Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold_5805

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 9710
ACGTcount: A:0.34, C:0.14, G:0.17, T:0.35


Found at i:7419 original size:16 final size:17

Alignment explanation


    Indices: 7398--7430  Score: 59
    Period size: 17  Copynumber: 2.0  Consensus size: 17

       7388 AATATTAATA

                             
       7398 AAAAATA-TTTAATTAT
          1 AAAAATATTTTAATTAT

                             
       7414 AAAAATATTTTAATTAT
          1 AAAAATATTTTAATTAT

       7431 TATTAAATTA


Statistics
Matches: 16,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  16    7  0.44
  17    9  0.56

ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45


Consensus pattern (17 bp):   
AAAAATATTTTAATTAT
Done.