Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold_5749
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 9917
ACGTcount: A:0.26, C:0.17, G:0.23, T:0.33
Found at i:6890 original size:607 final size:608
Alignment explanation
Indices: 2852--9854 Score: 12670
Period size: 604 Copynumber: 11.6 Consensus size: 608
2842 GGTCCTAATA
2852 AGTTTCCAATCTAGCATCTAGATGGCACCTTACGA-GCTCTATATGGTCATAAGTGTCATACTCT
1 AGTTTCCAATCTAGCATCTAGATGGCACCTTACGAGGCTCTATATGGTCATAAGTGTCATACTCT
2916 GTTATATTAGACTGAGTTGGGTGAGCGACGGGTTTTGGGTCCTGAGTTGGTTTCCGAGACTG-AG
66 GTTATATTAGACTGAGTTGGGTGAGCGACGGGTTTTGGGTCCTGAGTTGGTTTCCGAGACTGAAG
2980 ATAATGTTAGACTAATTTGGGATCGTCTGAAGGCGTCTTCTGATAGATAGAAGTCTTAT-CAAAT
131 ATAATGTTAGACTAATTTGGGATCGTCTGAAGGCGTCTTCTGATAGATAGAAGTCTTATGCAAAT
3044 CTGAAAATCAGAGATATCAAGTACTCTATGGGGGACTTTGTATTTCTTAA-GTAACTCCGTGG-A
196 CTGAAAATCAGAGATATCAAGTACTCTATGGGGGACTTTGTATTTCTTAAGGTAACTCCGTGGAA
3107 AAAGGTTCTACGGTTCGGTTGACCAAGTCCGCTCATTTTATTCCTGTTCAGATGGACTACTCTCT
261 AAAGGTTCTACGGTTCGGTTGACCAAGTCCGCTCATTTTATTCCTGTTCAGATGGACTACTCTCT
3172 GCAAAAGTTAGTGAAGCTCTACATTTCTGAGATTGTAAGACTGCATGGGGTTCCAATTTCAATAA
326 GCAAAAGTTAGTGAAGCTCTACATTTCTGAGATTGTAAGACTGCATGGGGTTCCAATTTCAATAA
3237 TCTCTGATATGGATCCTCTCTTCACTTCACGGTTCTAGAAGAAACTTCACAAGGCTCTGGGTTCG
391 TCTCTGATATGGATCCTCTCTTCACTTCACGGTTCTAGAAGAAACTTCACAAGGCTCTGGGTTCG
*
3302 AGATTGGACTTCAGTACTGCGTTCCATCCTCAGACCGATGGTCAATTTGAGAGGGTGATTCATAT
456 AGATTGAACTTCAGTACTGCGTTCCATCCTCAGACCGATGGTCAATTTGAGAGGGTGATTCATAT
3367 ACTA-AGGATATGATTTGGAGCTATGTGATTTATTTCTG-GGTAGTT-GGAGGATTTTTTACCGT
521 ACTAGAGGATATGATTTGGAGCTATGTGATTTATTTCTGAGGTAGTTGGGAGGATTTTTTACCGT
3429 TAGTTGAGTTCGCCTACAATAAC
586 TAGTTGAGTTCGCCTACAATAAC
3452 AG-TTCCAATCTAGCATCTAGATGGCACCTTACGAGGCTCTATATGGTCATAAGTGTCATACT-T
1 AGTTTCCAATCTAGCATCTAGATGGCACCTTACGAGGCTCTATATGGTCATAAGTGTCATACTCT
3515 GTTATATTAGACTGAGTTGGGTGAGCGACGGGTTTTGGGTCCTGAGTTGGTTTCCGAGACTGAAG
66 GTTATATTAGACTGAGTTGGGTGAGCGACGGGTTTTGGGTCCTGAGTTGGTTTCCGAGACTGAAG
3580 ATAATGTTAGACTAATTTGGGATCGTCTGAAGGCGTCTTCTGATAGATAGAAGTCTTATGCAAAT
131 ATAATGTTAGACTAATTTGGGATCGTCTGAAGGCGTCTTCTGATAGATAGAAGTCTTATGCAAAT
3645 CTGAAAATCAGAGATATCAAGTACTCTATGGGGGACTTTGTATTTCTTAAGGTAACTCCGTGGAA
