CTACCCTAAA
27125639 AGGGTATTTCAGTAATTTTACAAATCG
1 AGGGTATTTCAGTAATTTTACAAATCG
*
27125666 AGTGTATTTCAGTAATTTTACAAA-CTG
1 AGGGTATTTCAGTAATTTTACAAATC-G
* **
27125693 AGGGTATTTCGGTAATTTTACAAATTA
1 AGGGTATTTCAGTAATTTTACAAATCG
*
27125720 AGGGTATTTTAGTAATTTTAC-AATCG
1 AGGGTATTTCAGTAATTTTACAAATCG
* * * *
27125746 ACGATATTTC-GATAATTTTATAAACCG
1 AGGGTATTTCAG-TAATTTTACAAATCG
* * *
27125773 GGGGTACTTT-GGTAATTTTACAACT-G
1 AGGGTA-TTTCAGTAATTTTACAAATCG
* *
27125799 GGGGTATTTTAGTAATTTTA
1 AGGGTATTTCAGTAATTTTA
27125819 GTAAACTAAA
Statistics
Matches: 125, Mismatches: 21, Indels: 15
0.78 0.13 0.09
Matches are distributed among these distances:
25 4 0.03
26 35 0.28
27 82 0.66
28 4 0.03
ACGTcount: A:0.31, C:0.09, G:0.19, T:0.41
Consensus pattern (27 bp):
AGGGTATTTCAGTAATTTTACAAATCG
Found at i:27125673 original size:54 final size:52
Alignment explanation
Indices: 27125343--27125736 Score: 355
Period size: 54 Copynumber: 7.3 Consensus size: 52
27125333 TTACCCCACA
* * **
27125343 AGGGTATCTCGGTAATTCTACCCTAC-AGGGTATTTCATTAATTCTACCCCAT-
1 AGGGTATTTCAGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTA--CCATC
* *
27125395 AGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCTTAC
1 A-GGGTATTTCAGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCAT-C
* *
27125449 AGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCTTAC
1 A-GGGTATTTCAGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCAT-C
* * * * *
27125503 AGGGGTATTTTAGTAATTCTACCCTACAGGGGTATTTCGATATTTCTACCCTAC
1 A-GGGTATTTCAGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCAT-C
*
27125557 AAGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTAT-
1 -AGGGTATTTCAGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTA-CC-ATC
* * * * *
27125611 AGTGGTATTTTAGTAATTCTACCCTAAAAGGGTATTTCAGTAATTTTACAAATC
1 AG-GGTATTTCAGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTAC-CATC
* * ** * * * *
27125665 GAGTGTATTTCAGTAATTTTA-CAAACTGAGGGTATTTCGGTAATTTTACAAATTA
1 -AGGGTATTTCAGTAATTCTACCCTAC-AAGGGTATTTCGGTAATTCTAC-CA-TC
*
27125720 AGGGTATTTTAGTAATT
1 AGGGTATTTCAGTAATT
27125737 TTACAATCGA
Statistics
Matches: 296, Mismatches: 33, Indels: 24
0.84 0.09 0.07
Matches are distributed among these distances:
52 4 0.01
53 30 0.10
54 255 0.86
55 6 0.02
56 1 0.00
ACGTcount: A:0.27, C:0.18, G:0.18, T:0.37
Consensus pattern (52 bp):
AGGGTATTTCAGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCATC
Found at i:27125699 original size:81 final size:79
Alignment explanation
Indices: 27125614--27125818 Score: 200
Period size: 80 Copynumber: 2.6 Consensus size: 79
27125604 ACCCTATAGT
* * *
27125614 GGTATTTTAGTAATTCTACCCTAA-AAGGGTATTTCAGTAATTTTACAAATCGA-GTGTATTTC-
1 GGTATTTTGGTAATTCTA--CAAATAAGGGTATTTCAGTAATTTTAC-AATCGACG-ATATTTCG
*
27125676 AGTAATTTTACAAACTGAG
62 A-TAATTTTACAAACCGAG
* * *
27125695 GGTATTTCGGTAATTTTACAAATTAAGGGTATTTTAGTAATTTTACAATCGACGATATTTCGATA
1 GGTATTTTGGTAATTCTACAAA-TAAGGGTATTTCAGTAATTTTACAATCGACGATATTTCGATA
* *
27125760 ATTTTATAAACCGGG
65 ATTTTACAAACCGAG
* * * ** *
27125775 GGTACTTTGGTAATTTTACAACTGGGGGTATTTTAGTAATTTTA
1 GGTATTTTGGTAATTCTACAAATAAGGGTATTTCAGTAATTTTA
27125819 GTAAACTAAA
Statistics
Matches: 106, Mismatches: 14, Indels: 10
0.82 0.11 0.08
Matches are distributed among these distances:
79 23 0.22
80 45 0.42
81 38 0.36
ACGTcount: A:0.31, C:0.10, G:0.18, T:0.40
Consensus pattern (79 bp):
GGTATTTTGGTAATTCTACAAATAAGGGTATTTCAGTAATTTTACAATCGACGATATTTCGATAA
TTTTACAAACCGAG
Found at i:27125737 original size:54 final size:54
Alignment explanation
Indices: 27125639--27125818 Score: 195
