Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100714657
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 3970000 characters in sequence are not A, C, G, or T
File 106 of 318
Found at i:34215956 original size:15 final size:14
Alignment explanation
Indices: 34215911--34215977 Score: 98
Period size: 14 Copynumber: 4.7 Consensus size: 14
34215901 GTTTGCAGGT
* *
34215911 AAAATGTTTTCCGG
1 AAAATGATTTCTGG
34215925 AAAATGATTTCTGG
1 AAAATGATTTCTGG
*
34215939 AAAATAATTTCTTGG
1 AAAATGATTTC-TGG
34215954 AAAATGATTTCTGG
1 AAAATGATTTCTGG
34215968 AAAATGATTT
1 AAAATGATTT
34215978 ACTTTTCTGG
Statistics
Matches: 48, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
14 35 0.73
15 13 0.27
ACGTcount: A:0.37, C:0.07, G:0.18, T:0.37
Consensus pattern (14 bp):
AAAATGATTTCTGG
Found at i:34216445 original size:46 final size:46
Alignment explanation
Indices: 34216374--34216499 Score: 198
Period size: 46 Copynumber: 2.7 Consensus size: 46
34216364 AATTAATAAT
* * * *
34216374 ATTATCCAAATACATAATTAGTATTACACCACATGATAACAACAAC
1 ATTATCCAAGTGCATAACTAATATTACACCACATGATAACAACAAC
*
34216420 ATTATCCAAGTGCATAACTAATATTACACCACATGATAACAACAAT
1 ATTATCCAAGTGCATAACTAATATTACACCACATGATAACAACAAC
*
34216466 ATTGTCCAAGTGCATAACTAATATTACACCACAT
1 ATTATCCAAGTGCATAACTAATATTACACCACAT
34216500 TAAAAGTATC
Statistics
Matches: 74, Mismatches: 6, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
46 74 1.00
ACGTcount: A:0.44, C:0.22, G:0.06, T:0.27
Consensus pattern (46 bp):
ATTATCCAAGTGCATAACTAATATTACACCACATGATAACAACAAC
Found at i:34216482 original size:24 final size:24
Alignment explanation
Indices: 34216409--34216483 Score: 68
Period size: 24 Copynumber: 3.2 Consensus size: 24
34216399 ACACCACATG
*
34216409 ATAACAACAACATTATCCAAGTGC
1 ATAACAACAATATTATCCAAGTGC
* *
34216433 ATAAC--TAATATTACACCACA-TG-
1 ATAACAACAATATTA-TCCA-AGTGC
*
34216455 ATAACAACAATATTGTCCAAGTGC
1 ATAACAACAATATTATCCAAGTGC
34216479 ATAAC
1 ATAAC
34216484 TAATATTACA
Statistics
Matches: 39, Mismatches: 6, Indels: 12
0.68 0.11 0.21
Matches are distributed among these distances:
22 12 0.31
23 10 0.26
24 17 0.44
ACGTcount: A:0.45, C:0.23, G:0.08, T:0.24
Consensus pattern (24 bp):
ATAACAACAATATTATCCAAGTGC
Found at i:34217494 original size:32 final size:32
Alignment explanation
Indices: 34217448--34217508 Score: 104
Period size: 32 Copynumber: 1.9 Consensus size: 32
34217438 TGCCAATCAT
34217448 TTCAATATCCAACAAGCTTAAAACATAATAAA
1 TTCAATATCCAACAAGCTTAAAACATAATAAA
* *
34217480 TTCAATATCTAACAAGCTTGAAACATAAT
1 TTCAATATCCAACAAGCTTAAAACATAAT
34217509 CAATATCTAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
32 27 1.00
ACGTcount: A:0.49, C:0.18, G:0.05, T:0.28
Consensus pattern (32 bp):
TTCAATATCCAACAAGCTTAAAACATAATAAA
Found at i:34217515 original size:27 final size:30
Alignment explanation
Indices: 34217448--34217521 Score: 91
Period size: 32 Copynumber: 2.5 Consensus size: 30
34217438 TGCCAATCAT
*
34217448 TTCAATATCCAACAAGCTTAAAACATAATAAA
1 TTCAATATCTAACAAGCTTAAAAC--AATAAA
*
34217480 TTCAATATCTAACAAGCTTGAAAC-AT-AA
1 TTCAATATCTAACAAGCTTAAAACAATAAA
34217508 -TCAATATCTAACAA
1 TTCAATATCTAACAA
34217522 AATCAAGACA
Statistics
Matches: 40, Mismatches: 2, Indels: 5
0.85 0.04 0.11
Matches are distributed among these distances:
27 14 0.35
28 2 0.05
29 2 0.05
32 22 0.55
ACGTcount: A:0.50, C:0.19, G:0.04, T:0.27
Consensus pattern (30 bp):
TTCAATATCTAACAAGCTTAAAACAATAAA
Found at i:34222302 original size:31 final size:31
Alignment explanation
Indices: 34222264--34222403 Score: 194
Period size: 31 Copynumber: 4.5 Consensus size: 31
34222254 TTGTAGCCAA
* *
34222264 AGCTACCACTATTCACTGAACAGGTAG-TCGG
1 AGCTACCACTTTTCACTGATCAGGTAGCT-GG
*
34222295 AGCTACCATTTTTCACTGATCAGGTAGCTGG
1 AGCTACCACTTTTCACTGATCAGGTAGCTGG
* *
34222326 AGCTACCACTTTTCACTCATCAGGTAGC-AG
1 AGCTACCACTTTTCACTGATCAGGTAGCTGG
* *
34222356 AACTACCACTTTTCACTGATCAGGTAGCTGA
1 AGCTACCACTTTTCACTGATCAGGTAGCTGG
34222387 AGCTACCACTTTTCACT
1 AGCTACCACTTTTCACT
34222404 TGTCATTTGT
Statistics
Matches: 96, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
30 27 0.28
31 68 0.71
32 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.18, T:0.29
Consensus pattern (31 bp):
AGCTACCACTTTTCACTGATCAGGTAGCTGG
Found at i:34222384 original size:61 final size:62
Alignment explanation
Indices: 34222263--34222403 Score: 212
Period size: 61 Copynumber: 2.3 Consensus size: 62
34222253 CTTGTAGCCA
* * * * *
34222263 AAGCTACCACTATTCACTGAACAGGTAGTCGGAGCTACCATTTTTCACTGATCAGGTAGCTG
1 AAGCTACCACTTTTCACTCAACAGGTAGTCAGAACTACCACTTTTCACTGATCAGGTAGCTG
* *
34222325 GAGCTACCACTTTTCACTCATCAGGTAG-CAGAACTACCACTTTTCACTGATCAGGTAGCTG
1 AAGCTACCACTTTTCACTCAACAGGTAGTCAGAACTACCACTTTTCACTGATCAGGTAGCTG
34222386 AAGCTACCACTTTTCACT
1 AAGCTACCACTTTTCACT
34222404 TGTCATTTGT
Statistics
Matches: 71, Mismatches: 8, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
61 47 0.66
62 24 0.34
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.28
Consensus pattern (62 bp):
AAGCTACCACTTTTCACTCAACAGGTAGTCAGAACTACCACTTTTCACTGATCAGGTAGCTG
Found at i:34222485 original size:50 final size:51
Alignment explanation
Indices: 34222379--34222506 Score: 177
Period size: 50 Copynumber: 2.5 Consensus size: 51
34222369 CACTGATCAG
* * * * * *
34222379 GTAGCTGAAGCTACCACTTTTCACTTGTCATTTGTCCTTAATTAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTGCCACTTGTCCTTAATCAGATAAGT
* *
34222430 GTAGCCGAAGCTATCACTTATCACTT-CCACTTGTCTTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTGCCACTTGTCCTTAATCAGATAAGT
34222480 GTAGCCGAAGCTATCACTTATCACTTG
1 GTAGCCGAAGCTATCACTTATCACTTG
34222507 TTGCCATGGT
Statistics
Matches: 68, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
50 45 0.66
51 23 0.34
ACGTcount: A:0.26, C:0.23, G:0.16, T:0.35
Consensus pattern (51 bp):
GTAGCCGAAGCTATCACTTATCACTTGCCACTTGTCCTTAATCAGATAAGT
Found at i:34226457 original size:42 final size:42
Alignment explanation
Indices: 34226409--34226584 Score: 176
Period size: 42 Copynumber: 4.0 Consensus size: 42
34226399 CTTCATTTTC
** * *
34226409 TCGATGCCATAGTTCAACTATGGTCTTACACATCTTCACATAA
1 TCGATGCCATAGCACAGCTATGGTCTTACACATATTCACAT-A
* *
34226452 T-GATGCCATAGCCCAGCTATGGTCTTACACATATTCATATA
1 TCGATGCCATAGCACAGCTATGGTCTTACACATATTCACATA
*
34226493 TCGATGCCATAGCACAGCTATAGTCTTACACGTAATCACATATCACATA
1 TCGATGCCATAGCACAGCTATGGTCTTACAC---AT---AT-TCACATA
* * *
34226542 TCGATGCCATAGCCCAGCTATGGTCTTACA-AGAATCACATA
1 TCGATGCCATAGCACAGCTATGGTCTTACACATATTCACATA
34226583 TC
1 TC
34226585 TCACTGATGC
Statistics
Matches: 113, Mismatches: 12, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
41 11 0.10
42 62 0.55
43 1 0.01
45 3 0.03
48 2 0.02
49 34 0.30
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.29
Consensus pattern (42 bp):
TCGATGCCATAGCACAGCTATGGTCTTACACATATTCACATA
Found at i:34226552 original size:49 final size:48
Alignment explanation
Indices: 34226479--34226584 Score: 158
Period size: 49 Copynumber: 2.2 Consensus size: 48
34226469 TATGGTCTTA
* *
34226479 CACATATTCATATATCGATGCCATAGCACAGCTATAGTCTTACACGTAAT
1 CACATA-TCACATATCGATGCCATAGCACAGCTATAGTCTTACAAG-AAT
* *
34226529 CACATATCACATATCGATGCCATAGCCCAGCTATGGTCTTACAAGAAT
1 CACATATCACATATCGATGCCATAGCACAGCTATAGTCTTACAAGAAT
34226577 CACATATC
1 CACATATC
34226585 TCACTGATGC
Statistics
Matches: 52, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
48 11 0.21
49 35 0.67
50 6 0.12
ACGTcount: A:0.34, C:0.26, G:0.12, T:0.27
Consensus pattern (48 bp):
CACATATCACATATCGATGCCATAGCACAGCTATAGTCTTACAAGAAT
Found at i:34226610 original size:46 final size:47
Alignment explanation
Indices: 34226494--34226662 Score: 171
Period size: 47 Copynumber: 3.6 Consensus size: 47
34226484 ATTCATATAT
* * * * * *
34226494 CGATGCCATAGCACAGCTATAGTCTTACAC-GTAATCACATATCACATAT
1 CGATGCCATATCCCAGATATGGTCTTACACAG-AAGCACATATCAC--AC
* * * *
34226543 CGATGCCATAGCCCAGCTATGGTCTTACA-AGAATCACATATCTCAC
1 CGATGCCATATCCCAGATATGGTCTTACACAGAAGCACATATCACAC
* * * *
34226589 TGATGCCATATCCCAGATATGGTCTTATACAGTAGCATATATCACAC
1 CGATGCCATATCCCAGATATGGTCTTACACAGAAGCACATATCACAC
34226636 CGATGCCATATCCCAGATATGGTCTTA
1 CGATGCCATATCCCAGATATGGTCTTA
34226663 TACGAAAATC
Statistics
Matches: 105, Mismatches: 13, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
46 26 0.25
47 39 0.37
48 12 0.11
49 28 0.27
ACGTcount: A:0.31, C:0.27, G:0.15, T:0.27
Consensus pattern (47 bp):
CGATGCCATATCCCAGATATGGTCTTACACAGAAGCACATATCACAC
Found at i:34226719 original size:31 final size:31
Alignment explanation
Indices: 34226684--34226832 Score: 181
Period size: 31 Copynumber: 4.8 Consensus size: 31
34226674 CTTGTCACTT
* * *
34226684 GTAGCTGAAGCTACCACTATTCACTGAACAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* *
34226715 GTAGCCGGAGCTACCATTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* *
34226746 GTAGCCGGAGCTACGACTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* * *
34226777 GTAACAGAAGCTACCACTTTTCACTGATTAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* * *
34226808 GTAGCCAAAACTATCACTTTTCACT
1 GTAGCCGAAGCTACCACTTTTCACT
34226833 TGTCATTTGT
Statistics
Matches: 101, Mismatches: 17, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 101 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.28
Consensus pattern (31 bp):
GTAGCCGAAGCTACCACTTTTCACTGATCAG
Found at i:34226908 original size:50 final size:51
Alignment explanation
Indices: 34226808--34226936 Score: 188
Period size: 50 Copynumber: 2.5 Consensus size: 51
34226798 CACTGATTAG
* * * *
34226808 GTAGCCAAAACTATCACTTTTCACTTGTCATTTGTCCTTGATCAAATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTGTCACTTGTCCTTGATCAAATAAGT
* * *
34226859 GTAGCCGAAGCTGTCACTTATCACTT-TCACTTGTCTTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTGTCACTTGTCCTTGATCAAATAAGT
34226909 GTAGCCGAAGCTATCACTTATCACTTGT
1 GTAGCCGAAGCTATCACTTATCACTTGT
34226937 TGCCATGGTC
Statistics
Matches: 69, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
50 46 0.67
51 23 0.33
ACGTcount: A:0.26, C:0.22, G:0.16, T:0.36
Consensus pattern (51 bp):
GTAGCCGAAGCTATCACTTATCACTTGTCACTTGTCCTTGATCAAATAAGT
Found at i:34231213 original size:13 final size:13
Alignment explanation
Indices: 34231195--34231223 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
34231185 AGGTGTAACT
34231195 ACATGGGCTGCTC
1 ACATGGGCTGCTC
34231208 ACATGGGCTGCTC
1 ACATGGGCTGCTC
34231221 ACA
1 ACA
34231224 CAAGCTGTCA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.21, C:0.31, G:0.28, T:0.21
Consensus pattern (13 bp):
ACATGGGCTGCTC
Found at i:34231778 original size:18 final size:17
Alignment explanation
Indices: 34231755--34231788 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
34231745 TAACTTGTTT
*
34231755 ATCAATCACATTATTCAA
1 ATCAATC-CATAATTCAA
34231773 ATCAATCCATAATTCA
1 ATCAATCCATAATTCA
34231789 TGCTTTGGTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.44, C:0.24, G:0.00, T:0.32
Consensus pattern (17 bp):
ATCAATCCATAATTCAA
Found at i:34244818 original size:55 final size:55
Alignment explanation
Indices: 34244750--34244857 Score: 162
Period size: 55 Copynumber: 2.0 Consensus size: 55
34244740 ACAGGTTCGA
* *
34244750 CCACGGGTGTTCCACACGGGCATGTCACACGCCCGTGTTGTTTTGGCAGGCTCAT
1 CCACGGGTCTTCCACACGGGCATGTCACACGCCCGTGTTGTTCTGGCAGGCTCAT
* * **
34244805 CCACGGTTCTTCCACACGGGCGTGTTGCACGCCCGTGTTGTTCTGGCAGGCTC
1 CCACGGGTCTTCCACACGGGCATGTCACACGCCCGTGTTGTTCTGGCAGGCTC
34244858 GACCATGGCC
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
55 47 1.00
ACGTcount: A:0.12, C:0.32, G:0.30, T:0.26
Consensus pattern (55 bp):
CCACGGGTCTTCCACACGGGCATGTCACACGCCCGTGTTGTTCTGGCAGGCTCAT
Found at i:34254663 original size:24 final size:24
Alignment explanation
Indices: 34254631--34254681 Score: 84
Period size: 24 Copynumber: 2.1 Consensus size: 24
34254621 ATTAAGCAGA
**
34254631 GTTGATCGAATGCCTAGAAATAGG
1 GTTGATCGAACACCTAGAAATAGG
34254655 GTTGATCGAACACCTAGAAATAGG
1 GTTGATCGAACACCTAGAAATAGG
34254679 GTT
1 GTT
34254682 ACGAGATTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.33, C:0.14, G:0.27, T:0.25
