Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100714657
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 3970000 characters in sequence are not A, C, G, or T
File 100 of 318
Found at i:32707202 original size:21 final size:22
Alignment explanation
Indices: 32707176--32707221 Score: 60
Period size: 20 Copynumber: 2.2 Consensus size: 22
32707166 AGGTTTATTG
32707176 TTTTTTTATT-TCTTTTCTTCC
1 TTTTTTTATTATCTTTTCTTCC
* *
32707197 -TTTTTTATTATTTTTTCTTTC
1 TTTTTTTATTATCTTTTCTTCC
32707218 TTTT
1 TTTT
32707222 CTAAACTAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
20 9 0.43
21 9 0.43
22 3 0.14
ACGTcount: A:0.07, C:0.13, G:0.00, T:0.80
Consensus pattern (22 bp):
TTTTTTTATTATCTTTTCTTCC
Found at i:32708006 original size:3 final size:3
Alignment explanation
Indices: 32708000--32708063 Score: 94
Period size: 3 Copynumber: 21.0 Consensus size: 3
32707990 TTGTTATCAC
*
32708000 TAT TAT T-T CTAT TAT TTT TAT TAT TACT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT -TAT TAT TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT
32708046 TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT
32708064 CAATATTTAC
Statistics
Matches: 56, Mismatches: 2, Indels: 6
0.88 0.03 0.09
Matches are distributed among these distances:
2 1 0.02
3 51 0.91
4 4 0.07
ACGTcount: A:0.30, C:0.03, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:32708194 original size:16 final size:16
Alignment explanation
Indices: 32708170--32708200 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
32708160 TATTTCACTA
32708170 TTATCATTTTTTATTG
1 TTATCATTTTTTATTG
*
32708186 TTATTATTTTTTATT
1 TTATCATTTTTTATT
32708201 ACTTACTATC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.19, C:0.03, G:0.03, T:0.74
Consensus pattern (16 bp):
TTATCATTTTTTATTG
Found at i:32708362 original size:3 final size:3
Alignment explanation
Indices: 32708354--32708380 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
32708344 TCTTACTGTC
32708354 ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT
32708381 TCTATTTATT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:32710660 original size:19 final size:18
Alignment explanation
Indices: 32710626--32710666 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 18
32710616 CTTTCTTTTA
32710626 CATTCATTCATGCATTTG
1 CATTCATTCATGCATTTG
32710644 CATTGCATTGCAT-CATTTG
1 CATT-CATT-CATGCATTTG
32710663 CATT
1 CATT
32710667 AGACTTCCTC
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 4 0.19
19 14 0.67
20 3 0.14
ACGTcount: A:0.22, C:0.22, G:0.12, T:0.44
Consensus pattern (18 bp):
CATTCATTCATGCATTTG
Found at i:32715073 original size:66 final size:66
Alignment explanation
Indices: 32714962--32715090 Score: 206
Period size: 66 Copynumber: 2.0 Consensus size: 66
32714952 ATTCATATAT
32714962 CATTCATAACACATCTAATTAGGAGCATTTGATTCATTTCTATCATAACATCCTAATTATTTGAC
1 CATTCATAACACATCTAATTAGGAGCATTTGATTCATTTCTATCATAACATCCTAATTATTTGAC
32715027 A
66 A
* * * *
32715028 CATTCATAACGCATCTAATTAGGAGCATTTGGTTCATTT-TGATCATAGCATCCTAATTCTTTG
1 CATTCATAACACATCTAATTAGGAGCATTTGATTCATTTCT-ATCATAACATCCTAATTATTTG
32715091 GCATAAGCAT
Statistics
Matches: 58, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
65 1 0.02
66 57 0.98
ACGTcount: A:0.31, C:0.19, G:0.11, T:0.39
Consensus pattern (66 bp):
CATTCATAACACATCTAATTAGGAGCATTTGATTCATTTCTATCATAACATCCTAATTATTTGAC
A
Found at i:32715219 original size:43 final size:44
Alignment explanation
Indices: 32715144--32715228 Score: 120
Period size: 43 Copynumber: 2.0 Consensus size: 44
32715134 CTAGAATCAG
* **
32715144 TGAATTCACCAGACCTTAACCCCATATGCAGTAGGGTAACAGGT
1 TGAATTCACAAGACCTTAACCCCATAAACAGTAGGGTAACAGGT
32715188 TGAATTCACAAG-CCTTAACCTCC-TAAACAGTAGGGTAACAG
1 TGAATTCACAAGACCTTAACC-CCATAAACAGTAGGGTAACAG
32715229 ACTGAAGATA
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
43 24 0.65
44 13 0.35
ACGTcount: A:0.34, C:0.25, G:0.19, T:0.22
Consensus pattern (44 bp):
TGAATTCACAAGACCTTAACCCCATAAACAGTAGGGTAACAGGT
Found at i:32715354 original size:88 final size:87
Alignment explanation
Indices: 32715202--32715405 Score: 257
Period size: 88 Copynumber: 2.3 Consensus size: 87
32715192 TTCACAAGCC
* *
32715202 TTAACCTCCTAAACAGTAGGGTAAC-AGACTGAAGATATAGATCTTATCACCCTAAGCAGTAGGG
1 TTAACCCCCTAAGCAGTAGGGTAACAAG-CTGAAGATATAGATCTTATCACCCTAAGCAGTAGGG
*
32715266 AAACAGATCAAAGGCAACGAGCT
65 AAACAGATCAAAGACAACGAGCT
* * *
32715289 TTAACCCCCTAAGTAGTAGGGTAACAAGCTGAAGTTTATAGATCTTATCACCTTAAGCAGTAGGG
1 TTAACCCCCTAAGCAGTAGGGTAACAAGCTGAAG-ATATAGATCTTATCACCCTAAGCAGTAGGG
* * ** *
32715354 AAATAGATCGAAGATGATGAGCT
65 AAACAGATCAAAGACAACGAGCT
** *
32715377 TTAACCCTTTAAGCAGTAGAGTAACAAGC
1 TTAACCCCCTAAGCAGTAGGGTAACAAGC
32715406 CAAATTTACA
Statistics
Matches: 100, Mismatches: 15, Indels: 3
0.85 0.13 0.03
Matches are distributed among these distances:
87 28 0.28
88 72 0.72
ACGTcount: A:0.37, C:0.19, G:0.21, T:0.23
Consensus pattern (87 bp):
TTAACCCCCTAAGCAGTAGGGTAACAAGCTGAAGATATAGATCTTATCACCCTAAGCAGTAGGGA
AACAGATCAAAGACAACGAGCT
Found at i:32715661 original size:42 final size:43
Alignment explanation
Indices: 32715604--32715709 Score: 117
Period size: 42 Copynumber: 2.5 Consensus size: 43
32715594 GGCTTCAACC
* * *
32715604 CCCTAAGCAATAGGGTAGCAAG-TCAAATTTTCAAACCTTAA-A
1 CCCTAAGCAGTAGGGTAACAGGCT-AAATTTTCAAACCTTAACA
* * * *
32715646 CCCTAAGCAGTAGGGTAACAGGCTGAATTTTCAGATCTTAACC
1 CCCTAAGCAGTAGGGTAACAGGCTAAATTTTCAAACCTTAACA
*
32715689 CCCTAAGCAGTAGGGAAACAG
1 CCCTAAGCAGTAGGGTAACAG
32715710 ATCGAAGACA
Statistics
Matches: 54, Mismatches: 8, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
42 33 0.61
43 21 0.39
ACGTcount: A:0.36, C:0.23, G:0.20, T:0.22
Consensus pattern (43 bp):
CCCTAAGCAGTAGGGTAACAGGCTAAATTTTCAAACCTTAACA
Found at i:32715709 original size:43 final size:42
Alignment explanation
Indices: 32715629--32715709 Score: 117
Period size: 43 Copynumber: 1.9 Consensus size: 42
32715619 TAGCAAGTCA
*
32715629 AATTTTCAAACCTTAAACCCTAAGCAGTAGGGTAACAGGCTG
1 AATTTTCAAACCTTAAACCCTAAGCAGTAGGGAAACAGGCTG
* * *
32715671 AATTTTCAGATCTTAACCCCCTAAGCAGTAGGGAAACAG
1 AATTTTCAAACCTTAA-ACCCTAAGCAGTAGGGAAACAG
32715710 ATCGAAGACA
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
42 14 0.41
43 20 0.59
ACGTcount: A:0.36, C:0.22, G:0.19, T:0.23
Consensus pattern (42 bp):
AATTTTCAAACCTTAAACCCTAAGCAGTAGGGAAACAGGCTG
Found at i:32715729 original size:86 final size:84
Alignment explanation
Indices: 32715639--32715883 Score: 337
Period size: 86 Copynumber: 2.8 Consensus size: 84
32715629 AATTTTCAAA
*
32715639 CCTTAAACCCTAAGCAGTAGGGTAACAGGCTGAATTTTCAGATCTTAACCCCCTAAGCAGTAGGG
1 CCTTAAACCCTAAGCAGTAGGGTAACAGGCT-AAATTTCAGATCTTAACCCCCTAAGCAGTAGGG
32715704 AAACAGATCGAAGACAAAGGG
65 -AACAGATCGAAGACAAAGGG
* * * * * * *
32715725 CCTTAAACCCTCAAGTAGTAGGGTAACAGACCAAATTGCAGATCTTATCTCCCTAAGTAGTAGTG
1 CCTTAAACCCT-AAGCAGTAGGGTAACAGGCTAAATTTCAGATCTTAACCCCCTAAGCAGTAG-G
* *
32715790 GAGCAGATCGAAGACGAAGGG
64 GAACAGATCGAAGACAAAGGG
32715811 CCTTAAACCCCTAAGCAGTAGGGTAACAGGCTAAATTTCTAGATCTTAACCCCCTAAGCAGTAGG
1 CCTTAAA-CCCTAAGCAGTAGGGTAACAGGCTAAATTTC-AGATCTTAACCCCCTAAGCAGTAGG
32715876 GTAACAGA
64 G-AACAGA
32715884 CCAAATTACA
Statistics
Matches: 136, Mismatches: 18, Indels: 9
0.83 0.11 0.06
Matches are distributed among these distances:
86 87 0.64
87 49 0.36
ACGTcount: A:0.35, C:0.22, G:0.22, T:0.20
Consensus pattern (84 bp):
CCTTAAACCCTAAGCAGTAGGGTAACAGGCTAAATTTCAGATCTTAACCCCCTAAGCAGTAGGGA
ACAGATCGAAGACAAAGGG
Found at i:32715867 original size:43 final size:42
Alignment explanation
Indices: 32715812--32716098 Score: 188
Period size: 43 Copynumber: 6.7 Consensus size: 42
32715802 GACGAAGGGC
* *
32715812 CTTAAACCCCTAAGCAGTAGGGTAACAGGCTAAATTTCTAGAT
1 CTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAATTAC-AGAT
* *
32715855 CTTAACCCCCTAAGCAGTAGGGTAACAGACCAAATTACAGAT
1 CTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAATTACAGAT
* * ** * * *
32715897 CTTATCTCCCTAAGCAGTAGTGG-AGTA-GATCAAA-GACGAAGGGT
1 CTTAACCCCCTAAGCAGTAG-GGTAACAGGCT-AAATTAC--A-GAT
* * *
32715941 CTTGAACCCCCTAAGCAGTAGGGTAACAGACCAAATTGCAGAT
1 CTT-AACCCCCTAAGCAGTAGGGTAACAGGCTAAATTACAGAT
* * * * * ** *
32715984 CTTATCTCCCTAAGCAGTAGTGG-AGCAGATCGAAGACGA-AGGGT
1 CTTAACCCCCTAAGCAGTAG-GGTAACAG-GCTAA-ATTACA-GAT
* * * *
32716028 GTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAATTTCCAGAT
1 CTTAACCCCCTAAGCAGTAGGGTAACAGGCT-AAATTACAGAT
*
32716071 CTTAACCCCCTAAGCAGTAGGGAAACAG
1 CTTAACCCCCTAAGCAGTAGGGTAACAG
32716099 ATCGAAGACG
Statistics
Matches: 181, Mismatches: 47, Indels: 32
0.70 0.18 0.12
Matches are distributed among these distances:
41 2 0.01
42 46 0.25
43 78 0.43
44 34 0.19
45 20 0.11
46 1 0.01
ACGTcount: A:0.34, C:0.23, G:0.23, T:0.21
Consensus pattern (42 bp):
CTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAATTACAGAT
Found at i:32715874 original size:129 final size:129
Alignment explanation
Indices: 32715732--32716003 Score: 411
Period size: 129 Copynumber: 2.1 Consensus size: 129
32715722 GGGCCTTAAA
* * *
32715732 CCCTCAAGTAGTAGGGTAACAGACCAAATTGCAGATCTTATCTCCCTAAGTAGTAGTGGAGCAGA
1 CCCT-AAGCAGTAGGGTAACAGACCAAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGA
* * * *
32715797 TCGAAGACGAAGGGCCTT-AAACCCCTAAGCAGTAGGGTAACAGGCTAAATTTCTAGATCTTAAC
65 TCAAAGACGAAGGGCCTTGAAACCCCTAAGCAGTAGGGTAACAGACCAAATTGC-AGATCTTAAC
32715861 C
129 C
*
32715862 CCCTAAGCAGTAGGGTAACAGACCAAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGTAGAT
1 CCCTAAGCAGTAGGGTAACAGACCAAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGAT
* * * *
32715927 CAAAGACGAAGGGTCTTGAACCCCCTAAGCAGTAGGGTAACAGACCAAATTGCAGATCTTATCT
66 CAAAGACGAAGGGCCTTGAAACCCCTAAGCAGTAGGGTAACAGACCAAATTGCAGATCTTAACC
32715991 CCCTAAGCAGTAG
1 CCCTAAGCAGTAG
32716004 TGGAGCAGAT
Statistics
Matches: 129, Mismatches: 12, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
129 94 0.73
130 35 0.27
ACGTcount: A:0.33, C:0.23, G:0.22, T:0.22
Consensus pattern (129 bp):
CCCTAAGCAGTAGGGTAACAGACCAAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGAT
CAAAGACGAAGGGCCTTGAAACCCCTAAGCAGTAGGGTAACAGACCAAATTGCAGATCTTAACC
Found at i:32715990 original size:216 final size:216
Alignment explanation
Indices: 32715560--32716099 Score: 698
Period size: 216 Copynumber: 2.5 Consensus size: 216
32715550 AGATCTAACC
* * * * * *
32715560 CCCTAAGCAGTA-TGGAAACAGATCGAA-AGTGATGGG-CTTCAACCCCCTAAGCAATAGGGTAG
1 CCCTAAGCAGTAGTGG-AGCAGATCGAAGA-CGAAGGGCCTT-AAACCCCTAAGCAGTAGGGTAA
* * * * * * * * *
32715622 CAAG-TCAAATTTTCAAACCTTAA-ACCCTAAGCAGTAGGGTAACAGGCTGAATTTTCAGATCTT
63 CAGGCT-AAATTTCCAGATCTTAACCCCCTAAGCAGTAGGGTAACAGACTCAAATTACAGATCTT
* * *
32715685 AACCCCCTAAGCAGTAGGGAAACAGATCGAAGACAAAGGGCCTTAAACCCTCAAGTAGTAGGGTA
127 AACCCCCTAAGCAGTAGGGAAACAGATCAAAGACAAAGGGCCTTAAACCCCCAAGCAGTAGGGTA
32715750 ACAGACCAAATTGCAGATCTTATCT
192 ACAGACCAAATTGCAGATCTTATCT
*
32715775 CCCTAAGTAGTAGTGGAGCAGATCGAAGACGAAGGGCCTTAAACCCCTAAGCAGTAGGGTAACAG
1 CCCTAAGCAGTAGTGGAGCAGATCGAAGACGAAGGGCCTTAAACCCCTAAGCAGTAGGGTAACAG
* * *
32715840 GCTAAATTTCTAGATCTTAACCCCCTAAGCAGTAGGGTAACAGAC-CAAATTACAGATCTTATCT
66 GCTAAATTTCCAGATCTTAACCCCCTAAGCAGTAGGGTAACAGACTCAAATTACAGATCTTAACC
** * * *
32715904 CCCTAAGCAGTAGTGG-AGTAGATCAAAGACGAAGGGTCTTGAACCCCCTAAGCAGTAGGGTAAC
131 CCCTAAGCAGTAG-GGAAACAGATCAAAGACAAAGGGCCTTAAACCCCC-AAGCAGTAGGGTAAC
32715968 AGACCAAATTGCAGATCTTATCT
194 AGACCAAATTGCAGATCTTATCT
