Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100714657
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 3970000 characters in sequence are not A, C, G, or T
File 101 of 318
Found at i:32954045 original size:126 final size:125
Alignment explanation
Indices: 32953900--32954252 Score: 465
Period size: 126 Copynumber: 2.8 Consensus size: 125
32953890 TCTGGATAAA
* * *
32953900 AAGAAGTTTCTGAAGAAATAGTATCCAAAACGCTTCAAGCAGGATGCACTGTCAGCAAAATTACT
1 AAGAAGTTTCTGAAAAAATAGTGTCAAAAACGCTTCAAGCAGGATGCACTGTCAGCAAAATTACT
* * *
32953965 GAAAAATGCTTCCACGTGGACGCTTTTTTTCTACAGTGGTATCTGAGAAAATAAATT-TGAG
66 GAAAAA-GCTCCCACGTGGACGCTCTTTTTCTACAGTGGTATCTGAAAAAAT-AATTGTGAG
* * * *
32954026 AAGAGGTTTCTGAAAAAATAGTGTAAAAAACGCTTTAAGCAGGATGCACTGTCAGCAAAAATACT
1 AAGAAGTTTCTGAAAAAATAGTGTCAAAAACGCTTCAAGCAGGATGCACTGTCAGCAAAATTACT
**
32954091 GAAAAAAGCTCCCACGTGGACGCTCTTTTGATACAGTGGTATCTGAAAAAATAATTGTGAG
66 G-AAAAAGCTCCCACGTGGACGCTCTTTTTCTACAGTGGTATCTGAAAAAATAATTGTGAG
* ** * * * * *
32954152 ATGACCTTTCTGAACAAATAGTGTCAAAAATGCTTCATGCAGTATGCACTTTCAGCAAAATTACT
1 AAGAAGTTTCTGAAAAAATAGTGTCAAAAACGCTTCAAGCAGGATGCACTGTCAGCAAAATTACT
32954217 GAGAAAAGCTCCCACGTGGACACGCTCTTTTTCTAC
66 GA-AAAAGCTCCCACGTGG--ACGCTCTTTTTCTAC
32954253 TGTAGTTCCT
Statistics
Matches: 197, Mismatches: 25, Indels: 8
0.86 0.11 0.03
Matches are distributed among these distances:
125 5 0.03
126 174 0.88
127 5 0.03
128 13 0.07
ACGTcount: A:0.36, C:0.18, G:0.19, T:0.27
Consensus pattern (125 bp):
AAGAAGTTTCTGAAAAAATAGTGTCAAAAACGCTTCAAGCAGGATGCACTGTCAGCAAAATTACT
GAAAAAGCTCCCACGTGGACGCTCTTTTTCTACAGTGGTATCTGAAAAAATAATTGTGAG
Found at i:32955477 original size:42 final size:42
Alignment explanation
Indices: 32955430--32955515 Score: 172
Period size: 42 Copynumber: 2.0 Consensus size: 42
32955420 ATTAAAATAC
32955430 TAAAAACAACTTTTATTTTATTACAAATATAAAAGAGTAAAT
1 TAAAAACAACTTTTATTTTATTACAAATATAAAAGAGTAAAT
32955472 TAAAAACAACTTTTATTTTATTACAAATATAAAAGAGTAAAT
1 TAAAAACAACTTTTATTTTATTACAAATATAAAAGAGTAAAT
32955514 TA
1 TA
32955516 TAATTAAAAT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 44 1.00
ACGTcount: A:0.52, C:0.07, G:0.05, T:0.36
Consensus pattern (42 bp):
TAAAAACAACTTTTATTTTATTACAAATATAAAAGAGTAAAT
Found at i:32955968 original size:18 final size:18
Alignment explanation
Indices: 32955947--32955982 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
32955937 AAAAGGAAAC
*
32955947 ATATAAGGGTTAGGATAT
1 ATATAAGGGCTAGGATAT
32955965 ATATAAGGGCTAGGATAT
1 ATATAAGGGCTAGGATAT
32955983 GCACCTGGCA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.39, C:0.03, G:0.28, T:0.31
Consensus pattern (18 bp):
ATATAAGGGCTAGGATAT
Found at i:32956610 original size:7 final size:7
Alignment explanation
Indices: 32956600--32956651 Score: 86
Period size: 7 Copynumber: 7.4 Consensus size: 7
32956590 TTGTATACAT
32956600 AATACTA
1 AATACTA
32956607 AATACTA
1 AATACTA
32956614 AATACTA
1 AATACTA
32956621 AATACTA
1 AATACTA
*
32956628 AATATTA
1 AATACTA
32956635 AATACTA
1 AATACTA
*
32956642 AATACGA
1 AATACTA
32956649 AAT
1 AAT
32956652 GAGTATTTTA
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
7 42 1.00
ACGTcount: A:0.58, C:0.12, G:0.02, T:0.29
Consensus pattern (7 bp):
AATACTA
Found at i:32956831 original size:20 final size:19
Alignment explanation
Indices: 32956787--32956831 Score: 54
Period size: 20 Copynumber: 2.3 Consensus size: 19
32956777 CTAATTAAAT
*
32956787 AAATTTTAAAATCTATGTA
1 AAATTGTAAAATCTATGTA
*
32956806 ATAATTGTAAAATCTAATTTA
1 A-AATTGTAAAATCT-ATGTA
32956827 AAATT
1 AAATT
32956832 TACCTCGTTA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
19 1 0.05
20 16 0.73
21 5 0.23
ACGTcount: A:0.49, C:0.04, G:0.04, T:0.42
Consensus pattern (19 bp):
AAATTGTAAAATCTATGTA
Found at i:32957846 original size:22 final size:22
Alignment explanation
Indices: 32957821--32957865 Score: 74
Period size: 22 Copynumber: 2.0 Consensus size: 22
32957811 CAAAGAGAGC
32957821 TTTGTGAA-AATTTGAGAGAATT
1 TTTG-GAAGAATTTGAGAGAATT
32957843 TTTGGAAGAATTTGAGAGAATT
1 TTTGGAAGAATTTGAGAGAATT
32957865 T
1 T
32957866 GGATAGGAGG
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
21 3 0.14
22 19 0.86
ACGTcount: A:0.36, C:0.00, G:0.24, T:0.40
Consensus pattern (22 bp):
TTTGGAAGAATTTGAGAGAATT
Found at i:32961390 original size:25 final size:24
Alignment explanation
Indices: 32961362--32961510 Score: 91
Period size: 25 Copynumber: 5.9 Consensus size: 24
32961352 TTTCTCATAC
32961362 ATTATTTATTTTAAATTGTTTTATT
1 ATTATTTATTTTAAATT-TTTTATT
* * * *
32961387 ATTATTTACTTTAAGTTTTTCACAT
1 ATTATTTATTTTAAATTTTTTA-TT
** ** *
32961412 ATTATGCATTTTAAACTATTTCAAACT
1 ATTATTTATTTTAAA-T-TTT-TTATT
** *
32961439 ATTATCCATTTTAAAATTTTTATAT
1 ATTATTTATTTTAAATTTTTTAT-T
* *
32961464 ATTATTTATTTTAAACTGTTATATGT
1 ATTATTTATTTTAAA-TTTTTTAT-T
*
32961490 ATTATTTATTTTGAATTTTTT
1 ATTATTTATTTTAAATTTTTT
32961511 TATTTTTTTA
Statistics
Matches: 93, Mismatches: 25, Indels: 12
0.72 0.19 0.09
Matches are distributed among these distances:
24 5 0.05
25 48 0.52
26 21 0.23
27 18 0.19
28 1 0.01
ACGTcount: A:0.31, C:0.07, G:0.04, T:0.58
Consensus pattern (24 bp):
ATTATTTATTTTAAATTTTTTATT
Found at i:32961496 original size:26 final size:25
Alignment explanation
Indices: 32961446--32961501 Score: 76
Period size: 26 Copynumber: 2.2 Consensus size: 25
32961436 ACTATTATCC
*
32961446 ATTTTAAAATTTTTATATATTATTT
1 ATTTTAAAATTTATATATATTATTT
* *
32961471 ATTTTAAACTGTTATATGTATTATTT
1 ATTTTAAAAT-TTATATATATTATTT
32961497 ATTTT
1 ATTTT
32961502 GAATTTTTTT
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
25 9 0.33
26 18 0.67
ACGTcount: A:0.32, C:0.02, G:0.04, T:0.62
Consensus pattern (25 bp):
ATTTTAAAATTTATATATATTATTT
Found at i:32961511 original size:52 final size:49
Alignment explanation
Indices: 32961333--32961513 Score: 128
Period size: 52 Copynumber: 3.4 Consensus size: 49
32961323 TGTTATTTAT
* *
32961333 TTATTTATTTTAAACCTTTTTTCTCATACATTATTTATTTTAAATTGTTTTATTA
1 TTATTTATTTT-AA--TTTTTT-T-ATATATTATTTATTTTAAACTG-TTTATTA
* * * * ** * *
32961388 TTATTTACTTTAAGTTTTTCACATATTATGCATTTTAAACTATTTCAAACTA
1 TTATTTATTTTAATTTTTTTATATATTATTTATTTTAAACTGTTT---ATTA
** **
32961440 TTATCCATTTTAAAATTTTTATATATTATTTATTTTAAACTGTTATATGTA
1 TTATTTATTTTAATTTTTTTATATATTATTTATTTTAAACTGTT-TAT-TA
32961491 TTATTTATTTTGAATTTTTTTAT
1 TTATTTATTTT-AATTTTTTTAT
32961514 TTTTTTATAT
Statistics
Matches: 95, Mismatches: 25, Indels: 15
0.70 0.19 0.11
Matches are distributed among these distances:
49 3 0.03
50 17 0.18
51 11 0.12
52 51 0.54
53 1 0.01
54 2 0.02
55 10 0.11
ACGTcount: A:0.30, C:0.08, G:0.03, T:0.59
Consensus pattern (49 bp):
TTATTTATTTTAATTTTTTTATATATTATTTATTTTAAACTGTTTATTA
Found at i:32961512 original size:36 final size:37
Alignment explanation
Indices: 32961467--32961537 Score: 90
Period size: 36 Copynumber: 1.9 Consensus size: 37
32961457 TTTATATATT
*
32961467 ATTTATTTTAAACTGTTATATGTATTATTTATTTTGA
1 ATTTATTTTAAACTGTTATATGTATCATTTATTTTGA
*** *
32961504 ATTT-TTTTATTTTTTTATATGTATCATTTATTTT
1 ATTTATTTTAAACTGTTATATGTATCATTTATTTT
32961538 TAAACTGTTT
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
36 25 0.86
37 4 0.14
ACGTcount: A:0.25, C:0.03, G:0.06, T:0.66
Consensus pattern (37 bp):
ATTTATTTTAAACTGTTATATGTATCATTTATTTTGA
Found at i:32961556 original size:63 final size:61
Alignment explanation
Indices: 32961455--32961575 Score: 154
Period size: 63 Copynumber: 2.0 Consensus size: 61
32961445 CATTTTAAAA
* * * *
32961455 TTTTTATATATTATTTATTTTAAACTGTTATATGTATTATTTATTTTGAATTT-TTTTATT
1 TTTTTATATATCATTTATTTTAAACTGTTATATATATTATCTATTTTAAATTTCTTTTATT
* *
32961515 TTTTTATATGTATCATTTATTTTTAAACTGTTTTGTATATTATCTATTTTAAATTTCTTTT
1 TTTTTATA--TATCATTTA-TTTTAAACTGTTATATATATTATCTATTTTAAATTTCTTTT
32961576 TAGGGTCCGT
Statistics
Matches: 51, Mismatches: 6, Indels: 4
0.84 0.10 0.07
Matches are distributed among these distances:
60 8 0.16
62 8 0.16
63 31 0.61
64 4 0.08
ACGTcount: A:0.26, C:0.04, G:0.05, T:0.65
Consensus pattern (61 bp):
TTTTTATATATCATTTATTTTAAACTGTTATATATATTATCTATTTTAAATTTCTTTTATT
Found at i:32962337 original size:19 final size:20
Alignment explanation
Indices: 32962313--32962359 Score: 87
Period size: 19 Copynumber: 2.4 Consensus size: 20
32962303 CATCCAAACA
32962313 CCAGAAAAGTAAATCAT-TT
1 CCAGAAAAGTAAATCATATT
32962332 CCAGAAAAGTAAATCATATT
1 CCAGAAAAGTAAATCATATT
32962352 CCAGAAAA
1 CCAGAAAA
32962360 TATTTTGCTG
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
19 17 0.63
20 10 0.37
ACGTcount: A:0.51, C:0.17, G:0.11, T:0.21
Consensus pattern (20 bp):
CCAGAAAAGTAAATCATATT
Found at i:32962473 original size:27 final size:26
Alignment explanation
Indices: 32962386--32962531 Score: 176
Period size: 27 Copynumber: 5.7 Consensus size: 26
32962376 AAACGGAGCC
*
32962386 TTATATATTATTTATTTTAAA--CTT
1 TTATATATTATTTATTTTAAATTTTT
* *
32962410 TT-TATA-TA-TTATTTTAAATTGTC
1 TTATATATTATTTATTTTAAATTTTT
32962433 TTATATATTATTTATTTTAAATTTTT
1 TTATATATTATTTATTTTAAATTTTT
32962459 TTCATATATTATTTATTTTAAACTTTTT
1 TT-ATATATTATTTATTTTAAA-TTTTT
* *
32962487 ATATATATTATTTACTTTAAATTGTTT
1 TTATATATTATTTATTTTAAATT-TTT
32962514 TTATATATTATTTTATTT
1 TTATATATTA-TTTATTT
32962532 CATTTTTTCT
Statistics
Matches: 105, Mismatches: 8, Indels: 14
0.83 0.06 0.11
Matches are distributed among these distances:
21 10 0.10
22 2 0.02
23 7 0.07
24 6 0.06
25 2 0.02
26 17 0.16
27 49 0.47
28 12 0.11
ACGTcount: A:0.31, C:0.03, G:0.01, T:0.64
Consensus pattern (26 bp):
TTATATATTATTTATTTTAAATTTTT
Found at i:32967717 original size:19 final size:20
Alignment explanation
Indices: 32967693--32967736 Score: 65
Period size: 19 Copynumber: 2.2 Consensus size: 20
32967683 TATTTTGTTA
32967693 AAAAAATAAATAAA-AA-AAG
1 AAAAAATAAA-AAAGAAGAAG
32967712 AAAAAATAAAAAAGAAGAAG
1 AAAAAATAAAAAAGAAGAAG
32967732 AAAAA
1 AAAAA
32967737 GGAGAGGCCA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 3 0.13
19 12 0.52
20 8 0.35
ACGTcount: A:0.84, C:0.00, G:0.09, T:0.07
Consensus pattern (20 bp):
AAAAAATAAAAAAGAAGAAG
Found at i:32968790 original size:89 final size:89
Alignment explanation
Indices: 32968634--32968826 Score: 253
Period size: 89 Copynumber: 2.2 Consensus size: 89
32968624 ATGGTGAATC
* * * * *
32968634 TTATCTCCCTAAAGTTGCAGTAAACTAGACTGAAGATAGCGAATCTTATCTATCTAAAGTTGTAG
1 TTATCTCCCTGAAGTTGCAGTAAACTAGACTGAAGATAACCAATCTTATCTATATAAAGTTGCAG
*
32968699 TAGAGAAGATTAAAGCTATAAACT
66 TAGAGAAGATTAAAGCCATAAACT
* * * * *
32968723 TTATCTCCCTGAATTTGCAGTGGAGC-AGACTGAAGATAACCAATCTTATCTCTATAGAGTTGCA
1 TTATCTCCCTGAAGTTGCAGT-AAACTAGACTGAAGATAACCAATCTTATCTATATAAAGTTGCA
*
32968787 GTAGAGTAGATTAAAGCCATAAACT
65 GTAGAGAAGATTAAAGCCATAAACT
*
32968812 TTATCCCCCTGAAGT
1 TTATCTCCCTGAAGT
32968827 AACAGTGGGG
Statistics
Matches: 89, Mismatches: 14, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
89 87 0.98
90 2 0.02
ACGTcount: A:0.35, C:0.18, G:0.18, T:0.30
Consensus pattern (89 bp):
TTATCTCCCTGAAGTTGCAGTAAACTAGACTGAAGATAACCAATCTTATCTATATAAAGTTGCAG
TAGAGAAGATTAAAGCCATAAACT
Found at i:32968879 original size:133 final size:133
Alignment explanation
Indices: 32968723--32968975 Score: 364
Period size: 133 Copynumber: 1.9 Consensus size: 133
32968713 GCTATAAACT
* * *
32968723 TTATCTCCCTGAATTTGCAGTGGAGCAGACTGAAGATAACCAATCTTATCTCTAT-AGAGTTGCA
1 TTATCTCCCTGAAGTTACAGTGGAGCAGACTGAAGATAACCAATCTTATCTCGATGA-AGTTGCA
* * *
32968787 GTAGAGTAGATTAAAGCCATAAACTTTATCCCCCTGAAGTAACAGTGGGGCAGGTTTAAGTTACG
65 GTAGAGTAGATTAAAGCCATAAACCTTATCCCCCTGAAGTAACAGTAGAGCAGGTTTAAGTTACG
32968852 AGTC
130 AGTC
* * * *