Consensus pattern (24 bp):
GTTGATCGAACACCTAGAAATAGG
Found at i:34261307 original size:45 final size:45
Alignment explanation
Indices: 34261243--34261333 Score: 164
Period size: 45 Copynumber: 2.0 Consensus size: 45
34261233 ATCCGCTACC
* *
34261243 TCCTGCGATTGTTGTAAATTAGAATCCTGCTCCACGCACTATGTA
1 TCCTGCGATTGCTGTAAATTAGAATCCTACTCCACGCACTATGTA
34261288 TCCTGCGATTGCTGTAAATTAGAATCCTACTCCACGCACTATGTA
1 TCCTGCGATTGCTGTAAATTAGAATCCTACTCCACGCACTATGTA
34261333 T
1 T
34261334 GGTTATGCTA
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
45 44 1.00
ACGTcount: A:0.25, C:0.25, G:0.16, T:0.33
Consensus pattern (45 bp):
TCCTGCGATTGCTGTAAATTAGAATCCTACTCCACGCACTATGTA
Found at i:34266045 original size:22 final size:23
Alignment explanation
Indices: 34266023--34266074 Score: 63
Period size: 23 Copynumber: 2.3 Consensus size: 23
34266013 ATGTTTTTAC
34266023 TTTTATTCTACTTTAAGACTACT
1 TTTTATTCTACTTTAAGACTACT
* *
34266046 TTTTATTTTTCTTTAAG-CTTA-T
1 TTTTATTCTACTTTAAGAC-TACT
34266068 TTTTATT
1 TTTTATT
34266075 AGGTTTTATA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
22 9 0.35
23 17 0.65
ACGTcount: A:0.21, C:0.12, G:0.04, T:0.63
Consensus pattern (23 bp):
TTTTATTCTACTTTAAGACTACT
Found at i:34272112 original size:686 final size:685
Alignment explanation
Indices: 34270855--34272115 Score: 1760
Period size: 686 Copynumber: 1.8 Consensus size: 685
34270845 TATAGCTTTA
* *
34270855 GCAAGACCGGATTATCAAACCCATAGGAACTAAAAGTACTAGTATCAACTTTATTTTTATTATCA
1 GCAAGACCGGATTATCAAACCCATAGGAACAAAAAGTACTAGTATCAACTATATTTTTATTATCA
* * * *
34270920 AGCCTAAAAAATAAAAGGGTTTTGTTTAGCTAACTAATTAATTAAACTAAGAAATCACAGAAAAG
66 AGCCTAAAAAATAAAAGGGTTGTGTTTAACTAACTAATTAATTAAACGAAGAAAGCACAGAAAAG
*
34270985 AAATTTGGGGAAAATACTTTTTGGAAAACTCGATTGATTAAGACAATACCTAAGGAAAAATCCAC
131 AAATTTGGGGAAAATACTTTTGGGAAAACTCGATTGATTAAGACAATACCTAAGGAAAAATCCAC
* * *
34271050 CTAGACTTTACTTGTTATTTGACTCTAAATCGGATGATTTATTCATTCAACTTGTTCCGTAAGAT
196 CTAGACTGTACTTGTTATTTGACTCCAAATCGGACGATTTATTCATTCAACTTGTTCCGTAAGAT
* * * * **
34271115 CCCTAAGTTATATTATTATCTCTCTCGAGACTAACAACGTCTAACCTTAGTTTGAATAATTGAAA
261 CCCTAAGTTATATTATTATCCCTCTCAAGACTAACAACGTCTAACCCTAGATTGAATAACCGAAA
* * * * * *
34271180 TATCTTTCTAATTAATGCTCTAGGGTTGCATTAACTCGATCTATGTATCCTCTTATTAGGTTTCA
326 TATCTTTCCAATTAACGATCTAGGGTTGCATTAACTCGATCTATGGATCCCCTTATTACGTTTCA
* *
34271245 CCCTAATCCGGCAAAATCTTGTCACCCTATCTCTAGGCGCGCAACTAACTCCGCTTAATTATGAC
391 CCCTAATCCGGCAAAATCTTGTCACCCTATCTCTAGGCACGCAACTAACTCCGCTTAAATATGAC
* *
34271310 AAATTTACTCTTAGACAGGGTCTATTCCTCCTCTAAATAAGAGCTTTAACTTGAATCAATATCCT
456 AAATGTACTCTTAGACAGGGTCTATTCCTCCTCTAAATAAGAGCTGT-ACTTGAATCAATATCCT
*
34271375 GGAATATCAAAACAAGAATTAAGAACACATAATTAATAACAAGTCAAATATTTATGATCGCGTGA
520 GGAATATCAAAACAAGAATTAAGAACACATAATTAAGAACAAGTCAAATATTTATGATCGCGTGA
34271440 TTCGTAACAAGTAATAAATATTTATAATGAAGATCAAACCTAGACTAACTATTATCACGATGAAA
585 TTCGTAACAAGTAATAAATATTTATAATGAAGATCAAACCTAGACTAACTATTATCACGATGAAA
34271505 AGGCATGCGCACCTATCAAATAATAGTACAGTAATG
650 AGGCATGCGCACCTATCAAATAATAGTACAGTAATG
** *
34271541 GCAAGACCGGGA-TATCGTACCCA-AGGGAACAAAAAGTACTAGTAAT-AACTATCTTTTTATTA
1 GCAAGACC-GGATTATCAAACCCATA-GGAACAAAAAGTACTAGT-ATCAACTATATTTTTATTA
* * * * *
34271603 TCTAGCCT-AAGAATAAAAGGGATTGT-TTTAATTAACTAATTATTTAAACGAAGAACGCACAGA
63 TCAAGCCTAAAAAATAAAAGGG-TTGTGTTTAACTAACTAATTAATTAAACGAAGAAAGCACAGA
* * * *
34271666 GAAA-AGAA-TTGGGG-AATTGCTTTTGGGAAAA-TTGATTGACTTGAGACAATACCTAAGGAAA
127 -AAAGA-AATTTGGGGAAAATACTTTTGGGAAAACTCGATTGA-TTAAGACAATACCTAAGGAAA
* * *
34271727 AATCCACTTAGACTGTACTTGTTATTCTGGCTCCGAATCGGACGATTTATTCATTCAACTTGTTC
189 AATCCACCTAGACTGTACTTGTTATT-TGACTCCAAATCGGACGATTTATTCATTCAACTTGTTC
* * * * *
34271792 CGTAGGGATCCCTAAGTTATGTTATTATCCCTATTCAAGACTAATAATGTCTAATCCCTAGATTG
253 CGTA-AGATCCCTAAGTTATATTATTATCCCT-CTCAAGACTAACAACGTCTAA-CCCTAGATTG
*
34271857 AATAACCGAGACT-T-TTCTCCAATTAACGATCTAGGGTTGCATTAACTCGATCTATGGATCCCC
315 AATAACCGA-AATATCTT-TCCAATTAACGATCTAGGGTTGCATTAACTCGATCTATGGATCCCC
* * *
34271920 TTATTACGTTTCACCCTAATTCGGCAAAATCTTGTCACCCTATTTCTAGGCATGCAA-TCAACTC
378 TTATTACGTTTCACCCTAATCCGGCAAAATCTTGTCACCCTATCTCTAGGCACGCAACT-AACTC
*
34271984 CGCTTAAATATGGA-AAATGTACTCTTAGACAGGGTCTA-TCCTCCTCTGAATAAGAGCATGT-C
442 CGCTTAAATAT-GACAAATGTACTCTTAGACAGGGTCTATTCCTCCTCTAAATAAGAGC-TGTAC
* * * *
34272046 TTGAATCAGTATCCTGGGATATCAAAGCAAGAATTAAGAACACATAATTAAGAACAAGTTAAATA
505 TTGAATCAATATCCTGGAATATCAAAACAAGAATTAAGAACACATAATTAAGAACAAGTCAAATA
34272111 TTTAT
570 TTTAT
34272116 CATACGATTC
Statistics
Matches: 503, Mismatches: 56, Indels: 32
0.85 0.09 0.05
Matches are distributed among these distances:
683 7 0.01
684 58 0.12
685 89 0.18
686 153 0.30
687 43 0.09
688 149 0.30
689 4 0.01
ACGTcount: A:0.36, C:0.18, G:0.15, T:0.31
Consensus pattern (685 bp):
GCAAGACCGGATTATCAAACCCATAGGAACAAAAAGTACTAGTATCAACTATATTTTTATTATCA
AGCCTAAAAAATAAAAGGGTTGTGTTTAACTAACTAATTAATTAAACGAAGAAAGCACAGAAAAG
AAATTTGGGGAAAATACTTTTGGGAAAACTCGATTGATTAAGACAATACCTAAGGAAAAATCCAC
CTAGACTGTACTTGTTATTTGACTCCAAATCGGACGATTTATTCATTCAACTTGTTCCGTAAGAT
CCCTAAGTTATATTATTATCCCTCTCAAGACTAACAACGTCTAACCCTAGATTGAATAACCGAAA
TATCTTTCCAATTAACGATCTAGGGTTGCATTAACTCGATCTATGGATCCCCTTATTACGTTTCA
CCCTAATCCGGCAAAATCTTGTCACCCTATCTCTAGGCACGCAACTAACTCCGCTTAAATATGAC
AAATGTACTCTTAGACAGGGTCTATTCCTCCTCTAAATAAGAGCTGTACTTGAATCAATATCCTG
GAATATCAAAACAAGAATTAAGAACACATAATTAAGAACAAGTCAAATATTTATGATCGCGTGAT
TCGTAACAAGTAATAAATATTTATAATGAAGATCAAACCTAGACTAACTATTATCACGATGAAAA
GGCATGCGCACCTATCAAATAATAGTACAGTAATG
Found at i:34272888 original size:24 final size:24
Alignment explanation
Indices: 34272857--34272905 Score: 64
Period size: 27 Copynumber: 2.0 Consensus size: 24
34272847 CTTGTCCTCA
34272857 AGAAAAA-TTCTCAACTTATAATC
1 AGAAAAACTTCTCAACTTATAATC
34272880 AGAATAAATCCTTCTCAACTTATAAT
1 AGAA-AAA--CTTCTCAACTTATAAT
34272906 TTCTATCAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
23 4 0.18
24 3 0.14
27 15 0.68
ACGTcount: A:0.45, C:0.18, G:0.04, T:0.33
Consensus pattern (24 bp):
AGAAAAACTTCTCAACTTATAATC
Found at i:34273788 original size:22 final size:22
Alignment explanation
Indices: 34273763--34273808 Score: 83
Period size: 22 Copynumber: 2.1 Consensus size: 22
34273753 ATAATAAAAG
34273763 TGAGCATGAAAAGATGAATAGA
1 TGAGCATGAAAAGATGAATAGA
*
34273785 TGAGCATGAAAGGATGAATAGA
1 TGAGCATGAAAAGATGAATAGA
34273807 TG
1 TG
34273809 CTCAAAAGGC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.46, C:0.04, G:0.30, T:0.20
Consensus pattern (22 bp):
TGAGCATGAAAAGATGAATAGA
Found at i:34275402 original size:6 final size:6
Alignment explanation
Indices: 34275391--34275418 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
34275381 GAAGTGTGAG
34275391 AAAATA AAAATA AAAATA AAAATA AAAA
1 AAAATA AAAATA AAAATA AAAATA AAAA
34275419 AATCAAAATA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.86, C:0.00, G:0.00, T:0.14
Consensus pattern (6 bp):
AAAATA
Found at i:34287907 original size:27 final size:27
Alignment explanation
Indices: 34287859--34287910 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 27
34287849 GCGAAGCTGC
*
34287859 CAGATATTGTGACAAAGTCACCAGATA
1 CAGATATTGTGACAAAGCCACCAGATA
* * *
34287886 CAGATATTGTGGCTAGGCCACCAGA
1 CAGATATTGTGACAAAGCCACCAGA
34287911 ACAAAAATAT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 21 1.00
ACGTcount: A:0.35, C:0.21, G:0.23, T:0.21
Consensus pattern (27 bp):
CAGATATTGTGACAAAGCCACCAGATA
Found at i:34288704 original size:27 final size:26
Alignment explanation
Indices: 34288674--34288847 Score: 222
Period size: 27 Copynumber: 6.5 Consensus size: 26
34288664 CAAAGCTATC
34288674 TCGGTAATTCTACCCTACAGGTGTATT
1 TCGGTAATTCTACCCTACAGG-GTATT
*
34288701 TCGGTATTTCTACCCTACAAGGGTATT
1 TCGGTAATTCTACCCTAC-AGGGTATT
*
34288728 TCGGTAATTCTATCCTACAGGGTATT
1 TCGGTAATTCTACCCTACAGGGTATT
34288754 TCGGTAATTCTACCCTACAGGGGTATT
1 TCGGTAATTCTACCCTACA-GGGTATT
** * * *
34288781 TCAATAATTTTAACCTACAAGGTTATT
1 TCGGTAATTCTACCCTAC-AGGGTATT
*
34288808 TCGGTAATTCTACCTTACAGGGGTATT
1 TCGGTAATTCTACCCTACA-GGGTATT
*
34288835 TCAGTAATTCTAC
1 TCGGTAATTCTAC
34288848 AACTTACCCA
Statistics
Matches: 127, Mismatches: 16, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
26 27 0.21
27 96 0.76
28 4 0.03
ACGTcount: A:0.25, C:0.20, G:0.17, T:0.37
Consensus pattern (26 bp):
TCGGTAATTCTACCCTACAGGGTATT
Found at i:34288732 original size:54 final size:54
Alignment explanation
Indices: 34288677--34288847 Score: 247
Period size: 54 Copynumber: 3.2 Consensus size: 54
34288667 AGCTATCTCG
* * *
34288677 GTAATTCTACCCTACAGGTGTATTTCGGTATTTCTACCCTACAAGGGTATTTCG
1 GTAATTCTACCCTACAGGTGTATTTCGGTAATTCTACCCTACAGGGGTATTTCA
*
34288731 GTAATTCTATCCTACAGG-GTATTTCGGTAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAGGTGTATTTCGGTAATTCTACCCTACAGGGGTATTTCA
* * * *
34288784 ATAATTTTAACCTACAAGGT-TATTTCGGTAATTCTACCTTACAGGGGTATTTCA
1 GTAATTCTACCCTAC-AGGTGTATTTCGGTAATTCTACCCTACAGGGGTATTTCA
34288838 GTAATTCTAC
1 GTAATTCTAC
34288848 AACTTACCCA
Statistics
Matches: 104, Mismatches: 11, Indels: 4
0.87 0.09 0.03
Matches are distributed among these distances:
53 44 0.42
54 60 0.58
ACGTcount: A:0.26, C:0.20, G:0.17, T:0.37
Consensus pattern (54 bp):
GTAATTCTACCCTACAGGTGTATTTCGGTAATTCTACCCTACAGGGGTATTTCA
Found at i:34288769 original size:80 final size:81
Alignment explanation
Indices: 34288674--34288847 Score: 255
Period size: 80 Copynumber: 2.2 Consensus size: 81
34288664 CAAAGCTATC
* ** *
34288674 TCGGTAATTCTACCCTACAGGTGTATTTCGGT-ATTTCTACCCTACAAGGGTATTTCGGTAATTC
1 TCGGTAATTCTACCCTACAGGGGTATTTCAATAATTT-TAACCTACAAGGGTATTTCGGTAATTC
34288738 TATCC-TACA-GGGTATT
65 TA-CCTTACAGGGGTATT
*
34288754 TCGGTAATTCTACCCTACAGGGGTATTTCAATAATTTTAACCTACAAGGTTATTTCGGTAATTCT
1 TCGGTAATTCTACCCTACAGGGGTATTTCAATAATTTTAACCTACAAGGGTATTTCGGTAATTCT
34288819 ACCTTACAGGGGTATT
66 ACCTTACAGGGGTATT
*
34288835 TCAGTAATTCTAC
1 TCGGTAATTCTAC
34288848 AACTTACCCA
Statistics
Matches: 85, Mismatches: 6, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
79 2 0.02
80 60 0.71
81 23 0.27
ACGTcount: A:0.25, C:0.20, G:0.17, T:0.37
Consensus pattern (81 bp):
TCGGTAATTCTACCCTACAGGGGTATTTCAATAATTTTAACCTACAAGGGTATTTCGGTAATTCT
ACCTTACAGGGGTATT
Found at i:34290388 original size:11 final size:11
Alignment explanation
Indices: 34290369--34290405 Score: 56
Period size: 11 Copynumber: 3.4 Consensus size: 11
34290359 ATTTTGTCCT
*
34290369 TTTTTGGCTCA
1 TTTTTGGCTCC
*
34290380 TTTTCGGCTCC
1 TTTTTGGCTCC
34290391 TTTTTGGCTCC
1 TTTTTGGCTCC
34290402 TTTT
1 TTTT
34290406 GATCTCCTAT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
11 23 1.00
ACGTcount: A:0.03, C:0.24, G:0.16, T:0.57
Consensus pattern (11 bp):
TTTTTGGCTCC
Found at i:34309985 original size:17 final size:17
Alignment explanation
Indices: 34309963--34309997 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
34309953 CAAAATTTGA
*
34309963 TATTTCGTGTTAAACTT
1 TATTTCGTATTAAACTT
34309980 TATTTCGTATTAAACTT
1 TATTTCGTATTAAACTT
34309997 T
1 T
34309998 TGTTTGAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.26, C:0.11, G:0.09, T:0.54
Consensus pattern (17 bp):
TATTTCGTATTAAACTT
Found at i:34311493 original size:9 final size:9
Alignment explanation
Indices: 34311479--34311512 Score: 52
Period size: 9 Copynumber: 3.8 Consensus size: 9
34311469 CAACCCACAA
34311479 TATTTTTTT
1 TATTTTTTT
34311488 TATTTTTTT
1 TATTTTTTT
34311497 GTA-TTTTTT
1 -TATTTTTTT
34311506 TATTTTT
1 TATTTTT
34311513 GCACTTCTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
8 2 0.09
9 19 0.83
10 2 0.09
ACGTcount: A:0.12, C:0.00, G:0.03, T:0.85
Consensus pattern (9 bp):
TATTTTTTT
Found at i:34316913 original size:22 final size:21
Alignment explanation
Indices: 34316878--34317007 Score: 68
Period size: 19 Copynumber: 6.7 Consensus size: 21
34316868 AAAAGGTATC
* *
34316878 TACAAATTAAATCTCTAAGAT
1 TACAAATCATATCTCTAAGAT
34316899 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATC-TCTAAGAT
* *
34316922 TGCATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
*
34316941 TGC-AATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