**
32715991 CCCTAAGCAGTAGTGGAGCAGATCGAAGACGAAGGGTGTTAAACCCCTAAGCAGTAGGGTAACAG
1 CCCTAAGCAGTAGTGGAGCAGATCGAAGACGAAGGGCCTTAAACCCCTAAGCAGTAGGGTAACAG
* *
32716056 GCTGAATTTCCAGATCTTAACCCCCTAAGCAGTAGGGAAACAGA
66 GCTAAATTTCCAGATCTTAACCCCCTAAGCAGTAGGGTAACAGA
32716100 TCGAAGACGA
Statistics
Matches: 285, Mismatches: 33, Indels: 13
0.86 0.10 0.04
Matches are distributed among these distances:
215 113 0.40
216 172 0.60
ACGTcount: A:0.35, C:0.22, G:0.23, T:0.20
Consensus pattern (216 bp):
CCCTAAGCAGTAGTGGAGCAGATCGAAGACGAAGGGCCTTAAACCCCTAAGCAGTAGGGTAACAG
GCTAAATTTCCAGATCTTAACCCCCTAAGCAGTAGGGTAACAGACTCAAATTACAGATCTTAACC
CCCTAAGCAGTAGGGAAACAGATCAAAGACAAAGGGCCTTAAACCCCCAAGCAGTAGGGTAACAG
ACCAAATTGCAGATCTTATCT
Found at i:32716134 original size:44 final size:42
Alignment explanation
Indices: 32715681--32716136 Score: 181
Period size: 44 Copynumber: 10.5 Consensus size: 42
32715671 AATTTTCAGA
* *
32715681 TCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGACAAAGGG
1 TCTTAAACCCCTAAGCAGTAGGG-AACAGATCGAAGAC-GAGGG
* * * * *
32715725 CCTTAAA-CCCTCAAGTAGTAGGGTAACAGA-CCAA-ATTGCA-GA
1 TCTTAAACCCCT-AAGCAGTAGGG-AACAGATCGAAGA-CG-AGGG
* * *
32715767 TCTT-ATCTCCCTAAGTAGTAGTGGAGCAGATCGAAGACGAAGGG
1 TCTTAAAC-CCCTAAGCAGTAG-GGAACAGATCGAAGACG-AGGG
* * * * *
32715811 CCTTAAACCCCTAAGCAGTAGGGTAACAG-GCTAA-ATTTCTA-GA
1 TCTTAAACCCCTAAGCAGTAGGG-AACAGATCGAAGA---CGAGGG
* * * * *
32715854 TCTTAACCCCCTAAGCAGTAGGGTAACAGACCAAATTAC-A-GA
1 TCTTAAACCCCTAAGCAGTAGGG-AACAGATCGAA-GACGAGGG
* ** *
32715896 TCTT-ATCTCCCTAAGCAGTAGTGGAGTAGATCAAAGACGAAGGG
1 TCTTAAAC-CCCTAAGCAGTAG-GGAACAGATCGAAGACG-AGGG
* * * *
32715940 TCTTGAACCCCCTAAGCAGTAGGGTAACAGA-CCAA-ATTGCA-GA
1 TCTT-AAACCCCTAAGCAGTAGGG-AACAGATCGAAGA-CG-AGGG
* *
32715983 TCTT-ATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGAAGGG
1 TCTTAAAC-CCCTAAGCAGTAG-GGAACAGATCGAAGACG-AGGG
* * ** * *
32716027 TGTTAAACCCCTAAGCAGTAGGGTAACAG-GCTGAATTTCCA-GA
1 TCTTAAACCCCTAAGCAGTAGGG-AACAGATC-GAA-GACGAGGG
*
32716070 TCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGACGATGGG
1 TCTTAAACCCCTAAGCAGTAGGG-AACAGATCGAAGACGA-GGG
*
32716114 CCTTAAACCCCTAAGCAGTAGGG
1 TCTTAAACCCCTAAGCAGTAGGG
32716137 TACCAGGCTG
Statistics
Matches: 310, Mismatches: 64, Indels: 76
0.69 0.14 0.17
Matches are distributed among these distances:
41 7 0.02
42 68 0.22
43 102 0.33
44 107 0.35
45 23 0.07
46 3 0.01
ACGTcount: A:0.34, C:0.23, G:0.24, T:0.20
Consensus pattern (42 bp):
TCTTAAACCCCTAAGCAGTAGGGAACAGATCGAAGACGAGGG
Found at i:32716148 original size:87 final size:86
Alignment explanation
Indices: 32715854--32716138 Score: 401
Period size: 87 Copynumber: 3.3 Consensus size: 86
32715844 AATTTCTAGA
*
32715854 TCTTAACCCCCTAAGCAGTAGGGTAACAGACCAAATTACAGATCTTATCTCCCTAAGCAGTAGTG
1 TCTTAAACCCCTAAGCAGTAGGGTAACAGACCAAATTACAGATCTTATCTCCCTAAGCAGTAGTG
* *
32715919 GAGTAGATCAAAGACGAAGGG
66 GAGCAGATCGAAGACGAAGGG
* *
32715940 TCTTGAACCCCCTAAGCAGTAGGGTAACAGACCAAATTGCAGATCTTATCTCCCTAAGCAGTAGT
1 TCTT-AAACCCCTAAGCAGTAGGGTAACAGACCAAATTACAGATCTTATCTCCCTAAGCAGTAGT
32716005 GGAGCAGATCGAAGACGAAGGG
65 GGAGCAGATCGAAGACGAAGGG
* * * * * * *
32716027 TGTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAATTTCCAGATCTTAACCCCCTAAGCAGTAG-
1 TCTTAAACCCCTAAGCAGTAGGGTAACAGAC-CAAATTACAGATCTTATCTCCCTAAGCAGTAGT
* *
32716091 GGAAACAGATCGAAGACGATGGG
65 GG-AGCAGATCGAAGACGAAGGG
*
32716114 CCTTAAACCCCTAAGCAGTAGGGTA
1 TCTTAAACCCCTAAGCAGTAGGGTA
32716139 CCAGGCTGAA
Statistics
Matches: 181, Mismatches: 15, Indels: 5
0.90 0.07 0.02
Matches are distributed among these distances:
86 31 0.17
87 150 0.83
ACGTcount: A:0.33, C:0.23, G:0.24, T:0.20
Consensus pattern (86 bp):
TCTTAAACCCCTAAGCAGTAGGGTAACAGACCAAATTACAGATCTTATCTCCCTAAGCAGTAGTG
GAGCAGATCGAAGACGAAGGG
Found at i:32717171 original size:19 final size:20
Alignment explanation
Indices: 32717147--32717189 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
32717137 GTTTATTGTT
32717147 TTTTTATT-TCTTTTCTTCC
1 TTTTTATTATCTTTTCTTCC
* *
32717166 TTTTTATTATTTTTTCTTTC
1 TTTTTATTATCTTTTCTTCC
32717186 TTTT
1 TTTT
32717190 CAAAACTAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 8 0.38
20 13 0.62
ACGTcount: A:0.07, C:0.14, G:0.00, T:0.79
Consensus pattern (20 bp):
TTTTTATTATCTTTTCTTCC
Found at i:32717631 original size:3 final size:3
Alignment explanation
Indices: 32717625--32717688 Score: 94
Period size: 3 Copynumber: 21.0 Consensus size: 3
32717615 TTGTTATCAC
*
32717625 TAT TAT T-T CTAT TAT TTT TAT TAT TACT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT -TAT TAT TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT
32717671 TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT
32717689 CATCATCATA
Statistics
Matches: 56, Mismatches: 2, Indels: 6
0.88 0.03 0.09
Matches are distributed among these distances:
2 1 0.02
3 51 0.91
4 4 0.07
ACGTcount: A:0.30, C:0.03, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:32717809 original size:16 final size:16
Alignment explanation
Indices: 32717785--32717815 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
32717775 TATTTCACTA
32717785 TTATCATTTTTTATTG
1 TTATCATTTTTTATTG
*
32717801 TTATTATTTTTTATT
1 TTATCATTTTTTATT
32717816 ACTTACTATC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.19, C:0.03, G:0.03, T:0.74
Consensus pattern (16 bp):
TTATCATTTTTTATTG
Found at i:32717977 original size:3 final size:3
Alignment explanation
Indices: 32717969--32718004 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
32717959 TCTTACTATC
32717969 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
32718005 TCTATTTATT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:32723384 original size:31 final size:31
Alignment explanation
Indices: 32723347--32723428 Score: 137
Period size: 31 Copynumber: 2.6 Consensus size: 31
32723337 CCGTGTGACC
* *
32723347 CACACGAGAGTGTGGGCCCACACGGATAGGG
1 CACACGAGCGTGTGAGCCCACACGGATAGGG
32723378 CACACGAGCGTGTGAGCCCACACGGATAGGG
1 CACACGAGCGTGTGAGCCCACACGGATAGGG
*
32723409 CACACGGGCGTGTGAGCCCA
1 CACACGAGCGTGTGAGCCCA
32723429 ATTTTGCTAA
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 48 1.00
ACGTcount: A:0.24, C:0.29, G:0.37, T:0.10
Consensus pattern (31 bp):
CACACGAGCGTGTGAGCCCACACGGATAGGG
Found at i:32725781 original size:17 final size:18
Alignment explanation
Indices: 32725750--32725783 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
32725740 GTATATATTA
32725750 AATTTATAATATTTTTAT
1 AATTTATAATATTTTTAT
*
32725768 AATTT-TAATTTTTTTA
1 AATTTATAATATTTTTA
32725784 AAACATTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (18 bp):
AATTTATAATATTTTTAT
Found at i:32725909 original size:15 final size:15
Alignment explanation
Indices: 32725889--32725920 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
32725879 ACATTAATTT
*
32725889 TATTTAATTTTAAAA
1 TATTTAATATTAAAA
32725904 TATTTAATATTAAAA
1 TATTTAATATTAAAA
32725919 TA
1 TA
32725921 ATACATAAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (15 bp):
TATTTAATATTAAAA
Found at i:32730051 original size:22 final size:22
Alignment explanation
Indices: 32730026--32730072 Score: 76
Period size: 22 Copynumber: 2.1 Consensus size: 22
32730016 TATATCTATT
**
32730026 GTATCTATATTTATTATGGTAC
1 GTATCTATATTTACGATGGTAC
32730048 GTATCTATATTTACGATGGTAC
1 GTATCTATATTTACGATGGTAC
32730070 GTA
1 GTA
32730073 CAGTCTACCT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.28, C:0.11, G:0.17, T:0.45
Consensus pattern (22 bp):
GTATCTATATTTACGATGGTAC
Found at i:32730396 original size:46 final size:46
Alignment explanation
Indices: 32730318--32730405 Score: 115
Period size: 46 Copynumber: 1.9 Consensus size: 46
32730308 ATTTACATTG
*
32730318 TTGAATGGTTTATCCACACCGTTAGAGCAGCTTTTATCTGCACCGT
1 TTGAATGGTTTATCCACACCGTTACAGCAGCTTTTATCTGCACCGT
* * * *
32730364 TTGAGTGGTTTATCCACACTG-TATCAGTAGCTTTTATTTGCA
1 TTGAATGGTTTATCCACACCGTTA-CAGCAGCTTTTATCTGCA
32730406 ATAATGAGTG
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
45 2 0.06
46 34 0.94
ACGTcount: A:0.22, C:0.20, G:0.19, T:0.39
Consensus pattern (46 bp):
TTGAATGGTTTATCCACACCGTTACAGCAGCTTTTATCTGCACCGT
Found at i:32730441 original size:45 final size:45
Alignment explanation
Indices: 32730365--32730451 Score: 108
Period size: 45 Copynumber: 1.9 Consensus size: 45
32730355 CTGCACCGTT
* *
32730365 TGAGTGGTTTATCCACACTGTATCAGTAGCTTTTATT-TGCAATAA
1 TGAGTGGTTTAACCACACTGTATCAGCAGC-TTTATTCTGCAATAA
32730410 TGAGTGGTTTAACCACA-TCGTA-CTAGCAGCTTTATTCTGCAA
1 TGAGTGGTTTAACCACACT-GTATC-AGCAGCTTTATTCTGCAA
32730452 ATATGTTGTG
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
44 8 0.22
45 29 0.78
ACGTcount: A:0.26, C:0.18, G:0.18, T:0.37
Consensus pattern (45 bp):
TGAGTGGTTTAACCACACTGTATCAGCAGCTTTATTCTGCAATAA
Found at i:32746165 original size:12 final size:12
Alignment explanation
Indices: 32746148--32746175 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
32746138 CAGCAAAACA
32746148 GTTTTTAGCGGC
1 GTTTTTAGCGGC
32746160 GTTTTTAGCGGC
1 GTTTTTAGCGGC
32746172 GTTT
1 GTTT
32746176 GAATAGAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.07, C:0.14, G:0.32, T:0.46
Consensus pattern (12 bp):
GTTTTTAGCGGC
Found at i:32746453 original size:114 final size:113
Alignment explanation
Indices: 32746204--32746456 Score: 278
Period size: 114 Copynumber: 2.2 Consensus size: 113
32746194 AAGGTTGAGC
*** * * *
32746204 ATTAGCGGCGCTTCCCTAAAACGTCGCAATAGATCGAGCATTAGCGATGTTTTAAAGAAAGCGCC
1 ATTAGCGGCGCTTCAGGAAAACGCCGCAAAAGATCGAGCATTAACGATGTTTTAAAGAAAGCGCC
* * * * *
32746269 GCTAAAAGATTCAGCAGAACGGCGTCGTTTACATTGAGTTTCCACGGA
66 GCTAAAAGATTAAGCAGAACGACGTCGTTTACATTAAGCTTACACGGA
*
32746317 ATTAGCGGCGCTT-AGGCAAAAACGCCGCAAAAGATCGAGCATTAAC-AGTGTTTT-TAGAAAAG
1 ATTAGCGGCGCTTCAGG--AAAACGCCGCAAAAGATCGAGCATTAACGA-TGTTTTAAAG-AAAG
* ** * **
32746379 CGCCGCTAAAATATTAAGGTGAACGACGTCGTTTAGATTAAGCTTACGTGGA
62 CGCCGCTAAAAGATTAAGCAGAACGACGTCGTTTACATTAAGCTTACACGGA
32746431 ATTAGCGGCGCTTTCAGGAAAACGCC
1 ATTAGCGGCGC-TTCAGGAAAACGCC
32746457 ACTATATGTC
Statistics
Matches: 116, Mismatches: 18, Indels: 11
0.80 0.12 0.08
Matches are distributed among these distances:
113 16 0.14
114 95 0.82
115 2 0.02
116 3 0.03
ACGTcount: A:0.32, C:0.21, G:0.25, T:0.23
Consensus pattern (113 bp):
ATTAGCGGCGCTTCAGGAAAACGCCGCAAAAGATCGAGCATTAACGATGTTTTAAAGAAAGCGCC
GCTAAAAGATTAAGCAGAACGACGTCGTTTACATTAAGCTTACACGGA
Found at i:32747186 original size:28 final size:28
Alignment explanation
Indices: 32747126--32747197 Score: 76
Period size: 28 Copynumber: 2.6 Consensus size: 28
32747116 ACTATTTAAA
32747126 GGTTTATGGATTATGGGTTTAGGGATTAT
1 GGTTTATGGATTAT-GGTTTAGGGATTAT
* *
32747155 -GTTTATGGCTTATGGTTTAAGGG-TTGT
1 GGTTTATGGATTATGGTTT-AGGGATTAT
* *
32747182 GGTTTAAGGGTTATGG
1 GGTTTATGGATTATGG
32747198 GCTAGTGGTT
Statistics
Matches: 37, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
27 8 0.22
28 29 0.78
ACGTcount: A:0.18, C:0.01, G:0.36, T:0.44
Consensus pattern (28 bp):
GGTTTATGGATTATGGTTTAGGGATTAT
Found at i:32747221 original size:29 final size:30
Alignment explanation
Indices: 32747182--32747248 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 30
32747172 TAAGGGTTGT
*
32747182 GGTTTAAGGGTTATGGGCTAGTGG-TTAGG
1 GGTTTAAGGGTTATGGGCTAATGGTTTAGG
* *
32747211 GGTTTATGGGTTATGGGTTAATGGTTTAGG
1 GGTTTAAGGGTTATGGGCTAATGGTTTAGG
32747241 GG-TTAAGG
1 GGTTTAAGG
32747249 CTTAGGGGTT
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