Period size: 53 Copynumber: 3.4 Consensus size: 54
27125629 CTACCCTAAA
* *
27125639 AGGGTATTTCAGTAATTTTACAAATCGAGTGTATTTCAGTAATTTTACAAACTG
1 AGGGTATTTCAGTAATTTTACAAATCGAGGGTATTTTAGTAATTTTACAAACTG
* ** *
27125693 AGGGTATTTCGGTAATTTTACAAATTAAGGGTATTTTAGTAATTTTACAATC-G
1 AGGGTATTTCAGTAATTTTACAAATCGAGGGTATTTTAGTAATTTTACAAACTG
* * * * * * *
27125746 ACGATATTTC-GATAATTTTATAAACCGGGGGTACTTTGGTAATTTTAC-AACTG
1 AGGGTATTTCAG-TAATTTTACAAATCGAGGGTATTTTAGTAATTTTACAAACTG
* *
27125799 GGGGTATTTTAGTAATTTTA
1 AGGGTATTTCAGTAATTTTA
27125819 GTAAACTAAA
Statistics
Matches: 103, Mismatches: 20, Indels: 7
0.79 0.15 0.05
Matches are distributed among these distances:
52 3 0.03
53 53 0.51
54 47 0.46
ACGTcount: A:0.31, C:0.09, G:0.19, T:0.41
Consensus pattern (54 bp):
AGGGTATTTCAGTAATTTTACAAATCGAGGGTATTTTAGTAATTTTACAAACTG
Found at i:27127568 original size:39 final size:39
Alignment explanation
Indices: 27127516--27127608 Score: 159
Period size: 39 Copynumber: 2.4 Consensus size: 39
27127506 AACTTTAAGC
*
27127516 CCGGATATATTTCCAGCACATAACCTGCGGACCTCAAGT
1 CCGGATATGTTTCCAGCACATAACCTGCGGACCTCAAGT
* *
27127555 CCGGATATGTTTCCAGCACGTAGCCTGCGGACCTCAAGT
1 CCGGATATGTTTCCAGCACATAACCTGCGGACCTCAAGT
27127594 CCGGATATGTTTCCA
1 CCGGATATGTTTCCA
27127609 AGTATCATGC
Statistics
Matches: 51, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 51 1.00
ACGTcount: A:0.24, C:0.30, G:0.22, T:0.25
Consensus pattern (39 bp):
CCGGATATGTTTCCAGCACATAACCTGCGGACCTCAAGT
Found at i:27131297 original size:20 final size:20
Alignment explanation
Indices: 27131269--27131309 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
27131259 CGGGTCTATA
*
27131269 ATCGGTACGAAGCCCACAAT
1 ATCGATACGAAGCCCACAAT
27131289 ATCGATACGAAGCCCACAAT
1 ATCGATACGAAGCCCACAAT
27131309 A
1 A
27131310 ACGGCACACA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.39, C:0.29, G:0.17, T:0.15
Consensus pattern (20 bp):
ATCGATACGAAGCCCACAAT
Found at i:27131392 original size:20 final size:20
Alignment explanation
Indices: 27131367--27131407 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
27131357 CGGGTCTATA
*
27131367 ATCGATACGAAGCCTACAAT
1 ATCGATACGAAGCCCACAAT
27131387 ATCGATACGAAGCCCACAAT
1 ATCGATACGAAGCCCACAAT
27131407 A
1 A
27131408 ATGGCGCACA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.41, C:0.27, G:0.15, T:0.17
Consensus pattern (20 bp):
ATCGATACGAAGCCCACAAT
Found at i:27131418 original size:98 final size:98
Alignment explanation
Indices: 27131247--27131485 Score: 379
Period size: 98 Copynumber: 2.4 Consensus size: 98
27131237 CGTGGCACAA
* *
27131247 AGCCATCGATAACGGGTCTATAATCGGTACGAAGCCCACAATATCGATACGAAGCCCACAATAAC
1 AGCCATTGATAACGGGTCTATAATCGGTACGAAGCCTACAATATCGATACGAAGCCCACAATAAC
* *
27131312 GGCACACAGCCTTCGGTAACATGATCGGCAATC
66 GGCACACAGCCTTCGGTAACACGATCGACAATC
* *
27131345 AGCCATTGATAACGGGTCTATAATCGATACGAAGCCTACAATATCGATACGAAGCCCACAATAAT
1 AGCCATTGATAACGGGTCTATAATCGGTACGAAGCCTACAATATCGATACGAAGCCCACAATAAC
* * *
27131410 GGCGCACAGCTTTCGGTAACACGATCGACACTC
66 GGCACACAGCCTTCGGTAACACGATCGACAATC
* *
27131443 AGCCATTGATAACGGGTCTATAATCGGCACCAAGCCTACAATA
1 AGCCATTGATAACGGGTCTATAATCGGTACGAAGCCTACAATA
27131486 ACGACACACA
Statistics
Matches: 129, Mismatches: 12, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
98 129 1.00
ACGTcount: A:0.34, C:0.27, G:0.20, T:0.19
Consensus pattern (98 bp):
AGCCATTGATAACGGGTCTATAATCGGTACGAAGCCTACAATATCGATACGAAGCCCACAATAAC
GGCACACAGCCTTCGGTAACACGATCGACAATC
Found at i:27131872 original size:27 final size:27
Alignment explanation
Indices: 27131842--27132145 Score: 331