196 CTGAAAATCAGAGATATCAAGTACTCTATGGGGGACTTTGTATTTCTTAAGGTAACTCCGTGGAA
3710 AAAGGTTCTACGGTTC-GTTGACCAAGTCCGCTCATTTTATTCCTGTTCAGATGGACTACTCTCT
261 AAAGGTTCTACGGTTCGGTTGACCAAGTCCGCTCATTTTATTCCTGTTCAGATGGACTACTCTCT
3774 GCAAAAGTTAGTGAAGCTCTACATTTCTGAGATTGTAAGACTGCATGGGGTTCCAATTTCAATAA
326 GCAAAAGTTAGTGAAGCTCTACATTTCTGAGATTGTAAGACTGCATGGGGTTCCAATTTCAATAA
3839 TCTCTGATATGGATCCTCTCTTCACTTCACGGTTCTAGAAGAAACTTCACAAGGCTCT-GGTTCG
391 TCTCTGATATGGATCCTCTCTTCACTTCACGGTTCTAGAAGAAACTTCACAAGGCTCTGGGTTCG
*
3903 AGATTGGACTTCAGTACTGCGTTCCATCCTCAGACCGATGGTCAATTTGAGAGGGTGATTCATAT
456 AGATTGAACTTCAGTACTGCGTTCCATCCTCAGACCGATGGTCAATTTGAGAGGGTGATTCATAT
3968 ACTAGAGGATATGATTTGGAGCTATGTGATTTATTTCTGAGGTAGTTGGGAGGATTTTTTACCGT
521 ACTAGAGGATATGATTTGGAGCTATGTGATTTATTTCTGAGGTAGTTGGGAGGATTTTTTACCGT
4033 TAGTTGAGTTCGCCTACAATAAC
586 TAGTTGAGTTCGCCTACAATAAC
4056 AGTTTCCAATCTAGCATCTAGATGGCACCTTACGAGGCTCTATATGGTCATAAGTGTCATACT-T
1 AGTTTCCAATCTAGCATCTAGATGGCACCTTACGAGGCTCTATATGGTCATAAGTGTCATACTCT
4120 GTTATATTAGACTGAGTTGGGTGAGCGACGGGTTTTGGGT-CTGAGTTGGTTTCCGAGACTGAAG
66 GTTATATTAGACTGAGTTGGGTGAGCGACGGGTTTTGGGTCCTGAGTTGGTTTCCGAGACTGAAG
4184 ATAATGTTAGACTAATTTGGGATCGTCTGAAGGCGTCTTCTGATAGATAGAAGTCTTATGC-AAT
131 ATAATGTTAGACTAATTTGGGATCGTCTGAAGGCGTCTTCTGATAGATAGAAGTCTTATGCAAAT
4248 CTGAAAATCAGAGATATCAAGTACTCTATGGGGGACTTTGTATTTCTTAA-GTAACTCCGTGGAA
196 CTGAAAATCAGAGATATCAAGTACTCTATGGGGGACTTTGTATTTCTTAAGGTAACTCCGTGGAA
4312 AAAGGTTCTACGGTTCGGTTGACCAAGTCCGCTCATTTTATTCCTGTTCAGATGGACTACTCTCT
261 AAAGGTTCTACGGTTCGGTTGACCAAGTCCGCTCATTTTATTCCTGTTCAGATGGACTACTCTCT
4377 GCAAAAGTTAGTGAAGCTCTACATTTCTGAGATTGTAAGACTGCATGGGGTTCCAATTTCAATAA
326 GCAAAAGTTAGTGAAGCTCTACATTTCTGAGATTGTAAGACTGCATGGGGTTCCAATTTCAATAA
4442 TCTCTGATATGGATCCTCTCTTCACTTCACGGTTCTAGAAGAAACTTCACAAGGCTCTGGGTTCG
391 TCTCTGATATGGATCCTCTCTTCACTTCACGGTTCTAGAAGAAACTTCACAAGGCTCTGGGTTCG
4507 AGATTGAACTTCAGTACTGCGTTCCATCCTCAGA--GATGGTC-ATTTGAGAGGGTGATTCATAT
456 AGATTGAACTTCAGTACTGCGTTCCATCCTCAGACCGATGGTCAATTTGAGAGGGTGATTCATAT
4569 ACTAGAGGATATGATTTGGAGCTATGTGATTTA-TTC-GAGGTAGTT-GGAGGATTTTTTACCGT
521 ACTAGAGGATATGATTTGGAGCTATGTGATTTATTTCTGAGGTAGTTGGGAGGATTTTTTACCGT
*
4631 TAGTTGAGTTCGCCTACAATAAT
586 TAGTTGAGTTCGCCTACAATAAC
4654 AGTTTCCAATCTAGCATCTAGATGGCACCTTACGAGGCTCTATATGGTCATAAGTGTCATACTCT