29 26 0.79
30 7 0.21
ACGTcount: A:0.18, C:0.01, G:0.43, T:0.37
Consensus pattern (30 bp):
GGTTTAAGGGTTATGGGCTAATGGTTTAGG
Found at i:32747229 original size:22 final size:21
Alignment explanation
Indices: 32747126--32747260 Score: 78
Period size: 22 Copynumber: 6.3 Consensus size: 21
32747116 ACTATTTAAA
*
32747126 GGTTTATGGATTATGGGTTTAG
1 GGTTTATGGGTTATGGG-TTAG
* * * *
32747148 GGATTAT-GTTTATGGCTTAT
1 GGTTTATGGGTTATGGGTTAG
* * *
32747168 GGTTTAAGGGTTGTGGTTTAAG
1 GGTTTATGGGTTATGGGTT-AG
*
32747190 GG-TTATGGGCTA-GTGGTTAGG
1 GGTTTATGGGTTATG-GGTTA-G
*
32747211 GGTTTATGGGTTATGGGTTAAT
1 GGTTTATGGGTTATGGGTT-AG
* * *
32747233 GGTTTAGGGGTTAAGGCTTAG
1 GGTTTATGGGTTATGGGTTAG
*
32747254 GGGTTAT
1 GGTTTAT
32747261 TATTTTGTGG
Statistics
Matches: 84, Mismatches: 22, Indels: 15
0.69 0.18 0.12
Matches are distributed among these distances:
20 10 0.12
21 34 0.40
22 38 0.45
23 2 0.02
ACGTcount: A:0.18, C:0.02, G:0.39, T:0.41
Consensus pattern (21 bp):
GGTTTATGGGTTATGGGTTAG
Found at i:32747234 original size:8 final size:7
Alignment explanation
Indices: 32747129--32747260 Score: 63
Period size: 7 Copynumber: 18.6 Consensus size: 7
32747119 ATTTAAAGGT
*
32747129 TTATGGA
1 TTATGGG
32747136 TTATGGG
1 TTATGGG
32747143 TT-TAGGG
1 TTAT-GGG
*
32747150 ATTAT-GT
1 -TTATGGG
*
32747157 TTATGGC
1 TTATGGG
*
32747164 TTATGGT
1 TTATGGG
*
32747171 TTAAGGG
1 TTATGGG
* *
32747178 TTGTGGT
1 TTATGGG
*
32747185 TTAAGGG
1 TTATGGG
32747192 TTATGGG
1 TTATGGG
*
32747199 CTA-GTGG
1 TTATG-GG
*
32747206 TTAGGGG
1 TTATGGG
32747213 TTTATGGG
1 -TTATGGG
32747221 TTATGGG
1 TTATGGG
*
32747228 TTAATGGT
1 TT-ATGGG
*
32747236 TTAGGGG
1 TTATGGG
* *
32747243 TTAAGGC
1 TTATGGG
*
32747250 TTAGGGG
1 TTATGGG
32747257 TTAT
1 TTAT
32747261 TATTTTGTGG
Statistics
Matches: 93, Mismatches: 24, Indels: 16
0.70 0.18 0.12
Matches are distributed among these distances:
6 6 0.06
7 71 0.76
8 15 0.16
9 1 0.01
ACGTcount: A:0.18, C:0.02, G:0.38, T:0.42
Consensus pattern (7 bp):
TTATGGG
Found at i:32747245 original size:15 final size:15
Alignment explanation
Indices: 32747206--32747259 Score: 65
Period size: 15 Copynumber: 3.7 Consensus size: 15
32747196 GGGCTAGTGG
* *
32747206 TTAGGGGTTTATGGG
1 TTAGGGGTTAATGGC
* *
32747221 TTATGGGTTAATGGT
1 TTAGGGGTTAATGGC
32747236 TTAGGGGTTAA-GGC
1 TTAGGGGTTAATGGC
32747250 TTAGGGGTTA
1 TTAGGGGTTA
32747260 TTATTTTGTG
Statistics
Matches: 34, Mismatches: 5, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
14 12 0.35
15 22 0.65
ACGTcount: A:0.19, C:0.02, G:0.41, T:0.39
Consensus pattern (15 bp):
TTAGGGGTTAATGGC
Found at i:32747489 original size:21 final size:21
Alignment explanation
Indices: 32747463--32747506 Score: 79
Period size: 21 Copynumber: 2.1 Consensus size: 21
32747453 TTATGGTTAG
*
32747463 GGGATATAGTTTAGGGTTTAA
1 GGGATATAGTTTAGAGTTTAA
32747484 GGGATATAGTTTAGAGTTTAA
1 GGGATATAGTTTAGAGTTTAA
32747505 GG
1 GG
32747507 TTATAGGGAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.30, C:0.00, G:0.34, T:0.36
Consensus pattern (21 bp):
GGGATATAGTTTAGAGTTTAA
Found at i:32747501 original size:28 final size:28
Alignment explanation
Indices: 32747470--32747537 Score: 86
Period size: 28 Copynumber: 2.4 Consensus size: 28
32747460 TAGGGGATAT
*
32747470 AGTTTAGGGTT-TAAGGGATATAGTTTAG
1 AGTTTAAGGTTAT-AGGGATATAGTTTAG
32747498 AGTTTAAGGTTATAGGGATATAGTTTA-
1 AGTTTAAGGTTATAGGGATATAGTTTAG
32747525 ATGGTTTAAGGTT
1 A--GTTTAAGGTT
32747538 TAGAGTTTTG
Statistics
Matches: 36, Mismatches: 1, Indels: 5
0.86 0.02 0.12
Matches are distributed among these distances:
27 1 0.03
28 24 0.67
29 11 0.31
ACGTcount: A:0.29, C:0.00, G:0.29, T:0.41
Consensus pattern (28 bp):
AGTTTAAGGTTATAGGGATATAGTTTAG
Found at i:32749341 original size:22 final size:22
Alignment explanation
Indices: 32749313--32749366 Score: 74
Period size: 22 Copynumber: 2.5 Consensus size: 22
32749303 AAATTTTGGC
32749313 AGCCCTCTGCATCGCCT-TCAGT
1 AGCCCTCTGCATCG-CTGTCAGT
**
32749335 AGCCCTCTGCATCGCTGTTGGT
1 AGCCCTCTGCATCGCTGTCAGT
32749357 AGCCCTCTGC
1 AGCCCTCTGC
32749367 TACATCTCCA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
21 2 0.07
22 27 0.93
ACGTcount: A:0.11, C:0.39, G:0.22, T:0.28
Consensus pattern (22 bp):
AGCCCTCTGCATCGCTGTCAGT
Found at i:32750868 original size:105 final size:105
Alignment explanation
Indices: 32750681--32751220 Score: 879
Period size: 105 Copynumber: 5.2 Consensus size: 105
32750671 ATTTTAAATA
* * *
32750681 TTTTATTTAATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTTAATATGT
1 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAATATTT
* * *
32750746 TATTTTATTTTATTTTAATCAAGAAAAATATTTTGTCTAC
66 TATTTGATTTTAATTTAATCACGAAAAATATTTTGTCTAC
32750786 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAATATTT
1 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAATATTT
* *
32750851 TATTTGATTTTAATTTAATCACGGAAAATATTTTCTCTAC
66 TATTTGATTTTAATTTAATCACGAAAAATATTTTGTCTAC
* * * *
32750891 TTCTATTTTATTTTAAAATTACATAATTAAATTAAATTGTTTTTAAAGTTTTATTTTAAATATTT
1 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAATATTT
*
32750956 TATTTGATTTTAATTTAATCACGGAAAATATTTTGTCTAC
66 TATTTGATTTTAATTTAATCACGAAAAATATTTTGTCTAC
32750996 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAATATTT
1 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAATATTT
*
32751061 TATTTGA-TTTAATTTAATCACTAAAAATATTTTGTCTAC
66 TATTTGATTTTAATTTAATCACGAAAAATATTTTGTCTAC
** *
32751100 TTTTATTTTATTTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTCGAATATG
1 TTTTATTTTA-TTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAATATT
* *
32751165 TTATTTTATTTTATTTTAATCACGAAAAATA--TTGTCTAC
65 TTATTTGATTTTAATTTAATCACGAAAAATATTTTGTCTAC
32751204 TTTTATTTTATTTTTAA
1 TTTTATTTTATTTTTAA
32751221 TCTAATAACC
Statistics
Matches: 408, Mismatches: 25, Indels: 6
0.93 0.06 0.01
Matches are distributed among these distances:
103 7 0.02
104 58 0.14
105 323 0.79
106 20 0.05
ACGTcount: A:0.34, C:0.06, G:0.05, T:0.55
Consensus pattern (105 bp):
TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAATATTT
TATTTGATTTTAATTTAATCACGAAAAATATTTTGTCTAC
Found at i:32750898 original size:57 final size:56
Alignment explanation
Indices: 32750834--32751109 Score: 149
Period size: 48 Copynumber: 5.2 Consensus size: 56
32750824 GTATTTAAAG
32750834 TTTTATTTTAAATATTTTATTTGATTTTAATTTAATCACGGAAAATATTTTCTCTAC
1 TTTTATTTTAAATATTTTATTTGATTTTAATTTAATCACGGAAAATATTTT-TCTAC
* * * ** ** * * ** *
32750891 TTCTATTTT--AT-TTTAAAATT-A-CATAA-TTAA--A-TTAAATTGTTTTTAAAG
1 TTTTATTTTAAATATTT-TATTTGATTTTAATTTAATCACGGAAAATATTTTTCTAC
32750939 TTTTATTTTAAATATTTTATTTGATTTTAATTTAATCACGGAAAATATTTTGTCTAC
1 TTTTATTTTAAATATTTTATTTGATTTTAATTTAATCACGGAAAATATTTT-TCTAC
* ** ** * * * ** *
32750996 TTTTATTTT--AT-TTTTAAATT-A-CCTAA-TTAA--A-TTAAATTGTATTTAAAG
1 TTTTATTTTAAATATTTT-ATTTGATTTTAATTTAATCACGGAAAATATTTTTCTAC
**
32751044 TTTTATTTTAAATATTTTATTTGA-TTTAATTTAATCACTAAAAATATTTTGTCTAC
1 TTTTATTTTAAATATTTTATTTGATTTTAATTTAATCACGGAAAATATTTT-TCTAC
32751100 TTTTATTTTA
1 TTTTATTTTA
32751110 TTTTTTAAAT
Statistics
Matches: 153, Mismatches: 45, Indels: 43
0.63 0.19 0.18
Matches are distributed among these distances:
48 21 0.14
49 15 0.10
50 12 0.08
51 12 0.08
52 15 0.10
53 10 0.07
54 10 0.07
55 19 0.12
56 20 0.13
57 19 0.12
ACGTcount: A:0.34, C:0.06, G:0.05, T:0.55
Consensus pattern (56 bp):
TTTTATTTTAAATATTTTATTTGATTTTAATTTAATCACGGAAAATATTTTTCTAC
Found at i:32756923 original size:21 final size:21
Alignment explanation
Indices: 32756890--32756951 Score: 88
Period size: 21 Copynumber: 3.0 Consensus size: 21
32756880 TTAGAGTGGA
*
32756890 GGCAGCAGAGAGGGAGGCAGC
1 GGCAGCAGCGAGGGAGGCAGC
*
32756911 GGTAGCAGCGAGGGAGGCAGC
1 GGCAGCAGCGAGGGAGGCAGC
* *
32756932 GGCAGTAACGAGGGAGGCAG
1 GGCAGCAGCGAGGGAGGCAG
32756952 AGCAGAGCAA
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 36 1.00
ACGTcount: A:0.27, C:0.18, G:0.52, T:0.03
Consensus pattern (21 bp):
GGCAGCAGCGAGGGAGGCAGC
Found at i:32762476 original size:49 final size:49
Alignment explanation
Indices: 32762420--32762644 Score: 288
Period size: 49 Copynumber: 4.5 Consensus size: 49
32762410 CTAGTACGCA
32762420 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACG
* * * ** * *
32762469 TAGTAGCCTACACTTAGTACTACACACGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACC-AATTATCCGGTACACG
* * * * ** *
32762519 TAGTAGCCTGCACTTAGTACTACACAAGTGATCGAAGTTATCGGGTATGCA
1 TAGTAGCCTGCACTTAGTACTACACATGCGA-CCAA-TTATCCGGTACACG
*
32762570 TAGTAGCCTCCACTTAGTACTACACATGCGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACG
32762619 TAGTAGCCTGCACTTAGTACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
32762645 CGTGACCTCA
Statistics
Matches: 147, Mismatches: 26, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
49 65 0.44
50 46 0.31
51 36 0.24
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.25
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACG
Found at i:32762642 original size:100 final size:99
Alignment explanation
Indices: 32762420--32762651 Score: 304
Period size: 100 Copynumber: 2.3 Consensus size: 99
32762410 CTAGTACGCA
* * *
32762420 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACGTAGTAGCCTACACTTA
1 TAGTAGCCTGCACTTAGTACTACACAAGTGACCAATTATCCGGTACACATAGTAGCCTACACTTA
* *
32762485 GTACTACACACGTGACCTAACCATCTGATACACG
66 GTACTACACACGCGACCTAACCATCCGATACACG
* * ** *
32762519 TAGTAGCCTGCACTTAGTACTACACAAGTGATCGAAGTTATCGGGTATGCATAGTAGCCTCCACT
1 TAGTAGCCTGCACTTAGTACTACACAAGTGA-CCAA-TTATCCGGTACACATAGTAGCCTACACT
* ** *
32762584 TAGTACTACACATGCGACC-AATTATCCGGTACACG
64 TAGTACTACACACGCGACCTAACCATCCGATACACG
*
32762619 TAGTAGCCTGCACTTAGTACTACACACGTGACC
1 TAGTAGCCTGCACTTAGTACTACACAAGTGACC
32762652 TCACAATAGA
Statistics
Matches: 115, Mismatches: 16, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
99 30 0.26
100 45 0.39
101 40 0.35
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.25
Consensus pattern (99 bp):
TAGTAGCCTGCACTTAGTACTACACAAGTGACCAATTATCCGGTACACATAGTAGCCTACACTTA
GTACTACACACGCGACCTAACCATCCGATACACG
Found at i:32765128 original size:20 final size:20
Alignment explanation
Indices: 32765099--32765143 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
32765089 AGCACATGTA
*
32765099 TTCATAAAATTTTAGAAATT
1 TTCATAAAATTTTACAAATT
* *
32765119 TTCATCAAATTTTACAACTT
1 TTCATAAAATTTTACAAATT
32765139 TTCAT
1 TTCAT
32765144 TTTAGTCCCT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.38, C:0.13, G:0.02, T:0.47
Consensus pattern (20 bp):
TTCATAAAATTTTACAAATT
Found at i:32765245 original size:20 final size:19
Alignment explanation
Indices: 32765208--32765246 Score: 51
Period size: 20 Copynumber: 2.0 Consensus size: 19
32765198 TATCAACAAT
*
32765208 ATTTTAATTTCTACCATAA
1 ATTTTAATTTCCACCATAA
*
32765227 ATTTATAATTTCCAGCATAA
1 ATTT-TAATTTCCACCATAA
32765247 TACACCCATG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 4 0.24
20 13 0.76
ACGTcount: A:0.38, C:0.15, G:0.03, T:0.44
Consensus pattern (19 bp):
ATTTTAATTTCCACCATAA
Found at i:32775228 original size:20 final size:20
Alignment explanation
Indices: 32775199--32775243 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
32775189 AGCACATGTA
* *
32775199 TTCATAAAATTTTAGAATTT
1 TTCATAAAATTTTACAACTT
*
32775219 TTCATCAAATTTTACAACTT
1 TTCATAAAATTTTACAACTT
32775239 TTCAT
1 TTCAT
32775244 TTTAGTCCCT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.36, C:0.13, G:0.02, T:0.49