Period size: 27 Copynumber: 11.3 Consensus size: 27
27131832 GGGGCAAAAT
* * * *
27131842 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
27131869 GGTAATTCTACTCC-ATAGGGGTATTTC
1 GGTAATTCTAC-CCTACAGGGGTATTTC
** * *
27131896 AATAATTCTACCCCATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
27131923 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
27131950 GATAATTCTACCTTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
27131977 AGTAATTCTACCTTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
27132004 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
27132031 GGTAGTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
27132058 TGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * ** *
27132085 TGTAATTCTACCCTATACTGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
27132112 AGTAATTCTACGCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
27132139 AGTAATT
1 GGTAATT
27132146 TTATAAATCG
Statistics
Matches: 242, Mismatches: 33, Indels: 4
0.87 0.12 0.01
Matches are distributed among these distances:
26 2 0.01
27 238 0.98
28 2 0.01
ACGTcount: A:0.25, C:0.20, G:0.18, T:0.37
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:27132159 original size:27 final size:27
Alignment explanation
Indices: 27132129--27132306 Score: 118
Period size: 27 Copynumber: 6.7 Consensus size: 27
27132119 CTACGCTACA
27132129 AGGGTATTTCAGTAATTTTATAAATCG
1 AGGGTATTTCAGTAATTTTATAAATCG
* *
27132156 AGGGCATTTCAGTAATTTTGCAT-ACT-G
1 AGGGTATTTCAGTAATTTT--ATAAATCG
* * * * *
27132183 AGGGTATGTCGGTAATTTTACAAGTCA
1 AGGGTATTTCAGTAATTTTATAAATCG
*
27132210 AGGGTATTTTAGTAATTTTA-AAATCG
1 AGGGTATTTCAGTAATTTTATAAATCG
* * *
27132236 ACGGTATTT-TGATAATTTTATAAACCG
1 AGGGTATTTCAG-TAATTTTATAAATCG
* * *
27132263 -GGTGTACTTT-GGTAATTTTACAACT-G
1 AGG-GTA-TTTCAGTAATTTTATAAATCG
* *
27132289 GGGGTATTTTAGTAATTT
1 AGGGTATTTCAGTAATTT
27132307 CAGTAAACTA
Statistics
Matches: 119, Mismatches: 22, Indels: 21
0.73 0.14 0.13
Matches are distributed among these distances:
25 5 0.04
26 34 0.29
27 72 0.61
28 6 0.05
29 2 0.02
ACGTcount: A:0.29, C:0.09, G:0.21, T:0.40
Consensus pattern (27 bp):
AGGGTATTTCAGTAATTTTATAAATCG
Found at i:27134503 original size:27 final size:26
Alignment explanation
Indices: 27134464--27134544 Score: 81
Period size: 27 Copynumber: 3.0 Consensus size: 26
27134454 AGCATGGTTG
* *
27134464 CCAGAACTGATATTGTGACAGAGTCA
1 CCAGAACAGATATTGTGACAGAGCCA
* *
27134490 CCAGATACAGATATTGGGGCAGAGCCA
1 CCAGA-ACAGATATTGTGACAGAGCCA
* * *
27134517 CCAGAATCAGATAATGTGGCAAAGCCA
1 CCAGAA-CAGATATTGTGACAGAGCCA
27134544 C
1 C
27134545 TTAACAGAAT
Statistics
Matches: 46, Mismatches: 7, Indels: 3
0.82 0.12 0.05
Matches are distributed among these distances:
26 6 0.13
27 40 0.87
ACGTcount: A:0.36, C:0.22, G:0.25, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATATTGTGACAGAGCCA
Found at i:27134737 original size:98 final size:98
Alignment explanation
Indices: 27134566--27134804 Score: 343
Period size: 98 Copynumber: 2.4 Consensus size: 98
27134556 CGTGGCACAA
* * * * *
27134566 AGCCATCGATAACAGGTCTATAATCGGCACGAAGCCCACAATATCGATACGAAGCCCACAGTGAC
1 AGCCATTGATAACGGGTCTATAATCGGCACGAAGCCTACAATATCGATACGAAGCCCACAATAAC
* *
27134631 GGCACACAGCCTTCTGTAACATGATCGGAACTC
66 GGCACACAGCCTTCGGTAACACGATCGGAACTC
* *
27134664 AGCCATTGGTAACGGGTCTATAATCGGCACGAAGCCTACAATATCGATACGAAGCCCACAATAAT
1 AGCCATTGATAACGGGTCTATAATCGGCACGAAGCCTACAATATCGATACGAAGCCCACAATAAC
* *
27134729 GGCGCACAGCCTTCGGTAACACGATCGGCACTC
66 GGCACACAGCCTTCGGTAACACGATCGGAACTC
* * * *
27134762 AGCCATTGATAACGTGTCTATAATCAGCACCAAGCCTTCAATA