1 AGTTTCCAATCTAGCATCTAGATGGCACCTTACGAGGCTCTATATGGTCATAAGTGTCATACTCT
4719 GTTATATTAGACTGAGTTGGGTGAGCGACGGGTTTTGGGTCCTGAGTTGGTTTCCGAGACTGAAG
66 GTTATATTAGACTGAGTTGGGTGAGCGACGGGTTTTGGGTCCTGAGTTGGTTTCCGAGACTGAAG
4784 ATAATGTTAGACTAATTTGGGATCGTCTGAAGGCGTCTTCTGATAGATAGAAGTCTTATGCAAAT
131 ATAATGTTAGACTAATTTGGGATCGTCTGAAGGCGTCTTCTGATAGATAGAAGTCTTATGCAAAT
4849 CTGAAAATCAGAGATATCAAGTACTCTATGGGGGACTTTGTATTTCTTAAGGTAACTCCGTGG-A
196 CTGAAAATCAGAGATATCAAGTACTCTATGGGGGACTTTGTATTTCTTAAGGTAACTCCGTGGAA
4913 AAAGGTTCTACGGTTCGGTTGACCAAGTCCGCTCATTTTATTCCTGTTCAGATGGACTACTCTCT
261 AAAGGTTCTACGGTTCGGTTGACCAAGTCCGCTCATTTTATTCCTGTTCAGATGGACTACTCTCT
4978 GCAAAAGTTAGTGAAGCTCTACATTTCTGAGATTGTAAGACTGCATGGGGTTCCAATTTCAATAA
326 GCAAAAGTTAGTGAAGCTCTACATTTCTGAGATTGTAAGACTGCATGGGGTTCCAATTTCAATAA
5043 TCTCTGATATGGATCCTCTCTTCACTTCACGGTTCTAGAAGAAACTTCACAAGGCTCTGGG-TCG
391 TCTCTGATATGGATCCTCTCTTCACTTCACGGTTCTAGAAGAAACTTCACAAGGCTCTGGGTTCG
5107 AGATTG-ACTTCAGTACTGCGTTCCATCCTCAGACCGATGGTCAATTTGAGAGGGTGATTCATAT
456 AGATTGAACTTCAGTACTGCGTTCCATCCTCAGACCGATGGTCAATTTGAGAGGGTGATTCATAT
5171 ACTAGAGGATATGATTTGGAGCTATGTGATTTATTTCTGAGGTAGTTGGGAGGA-TTTTTACCGT
521 ACTAGAGGATATGATTTGGAGCTATGTGATTTATTTCTGAGGTAGTTGGGAGGATTTTTTACCGT
5235 TAGTTGAGTTCGCCTACAATAAC
586 TAGTTGAGTTCGCCTACAATAAC
5258 AGTTTCCAATCTAGCATCTAGATGGCACCTTACGAGGCTCTATATGGTCATAAGTGTCATACTCT
1 AGTTTCCAATCTAGCATCTAGATGGCACCTTACGAGGCTCTATATGGTCATAAGTGTCATACTCT
5323 GTTATATTAGACTGAGTTGGGTGAGCGACGGGTTTTGGGT-CTGAGTTGGTTTCCGAGACTGAAG
66 GTTATATTAGACTGAGTTGGGTGAGCGACGGGTTTTGGGTCCTGAGTTGGTTTCCGAGACTGAAG
5387 ATAATGTTAGACTAATTTGGGATCGTCTGAAGGCGTCTTCTGATAGATAGAAGTCTTATGCAAAT
131 ATAATGTTAGACTAATTTGGGATCGTCTGAAGGCGTCTTCTGATAGATAGAAGTCTTATGCAAAT
5452 CTGAAAATCAGAGATATCAAGTACTCTATGGGGGACTTTGTATTTCTTAAGGTAACTCCGTGGAA
196 CTGAAAATCAGAGATATCAAGTACTCTATGGGGGACTTTGTATTTCTTAAGGTAACTCCGTGGAA
*
5517 AAAGGTTCTACGGTTCGCTTGACCAAGTCCGCTCATTTTATTCCTGTTCAGATGGACTACTCTCT
261 AAAGGTTCTACGGTTCGGTTGACCAAGTCCGCTCATTTTATTCCTGTTCAGATGGACTACTCTCT
5582 GC-AAAGTTAGTGAAGCTCTACATTTCTGAGATTGTAAGACTGCAT-GGGTTCCAATTTCAATAA
326 GCAAAAGTTAGTGAAGCTCTACATTTCTGAGATTGTAAGACTGCATGGGGTTCCAATTTCAATAA
5645 TCTCT-ATATGGATCCTCTCTTCACTTCACGGTTCTAGAAGAAACTTCACAAGGCTCTGGGTTCG