Consensus pattern (20 bp):
TTCATAAAATTTTACAACTT
Found at i:32778035 original size:6 final size:6
Alignment explanation
Indices: 32778017--32778122 Score: 101
Period size: 6 Copynumber: 17.3 Consensus size: 6
32778007 AAGAAACATT
* * *
32778017 ATCAGA A-CTAGA ATCAGA ATCAGA ATCAAA ATCAGA ATTAG- GTGACAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA
* *
32778066 ATCAGA ATCAGA ATCAGT ATCAGGTA A-CAGA ATCAAA ATCAGA ATCAGA
1 ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA ATCAGA
32778115 ATCAGA AT
1 ATCAGA AT
32778123 GTGAATGCAA
Statistics
Matches: 82, Mismatches: 10, Indels: 16
0.76 0.09 0.15
Matches are distributed among these distances:
5 4 0.05
6 70 0.85
7 6 0.07
8 2 0.02
ACGTcount: A:0.49, C:0.15, G:0.17, T:0.19
Consensus pattern (6 bp):
ATCAGA
Found at i:32778068 original size:31 final size:31
Alignment explanation
Indices: 32778031--32778119 Score: 133
Period size: 31 Copynumber: 2.9 Consensus size: 31
32778021 GAACTAGAAT
* * *
32778031 CAGAATCAGAATCAAAATCAGAATTAGGTGA
1 CAGAATCAGAATCAGAATCAGAATCAGGTAA
*
32778062 CAGAATCAGAATCAGAATCAGTATCAGGTAA
1 CAGAATCAGAATCAGAATCAGAATCAGGTAA
*
32778093 CAGAATCAAAATCAGAATCAGAATCAG
1 CAGAATCAGAATCAGAATCAGAATCAG
32778120 AATGTGAATG
Statistics
Matches: 52, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 52 1.00
ACGTcount: A:0.48, C:0.16, G:0.18, T:0.18
Consensus pattern (31 bp):
CAGAATCAGAATCAGAATCAGAATCAGGTAA
Found at i:32778556 original size:27 final size:27
Alignment explanation
Indices: 32778549--32779176 Score: 702
Period size: 27 Copynumber: 23.3 Consensus size: 27
32778539 CGAGGGTTTC
32778549 TCGATAATTCTACCCTACAGGGGTATT
1 TCGATAATTCTACCCTACAGGGGTATT
*
32778576 TC-AGT-ATTCCTACCCTACAAGGGTATT
1 TCGA-TAATT-CTACCCTACAGGGGTATT
32778603 TCGATAATTCTACCCTACAGGGGTATT
1 TCGATAATTCTACCCTACAGGGGTATT
*
32778630 TCGGTAATTCTACCCTACAGGGGTATT
1 TCGATAATTCTACCCTACAGGGGTATT
*
32778657 TCGATAATTCTACCCCACAGGGGTATT
1 TCGATAATTCTACCCTACAGGGGTATT
32778684 TCGATAATTCTACCCTACAGGGGTATT
1 TCGATAATTCTACCCTACAGGGGTATT
* *
32778711 TCGGTAATTCTACCCTACAAGGGTATT
1 TCGATAATTCTACCCTACAGGGGTATT
*
32778738 TCGATAATTCTACCCTACAAGGGTATT
1 TCGATAATTCTACCCTACAGGGGTATT
32778765 TCGATAATTCTACCCTACAGGGGTATT
1 TCGATAATTCTACCCTACAGGGGTATT
* * *
32778792 TCGGTAATTCTACCTTATAGGGGTATT
1 TCGATAATTCTACCCTACAGGGGTATT
* **
32778819 TCGGTAATTCTATTCTACAGGGGTATT
1 TCGATAATTCTACCCTACAGGGGTATT
*
32778846 TC-AGTAATTCTACCTTACAGGGGTATT
1 TCGA-TAATTCTACCCTACAGGGGTATT
*
32778873 TC-AGTAATTCTACCTTACAGGGGTATT
1 TCGA-TAATTCTACCCTACAGGGGTATT
* *
32778900 TCAATAATTTTACCCTACAGGGGTATT
1 TCGATAATTCTACCCTACAGGGGTATT
* * *
32778927 TC-AGTAATTCTACACTACAGAGGCA-T
1 TCGA-TAATTCTACCCTACAGGGGTATT
* * * *
32778953 TCGGTAATTCTACCTTGCAAGGGTATT
1 TCGATAATTCTACCCTACAGGGGTATT
* *
32778980 T-TAGTAATTCTACCCTACAAGGGTATT
1 TCGA-TAATTCTACCCTACAGGGGTATT
* * * *
32779007 TTGGTAATTTTACCTTACAGGGGTATT
1 TCGATAATTCTACCCTACAGGGGTATT
* * * *
32779034 T-TAGTAATTGTACCTTATAGGGGTATT
1 TCGA-TAATTCTACCCTACAGGGGTATT
* * * *
32779061 TCGGTAATTTTACCTTACAGGAGT-TT
1 TCGATAATTCTACCCTACAGGGGTATT
**
32779087 TC-AGTAATTCTACTTTACAGGGGTATT
1 TCGA-TAATTCTACCCTACAGGGGTATT
* * *
32779114 TCGGTAATTTTACCTTACAGGGGTATT
1 TCGATAATTCTACCCTACAGGGGTATT
*
32779141 TC-AGTAATTCTACCTTACAGGGGTATT
1 TCGA-TAATTCTACCCTACAGGGGTATT
*
32779168 TCGGTAATT
1 TCGATAATT
32779177 TTACAAATCG
Statistics
Matches: 521, Mismatches: 62, Indels: 36
0.84 0.10 0.06
Matches are distributed among these distances:
26 44 0.08
27 472 0.91
28 5 0.01
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.37
Consensus pattern (27 bp):
TCGATAATTCTACCCTACAGGGGTATT
Found at i:32779194 original size:27 final size:27
Alignment explanation
Indices: 32779164--32779257 Score: 86
Period size: 27 Copynumber: 3.5 Consensus size: 27
32779154 CTTACAGGGG
32779164 TATTTCGGTAATTTTACAAA-TCGAGGA
1 TATTTCGGTAATTTTACAAACT-GAGGA
* * * *
32779191 TATTTGGGTAATTTTATAAACTGGGGG
1 TATTTCGGTAATTTTACAAACTGAGGA
* *
32779218 TATTTTGGTAATTTTAC-AACT-AGGGG
1 TATTTCGGTAATTTTACAAACTGA-GGA
*
32779244 TATTTCAGTAATTT
1 TATTTCGGTAATTT
32779258 GGTAAACTAA
Statistics
Matches: 56, Mismatches: 9, Indels: 5
0.80 0.13 0.07
Matches are distributed among these distances:
26 19 0.34
27 36 0.64
28 1 0.02
ACGTcount: A:0.29, C:0.07, G:0.21, T:0.43
Consensus pattern (27 bp):
TATTTCGGTAATTTTACAAACTGAGGA
Found at i:32779203 original size:54 final size:54
Alignment explanation
Indices: 32778553--32779176 Score: 801
Period size: 54 Copynumber: 11.6 Consensus size: 54
32778543 GGTTTCTCGA
* * *
32778553 TAATTCTACCCTACAGGGGTATTTCAGT-ATTCCTACCCTACAAGGGTATTTC-G
1 TAATTCTACCCTACAGGGGTATTTCGGTAATT-CTACCTTACAGGGGTATTTCAG
*
32778606 ATAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTC-G
1 -TAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCTTACAGGGGTATTTCAG
* * * *
32778660 ATAATTCTACCCCACAGGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCGG
1 -TAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCTTACAGGGGTATTTCAG
* * * *
32778715 TAATTCTACCCTACAAGGGTATTTCGATAATTCTACCCTACAAGGGTATTTC-G
1 TAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCTTACAGGGGTATTTCAG
* *
32778768 ATAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCTTATAGGGGTATTTCGG
1 -TAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCTTACAGGGGTATTTCAG
** *
32778823 TAATTCTATTCTACAGGGGTATTTCAGTAATTCTACCTTACAGGGGTATTTCAG
1 TAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCTTACAGGGGTATTTCAG
* ** * *
32778877 TAATTCTACCTTACAGGGGTATTTCAATAATTTTACCCTACAGGGGTATTTCAG
1 TAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCTTACAGGGGTATTTCAG
* * * * * *
32778931 TAATTCTACACTACAGAGGCA-TTCGGTAATTCTACCTTGCAAGGGTATTTTAG
1 TAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCTTACAGGGGTATTTCAG
* * * *
32778984 TAATTCTACCCTACAAGGGTATTTTGGTAATTTTACCTTACAGGGGTATTTTAG
1 TAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCTTACAGGGGTATTTCAG
* * * * *
32779038 TAATTGTACCTTATAGGGGTATTTCGGTAATTTTACCTTACAGGAGT-TTTCAG
1 TAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCTTACAGGGGTATTTCAG
** *
32779091 TAATTCTACTTTACAGGGGTATTTCGGTAATTTTACCTTACAGGGGTATTTCAG
1 TAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCTTACAGGGGTATTTCAG
*
32779145 TAATTCTACCTTACAGGGGTATTTCGGTAATT
1 TAATTCTACCCTACAGGGGTATTTCGGTAATT
32779177 TTACAAATCG
Statistics
Matches: 510, Mismatches: 54, Indels: 12
0.89 0.09 0.02
Matches are distributed among these distances:
53 91 0.18
54 414 0.81
55 5 0.01
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.37
Consensus pattern (54 bp):
TAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCTTACAGGGGTATTTCAG
Found at i:32779243 original size:107 final size:107
Alignment explanation
Indices: 32778586--32779256 Score: 524
Period size: 108 Copynumber: 6.2 Consensus size: 107
32778576 TCAGTATTCC
* * * * **
32778586 TACCCTACAAGGGTATTTC-GATAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAG
1 TACCTTACAGGGGTATTTCAG-TAATTCTACCTTACAGGGGTATTTCGGTAATTTTACAATACAG
* *** * * *
32778650 GGGTATTTC-GATAATTCTACCCCACAGGGGTATTTCGATAATTC
65 GAGT-TTTCAG-TAATTCTACTAAACAGGGGTATTTTGGTAATTT
* * * * * * **
32778694 TACCCTACAGGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCGATAATTCTACCCTACAAG
1 TACCTTACAGGGGTATTTCAGTAATTCTACCTTACAGGGGTATTTCGGTAATTTTACAATAC-AG
*** * *
32778759 G-GTATTTC-GATAATTCTACCCTACAGGGGTATTTCGGTAATTC
65 GAGT-TTTCAG-TAATTCTACTAAACAGGGGTATTTTGGTAATTT
* * * * * **
32778802 TACCTTATAGGGGTATTTCGGTAATTCTA-TTCTACAGGGGTATTTCAGTAATTCTACCTTACAG
1 TACCTTACAGGGGTATTTCAGTAATTCTACCT-TACAGGGGTATTTCGGTAATTTTACAATACAG
* * ***
32778866 GGGTATTTCAGTAATTCTACCT-TACAGGGGTATTTCAATAATTT
65 GAGT-TTTCAGTAATTCTA-CTAAACAGGGGTATTTTGGTAATTT
* * * * ** *
32778910 TACCCTACAGGGGTATTTCAGTAATTCTACAC-TACAGAGGCA-TTCGGTAATTCTACCTTGCAA
1 TACCTTACAGGGGTATTTCAGTAATTCTAC-CTTACAGGGGTATTTCGGTAATTTTACAATAC-A
* *** *
32778973 GG-GTATTTTAGTAATTCTACCCTACAAGGGTATTTTGGTAATTT
64 GGAGT-TTTCAGTAATTCTACTAAACAGGGGTATTTTGGTAATTT
* * * **
32779017 TACCTTACAGGGGTATTTTAGTAATTGTACCTTATAGGGGTATTTCGGTAATTTTACCTTACAGG
1 TACCTTACAGGGGTATTTCAGTAATTCTACCTTACAGGGGTATTTCGGTAATTTTACAATACAGG
** *
32779082 AGTTTTCAGTAATTCTACTTTACAGGGGTATTTCGGTAATTT
66 AGTTTTCAGTAATTCTACTAAACAGGGGTATTTTGGTAATTT
32779124 TACCTTACAGGGGTATTTCAGTAATTCTACCTTACAGGGGTATTTCGGTAATTTTACAA-ATCGA
1 TACCTTACAGGGGTATTTCAGTAATTCTACCTTACAGGGGTATTTCGGTAATTTTACAATA-C-A
** * *
32779188 GGA-TATTTGGGTAATTTTA-TAAACTGGGGGTATTTTGGTAATTT
64 GGAGT-TTTCAGTAATTCTACTAAAC-AGGGGTATTTTGGTAATTT
*
32779232 TA-C-AACTAGGGGTATTTCAGTAATT
1 TACCTTAC-AGGGGTATTTCAGTAATT
32779257 TGGTAAACTA
Statistics
Matches: 488, Mismatches: 57, Indels: 37
0.84 0.10 0.06
Matches are distributed among these distances:
106 5 0.01
107 203 0.42
108 274 0.56
109 6 0.01
ACGTcount: A:0.26, C:0.17, G:0.20, T:0.37
Consensus pattern (107 bp):
TACCTTACAGGGGTATTTCAGTAATTCTACCTTACAGGGGTATTTCGGTAATTTTACAATACAGG
AGTTTTCAGTAATTCTACTAAACAGGGGTATTTTGGTAATTT
Found at i:32779265 original size:27 final size:25
Alignment explanation
Indices: 32779105--32779266 Score: 76
Period size: 27 Copynumber: 6.0 Consensus size: 25
32779095 TCTACTTTAC
* *
32779105 AGGGGTATTTCGGTAATTTT-ACCTT
1 AGGGGTATTTCAGTAATTTTAAAC-T
* *
32779130 ACAGGGGTATTTCAGTAATTCT-ACCTT
1 --AGGGGTATTTCAGTAATTTTAAAC-T
* *
32779157 ACAGGGGTATTTCGGTAATTTTACAAAT
1 --AGGGGTATTTCAGTAATTTTA-AACT
* * **
32779185 CGAGGATATTTGGGTAATTTTATAAACT
1 AG-GGGTATTTCAGTAA-TTT-TAAACT
* **
32779213 GGGGGTATTTTGGTAATTTTACAACT
1 AGGGGTATTTCAGTAATTTTA-AACT
32779239 AGGGGTATTTCAGTAATTTGGTAAACT
1 AGGGGTATTTCAGTAATTT--TAAACT
32779266 A
1 A
32779267 AAGTATTCTA
Statistics
Matches: 111, Mismatches: 16, Indels: 16
0.78 0.11 0.11
Matches are distributed among these distances:
25 2 0.02
26 24 0.22
27 72 0.65
28 10 0.09
29 3 0.03
ACGTcount: A:0.28, C:0.10, G:0.23, T:0.39
Consensus pattern (25 bp):
AGGGGTATTTCAGTAATTTTAAACT
Found at i:32782292 original size:15 final size:16
Alignment explanation
Indices: 32782272--32782301 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
32782262 TAATTTGTAA
32782272 AAATGGG-AAAATAAT
1 AAATGGGTAAAATAAT
32782287 AAATGGGTAAAATAA
1 AAATGGGTAAAATAA
32782302 AAAAAATTGT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.60, C:0.00, G:0.20, T:0.20
Consensus pattern (16 bp):
AAATGGGTAAAATAAT
Found at i:32790227 original size:17 final size:18
Alignment explanation
Indices: 32790193--32790228 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
32790183 TTTTAACTTT
*
32790193 TTTAATTAAATTATAATA
1 TTTAATTAAATTAGAATA
32790211 TTTAATT-AATTAGAATA
1 TTTAATTAAATTAGAATA
32790228 T
1 T
32790229 GTGATTAATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 10 0.59
18 7 0.41
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (18 bp):
TTTAATTAAATTAGAATA
Found at i:32790235 original size:17 final size:17
Alignment explanation
Indices: 32790195--32790237 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 17
32790185 TTAACTTTTT
* *
32790195 TAATTAAATTATAATATT
1 TAATT-AATTAGAATATG
32790213 TAATTAATTAGAATATG
1 TAATTAATTAGAATATG
*
32790230 TGATTAAT
1 TAATTAAT
32790238 AATGCTTCTT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
17 17 0.77
18 5 0.23
ACGTcount: A:0.47, C:0.00, G:0.07, T:0.47
Consensus pattern (17 bp):
TAATTAATTAGAATATG
Found at i:32791141 original size:10 final size:9
Alignment explanation