1 AGCCATTGATAACGGGTCTATAATCGGCACGAAGCCTACAATA
27134805 ACGGCACACA
Statistics
Matches: 125, Mismatches: 16, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
98 125 1.00
ACGTcount: A:0.32, C:0.28, G:0.20, T:0.19
Consensus pattern (98 bp):
AGCCATTGATAACGGGTCTATAATCGGCACGAAGCCTACAATATCGATACGAAGCCCACAATAAC
GGCACACAGCCTTCGGTAACACGATCGGAACTC
Found at i:27135192 original size:27 final size:27
Alignment explanation
Indices: 27135162--27135383 Score: 286
Period size: 27 Copynumber: 8.2 Consensus size: 27
27135152 GGGCAAAATG
* *
27135162 GTAATTTTACCCCACAAGGGTATTTCA
1 GTAATTCTACCCTACAAGGGTATTTCA
*
27135189 GTAATTCTACCCTAC-AGCGGTATTTCG
1 GTAATTCTACCCTACAAG-GGTATTTCA
* * *
27135216 GTAATTCTACCTTACAGGGGTATTTTA
1 GTAATTCTACCCTACAAGGGTATTTCA
* *
27135243 GTAATTCTACCCTACAGGGGTATTTCG
1 GTAATTCTACCCTACAAGGGTATTTCA
* *
27135270 GTATTTCTACCCTACAAGGGTATTTCG
1 GTAATTCTACCCTACAAGGGTATTTCA
*
27135297 GTAATTCTACCCTACAAGGGTATTTCG
1 GTAATTCTACCCTACAAGGGTATTTCA
* *
27135324 GTAATTCTACCCTA-TAGTGGTATTTTA
1 GTAATTCTACCCTACAAG-GGTATTTCA
*
27135351 GTAATTCTACCCTACAAGGGTATTTTA
1 GTAATTCTACCCTACAAGGGTATTTCA
27135378 GTAATT
1 GTAATT
27135384 TTATAAATCG
Statistics
Matches: 174, Mismatches: 17, Indels: 8
0.87 0.09 0.04
Matches are distributed among these distances:
26 4 0.02
27 167 0.96
28 3 0.02
ACGTcount: A:0.26, C:0.20, G:0.18, T:0.37
Consensus pattern (27 bp):
GTAATTCTACCCTACAAGGGTATTTCA
Found at i:27135398 original size:81 final size:81
Alignment explanation
Indices: 27135162--27135410 Score: 259
Period size: 81 Copynumber: 3.1 Consensus size: 81
27135152 GGGCAAAATG
* * * * *
27135162 GTAATTTTACCCCACAAGGGTATTTCAGTAATTCTACCCTAC-AGCGGTATTTCGGTAATTCTAC
1 GTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAAG-GGTATTTCAGTAATTCTAA
** * *
27135226 CTTACAGGGGTATTTTA
65 AATACAAGGGTATTTCA
* * * **
27135243 GTAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCGGTAATTCTACC
1 GTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTAAA
* *
27135308 CTACAAGGGTATTTCG
66 ATACAAGGGTATTTCA
* * * * *
27135324 GTAATTCTACCCTATAGTGGTATTTTAGTAATTCTACCCTACAAGGGTATTTTAGTAATTTTATA
1 GTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTA-A
*
27135389 AAT-CGAGGGTATTTCA
65 AATACAAGGGTATTTCA
*
27135405 ATAATT
1 GTAATT
27135411 TTGCAAACTG
Statistics
Matches: 143, Mismatches: 23, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
81 140 0.98
82 3 0.02
ACGTcount: A:0.27, C:0.18, G:0.17, T:0.37
Consensus pattern (81 bp):
GTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTAAA
ATACAAGGGTATTTCA
Found at i:27135400 original size:54 final size:54
Alignment explanation
Indices: 27135178--27135410 Score: 253
Period size: 54 Copynumber: 4.3 Consensus size: 54
27135168 TTACCCCACA
27135178 AGGGTATTTCAGTAATTCTACCCTAC-AGCGGTATTTCGGTAATTCTAC-CT-TAC
1 AGGGTATTTCAGTAATTCTACCCTACAAG-GGTATTTCGGTAATTCTACTCTAT-C
* * * *
27135231 AGGGGTATTTTAGTAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCCTA-C
1 A-GGGTATTTCAGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACTCTATC
* *
27135285 AAGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTAT-
1 -AGGGTATTTCAGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACTCTATC
* ** * **
27135339 AGTGGTATTTTAGTAATTCTACCCTACAAGGGTATTTTAGTAATTTTA-TAAATC
1 AG-GGTATTTCAGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACTCTATC
*
27135393 GAGGGTATTTCAATAATT
1 -AGGGTATTTCAGTAATT
27135411 TTGCAAACTG
Statistics
Matches: 154, Mismatches: 17, Indels: 17
0.82 0.09 0.09
Matches are distributed among these distances:
53 5 0.03
54 143 0.93
55 6 0.04
ACGTcount: A:0.27, C:0.18, G:0.18, T:0.38
Consensus pattern (54 bp):
AGGGTATTTCAGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACTCTATC
Found at i:27135480 original size:26 final size:27
Alignment explanation
Indices: 27135367--27135546 Score: 158
Period size: 27 Copynumber: 6.7 Consensus size: 27
27135357 CTACCCTACA
* *
27135367 AGGGTATTTTAGTAATTTTATAAATC-G
1 AGGGTATTTCAGTAATTTTA-CAATCTG
* * *
27135394 AGGGTATTTCAATAATTTTGCAAACTG
1 AGGGTATTTCAGTAATTTTACAATCTG
27135421 AGGGTATTTC-GATAATTTTACAAATC-G
1 AGGGTATTTCAG-TAATTTTAC-AATCTG
*
27135448 AGCGTATTTCAGTAATTTTACAATC-G
1 AGGGTATTTCAGTAATTTTACAATCTG
* * *
27135474 ACGGTATTTC-GATAATTTTATAAACTG
1 AGGGTATTTCAG-TAATTTTACAATCTG
* *
27135501 GGGGTACTTT-GGTAATTTTACAA-CTG
1 AGGGTA-TTTCAGTAATTTTACAATCTG
*
27135527 GGGGTATTTCAGTAATTTTA
1 AGGGTATTTCAGTAATTTTA
27135547 GTAAACTAAA
Statistics
Matches: 127, Mismatches: 17, Indels: 19
0.78 0.10 0.12
Matches are distributed among these distances:
25 4 0.03
26 45 0.35
27 70 0.55
28 8 0.06
ACGTcount: A:0.31, C:0.10, G:0.19, T:0.40
Consensus pattern (27 bp):
AGGGTATTTCAGTAATTTTACAATCTG
Found at i:27135516 original size:53 final size:54
Alignment explanation
Indices: 27135379--27135553 Score: 173
Period size: 53 Copynumber: 3.3 Consensus size: 54
27135369 GGTATTTTAG
* * * *
27135379 TAATTTTATAAA-TCGAGGGTATTTCAATAATTTTGCAAACTGAGGGTATTTCGA
1 TAATTTTATAAACTCGAGCGTATTTCAGTAATTTTAC-AACTGACGGTATTTCGA
*
27135433 TAATTTTACAAA-TCGAGCGTATTTCAGTAATTTTACAA-TCGACGGTATTTCGA
1 TAATTTTATAAACTCGAGCGTATTTCAGTAATTTTACAACT-GACGGTATTTCGA
* * * **
27135486 TAATTTTATAAACT-GGGGGTACTTT-GGTAATTTTACAACTGGGGGTATTTC-A
1 TAATTTTATAAACTCGAGCGTA-TTTCAGTAATTTTACAACTGACGGTATTTCGA
27135538 GTAATTTTAGTAAACT
1 -TAATTTTA-TAAACT
27135554 AAAGTATTCT
Statistics
Matches: 104, Mismatches: 11, Indels: 12
0.82 0.09 0.09
Matches are distributed among these distances:
52 2 0.02
53 59 0.57
54 43 0.41
ACGTcount: A:0.31, C:0.11, G:0.18, T:0.39
Consensus pattern (54 bp):
TAATTTTATAAACTCGAGCGTATTTCAGTAATTTTACAACTGACGGTATTTCGA
Found at i:27140058 original size:35 final size:35
Alignment explanation
Indices: 27140016--27140224 Score: 220
Period size: 35 Copynumber: 6.0 Consensus size: 35
27140006 ATAGGTAAGG
27140016 ACATGTGAGGTTATATTGAACTTGTATATTCGGCT
1 ACATGTGAGGTTATATTGAACTTGTATATTCGGCT
* * * **
27140051 GCATGTGAGGTTATATTGAACTTGTGTATTTGATT
1 ACATGTGAGGTTATATTGAACTTGTATATTCGGCT
* * *
27140086 ACATGTGAGCTTATATTGAACTTGTATATCCGGTT
1 ACATGTGAGGTTATATTGAACTTGTATATTCGGCT
* * *
27140121 ACATGTGAGATTATATTGAATTTGTATATTCGGCC
1 ACATGTGAGGTTATATTGAACTTGTATATTCGGCT
* * * * * * * *
27140156 ATATGAGATGTTTTATTGAACTTGAACATTAGGTT
1 ACATGTGAGGTTATATTGAACTTGTATATTCGGCT
* * *
27140191 ACATGTGATGATATATTGAACTTATATATTCGGC
1 ACATGTGAGGTTATATTGAACTTGTATATTCGGC
27140225 CATATGAAAT
Statistics
Matches: 138, Mismatches: 36, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
35 138 1.00
ACGTcount: A:0.28, C:0.10, G:0.21, T:0.41
Consensus pattern (35 bp):
ACATGTGAGGTTATATTGAACTTGTATATTCGGCT
Found at i:27140173 original size:105 final size:104
Alignment explanation
Indices: 27140016--27140219 Score: 259
Period size: 105 Copynumber: 1.9 Consensus size: 104
27140006 ATAGGTAAGG
* * ***
27140016 ACATGTGAGGTTATATTGAACTTGTATATTCGGCTGCATGTGAGGTTATATTGAACTTGTGTATT
1 ACATGTGAGATTATATTGAACTTGTATATTCGGC-GCATATGAGGTTATATTGAACTTGAACATT
* * *
27140081 TGATTACATGTGA-GCTTATATTGAACTTGTATATCCGGTT
65 AGATTACATGTGATG-ATATATTGAACTTATATATCCGGTT
* *
27140121 ACATGTGAGATTATATTGAATTTGTATATTCGGC-CATATGAGATGTTTTATTGAACTTGAACAT