391 TCTCTGATATGGATCCTCTCTTCACTTCACGGTTCTAGAAGAAACTTCACAAGGCTCTGGGTTCG
5709 AGATTGAACTTCAGTACTGCGTTCCATCCTCAGACCGATGGTCAATTTGAGAGGGTGATTCATAT
456 AGATTGAACTTCAGTACTGCGTTCCATCCTCAGACCGATGGTCAATTTGAGAGGGTGATTCATAT
5774 ACTAGAGGATATGATTTGGAGCTATGTGATTTATTTCTGAGGTAGTTGGGAGGATTTTTTACCGT
521 ACTAGAGGATATGATTTGGAGCTATGTGATTTATTTCTGAGGTAGTTGGGAGGATTTTTTACCGT
5839 TAGTTGAGTTCGCCTACAATAAC
586 TAGTTGAGTTCGCCTACAATAAC
5862 AGTTTCCAATCTAGCATCTAGATGGCACCTTACGAGGCTCTATATGGTCATAAGTGTCATACTCT
1 AGTTTCCAATCTAGCATCTAGATGGCACCTTACGAGGCTCTATATGGTCATAAGTGTCATACTCT
5927 GTTATATTAGACTGAGTTGGGTGAGCGACGGG-TTTGGGT-CTGAGTTGGTTTCCGAGACTGAAG
66 GTTATATTAGACTGAGTTGGGTGAGCGACGGGTTTTGGGTCCTGAGTTGGTTTCCGAGACTGAAG
*
5990 ATAATGTTAGACTAATTTGGGATCATCTGAAGGCGTCTTCTGATAGATAGAAGTCTTATGCAAAT
131 ATAATGTTAGACTAATTTGGGATCGTCTGAAGGCGTCTTCTGATAGATAGAAGTCTTATGCAAAT
6055 CTGAAAATCAGAGATATCAAGTACTCTATGGGGGACTTTGTATTTCTT-AGGTAACTCCGTGGAA
196 CTGAAAATCAGAGATATCAAGTACTCTATGGGGGACTTTGTATTTCTTAAGGTAACTCCGTGGAA
6119 AAAGGTTCTACGGTTCGGTTGACCAAGTCCGCTCATTTTATTCCTGTTCAGATGGACTACTCTCT
261 AAAGGTTCTACGGTTCGGTTGACCAAGTCCGCTCATTTTATTCCTGTTCAGATGGACTACTCTCT
6184 GCAAAAGTTAGTGAAGCTCTACATTTCTGAGATTGTAAGACTGCATGGGGTTCCAATTTCAATAA
326 GCAAAAGTTAGTGAAGCTCTACATTTCTGAGATTGTAAGACTGCATGGGGTTCCAATTTCAATAA
6249 TCTCTGATATGGATCCTCTCTTCACTTCACGGTTCTAGAAGAAACTTCACAAGGCTCTGGGTTCG
391 TCTCTGATATGGATCCTCTCTTCACTTCACGGTTCTAGAAGAAACTTCACAAGGCTCTGGGTTCG
6314 AGATTGAACTTCAGTACTGCGTTCCATCCTCAGA-CGATGGTCAATTTGAGAGGGTGATTCATAT
456 AGATTGAACTTCAGTACTGCGTTCCATCCTCAGACCGATGGTCAATTTGAGAGGGTGATTCATAT
6378 ACTAGAGGATATGATTTGGAGCTATGTGATTTATTTCTGAGGTAGTTGGGAGGATTTTTTACCGT
521 ACTAGAGGATATGATTTGGAGCTATGTGATTTATTTCTGAGGTAGTTGGGAGGATTTTTTACCGT
6443 TAGTTGAGTTCGCCTACAATAAC
586 TAGTTGAGTTCGCCTACAATAAC
6466 AGTTTCCAATCTAGCATCTAGATGGCACCTTACGAGGCTCTATATGGTCATAAGTGTCATACT-T
1 AGTTTCCAATCTAGCATCTAGATGGCACCTTACGAGGCTCTATATGGTCATAAGTGTCATACTCT
6530 GTTATATTAGACTGAGTTGGGTGAGCGACGGGTTTTGGGGTCCTGAGTTGGTTTCCGAGACTGAA
66 GTTATATTAGACTGAGTTGGGTGAGCGACGGGTTTT-GGGTCCTGAGTTGGTTTCCGAGACTGAA
6595 GATAATGTTAGACTAATTTGGGATCGTCTGAAGGCGTCTTCTGATAGATAGAAGTCTTATGCAAA
130 GATAATGTTAGACTAATTTGGGATCGTCTGAAGGCGTCTTCTGATAGATAGAAGTCTTATGCAAA
6660 TCTGAAAATCAGAGATATCAAGTACTCTATGGGGGACTTTGTATTTCTTAAGGTAACTCCGTGGA