32968856 TTATCTCCCTGAAGTTATAGTGGAGCAGACTGAAGATAGCTAATCTTATCTCGCTGAAGTTGCAG
1 TTATCTCCCTGAAGTTACAGTGGAGCAGACTGAAGATAACCAATCTTATCTCGATGAAGTTGCAG
* * * *
32968921 TATAGTAGATTAAAGCTATAAACCTTATCTCCCTGAAGTTACAGTAGAGCAGGTT
66 TAGAGTAGATTAAAGCCATAAACCTTATCCCCCTGAAGTAACAGTAGAGCAGGTT
32968976 AAAAATAACA
Statistics
Matches: 105, Mismatches: 14, Indels: 2
0.87 0.12 0.02
Matches are distributed among these distances:
133 104 0.99
134 1 0.01
ACGTcount: A:0.31, C:0.18, G:0.21, T:0.30
Consensus pattern (133 bp):
TTATCTCCCTGAAGTTACAGTGGAGCAGACTGAAGATAACCAATCTTATCTCGATGAAGTTGCAG
TAGAGTAGATTAAAGCCATAAACCTTATCCCCCTGAAGTAACAGTAGAGCAGGTTTAAGTTACGA
GTC
Found at i:32968971 original size:89 final size:89
Alignment explanation
Indices: 32968855--32969031 Score: 221
Period size: 89 Copynumber: 2.0 Consensus size: 89
32968845 AGTTACGAGT
* * * * * * *
32968855 CTTATCTCCCTGAAGTTATAGTGGAGCAGACTGAAGATAGCTAATCTTATCTCGCTGAA-GTTGC
1 CTTATCTCCCTGAAGTTACAGTAGAGCAGACTAAAAATAACAAATCTTATCTCACT-AAGGTTGC
*
32968919 AGTATAGTAGATTAAAGCTATAAAC
65 AGTAGAGTAGATTAAAGCTATAAAC
**
32968944 CTTATCTCCCTGAAGTTACAGTAGAGCAGGTTAAAAATAACAAATCTTATCTCACTAAGGTTGCA
1 CTTATCTCCCTGAAGTTACAGTAGAGCAGACTAAAAATAACAAATCTTATCTCACTAAGGTTGCA
* * *
32969009 GTGGAGTAGATTGAAGTTATAAA
66 GTAGAGTAGATTAAAGCTATAAA
32969032 TCCCATACCT
Statistics
Matches: 74, Mismatches: 13, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
88 2 0.03
89 72 0.97
ACGTcount: A:0.34, C:0.16, G:0.20, T:0.30
Consensus pattern (89 bp):
CTTATCTCCCTGAAGTTACAGTAGAGCAGACTAAAAATAACAAATCTTATCTCACTAAGGTTGCA
GTAGAGTAGATTAAAGCTATAAAC
Found at i:32968978 original size:44 final size:44
Alignment explanation
Indices: 32968697--32968978 Score: 165
Period size: 44 Copynumber: 6.4 Consensus size: 44
32968687 CTAAAGTTGT
* * * *
32968697 AGTAGAGAAGATTAAAGCTATAAACTTTATCTCCCTGAATTTGC
1 AGTAGAGCAGATTAAAGCTATAAACCTTATCTCCCTGAAGTTAC
* * * * * ** *
32968741 AGTGGAGCAGACTGAAGATA-ACCAATCTTATCTCTAT-AGAGTTGC
1 AGTAGAGCAGATTAAAGCTATA--AACCTTATCTCCCTGA-AGTTAC
* * * * *
32968786 AGTAGAGTAGATTAAAGCCATAAACTTTATCCCCCTGAAGTAAC
1 AGTAGAGCAGATTAAAGCTATAAACCTTATCTCCCTGAAGTTAC
* * * * * ** ** *
32968830 AGTGGGGCAGGTTTAAGTTACGAGTCTTATCTCCCTGAAGTTAT
1 AGTAGAGCAGATTAAAGCTATAAACCTTATCTCCCTGAAGTTAC
* * * * * * *
32968874 AGTGGAGCAGACTGAAGATAGCT-AATCTTATCTCGCTGAAGTTGC
1 AGTAGAGCAGATTAAAGCTA--TAAACCTTATCTCCCTGAAGTTAC
* *
32968919 AGTATAGTAGATTAAAGCTATAAACCTTATCTCCCTGAAGTTAC
1 AGTAGAGCAGATTAAAGCTATAAACCTTATCTCCCTGAAGTTAC
*
32968963 AGTAGAGCAGGTTAAA
1 AGTAGAGCAGATTAAA
32968979 AATAACAAAT
Statistics
Matches: 170, Mismatches: 60, Indels: 16
0.69 0.24 0.07
Matches are distributed among these distances:
43 2 0.01
44 105 0.62
45 62 0.36
46 1 0.01
ACGTcount: A:0.33, C:0.17, G:0.21, T:0.29
Consensus pattern (44 bp):
AGTAGAGCAGATTAAAGCTATAAACCTTATCTCCCTGAAGTTAC
Found at i:32969046 original size:133 final size:132
Alignment explanation
Indices: 32968723--32969054 Score: 303
Period size: 133 Copynumber: 2.5 Consensus size: 132
32968713 GCTATAAACT
* * * * ** **
32968723 TTATCTCCCTGAATTTGCAGTGGAGCAGACTGAAGATAACCAATCTTATCTCTAT-AGAGTTGCA
1 TTATCTCACTGAAGTTACAGTGGAGCAGACTGAAGAT-ACTAATCCCATCTCGCTGA-AGTTGCA
* * * * * * *
32968787 GTAGAGTAGATTAAAGCCATAAACTTTATCCCCCTGAAGTAACAGTGGGGCAGGTTTAAGTTACG
64 GTAGAGTAGATTAAAGCCATAAACCTTATCCCCCTGAAGTAACAGTAGAGCAGGTTAAAATAACA
*
32968852 AGTC
129 AATC
* * **
32968856 TTATCTCCCTGAAGTTATAGTGGAGCAGACTGAAGATAGCTAATCTTATCTCGCTGAAGTTGCAG
1 TTATCTCACTGAAGTTACAGTGGAGCAGACTGAAGATA-CTAATCCCATCTCGCTGAAGTTGCAG
* * * *
32968921 TATAGTAGATTAAAGCTATAAACCTTATCTCCCTGAAGTTACAGTAGAGCAGGTTAAAAATAACA
65 TAGAGTAGATTAAAGCCATAAACCTTATCCCCCTGAAGTAACAGTAGAGCAGGTT-AAAATAACA
32968986 AATC
129 AATC
* * * * * *
32968990 TTATCTCACT-AAGGTTGCAGTGGAGTAGATTGAAGTTA-TAAATCCCATAC-CTCTGAAATTGC
1 TTATCTCACTGAA-GTTACAGTGGAGCAGACTGAAGATACT-AATCCCAT-CTCGCTGAAGTTGC
32969052 AGT
63 AGT
32969055 GGGATGGATT
Statistics
Matches: 165, Mismatches: 28, Indels: 12
0.80 0.14 0.06
Matches are distributed among these distances:
132 2 0.01
133 124 0.75
134 39 0.24
ACGTcount: A:0.33, C:0.18, G:0.20, T:0.30
Consensus pattern (132 bp):
TTATCTCACTGAAGTTACAGTGGAGCAGACTGAAGATACTAATCCCATCTCGCTGAAGTTGCAGT
AGAGTAGATTAAAGCCATAAACCTTATCCCCCTGAAGTAACAGTAGAGCAGGTTAAAATAACAAA
TC
Found at i:32969188 original size:45 final size:45
Alignment explanation
Indices: 32969124--32969303 Score: 198
Period size: 45 Copynumber: 3.9 Consensus size: 45
32969114 TGAGGCCACA
* * * **
32969124 AATCTTATGTCCCTAAAGTTGCAGTAGAGCAGATTAAAGATAACG
1 AATCTTATTTCCCTGAAGTTGCAGTGGAATAGATTAAAGATAACG
* * *
32969169 AATCTTATTTTCCTGAAGTTGCAGTGGAATAGATTAAAGCTACAAGTCACA
1 AATCTTATTTCCCTGAAGTTGCAGTGGAATAGATTAAAG-----A-TAACG
* * * *
32969220 AATCTTGTCTCCCTGAAGTTGCAGTGGAGTAGATTCAAGATAACG
1 AATCTTATTTCCCTGAAGTTGCAGTGGAATAGATTAAAGATAACG
32969265 AATCTTATTTCCCTGAAGTTGCAGTGGAATAGATTAAAG
1 AATCTTATTTCCCTGAAGTTGCAGTGGAATAGATTAAAG
32969304 CTACAAGTTA
Statistics
Matches: 110, Mismatches: 19, Indels: 12
0.78 0.13 0.09
Matches are distributed among these distances:
45 71 0.65
46 1 0.01
50 1 0.01
51 37 0.34
ACGTcount: A:0.34, C:0.16, G:0.21, T:0.30
Consensus pattern (45 bp):
AATCTTATTTCCCTGAAGTTGCAGTGGAATAGATTAAAGATAACG
Found at i:32969245 original size:51 final size:51
Alignment explanation
Indices: 32969164--32969336 Score: 180
Period size: 51 Copynumber: 3.5 Consensus size: 51
32969154 AGATTAAAGA
* * *
32969164 TAACGAATCTTATTTTCCTGAAGTTGCAGTGGAATAGATTAAAGCTACAAG
1 TAACAAATCTTATCTCCCTGAAGTTGCAGTGGAATAGATTAAAGCTACAAG
* * * *
32969215 TCACAAATCTTGTCTCCCTGAAGTTGCAGTGGAGTAGATTCAAG-----A-
1 TAACAAATCTTATCTCCCTGAAGTTGCAGTGGAATAGATTAAAGCTACAAG
* *
32969260 TAACGAATCTTATTTCCCTGAAGTTGCAGTGGAATAGATTAAAGCTACAAG
1 TAACAAATCTTATCTCCCTGAAGTTGCAGTGGAATAGATTAAAGCTACAAG
* * *
32969311 TTACAAATCCTATAC-CTCTGAAGTTG
1 TAACAAATCTTAT-CTCCCTGAAGTTG
32969337 TAGTAGGTCG
Statistics
Matches: 97, Mismatches: 18, Indels: 14
0.75 0.14 0.11
Matches are distributed among these distances:
45 38 0.39
46 1 0.01
50 1 0.01
51 57 0.59
ACGTcount: A:0.33, C:0.17, G:0.19, T:0.31
Consensus pattern (51 bp):
TAACAAATCTTATCTCCCTGAAGTTGCAGTGGAATAGATTAAAGCTACAAG
Found at i:32969254 original size:96 final size:96
Alignment explanation
Indices: 32969120--32969585 Score: 385
Period size: 96 Copynumber: 4.9 Consensus size: 96
32969110 AGATTGAGGC
* *
32969120 CACAAATCTTATGTCCCTAAAGTTGCAGTAGAGCAGATTAAAGATAACGAATCTTATTTTCCTGA
1 CACAAATCTTATCTCCCTAAAGTTGCAGTAGAGCAGATTAAAGATAACGAATCTTATTTCCCTGA
32969185 AGTTGCAGTGGAATAGATTAAAGCTACAAGT
66 AGTTGCAGTGGAATAGATTAAAGCTACAAGT
* * * * *
32969216 CACAAATCTTGTCTCCCTGAAGTTGCAGTGGAGTAGATTCAAGATAACGAATCTTATTTCCCTGA
1 CACAAATCTTATCTCCCTAAAGTTGCAGTAGAGCAGATTAAAGATAACGAATCTTATTTCCCTGA
32969281 AGTTGCAGTGGAATAGATTAAAGCTACAAGT
66 AGTTGCAGTGGAATAGATTAAAGCTACAAGT
* * * * * * ** ** *
32969312 TACAAATCCTATAC-CTCTGAAGTTGTAGTAG-GTCGGACCAAATTTACCATGGCGAATCTTATC
1 CACAAATCTTAT-CTCCCTAAAGTTGCAGTAGAG-CAGATTAAAGATA--A---CGAATCTTATT
*
32969375 TCCCTGAAGTTGCAGTGGAGTAGATT---G----AAGT
59 TCCCTGAAGTTGCAGTGGAATAGATTAAAGCTACAAGT
* * * * * * * * ** * *
32969406 CACAAGTCTTATTTTCCTAAAGTTGCAGTGGAGCAAACTGAAGTTGGCAAATCTTATTTCCCTAA
1 CACAAATCTTATCTCCCTAAAGTTGCAGTAGAGCAGATTAAAGATAACGAATCTTATTTCCCTGA
* * *
32969471 AGTTACAATGGAACAAGATTAAAGCTACAAG-
66 AGTTGCAGTGGAA-TAGATTAAAGCTACAAGT
* ** * * * * **
32969502 CTACTAATCTTATCTCCCTAAAGTTGCAGTAGAGTTGATTGAAGATCACAAATCTTATGTCGTTG
1 C-ACAAATCTTATCTCCCTAAAGTTGCAGTAGAGCAGATTAAAGATAACGAATCTTATTTCCCTG
*
32969567 AAGTTGCAGTGGAACAGAT
65 AAGTTGCAGTGGAATAGAT
32969586 CCAAGCCACA
Statistics
Matches: 288, Mismatches: 64, Indels: 36
0.74 0.16 0.09
Matches are distributed among these distances:
89 25 0.09
90 5 0.02
93 1 0.00
94 32 0.11
95 2 0.01
96 123 0.43
97 63 0.22
98 2 0.01
101 35 0.12
ACGTcount: A:0.33, C:0.17, G:0.20, T:0.30
Consensus pattern (96 bp):
CACAAATCTTATCTCCCTAAAGTTGCAGTAGAGCAGATTAAAGATAACGAATCTTATTTCCCTGA
AGTTGCAGTGGAATAGATTAAAGCTACAAGT
Found at i:32969431 original size:44 final size:45
Alignment explanation
Indices: 32969366--32969643 Score: 141
Period size: 44 Copynumber: 6.1 Consensus size: 45
32969356 TACCATGGCG
* * * * *
32969366 AATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTGAAG-TCACA
1 AATCTTATTTCCCTAAAGTTGCAGTGGAGCAAACTGAAGTTCACA
* * **
32969410 AGTCTTATTTTCCTAAAGTTGCAGTGGAGCAAACTGAAGTTGGCA
1 AATCTTATTTCCCTAAAGTTGCAGTGGAGCAAACTGAAGTTCACA
* * * * * *
32969455 AATCTTATTTCCCTAAAGTTACAATGGAACAAGATTAAAGCTACAAGCTA
1 AATCTTATTTCCCTAAAGTTGCAGTGGAGCAA-ACTGAAG-TTC-A-C-A
* * *** * *
32969505 CTAATCTTATCTCCCTAAAGTTGCAGTAGAGTTGATTGAAGATCACA
1 --AATCTTATTTCCCTAAAGTTGCAGTGGAGCAAACTGAAGTTCACA
* ** * * * * *
32969552 AATCTTATGTCGTTGAAGTTGCAGTGGAACAGA-TCCAAG-CCACA
1 AATCTTATTTCCCTAAAGTTGCAGTGGAGCAAACT-GAAGTTCACA
* * * * *
32969596 AATCGTATCTCCCTGAAGTTGCAGTGGAGCAAACTAAAG-TGACA
1 AATCTTATTTCCCTAAAGTTGCAGTGGAGCAAACTGAAGTTCACA
32969640 AATC
1 AATC
32969644 CTATACCTCT
Statistics
Matches: 175, Mismatches: 49, Indels: 20
0.72 0.20 0.08
Matches are distributed among these distances:
44 74 0.42
45 59 0.34
46 5 0.03
47 2 0.01
48 1 0.01
49 2 0.01
50 2 0.01
51 6 0.03
52 24 0.14
ACGTcount: A:0.33, C:0.19, G:0.20, T:0.28
Consensus pattern (45 bp):
AATCTTATTTCCCTAAAGTTGCAGTGGAGCAAACTGAAGTTCACA
Found at i:32971304 original size:25 final size:24
Alignment explanation
Indices: 32971267--32971626 Score: 136
Period size: 27 Copynumber: 14.5 Consensus size: 24
32971257 TTTCTCATAC
32971267 ATTATTTATTTTAAATTGTTTTATT
1 ATTATTTATTTTAAATT-TTTTATT
* * * *
32971292 ATTATTTACTTTAAGTTTTTCACAT
1 ATTATTTATTTTAAATTTTTTA-TT
* ** *
32971317 ATTATATATTTTAAACTATTTCAAACT
1 ATTATTTATTTTAAA-T-TTT-TTATT
**
32971344 ATTATCCATTTTAAATTTTTTATAT
1 ATTATTTATTTTAAATTTTTTAT-T
* * *
32971369 ATTATTTAGTTTAAACTGTTATATGT
1 ATTATTTATTTTAAA-TTTTTTAT-T
*
32971395 ATTATTTATTTTGAATTTTTTATT
1 ATTATTTATTTTAAATTTTTTATT
* * * *
32971419 CTT-TTTATATGTATCAGTTATTT-TT
1 ATTATTTAT-T-T-TAAATTTTTTATT
* * * * *
32971444 A-AACTGTT-TTGTATATTATCTATT
1 ATTA-T-TTATTTTAAATTTTTTATT
* **
32971468 -TTA--AATTTCT---TTTTACAT-
1 ATTATTTATTT-TAAATTTTTTATT
32971486 ATTATTTATTTTAAAATTTTTTA-T
1 ATTATTTATTTT-AAATTTTTTATT
32971510 A-TA-TTATTTTAAATTTTCTTATAT
1 ATTATTTATTTTAAATTTT-TTAT-T
32971534 ATTATTTATTTTAAAATTTTTTCATAT
1 ATTATTTATTTT-AAATTTTTT-AT-T
32971561 ATTATTTATTTTAAACTTTTTATATAT
1 ATTATTTATTTTAAA-TTTTT-TAT-T
*
32971588 ATTATTTACTTTAAATTGTTTTTATAT
1 ATTATTTATTTTAAA-T-TTTTTAT-T
32971615 ATTATTTTATTT
1 ATTA-TTTATTT
32971627 CATATTTTCT
Statistics
Matches: 252, Mismatches: 48, Indels: 67
0.69 0.13 0.18
Matches are distributed among these distances:
19 8 0.03
20 1 0.00
21 13 0.05
22 11 0.04
23 13 0.05
24 20 0.08
25 56 0.22
26 43 0.17
27 75 0.30
28 12 0.05
ACGTcount: A:0.30, C:0.05, G:0.03, T:0.61
Consensus pattern (24 bp):
ATTATTTATTTTAAATTTTTTATT
Found at i:32971415 original size:52 final size:49
Alignment explanation
Indices: 32971267--32971414 Score: 134
Period size: 52 Copynumber: 2.9 Consensus size: 49
32971257 TTTCTCATAC
* * *
32971267 ATTATTTATTTTAAATTGTTTTATTATTATTTACTTTAAGTTTTTCACAT
1 ATTATTTATTTTAAACTG-TTTATTATTATTTATTTTAAATTTTTCACAT
* * * ** * *
32971317 ATTATATATTTTAAACTATTTCAAACTATTATCCATTTTAAATTTTTTATAT
1 ATTATTTATTTTAAACTGTTT---ATTATTATTTATTTTAAATTTTTCACAT
* *
32971369 ATTATTTAGTTTAAACTGTTATATGTATTATTTATTTTGAATTTTT
1 ATTATTTATTTTAAACTGTT-TAT-TATTATTTATTTTAAATTTTT
32971415 TATTCTTTTT
Statistics
Matches: 76, Mismatches: 17, Indels: 9
0.75 0.17 0.09
Matches are distributed among these distances:
49 3 0.04
50 16 0.21
51 18 0.24
52 38 0.50
53 1 0.01
ACGTcount: A:0.31, C:0.06, G:0.04, T:0.59
Consensus pattern (49 bp):
ATTATTTATTTTAAACTGTTTATTATTATTTATTTTAAATTTTTCACAT
Found at i:32971467 original size:27 final size:26
Alignment explanation
Indices: 32971440--32971626 Score: 195
Period size: 27 Copynumber: 7.1 Consensus size: 26
32971430 TATCAGTTAT
* * *
32971440 TTTTAAACTGTTTTGTATATTATCTA
1 TTTTAAACTTTTTTATATATTATTTA
* *
32971466 TTTTAAATTTCTTTTTACATATTATTTA
1 TTTTAAA-CT-TTTTTATATATTATTTA
*
32971494 TTTTAAA-ATTTTT-TATA-TA-TTA
1 TTTTAAACTTTTTTATATATTATTTA
32971516 TTTTAAA-TTTTCTTATATATTATTTA
1 TTTTAAACTTTT-TTATATATTATTTA
*
32971542 TTTTAAAATTTTTTCATATATTATTTA
1 TTTTAAACTTTTTT-ATATATTATTTA
32971569 TTTTAAACTTTTTATATATATTATTTA
1 TTTTAAACTTTTT-TATATATTATTTA
* *
32971596 CTTTAAATTGTTTTTATATATTATTTTA
1 TTTTAAACT-TTTTTATATATTA-TTTA
32971624 TTT
1 TTT
32971627 CATATTTTCT
Statistics
Matches: 138, Mismatches: 12, Indels: 20
0.81 0.07 0.12
Matches are distributed among these distances:
22 13 0.09
23 4 0.03
24 7 0.05
25 7 0.05
26 19 0.14
27 57 0.41
28 31 0.22
ACGTcount: A:0.30, C:0.04, G:0.02, T:0.64
Consensus pattern (26 bp):
TTTTAAACTTTTTTATATATTATTTA
Found at i:32971514 original size:19 final size:20
Alignment explanation
Indices: 32971487--32971536 Score: 57
Period size: 21 Copynumber: 2.5 Consensus size: 20
32971477 TTTTTACATA
*
32971487 TTATTTATTTTAAAATTTT-
1 TTATATATTTTAAAATTTTC
*
32971506 TTATATATTATTTTAAATTTTC
1 TTATATA-T-TTTAAAATTTTC
32971528 TTATATATT
1 TTATATATT
32971537 ATTTATTTTA
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
19 6 0.23
20 2 0.08
21 11 0.42
22 7 0.27
ACGTcount: A:0.32, C:0.02, G:0.00, T:0.66
Consensus pattern (20 bp):
TTATATATTTTAAAATTTTC
Found at i:32973618 original size:25 final size:25
Alignment explanation
Indices: 32973584--32973649 Score: 96
Period size: 25 Copynumber: 2.6 Consensus size: 25
32973574 TAAAGCTAAA
32973584 GTCTGCCTCTTGGCACGTTCTATCT
1 GTCTGCCTCTTGGCACGTTCTATCT
* * *
32973609 GTCTGCCTCTTGACATGTTCTCTCT
1 GTCTGCCTCTTGGCACGTTCTATCT
*
32973634 GTTTGCCTCTTGGCAC
1 GTCTGCCTCTTGGCAC
32973650 AAATATTATT
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 35 1.00
ACGTcount: A:0.08, C:0.32, G:0.20, T:0.41
Consensus pattern (25 bp):
GTCTGCCTCTTGGCACGTTCTATCT
Found at i:32973715 original size:36 final size:36
Alignment explanation
Indices: 32973668--32973740 Score: 146
Period size: 36 Copynumber: 2.0 Consensus size: 36
32973658 TTTGTTCTTC
32973668 TGTTTTTTCTCCTATTTGTCAGATTCTGGTATTGAT
1 TGTTTTTTCTCCTATTTGTCAGATTCTGGTATTGAT
32973704 TGTTTTTTCTCCTATTTGTCAGATTCTGGTATTGAT
1 TGTTTTTTCTCCTATTTGTCAGATTCTGGTATTGAT
32973740 T
1 T
32973741 ATCTTTTATC
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.14, C:0.14, G:0.16, T:0.56
Consensus pattern (36 bp):
TGTTTTTTCTCCTATTTGTCAGATTCTGGTATTGAT
Found at i:32981176 original size:3 final size:3
Alignment explanation
Indices: 32981168--32981198 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
32981158 TGCCAATTTA
32981168 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
32981199 GCGGCAAAGA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:32981372 original size:29 final size:28
Alignment explanation
Indices: 32981315--32981376 Score: 72
Period size: 29 Copynumber: 2.2 Consensus size: 28
32981305 GTAATTTGTA
* *
32981315 ATAAAATATATAAATAAATAATAATAAT
1 ATAAAATATATAAATAAATAAAAAGAAT
*
32981343 AGTAAAATATA-AAAGTACATAAAAAGAAT
1 A-TAAAATATATAAA-TAAATAAAAAGAAT
32981372 ATAAA
1 ATAAA
32981377 TAAATGAACT
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
28 8 0.28
29 21 0.72
ACGTcount: A:0.68, C:0.02, G:0.05, T:0.26
Consensus pattern (28 bp):
ATAAAATATATAAATAAATAAAAAGAAT
Found at i:32986671 original size:37 final size:38
Alignment explanation
Indices: 32986619--32986777 Score: 170
Period size: 37 Copynumber: 4.3 Consensus size: 38
32986609 AGGCCTAGTC
32986619 AAGGCCAACCTTTAAAAAAGGTTGAGATAGA-CTCGTCT
1 AAGG-CAACCTTTAAAAAAGGTTGAGATAGACCTCGTCT
*
32986657 AAGGCAACCTTTAAAAAAGGTT-AGGATAGACC-CCTCT
1 AAGGCAACCTTTAAAAAAGGTTGA-GATAGACCTCGTCT
* * * *
32986694 AAGACAA-CATT-AAAAAGGTCG-GCATAGACCTTGTCT
1 AAGGCAACCTTTAAAAAAGGTTGAG-ATAGACCTCGTCT
*
32986730 AAGGCAACCTTTAAAAAAGGTTGAGATAGAGC-CGTCT
1 AAGGCAACCTTTAAAAAAGGTTGAGATAGACCTCGTCT
**
32986767 AATACAACCTT
1 AAGGCAACCTT
32986778 AGGAGAAGAT
Statistics
Matches: 100, Mismatches: 13, Indels: 17
0.77 0.10 0.13
Matches are distributed among these distances:
34 1 0.01
35 15 0.15
36 13 0.13
37 50 0.50
38 20 0.20
39 1 0.01
ACGTcount: A:0.38, C:0.19, G:0.19, T:0.23
Consensus pattern (38 bp):
AAGGCAACCTTTAAAAAAGGTTGAGATAGACCTCGTCT
Found at i:32989599 original size:15 final size:16
Alignment explanation
Indices: 32989567--32989600 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 16
32989557 ATTGAAATAT
32989567 GTTATAATATAAATTAA
1 GTTATAATAT-AATTAA
32989584 GTTATAATAT-ATTAA
1 GTTATAATATAATTAA
32989599 GT
1 GT
32989601 GGGAGTGATA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 7 0.41
17 10 0.59
ACGTcount: A:0.47, C:0.00, G:0.09, T:0.44
Consensus pattern (16 bp):
GTTATAATATAATTAA
Found at i:32990759 original size:24 final size:24
Alignment explanation
Indices: 32990727--32990880 Score: 204
Period size: 24 Copynumber: 6.4 Consensus size: 24
32990717 ATGACATTGA
32990727 CACTATGTGTGCGGATTTAAATGG
1 CACTATGTGTGCGGATTTAAATGG
*
32990751 CACTATGTGTGCGGATTTGAATGG
1 CACTATGTGTGCGGATTTAAATGG
* *
32990775 CACTATGTGTGCAGATTTAAATAG
1 CACTATGTGTGCGGATTTAAATGG
*
32990799 CACTATGTGTGCGGATTTGAATGG
1 CACTATGTGTGCGGATTTAAATGG
* **
32990823 CACTATGTGTGCAGATTTTGATGG
1 CACTATGTGTGCGGATTTAAATGG
*
32990847 CACTACGTGTGCGGA-TTAGCAA-GG
1 CACTATGTGTGCGGATTTA--AATGG
32990871 CACTATGTGT
1 CACTATGTGT
32990881 ACGGGTTAGC
Statistics
Matches: 113, Mismatches: 15, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
23 2 0.02
24 110 0.97
25 1 0.01
ACGTcount: A:0.24, C:0.14, G:0.29, T:0.32
Consensus pattern (24 bp):
CACTATGTGTGCGGATTTAAATGG
Found at i:32990783 original size:48 final size:48
Alignment explanation
Indices: 32990727--32990880 Score: 238
Period size: 48 Copynumber: 3.2 Consensus size: 48
32990717 ATGACATTGA
*
32990727 CACTATGTGTGCGGATTTAAATGGCACTATGTGTGCGGATTTGAATGG
1 CACTATGTGTGCAGATTTAAATGGCACTATGTGTGCGGATTTGAATGG
*
32990775 CACTATGTGTGCAGATTTAAATAGCACTATGTGTGCGGATTTGAATGG
1 CACTATGTGTGCAGATTTAAATGGCACTATGTGTGCGGATTTGAATGG
** * *
32990823 CACTATGTGTGCAGATTTTGATGGCACTACGTGTGCGGATTAGCAA-GG
1 CACTATGTGTGCAGATTTAAATGGCACTATGTGTGCGGATTTG-AATGG
32990871 CACTATGTGT
1 CACTATGTGT
32990881 ACGGGTTAGC
Statistics
Matches: 98, Mismatches: 7, Indels: 2
0.92 0.07 0.02
Matches are distributed among these distances:
48 96 0.98
49 2 0.02
ACGTcount: A:0.24, C:0.14, G:0.29, T:0.32
Consensus pattern (48 bp):
CACTATGTGTGCAGATTTAAATGGCACTATGTGTGCGGATTTGAATGG
Found at i:32990889 original size:24 final size:25
Alignment explanation
Indices: 32990727--32990905 Score: 99
Period size: 24 Copynumber: 7.4 Consensus size: 25
32990717 ATGACATTGA
* *
32990727 CACTATGTGTGCGGATTTA-AAT-GG
1 CACTATGTGTACGGA-TTAGCATAGG
* * *
32990751 CACTATGTGTGCGGATTTGAAT-GG
1 CACTATGTGTACGGATTAGCATAGG
* * *
32990775 CACTATGTGTGCAGATTTA-AATA-G
1 CACTATGTGTACGGA-TTAGCATAGG
* * *
32990799 CACTATGTGTGCGGATTTGAAT-GG
1 CACTATGTGTACGGATTAGCATAGG
* * *
32990823 CACTATGTGTGCAGATTTTG-AT-GG
1 CACTATGTGTACGGA-TTAGCATAGG
* *
32990847 CACTACGTGTGCGGATTAGCA-AGG
1 CACTATGTGTACGGATTAGCATAGG
*
32990871 CACTATGTGTACGGGTTAGCATA-G
1 CACTATGTGTACGGATTAGCATAGG
*
32990895 CAATATGTGTA
1 CACTATGTGTA
32990906 TGAATTTCCT
Statistics
Matches: 133, Mismatches: 13, Indels: 18
0.81 0.08 0.11
Matches are distributed among these distances:
23 7 0.05
24 119 0.89
25 7 0.05
ACGTcount: A:0.25, C:0.14, G:0.29, T:0.32
Consensus pattern (25 bp):
CACTATGTGTACGGATTAGCATAGG
Found at i:32990902 original size:72 final size:72
Alignment explanation
Indices: 32990727--32990904 Score: 175
Period size: 72 Copynumber: 2.5 Consensus size: 72
32990717 ATGACATTGA
* * * * *
32990727 CACTATGTGTGCGGATTTA-AATGGCACTATGTGTGCGGATTTGAATGGCACTATGTGTGCAGAT
1 CACTATGTGTACGGA-TTAGAATAGCAATATGTGTGCAGATTTGAATGGCACTACGTGTGCAGAT
32990791 TTAAATAG
65 TTAAATAG
* * * * *
32990799 CACTATGTGTGCGGATTTGAATGGCACTATGTGTGCAGATTTTG-ATGGCACTACGTGTGCGGA-
1 CACTATGTGTACGGATTAGAATAGCAATATGTGTGCAGA-TTTGAATGGCACTACGTGTGCAGAT
*
32990862 TTAGCAA-GG
65 TTA--AATAG
* *
32990871 CACTATGTGTACGGGTTAGCATAGCAATATGTGT
1 CACTATGTGTACGGATTAGAATAGCAATATGTGT
32990905 ATGAATTTCC
Statistics
Matches: 91, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
71 5 0.05
72 80 0.88
73 6 0.07
ACGTcount: A:0.25, C:0.14, G:0.29, T:0.32
Consensus pattern (72 bp):
CACTATGTGTACGGATTAGAATAGCAATATGTGTGCAGATTTGAATGGCACTACGTGTGCAGATT
TAAATAG
Found at i:32997183 original size:15 final size:16
Alignment explanation
Indices: 32997151--32997184 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 16
32997141 ATTGAAATAT
32997151 GTTATAATATAAATTAA
1 GTTATAATAT-AATTAA
32997168 GTTATAATAT-ATTAA
1 GTTATAATATAATTAA
32997183 GT
1 GT
32997185 GGGGGGTGAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 7 0.41
17 10 0.59
ACGTcount: A:0.47, C:0.00, G:0.09, T:0.44
Consensus pattern (16 bp):
GTTATAATATAATTAA
Found at i:32998342 original size:24 final size:24
Alignment explanation
Indices: 32998310--32998466 Score: 210
Period size: 24 Copynumber: 6.5 Consensus size: 24
32998300 GAAATGACAT
32998310 TGGCACTATGTGTGCGGATTTAAA
1 TGGCACTATGTGTGCGGATTTAAA
*
32998334 TGGCACTATGTGTGCGGATTTGAA
1 TGGCACTATGTGTGCGGATTTAAA
*
32998358 TGGCACTATGTGTGCAGATTTAAA
1 TGGCACTATGTGTGCGGATTTAAA
* *
32998382 TAGCACTATGTGTGCGGATTTGAA
1 TGGCACTATGTGTGCGGATTTAAA
* **
32998406 TGGCACTATGTGTGCAGATTTTGA
1 TGGCACTATGTGTGCGGATTTAAA
*
32998430 TGGCACTACGTGTGCGGA-TTAGCAA
1 TGGCACTATGTGTGCGGATTTA--AA
32998455 -GGCACTATGTGT
1 TGGCACTATGTGT
32998467 ACGGGTTAGC
Statistics
Matches: 116, Mismatches: 15, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
23 2 0.02
24 113 0.97
25 1 0.01
ACGTcount: A:0.24, C:0.14, G:0.30, T:0.32
Consensus pattern (24 bp):
TGGCACTATGTGTGCGGATTTAAA
Found at i:32998460 original size:72 final size:72
Alignment explanation
Indices: 32998310--32998490 Score: 224
Period size: 72 Copynumber: 2.5 Consensus size: 72
32998300 GAAATGACAT
* * *
32998310 TGGCACTATGTGTGCGGATTTAAATGGCACTATGTGTGCGGATTTGAATGGCACTATGTGTGCAG
1 TGGCACTATGTGTGCGGATTTGAATGGCACTATGTGTGCAGATTTGAATGGCACTACGTGTGCAG
32998375 ATTTAAA
66 ATTTAAA
* *
32998382 TAGCACTATGTGTGCGGATTTGAATGGCACTATGTGTGCAGATTTTG-ATGGCACTACGTGTGCG
1 TGGCACTATGTGTGCGGATTTGAATGGCACTATGTGTGCAGA-TTTGAATGGCACTACGTGTGCA
32998446 GA-TTAGCAA
65 GATTTA--AA
* * * * *
32998455 -GGCACTATGTGTACGGGTTAGCATGGCAATATGTGT
1 TGGCACTATGTGTGCGGATTTGAATGGCACTATGTGT
32998491 ATGAATTTCC
Statistics
Matches: 95, Mismatches: 11, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
71 3 0.03
72 86 0.91
73 6 0.06
ACGTcount: A:0.24, C:0.14, G:0.30, T:0.32
Consensus pattern (72 bp):
TGGCACTATGTGTGCGGATTTGAATGGCACTATGTGTGCAGATTTGAATGGCACTACGTGTGCAG
ATTTAAA
Found at i:32998475 original size:24 final size:24
Alignment explanation
Indices: 32998311--32998491 Score: 97
Period size: 24 Copynumber: 7.5 Consensus size: 24
32998301 AAATGACATT
*
32998311 GGCACTATGTGTGCGGATTTA--AA
1 GGCACTATGTGTACGGA-TTAGCAA
* *
32998334 TGGCACTATGTGTGCGGATTTG-AA
1 -GGCACTATGTGTACGGATTAGCAA
* *
32998358 TGGCACTATGTGTGCAGATTTA--AA
1 -GGCACTATGTGTACGGA-TTAGCAA
* * *
32998382 TAGCACTATGTGTGCGGATTTG-AA
1 -GGCACTATGTGTACGGATTAGCAA