1 ACATGTGAGATTATATTGAACTTGTATATTCGGCGCATATGAG--GTTATATTGAACTTGAACAT
*
27140185 TAGGTTACATGTGATGATATATTGAACTTATATAT
64 TAGATTACATGTGATGATATATTGAACTTATATAT
27140220 TCGGCCATAT
Statistics
Matches: 85, Mismatches: 11, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
103 7 0.08
105 77 0.91
106 1 0.01
ACGTcount: A:0.28, C:0.09, G:0.21, T:0.42
Consensus pattern (104 bp):
ACATGTGAGATTATATTGAACTTGTATATTCGGCGCATATGAGGTTATATTGAACTTGAACATTA
GATTACATGTGATGATATATTGAACTTATATATCCGGTT
Found at i:27152906 original size:48 final size:48
Alignment explanation
Indices: 27152789--27153063 Score: 374
Period size: 48 Copynumber: 5.8 Consensus size: 48
27152779 ACCGTGCTGA
* * *
27152789 ATGTGCCTGTGTAAGACCGTGTCTGCGACATGGAATCGGCGATGA-AT
1 ATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATAT
* * * *
27152836 ATGTACCTGTGTAAGACTATGTCTAGGACATGGCATCAGCGATGATAT
1 ATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATAT
* *
27152884 GTGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATAT
1 ATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATAT
* * *
27152932 ATGTGCATGTGCAAGACCATGTCTAGGACATGGCATCGGCGATGATAT
1 ATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATAT
** *
27152980 ATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCAAC-AGTGATGT
1 ATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGCGA-TGATAT
* *
27153028 ATGTGCCCGTGTAAGACTATGTCTGGGACATGGCAT
1 ATGTGCCTGTGTAAGACCATGTCTGGGACATGGCAT
27153064 TGGTACTTTA
Statistics
Matches: 200, Mismatches: 26, Indels: 3
0.87 0.11 0.01
Matches are distributed among these distances:
47 39 0.19
48 161 0.81
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.27
Consensus pattern (48 bp):
ATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATAT
Found at i:27161119 original size:48 final size:48
Alignment explanation
Indices: 27161046--27161369 Score: 506
Period size: 48 Copynumber: 6.8 Consensus size: 48
27161036 ACCGTGCTGA
*
27161046 ATGTGCCTGTGTAAGACCATATCTGGGACATGGCATCGGCGATGATAT
1 ATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATAT
*
27161094 ATGTGCATGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATAT
1 ATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATAT
* * ** *
27161142 GTGTGCCAGTGTAAGACCATGTCTAAGACATGGCATCGGTGATGATAT
1 ATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATAT
27161190 ATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATAT
1 ATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATAT
27161238 ATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATAT
1 ATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATAT
* *
27161286 ATGTGCCTTTGTAAGACCATGTCTGGGACATGGCATCAGCGATGATAT
1 ATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATAT
* ** * *
27161334 GTG-GATTCATGTAAGACCATGTCGGGGACATGGCAT
1 ATGTGCCT-GTGTAAGACCATGTCTGGGACATGGCAT
27161370 AGGTACTTTA
Statistics
Matches: 255, Mismatches: 20, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
47 2 0.01
48 253 0.99
ACGTcount: A:0.25, C:0.18, G:0.30, T:0.27
Consensus pattern (48 bp):
ATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATAT
Found at i:27165005 original size:27 final size:27
Alignment explanation
Indices: 27164974--27165124 Score: 169
Period size: 27 Copynumber: 5.6 Consensus size: 27
27164964 TAAATTGTAC
*
27164974 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* * *
27165001 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGAATTGACTATGT
* *
27165027 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGAATTGACTATGT
* *