Indices: 32791119--32791144 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
32791109 TATTTTAGAA
32791119 TTTTTAAAC
1 TTTTTAAAC
32791128 TTTTTAAAC
1 TTTTTAAAC
32791137 TTTTTAAA
1 TTTTTAAA
32791145 AAAATTTGAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.35, C:0.08, G:0.00, T:0.58
Consensus pattern (9 bp):
TTTTTAAAC
Found at i:32793118 original size:9 final size:9
Alignment explanation
Indices: 32793104--32793137 Score: 50
Period size: 9 Copynumber: 3.8 Consensus size: 9
32793094 AATGATTATC
32793104 TAATAATAT
1 TAATAATAT
*
32793113 TAATAATAC
1 TAATAATAT
32793122 TAATAATAT
1 TAATAATAT
*
32793131 CAATAAT
1 TAATAAT
32793138 TAAAAATAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.56, C:0.06, G:0.00, T:0.38
Consensus pattern (9 bp):
TAATAATAT
Found at i:32793126 original size:18 final size:18
Alignment explanation
Indices: 32793103--32793137 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
32793093 TAATGATTAT
*
32793103 CTAATAATATTAATAATA
1 CTAATAATATCAATAATA
32793121 CTAATAATATCAATAAT
1 CTAATAATATCAATAAT
32793138 TAAAAATAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.54, C:0.09, G:0.00, T:0.37
Consensus pattern (18 bp):
CTAATAATATCAATAATA
Found at i:32794485 original size:50 final size:50
Alignment explanation
Indices: 32794367--32794552 Score: 201
Period size: 50 Copynumber: 3.7 Consensus size: 50
32794357 GTGAGAACAA
* ***
32794367 ATGTGTAGTACTATGTGCAGGCTACTATGTGTTTAAAATGGTTTTAGGTCAC
1 ATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAAATGG--TTAGGTCAC
* * * *
32794419 GTGTGTAGTACCAAGTGCAGGCTACTACGTGTACCAAATGGTTAGGTCGC
1 ATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAAATGGTTAGGTCAC
* ** * * *
32794469 ATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAGCTTTGATCAC
1 ATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAAAT-GGTTAGGTCAC
* *
32794520 ATGTGTGGTACTAAGTGCAGGCCACTATGTGTA
1 ATGTGTAGTACTAAGTGCAGGCTACTATGTGTA
32794553 AAAGATAGCT
Statistics
Matches: 112, Mismatches: 21, Indels: 3
0.82 0.15 0.02
Matches are distributed among these distances:
50 41 0.37
51 37 0.33
52 34 0.30
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.31
Consensus pattern (50 bp):
ATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAAATGGTTAGGTCAC
Found at i:32794539 original size:51 final size:51
Alignment explanation
Indices: 32794367--32794601 Score: 211
Period size: 51 Copynumber: 4.6 Consensus size: 51
32794357 GTGAGAACAA
* *** * * *
32794367 ATGTGTAGTACTATGTGCAGGCTACTATGTGTTTAAAATGGTTTTAGGTCAC
1 ATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAGCTTT-GGTCAC
* * * * * * *
32794419 GTGTGTAGTACCAAGTGCAGGCTACTACGTGTACCAAAT-GGTTAGGTCGC
1 ATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAGCTTTGGTCAC
* * *
32794469 ATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAGCTTTGATCAC
1 ATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAGCTTTGGTCAC
* * **
32794520 ATGTGTGGTACTAAGTGCAGGCCACTATGTGTAAAAGATAGCTTTGGTCAC
1 ATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAGCTTTGGTCAC
* * * * * *
32794571 AAGTGTGGTACTATGTGAAGGCCACTTTGTG
1 ATGTGTAGTACTAAGTGCAGGCTACTATGTG
32794602 AAGAAGGTAG
Statistics
Matches: 151, Mismatches: 31, Indels: 3
0.82 0.17 0.02
Matches are distributed among these distances:
50 38 0.25
51 81 0.54
52 32 0.21
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.31
Consensus pattern (51 bp):
ATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAGCTTTGGTCAC
Found at i:32794613 original size:51 final size:51
Alignment explanation
Indices: 32794369--32794646 Score: 188
Period size: 51 Copynumber: 5.5 Consensus size: 51
32794359 GAGAACAAAT
* * * * * **
32794369 GTGTAGTACTATGTGCAGGCTACTATGTGTTTAAA-ATGGTTTTAGGTCACGT
1 GTGTGGTACTATGTGCAGGCCACTATGTG-TAAAAGATAGCTTT-GGTCACAA
* * * * * * * * * *
32794421 GTGTAGTACCAAGTGCAGGCTACTACGTGTACCAA-AT-GGTTAGGTCGCAT
1 GTGTGGTACTATGTGCAGGCCACTATGTGTA-AAAGATAGCTTTGGTCACAA
* * * * *** * *
32794471 GTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAGCTTTGATCACAT
1 GTGTGGTACTATGTGCAGGCCACTATGTGTAAAAGATAGCTTTGGTCACAA
*
32794522 GTGTGGTACTAAGTGCAGGCCACTATGTGTAAAAGATAGCTTTGGTCACAA
1 GTGTGGTACTATGTGCAGGCCACTATGTGTAAAAGATAGCTTTGGTCACAA
* * * *
32794573 GTGTGGTACTATGTGAAGGCCACTTTGTG-AAGAAGGTAGCTTT-GACTACAA
1 GTGTGGTACTATGTGCAGGCCACTATGTGTAA-AAGATAGCTTTGGTC-ACAA
*
32794624 GGGTGGTACTATGTGCAGGCCAC
1 GTGTGGTACTATGTGCAGGCCAC
32794647 CGGGCATCCG
Statistics
Matches: 188, Mismatches: 33, Indels: 11
0.81 0.14 0.05
Matches are distributed among these distances:
49 1 0.01
50 40 0.21
51 117 0.62
52 30 0.16
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.29
Consensus pattern (51 bp):
GTGTGGTACTATGTGCAGGCCACTATGTGTAAAAGATAGCTTTGGTCACAA
Found at i:32797845 original size:32 final size:33
Alignment explanation
Indices: 32797766--32797866 Score: 150
Period size: 33 Copynumber: 3.1 Consensus size: 33
32797756 TACCTAAATG
* *
32797766 GTACAACTGGAAAAGGAAATGTACACTGTGTGT
1 GTACAACTTGAAAAGGAAATGTACACTTTGTGT
*
32797799 GTACAACTTGAAAAGGAAACGTACACTTTGTGT
1 GTACAACTTGAAAAGGAAATGTACACTTTGTGT
* *
32797832 GTAC-ACTTGAAAAGGAAATGTACGCCTTGTGT
1 GTACAACTTGAAAAGGAAATGTACACTTTGTGT
32797864 GTA
1 GTA
32797867 TAATGTGAAA
Statistics
Matches: 62, Mismatches: 6, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
32 28 0.45
33 34 0.55
ACGTcount: A:0.35, C:0.14, G:0.25, T:0.27
Consensus pattern (33 bp):
GTACAACTTGAAAAGGAAATGTACACTTTGTGT
Found at i:32797908 original size:31 final size:31
Alignment explanation
Indices: 32797871--32798018 Score: 179
Period size: 31 Copynumber: 4.8 Consensus size: 31
32797861 TGTGTATAAT
* * * *
32797871 GTGAAAAGTGGTAGATTCGGCTACCTGATTA
1 GTGAAAAGTGGTAGCTCCGGCTACCCGATCA
* *
32797902 GTGAAAAGTGGTAGCTCCGGCTACCTGATTA
1 GTGAAAAGTGGTAGCTCCGGCTACCCGATCA
*
32797933 GTGAAAAGTGGTAGCTCCAGCTACCCGATCA
1 GTGAAAAGTGGTAGCTCCGGCTACCCGATCA
* *
32797964 GTGAAAAGTGATAGCTCCAGCTACCCGATCA
1 GTGAAAAGTGGTAGCTCCGGCTACCCGATCA
* * * *
32797995 GTGAATATTGGTATCTTCGGCTAC
1 GTGAAAAGTGGTAGCTCCGGCTAC
32798019 AAGTGACAAG
Statistics
Matches: 105, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 105 1.00
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (31 bp):
GTGAAAAGTGGTAGCTCCGGCTACCCGATCA
Found at i:32798171 original size:27 final size:27
Alignment explanation
Indices: 32798108--32798172 Score: 103
Period size: 27 Copynumber: 2.4 Consensus size: 27
32798098 TAGTTGAACT
* *
32798108 ATGGCAAAGCGATAAAGTGTGCCAATC
1 ATGGCAAAGTGATAAAGTGTGCCAAAC
*
32798135 ATGGCAAAGTGATATAGTGTGCCAAAC
1 ATGGCAAAGTGATAAAGTGTGCCAAAC
32798162 ATGGCAAAGTG
1 ATGGCAAAGTG
32798173 TTCAGTGATC
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 35 1.00
ACGTcount: A:0.37, C:0.15, G:0.28, T:0.20
Consensus pattern (27 bp):
ATGGCAAAGTGATAAAGTGTGCCAAAC
Found at i:32798237 original size:56 final size:56
Alignment explanation
Indices: 32798161--32798285 Score: 216
Period size: 56 Copynumber: 2.2 Consensus size: 56
32798151 GTGTGCCAAA
*
32798161 CATGGCAAAGTGTTCAGTGATCAGTGATGAATTGATGGATAAGACCATAGTTGGA-C
1 CATGGCAAAGTGTTCAGTGATCAGTGATGAATTGACGGATAAGACCATAGTT-GATC
*
32798217 CATGGCAAAGTGTTCAGTGATCAGTGATGAATTGACGGATAAGACCATGGTTGATC
1 CATGGCAAAGTGTTCAGTGATCAGTGATGAATTGACGGATAAGACCATAGTTGATC
32798273 CATGGCAAAGTGT
1 CATGGCAAAGTGT
32798286 GAAACATAGA
Statistics
Matches: 66, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
55 2 0.03
56 64 0.97
ACGTcount: A:0.31, C:0.14, G:0.29, T:0.26
Consensus pattern (56 bp):
CATGGCAAAGTGTTCAGTGATCAGTGATGAATTGACGGATAAGACCATAGTTGATC
Found at i:32802152 original size:53 final size:53
Alignment explanation
Indices: 32802086--32802186 Score: 166
Period size: 53 Copynumber: 1.9 Consensus size: 53
32802076 ATAAGTGCGC
* *
32802086 CCGTTTAAGACCATAGCTGCGCTATGGCATCGGTGCAATGTGATAATGTGACT
1 CCGTATAAGACCATAGCTGCGCTATGGCATCGGTACAATGTGATAATGTGACT
* *
32802139 CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATG
1 CCGTATAAGACCATAGCTGCGCTATGGCATCGGTACAATGTGATAATG
32802187 AAGCACTCAA
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
53 44 1.00
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.28
Consensus pattern (53 bp):
CCGTATAAGACCATAGCTGCGCTATGGCATCGGTACAATGTGATAATGTGACT
Found at i:32809053 original size:53 final size:53
Alignment explanation
Indices: 32808987--32809087 Score: 166
Period size: 53 Copynumber: 1.9 Consensus size: 53
32808977 ATAAGTGCGC
* *
32808987 CCGTTTAAGACCATAGCTGCGCTATGGCATCGGTGCAATGTGATAATGTGACT
1 CCGTATAAGACCATAGCTGCGCTATGGCATCGGTACAATGTGATAATGTGACT
* *
32809040 CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATG
1 CCGTATAAGACCATAGCTGCGCTATGGCATCGGTACAATGTGATAATG
32809088 AAGCACTCAA
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
53 44 1.00
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.28
Consensus pattern (53 bp):
CCGTATAAGACCATAGCTGCGCTATGGCATCGGTACAATGTGATAATGTGACT
Found at i:32812357 original size:30 final size:30
Alignment explanation
Indices: 32812321--32812380 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
32812311 TTCCCGAACC
*
32812321 TAGGGGCAAAAGTGTAATTATGCAAAAGTT
1 TAGGGGCAAAAATGTAATTATGCAAAAGTT
* *
32812351 TAGGGGCAAAAATGTAATTTTGCCAAAGTT
1 TAGGGGCAAAAATGTAATTATGCAAAAGTT
32812381 CGTATTAAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.38, C:0.08, G:0.25, T:0.28
Consensus pattern (30 bp):
TAGGGGCAAAAATGTAATTATGCAAAAGTT
Found at i:32836246 original size:27 final size:27
Alignment explanation
Indices: 32836208--32836261 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
32836198 TATAAATATG
32836208 ATAGTTAATTATTAATGACTTACAAAC
1 ATAGTTAATTATTAATGACTTACAAAC
32836235 ATAGTTAATTATTAATGACTTACAAAC
1 ATAGTTAATTATTAATGACTTACAAAC
32836262 CAGTTAAATG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.44, C:0.11, G:0.07, T:0.37
Consensus pattern (27 bp):
ATAGTTAATTATTAATGACTTACAAAC
Found at i:32846486 original size:44 final size:45
Alignment explanation
Indices: 32846432--32846643 Score: 157
Period size: 45 Copynumber: 4.8 Consensus size: 45
32846422 AAATCCAAAA
* * *
32846432 ATCTCATCTCCCTGAAGTAGCAGTGGAACAGATTGAAG-TTGTAG
1 ATCTTATCTCCCTGAAGTAGCAGTGGAGCAGATTGAAGATGGTAG
* * * * *
32846476 ATCTTATCTCCTTGAAGTTGCAGTGGAGTAGATCGAAGATGGTGG
1 ATCTTATCTCCCTGAAGTAGCAGTGGAGCAGATTGAAGATGGTAG
* *****
32846521 ATCTTATCTTCCTGAAGTTA-CAGTGGAGCAGATTGAAGCCACCAG
1 ATCTTATCTCCCTGAAG-TAGCAGTGGAGCAGATTGAAGATGGTAG
* * * * *
32846566 -CCTTATCTCCCTAAAGTTGCAGTGGAGCAGACTGAAGAAAGCG-A-
1 ATCTTATCTCCCTGAAGTAGCAGTGGAGCAGATTGAAG-ATG-GTAG
* *
32846610 ATCTTAGT-TCCCTGAAGTTGCAGTGGAACAGATT
1 ATCTTA-TCTCCCTGAAGTAGCAGTGGAGCAGATT
32846644 AAAGTTACAA
Statistics
Matches: 129, Mismatches: 32, Indels: 13
0.74 0.18 0.07
Matches are distributed among these distances:
43 1 0.01
44 62 0.48
45 64 0.50
46 2 0.02
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.27
Consensus pattern (45 bp):
ATCTTATCTCCCTGAAGTAGCAGTGGAGCAGATTGAAGATGGTAG
Found at i:32846537 original size:45 final size:44
Alignment explanation
Indices: 32846432--32846602 Score: 148
Period size: 44 Copynumber: 3.9 Consensus size: 44
32846422 AAATCCAAAA
* * * * *
32846432 ATCTCATCTCCCTGAAGTAGCAGTGGAACAGATTGAAGTTGTAG
1 ATCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTGAAGTGGTAG
* * *
32846476 ATCTTATC-TCCTTGAAGTTGCAGTGGAGTAGATCGAAGATGGTGG
1 ATCTTATCTTCC-TGAAGTTGCAGTGGAGCAGATTGAAG-TGGTAG
* ****