* * * *
32998406 TGGCACTATGTGTGCAGATTTTG-AT
1 -GGCACTATGTGTACGGA-TTAGCAA
* *
32998431 GGCACTACGTGTGCGGATTAGCAA
1 GGCACTATGTGTACGGATTAGCAA
* *
32998455 GGCACTATGTGTACGGGTTAGCAT
1 GGCACTATGTGTACGGATTAGCAA
*
32998479 GGCAATATGTGTA
1 GGCACTATGTGTA
32998492 TGAATTTCCT
Statistics
Matches: 134, Mismatches: 18, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
23 7 0.05
24 120 0.90
25 7 0.05
ACGTcount: A:0.24, C:0.14, G:0.30, T:0.31
Consensus pattern (24 bp):
GGCACTATGTGTACGGATTAGCAA
Found at i:32998482 original size:48 final size:48
Alignment explanation
Indices: 32998310--32998466 Score: 244
Period size: 48 Copynumber: 3.3 Consensus size: 48
32998300 GAAATGACAT
*
32998310 TGGCACTATGTGTGCGGATTTAAATGGCACTATGTGTGCGGATTTGAA
1 TGGCACTATGTGTGCAGATTTAAATGGCACTATGTGTGCGGATTTGAA
*
32998358 TGGCACTATGTGTGCAGATTTAAATAGCACTATGTGTGCGGATTTGAA
1 TGGCACTATGTGTGCAGATTTAAATGGCACTATGTGTGCGGATTTGAA
** * *
32998406 TGGCACTATGTGTGCAGATTTTGATGGCACTACGTGTGCGGATTAGCAA
1 TGGCACTATGTGTGCAGATTTAAATGGCACTATGTGTGCGGATTTG-AA
32998455 -GGCACTATGTGT
1 TGGCACTATGTGT
32998467 ACGGGTTAGC
Statistics
Matches: 101, Mismatches: 7, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
48 99 0.98
49 2 0.02
ACGTcount: A:0.24, C:0.14, G:0.30, T:0.32
Consensus pattern (48 bp):
TGGCACTATGTGTGCAGATTTAAATGGCACTATGTGTGCGGATTTGAA
Found at i:33000151 original size:44 final size:44
Alignment explanation
Indices: 33000102--33000716 Score: 368
Period size: 44 Copynumber: 13.9 Consensus size: 44
33000092 GGAATTGTCG
* * *
33000102 CTTCAATCTGCTCCACTGCAACTTCAGGGAAATAATATTCGGAA
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTCGTAA
* * * *
33000146 CTTCAATCTGCTTCACTACAACTTCAGGGAGATAAGATTCTTAT
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTCGTAA
* **
33000190 CTACAATCTGCTCCACTGCATTTTCAGGGAGATAAGACTT-GTAA
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGA-TTCGTAA
* * * * * ** *
33000234 CTTCAACCTGCTCCACTGCAACTCCAAGGAGATGAGGTTTATAG
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTCGTAA
* * * * * *
33000278 CTTTAGTCTGCTCTACTGCAACTTCAGAGAGATAAGATTTGCTAT
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTCG-TAA
* * * * * * *
33000323 CCTCAATTTGCTCCACTGCATCTTTAGGGAGACAAGACTT-ATAG
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGA-TTCGTAA
* ** * * * *
33000367 CTTTAA-CATGCTTTACTACAACTTCAGGGAGACAAGATTTGTTAT
1 CTTCAATC-TGCTCCACTGCAACTTCAGGGAGATAAGATTCG-TAA
* * * *
33000412 CTTCAATCTACTCCACTGCAACTTCAGGGAGATAATACTT-ATAG
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGA-TTCGTAA
* * * ** * *
33000456 CTTTAACCTGCTCTACTGCAACTTCAAAGAGACAAGATTTTC-TAT
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGA--TTCGTAA
* * * * * *
33000501 CTTCAATCTGCTTCACTGCATCTTTAGGGAGACAAGACTT-ATAG
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGA-TTCGTAA
* ** * * * *
33000545 CTTTAA-CATGCTTTACTACAACTTCAGGGAGACAAGATTTGTTAT
1 CTTCAATC-TGCTCCACTGCAACTTCAGGGAGATAAGATTCG-TAA
*
33000590 CTTCAATCTACTCCACTGCAACTTCAGGGAGATAAGACTT-GTAA
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGA-TTCGTAA
* * * * **
33000634 -TTGCAACCTGCTCCACTTCAACTTCAAGTAGATAAGACTT-GTGG
1 CTT-CAATCTGCTCCACTGCAACTTCAGGGAGATAAGA-TTCGTAA
* * * * *
33000678 CTTTAATTTGCTCCAATACAACTTCGGGGAGATAAGATT
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATT
33000717 TGCTACGATG
Statistics
Matches: 438, Mismatches: 114, Indels: 39
0.74 0.19 0.07
Matches are distributed among these distances:
43 11 0.03
44 290 0.66
45 129 0.29
46 8 0.02
ACGTcount: A:0.30, C:0.23, G:0.16, T:0.31
Consensus pattern (44 bp):
CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTCGTAA
Found at i:33000456 original size:178 final size:178
Alignment explanation
Indices: 33000212--33000660 Score: 659
Period size: 178 Copynumber: 2.5 Consensus size: 178
33000202 CCACTGCATT
* * * * * * * * **
33000212 TTCAGGGAGATAAGACTTG-TAACTTCAACCTGCTCCACTGCAACTCCAAGGAGATGAGGTTTAT
1 TTCAGGGAGACAAGATTTGTTATCTTCAATCTACTCCACTGCAACTTCAGGGAGATAAGACTTAT
** * * *
33000276 AGCTTTAGTCTGCTCTACTGCAACTTCAGAGAGATAAGATTTGCTATCCTCAATTTGCTCCACTG
66 AGCTTTAACCTGCTCTACTGCAACTTCAAAGAGACAAGATTTGCTATCCTCAATCTGCTCCACTG
33000341 CATCTTTAGGGAGACAAGACTTATAGCTTTAACATGCTTTACTACAAC
131 CATCTTTAGGGAGACAAGACTTATAGCTTTAACATGCTTTACTACAAC
*
33000389 TTCAGGGAGACAAGATTTGTTATCTTCAATCTACTCCACTGCAACTTCAGGGAGATAATACTTAT
1 TTCAGGGAGACAAGATTTGTTATCTTCAATCTACTCCACTGCAACTTCAGGGAGATAAGACTTAT
* * *
33000454 AGCTTTAACCTGCTCTACTGCAACTTCAAAGAGACAAGATTTTCTATCTTCAATCTGCTTCACTG
66 AGCTTTAACCTGCTCTACTGCAACTTCAAAGAGACAAGATTTGCTATCCTCAATCTGCTCCACTG
33000519 CATCTTTAGGGAGACAAGACTTATAGCTTTAACATGCTTTACTACAAC
131 CATCTTTAGGGAGACAAGACTTATAGCTTTAACATGCTTTACTACAAC
*
33000567 TTCAGGGAGACAAGATTTGTTATCTTCAATCTACTCCACTGCAACTTCAGGGAGATAAGACTTGT
1 TTCAGGGAGACAAGATTTGTTATCTTCAATCTACTCCACTGCAACTTCAGGGAGATAAGACTTAT
* * * *
33000632 A-ATTGCAACCTGCTCCACTTCAACTTCAA
66 AGCTT-TAACCTGCTCTACTGCAACTTCAA
33000661 GTAGATAAGA
Statistics
Matches: 245, Mismatches: 25, Indels: 3
0.90 0.09 0.01
Matches are distributed among these distances:
177 19 0.08
178 226 0.92
ACGTcount: A:0.30, C:0.23, G:0.16, T:0.31
Consensus pattern (178 bp):
TTCAGGGAGACAAGATTTGTTATCTTCAATCTACTCCACTGCAACTTCAGGGAGATAAGACTTAT
AGCTTTAACCTGCTCTACTGCAACTTCAAAGAGACAAGATTTGCTATCCTCAATCTGCTCCACTG
CATCTTTAGGGAGACAAGACTTATAGCTTTAACATGCTTTACTACAAC
Found at i:33000656 original size:89 final size:89
Alignment explanation
Indices: 33000109--33000714 Score: 542
Period size: 89 Copynumber: 6.8 Consensus size: 89
33000099 TCGCTTCAAT
* * * * * * * * *
33000109 CTGCTCCACTGCAACTTCAGGGAAATAATATTCG-GAACTTCAATCTGCTTCACTACAACTTCAG
1 CTGCTCTACTGCAACTTCAGGGAGACAAGATTTGTTATCTTCAATCTGCTCCACTGCAACTTCAG
** *
33000173 GGAGATAAGATTCTTAT--CTACAAT
66 GGAGATAAGA--CTTATAGCTTTAAC
* ** * * * * * *
33000197 CTGCTCCACTGCATTTTCAGGGAGATAAGACTTG-TAACTTCAACCTGCTCCACTGCAACTCCAA
1 CTGCTCTACTGCAACTTCAGGGAGACAAGATTTGTTATCTTCAATCTGCTCCACTGCAACTTCAG
* ** **
33000261 GGAGATGAGGTTTATAGCTTTAGT
66 GGAGATAAGACTTATAGCTTTAAC
* * * * * * *
33000285 CTGCTCTACTGCAACTTCAGAGAGATAAGATTTGCTATCCTCAATTTGCTCCACTGCATCTTTAG
1 CTGCTCTACTGCAACTTCAGGGAGACAAGATTTGTTATCTTCAATCTGCTCCACTGCAACTTCAG
*
33000350 GGAGACAAGACTTATAGCTTTAAC
66 GGAGATAAGACTTATAGCTTTAAC
* * * *
33000374 ATGCTTTACTACAACTTCAGGGAGACAAGATTTGTTATCTTCAATCTACTCCACTGCAACTTCAG
1 CTGCTCTACTGCAACTTCAGGGAGACAAGATTTGTTATCTTCAATCTGCTCCACTGCAACTTCAG
*
33000439 GGAGATAATACTTATAGCTTTAAC
66 GGAGATAAGACTTATAGCTTTAAC
** * * *
33000463 CTGCTCTACTGCAACTTCAAAGAGACAAGATTT-TCTATCTTCAATCTGCTTCACTGCATCTTTA
1 CTGCTCTACTGCAACTTCAGGGAGACAAGATTTGT-TATCTTCAATCTGCTCCACTGCAACTTCA
*
33000527 GGGAGACAAGACTTATAGCTTTAAC
65 GGGAGATAAGACTTATAGCTTTAAC
* * * *
33000552 ATGCTTTACTACAACTTCAGGGAGACAAGATTTGTTATCTTCAATCTACTCCACTGCAACTTCAG
1 CTGCTCTACTGCAACTTCAGGGAGACAAGATTTGTTATCTTCAATCTGCTCCACTGCAACTTCAG
* * *
33000617 GGAGATAAGACTTGTA-ATTGCAAC
66 GGAGATAAGACTTATAGCTT-TAAC
* * * * * * ** * * * * *
33000641 CTGCTCCACTTCAACTTCAAGTAGATAAGACTTG-TGGCTTTAATTTGCTCCAATACAACTTCGG
1 CTGCTCTACTGCAACTTCAGGGAGACAAGATTTGTTATCTTCAATCTGCTCCACTGCAACTTCAG
33000705 GGAGATAAGA
66 GGAGATAAGA
33000715 TTTGCTACGA
Statistics
Matches: 422, Mismatches: 90, Indels: 12
0.81 0.17 0.02
Matches are distributed among these distances:
86 4 0.01
88 128 0.30
89 289 0.68
90 1 0.00
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.31
Consensus pattern (89 bp):
CTGCTCTACTGCAACTTCAGGGAGACAAGATTTGTTATCTTCAATCTGCTCCACTGCAACTTCAG
GGAGATAAGACTTATAGCTTTAAC
Found at i:33002678 original size:42 final size:43
Alignment explanation
Indices: 33002629--33002736 Score: 114
Period size: 43 Copynumber: 2.5 Consensus size: 43
33002619 TGAGATTACG
* *
33002629 TGTAAGACCATATCTGGGATATGA-AATCAATATGAGA-CTTCA
1 TGTAAGACCATATCTGGGATATGAGAATCAATACGAGATC-CCA
* * * **
33002671 TGTAAGACCATAGT-TGGGCTATTAGCATTGATACGAGATCCCA
1 TGTAAGACCATA-TCTGGGATATGAGAATCAATACGAGATCCCA
33002714 TGTAAGACCATATCTGGGATATG
1 TGTAAGACCATATCTGGGATATG
33002737 GCATTGGTAT
Statistics
Matches: 53, Mismatches: 9, Indels: 7
0.77 0.13 0.10
Matches are distributed among these distances:
42 21 0.40
43 31 0.58
44 1 0.02
ACGTcount: A:0.33, C:0.16, G:0.22, T:0.29
Consensus pattern (43 bp):
TGTAAGACCATATCTGGGATATGAGAATCAATACGAGATCCCA
Found at i:33012805 original size:22 final size:22
Alignment explanation
Indices: 33012777--33012832 Score: 103
Period size: 22 Copynumber: 2.5 Consensus size: 22
33012767 GAACAATGTC
33012777 ACACGCCCGTGTGACCTAGGGG
1 ACACGCCCGTGTGACCTAGGGG
33012799 ACACGCCCGTGTGACCTAGGGG
1 ACACGCCCGTGTGACCTAGGGG
*
33012821 ACACACCCGTGT
1 ACACGCCCGTGT
33012833 TCTCTTCTTA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 33 1.00
ACGTcount: A:0.20, C:0.34, G:0.32, T:0.14
Consensus pattern (22 bp):
ACACGCCCGTGTGACCTAGGGG
Found at i:33013583 original size:18 final size:18
Alignment explanation
Indices: 33013571--33013614 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
33013561 CAGTTACTCT
33013571 ATAACAGTCAGTTATACA
1 ATAACAGTCAGTTATACA
* *
33013589 ATAACAGTCATTTATTCA
1 ATAACAGTCAGTTATACA
*
33013607 GTAACAGT
1 ATAACAGT
33013615 AAATTATTCC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.41, C:0.16, G:0.11, T:0.32
Consensus pattern (18 bp):
ATAACAGTCAGTTATACA
Found at i:33014926 original size:13 final size:13
Alignment explanation
Indices: 33014895--33014919 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
33014885 TATATTACTT
33014895 TATAATATAATAA
1 TATAATATAATAA
33014908 TATAATATAATA
1 TATAATATAATA
33014920 CTTTAATTAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (13 bp):
TATAATATAATAA
Found at i:33018132 original size:26 final size:26
Alignment explanation
Indices: 33018086--33018138 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
33018076 TCAAACATGC
*
33018086 ATTTAGGTCAATTTAACCCTAGGGGT
1 ATTTAGGTCAATTTAACCCTAAGGGT
* *
33018112 ATTTCGGT-AATTTATCTCCTAAGGGT
1 ATTTAGGTCAATTTAAC-CCTAAGGGT
33018138 A
1 A
33018139 AAACTGTAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.26, C:0.15, G:0.21, T:0.38
Consensus pattern (26 bp):
ATTTAGGTCAATTTAACCCTAAGGGT
Found at i:33019657 original size:26 final size:26
Alignment explanation
Indices: 33019622--33019729 Score: 171
Period size: 26 Copynumber: 4.2 Consensus size: 26
33019612 TGAAATGCCC
* * *
33019622 ATCATAGAACATTTACTTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
33019648 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
33019674 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
33019700 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
33019726 ATCA
1 ATCA
33019730 ATTTGTACCA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.37, C:0.23, G:0.06, T:0.33
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:33023012 original size:18 final size:19
Alignment explanation
Indices: 33022971--33023012 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 19
33022961 TTAGTTTTTC
* *
33022971 CTTTCTCTTTTCTTTCTTT
1 CTTTCTCTTTTCTTGCTCT
33022990 CTTTCT-TTTTCTTGCTCT
1 CTTTCTCTTTTCTTGCTCT
*
33023008 GTTTC
1 CTTTC
33023013 ATATGCCTCT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
18 14 0.70
19 6 0.30
ACGTcount: A:0.00, C:0.26, G:0.05, T:0.69
Consensus pattern (19 bp):
CTTTCTCTTTTCTTGCTCT
Found at i:33023339 original size:3 final size:3
Alignment explanation
Indices: 33023333--33023362 Score: 51
Period size: 3 Copynumber: 10.0 Consensus size: 3
33023323 ATAATAATAA
*
33023333 TAT TAT TAT TAT TAT TAT TAG TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