195 TCTGAAAATCAGAGATATCAAGTACTCTATGGGGGACTTTGTATTTCTTAAGGTAACTCCGTGGA
6725 AAAAGGTTCTACGGTTCGGTTGACCAAGTCCGCTCATTTTATTCCTGTTCAGATGGACTACTCTC
260 AAAAGGTTCTACGGTTCGGTTGACCAAGTCCGCTCATTTTATTCCTGTTCAGATGGACTACTCTC
6790 TGCAAAAGTTAGTGAAGCTCTACATTTCTGAGATTGTAAGACTGCATGGGGTTCCAATTTCAATA
325 TGCAAAAGTTAGTGAAGCTCTACATTTCTGAGATTGTAAGACTGCATGGGGTTCCAATTTCAATA
6855 ATCTCTGATATGGATCCTCTCTTCACTTCACGGTTCTAGAAGAAACTTCACAAGGCTCTAGGGTT
390 ATCTCTGATATGGATCCTCTCTTCACTTCACGGTTCTAGAAGAAACTTCACAAGGCTCT-GGGTT
6920 CGAGATTGAACTTCAGTACTGCGTTCCATCCTCAGACCGATGGTCAATTTGAGAGGGTGATTCAT
454 CGAGATTGAACTTCAGTACTGCGTTCCATCCTCAGACCGATGGTCAATTTGAGAGGGTGATTCAT
6985 ATACTAGAGGATATGATTTGGAGCTATGTGATTTATTTCTGAGGTAGTT-GGAGGA-TTTTTACC
519 ATACTAGAGGATATGATTTGGAGCTATGTGATTTATTTCTGAGGTAGTTGGGAGGATTTTTTACC
7048 GTTAGTTGAGTTCGCCTACAATAAC
584 GTTAGTTGAGTTCGCCTACAATAAC
7073 AGTTTCCAATCTAGCATCTAGATGGCACCTTACGAGGCTCTATATGGTCATAAGTGT-ATACTCT
1 AGTTTCCAATCTAGCATCTAGATGGCACCTTACGAGGCTCTATATGGTCATAAGTGTCATACTCT
7137 GTTATATTAGACTGAGTTGGGTGAGCGACGGGTTTTGGGTCCTGAGTTGGGTTTCCGAGACTGAA
66 GTTATATTAGACTGAGTTGGGTGAGCGACGGGTTTTGGGTCCTGAGTT-GGTTTCCGAGACTGAA
7202 GATAATGTTAGACTAATTTGGGATCGTCTGAAGGCGTCTTCTGATAGATAGAAGTCTTATGCAAA
130 GATAATGTTAGACTAATTTGGGATCGTCTGAAGGCGTCTTCTGATAGATAGAAGTCTTATGCAAA
7267 TCTGAAAATCAGAGATATCAAGTACTCTATGGGGGACTTTGTATTTCTTAAGGTAACTCCGTGGA
195 TCTGAAAATCAGAGATATCAAGTACTCTATGGGGGACTTTGTATTTCTTAAGGTAACTCCGTGGA
*
7332 AAAAGGTTCTACGGTTCCGTTGACCAAGTCCGCTCATTTTATTCCTGTTCAGATGGACTACTCTC
260 AAAAGGTTCTACGGTTCGGTTGACCAAGTCCGCTCATTTTATTCCTGTTCAGATGGACTACTCTC
7397 TGCAAAAGTTAGTGAAGCTCTACATTTCTGAGATTGTAAGACTGCAT-GGGTTCCAATTTCAATA
325 TGCAAAAGTTAGTGAAGCTCTACATTTCTGAGATTGTAAGACTGCATGGGGTTCCAATTTCAATA
7461 ATCTCTGATATGGATCCTCTCTTCACTTCACGGTTCTAGAAGAAACTTCACAAGGCTCTGGGTTC
390 ATCTCTGATATGGATCCTCTCTTCACTTCACGGTTCTAGAAGAAACTTCACAAGGCTCTGGGTTC
7526 GAGATTG-ACTTCAGTACTGCGTTCCATCCTCAGACCGATGGTCAATTTGAGAGGGTGATTCATA
455 GAGATTGAACTTCAGTACTGCGTTCCATCCTCAGACCGATGGTCAATTTGAGAGGGTGATTCATA
7590 TACTAGAGGATATGATTTGGAGCTATGTGATTTATTTCTGAGGTAGTTGGGAGGATTTTTTACCG
520 TACTAGAGGATATGATTTGGAGCTATGTGATTTATTTCTGAGGTAGTTGGGAGGATTTTTTACCG
7655 TTAGTTGAGTTCGCCTACAATAAC
585 TTAGTTGAGTTCGCCTACAATAAC