**
34316959 T--GTATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
* *
34316976 TGCATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
*
34316995 TGC-AATCATATCT
1 TACAAATCATATCT
34317008 AAGATTGTAT
Statistics
Matches: 94, Mismatches: 8, Indels: 15
0.80 0.07 0.13
Matches are distributed among these distances:
17 15 0.16
18 21 0.22
19 29 0.31
20 1 0.01
21 3 0.03
22 15 0.16
23 10 0.11
ACGTcount: A:0.39, C:0.16, G:0.08, T:0.36
Consensus pattern (21 bp):
TACAAATCATATCTCTAAGAT
Found at i:34316921 original size:23 final size:22
Alignment explanation
Indices: 34316878--34316935 Score: 64
Period size: 22 Copynumber: 2.6 Consensus size: 22
34316868 AAAAGGTATC
* *
34316878 TACAAATTAAATC-TCTAAGAT
1 TACAAATCATATCTTCTAAGAT
34316899 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATCTTCTAAGAT
* *
34316922 TGCATATCATATCT
1 TACAAATCATATCT
34316936 AAGATTGCAA
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
21 3 0.10
22 18 0.58
23 10 0.32
ACGTcount: A:0.41, C:0.17, G:0.05, T:0.36
Consensus pattern (22 bp):
TACAAATCATATCTTCTAAGAT
Found at i:34316938 original size:19 final size:19
Alignment explanation
Indices: 34316914--34317058 Score: 239
Period size: 19 Copynumber: 7.9 Consensus size: 19
34316904 AATCATATCT
34316914 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
34316933 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
34316951 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
34316968 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
34316987 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
34317005 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
*
34317022 TATAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
34317041 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
34317059 TGAAGATTAT
Statistics
Matches: 118, Mismatches: 2, Indels: 12
0.89 0.02 0.09
Matches are distributed among these distances:
17 31 0.26
18 32 0.27
19 55 0.47
ACGTcount: A:0.37, C:0.14, G:0.11, T:0.37
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:34316982 original size:54 final size:54
Alignment explanation
Indices: 34316914--34317058 Score: 272
Period size: 54 Copynumber: 2.7 Consensus size: 54
34316904 AATCATATCT
34316914 TCTAAGATTGCATATCATATCTAAGATTGCAATCATATCTAAGATTGTATCATA
1 TCTAAGATTGCATATCATATCTAAGATTGCAATCATATCTAAGATTGTATCATA
34316968 TCTAAGATTGCATATCATATCTAAGATTGCAATCATATCTAAGATTGTATCATA
1 TCTAAGATTGCATATCATATCTAAGATTGCAATCATATCTAAGATTGTATCATA
*
34317022 TATAAGATTGCATATCATATCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCATATCTAAGATTGCA-ATCAT
34317059 TGAAGATTAT
Statistics
Matches: 89, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
54 84 0.94
55 5 0.06
ACGTcount: A:0.37, C:0.14, G:0.11, T:0.37
Consensus pattern (54 bp):
TCTAAGATTGCATATCATATCTAAGATTGCAATCATATCTAAGATTGTATCATA
Found at i:34316995 original size:73 final size:71
Alignment explanation
Indices: 34316907--34317059 Score: 238
Period size: 73 Copynumber: 2.1 Consensus size: 71
34316897 ATTACAAAAT
*
34316907 CATATC-TTCTAAGATTGCATATCATATCTAAGATTGCAATCATATCTAAGATTG-TATCATATC
1 CATATCATTCTAAGATTGCA-ATCATATCTAAGATTG-AATCATATATAAGATTGATATCATATC
34316970 TAAGATTG
64 TAAGATTG
*
34316978 CATATCATATCTAAGATTGCAATCATATCTAAGATTGTATCATATATAAGATTGCATATCATATC
1 CATATCAT-TCTAAGATTGCAATCATATCTAAGATTGAATCATATATAAGATTG-ATATCATATC
34317043 TAAGATTG
64 TAAGATTG
34317051 CATATCATT
1 CATATCATT
34317060 GAAGATTATA
Statistics
Matches: 76, Mismatches: 2, Indels: 7
0.89 0.02 0.08
Matches are distributed among these distances:
71 21 0.28
72 18 0.24
73 37 0.49
ACGTcount: A:0.37, C:0.15, G:0.10, T:0.38
Consensus pattern (71 bp):
CATATCATTCTAAGATTGCAATCATATCTAAGATTGAATCATATATAAGATTGATATCATATCTA
AGATTG
Found at i:34317454 original size:45 final size:45
Alignment explanation
Indices: 34317390--34317490 Score: 168
Period size: 45 Copynumber: 2.3 Consensus size: 45
34317380 AGAAGGCGAT
34317390 ATCTGCTATCTTTGATCTGCTCCCCGTCTAATACAGAGACACCAA
1 ATCTGCTATCTTTGATCTGCTCCCCGTCTAATACAGAGACACCAA
* * *
34317435 ATCTGTTATCTTTGATCTGCTCCCCGTCTAATATAGAGACGCCAA
1 ATCTGCTATCTTTGATCTGCTCCCCGTCTAATACAGAGACACCAA
34317480 ATCTGCT-TCTT
1 ATCTGCTATCTT
34317491 CAATCTGCCC
Statistics
Matches: 52, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
44 4 0.08
45 48 0.92
ACGTcount: A:0.24, C:0.29, G:0.14, T:0.34
Consensus pattern (45 bp):
ATCTGCTATCTTTGATCTGCTCCCCGTCTAATACAGAGACACCAA
Found at i:34317702 original size:86 final size:85
Alignment explanation
Indices: 34317612--34317887 Score: 211
Period size: 86 Copynumber: 3.2 Consensus size: 85
34317602 ATGCCAAATC
34317612 ATCTTGGATCTGCTTCAGTAAAATCATCTGAAGGTTAGATCTGCTATGTATCTACTCTCCGTCGA
1 ATCTTGGATCTGCTTCAGTAAAA-CATCTGAAGGTTAGATCTGCTATGTATCTACTCTCCGTCGA
34317677 AATAGAGATGCCAGATCTGTT
65 AATAGAGATGCCAGATCTGTT
* ** * * * * * * * * *
34317698 ATCTTGGATCTACTTTGGTGTGAGAACATCCGAAAGTCAAATCTGCTATGTCTTCGATTTGTTCC
1 ATCTTGGATCTGC-TT-CAGT-AAAACATCTGAAGGTTAGATCTGCTATGT-ATCTA-CT-CTCC
* * * *
34317763 -TTGTAAACACAAGAATGCCAAATC----
60 GTCG-AAATA-GAG-ATGCCAGATCTGTT
* * * * * *
34317787 ATCTTAGATCTGCTTCAATATAAACATCTGAAGGCTAGACCTGCTATGTACCTGCTCTCCGTCGA
1 ATCTTGGATCTGCTTCAGTA-AAACATCTGAAGGTTAGATCTGCTATGTATCTACTCTCCGTCGA
*
34317852 AATAGAGATGCTAGATCTGTT
65 AATAGAGATGCCAGATCTGTT
34317873 ATCTTGGATCTGCTT
1 ATCTTGGATCTGCTT
34317888 TGGTGTGAGA
Statistics
Matches: 135, Mismatches: 40, Indels: 30
0.66 0.20 0.15
Matches are distributed among these distances:
82 8 0.06
83 2 0.01
84 7 0.05
85 3 0.02
86 28 0.21
87 24 0.18
88 25 0.19
89 17 0.13
90 3 0.02
91 7 0.05
92 2 0.01
93 9 0.07
ACGTcount: A:0.27, C:0.21, G:0.19, T:0.33
Consensus pattern (85 bp):
ATCTTGGATCTGCTTCAGTAAAACATCTGAAGGTTAGATCTGCTATGTATCTACTCTCCGTCGAA
ATAGAGATGCCAGATCTGTT
Found at i:34317785 original size:175 final size:175
Alignment explanation
Indices: 34317555--34318036 Score: 762
Period size: 175 Copynumber: 2.8 Consensus size: 175
34317545 GTAAACACGT
* * * * *
34317555 GAAAGCCAAATCTGCTGTGTCTTCGA-TTGCTCCTTGTGAACACAAGGATGCCAAATCATCTTGG
1 GAAAGTCAAATCTGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGAATGCCAAATCATCTTGG
*
34317619 ATCTGCTTCAGTAAAATCATCTGAAGGTTAGATCTGCTATGTATCTACTCTCCGTCGAAATAGAG
66 ATCTGCTTCAGTAAAATCATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCGTCGAAATAGAG
34317684 ATGCCAGATCTGTTATCTTGGATCTACTTTGGTGTGAGAACATCC
131 ATGCCAGATCTGTTATCTTGGATCTACTTTGGTGTGAGAACATCC
*
34317729 GAAAGTCAAATCTGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGAATGCCAAATCATCTTAG
1 GAAAGTCAAATCTGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGAATGCCAAATCATCTTGG
* * * *
34317794 ATCTGCTTCAATATAAA-CATCTGAAGGCTAGACCTGCTATGTACCTGCTCTCCGTCGAAATAGA
66 ATCTGCTTCAGTA-AAATCATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCGTCGAAATAGA
* *
34317858 GATGCTAGATCTGTTATCTTGGATCTGCTTTGGTGTGAGAACATCC
130 GATGCCAGATCTGTTATCTTGGATCTACTTTGGTGTGAGAACATCC
* *
34317904 GAAAGTCAAATCTGCTATGTCTTTGATTTGTTCCTTGTAAACACAAGAATGCCAAACCATCTTGG
1 GAAAGTCAAATCTGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGAATGCCAAATCATCTTGG
34317969 ATCTGCTTCAG-----TCATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCGTCGAAATAGAG
66 ATCTGCTTCAGTAAAATCATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCGTCGAAATAGAG
*
34318029 ACGCCAGA
131 ATGCCAGA
34318037 CTTCGATTTG
Statistics
Matches: 283, Mismatches: 22, Indels: 10
0.90 0.07 0.03
Matches are distributed among these distances:
170 51 0.18
174 24 0.08
175 205 0.72
176 3 0.01
ACGTcount: A:0.27, C:0.21, G:0.20, T:0.32
Consensus pattern (175 bp):
GAAAGTCAAATCTGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGAATGCCAAATCATCTTGG
ATCTGCTTCAGTAAAATCATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCGTCGAAATAGAG
ATGCCAGATCTGTTATCTTGGATCTACTTTGGTGTGAGAACATCC
Found at i:34319152 original size:19 final size:19
Alignment explanation
Indices: 34319124--34319180 Score: 64
Period size: 19 Copynumber: 3.1 Consensus size: 19
34319114 GGCCTCTCCA
*
34319124 TTTTTCTTTTTTCTTTTTT
1 TTTTTATTTTTTCTTTTTT
34319143 TTTTTATTTTTAT-TTTTTT
1 TTTTTATTTTT-TCTTTTTT
* *
34319162 CTTTTA-ATTTTCTTTTTT
1 TTTTTATTTTTTCTTTTTT
34319180 T
1 T
34319181 CCCTTTTTTT
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
17 1 0.03
18 9 0.28
19 21 0.66
20 1 0.03
ACGTcount: A:0.07, C:0.07, G:0.00, T:0.86
Consensus pattern (19 bp):
TTTTTATTTTTTCTTTTTT
Found at i:34319178 original size:26 final size:26
Alignment explanation
Indices: 34319130--34319180 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
34319120 TCCATTTTTC
* *
34319130 TTTTTTCTTTTTTTTTTTATTTTTAT
1 TTTTTTCTTTTATTTTCTATTTTTAT
*
34319156 TTTTTTCTTTTAATTTTCTTTTTTT
1 TTTTTTCTTTT-ATTTTCTATTTTT
34319181 CCCTTTTTTT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 11 0.52
27 10 0.48
ACGTcount: A:0.08, C:0.06, G:0.00, T:0.86
Consensus pattern (26 bp):
TTTTTTCTTTTATTTTCTATTTTTAT
Found at i:34319181 original size:19 final size:19
Alignment explanation
Indices: 34319132--34319181 Score: 75
Period size: 19 Copynumber: 2.7 Consensus size: 19
34319122 CATTTTTCTT
*
34319132 TTTTCTTTTTTT-TTTTAT
1 TTTTCTTTTTTTCTTTTAA
*
34319150 TTTTATTTTTTTCTTTTAA
1 TTTTCTTTTTTTCTTTTAA
34319169 TTTTCTTTTTTTC
1 TTTTCTTTTTTTC
34319182 CCTTTTTTTT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
18 11 0.39
19 17 0.61
ACGTcount: A:0.08, C:0.08, G:0.00, T:0.84
Consensus pattern (19 bp):
TTTTCTTTTTTTCTTTTAA
Found at i:34319191 original size:19 final size:17
Alignment explanation
Indices: 34319130--34319191 Score: 61
Period size: 18 Copynumber: 3.4 Consensus size: 17
34319120 TCCATTTTTC
*
34319130 TTTTTTCTTTTTTTTTT
1 TTTTTTCTTTTTTTCTT
*
34319147 TATTTTTATTTTTTTCTT
1 T-TTTTTCTTTTTTTCTT
34319165 TTAATTTTCTTTTTTTCCCTT
1 TT--TTTTCTTTTTTT--CTT
34319186 TTTTTT
1 TTTTTT
34319192 GGAAATAGAA
Statistics
Matches: 37, Mismatches: 3, Indels: 8
0.77 0.06 0.17
Matches are distributed among these distances:
17 2 0.05
18 15 0.41
19 15 0.41
21 5 0.14
ACGTcount: A:0.06, C:0.10, G:0.00, T:0.84
Consensus pattern (17 bp):
TTTTTTCTTTTTTTCTT
Found at i:34336024 original size:19 final size:19
Alignment explanation
Indices: 34336000--34336144 Score: 194
Period size: 19 Copynumber: 7.9 Consensus size: 19
34335990 AATCATATCT
*
34336000 TCTAAGATTGCATCTCATA
1 TCTAAGATTGCATATCATA
34336019 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
34336037 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
34336054 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
*
34336073 ACTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
*
34336091 TCTAAGATTG--TCTCATA
1 TCTAAGATTGCATATCATA
*
34336108 TATAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
**
34336127 TCTCGGATTGCATATCAT
1 TCTAAGATTGCATATCAT
34336145 TGAAGATTAT
Statistics
Matches: 111, Mismatches: 9, Indels: 12
0.84 0.07 0.09
Matches are distributed among these distances:
17 30 0.27
18 30 0.27
19 51 0.46
ACGTcount: A:0.35, C:0.17, G:0.12, T:0.37
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:34336069 original size:14 final size:15
Alignment explanation
Indices: 34336014--34336123 Score: 69
Period size: 17 Copynumber: 6.5 Consensus size: 15
34336004 AGATTGCATC
34336014 TCATATCTAAGATTG
1 TCATATCTAAGATTG
34336029 CAATCATATCTAAGATTG
1 ---TCATATCTAAGATTG
34336047 TATCATATCTAAGATTG
1 --TCATATCTAAGATTG
*
34336064 CATATCATAACTAAGATTG
1 ----TCATATCTAAGATTG
34336083 CAATCATATCTAAGATTG
1 ---TCATATCTAAGATTG
*
34336101 TCTCATATATAAGATTG
1 --TCATATCTAAGATTG
34336118 -CATATC
1 TCATATC
34336124 ATATCTCGGA
Statistics
Matches: 81, Mismatches: 9, Indels: 8
0.83 0.09 0.08
Matches are distributed among these distances:
14 5 0.06
17 30 0.37
18 30 0.37
19 16 0.20
ACGTcount: A:0.37, C:0.15, G:0.11, T:0.36
Consensus pattern (15 bp):
TCATATCTAAGATTG
Found at i:34336072 original size:54 final size:54
Alignment explanation
Indices: 34336000--34336144 Score: 227
Period size: 54 Copynumber: 2.7 Consensus size: 54
34335990 AATCATATCT
*
34336000 TCTAAGATTGCATCTCATATCTAAGATTGCAATCATATCTAAGATTGTATCATA