32846521 ATCTTATCTTCCTGAAGTTACAGTGGAGCAGATTGAAGCCACCAG
1 ATCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTGAAG-TGGTAG
* * * *
32846566 -CCTTATCTCCCTAAAGTTGCAGTGGAGCAGACTGAAG
1 ATCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTGAAG
32846603 AAAGCGAATC
Statistics
Matches: 102, Mismatches: 22, Indels: 6
0.78 0.17 0.05
Matches are distributed among these distances:
43 2 0.02
44 61 0.60
45 36 0.35
46 3 0.03
ACGTcount: A:0.27, C:0.19, G:0.26, T:0.27
Consensus pattern (44 bp):
ATCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTGAAGTGGTAG
Found at i:32846603 original size:89 final size:89
Alignment explanation
Indices: 32846478--32846643 Score: 210
Period size: 89 Copynumber: 1.9 Consensus size: 89
32846468 AGTTGTAGAT
* * * ** * * *
32846478 CTTATCTCCTTGAAGTTGCAGTGGAGTAGATCGAAGATGGTGGATCTTA-TCTTCCTGAAGTTAC
1 CTTATCTCCCTAAAGTTGCAGTGGAGCAGATCGAAGAAAGCGAATCTTAGT-TCCCTGAAGTTAC
*
32846542 AGTGGAGCAGATTGAAGCCACCAGC
65 AGTGGAACAGATTGAAGCCACCAGC
*
32846567 CTTATCTCCCTAAAGTTGCAGTGGAGCAGA-CTGAAGAAAGCGAATCTTAGTTCCCTGAAGTTGC
1 CTTATCTCCCTAAAGTTGCAGTGGAGCAGATC-GAAGAAAGCGAATCTTAGTTCCCTGAAGTTAC
32846631 AGTGGAACAGATT
65 AGTGGAACAGATT
32846644 AAAGTTACAA
Statistics
Matches: 65, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
88 1 0.02
89 63 0.97
90 1 0.02
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.27
Consensus pattern (89 bp):
CTTATCTCCCTAAAGTTGCAGTGGAGCAGATCGAAGAAAGCGAATCTTAGTTCCCTGAAGTTACA
GTGGAACAGATTGAAGCCACCAGC
Found at i:32846782 original size:143 final size:143
Alignment explanation
Indices: 32846514--32847119 Score: 731
Period size: 143 Copynumber: 4.3 Consensus size: 143
32846504 TAGATCGAAG
* * *
32846514 ATGGTGGATCTTATCTTCCTGAAGTTACAGTGGAGCAGATTGAAGCCACCAGCCTTATCTCCCTA
1 ATGGCGGATCTTATCTTCCTGAAGTTACAGTGGAGCAGATTGAAGCCACCAGCCTTATCTTCCTG
** * * *
32846579 AAGTTGCAGTGGAGCAGACTGAAGAAAGCGAATCTTAGTTCCCT-GAAGTTGCAGTGGAACAGAT
66 AAGTTGCAGCAGAGCAGACTGAAGACAGCGAATCTTATTTCCCTGGCA-TTGCAGTGGAACAGAT
*
32846643 TAAAGTTACAAATT
130 TAAAGCTACAAATT
* * * * * * *
32846657 ATGGCAGATTTTATCTCCCTGAAGTTGCAGTGGAGCATATTGAAGCCACCAACCTTATTTTCCTG
1 ATGGCGGATCTTATCTTCCTGAAGTTACAGTGGAGCAGATTGAAGCCACCAGCCTTATCTTCCTG
* * * * *
32846722 AAGTTACAGCAGAGCAAATTAAAGACAGTC-AATCTTATTTCCCTGGCATCGCAGTGGAACAGAT
66 AAGTTGCAGCAGAGCAGACTGAAGACAG-CGAATCTTATTTCCCTGGCATTGCAGTGGAACAGAT
*
32846786 TGAAGCTACAAATT
130 TAAAGCTACAAATT
* * * *
32846800 ATGGCGGATCTTATCTTCCTGAAGTTGCAATAGAGCAGATTGAAGCCACTAGCCTTATCTTCCTG
1 ATGGCGGATCTTATCTTCCTGAAGTTACAGTGGAGCAGATTGAAGCCACCAGCCTTATCTTCCTG
* * *
32846865 AAGTTGCAGCAGAGCAGACTGAAGACAGCGAATCTTATTTCCCTGACGTTGTAGTGGAACAGATT
66 AAGTTGCAGCAGAGCAGACTGAAGACAGCGAATCTTATTTCCCTGGCATTGCAGTGGAACAGATT
32846930 AAAGCTACAAATT
131 AAAGCTACAAATT
* *
32846943 ATGGCGGATCTTATCTTCCTGAAGTTACAGTGGAGCAGATTGAAGCCATCAGCCTTATCTTCTTG
1 ATGGCGGATCTTATCTTCCTGAAGTTACAGTGGAGCAGATTGAAGCCACCAGCCTTATCTTCCTG
* * * * ** * *
32847008 AAGTTGCAGCGGAGTAGACTGAAGATAGCGAATCTTATTTTCCT-AAAGTTACAGTGGAGCAGAT
66 AAGTTGCAGCAGAGCAGACTGAAGACAGCGAATCTTATTTCCCTGGCA-TTGCAGTGGAACAGAT
* *
32847072 TGAAGCTACAAGTT
130 TAAAGCTACAAATT
* * *
32847086 A---CAGATCTTATC-TCTCTAAAGTTACAGTAGAGCA
1 ATGGCGGATCTTATCTTC-CTGAAGTTACAGTGGAGCA
32847120 AGTCAAAGCC
Statistics
Matches: 398, Mismatches: 60, Indels: 13
0.85 0.13 0.03
Matches are distributed among these distances:
139 2 0.01
140 27 0.07
142 2 0.01
143 364 0.91
144 3 0.01
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.28
Consensus pattern (143 bp):
ATGGCGGATCTTATCTTCCTGAAGTTACAGTGGAGCAGATTGAAGCCACCAGCCTTATCTTCCTG
AAGTTGCAGCAGAGCAGACTGAAGACAGCGAATCTTATTTCCCTGGCATTGCAGTGGAACAGATT
AAAGCTACAAATT
Found at i:32846839 original size:54 final size:49
Alignment explanation
Indices: 32846803--32847119 Score: 163
Period size: 44 Copynumber: 6.7 Consensus size: 49
32846793 ACAAATTATG
* *
32846803 GCGGATCTTATCTTCCTGAAGTTGCAATAGAGCAGATTGAAGC-CACTA
1 GCGGATCTTATCTTCCTGAAGTTGCAGTAGAGCAGATTGAAGCACATTA
* *
32846851 GC----CTTATCTTCCTGAAGTTGCAGCAGAGCAGACTGAAG-AC---A
1 GCGGATCTTATCTTCCTGAAGTTGCAGTAGAGCAGATTGAAGCACATTA
* * * * * *
32846892 GCGAATCTTAT-TTCCCTGACGTTGTAGTGGAACAGATTAAAGCTACAAATTA
1 GCGGATCTTATCTT-CCTGAAGTTGCAGTAGAGCAGATTGAAGC-AC--ATTA
* * *
32846944 TGGCGGATCTTATCTTCCTGAAGTTACAGTGGAGCAGATTGAAGC-CATCA
1 --GCGGATCTTATCTTCCTGAAGTTGCAGTAGAGCAGATTGAAGCACATTA
* ** * *
32846994 GC----CTTATCTTCTTGAAGTTGCAGCGGAGTAGACTGAAG---A-TA
1 GCGGATCTTATCTTCCTGAAGTTGCAGTAGAGCAGATTGAAGCACATTA
* * * * *
32847035 GCGAATCTTATTTTCCTAAAGTTACAGTGGAGCAGATTGAAGCTACAAGTTA
1 GCGGATCTTATCTTCCTGAAGTTGCAGTAGAGCAGATTGAAGC-AC-A-TTA
* * *
32847087 -CAGATCTTATC-TCTCTAAAGTTACAGTAGAGCA
1 GCGGATCTTATCTTC-CTGAAGTTGCAGTAGAGCA
32847120 AGTCAAAGCC
Statistics
Matches: 207, Mismatches: 34, Indels: 53
0.70 0.12 0.18
Matches are distributed among these distances:
41 6 0.03
42 1 0.00
44 67 0.32
45 55 0.27
47 2 0.01
48 4 0.02
50 6 0.03
51 26 0.13
52 4 0.02
54 34 0.16
55 2 0.01
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.28
Consensus pattern (49 bp):
GCGGATCTTATCTTCCTGAAGTTGCAGTAGAGCAGATTGAAGCACATTA
Found at i:32847245 original size:95 final size:94
Alignment explanation
Indices: 32847006--32847256 Score: 229
Period size: 95 Copynumber: 2.6 Consensus size: 94
32846996 CTTATCTTCT
* * *
32847006 TGAAGTTGCAGCGGAGTAGACTGAAGA-TAGCGAATCTTATTT-TCCTAAAGTTACAGTGGAGCA
1 TGAAGTTGCAGCGGAGTAGACTGAA-ACTA--TAATCTTATTTCT-CTGAAGTTGCAGTGGAGCA
* * * *
32847069 GATTGAAGCTACAAGTTACAGATCTTATCTCTC
62 GATTGAAGCTACAAGTTACAAATCTCATATCCC
* * ** * * * * * ** *
32847102 TAAAGTTACAGTAGAGCA-AGTCAAAGCCATAAACCTTATCACTTTGAAGTTGCAGTGGAGCAGA
1 TGAAGTTGCAGCGGAGTAGACTGAAA-CTAT-AATCTTATTTCTCTGAAGTTGCAGTGGAGCAGA
32847166 TTGAAGCTACAAGTTACAAATCTCATATCCC
64 TTGAAGCTACAAGTTACAAATCTCATATCCC
* *
32847197 TGAAGTTGCAGCGGAGTAGATTGAAACTATAAGTCTTATTTCTCTGAAGTTGCGGTGGAG
1 TGAAGTTGCAGCGGAGTAGACTGAAACTATAA-TCTTATTTCTCTGAAGTTGCAGTGGAG
32847257 TGGATCAAAG
Statistics
Matches: 117, Mismatches: 32, Indels: 13
0.72 0.20 0.08
Matches are distributed among these distances:
94 3 0.03
95 94 0.80
96 20 0.17
ACGTcount: A:0.32, C:0.17, G:0.23, T:0.28
Consensus pattern (94 bp):
TGAAGTTGCAGCGGAGTAGACTGAAACTATAATCTTATTTCTCTGAAGTTGCAGTGGAGCAGATT
GAAGCTACAAGTTACAAATCTCATATCCC
Found at i:32847471 original size:14 final size:14
Alignment explanation
Indices: 32847452--32847485 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
32847442 TAAACAAACC
32847452 CAAACCAAACCCAA
1 CAAACCAAACCCAA
*
32847466 CAAACCAAGCCCAA
1 CAAACCAAACCCAA
32847480 CTAAAC
1 C-AAAC
32847486 TAAATCTAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 14 0.78
15 4 0.22
ACGTcount: A:0.53, C:0.41, G:0.03, T:0.03
Consensus pattern (14 bp):
CAAACCAAACCCAA
Found at i:32847866 original size:45 final size:45
Alignment explanation
Indices: 32847802--32847894 Score: 177
Period size: 45 Copynumber: 2.1 Consensus size: 45
32847792 AGGAGATTGA
32847802 TTCGAATAATAAAGGTTATCATCTTTTTCATTTTTTTCTTTATAT
1 TTCGAATAATAAAGGTTATCATCTTTTTCATTTTTTTCTTTATAT
*
32847847 TTCGAATAATGAAGGTTATCATCTTTTTCATTTTTTTCTTTATAT
1 TTCGAATAATAAAGGTTATCATCTTTTTCATTTTTTTCTTTATAT
32847892 TTC
1 TTC
32847895 TTCTTCGAAA
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 47 1.00
ACGTcount: A:0.25, C:0.12, G:0.08, T:0.56
Consensus pattern (45 bp):
TTCGAATAATAAAGGTTATCATCTTTTTCATTTTTTTCTTTATAT
Found at i:32848591 original size:3 final size:3
Alignment explanation
Indices: 32848583--32848649 Score: 73
Period size: 3 Copynumber: 22.7 Consensus size: 3
32848573 TAATTTTAAC
* * * * *
32848583 ATT ATT ATT ATT ATT -TT ACT ATT ATA ATT TTT ATT ATT AAT ACT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
*
32848630 ATC ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT AT
32848650 AATACTATTA
Statistics
Matches: 52, Mismatches: 11, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
2 2 0.04
3 50 0.96
ACGTcount: A:0.34, C:0.04, G:0.00, T:0.61
Consensus pattern (3 bp):
ATT
Found at i:32848631 original size:24 final size:24
Alignment explanation
Indices: 32848586--32848645 Score: 86
Period size: 24 Copynumber: 2.5 Consensus size: 24
32848576 TTTTAACATT
*
32848586 ATTATTATTATT-TTACTATTATA
1 ATTATTATTATTAATACTATTATA
* *
32848609 ATTTTTATTATTAATACTATTATC
1 ATTATTATTATTAATACTATTATA
32848633 ATTATTATTATTA
1 ATTATTATTATTA
32848646 TTATAATACT
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
23 11 0.34
24 21 0.66
ACGTcount: A:0.35, C:0.05, G:0.00, T:0.60
Consensus pattern (24 bp):
ATTATTATTATTAATACTATTATA
Found at i:32850303 original size:13 final size:13
Alignment explanation
Indices: 32850285--32850309 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
32850275 ACAAACTTTT
32850285 TATTTTTAATATA
1 TATTTTTAATATA
32850298 TATTTTTAATAT
1 TATTTTTAATAT
32850310 TTTATCTTAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (13 bp):
TATTTTTAATATA
Found at i:32853317 original size:27 final size:27
Alignment explanation
Indices: 32853266--32853319 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
32853256 GACGATAGTG
* *
32853266 ACGACGACAATGATGAGGCTGGCGGCA
1 ACGACGACAATGATGAGGATAGCGGCA
* *
32853293 ACGACGACAATGATTATGATAGCGGCA
1 ACGACGACAATGATGAGGATAGCGGCA
32853320 GTGACAATGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.33, C:0.20, G:0.31, T:0.15
Consensus pattern (27 bp):
ACGACGACAATGATGAGGATAGCGGCA
Found at i:32853434 original size:18 final size:18
Alignment explanation
Indices: 32853385--32853435 Score: 50
Period size: 18 Copynumber: 2.8 Consensus size: 18
32853375 CAGAGACAAC
32853385 GACAACAATGACGATGGT
1 GACAACAATGACGATGGT
* * **
32853403 GGCAATAACAACGA-GGAT
1 GACAACAATGACGATGG-T
32853421 GACAACAATGACGAT
1 GACAACAATGACGAT
32853436 AACAACTATG
Statistics
Matches: 23, Mismatches: 8, Indels: 3
0.68 0.24 0.09
Matches are distributed among these distances:
17 2 0.09
18 21 0.91
ACGTcount: A:0.43, C:0.18, G:0.25, T:0.14
Consensus pattern (18 bp):
GACAACAATGACGATGGT
Found at i:32862566 original size:12 final size:12
Alignment explanation
Indices: 32862549--32862583 Score: 61
Period size: 12 Copynumber: 2.9 Consensus size: 12
32862539 TGGATTTGGA
32862549 CGACAGTGACAG
1 CGACAGTGACAG
32862561 CGACAGTGACAG
1 CGACAGTGACAG
*
32862573 CGACAATGACA
1 CGACAGTGACA
32862584 ATGACGACGG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.37, C:0.26, G:0.29, T:0.09
Consensus pattern (12 bp):
CGACAGTGACAG
Found at i:32863929 original size:20 final size:20
Alignment explanation
Indices: 32863904--32863976 Score: 71
Period size: 20 Copynumber: 3.7 Consensus size: 20
32863894 TCTCTCTCAA
32863904 CAAAAATTACAAATAATTTT
1 CAAAAATTACAAATAATTTT
32863924 CAAAAA-TACAAAGTAATTTT
1 CAAAAATTACAAA-TAATTTT
* *
32863944 -TAAAATTCCAAAT-ATTTAT
1 CAAAAATTACAAATAATTT-T
* *
32863963 AAAAAATTTCAAAT
1 CAAAAATTACAAAT
32863977 TTTATATTTT
Statistics
Matches: 45, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
18 4 0.09
19 12 0.27
20 29 0.64
ACGTcount: A:0.55, C:0.10, G:0.01, T:0.34
Consensus pattern (20 bp):
CAAAAATTACAAATAATTTT
Found at i:32863967 original size:19 final size:19
Alignment explanation
Indices: 32863945--32863982 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
32863935 AGTAATTTTT
32863945 AAAATTCCAAATATTTATAA
1 AAAATTCCAAAT-TTTATAA
*
32863965 AAAATTTCAAATTTTATA
1 AAAATTCCAAATTTTATA
32863983 TTTTTTAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 6 0.35
20 11 0.65