7679 AGTTTCCAATCTAGCATCTAGATGGCACC-TACGA-GCTCTATATGGT-ATAAGTGTCATACTCT
1 AGTTTCCAATCTAGCATCTAGATGGCACCTTACGAGGCTCTATATGGTCATAAGTGTCATACTCT
*
7741 GTTATATTAGACTGAGTTGGG-GTGCGAC-GG-TTTGGGT--T-AGTTGGTTTCCGAGACTGAAG
66 GTTATATTAGACTGAGTTGGGTGAGCGACGGGTTTTGGGTCCTGAGTTGGTTTCCGAGACTGAAG
7800 ATAATGTTAGACTAATTT-GGA-CGT-TGAAGGCGTCTT-T-AT-GATAGAAGTCTTAT-CAAAT
131 ATAATGTTAGACTAATTTGGGATCGTCTGAAGGCGTCTTCTGATAGATAGAAGTCTTATGCAAAT
7858 CTGAAAATCAGAGATATCAAGTACTCTAT--GGGACTTT-TATTTCTTAAGG-AACTCC-TGGAA
196 CTGAAAATCAGAGATATCAAGTACTCTATGGGGGACTTTGTATTTCTTAAGGTAACTCCGTGGAA
*
7918 AAAGGTTCTACGGTTC-GCTGACCAAGTCCGCTCA--TTATTCCTGTTCAGATGG-CTACTCTCT
261 AAAGGTTCTACGGTTCGGTTGACCAAGTCCGCTCATTTTATTCCTGTTCAGATGGACTACTCTCT
7979 GCAAAAG-TAGTGAAGCTCTACATTTCTGAGATTGTAAGACTGC-T-GGGTTCCAA-TT-AATAA
326 GCAAAAGTTAGTGAAGCTCTACATTTCTGAGATTGTAAGACTGCATGGGGTTCCAATTTCAATAA
8039 T-TCTGATATGGATCCTCTCTTCAC-TCA--GTTCTAGAAGAAACTTCA-AAGGCTCT-GGTTCG
391 TCTCTGATATGGATCCTCTCTTCACTTCACGGTTCTAGAAGAAACTTCACAAGGCTCTGGGTTCG
8098 A-ATTG-AC-TC--TACTGCGTTCCATCCTCAGA-CGATGGTC-ATTT--GA--GTGATTCATAT
456 AGATTGAACTTCAGTACTGCGTTCCATCCTCAGACCGATGGTCAATTTGAGAGGGTGATTCATAT
*
8152 -CTAGAGGATATGA-TTGGAGCTATGTGATTTATTACTGAGGTTAGTT-GGAGGATTTTTTTACC
521 ACTAGAGGATATGATTTGGAGCTATGTGATTTATTTCTGAGG-TAGTTGGGAGGA-TTTTTTACC
8214 GTTAGTTGAGTTCGCCTACAATAAC
584 GTTAGTTGAGTTCGCCTACAATAAC
8239 AGTTTCCAATCTAGCATCTAGATGGCACCTTACGAGGCTCTATATGGTCATAAGTGTCATACTCT
1 AGTTTCCAATCTAGCATCTAGATGGCACCTTACGAGGCTCTATATGGTCATAAGTGTCATACTCT
8304 GTTATATTAGACTGAGTTGGGTGAGCGACGGGTTTTGGGTCCTGAGTTGGTTTCCGAGACTGAAG
66 GTTATATTAGACTGAGTTGGGTGAGCGACGGGTTTTGGGTCCTGAGTTGGTTTCCGAGACTGAAG
8369 ATAATGTTAGACTAATTT-GGATCGTCTGAAGGCGTCTTCTGATAGATAGAAGTCTTATGC-AAT
131 ATAATGTTAGACTAATTTGGGATCGTCTGAAGGCGTCTTCTGATAGATAGAAGTCTTATGCAAAT
8432 CTG-AAATCAGAGATATCAAGTACTCTATGGGGGACTTTGTATTTCTTAA-GTAACTCCGTGGAA
196 CTGAAAATCAGAGATATCAAGTACTCTATGGGGGACTTTGTATTTCTTAAGGTAACTCCGTGGAA
*
8495 AAAGGTTCTACGGTTCGCTTGACCAAGTCCGCTCATTTTATTCCT-TTCAGATGGACTACTCTCT
261 AAAGGTTCTACGGTTCGGTTGACCAAGTCCGCTCATTTTATTCCTGTTCAGATGGACTACTCTCT
8559 GCAAAAGTTAGTGAAGCTCTACATTTCTTGAGATTGTAAGACTGCATGGGGTTCCAATTTCAATA
326 GCAAAAGTTAGTGAAGCTCTACATTTC-TGAGATTGTAAGACTGCATGGGGTTCCAATTTCAATA