1 TCTAAGATTGCATATCATATCTAAGATTGCAATCATATCTAAGATTGTATCATA
* *
34336054 TCTAAGATTGCATATCATAACTAAGATTGCAATCATATCTAAGATTGTCTCATA
1 TCTAAGATTGCATATCATATCTAAGATTGCAATCATATCTAAGATTGTATCATA
* **
34336108 TATAAGATTGCATATCATATCTCGGATTGCATATCAT
1 TCTAAGATTGCATATCATATCTAAGATTGCA-ATCAT
34336145 TGAAGATTAT
Statistics
Matches: 83, Mismatches: 7, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
54 78 0.94
55 5 0.06
ACGTcount: A:0.35, C:0.17, G:0.12, T:0.37
Consensus pattern (54 bp):
TCTAAGATTGCATATCATATCTAAGATTGCAATCATATCTAAGATTGTATCATA
Found at i:34336082 original size:73 final size:72
Alignment explanation
Indices: 34336001--34336144 Score: 202
Period size: 73 Copynumber: 2.0 Consensus size: 72
34335991 ATCATATCTT
* *
34336001 CTAAGATTGCATCTCATATCTAAGATTG-CAATCATATCTAAGATTG-TATCATATCTAAGATTG
1 CTAAGATTGCA-ATCATATCTAAGATTGTC--TCATATATAAGATTGATATCATATCTAAGATTG
34336064 CATATCATAA
63 CATATCATAA
**
34336074 CTAAGATTGCAATCATATCTAAGATTGTCTCATATATAAGATTGCATATCATATCTCGGATTGCA
1 CTAAGATTGCAATCATATCTAAGATTGTCTCATATATAAGATTG-ATATCATATCTAAGATTGCA
34336139 TATCAT
65 TATCAT
34336145 TGAAGATTAT
Statistics
Matches: 64, Mismatches: 4, Indels: 6
0.86 0.05 0.08
Matches are distributed among these distances:
71 14 0.22
72 15 0.23
73 35 0.55
ACGTcount: A:0.35, C:0.17, G:0.12, T:0.36
Consensus pattern (72 bp):
CTAAGATTGCAATCATATCTAAGATTGTCTCATATATAAGATTGATATCATATCTAAGATTGCAT
ATCATAA
Found at i:34338781 original size:259 final size:258
Alignment explanation
Indices: 34338312--34338796 Score: 803
Period size: 259 Copynumber: 1.9 Consensus size: 258
34338302 GGATTACTTT
*
34338312 CTCGTAATCCACCTTATTCTTGTTACCCCACACGTAGTGTGGCATATCCGTGAGTGGTTCACTTT
1 CTCGTAATCCACCTTATTCTCGTTACCCCACACGTAGTGTGGCATATCCGTGAGTGGTTCACTTT
* * * *
34338377 GCCCTTCAGTACCTAGTAGTCTACCATTGGAGTCAATAATTTGTTTTCACTCCTAGGTTGGTCCC
66 GCCATTCAGTACCTAGTAGCCTACCATTGGAGTCAATAATTTGTTTTCACTCCTAGATTAGTCCC
34338442 TACAAAACTAGCTATTTGGATAGTACATTCCCAGTGGTTGTCCACTTTAAGGAAATGGTCTTGAT
131 TACAAAACTAGCTATTTGGATAGTACATTCCCAGTGGTTGTCCACTTTAAGGAAATGGTCTTGAT
*
34338507 AGATAGATTTGTCGTCCGATATATCC-TTCTTTGTCAATGGATTCTCTCTATCACCTCTTTTC
196 AGATAGATCTGTCGTCCGATATATCCATTCTTTGTCAATGGATTCTCTCTATCACCTCTTTTC
34338569 CTCGTAATCCACCTTATTCTCGTTACCCCACACGTAGTGTGGCATATCCGTGAGTGGTGGTTCAC
1 CTCGTAATCCACCTTATTCTCGTTACCCCACACGTAGTGTGGCATATCCGTGA---GTGGTTCAC
*** * *
34338634 TTTTTGATTTAGTACCTAGTAGCCTACCATTGGAGTGAATAATTT-TTTTCACTCCTAGATTAGT
63 TTTGCCATTCAGTACCTAGTAGCCTACCATTGGAGTCAATAATTTGTTTTCACTCCTAGATTAGT
* *
34338698 CCCTACAAAGCTAGCTATTTGGATAGTACATTCCCAGTGGTTGTCCACTTTAAGGGAATGGTCTT
128 CCCTACAAAACTAGCTATTTGGATAGTACATTCCCAGTGGTTGTCCACTTTAAGGAAATGGTCTT
*
34338763 GATAGGTAGATCTGTCGTCCGATATATCCATTCT
193 GATAGATAGATCTGTCGTCCGATATATCCATTCT
34338797 CTAGCACCTA
Statistics
Matches: 210, Mismatches: 14, Indels: 5
0.92 0.06 0.02
Matches are distributed among these distances:
257 52 0.25
259 107 0.51
260 51 0.24
ACGTcount: A:0.22, C:0.23, G:0.19, T:0.36
Consensus pattern (258 bp):
CTCGTAATCCACCTTATTCTCGTTACCCCACACGTAGTGTGGCATATCCGTGAGTGGTTCACTTT
GCCATTCAGTACCTAGTAGCCTACCATTGGAGTCAATAATTTGTTTTCACTCCTAGATTAGTCCC
TACAAAACTAGCTATTTGGATAGTACATTCCCAGTGGTTGTCCACTTTAAGGAAATGGTCTTGAT
AGATAGATCTGTCGTCCGATATATCCATTCTTTGTCAATGGATTCTCTCTATCACCTCTTTTC
Found at i:34339329 original size:27 final size:26
Alignment explanation
Indices: 34339299--34339413 Score: 140
Period size: 27 Copynumber: 4.3 Consensus size: 26
34339289 CATCCTGGCG
34339299 GACTACTCCGTGTTTAATGTCCCATCA
1 GACTA-TCCGTGTTTAATGTCCCATCA
***
34339326 GACTATCTCGTGTTTAGCATCCCATCA
1 GACTATC-CGTGTTTAATGTCCCATCA
*
34339353 GACTATTCTGTGTTTAATGTCCCATCA
1 GACTA-TCCGTGTTTAATGTCCCATCA
*
34339380 GACTATCCCATGTTTAATGTCCCATCA
1 GACTAT-CCGTGTTTAATGTCCCATCA
*
34339407 CACTATC
1 GACTATC
34339414 TTCGATGTCA
Statistics
Matches: 75, Mismatches: 10, Indels: 7
0.82 0.11 0.08
Matches are distributed among these distances:
26 4 0.05
27 69 0.92
28 2 0.03
ACGTcount: A:0.23, C:0.29, G:0.13, T:0.35
Consensus pattern (26 bp):
GACTATCCGTGTTTAATGTCCCATCA
Found at i:34339403 original size:54 final size:54
Alignment explanation
Indices: 34339299--34339412 Score: 156
Period size: 54 Copynumber: 2.1 Consensus size: 54
34339289 CATCCTGGCG
* * * *
34339299 GACTACTCCGTGTTTAATGTCCCATCAGACTATCTCGTGTTTAGCATCCCATCA
1 GACTATTCCGTGTTTAATGTCCCATCAGACTATCCCATGTTTAACATCCCATCA
* **
34339353 GACTATTCTGTGTTTAATGTCCCATCAGACTATCCCATGTTTAATGTCCCATCA
1 GACTATTCCGTGTTTAATGTCCCATCAGACTATCCCATGTTTAACATCCCATCA
*
34339407 CACTAT
1 GACTAT
34339413 CTTCGATGTC
Statistics
Matches: 52, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
54 52 1.00
ACGTcount: A:0.24, C:0.28, G:0.13, T:0.35
Consensus pattern (54 bp):
GACTATTCCGTGTTTAATGTCCCATCAGACTATCCCATGTTTAACATCCCATCA
Found at i:34345472 original size:27 final size:27
Alignment explanation
Indices: 34345442--34345618 Score: 169
Period size: 27 Copynumber: 6.5 Consensus size: 27
34345432 ATATTGAGCC
* *
34345442 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* * *
34345469 CGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
34345496 CGCACACTTAGTGCTACATAGTCAGACT
1 CGCACACTTAGTGCTACATAATCA-ACT
** ** *
34345524 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
34345551 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* *
34345578 CGCACACTTAGTGCAACATAGTCGAA-T
1 CGCACACTTAGTGCTACATAATC-AACT
34345605 CGCACACTTAGTGC
1 CGCACACTTAGTGC
34345619 CGCACAATTT
Statistics
Matches: 127, Mismatches: 19, Indels: 8
0.82 0.12 0.05
Matches are distributed among these distances:
27 102 0.80
28 25 0.20
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:34345581 original size:82 final size:81
Alignment explanation
Indices: 34345463--34345622 Score: 232
Period size: 82 Copynumber: 2.0 Consensus size: 81
34345453 TGCTATATAA
* * *
34345463 TCAACTCGCACACTTAGTGCCACGTAATCAAATCGCACACTTAGTGCTACATAGTCAGACTCGCA
1 TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAGTC-GAATCGCA
34345528 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
34345545 TCAATTCGCACACTTAGTG-CATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAATCGCA
1 TCAACTCGCACACTTAGTGCCA-CATAATCAAATCGCACACTTAGTGCAACATAGTCGAATCGCA
34345609 CACTTAGTGCCGCA
65 CACTTAGTGCCGCA
34345623 CAATTTAATC
Statistics
Matches: 70, Mismatches: 7, Indels: 3
0.88 0.09 0.04
Matches are distributed among these distances:
81 23 0.33
82 47 0.67
ACGTcount: A:0.28, C:0.29, G:0.17, T:0.26
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAGTCGAATCGCAC
ACTTAGTGCCGCATGG
Found at i:34352981 original size:35 final size:37
Alignment explanation
Indices: 34352910--34353007 Score: 150
Period size: 35 Copynumber: 2.7 Consensus size: 37
34352900 ATTATCTTTA
34352910 ATGATATGCAATCTTAGATATGATATGCAATCTTAGAT
1 ATGATA-GCAATCTTAGATATGATATGCAATCTTAGAT
34352948 ATGATA-CAATCTTAGATATGAT-TGCAATCTTAGAT
1 ATGATAGCAATCTTAGATATGATATGCAATCTTAGAT
34352983 ATGATATGCAATCTTAGA-A-GATATG
1 ATGATA-GCAATCTTAGATATGATATG
34353008 ATTTTGTAAT
Statistics
Matches: 57, Mismatches: 0, Indels: 8
0.88 0.00 0.12
Matches are distributed among these distances:
35 22 0.39
36 19 0.33
37 10 0.18
38 6 0.11
ACGTcount: A:0.38, C:0.10, G:0.16, T:0.36
Consensus pattern (37 bp):
ATGATAGCAATCTTAGATATGATATGCAATCTTAGAT
Found at i:34353007 original size:17 final size:19
Alignment explanation
Indices: 34352910--34353000 Score: 161
Period size: 19 Copynumber: 4.9 Consensus size: 19
34352900 ATTATCTTTA
34352910 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
34352929 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
34352948 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
34352965 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
34352983 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
34353001 AGATATGATT
Statistics
Matches: 69, Mismatches: 0, Indels: 6
0.92 0.00 0.08
Matches are distributed among these distances:
17 16 0.23
18 16 0.23
19 37 0.54
ACGTcount: A:0.37, C:0.11, G:0.15, T:0.36
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:34353026 original size:22 final size:22
Alignment explanation
Indices: 34352910--34353023 Score: 96
Period size: 19 Copynumber: 5.8 Consensus size: 22
34352900 ATTATCTTTA
34352910 ATGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
34352929 ATGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
34352948 ATGATA--CAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
34352965 ATGAT-TGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
34352983 ATGATATGCAATCTTAGAAGAT
1 ATGATATGCAATCTTAGAAGAT
* *
34353005 ATGATTTTGTAATCTTAGA
1 ATGA-TATGCAATCTTAGA
34353024 GATTTAATTT
Statistics
Matches: 86, Mismatches: 2, Indels: 10
0.88 0.02 0.10
Matches are distributed among these distances:
17 16 0.19
18 16 0.19
19 34 0.40
22 8 0.09
23 12 0.14
ACGTcount: A:0.37, C:0.10, G:0.16, T:0.38
Consensus pattern (22 bp):
ATGATATGCAATCTTAGAAGAT
Found at i:34363455 original size:89 final size:87
Alignment explanation
Indices: 34363326--34363487 Score: 200
Period size: 89 Copynumber: 1.8 Consensus size: 87
34363316 ATTCGACGGA
* * *
34363326 GAGCAGATCGAAGACATATCAGATCTAACCTTCGGATGTTTTCACATTGAAGTAGATCCAAGATG
1 GAGCAGATCGAAGACATAGCAGATCTAACCTTCGGATG-TTT-ACACTGAAGCAGATCCAAGATG
34363391 ATTTGGCATCCTTCCGTTGACAAG
64 ATTTGGCATCCTTCCGTTGACAAG
* ** * * * *
34363415 GAGCAGATCGAAGACATAGCAGATTTGGCTTTCATG-TGTTTACGCTGAAGCAGATCTAAGATGA
1 GAGCAGATCGAAGACATAGCAGATCTAACCTTC-GGATGTTTACACTGAAGCAGATCCAAGATGA
34363479 TTTGGCATC
65 TTTGGCATC
34363488 TCTGTACTGT
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
87 28 0.45
88 3 0.05
89 30 0.48
90 1 0.02
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (87 bp):
GAGCAGATCGAAGACATAGCAGATCTAACCTTCGGATGTTTACACTGAAGCAGATCCAAGATGAT
TTGGCATCCTTCCGTTGACAAG
Found at i:34363632 original size:78 final size:78
Alignment explanation
Indices: 34363520--34363814 Score: 430
Period size: 78 Copynumber: 3.8 Consensus size: 78
34363510 CGAAGAAACA
** * * * * *
34363520 GATTTGGCATCTCCATATTCGACAGAGAGTAGATCGAAGATATAGCAGATCTGACCTTCATTGAA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAA
*
34363585 GCAGATCCAATAT
66 GCAGATCCAAGAT
* *
34363598 GATTTGGCATCTCTGTTTTAGACGGGGAGCAGATCGAAGACACAGCAGATCTGACCTTCATTGAA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAA
34363663 GCAGATCCAAGAT
66 GCAGATCCAAGAT
* * * *
34363676 GATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGAAGACATAACAGAT-TGGACCTTTATTAA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCT-GACCTTCATTGA
34363740 AGCAGATCCAAGAT
65 AGCAGATCCAAGAT
* *
34363754 GATTTGGCATCTCTGTATTAGACAGGGAGCAGATCAAAGACATAGCAGATCTGACCTTCAT
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCAT
34363815 GTGTTTACAT
Statistics
Matches: 194, Mismatches: 21, Indels: 4
0.89 0.10 0.02
Matches are distributed among these distances:
77 1 0.01
78 192 0.99
79 1 0.01
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.26
Consensus pattern (78 bp):
GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAA
GCAGATCCAAGAT
Found at i:34363949 original size:44 final size:45
Alignment explanation
Indices: 34363754--34364026 Score: 268
Period size: 45 Copynumber: 6.1 Consensus size: 45
34363744 GATCCAAGAT
* * *
34363754 GATTTGGCATCTCTGTATTAGACAGGGAGCAGATCAAAGACATAGCA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAG--ATAACA
* * * * * * * *
34363801 GATCTGACCT-TCATGTGTTTACATC--GAAGCAGATCCAAGATGACA
1 GATTTGGCATCTC-TGT-ATTAGA-CGGGGAGCAGATCGAAGATAACA
* * * *
34363846 GATTTGGCATCTCTATATTAGACGAGGAGCAAATCGGAGATAACA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAACA
* * *
34363891 GATTTGACATCTCTGTATTAGACGGGGAGCAGATTGAAGA-AGCA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAACA
*
34363935 GATTTGGCATCTCTGTATTAGAC-GGGAGCAGATCTAAGATAACA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAACA
* * *
34363979 GATTTCGCATCTCTGTATTAGACGGGGAGCAGATCAAAGATAGCA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAACA
34364024 GAT
1 GAT
34364027 ATCGCCTTCC
Statistics