ACGTcount: A:0.53, C:0.08, G:0.00, T:0.39
Consensus pattern (19 bp):
AAAATTCCAAATTTTATAA
Found at i:32863995 original size:19 final size:19
Alignment explanation
Indices: 32863973--32864010 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
32863963 AAAAAATTTC
*
32863973 AAATTTTATATTTTTTAAA
1 AAATTATATATTTTTTAAA
*
32863992 AAATTATATTTTTTTTAAA
1 AAATTATATATTTTTTAAA
32864011 TTCTAAAGAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (19 bp):
AAATTATATATTTTTTAAA
Found at i:32866080 original size:40 final size:40
Alignment explanation
Indices: 32866025--32866115 Score: 128
Period size: 40 Copynumber: 2.3 Consensus size: 40
32866015 GGCCAACCCA
* *
32866025 TGTGGCCCACACGGCCTAACACACGACCTACACATGCTTG
1 TGTGGCCCACACGGCCTAACACACAACATACACATGCTTG
* **
32866065 TGTGGCCCACTCGGCCTAACACACAACATACACATGCCCG
1 TGTGGCCCACACGGCCTAACACACAACATACACATGCTTG
*
32866105 TGTGGTCCACA
1 TGTGGCCCACA
32866116 TGACCCAAAT
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 44 1.00
ACGTcount: A:0.25, C:0.37, G:0.20, T:0.18
Consensus pattern (40 bp):
TGTGGCCCACACGGCCTAACACACAACATACACATGCTTG
Found at i:32868762 original size:24 final size:25
Alignment explanation
Indices: 32868714--32868762 Score: 64
Period size: 24 Copynumber: 2.0 Consensus size: 25
32868704 TTTTATTCTT
* **
32868714 AAAAATTTAGAAATAACAATTTTAA
1 AAAAATTTAGAAATAAAAAAATTAA
32868739 AAAAATTTA-AAATAAAAAAATTAA
1 AAAAATTTAGAAATAAAAAAATTAA
32868763 TGGTTCATTT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
24 12 0.57
25 9 0.43
ACGTcount: A:0.67, C:0.02, G:0.02, T:0.29
Consensus pattern (25 bp):
AAAAATTTAGAAATAAAAAAATTAA
Found at i:32868935 original size:33 final size:33
Alignment explanation
Indices: 32868861--32868926 Score: 125
Period size: 33 Copynumber: 2.0 Consensus size: 33
32868851 TTATAAGTAA
32868861 AATAG-TTTTTTTAAAACCCACAAACAAGATTT
1 AATAGTTTTTTTTAAAACCCACAAACAAGATTT
32868893 AATAGTTTTTTTTAAAACCCACAAACAAGATTT
1 AATAGTTTTTTTTAAAACCCACAAACAAGATTT
32868926 A
1 A
32868927 CTTTTTTTTA
Statistics
Matches: 33, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
32 5 0.15
33 28 0.85
ACGTcount: A:0.44, C:0.15, G:0.06, T:0.35
Consensus pattern (33 bp):
AATAGTTTTTTTTAAAACCCACAAACAAGATTT
Found at i:32879286 original size:11 final size:11
Alignment explanation
Indices: 32879270--32879296 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
32879260 GTTTTTATTT
32879270 TTTTTAATTAC
1 TTTTTAATTAC
32879281 TTTTTAATTAC
1 TTTTTAATTAC
32879292 TTTTT
1 TTTTT
32879297 TTCTTTCTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.22, C:0.07, G:0.00, T:0.70
Consensus pattern (11 bp):
TTTTTAATTAC
Found at i:32879307 original size:10 final size:10
Alignment explanation
Indices: 32879294--32879347 Score: 56
Period size: 10 Copynumber: 5.2 Consensus size: 10
32879284 TTAATTACTT
32879294 TTTTTCTTTC
1 TTTTTCTTTC
32879304 TTTTTCTTTC
1 TTTTTCTTTC
32879314 TCTTTT-TTTC
1 T-TTTTCTTTC
*
32879324 TTTCTTTTTTC
1 TTT-TTCTTTC
*
32879335 TTCTTCTCTTC
1 TTTTTCT-TTC
32879346 TT
1 TT
32879348 CTTGTCTCAA
Statistics
Matches: 38, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
9 2 0.05
10 21 0.55
11 15 0.39
ACGTcount: A:0.00, C:0.22, G:0.00, T:0.78
Consensus pattern (10 bp):
TTTTTCTTTC
Found at i:32879313 original size:14 final size:13
Alignment explanation
Indices: 32879292--32879344 Score: 63
Period size: 14 Copynumber: 3.8 Consensus size: 13
32879282 TTTTAATTAC
32879292 TTTT-TTTCTTTCT
1 TTTTCTTTCTTT-T
32879305 TTTTCTTTCTCTTT
1 TTTTCTTTCT-TTT
32879319 TTTTCTTTCTTTT
1 TTTTCTTTCTTTT
32879332 TTCTTCTTCTCTT
1 TT-TTCTT-TCTT
32879345 CTTCTTGTCT
Statistics
Matches: 36, Mismatches: 0, Indels: 6
0.86 0.00 0.14
Matches are distributed among these distances:
13 9 0.25
14 21 0.58
15 6 0.17
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (13 bp):
TTTTCTTTCTTTT
Found at i:32879535 original size:21 final size:21
Alignment explanation
Indices: 32879502--32879541 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
32879492 GCTTGCTTGC
32879502 CTTCCTTTCTTTTTCTTTTCA
1 CTTCCTTTCTTTTTCTTTTCA
* * *
32879523 CTTCTTTTTTTTTTTTTTT
1 CTTCCTTTCTTTTTCTTTT
32879542 TTGCTTGCTT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.03, C:0.20, G:0.00, T:0.78
Consensus pattern (21 bp):
CTTCCTTTCTTTTTCTTTTCA
Found at i:32879985 original size:29 final size:28
Alignment explanation
Indices: 32879949--32880044 Score: 104
Period size: 28 Copynumber: 3.4 Consensus size: 28
32879939 ATTTAGGATT
*
32879949 AATGAAATTTAATGAAGTTTAGGGGTCTA
1 AATGAAATTTAA-GAAGTTTAGGGGTCAA
* * *
32879978 AGTGAAATTTAAGAAATTTAAGGGTCAA
1 AATGAAATTTAAGAAGTTTAGGGGTCAA
*
32880006 AATGAAATTTAGGAAAAGTTTAGGGGTC-A
1 AATGAAATTTA--AGAAGTTTAGGGGTCAA
*
32880035 AATGCAATTT
1 AATGAAATTT
32880045 TATTTTTAAA
Statistics
Matches: 56, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
28 23 0.41
29 21 0.38
30 12 0.21
ACGTcount: A:0.42, C:0.04, G:0.23, T:0.31
Consensus pattern (28 bp):
AATGAAATTTAAGAAGTTTAGGGGTCAA
Found at i:32880237 original size:99 final size:100
Alignment explanation
Indices: 32880123--32880304 Score: 291
Period size: 102 Copynumber: 1.8 Consensus size: 100
32880113 TACAGTACCA
32880123 AAGCAATCTAGCTAGACACTA-T-AATTGAACATTTTACGACTAAATTTAACATTA-AACTCATT
1 AAGCAATCTAGCTAGACACTAGTAAATTGAACATTTTACGACTAAATTTAA-ATTAGAACTCATT
32880185 AATGTCATTACTTATTTTTTGAAAATTACATTGGTAC
65 -ATGTCATTACTTATTTTTTGAAAATTACATTGGTAC
*
32880222 AAGCAATCTTA-CTAGACACTAGGTAAATTGAACATTTTACGACTAAATTTAATTTAGAACTCAT
1 AAGCAATC-TAGCTAGACACTA-GTAAATTGAACATTTTACGACTAAATTTAAATTAGAACTCAT
32880286 TATGTCATTACTTATTTTT
64 TATGTCATTACTTATTTTT
32880305 GAACTTACTA
Statistics
Matches: 77, Mismatches: 1, Indels: 8
0.90 0.01 0.09
Matches are distributed among these distances:
99 18 0.23
100 2 0.03
101 22 0.29
102 35 0.45
ACGTcount: A:0.37, C:0.15, G:0.09, T:0.38
Consensus pattern (100 bp):
AAGCAATCTAGCTAGACACTAGTAAATTGAACATTTTACGACTAAATTTAAATTAGAACTCATTA
TGTCATTACTTATTTTTTGAAAATTACATTGGTAC
Found at i:32880487 original size:19 final size:20
Alignment explanation
Indices: 32880463--32880513 Score: 68
Period size: 19 Copynumber: 2.6 Consensus size: 20
32880453 ACTTTATGTA
32880463 GTATTGATACCATGCC-AAG
1 GTATTGATACCATGCCTAAG
* *
32880482 GTATTGATACCTTGCCTTAG
1 GTATTGATACCATGCCTAAG
*
32880502 GTACTGATACCA
1 GTATTGATACCA
32880514 AAGCATGGTA
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
19 15 0.56
20 12 0.44
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.31
Consensus pattern (20 bp):
GTATTGATACCATGCCTAAG
Found at i:32880509 original size:20 final size:19
Alignment explanation
Indices: 32880467--32880513 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 19
32880457 TATGTAGTAT
*
32880467 TGATACCATGCCAAGGTAT
1 TGATACCATGCCAAGGTAC
* *
32880486 TGATACCTTGCCTTAGGTAC
1 TGATACCATGCC-AAGGTAC
32880506 TGATACCA
1 TGATACCA
32880514 AAGCATGGTA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
19 11 0.48
20 12 0.52
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (19 bp):
TGATACCATGCCAAGGTAC
Found at i:32882672 original size:29 final size:30
Alignment explanation
Indices: 32882611--32882672 Score: 72
Period size: 29 Copynumber: 2.1 Consensus size: 30
32882601 CAGGGATTGT
* **
32882611 ATTAAATTAATCCTTTTTATTATGAAATGA
1 ATTAAATTAATCCTTTATATTATGAAAAAA
* *
32882641 ATTAATTTAAT-CTTTATATTATTAAAAAA
1 ATTAAATTAATCCTTTATATTATGAAAAAA
32882670 ATT
1 ATT
32882673 GAATAATGTC
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
29 17 0.63
30 10 0.37
ACGTcount: A:0.44, C:0.05, G:0.03, T:0.48
Consensus pattern (30 bp):
ATTAAATTAATCCTTTATATTATGAAAAAA
Found at i:32882799 original size:3 final size:3
Alignment explanation
Indices: 32882791--32882816 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
32882781 CTGAAAACAT
32882791 ATA ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA AT
32882817 TTAAGGTAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
ATA
Found at i:32883159 original size:15 final size:14
Alignment explanation
Indices: 32883112--32883155 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 14
32883102 TTGGAATTTA
32883112 ATTTTTATATTTTT
1 ATTTTTATATTTTT
* *
32883126 ATTTTTAAGAATTTT
1 ATTTTT-ATATTTTT
*
32883141 ATTTTTATTTTTTT
1 ATTTTTATATTTTT
32883155 A
1 A
32883156 ATTTAAAATT
Statistics
Matches: 24, Mismatches: 5, Indels: 2
0.77 0.16 0.06
Matches are distributed among these distances:
14 12 0.50
15 12 0.50
ACGTcount: A:0.25, C:0.00, G:0.02, T:0.73
Consensus pattern (14 bp):
ATTTTTATATTTTT
Found at i:32887294 original size:27 final size:28
Alignment explanation
Indices: 32887247--32887300 Score: 76
Period size: 27 Copynumber: 2.0 Consensus size: 28
32887237 CATTTATTTT
*
32887247 TATATTATAAAAAATAAAAATT-AATTA
1 TATATTAAAAAAAATAAAAATTCAATTA
32887274 TATATTAAATAAAAAT-AAAATTCAATT
1 TATATTAAA-AAAAATAAAAATTCAATT
32887301 CAGTTTCGAG
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
27 14 0.58
28 10 0.42
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.37
Consensus pattern (28 bp):
TATATTAAAAAAAATAAAAATTCAATTA
Found at i:32890891 original size:26 final size:24
Alignment explanation
Indices: 32890861--32890910 Score: 73
Period size: 26 Copynumber: 2.0 Consensus size: 24
32890851 AAATAAAAAA
*
32890861 ATTTAAAAATATAATAAATCAAATAT
1 ATTTAAAAACATAA-AAA-CAAATAT
32890887 ATTTAAAAACATAAAAACAAATAT
1 ATTTAAAAACATAAAAACAAATAT
32890911 TAAAACAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 7 0.30
25 3 0.13
26 13 0.57
ACGTcount: A:0.64, C:0.06, G:0.00, T:0.30
Consensus pattern (24 bp):
ATTTAAAAACATAAAAACAAATAT
Found at i:32890922 original size:22 final size:21
Alignment explanation
Indices: 32890889--32890939 Score: 59
Period size: 21 Copynumber: 2.4 Consensus size: 21
32890879 TCAAATATAT
*
32890889 TTAAAA-ACATAAAAACAAATA
1 TTAAAACAAATAAAAACAAA-A
**
32890910 TTAAAACAAATAAAAATGAAA
1 TTAAAACAAATAAAAACAAAA
32890931 TTAAAACAA
1 TTAAAACAA
32890940 TTCTTAAAAC
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
21 16 0.62
22 10 0.38
ACGTcount: A:0.71, C:0.08, G:0.02, T:0.20
Consensus pattern (21 bp):
TTAAAACAAATAAAAACAAAA
Found at i:32908219 original size:16 final size:15
Alignment explanation
Indices: 32908185--32908229 Score: 51
Period size: 15 Copynumber: 3.1 Consensus size: 15
32908175 TATAAACTAA
32908185 AAAATATAAATTATG
1 AAAATATAAATTATG
32908200 AAAATATGAAATT-TG
1 AAAATAT-AAATTATG
*
32908215 TAAA-A-AAATTATG
1 AAAATATAAATTATG
32908228 AA
1 AA
32908230 TTTATATATA
Statistics
Matches: 26, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
12 5 0.19
13 3 0.12
14 1 0.04
15 12 0.46
16 5 0.19
ACGTcount: A:0.60, C:0.00, G:0.09, T:0.31
Consensus pattern (15 bp):
AAAATATAAATTATG
Found at i:32908696 original size:20 final size:19
Alignment explanation
Indices: 32908673--32908710 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
32908663 TCAATTTTAA
32908673 ATAATTATTAATATTTTTTT
1 ATAATTATTAA-ATTTTTTT
*
32908693 ATAATTTTTAAATTTTTT
1 ATAATTATTAAATTTTTT
32908711 ATAGTTTGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 7 0.41
20 10 0.59
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (19 bp):
ATAATTATTAAATTTTTTT
Found at i:32908815 original size:10 final size:10
Alignment explanation
Indices: 32908802--32908838 Score: 51
Period size: 10 Copynumber: 3.8 Consensus size: 10
32908792 ATTCAAGATG
32908802 TAATTTTTAT
1 TAATTTTTAT
32908812 TAATTTTT-T
1 TAATTTTTAT