27165055 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-ATTGACTATGT
* * *
27165083 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAATTGACTATGT
*
27165110 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
27165125 GGCTCAATAT
Statistics
Matches: 104, Mismatches: 17, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
27 81 0.78
28 23 0.22
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAATTGACTATGT
Found at i:27165088 original size:82 final size:81
Alignment explanation
Indices: 27164975--27165124 Score: 230
Period size: 82 Copynumber: 1.8 Consensus size: 81
27164965 AAATTGTACA
*
27164975 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATAT-ATAGCACTAAGTG
27165039 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** * *
27165056 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATATATAGCACTAAGTG
27165121 TGCG
65 TGCG
27165125 GGCTCAATAT
Statistics
Matches: 62, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
81 17 0.27
82 45 0.73
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATATATAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:27165115 original size:55 final size:53
Alignment explanation
Indices: 27164974--27165124 Score: 167
Period size: 55 Copynumber: 2.8 Consensus size: 53
27164964 TAAATTGTAC
* *
27164974 AGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG
1 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAAATGAATATG
* ** ** *
27165027 ATGCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGTTTGACTATG
1 A-GCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGA-AATGAATATG
* * * *
27165082 TAGCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 -AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCG
27165125 GGCTCAATAT
Statistics
Matches: 81, Mismatches: 14, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
53 1 0.01
54 38 0.47
55 41 0.51
56 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (53 bp):
AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAAATGAATATG
Found at i:27165135 original size:27 final size:27
Alignment explanation
Indices: 27165056--27165135 Score: 70
Period size: 27 Copynumber: 2.9 Consensus size: 27
27165046 TGACCATGCG
* * * *
27165056 GCACTAAGTGTGCGAGTTTGACTATGTA
1 GCACTAAGTGTGCGAG-CTCAATATATA
* * *
27165084 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGAGCTCAATATATA
* *
27165111 GCACTGAGTGTGCGGGCTCAATATA
1 GCACTAAGTGTGCGAGCTCAATATA
27165136 CATTCGTGAA
Statistics
Matches: 45, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
27 29 0.64
28 16 0.36
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.30
Consensus pattern (27 bp):
GCACTAAGTGTGCGAGCTCAATATATA
Found at i:27173111 original size:27 final size:27
Alignment explanation
Indices: 27173080--27173257 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
27173070 TAAATTGTAC
27173080 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
27173107 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
27173133 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
27173161 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
27173189 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
27173216 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
27173243 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
27173258 GGCTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:27173194 original size:82 final size:81
Alignment explanation
Indices: 27173081--27173236 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
27173071 AAATTGTACA
* *