Matches: 184, Mismatches: 34, Indels: 18
0.78 0.14 0.08
Matches are distributed among these distances:
43 15 0.08
44 54 0.29
45 84 0.46
46 4 0.02
47 22 0.12
48 4 0.02
49 1 0.01
ACGTcount: A:0.33, C:0.17, G:0.25, T:0.25
Consensus pattern (45 bp):
GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAACA
Found at i:34363994 original size:88 final size:90
Alignment explanation
Indices: 34363828--34364026 Score: 289
Period size: 88 Copynumber: 2.2 Consensus size: 90
34363818 TTTACATCGA
* *
34363828 AGCAGATCCAAGAT-GACAGATTTGGCATCTCTATATTAGACGAGGAGCAAATCGGAGATAACAG
1 AGCAGATCAAAGATAG-CAGATTTGGCATCTCTATATTAGACGAGGAGCAAATCGAAGATAACAG
34363892 ATTTGACATCTCTGTATTAGACGGGG
65 ATTTGACATCTCTGTATTAGACGGGG
** * * *
34363918 AGCAGATTGAAGA-AGCAGATTTGGCATCTCTGTATTAGACG-GGAGCAGATCTAAGATAACAGA
1 AGCAGATCAAAGATAGCAGATTTGGCATCTCTATATTAGACGAGGAGCAAATCGAAGATAACAGA
34363981 TTTCG-CATCTCTGTATTAGACGGGG
66 TTT-GACATCTCTGTATTAGACGGGG
34364006 AGCAGATCAAAGATAGCAGAT
1 AGCAGATCAAAGATAGCAGAT
34364027 ATCGCCTTCC
Statistics
Matches: 98, Mismatches: 8, Indels: 7
0.87 0.07 0.06
Matches are distributed among these distances:
88 53 0.54
89 33 0.34
90 12 0.12
ACGTcount: A:0.34, C:0.16, G:0.26, T:0.24
Consensus pattern (90 bp):
AGCAGATCAAAGATAGCAGATTTGGCATCTCTATATTAGACGAGGAGCAAATCGAAGATAACAGA
TTTGACATCTCTGTATTAGACGGGG
Found at i:34364400 original size:19 final size:19
Alignment explanation
Indices: 34364376--34364430 Score: 103
Period size: 19 Copynumber: 2.9 Consensus size: 19
34364366 ATTATCTTAA
34364376 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
34364395 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
34364414 ATGAT-TGCAATCTTAGA
1 ATGATATGCAATCTTAGA
34364431 AGATATGATT
Statistics
Matches: 36, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
18 12 0.33
19 24 0.67
ACGTcount: A:0.36, C:0.11, G:0.16, T:0.36
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:34364423 original size:37 final size:34
Alignment explanation
Indices: 34364369--34364437 Score: 95
Period size: 37 Copynumber: 1.9 Consensus size: 34
34364359 TGGAAATATT
34364369 ATCTTAAATGATATGCAATCTTAGATATGATATGCA
1 ATCTTAAATGATATGCAATCTTAGA-A-GATATGCA
34364405 ATCTTAGATATGAT-TGCAATCTTAGAAGATATG
1 ATCTTA-A-ATGATATGCAATCTTAGAAGATATG
34364438 ATTTTGTAAT
Statistics
Matches: 31, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
35 6 0.19
36 7 0.23
37 13 0.42
38 5 0.16
ACGTcount: A:0.38, C:0.10, G:0.16, T:0.36
Consensus pattern (34 bp):
ATCTTAAATGATATGCAATCTTAGAAGATATGCA
Found at i:34364453 original size:23 final size:21
Alignment explanation
Indices: 34364376--34364440 Score: 70
Period size: 19 Copynumber: 3.3 Consensus size: 21
34364366 ATTATCTTAA
34364376 ATGATATGCAATCTT---AGAT
1 ATGAT-TGCAATCTTAGAAGAT
34364395 ATGATATGCAATCTT---AGAT
1 ATGAT-TGCAATCTTAGAAGAT
34364414 ATGATTGCAATCTTAGAAGAT
1 ATGATTGCAATCTTAGAAGAT
34364435 ATGATT
1 ATGATT
34364441 TTGTAATCTT
Statistics
Matches: 43, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
18 9 0.21
19 24 0.56
21 10 0.23
ACGTcount: A:0.37, C:0.09, G:0.17, T:0.37
Consensus pattern (21 bp):
ATGATTGCAATCTTAGAAGAT
Found at i:34364740 original size:18 final size:17
Alignment explanation
Indices: 34364717--34364750 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
34364707 CATGTTTCCC
*
34364717 TTTTTTTATATATTTTAA
1 TTTTTTAATA-ATTTTAA
34364735 TTTTTTAATAATTTTA
1 TTTTTTAATAATTTTA
34364751 GTATCATATA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (17 bp):
TTTTTTAATAATTTTAA
Found at i:34368123 original size:46 final size:46
Alignment explanation
Indices: 34368071--34368206 Score: 166
Period size: 46 Copynumber: 3.0 Consensus size: 46
34368061 GCTCTTTGAA
* * *
34368071 ATGAAATGTGTAAGACAATGGTTGAAAGATACCATGGCAACGTGAC
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* * *
34368117 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAATATGAT
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* * * *
34368163 A-GAAAACGAGTAAGACCATAGTTGAAAGATACTATGGCATCATG
1 ATG-AAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATG
34368207 TCGAAGATAA
Statistics
Matches: 77, Mismatches: 12, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
45 1 0.01
46 76 0.99
ACGTcount: A:0.42, C:0.12, G:0.24, T:0.22
Consensus pattern (46 bp):
ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
Found at i:34368310 original size:13 final size:13
Alignment explanation
Indices: 34368289--34368322 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
34368279 ACCATATGAC
*
34368289 AAATGGTTATATA
1 AAATGGTTATACA
*
34368302 AATTGGTTATACA
1 AAATGGTTATACA
34368315 AAATGGTT
1 AAATGGTT
34368323 GTGTGAAATG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.41, C:0.03, G:0.18, T:0.38
Consensus pattern (13 bp):
AAATGGTTATACA
Found at i:34368422 original size:25 final size:24
Alignment explanation
Indices: 34368368--34368422 Score: 58
Period size: 25 Copynumber: 2.2 Consensus size: 24
34368358 TATACGTACA
* *
34368368 AAAATGAAATAATTAAGAAGATAG
1 AAAATGAAATAAGTAAGAACATAG
34368392 ATAAATGAAATAAGTATAGATACAT-G
1 A-AAATGAAATAAGTA-AGA-ACATAG
34368418 AAAAT
1 AAAAT
34368423 TAATTTATGT
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
24 1 0.04
25 17 0.65
26 5 0.19
27 3 0.12
ACGTcount: A:0.60, C:0.02, G:0.15, T:0.24
Consensus pattern (24 bp):
AAAATGAAATAAGTAAGAACATAG
Found at i:34375589 original size:19 final size:18
Alignment explanation
Indices: 34375560--34375595 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
34375550 ATATCAAAAA
34375560 TAAAAAAATAAAAATAAG
1 TAAAAAAATAAAAATAAG
*
34375578 TAAAACAAATAAGAATAA
1 TAAAA-AAATAAAAATAA
34375596 AATCTATCCT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 5 0.31
19 11 0.69
ACGTcount: A:0.75, C:0.03, G:0.06, T:0.17
Consensus pattern (18 bp):
TAAAAAAATAAAAATAAG
Found at i:34376580 original size:20 final size:20
Alignment explanation
Indices: 34376538--34376626 Score: 65
Period size: 20 Copynumber: 4.3 Consensus size: 20
34376528 AGTGCCTAGG
* *
34376538 CCATGTGGGG-GTCACCACAC
1 CCATGTGGGGAGGCA-CACGC
34376558 CCATGTGGGGAGGCACACGC
1 CCATGTGGGGAGGCACACGC
*
34376578 CCATGTGAAAGGAGGCACACAG-
1 CCATGTG--GGGAGGCACAC-GC
** *
34376600 CCATGTGGCTAAGGCACACCC
1 CCATGTGG-GGAGGCACACGC
34376621 CCATGT
1 CCATGT
34376627 AAGCTGAGGT
Statistics
Matches: 56, Mismatches: 7, Indels: 11
0.76 0.09 0.15
Matches are distributed among these distances:
20 21 0.38
21 17 0.30
22 17 0.30
23 1 0.02
ACGTcount: A:0.25, C:0.31, G:0.30, T:0.13
Consensus pattern (20 bp):
CCATGTGGGGAGGCACACGC
Found at i:34377305 original size:22 final size:22
Alignment explanation
Indices: 34377267--34377309 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
34377257 TTTCATATCA
*
34377267 AAAATAAAAAATAAAAATAAAC
1 AAAACAAAAAATAAAAATAAAC
34377289 AAAACAAATAAAT-AAAATAAA
1 AAAACAAA-AAATAAAAATAAA
34377310 ATCTAACCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 15 0.79
23 4 0.21
ACGTcount: A:0.81, C:0.05, G:0.00, T:0.14
Consensus pattern (22 bp):
AAAACAAAAAATAAAAATAAAC
Found at i:34378790 original size:3 final size:3
Alignment explanation
Indices: 34378782--34379070 Score: 143
Period size: 3 Copynumber: 96.0 Consensus size: 3
34378772 AAAAATAGAA
* * * *
34378782 AAT AAT AAT -AT ATT AAT AAG AAT TAT AAT AAT ATAT ATT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A-AT AAT AAT AAT
* ** *
34378827 AGCA- AAT AAT AA- AA- AAT AAC AAT GGGTT AAT AA- AGAT AAT AGT
1 A--AT AAT AAT AAT AAT AAT AAT AAT --AAT AAT AAT A-AT AAT AAT
* * * *
34378870 AAT AAT AGAT -GT AAA AAC AAT AAT AAT AAT AA- ATAT AAT AAT AGT
1 AAT AAT A-AT AAT AAT AAT AAT AAT AAT AAT AAT A-AT AAT AAT AAT
** * * *
34378915 AAT AAT AAT -AT GCT AAAT AAT AGT AGT AA- AA- AAT AAT AGT AAT
1 AAT AAT AAT AAT AAT -AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * * *
34378958 AAT AAG AAT ATT AAT AAT AGT AAT AAT AAC AAT AAT -AT AATT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA-T AAT
* * *
34379003 ATAT ATAT GA- AAT AAT AAT AAC AAT AAT AAT AAT AAT AAAT AAT AGT
1 A-AT A-AT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT -AAT AAT AAT
* *
34379050 AAT GAT AAT AAT AAA AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT
34379071 TAATTTGAAA
Statistics
Matches: 216, Mismatches: 48, Indels: 44
0.70 0.16 0.14
Matches are distributed among these distances:
2 19 0.09
3 174 0.81
4 21 0.10
5 2 0.01
ACGTcount: A:0.60, C:0.02, G:0.07, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:34378834 original size:23 final size:23
Alignment explanation
Indices: 34378775--34378837 Score: 65
Period size: 25 Copynumber: 2.6 Consensus size: 23
34378765 ATAAATCAAA
34378775 AATAGAAAATAATAATATATTAAT
1 AATAGAAAATAAT-ATATATTAAT
*
34378799 AAGA-ATTATAATAATATATATTAAT
1 AATAGA--A-AATAATATATATTAAT
*
34378824 AATAGCAAATAATA
1 AATAGAAAATAATA
34378838 AAAAATAACA
Statistics
Matches: 32, Mismatches: 3, Indels: 9
0.73 0.07 0.20
Matches are distributed among these distances:
23 8 0.25
24 4 0.12
25 14 0.44
26 6 0.19
ACGTcount: A:0.60, C:0.02, G:0.05, T:0.33
Consensus pattern (23 bp):
AATAGAAAATAATATATATTAAT
Found at i:34381376 original size:26 final size:26
Alignment explanation
Indices: 34381338--34381421 Score: 141
Period size: 26 Copynumber: 3.2 Consensus size: 26
34381328 TGATACAAAT
34381338 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
*
34381364 TGATAATATGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
34381390 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
34381416 TGATAA
1 TGATAA
34381422 GAATTTCATG
Statistics
Matches: 54, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 54 1.00
ACGTcount: A:0.35, C:0.06, G:0.23, T:0.37
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:34383082 original size:27 final size:27
Alignment explanation
Indices: 34383041--34383180 Score: 174
Period size: 27 Copynumber: 5.2 Consensus size: 27
34383031 GAGGAAGCGT
*
34383041 TCTGGTGGCTATGCCACAAATATCTGA
1 TCTGGTGGCTCTGCCACAAATATCTGA
34383068 TCTGGTGGCTCTGCCACAAATATCTGA
1 TCTGGTGGCTCTGCCACAAATATCTGA
* * *
34383095 TCTGGTGGCTTTGCCACATATATCTGT
1 TCTGGTGGCTCTGCCACAAATATCTGA
* *
34383122 TCTGGTGGCTCTGCCACGATTATCTGTA
1 TCTGGTGGCTCTGCCACAAATATCTG-A
* * * *
34383150 TCTGGTGACTCTGTCAC-ATTATCTGT
1 TCTGGTGGCTCTGCCACAAATATCTGA
34383176 TCTGG
1 TCTGG
34383181 CAGGCATACT
Statistics
Matches: 100, Mismatches: 12, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
26 5 0.05
27 80 0.80
28 15 0.15
ACGTcount: A:0.18, C:0.24, G:0.23, T:0.36
Consensus pattern (27 bp):
TCTGGTGGCTCTGCCACAAATATCTGA
Found at i:34383126 original size:54 final size:55
Alignment explanation
Indices: 34383041--34383180 Score: 194
Period size: 54 Copynumber: 2.6 Consensus size: 55
34383031 GAGGAAGCGT
* *
34383041 TCTGGTGGCTATGCCACAAATATCTGATCTGGTGGCTCTGCCACAAATATCTG-A
1 TCTGGTGGCTATGCCACATATATCTGTTCTGGTGGCTCTGCCACAAATATCTGTA
* * *
34383095 TCTGGTGGCTTTGCCACATATATCTGTTCTGGTGGCTCTGCCACGATTATCTGTA
1 TCTGGTGGCTATGCCACATATATCTGTTCTGGTGGCTCTGCCACAAATATCTGTA
* * *
34383150 TCTGGTGACTCTGTCACAT-TATCTGTTCTGG
1 TCTGGTGGCTATGCCACATATATCTGTTCTGG
34383181 CAGGCATACT
Statistics
Matches: 77, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
54 60 0.78
55 17 0.22
ACGTcount: A:0.18, C:0.24, G:0.23, T:0.36
Consensus pattern (55 bp):
TCTGGTGGCTATGCCACATATATCTGTTCTGGTGGCTCTGCCACAAATATCTGTA
Found at i:34387160 original size:26 final size:26
Alignment explanation
Indices: 34387124--34387207 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
34387114 TGATACAAAT
34387124 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
34387150 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
34387176 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
34387202 TGATAA
1 TGATAA
34387208 GAATTTCATG
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.35, C:0.06, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:34388867 original size:27 final size:27
Alignment explanation
Indices: 34388826--34388938 Score: 120
Period size: 27 Copynumber: 4.2 Consensus size: 27