8624 ATCTCTGATATGGATCCTCTCTTCACTTCACGGTTCTAGAAGAAAC-TCACAAGGCTCTGGGTTC
390 ATCTCTGATATGGATCCTCTCTTCACTTCACGGTTCTAGAAGAAACTTCACAAGGCTCTGGGTTC
*
8688 GAGATTGAACTTCAGTACTGCGTTCCATCCTCAGACCGATGGTCAATTTGAG-GGGTTGATTCCT
455 GAGATTGAACTTCAGTACTGCGTTCCATCCTCAGACCGATGGTCAATTTGAGAGGG-TGATT-CA
8752 TATACTAGAGGATATGA-TTGGAGCTATGTGATTTATTTCTGAGGTAGTTGGGA-GATTTTTTAC
518 TATACTAGAGGATATGATTTGGAGCTATGTGATTTATTTCTGAGGTAGTTGGGAGGATTTTTTAC
*
8815 CGTTTAGTTGAGTTCACCTACAATAAC
583 CG-TTAGTTGAGTTCGCCTACAATAAC
8842 -GTTTCCCAATCTAGCATCTAGATGGCACCTTACGAGGCTCTATATGGTCATAAGTGTTTCATAC
1 AGTTT-CCAATCTAGCATCTAGATGGCACCTTACGAGGCTCTATATGGTCATAAGTG--TCATAC
8906 TCTGTTATATTAGACTGAGTTGGGTGAGCGACGGGTTTTGGGTCCTGAGTTGGTTTCCGAGACTG
63 TCTGTTATATTAGACTGAGTTGGGTGAGCGACGGGTTTTGGGTCCTGAGTTGGTTTCCGAGACTG
8971 AAGATAATGGTTTAGACTAATTTGGGATCGTCTGAAGGCGTCTTCTGATAGATAGAAGTCTTATG
128 AAGATAAT-G-TTAGACTAATTTGGGATCGTCTGAAGGCGTCTTCTGATAGATAGAAGTCTTATG
9036 CAAATCTG-AAATCAGAGATATCAAGTACTCTATGGGGGACTTTGTATTTCTTAAGGTAACTCCG
191 CAAATCTGAAAATCAGAGATATCAAGTACTCTATGGGGGACTTTGTATTTCTTAAGGTAACTCCG
*
9100 TGG-AAAA-GTTCTACGGTTCGCTTGACC-AGTCCG-TCATTTTATTCCTGTTCAGATGGGA-TA
256 TGGAAAAAGGTTCTACGGTTCGGTTGACCAAGTCCGCTCATTTTATTCCTGTTCAGAT-GGACTA
9160 CTCTCTGCAAAAGTT-GTGAAGCTCTACATTTCTGAGATTGT-AGACTGCATGGGGTTCCAATTT
320 CTCTCTGCAAAAGTTAGTGAAGCTCTACATTTCTGAGATTGTAAGACTGCATGGGGTTCCAATTT
*
9223 CAATAATCTCTGATATGGATCCTCTCTTCACTTCATGGTTCTAGAAGAAACTTACACAA-GCTCT
385 CAATAATCTCTGATATGGATCCTCTCTTCACTTCACGGTTCTAGAAGAAACTT-CACAAGGCTCT
*
9287 GGGTTCGAGATTGAACTTCAGTACTGCGTTCCATCCTCAGACCGAATGGTCAATTTTAGAGGGTG
449 GGGTTCGAGATTGAACTTCAGTACTGCGTTCCATCCTCAGACCG-ATGGTCAATTTGAGAGGGTG
*
9352 ATTCATATACTAGAGGATATGATTTGGAGCTATGTGATTTA-TTCATGCAGGTAGTTTGAGAGGA
513 ATTCATATACTAGAGGATATGATTTGGAGCTATGTGATTTATTTC-TG-AGGTAG-TTGGGAGGA
9416 TTTTTTACCGTTAGTGTGCAGTTCGCCTACAATAAC
575 TTTTTTACCGTTAGT-TG-AGTTCGCCTACAATAAC
9452 AGTTTCCAATCTAGCAATCTAGATGGCACCTTACGAGGCTCTATATGGTCATAAGTGTCATACT-
1 AGTTTCCAATCTAGC-ATCTAGATGGCACCTTACGAGGCTCTATATGGTCATAAGTGTCATACTC
* *
9516 TGTTATATTAGACTGAGTTGGCTTGAGCGACGGGTTTTGGGTGCTGAGTTGGTTTCCGAGACTGA
65 TGTTATATTAGACTGAGTTGG-GTGAGCGACGGGTTTTGGGTCCTGAGTTGGTTTCCGAGACTGA
9581 AGATAATGTTAGACTAATTTGGGATCGTCTGAAGGCGTCTTCTGATAGATAAGAAGTCTTATGCA