33023363 AACAATAATT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.63
Consensus pattern (3 bp):
TAT
Found at i:33023530 original size:32 final size:30
Alignment explanation
Indices: 33023491--33023563 Score: 85
Period size: 32 Copynumber: 2.3 Consensus size: 30
33023481 ATTATTTAAT
*
33023491 TAATAAATATCGT-TTAACTTTATAATAATAAG
1 TAATAAATATC-TATTAAC-TTA-AATAAAAAG
*
33023523 TAATAAATATCTATTTACTTAAATAAAAAG
1 TAATAAATATCTATTAACTTAAATAAAAAG
33023553 TAATTAAATAT
1 TAA-TAAATAT
33023564 TTATGTTACA
Statistics
Matches: 37, Mismatches: 2, Indels: 5
0.84 0.05 0.11
Matches are distributed among these distances:
30 11 0.30
31 11 0.30
32 15 0.41
ACGTcount: A:0.51, C:0.05, G:0.04, T:0.40
Consensus pattern (30 bp):
TAATAAATATCTATTAACTTAAATAAAAAG
Found at i:33031326 original size:15 final size:15
Alignment explanation
Indices: 33031290--33031339 Score: 50
Period size: 15 Copynumber: 3.3 Consensus size: 15
33031280 TGAGAATATC
33031290 AAAAATAATAA-AAGA
1 AAAAATAATAATAA-A
*
33031305 AATAATAA-AATAACA
1 AAAAATAATAATAA-A
33031320 AAAAATAATATATAAA
1 AAAAATAATA-ATAAA
33031336 AAAA
1 AAAA
33031340 GTTAAAATAA
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
14 2 0.07
15 17 0.59
16 6 0.21
17 4 0.14
ACGTcount: A:0.78, C:0.02, G:0.02, T:0.18
Consensus pattern (15 bp):
AAAAATAATAATAAA
Found at i:33033972 original size:227 final size:227
Alignment explanation
Indices: 33033577--33034031 Score: 910
Period size: 227 Copynumber: 2.0 Consensus size: 227
33033567 TTATCTTTCA
33033577 CCCCAAACTTGTAATATTTTACTTCTAACTCCTTATAATATCGAATTCCTAGCTTCCCCCACATG
1 CCCCAAACTTGTAATATTTTACTTCTAACTCCTTATAATATCGAATTCCTAGCTTCCCCCACATG
33033642 GGCAGCCAATTTATTTGGGGAAATGCTTTAGTTGAAAGCAATTGGAAGCATTCATTGAAAGTCCT
66 GGCAGCCAATTTATTTGGGGAAATGCTTTAGTTGAAAGCAATTGGAAGCATTCATTGAAAGTCCT
33033707 TACATTGCCGATTAGGTAGTAAACCTATCCCTTTTTATTTATTTTGTCAAATATACTAATTCTTT
131 TACATTGCCGATTAGGTAGTAAACCTATCCCTTTTTATTTATTTTGTCAAATATACTAATTCTTT
33033772 TCTAATTCATGGTAAAAGATGCATCATGCATG
196 TCTAATTCATGGTAAAAGATGCATCATGCATG
33033804 CCCCAAACTTGTAATATTTTACTTCTAACTCCTTATAATATCGAATTCCTAGCTTCCCCCACATG
1 CCCCAAACTTGTAATATTTTACTTCTAACTCCTTATAATATCGAATTCCTAGCTTCCCCCACATG
33033869 GGCAGCCAATTTATTTGGGGAAATGCTTTAGTTGAAAGCAATTGGAAGCATTCATTGAAAGTCCT
66 GGCAGCCAATTTATTTGGGGAAATGCTTTAGTTGAAAGCAATTGGAAGCATTCATTGAAAGTCCT
33033934 TACATTGCCGATTAGGTAGTAAACCTATCCCTTTTTATTTATTTTGTCAAATATACTAATTCTTT
131 TACATTGCCGATTAGGTAGTAAACCTATCCCTTTTTATTTATTTTGTCAAATATACTAATTCTTT
33033999 TCTAATTCATGGTAAAAGATGCATCATGCATG
196 TCTAATTCATGGTAAAAGATGCATCATGCATG
33034031 C
1 C
33034032 ATGCATGCAC
Statistics
Matches: 228, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
227 228 1.00
ACGTcount: A:0.29, C:0.20, G:0.14, T:0.36
Consensus pattern (227 bp):
CCCCAAACTTGTAATATTTTACTTCTAACTCCTTATAATATCGAATTCCTAGCTTCCCCCACATG
GGCAGCCAATTTATTTGGGGAAATGCTTTAGTTGAAAGCAATTGGAAGCATTCATTGAAAGTCCT
TACATTGCCGATTAGGTAGTAAACCTATCCCTTTTTATTTATTTTGTCAAATATACTAATTCTTT
TCTAATTCATGGTAAAAGATGCATCATGCATG
Found at i:33034812 original size:8 final size:8
Alignment explanation
Indices: 33034801--33034849 Score: 64
Period size: 8 Copynumber: 6.1 Consensus size: 8
33034791 AATCCTTTAA
33034801 AAAAATAT
1 AAAAATAT
33034809 AAAAATAT
1 AAAAATAT
33034817 AAAAATAT
1 AAAAATAT
33034825 -AAAATATT
1 AAAAATA-T
*
33034833 AAAATTAT
1 AAAAATAT
*
33034841 AAAATTAT
1 AAAAATAT
33034849 A
1 A
33034850 TTTTTATCAT
Statistics
Matches: 38, Mismatches: 1, Indels: 4
0.88 0.02 0.09
Matches are distributed among these distances:
7 6 0.16
8 27 0.71
9 5 0.13
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (8 bp):
AAAAATAT
Found at i:33037970 original size:131 final size:131
Alignment explanation
Indices: 33037807--33038168 Score: 404
Period size: 131 Copynumber: 2.8 Consensus size: 131
33037797 AAAGGAATGT
* * ** * * * * *
33037807 TCGATCATTTTGAGCAAACGAGAAATCACAACCCAGCACGATAGGGCATGATT-CTCGAATTGTC
1 TCGATTATTTTGAGCAAACGCGAAATTGCAACCCAACACGTTAGGGCACGATTCCGCGAATTGAC
* * * ** *
33037871 AAATGCCGAATATTGCCTTCGTTTTAAATAATTTTTAGGAGATATGAATGAAATCTTGAAGGGAT
66 AAATACCGAATATCGCCTTCGTTTTAAAGAA-TTTTAAAAGACATGAATGAAATCTTGAAGGGAT
33037936 AC
130 AC
33037938 TCGATTATTTTGAGCAAACGCGAAATTGCAACCCAACACGTTAGGGCACGATTCCGCGAATT-AC
1 TCGATTATTTTGAGCAAACGCGAAATTGCAACCCAACACGTTAGGGCACGATTCCGCGAATTGAC
** * * ** * *
33038002 TAAATATTGAATCTCGTCTTCGTTTTGGAGAATTTTAAAAGACATGAATGAAATTTTGAAGTGAT
66 -AAATACCGAATATCGCCTTCGTTTTAAAGAATTTTAAAAGACATGAATGAAATCTTGAAGGGAT
*
33038067 AT
130 AC
* * *
33038069 TTGATTATTTTGAGCAAGCGCGAAATTGCAACCCAACACGTTAGGGCACGATTCCGCGAATTGCC
1 TCGATTATTTTGAGCAAACGCGAAATTGCAACCCAACACGTTAGGGCACGATTCCGCGAATTGAC
* * * * *
33038134 AAACATCGAATCTCGTCTTCGTTTTGAAGAATTTT
66 AAATACCGAATATCGCCTTCGTTTTAAAGAATTTT
33038169 TTGAATAAAT
Statistics
Matches: 198, Mismatches: 30, Indels: 6
0.85 0.13 0.03
Matches are distributed among these distances:
131 168 0.85
132 30 0.15
ACGTcount: A:0.32, C:0.18, G:0.20, T:0.30
Consensus pattern (131 bp):
TCGATTATTTTGAGCAAACGCGAAATTGCAACCCAACACGTTAGGGCACGATTCCGCGAATTGAC
AAATACCGAATATCGCCTTCGTTTTAAAGAATTTTAAAAGACATGAATGAAATCTTGAAGGGATA
C
Found at i:33041219 original size:87 final size:87
Alignment explanation
Indices: 33041091--33041255 Score: 267
Period size: 87 Copynumber: 1.9 Consensus size: 87
33041081 AGGGAGACAT
* * * * *
33041091 GATCTTAAATTTCAGCCTACTCCACTACAACTTTAGCGAGCTAGGTTGGTGGCTTAAATCTGCTT
1 GATCTAAAATTTCAACCTACTCCACTACAACTTTAGCGAGCTAGGTTAGTGACTTAAATCGGCTT
33041156 CACTGCAACTTCAAGAAAACGG
66 CACTGCAACTTCAAGAAAACGG
* *
33041178 GATCTAAAATTTCAACCTACTCCATTACAACTTTAGGGAGCTAGGTTAGTGACTTAAATCGGCTT
1 GATCTAAAATTTCAACCTACTCCACTACAACTTTAGCGAGCTAGGTTAGTGACTTAAATCGGCTT
33041243 CACTGCAACTTCA
66 CACTGCAACTTCA
33041256 GGAAGCCGAG
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
87 71 1.00
ACGTcount: A:0.30, C:0.24, G:0.17, T:0.30
Consensus pattern (87 bp):
GATCTAAAATTTCAACCTACTCCACTACAACTTTAGCGAGCTAGGTTAGTGACTTAAATCGGCTT
CACTGCAACTTCAAGAAAACGG
Found at i:33041345 original size:44 final size:44
Alignment explanation
Indices: 33041274--33041593 Score: 423
Period size: 44 Copynumber: 7.3 Consensus size: 44
33041264 AGATTCGTCG
* * *
33041274 TCTTCGATCTG-CGCTCTGTCAACACAGAGATGCCAAATCTGCTA
1 TCTTCGATCTGTC-CTCTGACAATACAGAGACGCCAAATCTGCTA
33041318 TCTTCGATCTGTCCTCTGACAATACAGAGACGCCAAATCTGCTA
1 TCTTCGATCTGTCCTCTGACAATACAGAGACGCCAAATCTGCTA
* * *
33041362 TCTTCGATCTGCTCTTC-GCCAATACAGAGACGCCAAATCTACTA
1 TCTTCGATCTG-TCCTCTGACAATACAGAGACGCCAAATCTGCTA
* *
33041406 TGTTCGATCTGCCCTCTGACAATACAGAGACGCCAAATCTGCTA
1 TCTTCGATCTGTCCTCTGACAATACAGAGACGCCAAATCTGCTA
* *
33041450 TCTTCGATCTGCCCTCTGACAATACAGAGGCGCCAAATCTGCTA
1 TCTTCGATCTGTCCTCTGACAATACAGAGACGCCAAATCTGCTA
* *
33041494 TCTTCGATCTG-CTCTCTGCCAATACAGAGACGCCAAATTTGCTA
1 TCTTCGATCTGTC-CTCTGACAATACAGAGACGCCAAATCTGCTA
* * * *
33041538 TCTTCGATCT-ACTCTCCGCCAATACAGAGATGCCAAATCTGCTA
1 TCTTCGATCTGTC-CTCTGACAATACAGAGACGCCAAATCTGCTA
*
33041582 TATTCGATCTGT
1 TCTTCGATCTGT
33041594 TTCCGCCAAT
Statistics
Matches: 249, Mismatches: 21, Indels: 11
0.89 0.07 0.04
Matches are distributed among these distances:
43 4 0.02
44 240 0.96
45 5 0.02
ACGTcount: A:0.26, C:0.30, G:0.16, T:0.28
Consensus pattern (44 bp):
TCTTCGATCTGTCCTCTGACAATACAGAGACGCCAAATCTGCTA
Found at i:33041515 original size:132 final size:132
Alignment explanation
Indices: 33041274--33041592 Score: 496
Period size: 132 Copynumber: 2.4 Consensus size: 132
33041264 AGATTCGTCG
* * * *
33041274 TCTTCGATCTGCGCTCTGTCAACACAGAGATGCCAAATCTGCTATCTTCGATCTGTCCTCTGACA
1 TCTTCGATCTGCCCTCTGACAATACAGAGATGCCAAATCTGCTATCTTCGATCTGCCCTCTGACA
33041339 ATACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTTCGCCAATACAGAGACGCCAAATCTAC
66 ATACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTTCGCCAATACAGAGACGCCAAATCTAC
33041404 TA
131 TA
* *
33041406 TGTTCGATCTGCCCTCTGACAATACAGAGACGCCAAATCTGCTATCTTCGATCTGCCCTCTGACA
1 TCTTCGATCTGCCCTCTGACAATACAGAGATGCCAAATCTGCTATCTTCGATCTGCCCTCTGACA
* * *
33041471 ATACAGAGGCGCCAAATCTGCTATCTTCGATCTGCTC-TCTGCCAATACAGAGACGCCAAATTTG
66 ATACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTTC-GCCAATACAGAGACGCCAAATCTA
33041535 CTA
130 CTA
* * * * *
33041538 TCTTCGATCTACTCTCCGCCAATACAGAGATGCCAAATCTGCTATATTCGATCTG
1 TCTTCGATCTGCCCTCTGACAATACAGAGATGCCAAATCTGCTATCTTCGATCTG
33041593 TTTCCGCCAA
Statistics
Matches: 170, Mismatches: 16, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
131 2 0.01
132 168 0.99
ACGTcount: A:0.26, C:0.30, G:0.16, T:0.28
Consensus pattern (132 bp):
TCTTCGATCTGCCCTCTGACAATACAGAGATGCCAAATCTGCTATCTTCGATCTGCCCTCTGACA
ATACAGAGACGCCAAATCTGCTATCTTCGATCTGCTCTTCGCCAATACAGAGACGCCAAATCTAC
TA
Found at i:33049983 original size:27 final size:27
Alignment explanation
Indices: 33049953--33050130 Score: 180
Period size: 27 Copynumber: 6.6 Consensus size: 27
33049943 ATATCGAGTC
* *
33049953 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
*
33049980 CGCACACTTAGTGCTACATAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
* *
33050007 CGCACACTTAGTGCCACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
33050035 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
33050062 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* *
33050089 CGCACACTTAGTGCAACATAGTCGAA-T
1 CGCACACTTAGTGCTACATAATC-AACT
33050116 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
33050131 GTACAATTTA
Statistics
Matches: 131, Mismatches: 16, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
27 105 0.80
28 26 0.20
ACGTcount: A:0.30, C:0.29, G:0.15, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:33050092 original size:82 final size:81
Alignment explanation
Indices: 33049974--33050129 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
33049964 TGCTATATAA
*
33049974 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCCACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
33050039 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * ** *
33050056 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
33050120 CACTTAGTGC
65 CACTTAGTGC
33050130 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.26
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:33060738 original size:19 final size:19
Alignment explanation
Indices: 33060703--33060740 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
33060693 CTCACCTACC
33060703 TAAAAAACCAAATTACCCA
1 TAAAAAACCAAATTACCCA
*
33060722 TAAATAAACCCAA-TACCCA
1 TAAA-AAACCAAATTACCCA
33060741 ATAGGCCCAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 10 0.59
20 7 0.41
ACGTcount: A:0.55, C:0.29, G:0.00, T:0.16
Consensus pattern (19 bp):
TAAAAAACCAAATTACCCA
Found at i:33062533 original size:14 final size:13
Alignment explanation
Indices: 33062504--33062548 Score: 51
Period size: 12 Copynumber: 3.6 Consensus size: 13
33062494 AGTGGCTGGA
33062504 AATAATATT-A-T
1 AATAATATTAAGT
33062515 AATAATATTAAAGT
1 AATAATATT-AAGT
*
33062529 TATAATA-TAAGT
1 AATAATATTAAGT
33062541 AATAATAT
1 AATAATAT
33062549 GTATATATTA
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
11 9 0.32
12 10 0.36
13 2 0.07
14 7 0.25
ACGTcount: A:0.56, C:0.00, G:0.04, T:0.40
Consensus pattern (13 bp):
AATAATATTAAGT
Found at i:33062939 original size:9 final size:9
Alignment explanation
Indices: 33062925--33062953 Score: 58
Period size: 9 Copynumber: 3.2 Consensus size: 9
33062915 GACTAAAATG
33062925 TGAAATAAA
1 TGAAATAAA
33062934 TGAAATAAA
1 TGAAATAAA
33062943 TGAAATAAA
1 TGAAATAAA
33062952 TG
1 TG
33062954 GACTAGTATG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.62, C:0.00, G:0.14, T:0.24