34388816 GAGGAAGCGT
*
34388826 TCTGGTGGCTATGCCACAAATATCTGA
1 TCTGGTGGCTCTGCCACAAATATCTGA
* *
34388853 TCTGGTGGCTCTGCCACATATATCTGT
1 TCTGGTGGCTCTGCCACAAATATCTGA
* * *
34388880 TCTGGTAGCTCTGCCACGATTATCTGTA
1 TCTGGTGGCTCTGCCACAAATATCTG-A
* * * *
34388908 TCTGGTGACTCTGTCAC-ATTATCTGT
1 TCTGGTGGCTCTGCCACAAATATCTGA
34388934 TCTGG
1 TCTGG
34388939 CAGCCATGCT
Statistics
Matches: 73, Mismatches: 12, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
26 5 0.07
27 54 0.74
28 14 0.19
ACGTcount: A:0.18, C:0.24, G:0.22, T:0.36
Consensus pattern (27 bp):
TCTGGTGGCTCTGCCACAAATATCTGA
Found at i:34388931 original size:54 final size:54
Alignment explanation
Indices: 34388824--34388947 Score: 160
Period size: 54 Copynumber: 2.3 Consensus size: 54
34388814 TAGAGGAAGC
* *
34388824 GTTCTGGTGGCTATGCCACAAATATCTGATCTGGTGGCTCTGCCACATATATCT
1 GTTCTGGTAGCTATGCCACAAATATCTGATCTGGTGACTCTGCCACATATATCT
* * * *
34388878 GTTCTGGTAGCTCTGCCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATCT
1 GTTCTGGTAGCTATGCCACAAATATCTG-ATCTGGTGACTCTGCCACATATATCT
* *
34388932 GTTCTGGCAGCCATGC
1 GTTCTGGTAGCTATGC
34388948 TGCAAATTCT
Statistics
Matches: 60, Mismatches: 9, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
54 42 0.70
55 18 0.30
ACGTcount: A:0.18, C:0.25, G:0.23, T:0.35
Consensus pattern (54 bp):
GTTCTGGTAGCTATGCCACAAATATCTGATCTGGTGACTCTGCCACATATATCT
Found at i:34399497 original size:20 final size:20
Alignment explanation
Indices: 34399472--34399519 Score: 55
Period size: 20 Copynumber: 2.5 Consensus size: 20
34399462 TACAATATAT
34399472 ATCAATTTTTTTTTCAAAA-A
1 ATCAATTTTTTTTT-AAAAGA
**
34399492 ATCAATTCATTTTTAAAAGA
1 ATCAATTTTTTTTTAAAAGA
34399512 ATC-ATTTT
1 ATCAATTTT
34399520 CGGACAACCT
Statistics
Matches: 23, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
19 7 0.30
20 16 0.70
ACGTcount: A:0.40, C:0.10, G:0.02, T:0.48
Consensus pattern (20 bp):
ATCAATTTTTTTTTAAAAGA
Found at i:34403122 original size:6 final size:6
Alignment explanation
Indices: 34403112--34403158 Score: 55
Period size: 6 Copynumber: 8.2 Consensus size: 6
34403102 GAAGAAGAAT
*
34403112 AAAAATG AAAAAG -AAAAG AAAAAG AAAAAG --AAAG AAAAAT AAAAAG
1 AAAAA-G AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG
34403158 A
1 A
34403159 GGCAGGAAAG
Statistics
Matches: 35, Mismatches: 2, Indels: 7
0.80 0.05 0.16
Matches are distributed among these distances:
4 4 0.11
5 5 0.14
6 21 0.60
7 5 0.14
ACGTcount: A:0.81, C:0.00, G:0.15, T:0.04
Consensus pattern (6 bp):
AAAAAG
Found at i:34403125 original size:16 final size:16
Alignment explanation
Indices: 34403106--34403158 Score: 63
Period size: 17 Copynumber: 3.2 Consensus size: 16
34403096 GGAATAGAAG
*
34403106 AAGAATAAAAATGAAA
1 AAGAAAAAAAATGAAA
*
34403122 AAGAAAAGAAAAAGAAA
1 AAGAAAA-AAAATGAAA
34403139 AAGAAAGAAAAAT-AAA
1 AAGAAA-AAAAATGAAA
34403155 AAGA
1 AAGA
34403159 GGCAGGAAAG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
16 13 0.41
17 18 0.56
18 1 0.03
ACGTcount: A:0.79, C:0.00, G:0.15, T:0.06
Consensus pattern (16 bp):
AAGAAAAAAAATGAAA
Found at i:34403138 original size:17 final size:17
Alignment explanation
Indices: 34403112--34403158 Score: 69
Period size: 16 Copynumber: 2.8 Consensus size: 17
34403102 GAAGAAGAAT
34403112 AAAAATGAAAAAGAAAAG
1 AAAAA-GAAAAAGAAAAG
34403130 AAAAAGAAAAAG-AAAG
1 AAAAAGAAAAAGAAAAG
*
34403146 AAAAATAAAAAGA
1 AAAAAGAAAAAGA
34403159 GGCAGGAAAG
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
16 15 0.56
17 7 0.26
18 5 0.19
ACGTcount: A:0.81, C:0.00, G:0.15, T:0.04
Consensus pattern (17 bp):
AAAAAGAAAAAGAAAAG
Found at i:34403155 original size:27 final size:27
Alignment explanation
Indices: 34403101--34403155 Score: 67
Period size: 27 Copynumber: 2.0 Consensus size: 27
34403091 AGAAAGGAAT
* *
34403101 AGAAGAAGAATAAAAATGAAAAAGAAA
1 AGAAAAAGAATAAAAAAGAAAAAGAAA
*
34403128 AGAAAAAGAA-AAAGAAAGAAAAATAAA
1 AGAAAAAGAATAAA-AAAGAAAAAGAAA
34403155 A
1 A
34403156 AGAGGCAGGA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
26 3 0.12
27 21 0.88
ACGTcount: A:0.78, C:0.00, G:0.16, T:0.05
Consensus pattern (27 bp):
AGAAAAAGAATAAAAAAGAAAAAGAAA
Found at i:34406383 original size:20 final size:20
Alignment explanation
Indices: 34406358--34406424 Score: 86
Period size: 20 Copynumber: 3.5 Consensus size: 20
34406348 CCAGCAAAAA
34406358 ACAAAAACCAAACACAGACC
1 ACAAAAACCAAACACAGACC
34406378 ACAAAAACCAAACACAGA-C
1 ACAAAAACCAAACACAGACC
* *
34406397 AAAATAAAACAAACA-A-ACC
1 ACAA-AAACCAAACACAGACC
34406416 ACAAAAACC
1 ACAAAAACC
34406425 CCACTAAACC
Statistics
Matches: 41, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
18 5 0.12
19 9 0.22
20 27 0.66
ACGTcount: A:0.66, C:0.30, G:0.03, T:0.01
Consensus pattern (20 bp):
ACAAAAACCAAACACAGACC
Found at i:34406733 original size:41 final size:42
Alignment explanation
Indices: 34406680--34406759 Score: 126
Period size: 41 Copynumber: 1.9 Consensus size: 42
34406670 GCAAAAATTG
* *
34406680 AAAAACACAGAGCAATAGCGGCGCTTTTGGCAAAACGCCGCT
1 AAAAACACAGAGCAATAGCGGCGCTTTCGACAAAACGCCGCT
*
34406722 AAAAAC-CAGAGCATTAGCGGCGCTTTCGACAAAACGCC
1 AAAAACACAGAGCAATAGCGGCGCTTTCGACAAAACGCC
34406760 ATTAAAAGTC
Statistics
Matches: 35, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
41 29 0.83
42 6 0.17
ACGTcount: A:0.36, C:0.28, G:0.23, T:0.14
Consensus pattern (42 bp):
AAAAACACAGAGCAATAGCGGCGCTTTCGACAAAACGCCGCT
Found at i:34406988 original size:21 final size:22
Alignment explanation
Indices: 34406961--34407041 Score: 94
Period size: 21 Copynumber: 3.6 Consensus size: 22
34406951 ATAGTTTAAG
34406961 GTTTAGGGTTTAAGATATATGA
1 GTTTAGGGTTTAAGATATATGA
* *
34406983 -TTTAGGGTTTAAGGTTTATGA
1 GTTTAGGGTTTAAGATATATGA
*
34407004 GTTAACTATGGTTTAAGATATAT-A
1 GTT---TAGGGTTTAAGATATATGA
34407028 GTTTAGGGTTTAAG
1 GTTTAGGGTTTAAG
34407042 GTTTAGGAGT
Statistics
Matches: 49, Mismatches: 6, Indels: 9
0.77 0.09 0.14
Matches are distributed among these distances:
21 29 0.59
22 2 0.04
24 4 0.08
25 14 0.29
ACGTcount: A:0.30, C:0.01, G:0.26, T:0.43
Consensus pattern (22 bp):
GTTTAGGGTTTAAGATATATGA
Found at i:34407020 original size:46 final size:46
Alignment explanation
Indices: 34406967--34407057 Score: 157
Period size: 46 Copynumber: 2.0 Consensus size: 46
34406957 TAAGGTTTAG
*
34406967 GGTTTAAGATATAT-GATTTAGGGTTTAAGGTTTATGAGTTAACTAT
1 GGTTTAAGATATATAG-TTTAGGGTTTAAGGTTTAGGAGTTAACTAT
34407013 GGTTTAAGATATATAGTTTAGGGTTTAAGGTTTAGGAGTTAACTA
1 GGTTTAAGATATATAGTTTAGGGTTTAAGGTTTAGGAGTTAACTA
34407058 GTATTTGAAG
Statistics
Matches: 43, Mismatches: 1, Indels: 2
0.93 0.02 0.04
Matches are distributed among these distances:
46 42 0.98
47 1 0.02
ACGTcount: A:0.31, C:0.02, G:0.25, T:0.42
Consensus pattern (46 bp):
GGTTTAAGATATATAGTTTAGGGTTTAAGGTTTAGGAGTTAACTAT
Found at i:34409777 original size:20 final size:20
Alignment explanation
Indices: 34409752--34409792 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
34409742 TTACTATAAA
34409752 TCTTATTGGTAAAATTTTGC
1 TCTTATTGGTAAAATTTTGC
34409772 TCTTATTGGTAAAATTTTGC
1 TCTTATTGGTAAAATTTTGC
34409792 T
1 T
34409793 ATCTGTCCTG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.24, C:0.10, G:0.15, T:0.51
Consensus pattern (20 bp):
TCTTATTGGTAAAATTTTGC
Found at i:34411103 original size:17 final size:18
Alignment explanation
Indices: 34411081--34411114 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
34411071 TACATGTGGG
34411081 GGAATATGGAG-TCAACT
1 GGAATATGGAGTTCAACT
34411098 GGAATATGGAGTTCAAC
1 GGAATATGGAGTTCAAC
34411115 ATTTTGGCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 11 0.69
18 5 0.31
ACGTcount: A:0.35, C:0.12, G:0.29, T:0.24
Consensus pattern (18 bp):
GGAATATGGAGTTCAACT
Found at i:34411565 original size:42 final size:43
Alignment explanation
Indices: 34411433--34411612 Score: 220
Period size: 43 Copynumber: 4.2 Consensus size: 43
34411423 GATCATTGTT
* * *
34411433 TTTAGCGGCGTTTG-TGAAAAAAGCGTCACTAAAGGTCATGGTC
1 TTTAGCGGCGTTTGCT-TAAAAAGCGCCGCTAAAGGTCATGGTC
*
34411476 TTTAGCGGCGTTTGCTTAAAAAGCGCCGCTAAAGGTCATGGTT
1 TTTAGCGGCGTTTGCTTAAAAAGCGCCGCTAAAGGTCATGGTC
* * * * *
34411519 TTTAGCGGCGTTT-TTTTAAAAGCGCCGCTAAAAGTCCTAGTC
1 TTTAGCGGCGTTTGCTTAAAAAGCGCCGCTAAAGGTCATGGTC
* ** *
34411561 TTTAGCGGCATTTGCGAAAAAAACGCCGCTAAAGGTCATGGTC
1 TTTAGCGGCGTTTGCTTAAAAAGCGCCGCTAAAGGTCATGGTC
34411604 TTTAGCGGC
1 TTTAGCGGC
34411613 TTTTTTTCAA
Statistics
Matches: 116, Mismatches: 19, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
42 35 0.30
43 80 0.69
44 1 0.01
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.29
Consensus pattern (43 bp):
TTTAGCGGCGTTTGCTTAAAAAGCGCCGCTAAAGGTCATGGTC
Found at i:34411566 original size:85 final size:85
Alignment explanation
Indices: 34411425--34411624 Score: 249
Period size: 85 Copynumber: 2.3 Consensus size: 85
34411415 TTTTTTAAGA
* *** * * * *
34411425 TCATTGTTTTTAGCGGCGTTTGTGAAAAAAGCGTCACTAAAGGTCATGGTCTTTAGCGGCGTTTG
1 TCATGGTTTTTAGCGGCGTTT-TTTTAAAAGCGCCACTAAAAGTCATAGTCTTTAGCGGCATTTG
** *
34411490 CTTAAAAAGCGCCGCTAAAGG
65 CGAAAAAAACGCCGCTAAAGG
* *
34411511 TCATGGTTTTTAGCGGCGTTTTTTTAAAAGCGCCGCTAAAAGTCCTAGTCTTTAGCGGCATTTGC
1 TCATGGTTTTTAGCGGCGTTTTTTTAAAAGCGCCACTAAAAGTCATAGTCTTTAGCGGCATTTGC
34411576 GAAAAAAACGCCGCTAAAGG
66 GAAAAAAACGCCGCTAAAGG
*
34411596 TCATGGTCTTTAGCGGC-TTTTTTTCAAAA
1 TCATGGTTTTTAGCGGCGTTTTTTT-AAAA
34411625 AAACGCCACT
Statistics
Matches: 99, Mismatches: 14, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
84 7 0.07
85 72 0.73
86 20 0.20
ACGTcount: A:0.26, C:0.18, G:0.24, T:0.32
Consensus pattern (85 bp):
TCATGGTTTTTAGCGGCGTTTTTTTAAAAGCGCCACTAAAAGTCATAGTCTTTAGCGGCATTTGC
GAAAAAAACGCCGCTAAAGG
Found at i:34411625 original size:43 final size:43
Alignment explanation
Indices: 34411433--34411636 Score: 198
Period size: 43 Copynumber: 4.7 Consensus size: 43
34411423 GATCATTGTT
* * * *
34411433 TTTAGCGGCG-TTTGTGAAAAAAGCGTCACTAAAGGTCATGGTC
1 TTTAGCGGCGTTTTTTTAAAAAA-CGCCGCTAAAGGTCATGGTC
** * *
34411476 TTTAGCGGCGTTTGCTTAAAAAGCGCCGCTAAAGGTCATGGTT
1 TTTAGCGGCGTTTTTTTAAAAAACGCCGCTAAAGGTCATGGTC
* * * *
34411519 TTTAGCGGCGTTTTTTT-AAAAGCGCCGCTAAAAGTCCTAGTC
1 TTTAGCGGCGTTTTTTTAAAAAACGCCGCTAAAGGTCATGGTC
* ****
34411561 TTTAGCGGCATTTGCGAAAAAAACGCCGCTAAAGGTCATGGTC
1 TTTAGCGGCGTTTTTTTAAAAAACGCCGCTAAAGGTCATGGTC
*
34411604 TTTAGCGGC-TTTTTTTCAAAAAAACGCCACTAA
1 TTTAGCGGCGTTTTTTT--AAAAAACGCCGCTAA
34411637 TTTTTGCGGC
Statistics
Matches: 130, Mismatches: 27, Indels: 7
0.79 0.16 0.04
Matches are distributed among these distances:
42 36 0.28
43 72 0.55
44 22 0.17
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.29
Consensus pattern (43 bp):
TTTAGCGGCGTTTTTTTAAAAAACGCCGCTAAAGGTCATGGTC
Found at i:34413941 original size:17 final size:18
Alignment explanation
Indices: 34413888--34413985 Score: 146
Period size: 18 Copynumber: 5.5 Consensus size: 18
34413878 AATCATATCT
*
34413888 TCTAAGATTGTATATCATA
1 TCTAAGATTG-CTATCATA
*
34413907 TCTAAGATTGCAATCATA
1 TCTAAGATTGCTATCATA
34413925 TCTAAGATTG-TATCATA
1 TCTAAGATTGCTATCATA
*
34413942 TCTAAGATTGCAATCATA
1 TCTAAGATTGCTATCATA
34413960 TCTAAGATTG-TATCATA
1 TCTAAGATTGCTATCATA
34413977 TCTAAGATT
1 TCTAAGATT
34413986 ACATATCATT
Statistics
Matches: 73, Mismatches: 5, Indels: 4
0.89 0.06 0.05
Matches are distributed among these distances:
17 31 0.42
18 32 0.44
19 10 0.14
ACGTcount: A:0.37, C:0.13, G:0.11, T:0.39
Consensus pattern (18 bp):
TCTAAGATTGCTATCATA
Found at i:34413946 original size:35 final size:35
Alignment explanation
Indices: 34413888--34413994 Score: 178
Period size: 35 Copynumber: 3.0 Consensus size: 35
34413878 AATCATATCT
34413888 TCTAAGATTGTATATCATATCTAAGATTGCAATCATA
1 TCTAAGATTG--TATCATATCTAAGATTGCAATCATA
34413925 TCTAAGATTGTATCATATCTAAGATTGCAATCATA
1 TCTAAGATTGTATCATATCTAAGATTGCAATCATA
*
34413960 TCTAAGATTGTATCATATCTAAGATTACATATCAT
1 TCTAAGATTGTATCATATCTAAGATTGCA-ATCAT
34413995 TGAAGATTAT
Statistics
Matches: 68, Mismatches: 1, Indels: 3
0.94 0.01 0.04
Matches are distributed among these distances:
35 53 0.78
36 5 0.07
37 10 0.15
ACGTcount: A:0.37, C:0.14, G:0.10, T:0.38