27173081 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
27173145 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
27173162 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
27173227 TGCGAGTTGA
65 TGCGAATTGA
27173237 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:27173248 original size:82 final size:81
Alignment explanation
Indices: 27173077--27173257 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
27173067 GATTAAATTG
* *
27173077 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
27173142 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
27173158 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
27173222 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
27173240 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
27173258 GGCTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:27173268 original size:27 final size:27
Alignment explanation
Indices: 27173162--27173268 Score: 70
Period size: 27 Copynumber: 3.9 Consensus size: 27
27173152 TGACCATGCG
* * * *
27173162 GCACTAAGTGTGCGAGTTTGACTATGTA
1 GCACTAAGTGTGCGAG-CTCAATATATA
** * * **
27173190 GCACTAAGTGTGCGATTTGATTACGTA
1 GCACTAAGTGTGCGAGCTCAATATATA
* * *
27173217 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGAGCTCAATATATA
* *
27173244 GCACTGAGTGTGCGGGCTCAATATA
1 GCACTAAGTGTGCGAGCTCAATATA
27173269 CATTCGTGAA
Statistics
Matches: 68, Mismatches: 11, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
27 53 0.78
28 15 0.22
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.31
Consensus pattern (27 bp):
GCACTAAGTGTGCGAGCTCAATATATA
Found at i:27174666 original size:22 final size:23
Alignment explanation
Indices: 27174641--27174686 Score: 76
Period size: 22 Copynumber: 2.0 Consensus size: 23
27174631 GTGTTGTCGA
27174641 CACATGGGCGTGT-CCCTGTTTC
1 CACATGGGCGTGTACCCTGTTTC
27174663 CACATGGGCGTGTAGCCCTGTTTC
1 CACATGGGCGTGTA-CCCTGTTTC
27174687 ATGAGAATTT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
22 13 0.59
24 9 0.41
ACGTcount: A:0.11, C:0.30, G:0.28, T:0.30
Consensus pattern (23 bp):
CACATGGGCGTGTACCCTGTTTC
Found at i:27177688 original size:93 final size:93
Alignment explanation
Indices: 27177559--27177731 Score: 283
Period size: 93 Copynumber: 1.9 Consensus size: 93
27177549 CGCCCATAAG
* * * * *
27177559 CGAACTCGGACTCAACTCAATGAGCTGGGGCGTTCGCATCCATAAGTGAACTCGGACTCAAGTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
27177624 ACGAGCTCGGATGCCTAGTTACATCTCT
66 ACGAGCTCGGATGCCTAGTTACATCTCT
*
27177652 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
27177717 ACGAGTTCGGATGCC
66 ACGAGCTCGGATGCC
27177732 CAAATATCCC
Statistics
Matches: 73, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.27, C:0.29, G:0.23, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGCTCGGATGCCTAGTTACATCTCT
Found at i:27177722 original size:46 final size:46
Alignment explanation
Indices: 27177552--27177727 Score: 178
Period size: 46 Copynumber: 3.8 Consensus size: 46
27177542 TGTAACCCGC
* * * * *
27177552 CCATAAGCGAACTCGGACTCAACTCAATGAGCTGGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
* *
27177598 CCATAAGTGAACTCGGACTCAAGTCAACGAGCTCGG--ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGC-A--T
* *** *
27177644 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
27177691 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
27177728 TGCCCAAATA
Statistics
Matches: 106, Mismatches: 17, Indels: 14
0.77 0.12 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
46 66 0.62
47 31 0.29
49 4 0.04
50 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Done.