Consensus pattern (9 bp):
TGAAATAAA
Found at i:33063895 original size:50 final size:51
Alignment explanation
Indices: 33063702--33063894 Score: 162
Period size: 50 Copynumber: 3.8 Consensus size: 51
33063692 ATCTTGTATT
* * *
33063702 TATTCGGCCACATAGGTATGTACATATGTGATGTTATA-TTGAATCTTGAA
1 TATTCGGCCATATAGGTATGCACATATGTGATATTATATTTGAATCTTGAA
* * * * *
33063752 TATTTGACCATGA-AGGTATGCACAAAAGTGATATTATATTTGAAT-TTGTA
1 TATTCGGCCAT-ATAGGTATGCACATATGTGATATTATATTTGAATCTTGAA
* * * * * * * *
33063802 TATTCAGCCATAT-GAGTAAGTACTTAGGTGATGTTAAATTTG-ATCTTGCA
1 TATTCGGCCATATAG-GTATGCACATATGTGATATTATATTTGAATCTTGAA
* * *
33063852 TATTTGGCCATATAGGTATGCACATTTGTGATATTATCTTTGA
1 TATTCGGCCATATAGGTATGCACATATGTGATATTATATTTGA
33063895 TTCTCTATAA
Statistics
Matches: 107, Mismatches: 29, Indels: 13
0.72 0.19 0.09
Matches are distributed among these distances:
49 4 0.04
50 95 0.89
51 8 0.07
ACGTcount: A:0.31, C:0.11, G:0.19, T:0.39
Consensus pattern (51 bp):
TATTCGGCCATATAGGTATGCACATATGTGATATTATATTTGAATCTTGAA
Found at i:33070079 original size:14 final size:13
Alignment explanation
Indices: 33070050--33070094 Score: 51
Period size: 12 Copynumber: 3.6 Consensus size: 13
33070040 AGTGGGTGGA
33070050 AATAATATT-A-T
1 AATAATATTAAGT
33070061 AATAATATTAAAGT
1 AATAATATT-AAGT
*
33070075 TATAATA-TAAGT
1 AATAATATTAAGT
33070087 AATAATAT
1 AATAATAT
33070095 GTATATATTA
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
11 9 0.32
12 10 0.36
13 2 0.07
14 7 0.25
ACGTcount: A:0.56, C:0.00, G:0.04, T:0.40
Consensus pattern (13 bp):
AATAATATTAAGT
Found at i:33070485 original size:9 final size:9
Alignment explanation
Indices: 33070471--33070499 Score: 58
Period size: 9 Copynumber: 3.2 Consensus size: 9
33070461 GACTAAAATG
33070471 TGAAATAAA
1 TGAAATAAA
33070480 TGAAATAAA
1 TGAAATAAA
33070489 TGAAATAAA
1 TGAAATAAA
33070498 TG
1 TG
33070500 GACTAGTATG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.62, C:0.00, G:0.14, T:0.24
Consensus pattern (9 bp):
TGAAATAAA
Found at i:33071340 original size:50 final size:51
Alignment explanation
Indices: 33071147--33071339 Score: 162
Period size: 50 Copynumber: 3.8 Consensus size: 51
33071137 ATCTTGTATT
* * *
33071147 TATTCGGCCACATAGGTATGTACATATGTGATGTTATA-TTGAATCTTGAA
1 TATTCGGCCATATAGGTATGCACATATGTGATATTATATTTGAATCTTGAA
* * * * *
33071197 TATTTGACCATGA-AGGTATGCACAAAAGTGATATTATATTTGAAT-TTGTA
1 TATTCGGCCAT-ATAGGTATGCACATATGTGATATTATATTTGAATCTTGAA
* * * * * * * *
33071247 TATTCAGCCATAT-GAGTAAGTACTTAGGTGATGTTAAATTTG-ATCTTGCA
1 TATTCGGCCATATAG-GTATGCACATATGTGATATTATATTTGAATCTTGAA
* * *
33071297 TATTTGGCCATATAGGTATGCACATTTGTGATATTATCTTTGA
1 TATTCGGCCATATAGGTATGCACATATGTGATATTATATTTGA
33071340 TTCTCTATAA
Statistics
Matches: 107, Mismatches: 29, Indels: 13
0.72 0.19 0.09
Matches are distributed among these distances:
49 4 0.04
50 95 0.89
51 8 0.07
ACGTcount: A:0.31, C:0.11, G:0.19, T:0.39
Consensus pattern (51 bp):
TATTCGGCCATATAGGTATGCACATATGTGATATTATATTTGAATCTTGAA
Found at i:33073426 original size:19 final size:19
Alignment explanation
Indices: 33073402--33073441 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
33073392 GAAAAAAATG
33073402 TTTGCTTGTACATAAATAA
1 TTTGCTTGTACATAAATAA
33073421 TTTGCTTGTACATAAATAA
1 TTTGCTTGTACATAAATAA
33073440 TT
1 TT
33073442 AAATAAAATG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.35, C:0.10, G:0.10, T:0.45
Consensus pattern (19 bp):
TTTGCTTGTACATAAATAA
Found at i:33074216 original size:11 final size:11
Alignment explanation
Indices: 33074200--33074244 Score: 54
Period size: 11 Copynumber: 3.8 Consensus size: 11
33074190 TAGAAAAATC
33074200 TTATTTTATTT
1 TTATTTTATTT
33074211 TTATTTTTATTTT
1 TTA-TTTTA-TTT
33074224 TTGATTTTATTT
1 TT-ATTTTATTT
*
33074236 TGATTTTAT
1 TTATTTTAT
33074245 ATTAAATTAG
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
11 10 0.33
12 9 0.30
13 10 0.33
14 1 0.03
ACGTcount: A:0.18, C:0.00, G:0.04, T:0.78
Consensus pattern (11 bp):
TTATTTTATTT
Found at i:33076259 original size:48 final size:48
Alignment explanation
Indices: 33076186--33076287 Score: 141
Period size: 48 Copynumber: 2.1 Consensus size: 48
33076176 TTTTAAGGGG
* * * *
33076186 ATCACATATTGATGTCAATGCCATGTCCCAGATATGGTCTTACATGGT
1 ATCACATATCGATGCCAATGCCATGTCCCAGACATGATCTTACATGGT
* * *
33076234 ATCATATATCGATGCCAATGTCATGTTCCAGACATGATCTTACATGGT
1 ATCACATATCGATGCCAATGCCATGTCCCAGACATGATCTTACATGGT
33076282 ATCACA
1 ATCACA
33076288 ATGCCATAGC
Statistics
Matches: 46, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
48 46 1.00
ACGTcount: A:0.29, C:0.22, G:0.17, T:0.32
Consensus pattern (48 bp):
ATCACATATCGATGCCAATGCCATGTCCCAGACATGATCTTACATGGT
Found at i:33076354 original size:37 final size:36
Alignment explanation
Indices: 33076271--33076355 Score: 116
Period size: 37 Copynumber: 2.3 Consensus size: 36
33076261 CCAGACATGA
* *
33076271 TCTTACATGGTATCACAATGCCATAGCTCAGCTATGG
1 TCTTACAT-GTATCACAATGCCATAGCCCAACTATGG
* *
33076308 TCTTACATGTCATTACGATGCCATAGCCCAACTATGG
1 TCTTACATGT-ATCACAATGCCATAGCCCAACTATGG
33076345 TCTTACATGTA
1 TCTTACATGTA
33076356 CTTGCATATA
Statistics
Matches: 43, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
36 3 0.07
37 40 0.93
ACGTcount: A:0.27, C:0.25, G:0.16, T:0.32
Consensus pattern (36 bp):
TCTTACATGTATCACAATGCCATAGCCCAACTATGG
Found at i:33078639 original size:28 final size:28
Alignment explanation
Indices: 33078608--33078664 Score: 105
Period size: 28 Copynumber: 2.0 Consensus size: 28
33078598 CATTAAATCT
*
33078608 CATGATTACCGGTTATTCATTCATAGTG
1 CATGATTACCAGTTATTCATTCATAGTG
33078636 CATGATTACCAGTTATTCATTCATAGTG
1 CATGATTACCAGTTATTCATTCATAGTG
33078664 C
1 C
33078665 TTACTCATTT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.26, C:0.19, G:0.16, T:0.39
Consensus pattern (28 bp):
CATGATTACCAGTTATTCATTCATAGTG
Found at i:33085680 original size:16 final size:16
Alignment explanation
Indices: 33085659--33085690 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
33085649 AAACCTAAGT
*
33085659 GAAATGTTTTCTTTTA
1 GAAATGATTTCTTTTA
33085675 GAAATGATTTCTTTTA
1 GAAATGATTTCTTTTA
33085691 TGATTTAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.28, C:0.06, G:0.12, T:0.53
Consensus pattern (16 bp):
GAAATGATTTCTTTTA
Found at i:33089303 original size:30 final size:31
Alignment explanation
Indices: 33089245--33089304 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 31
33089235 TTGAAATAAA
* **
33089245 GAACGAGCTGAAAGAAAGCTCAGTTGAGCTC
1 GAACAAGCTGAAAGAAAGCTCAAATGAGCTC
*
33089276 GAACAAGCTGAAA-CAAGCTCAAATGAGCT
1 GAACAAGCTGAAAGAAAGCTCAAATGAGCT
33089305 GAGTTGAGCT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
30 13 0.52
31 12 0.48
ACGTcount: A:0.40, C:0.20, G:0.25, T:0.15
Consensus pattern (31 bp):
GAACAAGCTGAAAGAAAGCTCAAATGAGCTC
Found at i:33093762 original size:3 final size:3
Alignment explanation
Indices: 33093747--33093782 Score: 54
Period size: 3 Copynumber: 12.0 Consensus size: 3
33093737 AAGAGGACAT
* *
33093747 TGA TGA CGA TGA TGA TGA TGG TGA TGA TGA TGA TGA
1 TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA
33093783 ATACGATGAG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.31, C:0.03, G:0.36, T:0.31
Consensus pattern (3 bp):
TGA
Found at i:33094370 original size:12 final size:12
Alignment explanation
Indices: 33094355--33094379 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
33094345 AATGATTTTT
33094355 AAAATTTATCAA
1 AAAATTTATCAA
33094367 AAAATTTATCAA
1 AAAATTTATCAA
33094379 A
1 A
33094380 TGGAGTGCAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.60, C:0.08, G:0.00, T:0.32
Consensus pattern (12 bp):
AAAATTTATCAA
Found at i:33104540 original size:20 final size:22
Alignment explanation
Indices: 33104502--33104544 Score: 72
Period size: 20 Copynumber: 2.0 Consensus size: 22
33104492 TATCATTTCA
33104502 TATAATAAATAACTTAAAATAT
1 TATAATAAATAACTTAAAATAT
33104524 TATAA-AAATAA-TTAAAATAT
1 TATAATAAATAACTTAAAATAT
33104544 T
1 T
33104545 TACAAAATTA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
20 10 0.48
21 6 0.29
22 5 0.24
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.37
Consensus pattern (22 bp):
TATAATAAATAACTTAAAATAT
Found at i:33104551 original size:20 final size:21
Alignment explanation
Indices: 33104502--33104552 Score: 70
Period size: 20 Copynumber: 2.4 Consensus size: 21
33104492 TATCATTTCA
33104502 TATAATAAATAACTTAAAATAT
1 TATAA-AAATAACTTAAAATAT
33104524 TATAAAAATAA-TTAAAATAT
1 TATAAAAATAACTTAAAATAT
33104544 T-TACAAAAT
1 TATA-AAAAT
33104553 TACAATCTTA
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
19 2 0.07
20 15 0.54
21 6 0.21
22 5 0.18
ACGTcount: A:0.61, C:0.04, G:0.00, T:0.35
Consensus pattern (21 bp):
TATAAAAATAACTTAAAATAT
Found at i:33104551 original size:21 final size:21
Alignment explanation
Indices: 33104508--33104551 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
33104498 TTCATATAAT
*
33104508 AAATAACTTAAAATATTATAA
1 AAATAACTTAAAATATTACAA
33104529 AAATAA-TTAAAATATTTACAA
1 AAATAACTTAAAATA-TTACAA
33104550 AA
1 AA
33104552 TTACAATCTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 8 0.38
21 13 0.62
ACGTcount: A:0.64, C:0.05, G:0.00, T:0.32
Consensus pattern (21 bp):
AAATAACTTAAAATATTACAA
Found at i:33108417 original size:14 final size:15
Alignment explanation
Indices: 33108381--33108422 Score: 52
Period size: 14 Copynumber: 2.9 Consensus size: 15
33108371 ACAGAGAAGT
*
33108381 ATTTCTTTATCAATT
1 ATTTCTTTATCAATA
*
33108396 CTTT-TTTAT-AATA
1 ATTTCTTTATCAATA
33108409 ATTTCTTTATCAAT
1 ATTTCTTTATCAAT
33108423 TTGTTGATCC
Statistics
Matches: 22, Mismatches: 3, Indels: 4
0.76 0.10 0.14
Matches are distributed among these distances:
13 6 0.27
14 10 0.45
15 6 0.27
ACGTcount: A:0.29, C:0.12, G:0.00, T:0.60
Consensus pattern (15 bp):
ATTTCTTTATCAATA
Found at i:33108852 original size:30 final size:30
Alignment explanation
Indices: 33108816--33108901 Score: 163
Period size: 30 Copynumber: 2.9 Consensus size: 30
33108806 CTTGTTTTCA
33108816 TATATTGTTGTGTATATAGTTAATTATTTT
1 TATATTGTTGTGTATATAGTTAATTATTTT
33108846 TATATTGTTGTGTATATAGTTAATTATTTT
1 TATATTGTTGTGTATATAGTTAATTATTTT
*
33108876 TATATTGTTGTATATATAGTTAATTA
1 TATATTGTTGTGTATATAGTTAATTA
33108902 GATTATTAAA
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
30 55 1.00
ACGTcount: A:0.29, C:0.00, G:0.13, T:0.58
Consensus pattern (30 bp):
TATATTGTTGTGTATATAGTTAATTATTTT
Found at i:33111548 original size:20 final size:20
Alignment explanation
Indices: 33111525--33111563 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
33111515 ATTTTTTTTA
* *
33111525 AAAAAATTCATTAAGAATCC
1 AAAAAATTAATTAAAAATCC
33111545 AAAAAATTAATTAAAAATC
1 AAAAAATTAATTAAAAATC
33111564 TAGAAAGGCC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.62, C:0.10, G:0.03, T:0.26
Consensus pattern (20 bp):
AAAAAATTAATTAAAAATCC
Found at i:33112195 original size:21 final size:21
Alignment explanation
Indices: 33112171--33112222 Score: 65
Period size: 21 Copynumber: 2.6 Consensus size: 21
33112161 AAAAAGTCAT
33112171 AAATCCTTAAAAAT-ATAAAAA
1 AAATCCTTAAAAATGA-AAAAA
*
33112192 AAATCATTAAAAATGAAAAAA
1 AAATCCTTAAAAATGAAAAAA
33112213 AAA-CC-TAAAA
1 AAATCCTTAAAA
33112223 TTTTCAAAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
19 5 0.18
20 1 0.04
21 21 0.75
22 1 0.04
ACGTcount: A:0.69, C:0.10, G:0.02, T:0.19
Consensus pattern (21 bp):
AAATCCTTAAAAATGAAAAAA
Found at i:33112255 original size:23 final size:23
Alignment explanation