Consensus pattern (35 bp):
TCTAAGATTGTATCATATCTAAGATTGCAATCATA
Found at i:34415720 original size:15 final size:15
Alignment explanation
Indices: 34415700--34415738 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 15
34415690 GTAATTTGAT
*
34415700 AAAAATATAAATTCA
1 AAAAATAAAAATTCA
*
34415715 AAAAATAAAAATTTA
1 AAAAATAAAAATTCA
*
34415730 AAAATTAAA
1 AAAAATAAA
34415739 TACAAAGTTA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.72, C:0.03, G:0.00, T:0.26
Consensus pattern (15 bp):
AAAAATAAAAATTCA
Found at i:34418025 original size:14 final size:13
Alignment explanation
Indices: 34418006--34418035 Score: 51
Period size: 13 Copynumber: 2.2 Consensus size: 13
34417996 AAATATCAAC
34418006 TAAAAATCAAAATT
1 TAAAAATC-AAATT
34418020 TAAAAATCAAATT
1 TAAAAATCAAATT
34418033 TAA
1 TAA
34418036 TCTAAAGATA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.50
14 8 0.50
ACGTcount: A:0.63, C:0.07, G:0.00, T:0.30
Consensus pattern (13 bp):
TAAAAATCAAATT
Found at i:34418386 original size:40 final size:40
Alignment explanation
Indices: 34418340--34418434 Score: 163
Period size: 40 Copynumber: 2.4 Consensus size: 40
34418330 ACGTTTTCCC
*
34418340 AAAAACGCCGCTAAAGGTGGACCTATAGCGGCGTTTCTGG
1 AAAAACGCCACTAAAGGTGGACCTATAGCGGCGTTTCTGG
* *
34418380 AAAAACGCCACTAAGGGTGGACCTATAGCGGCGTTTTTGG
1 AAAAACGCCACTAAAGGTGGACCTATAGCGGCGTTTCTGG
34418420 AAAAACGCCACTAAA
1 AAAAACGCCACTAAA
34418435 ATGTTAAGAA
Statistics
Matches: 51, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 51 1.00
ACGTcount: A:0.33, C:0.22, G:0.26, T:0.19
Consensus pattern (40 bp):
AAAAACGCCACTAAAGGTGGACCTATAGCGGCGTTTCTGG
Found at i:34418527 original size:154 final size:152
Alignment explanation
Indices: 34418171--34418547 Score: 389
Period size: 154 Copynumber: 2.5 Consensus size: 152
34418161 GATGGAGTTT
* * * * * *
34418171 TAGCGGCGTTTTTCAAAAAACGCCGCAATAGGTCAAGCTTTCGCGGCGTTTTTTGAAAAGGCACC
1 TAGCGGCGTTTTCCCAAAAACGCCGCAATAGGTCAAACTTTAGCGGCGTTTTTGGAAAA-ACACC
* * * * ** *
34418236 GCTATAGGTCGGCCTTTAGCGGCGTTTTACCAAAACGCCGCTAAAAGGTTAATCAAAACGACATC
65 ACTA-AGGTCGGCCTATAGCGGCGTTTTACAAAAACGCCACTAAAAGGTTAAGAAAAACAACATC
* *
34418301 GTTTTACATGAGCTTCATTGGCAG
129 ATTTTACATGAGCTTCATTGGCAA
* * ** * * * *
34418325 TAACGACGTTTTCCCAAAAACGCCGCTAA-AGGTGGACCTATAGCGGCGTTTCTGGAAAAACGCC
1 TAGCGGCGTTTTCCCAAAAACGCCGC-AATAGGTCAAACTTTAGCGGCGTTTTTGGAAAAACACC
** * *
34418389 ACTAAGGGT-GGACCTATAGCGGCGTTTTTGGAAAAACGCCACTAAAATGTTAAGAAAAACAACG
65 ACTAA-GGTCGG-CCTATAGCGGCG-TTTTACAAAAACGCCACTAAAAGGTTAAGAAAAACAACA
*
34418453 TCATTTTATATGAGCTTCATTGGCAA
127 TCATTTTACATGAGCTTCATTGGCAA
* * * * *
34418479 TAGCGGTGTTTTCCCAAAAACGCCGCCATAGGTCAAACTTTAGTGGCGTTTTTGAAAAAACTCCA
1 TAGCGGCGTTTTCCCAAAAACGCCGCAATAGGTCAAACTTTAGCGGCGTTTTTGGAAAAACACCA
34418544 CTAA
66 CTAA
34418548 AATGTTAAGA
Statistics
Matches: 179, Mismatches: 39, Indels: 10
0.79 0.17 0.04
Matches are distributed among these distances:
152 3 0.02
153 21 0.12
154 153 0.85
155 2 0.01
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.26
Consensus pattern (152 bp):
TAGCGGCGTTTTCCCAAAAACGCCGCAATAGGTCAAACTTTAGCGGCGTTTTTGGAAAAACACCA
CTAAGGTCGGCCTATAGCGGCGTTTTACAAAAACGCCACTAAAAGGTTAAGAAAAACAACATCAT
TTTACATGAGCTTCATTGGCAA
Found at i:34418568 original size:114 final size:114
Alignment explanation
Indices: 34418405--34418732 Score: 491
Period size: 114 Copynumber: 2.9 Consensus size: 114
34418395 GGTGGACCTA
* * *
34418405 TAGCGGCGTTTTTGGAAAAACGCCACTAAAATGTTAAGAAAAACAACGTCATTTTATATGAGCTT
1 TAGCGGCGTTTTTGAAAAAACACCACTAAAATGTTAAGAAAAACGACGTCATTTTATATGAGCTT
* * *
34418470 CATTGGCAATAGCGGTGTTTTCCCAAAAACGCCGCCA-TAGGTCAAACTT
66 CATTGGCAGTAGCGGCGTTTTCCCAAAAACGCCG-CAGTAGATCAAACTT
* * * *
34418519 TAGTGGCGTTTTTGAAAAAACTCCACTAAAATGTTAAGAAAAATGACGTCATTTTATATGTGCTT
1 TAGCGGCGTTTTTGAAAAAACACCACTAAAATGTTAAGAAAAACGACGTCATTTTATATGAGCTT
*
34418584 CATTGGCAGTAGCGGCGTTTTTCCAAAAACGCCGCAGTAGATCAAACTT
66 CATTGGCAGTAGCGGCGTTTTCCCAAAAACGCCGCAGTAGATCAAACTT
*
34418633 TAGCGGCGTTTTTGAAAAAACACCGCTAAAATGTTAAGAAAAACGACGTCATTTTATATGAGCTT
1 TAGCGGCGTTTTTGAAAAAACACCACTAAAATGTTAAGAAAAACGACGTCATTTTATATGAGCTT
* *
34418698 CATTGTCAGTAGCGGCGCTTTT--TAAAAACGCCGCA
66 CATTGGCAGTAGCGGCG-TTTTCCCAAAAACGCCGCA
34418733 ATTGCTAAAT
Statistics
Matches: 195, Mismatches: 17, Indels: 5
0.90 0.08 0.02
Matches are distributed among these distances:
113 14 0.07
114 177 0.91
115 4 0.02
ACGTcount: A:0.33, C:0.19, G:0.20, T:0.29
Consensus pattern (114 bp):
TAGCGGCGTTTTTGAAAAAACACCACTAAAATGTTAAGAAAAACGACGTCATTTTATATGAGCTT
CATTGGCAGTAGCGGCGTTTTCCCAAAAACGCCGCAGTAGATCAAACTT
Found at i:34419181 original size:15 final size:14
Alignment explanation
Indices: 34419163--34419205 Score: 50
Period size: 15 Copynumber: 2.9 Consensus size: 14
34419153 TTTAATATTT
34419163 TTATAGGTTTAGGGG
1 TTAT-GGTTTAGGGG
*
34419178 TTATGGGTTTAAGGG
1 TTAT-GGTTTAGGGG
*
34419193 TTATGATTTAGGG
1 TTATGGTTTAGGG
34419206 TTGATGATTT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
14 7 0.29
15 17 0.71
ACGTcount: A:0.21, C:0.00, G:0.37, T:0.42
Consensus pattern (14 bp):
TTATGGTTTAGGGG
Found at i:34419212 original size:14 final size:13
Alignment explanation
Indices: 34419170--34419221 Score: 50
Period size: 14 Copynumber: 3.7 Consensus size: 13
34419160 TTTTTATAGG
*
34419170 TTTAGGGGTTATGGG
1 TTTA-GGGTTAT-GA
34419185 TTTAAGGGTTATGA
1 TTT-AGGGTTATGA
34419199 TTTAGGGTTGATGA
1 TTTAGGGTT-ATGA
*
34419213 TTTATGGTT
1 TTTAGGGTT
34419222 TGAGGTTTAT
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
13 6 0.18
14 16 0.48
15 10 0.30
16 1 0.03
ACGTcount: A:0.19, C:0.00, G:0.35, T:0.46
Consensus pattern (13 bp):
TTTAGGGTTATGA
Found at i:34419282 original size:14 final size:14
Alignment explanation
Indices: 34419263--34419289 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
34419253 ATGGTTTAAG
34419263 GGTTAGTGGTTAGT
1 GGTTAGTGGTTAGT
34419277 GGTTAGTGGTTAG
1 GGTTAGTGGTTAG
34419290 GATTAAAGGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.15, C:0.00, G:0.44, T:0.41
Consensus pattern (14 bp):
GGTTAGTGGTTAGT
Found at i:34424244 original size:9 final size:9
Alignment explanation
Indices: 34424221--34424348 Score: 103
Period size: 9 Copynumber: 13.6 Consensus size: 9
34424211 ATTGATCATT
*
34424221 ACTTAAATA
1 ACTTACATA
*
34424230 AATTACATA
1 ACTTACATA
34424239 ACTTACATA
1 ACTTACATA
* *
34424248 ACTCATATA
1 ACTTACATA
34424257 ACTTACATA
1 ACTTACATA
*
34424266 ATTTACATAACA
1 ACTTACAT---A
34424278 ACTTACATA
1 ACTTACATA
* *
34424287 ACTCACATT
1 ACTTACATA
*
34424296 ACTTAAATA
1 ACTTACATA
*
34424305 AATTACATA
1 ACTTACATA
*
34424314 ACTCACATA
1 ACTTACATA
*
34424323 ACGTACATAACA
1 ACTTACAT---A
34424335 ACTTACATA
1 ACTTACATA
34424344 ACTTA
1 ACTTA
34424349 ACTAATACAT
Statistics
Matches: 92, Mismatches: 21, Indels: 12
0.74 0.17 0.10
Matches are distributed among these distances:
9 76 0.83
12 16 0.17
ACGTcount: A:0.48, C:0.20, G:0.01, T:0.31
Consensus pattern (9 bp):
ACTTACATA
Found at i:34424290 original size:39 final size:39
Alignment explanation
Indices: 34424221--34424315 Score: 133
Period size: 39 Copynumber: 2.5 Consensus size: 39
34424211 ATTGATCATT
*
34424221 ACTTAAATAAATTACAT---AACTTACATAACTCATATA
1 ACTTAAATAAATTACATAACAACTTACATAACTCACATA
* * *
34424257 ACTTACATAATTTACATAACAACTTACATAACTCACATT
1 ACTTAAATAAATTACATAACAACTTACATAACTCACATA
34424296 ACTTAAATAAATTACATAAC
1 ACTTAAATAAATTACATAAC
34424316 TCACATAACG
Statistics
Matches: 50, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
36 15 0.30
39 35 0.70
ACGTcount: A:0.48, C:0.19, G:0.00, T:0.33
Consensus pattern (39 bp):
ACTTAAATAAATTACATAACAACTTACATAACTCACATA
Found at i:34424311 original size:48 final size:48
Alignment explanation
Indices: 34424232--34424324 Score: 123
Period size: 48 Copynumber: 1.9 Consensus size: 48
34424222 CTTAAATAAA
* * * * *
34424232 TTACATAACTTACATAACTCATATAACTTACATAATTTACATAACAAC
1 TTACATAACTCACATAACTCAAATAAATTACATAACTCACATAACAAC
* *
34424280 TTACATAACTCACATTACTTAAATAAATTACATAACTCACATAAC
1 TTACATAACTCACATAACTCAAATAAATTACATAACTCACATAAC
34424325 GTACATAACA
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
48 38 1.00
ACGTcount: A:0.46, C:0.22, G:0.00, T:0.32
Consensus pattern (48 bp):
TTACATAACTCACATAACTCAAATAAATTACATAACTCACATAACAAC
Found at i:34428271 original size:42 final size:42
Alignment explanation
Indices: 34428171--34428326 Score: 233
Period size: 43 Copynumber: 3.6 Consensus size: 42
34428161 ATTGGGCAAA
*
34428171 TTAGCGGCGTTTTTTATAAAAGCGCCGCTAAAAGTCCTGGTCT
1 TTAGCGGCGTTTTTTA-AAAAGCGCCGCGAAAAGTCCTGGTCT
*
34428214 TTAGTGGCGTTTTTTTAAAAAGCGCCGCGAAAAGTCCTGGTCT
1 TTAGCGGCG-TTTTTTAAAAAGCGCCGCGAAAAGTCCTGGTCT
34428257 TTAGCGGCGTTTTTTAAAAAAGC-CGCGCGAAAAGTCCTGGTCT
1 TTAGCGGCGTTTTTT-AAAAAGCGC-CGCGAAAAGTCCTGGTCT
*
34428300 TTAGCGGTGTTTTTTAAGAAAGCGCCG
1 TTAGCGGCGTTTTTTAA-AAAGCGCCG
34428327 TTAAAGACTA
Statistics
Matches: 104, Mismatches: 4, Indels: 10
0.88 0.03 0.08
Matches are distributed among these distances:
42 9 0.09
43 87 0.84
44 8 0.08
ACGTcount: A:0.24, C:0.19, G:0.26, T:0.31
Consensus pattern (42 bp):
TTAGCGGCGTTTTTTAAAAAGCGCCGCGAAAAGTCCTGGTCT
Found at i:34428346 original size:86 final size:86
Alignment explanation
Indices: 34428171--34428372 Score: 241
Period size: 86 Copynumber: 2.3 Consensus size: 86
34428161 ATTGGGCAAA
* * *
34428171 TTAGCGGCGTTTTTTATAAAAGCGCCGCTAAAAGTCCTGGTCTTTAGTGGCGTTTTTTTAAAAAG
1 TTAGCGGCGTTTTTTAAAAAAGCGCCGCGAAAAGTCCTGGTCTTTAGCGGCGTTTTTTTAAAAAG
* *
34428236 CGCCGCGAAAAGTCCTGGTCT
66 CGCCGCGAAAAGTACTGGACT
*
34428257 TTAGCGGCGTTTTTTAAAAAAGC-CGCGCGAAAAGTCCTGGTCTTTAGCGGTG-TTTTTTAAGAA
1 TTAGCGGCGTTTTTTAAAAAAGCGC-CGCGAAAAGTCCTGGTCTTTAGCGGCGTTTTTTTAA-AA
**
34428320 AGCGCCG-TTAAAG-ACTAGGACTT
64 AGCGCCGCGAAAAGTACT-GGAC-T
*
34428343 TTAGCGGCGTTTTTTTCAAAAAAACGCCGC
1 TTAGCGGCG-TTTTTT-AAAAAAGCGCCGC
34428373 CAATTTTACC
Statistics
Matches: 100, Mismatches: 9, Indels: 12
0.83 0.07 0.10
Matches are distributed among these distances:
84 2 0.02
85 16 0.16
86 65 0.65
87 6 0.06
88 10 0.10
89 1 0.01
ACGTcount: A:0.25, C:0.19, G:0.24, T:0.31
Consensus pattern (86 bp):
TTAGCGGCGTTTTTTAAAAAAGCGCCGCGAAAAGTCCTGGTCTTTAGCGGCGTTTTTTTAAAAAG
CGCCGCGAAAAGTACTGGACT
Found at i:34432417 original size:131 final size:131
Alignment explanation
Indices: 34432163--34432495 Score: 417
Period size: 131 Copynumber: 2.6 Consensus size: 131
34432153 AAAAAACCGA
* * * * *
34432163 AACCCAGCAC-AGTAGGGCACGATTCCTCGAATTTCTAGACATCGAACATTGCC-TCATTTT-AG
1 AACCCAGCACGA-TAGGGCACAATTCCACGAATTTCCAAACATCGAACATTGCCTTCGTTTTAAG
* * * *
34432225 AA--TTTAGAGAACGCGAGTGAAATTCTAAAGGGATATTCAATTATTTTGAACAAACGGGAAATT
65 AATTTTTAAAGAACACGAGTGAAATTCCAAAGGAATATTCAATTATTTTGAACAAACGGGAAATT
34432288 GC
130 GC
* *
34432290 AACCCAGCACGATAGGGCACTATTCCACGAATTTCCAAACATCGAACATTACCTTCGTTTTGAAG
1 AACCCAGCACGATAGGGCACAATTCCACGAATTTCCAAACATCGAACATTGCCTTCGTTTT-AAG
* * **
34432355 AATTTTTAAAG-ACATGAGTGAAATTCCAAAGGAATATTCGATTATTTTGATTAAACGGGAAATT
65 AATTTTTAAAGAACACGAGTGAAATTCCAAAGGAATATTCAATTATTTTGAACAAACGGGAAATT
34432419 GC
130 GC
* * * * *
34432421 AACCTAACACGATAGGGCACAATTCCACGAATTGCCAAACATCGGACATTGCCTTCGCTTTAAAG
1 AACCCAGCACGATAGGGCACAATTCCACGAATTTCCAAACATCGAACATTGCCTTCG-TTTTAAG
34432486 AATTTTTAAA
65 AATTTTTAAA
34432496 TAATGATAAG
Statistics
Matches: 178, Mismatches: 21, Indels: 10
0.85 0.10 0.05
Matches are distributed among these distances:
127 46 0.26
128 7 0.04
130 4 0.02
131 112 0.63
132 9 0.05
ACGTcount: A:0.35, C:0.20, G:0.17, T:0.27
Consensus pattern (131 bp):
AACCCAGCACGATAGGGCACAATTCCACGAATTTCCAAACATCGAACATTGCCTTCGTTTTAAGA
ATTTTTAAAGAACACGAGTGAAATTCCAAAGGAATATTCAATTATTTTGAACAAACGGGAAATTG
C
Found at i:34435195 original size:87 final size:87
Alignment explanation
Indices: 34434799--34435524 Score: 710
Period size: 87 Copynumber: 8.3 Consensus size: 87
34434789 CTGCAACTTC
* * * * *
34434799 AGGGAGACAAGAT-TAGCTATCTTCAGCCTATTACCCTACTGCTTAGAGGGTTAAGGCTCGCCGT
1 AGGGAGACAAGATCTA-CAATCTTCAGCCTGTTACCCTACTACTTAGGGGGTTAAGGCTTG-C-T
* * *
34434863 T-TTTGATCTGTTCCACTGTAAC--TTC