32908821 TAATTATTTA-
1 TAATT-TTTAT
32908831 TAATTTTT
1 TAATTTTT
32908839 GAAAGTATAT
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
9 9 0.36
10 16 0.64
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (10 bp):
TAATTTTTAT
Found at i:32908834 original size:19 final size:19
Alignment explanation
Indices: 32908802--32908838 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
32908792 ATTCAAGATG
32908802 TAATTTTTATTAATTTTTT
1 TAATTTTTATTAATTTTTT
32908821 TAATTATTTA-TAATTTTT
1 TAATT-TTTATTAATTTTT
32908839 GAAAGTATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 13 0.76
20 4 0.24
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (19 bp):
TAATTTTTATTAATTTTTT
Found at i:32910005 original size:22 final size:22
Alignment explanation
Indices: 32909964--32910005 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
32909954 CCATAAACAC
* * *
32909964 AAATTACAGAATACAGATGCCA
1 AAATAACAGAATAAACATGCCA
32909986 AAATAACAGAATAAACATGC
1 AAATAACAGAATAAACATGC
32910006 TTAACATGCT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.55, C:0.17, G:0.12, T:0.17
Consensus pattern (22 bp):
AAATAACAGAATAAACATGCCA
Found at i:32910971 original size:21 final size:21
Alignment explanation
Indices: 32910871--32910970 Score: 119
Period size: 21 Copynumber: 4.8 Consensus size: 21
32910861 AAAGCTCGAA
*
32910871 AGCTAAACAGAAGCTCATAAG
1 AGCTGAACAGAAGCTCATAAG
* *
32910892 AGCTGAACAAAAACTCATAAG
1 AGCTGAACAGAAGCTCATAAG
* *
32910913 AGTTGAACAGAAACTCATAAG
1 AGCTGAACAGAAGCTCATAAG
* * *
32910934 AGTTGAACAGAAGCTCGTAGG
1 AGCTGAACAGAAGCTCATAAG
*
32910955 AGCTAAACAGAAGCTC
1 AGCTGAACAGAAGCTC
32910971 GAAAAAACTA
Statistics
Matches: 69, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 69 1.00
ACGTcount: A:0.45, C:0.18, G:0.21, T:0.16
Consensus pattern (21 bp):
AGCTGAACAGAAGCTCATAAG
Found at i:32910981 original size:21 final size:21
Alignment explanation
Indices: 32910939--32910987 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
32910929 ATAAGAGTTG
* ** *
32910939 AACAGAAGCTCGTAGGAGCTA
1 AACAGAAGCTCGAAAAAACTA
32910960 AACAGAAGCTCGAAAAAACTA
1 AACAGAAGCTCGAAAAAACTA
32910981 AACAGAA
1 AACAGAA
32910988 AGTAAAACAC
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.51, C:0.18, G:0.20, T:0.10
Consensus pattern (21 bp):
AACAGAAGCTCGAAAAAACTA
Found at i:32915090 original size:3 final size:3
Alignment explanation
Indices: 32915082--32915286 Score: 61
Period size: 3 Copynumber: 67.3 Consensus size: 3
32915072 AACCTTCACA
* * * *
32915082 TAT TAT TAT TAT TGT TAT TAT TAT TAT TTT TAC TAT CTAA TA- TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT TAT TAT
* * * * * *
32915127 TAT TA- TACT TAT TTT TACC CA- TGT TA- TATT TAT TAT TAA TAT TAG
1 TAT TAT TA-T TAT TAT TA-T TAT TAT TAT TA-T TAT TAT TAT TAT TAT
* * *
32915172 TAT ATAT ATACT T-T TA- TAT ATAG TAT TAT TTT TAT ATAT CAT TA-
1 TAT -TAT -TA-T TAT TAT TAT -TAT TAT TAT TAT TAT -TAT TAT TAT
** * *
32915216 TATT TAT TAT TAT GCT TAT TAT T-T TCAC TAT TGT TACT TAT TAT T-T
1 TA-T TAT TAT TAT TAT TAT TAT TAT T-AT TAT TAT TA-T TAT TAT TAT
*
32915262 TAT T-T TAA TAT TAT TAT GTAT TAT T
1 TAT TAT TAT TAT TAT TAT -TAT TAT T
32915287 TGGTATACAT
Statistics
Matches: 146, Mismatches: 34, Indels: 44
0.65 0.15 0.20
Matches are distributed among these distances:
2 18 0.12
3 99 0.68
4 28 0.19
5 1 0.01
ACGTcount: A:0.31, C:0.06, G:0.03, T:0.60
Consensus pattern (3 bp):
TAT
Found at i:32915160 original size:30 final size:29
Alignment explanation
Indices: 32915096--32915162 Score: 73
Period size: 30 Copynumber: 2.2 Consensus size: 29
32915086 ATTATTATTG
*
32915096 TTATTATTATTATTTTTACTATCTAATATA
1 TTATTA-TATTATTTTTACCATCTAATATA
* *
32915126 TTATTATACTTATTTTTACCCATGTTATAT-
1 TTATTATA-TTATTTTTA-CCATCTAATATA
32915156 TTATTAT
1 TTATTAT
32915163 TAATATTAGT
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
29 2 0.06
30 22 0.69
31 8 0.25
ACGTcount: A:0.30, C:0.09, G:0.01, T:0.60
Consensus pattern (29 bp):
TTATTATATTATTTTTACCATCTAATATA
Found at i:32915837 original size:18 final size:18
Alignment explanation
Indices: 32915816--32915870 Score: 78
Period size: 17 Copynumber: 3.2 Consensus size: 18
32915806 ATTCGGATCC
32915816 CAAAAATTTTCGTGTTTT
1 CAAAAATTTTCGTGTTTT
32915834 C-AAAATTTTCGTGTTTT
1 CAAAAATTTTCGTGTTTT
* *
32915851 AAAAAATTCTCGT-TTTT
1 CAAAAATTTTCGTGTTTT
32915868 CAA
1 CAA
32915871 TCGGATTACG
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
17 22 0.67
18 11 0.33
ACGTcount: A:0.31, C:0.13, G:0.09, T:0.47
Consensus pattern (18 bp):
CAAAAATTTTCGTGTTTT
Found at i:32934122 original size:76 final size:73
Alignment explanation
Indices: 32934010--32934355 Score: 473
Period size: 76 Copynumber: 4.7 Consensus size: 73
32934000 TTGATGTTTT
* *
32934010 ATTTCT-GTTTTCAAAAATCAACTCATATTGCGAGAGGTAAGTTGAGCCTCAGGGCACGCTGAGG
1 ATTTCTGGTTTTAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGG
32934074 TATTTTCA
66 TATTTTCA
* *
32934082 ATTTCTGGTTTTAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTAAGGGCACGTTG
1 ATTTCTGGTTTT---AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTG
32934147 AGGTATTTTCA
63 AGGTATTTTCA
* * * * **
32934158 ATTTCTAGTTTTCAAAAAAATCAACTTATATTGTGAGAGGTGAGTTGGGCCTCAGAACACGCTGA
1 ATTTCTGGTTTT--AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGA
*
32934223 GGTAATTTCA
64 GGTATTTTCA
*
32934233 ATTTCT-GTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAG
1 ATTTCTGGTTT-TAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAG
32934297 GTATTTTCA
65 GTATTTTCA
* * * *
32934306 A-TTATGCTTTTCAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTC
1 ATTTCTGGTTTTAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC
32934356 GGGTTACATG
Statistics
Matches: 244, Mismatches: 24, Indels: 12
0.87 0.09 0.04
Matches are distributed among these distances:
72 48 0.20
73 63 0.26
74 4 0.02
75 61 0.25
76 68 0.28
ACGTcount: A:0.30, C:0.16, G:0.22, T:0.32
Consensus pattern (73 bp):
ATTTCTGGTTTTAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGG
TATTTTCA
Found at i:32934304 original size:148 final size:146
Alignment explanation
Indices: 32934010--32934355 Score: 500
Period size: 148 Copynumber: 2.3 Consensus size: 146
32934000 TTGATGTTTT
* **
32934010 ATTTCTGTTTTCAAAAATCAACTCATATTGCGAGAGGTAAGTTGAGCCTCAGGGCACGCTGAGGT
1 ATTTCTGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGAACACGCTGAGGT
*
32934075 ATTTTCAATTTCTGGTTTTAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTAAGGG
66 AATTTCAATTTCTGGTTTT--AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTAAGGG
*
32934140 CACGTTGAGGTATTTTCA
129 CACGCTGAGGTATTTTCA
* * *
32934158 ATTTCTAGTTTTCAAAAAAATCAACTTATATTGTGAGAGGTGAGTTGGGCCTCAGAACACGCTGA
1 ATTTCT-GTTTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGAACACGCTGA
* *
32934223 GGTAATTTCAATTTCT-GTTTGT-CAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG
63 GGTAATTTCAATTTCTGGTTT-TAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTAAG
32934286 GGCACGCTGAGGTATTTTCA
127 GGCACGCTGAGGTATTTTCA
* *
32934306 A-TTATGCTTTTCAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTC
1 ATTTCTG-TTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC
32934356 GGGTTACATG
Statistics
Matches: 178, Mismatches: 15, Indels: 13
0.86 0.07 0.06
Matches are distributed among these distances:
145 34 0.19
146 1 0.01
147 8 0.04
148 65 0.37
149 6 0.03
150 4 0.02
151 60 0.34
ACGTcount: A:0.30, C:0.16, G:0.22, T:0.32
Consensus pattern (146 bp):
ATTTCTGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGAACACGCTGAGGT
AATTTCAATTTCTGGTTTTAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTAAGGGCA
CGCTGAGGTATTTTCA
Found at i:32936281 original size:12 final size:11
Alignment explanation
Indices: 32936261--32936303 Score: 50
Period size: 12 Copynumber: 3.7 Consensus size: 11
32936251 TTAGCTTTGC
32936261 ATTATTATTACT
1 ATTA-TATTACT
32936273 ATTACTATTACT
1 ATTA-TATTACT
*
32936285 ATTATATTTCT
1 ATTATATTACT
*
32936296 TTTATATT
1 ATTATATT
32936304 TATTTATCTA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
11 13 0.46
12 15 0.54
ACGTcount: A:0.30, C:0.09, G:0.00, T:0.60
Consensus pattern (11 bp):
ATTATATTACT
Found at i:32936433 original size:3 final size:3
Alignment explanation
Indices: 32936425--32936650 Score: 60
Period size: 3 Copynumber: 73.3 Consensus size: 3
32936415 AACCTTCACA
* * * *
32936425 TAT TAT TAT TAT TAT TGT TAT TAT TAT TAT TTT TAC TAT CTAA TA-
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT TAT
* * *
32936470 TAT TAT TA- TACT TAT TTT TACCT CTGT TA- TATT TAT TAT TAA TAT
1 TAT TAT TAT TA-T TAT TAT TA--T -TAT TAT TA-T TAT TAT TAT TAT
* * * *
32936515 TAG TAT ATAT T-T TAT T-G TACG TAT ATAT ATACT T-T TA- TAT ATAG
1 TAT TAT -TAT TAT TAT TAT TA-T TAT -TAT -TA-T TAT TAT TAT -TAT
* * **
32936559 TAT TAT TTT TAT ATAT CAT TA- TATT TAT TAT TAT GCT TAT TAT T-T
1 TAT TAT TAT TAT -TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT TAT
* * *
32936604 TCAC TAT TGT TACT TAT TAT T-T TAT T-T TAG TAT TAT TAT GTAT TAT
1 T-AT TAT TAT TA-T TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT TAT
32936650 T
1 T
32936651 TGGTATACAT
Statistics
Matches: 163, Mismatches: 33, Indels: 54
0.65 0.13 0.22
Matches are distributed among these distances:
2 21 0.13
3 105 0.64
4 34 0.21
5 2 0.01
6 1 0.01
ACGTcount: A:0.30, C:0.06, G:0.04, T:0.60
Consensus pattern (3 bp):
TAT
Found at i:32937169 original size:18 final size:18
Alignment explanation
Indices: 32937135--32937168 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
32937125 TGCTGTAAAC
32937135 TTTTCGCGTTTCTAAAAT
1 TTTTCGCGTTTCTAAAAT
*
32937153 TTTTCGTGTTT-TAAAA
1 TTTTCGCGTTTCTAAAA
32937169 AAAAAATTCG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.24, C:0.12, G:0.12, T:0.53
Consensus pattern (18 bp):
TTTTCGCGTTTCTAAAAT
Found at i:32937206 original size:17 final size:17
Alignment explanation
Indices: 32937186--32937255 Score: 106
Period size: 17 Copynumber: 4.1 Consensus size: 17
32937176 TCGGATCCCA
32937186 AAAATTTTCGTGTTTTC
1 AAAATTTTCGTGTTTTC
32937203 AAAATTTTCGTGTTTTC
1 AAAATTTTCGTGTTTTC
*
32937220 AAAATTTTCGTGTTTTAA
1 AAAATTTTCGTGTTTT-C
*
32937238 AAAATTCTCGT-TTTTC
1 AAAATTTTCGTGTTTTC
32937254 AA
1 AA
32937256 TCGGATTACG
Statistics
Matches: 49, Mismatches: 3, Indels: 3
0.89 0.05 0.05
Matches are distributed among these distances:
16 2 0.04
17 37 0.76
18 10 0.20
ACGTcount: A:0.29, C:0.11, G:0.10, T:0.50
Consensus pattern (17 bp):
AAAATTTTCGTGTTTTC
Found at i:32939109 original size:15 final size:15
Alignment explanation
Indices: 32939089--32939118 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
32939079 GTTTAGCATG
32939089 GGATAATCTTGTTGT
1 GGATAATCTTGTTGT
32939104 GGATAATCTTGTTGT
1 GGATAATCTTGTTGT
32939119 TTAATGTATG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.20, C:0.07, G:0.27, T:0.47
Consensus pattern (15 bp):
GGATAATCTTGTTGT
Found at i:32953671 original size:22 final size:22
Alignment explanation
Indices: 32953646--32953691 Score: 65
Period size: 22 Copynumber: 2.1 Consensus size: 22
32953636 TTAAGGTGGA
* *
32953646 TTAGGGTTTTTATGGTTTAGGG
1 TTAGAGTTTTTAGGGTTTAGGG
*
32953668 TTAGATTTTTTAGGGTTTAGGG
1 TTAGAGTTTTTAGGGTTTAGGG
32953690 TT
1 TT
32953692 TTTGTAAGGG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.15, C:0.00, G:0.33, T:0.52
Consensus pattern (22 bp):
TTAGAGTTTTTAGGGTTTAGGG
Done.