Indices: 33112187--33112255 Score: 58
Period size: 23 Copynumber: 3.1 Consensus size: 23
33112177 TTAAAAATAT
*
33112187 AAAAAAAATCATTAAAA--A-TGA
1 AAAAAAAATCA-TAAAATTATTAA
*
33112208 AAAAAAAA-CCTAAAATT-TTCAA
1 AAAAAAAATCATAAAATTATT-AA
*
33112230 AAAAAAAATCATAAAATTATTTA
1 AAAAAAAATCATAAAATTATTAA
33112253 AAA
1 AAA
33112256 CTTTCATAAA
Statistics
Matches: 38, Mismatches: 4, Indels: 10
0.73 0.08 0.19
Matches are distributed among these distances:
19 5 0.13
20 1 0.03
21 9 0.24
22 9 0.24
23 12 0.32
24 2 0.05
ACGTcount: A:0.68, C:0.07, G:0.01, T:0.23
Consensus pattern (23 bp):
AAAAAAAATCATAAAATTATTAA
Found at i:33113471 original size:30 final size:29
Alignment explanation
Indices: 33113428--33113495 Score: 109
Period size: 30 Copynumber: 2.3 Consensus size: 29
33113418 CTAGCCTTTG
33113428 CCACCACCAACTCCACTAGCCACACTTGCT
1 CCACCACCAACTCCACTAGCCACAC-TGCT
* *
33113458 CCATCACCTACTCCACTAGCCACACTGCT
1 CCACCACCAACTCCACTAGCCACACTGCT
33113487 CCACCACCA
1 CCACCACCA
33113496 CTTGTACCTA
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
29 11 0.32
30 23 0.68
ACGTcount: A:0.26, C:0.51, G:0.06, T:0.16
Consensus pattern (29 bp):
CCACCACCAACTCCACTAGCCACACTGCT
Found at i:33113490 original size:17 final size:17
Alignment explanation
Indices: 33113438--33113490 Score: 53
Period size: 17 Copynumber: 3.4 Consensus size: 17
33113428 CCACCACCAA
33113438 CTCCACTAGCCACACTTG
1 CTCCACTAGCCACAC-TG
*
33113456 CTCCA-T---CAC-CTA
1 CTCCACTAGCCACACTG
33113468 CTCCACTAGCCACACTG
1 CTCCACTAGCCACACTG
33113485 CTCCAC
1 CTCCAC
33113491 CACCACTTGT
Statistics
Matches: 28, Mismatches: 2, Indels: 11
0.68 0.05 0.27
Matches are distributed among these distances:
12 6 0.21
13 2 0.07
14 3 0.11
16 3 0.11
17 9 0.32
18 5 0.18
ACGTcount: A:0.23, C:0.49, G:0.08, T:0.21
Consensus pattern (17 bp):
CTCCACTAGCCACACTG
Found at i:33114025 original size:24 final size:23
Alignment explanation
Indices: 33113977--33114028 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 23
33113967 TTTTTTTTGT
*
33113977 TATTATTATATTTCTTAATATTA
1 TATTATTATATTTCTTAATAATA
*
33114000 TATTATATATATATTCTT-TTAATA
1 TATTAT-TATAT-TTCTTAATAATA
33114024 TATTA
1 TATTA
33114029 GGTATATTCT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
23 6 0.24
24 14 0.56
25 5 0.20
ACGTcount: A:0.37, C:0.04, G:0.00, T:0.60
Consensus pattern (23 bp):
TATTATTATATTTCTTAATAATA
Found at i:33114082 original size:25 final size:26
Alignment explanation
Indices: 33114054--33114112 Score: 77
Period size: 25 Copynumber: 2.3 Consensus size: 26
33114044 CTATATTACG
*
33114054 TATATATATT-ATACTATTTTATGTA
1 TATATATATTAATACTATATTATGTA
* *
33114079 TATATCT-TTAATACTATATTATTTA
1 TATATATATTAATACTATATTATGTA
33114104 TATATATAT
1 TATATATAT
33114113 ATATTTTTCT
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
24 2 0.07
25 25 0.89
26 1 0.04
ACGTcount: A:0.37, C:0.05, G:0.02, T:0.56
Consensus pattern (26 bp):
TATATATATTAATACTATATTATGTA
Found at i:33114158 original size:22 final size:23
Alignment explanation
Indices: 33114101--33114194 Score: 73
Period size: 25 Copynumber: 3.9 Consensus size: 23
33114091 ACTATATTAT
* *
33114101 TTATATATATATATATTTTTCTACA
1 TTATAT-TATGTATATATTT-TACA
*
33114126 TGTTATCTTATGTATATATTTTA-A
1 --TTATATTATGTATATATTTTACA
*
33114150 TTATATTATGTATGTATTTTTTACA
1 TTATATTATGTA--TATATTTTACA
* *
33114175 CTATATTATGTACATATTTT
1 TTATATTATGTATATATTTT
33114195 TTATATCTAT
Statistics
Matches: 56, Mismatches: 8, Indels: 10
0.76 0.11 0.14
Matches are distributed among these distances:
22 11 0.20
23 6 0.11
24 9 0.16
25 14 0.25
26 11 0.20
27 5 0.09
ACGTcount: A:0.31, C:0.06, G:0.05, T:0.57
Consensus pattern (23 bp):
TTATATTATGTATATATTTTACA
Found at i:33114184 original size:25 final size:24
Alignment explanation
Indices: 33114134--33114197 Score: 74
Period size: 25 Copynumber: 2.5 Consensus size: 24
33114124 CATGTTATCT
*
33114134 TATGTATATATTTTAATTATATTATG
1 TATGTAT-T-TTTTAACTATATTATG
33114160 TATGTATTTTTTACACTATATTATG
1 TATGTATTTTTTA-ACTATATTATG
**
33114185 TACATATTTTTTA
1 TATGTATTTTTTA
33114198 TATCTATTTT
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
24 5 0.15
25 22 0.65
26 7 0.21
ACGTcount: A:0.31, C:0.05, G:0.06, T:0.58
Consensus pattern (24 bp):
TATGTATTTTTTAACTATATTATG
Found at i:33121276 original size:30 final size:30
Alignment explanation
Indices: 33121196--33121290 Score: 86
Period size: 30 Copynumber: 3.1 Consensus size: 30
33121186 CTTTTAATCT
* *
33121196 TTTTGAAAATTTTAATTAAATTCTCTTAAAA
1 TTTTAAAAATTTTAATTAAATTCAC-TAAAA
* * *
33121227 TTTCTAAAAATTCTCATTAACTTCAC-AAATA
1 TTT-TAAAAATTTTAATTAAATTCACTAAA-A
* *
33121258 TTTTAAAAATTTTAATTAAACTC-CTAAAT
1 TTTTAAAAATTTTAATTAAATTCACTAAAA
33121287 TTTT
1 TTTT
33121291 TTAAAAATCT
Statistics
Matches: 51, Mismatches: 10, Indels: 8
0.74 0.14 0.12
Matches are distributed among these distances:
29 5 0.10
30 22 0.43
31 7 0.14
32 17 0.33
ACGTcount: A:0.41, C:0.12, G:0.01, T:0.46
Consensus pattern (30 bp):
TTTTAAAAATTTTAATTAAATTCACTAAAA
Found at i:33127214 original size:22 final size:21
Alignment explanation
Indices: 33127182--33127228 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 21
33127172 ATACAGCTTT
33127182 TTTG-CAAAAATT-AGAGACAA
1 TTTGACAAAAATTGAGAGA-AA
33127202 CTTTGACAAAAATTGAGAGAAA
1 -TTTGACAAAAATTGAGAGAAA
33127224 TTTGA
1 TTTGA
33127229 GAGAATTTGG
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
21 9 0.38
22 10 0.42
23 5 0.21
ACGTcount: A:0.47, C:0.09, G:0.17, T:0.28
Consensus pattern (21 bp):
TTTGACAAAAATTGAGAGAAA
Found at i:33127256 original size:11 final size:11
Alignment explanation
Indices: 33127212--33127257 Score: 51
Period size: 11 Copynumber: 4.4 Consensus size: 11
33127202 CTTTGACAAA
*
33127212 AATTGAGAGA-
1 AATTTAGAGAG
33127222 AATTT-GAGAG
1 AATTTAGAGAG
* *
33127232 AATTTGGAAAG
1 AATTTAGAGAG
33127243 AATTTAGAGAG
1 AATTTAGAGAG
33127254 AATT
1 AATT
33127258 GTTGTGAGAG
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
9 4 0.13
10 9 0.30
11 17 0.57
ACGTcount: A:0.46, C:0.00, G:0.26, T:0.28
Consensus pattern (11 bp):
AATTTAGAGAG
Found at i:33129410 original size:13 final size:13
Alignment explanation
Indices: 33129384--33129457 Score: 67
Period size: 13 Copynumber: 5.7 Consensus size: 13
33129374 CACTTAAATC
*
33129384 TTTCTAAAGCACT
1 TTTCAAAAGCACT
* *
33129397 TCTCAAAAGTACT
1 TTTCAAAAGCACT
* ** *
33129410 TCTCAAAAATATT
1 TTTCAAAAGCACT
* *
33129423 TTTCCACAGCACT
1 TTTCAAAAGCACT
33129436 TTTCAAAAGCACT
1 TTTCAAAAGCACT
33129449 TTTCAAAAG
1 TTTCAAAAG
33129458 TAACGAAGAA
Statistics
Matches: 48, Mismatches: 13, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
13 48 1.00
ACGTcount: A:0.36, C:0.23, G:0.07, T:0.34
Consensus pattern (13 bp):
TTTCAAAAGCACT
Found at i:33146633 original size:45 final size:45
Alignment explanation
Indices: 33146582--33146672 Score: 182
Period size: 45 Copynumber: 2.0 Consensus size: 45
33146572 GGTACCACAA
33146582 TTTATATCAATTTAACATTATTATACTAACCTAATTAATTTTTCT
1 TTTATATCAATTTAACATTATTATACTAACCTAATTAATTTTTCT
33146627 TTTATATCAATTTAACATTATTATACTAACCTAATTAATTTTTCT
1 TTTATATCAATTTAACATTATTATACTAACCTAATTAATTTTTCT
33146672 T
1 T
33146673 AGGTTTAGTC
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 46 1.00
ACGTcount: A:0.35, C:0.13, G:0.00, T:0.52
Consensus pattern (45 bp):
TTTATATCAATTTAACATTATTATACTAACCTAATTAATTTTTCT
Found at i:33147279 original size:22 final size:22
Alignment explanation
Indices: 33147254--33147297 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
33147244 TAATCATTAC
* * *
33147254 TATTTAGTATCAGTCAATTATT
1 TATTCAGTAACAGTCAAGTATT
33147276 TATTCAGTAACAGTCAAGTATT
1 TATTCAGTAACAGTCAAGTATT
33147298 CGGTAACAGT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.34, C:0.11, G:0.11, T:0.43
Consensus pattern (22 bp):
TATTCAGTAACAGTCAAGTATT
Found at i:33147303 original size:18 final size:18
Alignment explanation
Indices: 33147276--33147320 Score: 63
Period size: 18 Copynumber: 2.5 Consensus size: 18
33147266 GTCAATTATT
33147276 TATTCAGTAACAGTCAAG
1 TATTCAGTAACAGTCAAG
* *
33147294 TATTCGGTAACAGTCAAT
1 TATTCAGTAACAGTCAAG
*
33147312 TCTTCAGTA
1 TATTCAGTA
33147321 CCTTTATTTG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.33, C:0.18, G:0.16, T:0.33
Consensus pattern (18 bp):
TATTCAGTAACAGTCAAG
Found at i:33148150 original size:22 final size:21
Alignment explanation
Indices: 33148125--33148189 Score: 58
Period size: 22 Copynumber: 3.0 Consensus size: 21
33148115 TCCCATGTTC
*
33148125 TTCTCTGTTTCGTTTGTTTTTT
1 TTCTCTATTTC-TTTGTTTTTT
* * *
33148147 TTCTCTTTTTCATTTCTTTTAT
1 TTCTCTATTTC-TTTGTTTTTT
*
33148169 TTCATTTATTTCTTTGTTTTT
1 TTC-TCTATTTCTTTGTTTTT
33148190 ATTATTAAAC
Statistics
Matches: 34, Mismatches: 8, Indels: 2
0.77 0.18 0.05
Matches are distributed among these distances:
22 28 0.82
23 6 0.18
ACGTcount: A:0.06, C:0.14, G:0.06, T:0.74
Consensus pattern (21 bp):
TTCTCTATTTCTTTGTTTTTT
Found at i:33168549 original size:73 final size:73
Alignment explanation
Indices: 33168456--33168601 Score: 283
Period size: 73 Copynumber: 2.0 Consensus size: 73
33168446 ATGGATCCTG
33168456 GTTTTTTAGCTTAAAAAGTTTACAAAGTATTCGGATTTTTATCTGAAAAATTATTTAATTTCACC
1 GTTTTTTAGCTTAAAAAGTTTACAAAGTATTCGGATTTTTATCTGAAAAATTATTTAATTTCACC
33168521 CTTCAAGT
66 CTTCAAGT
*
33168529 GTTTTTTAGCTTAAAGAGTTTACAAAGTATTCGGATTTTTATCTGAAAAATTATTTAATTTCACC
1 GTTTTTTAGCTTAAAAAGTTTACAAAGTATTCGGATTTTTATCTGAAAAATTATTTAATTTCACC
33168594 CTTCAAGT
66 CTTCAAGT
33168602 CAGCTCTTTA
Statistics
Matches: 72, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
73 72 1.00
ACGTcount: A:0.32, C:0.12, G:0.12, T:0.44
Consensus pattern (73 bp):
GTTTTTTAGCTTAAAAAGTTTACAAAGTATTCGGATTTTTATCTGAAAAATTATTTAATTTCACC
CTTCAAGT
Found at i:33168632 original size:73 final size:72
Alignment explanation
Indices: 33168465--33168619 Score: 220
Period size: 73 Copynumber: 2.1 Consensus size: 72
33168455 GGTTTTTTAG
*
33168465 CTTAAAAAGTTTACAAAGTATTCGGATTTTTATCTGAAAAATTATTTAATTTCACCCTTCAAGTG
1 CTTAAAGAGTTTAC-AAGTATTCGGATTTTTATCTGAAAAATTATTTAATTTCACCCTTCAAGTG
* * *
33168530 TTTTTTAG
65 TCTTTAAC
33168538 CTTAAAGAGTTTACAAAGTATTCGGATTTTTATCTGAAAAATTATTTAATTTCACCCTTCAAGTC
1 CTTAAAGAGTTTAC-AAGTATTCGGATTTTTATCTGAAAAATTATTTAATTTCACCCTTCAAGT-
33168603 AGCTCTTTAATC
64 -G-TCTTTAA-C
33168615 CTTAA
1 CTTAA
33168620 CTTTTACAGT
Statistics
Matches: 74, Mismatches: 4, Indels: 4
0.90 0.05 0.05
Matches are distributed among these distances:
73 63 0.85
75 1 0.01
76 5 0.07
77 5 0.07
ACGTcount: A:0.33, C:0.15, G:0.10, T:0.42
Consensus pattern (72 bp):
CTTAAAGAGTTTACAAGTATTCGGATTTTTATCTGAAAAATTATTTAATTTCACCCTTCAAGTGT
CTTTAAC
Found at i:33173763 original size:15 final size:15
Alignment explanation
Indices: 33173745--33173800 Score: 60
Period size: 15 Copynumber: 3.7 Consensus size: 15
33173735 AACCCTTATC
*
33173745 CTATTAGACACATCA
1 CTATCAGACACATCA
*
33173760 CTATCA-ATTACATCA
1 CTATCAGA-CACATCA
* *
33173775 TTAACAGACACATCA
1 CTATCAGACACATCA
33173790 CTATCAGACAC
1 CTATCAGACAC
33173801 CTCAAAATCA
Statistics
Matches: 32, Mismatches: 7, Indels: 4
0.74 0.16 0.09
Matches are distributed among these distances:
14 1 0.03
15 30 0.94
16 1 0.03
ACGTcount: A:0.41, C:0.29, G:0.05, T:0.25
Consensus pattern (15 bp):
CTATCAGACACATCA
Found at i:33173971 original size:15 final size:17
Alignment explanation
Indices: 33173945--33173983 Score: 55
Period size: 16 Copynumber: 2.4 Consensus size: 17
33173935 ATACAACATG
33173945 ACAAACAATAA-TCAAT
1 ACAAACAATAATTCAAT
*
33173961 ACAAA-AATAATTTAAT
1 ACAAACAATAATTCAAT