63 TCTTCGATCTGCTCCAC--T-ACTGTTT
** ** * * *
34434888 AAAGAGACAAGATCTATGATCTTCAACCTGTTACCCTACCACTTAGGGGGTTAAGACTTGCTTTC
1 AGGGAGACAAGATCTACAATCTTCAGCCTGTTACCCTACTACTTAGGGGGTTAAGGCTTGC-TTC
* ** ** *
34434953 TTTGATCTATTCCACTACAACTTC
65 TTCGATCTGCTCCACTAC-TGTTT
* * * * * ** *
34434977 AAGGAGATAAGATCTGCAAT-TT-ATCCTGTTACCCTACTACTT-GGGAGGTTAAAGCTCACCGT
1 AGGGAGACAAGATCTACAATCTTCAGCCTGTTACCCTACTACTTAGGG-GGTTAAGGCT-TGCTT
* * * ** *
34435039 CTTCGATTTGTTCCACTGCAACTTC
64 CTTCGATCTGCTCCACTAC-TGTTT
* * *
34435064 AGGGAGACAAGATCTTCAATCTTTAGCCTATTACCCTACTACTTAGGGGGTTAAGGCTTGCTTCT
1 AGGGAGACAAGATCTACAATCTTCAGCCTGTTACCCTACTACTTAGGGGGTTAAGGCTTGCTTCT
*
34435129 TCGATTTGCTCCACTACTGTTT
66 TCGATCTGCTCCACTACTGTTT
** * *
34435151 AGGGAGACAAGATCTGTAATCTTCAGCCTGTTACCTTACTACTTAAGGGGTTAAGGCTTGCTTCT
1 AGGGAGACAAGATCTACAATCTTCAGCCTGTTACCCTACTACTTAGGGGGTTAAGGCTTGCTTCT
*
34435216 TCGATCTTCTCCACTACTGTTT
66 TCGATCTGCTCCACTACTGTTT
* * *
34435238 AGGGAGACAAGATCTTCAATCTTCAGCCTATTACCCTACTACTTAGGGGGTTAAGACTTGCTTCT
1 AGGGAGACAAGATCTACAATCTTCAGCCTGTTACCCTACTACTTAGGGGGTTAAGGCTTGCTTCT
34435303 TCGATCTGCTCCACTACTGTTT
66 TCGATCTGCTCCACTACTGTTT
* * * **
34435325 AGGGAGGCAAGATCTACAATCTTCAGTCTGTTACCCTACTACTTAGGGGGATAAAACTTGCTTTC
1 AGGGAGACAAGATCTACAATCTTCAGCCTGTTACCCTACTACTTAGGGGGTTAAGGCTTGC-TTC
* *
34435390 TTCAATCTGCTCCACTGCTGTTT
65 TTCGATCTGCTCCACTACTGTTT
* *
34435413 AGCGAGACAAGATTTACAATCTTCAGCCTGTTACCCTACTACTTAGGGGGTTAAGGCTTGCTTTC
1 AGGGAGACAAGATCTACAATCTTCAGCCTGTTACCCTACTACTTAGGGGGTTAAGGCTTGC-TTC
* * * ** *
34435478 TTTGATCTACTCCACTGCAACTTC
65 TTCGATCTGCTCCACTAC-TGTTT
*
34435502 AGGGAGACAAGATCTGCAATCTT
1 AGGGAGACAAGATCTACAATCTT
34435525 TGCCAATGTC
Statistics
Matches: 543, Mismatches: 82, Indels: 24
0.84 0.13 0.04
Matches are distributed among these distances:
86 5 0.01
87 282 0.52
88 124 0.23
89 127 0.23
90 5 0.01
ACGTcount: A:0.24, C:0.24, G:0.19, T:0.33
Consensus pattern (87 bp):
AGGGAGACAAGATCTACAATCTTCAGCCTGTTACCCTACTACTTAGGGGGTTAAGGCTTGCTTCT
TCGATCTGCTCCACTACTGTTT
Found at i:34435284 original size:44 final size:45
Alignment explanation
Indices: 34435059--34435460 Score: 153
Period size: 44 Copynumber: 9.2 Consensus size: 45
34435049 TTCCACTGCA
* *
34435059 ACTTCAGGGAGACAAGATCTT-CAATCTTTAGCCTATTACCCTACT
1 ACTT-AGGGAGACAAGATCTTGCAATCTTCAGCCTGTTACCCTACT
* ** * * ** *
34435104 ACTTAGGGGGTTAAG-GCTTGC-TTCTTC-GATTTGCT-CCACTACT
1 ACTTAGGGAGACAAGATCTTGCAATCTTCAG-CCTGTTACC-CTACT
** * *
34435147 GTTTAGGGAGACAAGATC-TGTAATCTTCAGCCTGTTACCTTACT
1 ACTTAGGGAGACAAGATCTTGCAATCTTCAGCCTGTTACCCTACT
** * * *
34435191 ACTTAAGGG-GTTAAG-GCTTGC-TTCTTC-GATCT-TCT-CCACTACT
1 ACTT-AGGGAGACAAGATCTTGCAATCTTCAG-CCTGT-TACC-CTACT
** *
34435234 GTTTAGGGAGACAAGATCTT-CAATCTTCAGCCTATTACCCTACT
1 ACTTAGGGAGACAAGATCTTGCAATCTTCAGCCTGTTACCCTACT
* ** * * *
34435278 ACTTAGGGGGTTAAGA-CTTGC-TTCTTC-GATCTGCT-CCACTACT
1 ACTTAGGGAGACAAGATCTTGCAATCTTCAG-CCTGTTACC-CTACT
** * * *
34435321 GTTTAGGGAGGCAAGATC-TACAATCTTCAGTCTGTTACCCTACT
1 ACTTAGGGAGACAAGATCTTGCAATCTTCAGCCTGTTACCCTACT
* * * ** ** * *
34435365 ACTTAGGGGGATAA-AACTTGCTTTCTTCAATCTGCT-CCACTGCT
1 ACTTAGGGAGACAAGATCTTGCAATCTTCAGCCTGTTACC-CTACT
** * *
34435409 GTTTAGCGAGACAAGAT-TTACAATCTTCAGCCTGTTACCCTACT
1 ACTTAGGGAGACAAGATCTTGCAATCTTCAGCCTGTTACCCTACT
34435453 ACTTAGGG
1 ACTTAGGG
34435461 GGTTAAGGCT
Statistics
Matches: 245, Mismatches: 83, Indels: 59
0.63 0.21 0.15
Matches are distributed among these distances:
42 14 0.06
43 79 0.32
44 131 0.53
45 21 0.09
ACGTcount: A:0.23, C:0.24, G:0.19, T:0.34
Consensus pattern (45 bp):
ACTTAGGGAGACAAGATCTTGCAATCTTCAGCCTGTTACCCTACT
Found at i:34435691 original size:64 final size:64
Alignment explanation
Indices: 34435590--34435713 Score: 194
Period size: 64 Copynumber: 1.9 Consensus size: 64
34435580 ATGCCTATGG
* * *
34435590 TTATGCCAAATAATTAGGATACCATGATCGAAATGAATCAAATGCTCCTAATTAGATGTGATGC
1 TTATGCCAAATAACTAGGATACCATGATCGAAATGAATCAAACGCTCCTAACTAGATGTGATGC
* * *
34435654 TTATGTCAAATAACTAGGATGCTATGATCGAAATGAATCAAACGCTCCTAACTAGATGTG
1 TTATGCCAAATAACTAGGATACCATGATCGAAATGAATCAAACGCTCCTAACTAGATGTG
34435714 TTATGAATGA
Statistics
Matches: 54, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
64 54 1.00
ACGTcount: A:0.37, C:0.16, G:0.18, T:0.29
Consensus pattern (64 bp):
TTATGCCAAATAACTAGGATACCATGATCGAAATGAATCAAACGCTCCTAACTAGATGTGATGC
Found at i:34447341 original size:131 final size:131
Alignment explanation
Indices: 34447165--34447418 Score: 377
Period size: 131 Copynumber: 1.9 Consensus size: 131
34447155 AGAACGCGAG
* * *
34447165 TGAAATTCTAAAGGGATATTCGATTATTTTGAACAAACATGAAATTGCAACCCAGCACGATAGGG
1 TGAAATTCTAAAGGAATATTCGATTATTTTGAACAAACATGAAATTACAACCCAGCACGATAGGA
* * *
34447230 CACGATTCCCCGAATTGCCAAACATCGAACATTACCTTCGTTTTGAAGAATTTTTAAAGACATGA
66 CACGATTCCCCAAATTGCCAAACATCGAACATTACCTTCGCTTTAAAGAATTTTTAAAGACATGA
34447295 A
131 A
* *
34447296 TGAAATTCCT-AAGGAATATTTGATTATTTTGATCAAACA-GAAAATTACAACCCAGCACGATAG
1 TGAAATT-CTAAAGGAATATTCGATTATTTTGAACAAACATG-AAATTACAACCCAGCACGATAG
* * *
34447359 GACACGATTCCCTAAATTGCCAAACATCGGACATTGCCTTCGCTTTAAAGAATTTTTAAA
64 GACACGATTCCCCAAATTGCCAAACATCGAACATTACCTTCGCTTTAAAGAATTTTTAAA
34447419 TAATGATAAG
Statistics
Matches: 110, Mismatches: 11, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
130 1 0.01
131 107 0.97
132 2 0.02
ACGTcount: A:0.37, C:0.19, G:0.15, T:0.28
Consensus pattern (131 bp):
TGAAATTCTAAAGGAATATTCGATTATTTTGAACAAACATGAAATTACAACCCAGCACGATAGGA
CACGATTCCCCAAATTGCCAAACATCGAACATTACCTTCGCTTTAAAGAATTTTTAAAGACATGA
A
Found at i:34451081 original size:54 final size:54
Alignment explanation
Indices: 34450946--34451212 Score: 193
Period size: 54 Copynumber: 4.9 Consensus size: 54
34450936 TTCGCCCCTG
* * * *
34450946 ATGGTCGCAATCTTAAACCGGAAAATC-GTAAGATTCTAAAAATCTTATAAGTAT
1 ATGGTCACAATCTTAAATCGGAAAACCAG-AAGATTCTGAAAATCTTATAAGTAT
* ** * * * *
34451000 ATGGCCACGGTCTTAAATC-GATGAACCAGAAGATTCTGAAAGTATTTTAAGTAT
1 ATGGTCACAATCTTAAATCGGA-AAACCAGAAGATTCTGAAAATCTTATAAGTAT
* * * *
34451054 ATGGTCGCAATCTTAAATCGGCAAACCATAAGATT-TCGAAAATCTTATAAGTAA
1 ATGGTCACAATCTTAAATCGGAAAACCAGAAGATTCT-GAAAATCTTATAAGTAT
* * * *
34451108 AAGGTCACGATCTTAAATCGGAGAACC-GTAAGACTT-TGAAAATCTTATAAGTAA
1 ATGGTCACAATCTTAAATCGGAAAACCAG-AAGA-TTCTGAAAATCTTATAAGTAT
* * * * ** ** * *
34451162 AAGTTCACGATCTTAAATCTGCGAACCTTAAGATTTTAAAAATCTTATAAG
1 ATGGTCACAATCTTAAATCGGAAAACCAGAAGATTCTGAAAATCTTATAAG
34451213 GTAGATTTTT
Statistics
Matches: 172, Mismatches: 33, Indels: 16
0.78 0.15 0.07
Matches are distributed among these distances:
53 5 0.03
54 162 0.94
55 5 0.03
ACGTcount: A:0.39, C:0.15, G:0.16, T:0.29
Consensus pattern (54 bp):
ATGGTCACAATCTTAAATCGGAAAACCAGAAGATTCTGAAAATCTTATAAGTAT
Found at i:34451148 original size:108 final size:108
Alignment explanation
Indices: 34450946--34451212 Score: 281
Period size: 108 Copynumber: 2.5 Consensus size: 108
34450936 TTCGCCCCTG
* * * * * * *
34450946 ATGGTCGCAATCTTAAACCGGAAAATCGTAAGA-TTCTAAAAATCTTATAAGTATATGGCCACGG
1 ATGGTCGCAATCTTAAATCGGCAAACCATAAGATTTC-AAAAATCTTATAAGTAAAAGGCCACGA
* * *
34451010 TCTTAAATCGATGAACCAGAAGATTCTGAAAGTATTTTAAGTAT
65 TCTTAAATCGATGAACCAGAAGATTCTGAAAATATTATAAGTAA
* *
34451054 ATGGTCGCAATCTTAAATCGGCAAACCATAAGATTTCGAAAATCTTATAAGTAAAAGGTCACGAT
1 ATGGTCGCAATCTTAAATCGGCAAACCATAAGATTTCAAAAATCTTATAAGTAAAAGGCCACGAT
*
34451119 CTTAAATCGGA-GAACC-GTAAGACTT-TGAAAATCTTATAAGTAA
66 CTTAAATC-GATGAACCAG-AAGA-TTCTGAAAATATTATAAGTAA
* * * * * * * *
34451162 AAGTTCACGATCTTAAATCTGCGAACCTTAAGATTTTAAAAATCTTATAAG
1 ATGGTCGCAATCTTAAATCGGCAAACCATAAGATTTCAAAAATCTTATAAG
34451213 GTAGATTTTT
Statistics
Matches: 133, Mismatches: 22, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
107 1 0.01
108 125 0.94
109 7 0.05
ACGTcount: A:0.39, C:0.15, G:0.16, T:0.29
Consensus pattern (108 bp):
ATGGTCGCAATCTTAAATCGGCAAACCATAAGATTTCAAAAATCTTATAAGTAAAAGGCCACGAT
CTTAAATCGATGAACCAGAAGATTCTGAAAATATTATAAGTAA
Found at i:34451374 original size:12 final size:13
Alignment explanation
Indices: 34451350--34451380 Score: 55
Period size: 12 Copynumber: 2.5 Consensus size: 13
34451340 TATACATTCT
34451350 AATTAATTGAGAA
1 AATTAATTGAGAA
34451363 AATTAA-TGAGAA
1 AATTAATTGAGAA
34451375 AATTAA
1 AATTAA
34451381 GCCTTGCGAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 12 0.67
13 6 0.33
ACGTcount: A:0.58, C:0.00, G:0.13, T:0.29
Consensus pattern (13 bp):
AATTAATTGAGAA
Found at i:34451770 original size:16 final size:17
Alignment explanation
Indices: 34451740--34451772 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
34451730 TAAATTTACC
*
34451740 TTTTATAATTTGTAAAA
1 TTTTATAATTAGTAAAA
34451757 TTTTA-AATTAGTAAAA
1 TTTTATAATTAGTAAAA
34451773 GTAAAATTGC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.45, C:0.00, G:0.06, T:0.48
Consensus pattern (17 bp):
TTTTATAATTAGTAAAA
Found at i:34451831 original size:22 final size:23
Alignment explanation
Indices: 34451806--34451867 Score: 72
Period size: 23 Copynumber: 2.7 Consensus size: 23
34451796 TAAAAATGAT
* * *
34451806 AAAATTTTAATTTAATTCT-TTA
1 AAAATTATAATTTAATTATAGTA
* *
34451828 AAAATTATATTTTTATTATAGTA
1 AAAATTATAATTTAATTATAGTA
34451851 AAAATTATAATTTAATT
1 AAAATTATAATTTAATT
34451868 TCGACCACTC
Statistics
Matches: 32, Mismatches: 7, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
22 15 0.47
23 17 0.53
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.52
Consensus pattern (23 bp):
AAAATTATAATTTAATTATAGTA
Found at i:34459675 original size:34 final size:34
Alignment explanation
Indices: 34459637--34459708 Score: 101
Period size: 34 Copynumber: 2.1 Consensus size: 34
34459627 ATAGAAGTAA
*
34459637 ATTATTTCGTGTTT-AACGTTGATACTATCGATCT
1 ATTATTTCGTGTTTGAA-ATTGATACTATCGATCT
* *
34459671 ATTATTTTGTGTTTGAAATTGATGCTATCGATCT
1 ATTATTTCGTGTTTGAAATTGATACTATCGATCT
34459705 ATTA
1 ATTA
34459709 GTGGTAAAAT
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
34 32 0.94
35 2 0.06
ACGTcount: A:0.25, C:0.11, G:0.15, T:0.49
Consensus pattern (34 bp):
ATTATTTCGTGTTTGAAATTGATACTATCGATCT
Found at i:34463469 original size:35 final size:35
Alignment explanation
Indices: 34463423--34463489 Score: 125
Period size: 35 Copynumber: 1.9 Consensus size: 35
34463413 AGTTTGAACC
*
34463423 CAATTCAACATTACCCTTAGATACTTGTAGAAACG
1 CAATTCAACATTACCCTTAAATACTTGTAGAAACG
34463458 CAATTCAACATTACCCTTAAATACTTGTAGAA
1 CAATTCAACATTACCCTTAAATACTTGTAGAA
34463490 CTAAGCCTAG
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 31 1.00
ACGTcount: A:0.39, C:0.22, G:0.09, T:0.30
Consensus pattern (35 bp):
CAATTCAACATTACCCTTAAATACTTGTAGAAACG
Found at i:34464601 original size:46 final size:46
Alignment explanation
Indices: 34464534--34464623 Score: 180
Period size: 46 Copynumber: 2.0 Consensus size: 46
34464524 ATCTCCCAAA
34464534 ATTTTGCCATTATTAGGTGTGCCTCTAAACATTCATATCCATGTTG
1 ATTTTGCCATTATTAGGTGTGCCTCTAAACATTCATATCCATGTTG
34464580 ATTTTGCCATTATTAGGTGTGCCTCTAAACATTCATATCCATGT
1 ATTTTGCCATTATTAGGTGTGCCTCTAAACATTCATATCCATGT
34464624 AAATCAACAG
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 44 1.00
ACGTcount: A:0.24, C:0.20, G:0.14, T:0.41
Consensus pattern (46 bp):
ATTTTGCCATTATTAGGTGTGCCTCTAAACATTCATATCCATGTTG
Found at i:34466890 original size:23 final size:23
Alignment explanation
Indices: 34466839--34466890 Score: 54
Period size: 22 Copynumber: 2.3 Consensus size: 23
34466829 CAGATTAAAC
* *
34466839 CACAATCCTTAGCCCAAACAAAT
1 CACAAACCCTAGCCCAAACAAAT
*
34466862 CA-AAACCCTAGCCCAACCCAAA-
1 CACAAACCCTAGCCCAA-ACAAAT
34466884 CACAAAC
1 CACAAAC
34466891 AAAAGAAAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
22 14 0.58
23 10 0.42
ACGTcount: A:0.46, C:0.40, G:0.04, T:0.10
Consensus pattern (23 bp):
CACAAACCCTAGCCCAAACAAAT
Found at i:34467920 original size:5 final size:5
Alignment explanation
Indices: 34467910--34467937 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
34467900 CGTCCCTCTC
34467910 TTATT TTATT TTATT TTATT TTATT TTA
1 TTATT TTATT TTATT TTATT TTATT TTA
34467938 ATATTATTCA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (5 bp):
TTATT
Done.