129 AGATAATGTTAGACTAATTTGGGATCGTCTGAAGGCGTCTTCTGATAGAT-AGAAGTCTTATGCA
9646 AATCTGAAAATCAGAGATATCAAGTACTCTAGTGGGGGACTTTGTATTTCTTAAGGTAA-TCCTG
193 AATCTGAAAATCAGAGATATCAAGTACTCTA-TGGGGGACTTTGTATTTCTTAAGGTAACTCC-G
* *
9710 TGGAAAAAGGTTCTTACGGTTCCGTTGACCAAGTCCGCTCATATTTACTTCCTGTTCAGGATGAA
256 TGGAAAAAGGTTC-TACGGTTCGGTTGACCAAGTCCGCTCAT-TTTA-TTCCTGTTCA-GATGGA
9775 GCTACTACTCTGGCAAAAG-TA-TGAGAGCTCTACATTTCTGAGATTGGTAAGACTTG-ATGGGG
317 -CTACT-CTCT-GCAAAAGTTAGTGA-AGCTCTACATTTCTGAGATT-GTAAGAC-TGCATGGGG
9837 TTCCAATTCTCAAATAAT
376 TTCCAATT-TC-AATAAT
9855 GCCTGATTTT
Statistics
Matches: 6236, Mismatches: 27, Indels: 255
0.96 0.00 0.04
Matches are distributed among these distances:
559 32 0.01
560 81 0.01
561 16 0.00
562 12 0.00
563 39 0.01
564 6 0.00
565 6 0.00
566 15 0.00
567 20 0.00
568 1 0.00
569 44 0.01
570 9 0.00
571 19 0.00
572 9 0.00
573 45 0.01
574 20 0.00
575 13 0.00
576 39 0.01
577 27 0.00
578 18 0.00
579 19 0.00
580 60 0.01
581 35 0.01
582 35 0.01
583 1 0.00
584 26 0.00
585 23 0.00
586 12 0.00
587 35 0.01
588 11 0.00
589 3 0.00
590 56 0.01
591 21 0.00
592 6 0.00
593 3 0.00
594 14 0.00
595 3 0.00
596 23 0.00
597 43 0.01
598 110 0.02
599 173 0.03
600 188 0.03
601 499 0.08
602 455 0.07
603 876 0.14
604 975 0.16
605 387 0.06
606 365 0.06
607 681 0.11
608 164 0.03
609 229 0.04
610 69 0.01
611 49 0.01
612 4 0.00
613 14 0.00
614 6 0.00
615 4 0.00
616 4 0.00
617 12 0.00
618 3 0.00
619 4 0.00
620 8 0.00
621 27 0.00
622 2 0.00
623 18 0.00
624 4 0.00
625 6 0.00
ACGTcount: A:0.26, C:0.18, G:0.23, T:0.33
Consensus pattern (608 bp):
AGTTTCCAATCTAGCATCTAGATGGCACCTTACGAGGCTCTATATGGTCATAAGTGTCATACTCT
GTTATATTAGACTGAGTTGGGTGAGCGACGGGTTTTGGGTCCTGAGTTGGTTTCCGAGACTGAAG
ATAATGTTAGACTAATTTGGGATCGTCTGAAGGCGTCTTCTGATAGATAGAAGTCTTATGCAAAT
CTGAAAATCAGAGATATCAAGTACTCTATGGGGGACTTTGTATTTCTTAAGGTAACTCCGTGGAA
AAAGGTTCTACGGTTCGGTTGACCAAGTCCGCTCATTTTATTCCTGTTCAGATGGACTACTCTCT
GCAAAAGTTAGTGAAGCTCTACATTTCTGAGATTGTAAGACTGCATGGGGTTCCAATTTCAATAA
TCTCTGATATGGATCCTCTCTTCACTTCACGGTTCTAGAAGAAACTTCACAAGGCTCTGGGTTCG
AGATTGAACTTCAGTACTGCGTTCCATCCTCAGACCGATGGTCAATTTGAGAGGGTGATTCATAT
ACTAGAGGATATGATTTGGAGCTATGTGATTTATTTCTGAGGTAGTTGGGAGGATTTTTTACCGT
TAGTTGAGTTCGCCTACAATAAC
Done.