33173977 ACAAACA
1 ACAAACA
33173984 CAGTCATTTC
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
15 5 0.25
16 14 0.70
17 1 0.05
ACGTcount: A:0.64, C:0.15, G:0.00, T:0.21
Consensus pattern (17 bp):
ACAAACAATAATTCAAT
Found at i:33184751 original size:48 final size:48
Alignment explanation
Indices: 33184689--33185086 Score: 528
Period size: 48 Copynumber: 7.9 Consensus size: 48
33184679 TATATATGTG
* *
33184689 TGTGGTAAAGCCGAATGGCTAGTCTGAAATATATATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
*
33184737 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
33184785 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
33184833 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTA----G--------TGTGAAATATGTATGAGATATGTATA
*
33184893 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATG--TATA
*
33184943 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
* *
33184991 TGTGGTAAAGCCGAATGGCTGGTGTGAAATATGTAGGAGATATGTGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATA--TGTATA
* * * *
33185041 TTGTGGCCAAA-CCAAATGGCTGGTGTGAAATATGTAGGAGATATGT
1 -TGTGG-TAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGT
33185087 GTATATTGTG
Statistics
Matches: 322, Mismatches: 10, Indels: 35
0.88 0.03 0.10
Matches are distributed among these distances:
48 178 0.55
49 3 0.01
50 54 0.17
51 36 0.11
52 4 0.01
60 47 0.15
ACGTcount: A:0.34, C:0.07, G:0.28, T:0.31
Consensus pattern (48 bp):
TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
Found at i:33185016 original size:158 final size:156
Alignment explanation
Indices: 33184713--33185022 Score: 575
Period size: 158 Copynumber: 2.0 Consensus size: 156
33184703 ATGGCTAGTC
33184713 TGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAT
1 TGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAT
*
33184778 ATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAG
66 ATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAG
33184843 CCGAATGGCTAGTGTGAAATATAATG
131 CCGAATGGCTAGTGTGAAATATAATG
*
33184869 TGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAT
1 TGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAT
33184934 ATGTATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAA
66 ATG--TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAA
*
33184999 AGCCGAATGGCTGGTGTGAAATAT
129 AGCCGAATGGCTAGTGTGAAATAT
33185023 GTAGGAGATA
Statistics
Matches: 149, Mismatches: 3, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
156 67 0.45
158 82 0.55
ACGTcount: A:0.35, C:0.06, G:0.27, T:0.32
Consensus pattern (156 bp):
TGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAT
ATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAG
CCGAATGGCTAGTGTGAAATATAATG
Found at i:33185257 original size:37 final size:37
Alignment explanation
Indices: 33185207--33185309 Score: 179
Period size: 37 Copynumber: 2.8 Consensus size: 37
33185197 GGAAATATAT
33185207 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
33185244 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
33185281 TCTGGGTAAGACCCGATAACTACGTGTGG
1 TCCGGGTAAGACCCGATGACTACGTGTGG
33185310 GGACTATTCG
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 63 1.00
ACGTcount: A:0.23, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:33186512 original size:125 final size:127
Alignment explanation
Indices: 33186375--33186661 Score: 310
Period size: 127 Copynumber: 2.3 Consensus size: 127
33186365 ATTCGGCCCA
* * ** * *** * *
33186375 AACGATAAATCGAAACCCAATACGATTAGGCACGATTTATCAAA-TTTCCAAATACGAAACATTG
1 AACGAAAAATCGAAACCCAACACGATTAGGCACGACCTACCAAACCCCCCAAACACAAAACATTG
* * * *
33186439 CATCATTTTAA-TTTGAGAAAACATGGATGAAATTTCAAAAGGATATTTTGTATTTTAGTCG
66 CATCATTTTAATTTTAAAAAAACATGGATGAAATTTCAAAAGGATATTTCGCATTTTAGTCG
* * * * * * *
33186500 AATGGAAAATCGAAGCCCAGCACGATTGGGCACGACCTCCCAAACCCCCCAAACACAAAATATTG
1 AACGAAAAATCGAAACCCAACACGATTAGGCACGACCTACCAAACCCCCCAAACACAAAACATTG
* * *
33186565 CCTCGTTTTAATTTTAAAAAAACATGGATGAAATTTCAAAAGGATATTTCGCATTTTAGTTG
66 CATCATTTTAATTTTAAAAAAACATGGATGAAATTTCAAAAGGATATTTCGCATTTTAGTCG
* *
33186627 AACGAAAAATCGAAACCTAGCACGA-TAGGGCACGA
1 AACGAAAAATCGAAACCCAACACGATTA-GGCACGA
33186662 TTCCTCGAAC
Statistics
Matches: 130, Mismatches: 29, Indels: 4
0.80 0.18 0.02
Matches are distributed among these distances:
125 33 0.25
126 24 0.18
127 73 0.56
ACGTcount: A:0.39, C:0.19, G:0.16, T:0.26
Consensus pattern (127 bp):
AACGAAAAATCGAAACCCAACACGATTAGGCACGACCTACCAAACCCCCCAAACACAAAACATTG
CATCATTTTAATTTTAAAAAAACATGGATGAAATTTCAAAAGGATATTTCGCATTTTAGTCG
Found at i:33186837 original size:21 final size:23
Alignment explanation
Indices: 33186790--33186843 Score: 60
Period size: 23 Copynumber: 2.5 Consensus size: 23
33186780 CATTCAAGAT
**
33186790 AAAATAATATATAAAACTCTTTA
1 AAAATAATATATAAAACTAATTA
*
33186813 AAAATAATATAT-AAAC-AATTC
1 AAAATAATATATAAAACTAATTA
33186834 AAAAT-ATATA
1 AAAATAATATA
33186844 ATGTGTAAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
20 5 0.18
21 7 0.25
22 4 0.14
23 12 0.43
ACGTcount: A:0.61, C:0.07, G:0.00, T:0.31
Consensus pattern (23 bp):
AAAATAATATATAAAACTAATTA
Found at i:33187084 original size:17 final size:15
Alignment explanation
Indices: 33187044--33187089 Score: 65
Period size: 15 Copynumber: 2.9 Consensus size: 15
33187034 ATATAAATAG
*
33187044 AAATAAAAATATAAT
1 AAATAGAAATATAAT
33187059 AAATAGAAATATAAT
1 AAATAGAAATATAAT
33187074 AATAGTAGAAATATAA
1 AA-A-TAGAAATATAA
33187090 ATAGATAAAT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
15 16 0.57
16 1 0.04
17 11 0.39
ACGTcount: A:0.67, C:0.00, G:0.07, T:0.26
Consensus pattern (15 bp):
AAATAGAAATATAAT
Found at i:33187099 original size:14 final size:13
Alignment explanation
Indices: 33187059--33187160 Score: 59
Period size: 14 Copynumber: 7.2 Consensus size: 13
33187049 AAAATATAAT
33187059 AAATAGA-AATATA
1 AAATAGATAA-ATA
*
33187072 ATAATAGTAGAAATA
1 A-AATAG-ATAAATA
33187087 TAAATAGATAAATA
1 -AAATAGATAAATA
33187101 AAATTAGATAAATA
1 AAA-TAGATAAATA
33187115 ATAATAGTATTAGAATA
1 A-AATAG-A-TA-AATA
33187132 ACAA-A-ATAAATA
1 A-AATAGATAAATA
33187144 TAAATAGA-AACATA
1 -AAATAGATAA-ATA
33187158 AAA
1 AAA
33187161 ATAATAGTAA
Statistics
Matches: 74, Mismatches: 2, Indels: 26
0.73 0.02 0.25
Matches are distributed among these distances:
12 6 0.08
13 13 0.18
14 30 0.41
15 12 0.16
16 6 0.08
17 7 0.09
ACGTcount: A:0.65, C:0.02, G:0.08, T:0.25
Consensus pattern (13 bp):
AAATAGATAAATA
Found at i:33187118 original size:29 final size:30
Alignment explanation
Indices: 33187054--33187175 Score: 76
Period size: 29 Copynumber: 4.2 Consensus size: 30
33187044 AAATAAAAAT
33187054 ATAATAAATAGAAATATAATAATAGTAGAA
1 ATAATAAATAGAAATATAATAATAGTAGAA
*
33187084 AT-ATAAATAGATAA-ATAA-AATTAG-ATAA
1 ATAATAAATAGA-AATATAATAA-TAGTAGAA
* * * * ** *
33187112 ATAAT-AATAGTATTAGAATAACAAAATAA
1 ATAATAAATAGAAATATAATAATAGTAGAA
* * * *
33187141 AT-ATAAATAGAAACATAAAAATAATAGTA
1 ATAATAAATAGAAATATAATAATAGTAGAA
33187170 ATAATA
1 ATAATA
33187176 TATTAAATTA
Statistics
Matches: 69, Mismatches: 15, Indels: 16
0.69 0.15 0.16
Matches are distributed among these distances:
27 1 0.01
28 18 0.26
29 43 0.62
30 7 0.10
ACGTcount: A:0.64, C:0.02, G:0.07, T:0.27
Consensus pattern (30 bp):
ATAATAAATAGAAATATAATAATAGTAGAA
Found at i:33187172 original size:23 final size:23
Alignment explanation
Indices: 33187108--33187172 Score: 55
Period size: 23 Copynumber: 2.8 Consensus size: 23
33187098 ATAAAATTAG
*
33187108 ATAAATAATAATAGTATTAGAATA
1 ATAAA-AATAATAGTAATAGAATA
*
33187132 A-CAAAATAAATA-TAAATAGAA-A
1 ATAAAAAT-AATAGT-AATAGAATA
33187154 CATAAAAATAATAGTAATA
1 -ATAAAAATAATAGTAATA
33187173 ATATATTAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 11
0.70 0.06 0.23
Matches are distributed among these distances:
22 5 0.15
23 21 0.64
24 7 0.21
ACGTcount: A:0.65, C:0.03, G:0.06, T:0.26
Consensus pattern (23 bp):
ATAAAAATAATAGTAATAGAATA
Found at i:33195819 original size:16 final size:16
Alignment explanation
Indices: 33195798--33195829 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
33195788 GCCTGGATTT
*
33195798 GATTTAAAAGTTTTAA
1 GATTTAAAAGTCTTAA
33195814 GATTTAAAAGTCTTAA
1 GATTTAAAAGTCTTAA
33195830 TATCTTCAAG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.44, C:0.03, G:0.12, T:0.41
Consensus pattern (16 bp):
GATTTAAAAGTCTTAA
Found at i:33201493 original size:21 final size:21
Alignment explanation
Indices: 33201469--33201521 Score: 88
Period size: 21 Copynumber: 2.5 Consensus size: 21
33201459 CATTGTTTCT
*
33201469 AATCTCACCGCTACAGTACCC
1 AATCTCACCGCTACAGTAACC
*
33201490 AATCTCACCGCTACAGTAACT
1 AATCTCACCGCTACAGTAACC
33201511 AATCTCACCGC
1 AATCTCACCGC
33201522 CACCGCTGTT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.30, C:0.40, G:0.09, T:0.21
Consensus pattern (21 bp):
AATCTCACCGCTACAGTAACC
Found at i:33201966 original size:17 final size:16
Alignment explanation
Indices: 33201903--33201967 Score: 58
Period size: 17 Copynumber: 3.8 Consensus size: 16
33201893 TATTAAATGA
33201903 TTTTTATAATTTTTATGCT
1 TTTTTA-AATTTTTAT--T
*
33201922 TTTTTAATAATTTTATT
1 TTTTTAA-ATTTTTATT
**
33201939 TTTTTGGATTTTTATAT
1 TTTTTAAATTTTTAT-T
33201956 TTTTTAAATTTT
1 TTTTTAAATTTT
33201968 AAAAATTTAA
Statistics
Matches: 38, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
16 7 0.18
17 17 0.45
18 1 0.03
19 13 0.34
ACGTcount: A:0.23, C:0.02, G:0.05, T:0.71
Consensus pattern (16 bp):
TTTTTAAATTTTTATT
Found at i:33202723 original size:19 final size:19
Alignment explanation
Indices: 33202696--33202766 Score: 70
Period size: 19 Copynumber: 3.5 Consensus size: 19
33202686 GATTATGTTA
33202696 GTATATTAATCAAAGTAAT
1 GTATATTAATCAAAGTAAT
* *
33202715 GTATTTTAATATTCAAAGTACAA
1 GTATATT-A-A-TCAAAGTA-AT
*
33202738 ATATATTAATCAAAGTAAT
1 GTATATTAATCAAAGTAAT
*
33202757 GTATTTTAAT
1 GTATATTAAT
33202767 ATTCAAAGTA
Statistics
Matches: 41, Mismatches: 7, Indels: 8
0.73 0.12 0.14
Matches are distributed among these distances:
19 15 0.37
20 9 0.22
21 2 0.05
22 9 0.22
23 6 0.15
ACGTcount: A:0.45, C:0.06, G:0.08, T:0.41
Consensus pattern (19 bp):
GTATATTAATCAAAGTAAT
Found at i:33202726 original size:25 final size:25
Alignment explanation
Indices: 33202698--33202769 Score: 63
Period size: 20 Copynumber: 3.2 Consensus size: 25
33202688 TTATGTTAGT
33202698 ATATTAATCAAAGTAATGTATTTTA
1 ATATTAATCAAAGTAATGTATTTTA
*
33202723 ATA-T--TCAAAGTACA---A--AT-
1 ATATTAATCAAAGTA-ATGTATTTTA
33202740 ATATTAATCAAAGTAATGTATTTTA
1 ATATTAATCAAAGTAATGTATTTTA
33202765 ATATT
1 ATATT
33202770 CAAAGTACAA
Statistics
Matches: 35, Mismatches: 2, Indels: 20
0.61 0.04 0.35
Matches are distributed among these distances:
17 3 0.09
18 2 0.06
19 1 0.03
20 9 0.26
22 9 0.26
23 1 0.03
24 2 0.06
25 8 0.23
ACGTcount: A:0.46, C:0.06, G:0.07, T:0.42
Consensus pattern (25 bp):
ATATTAATCAAAGTAATGTATTTTA
Found at i:33202733 original size:22 final size:22
Alignment explanation
Indices: 33202705--33202776 Score: 87
Period size: 22 Copynumber: 3.4 Consensus size: 22
33202695 AGTATATTAA
33202705 TCAAAGTAATGTATTTTAATAT
1 TCAAAGTAATGTATTTTAATAT
** *
33202727 TCAAAGTACAAATATATT-A-A-
1 TCAAAGTA-ATGTATTTTAATAT
33202747 TCAAAGTAATGTATTTTAATAT
1 TCAAAGTAATGTATTTTAATAT
33202769 TCAAAGTA
1 TCAAAGTA
33202777 CAAAATAAGC
Statistics
Matches: 40, Mismatches: 6, Indels: 8
0.74 0.11 0.15
Matches are distributed among these distances:
19 6 0.15
20 9 0.22
21 2 0.05
22 17 0.43
23 6 0.15
ACGTcount: A:0.46, C:0.07, G:0.08, T:0.39
Consensus pattern (22 bp):
TCAAAGTAATGTATTTTAATAT
Done.