Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100714657
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 3970000 characters in sequence are not A, C, G, or T
File 113 of 318
Found at i:36017525 original size:14 final size:14
Alignment explanation
Indices: 36017506--36017535 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
36017496 GCTGAGGTAA
36017506 TTTCAATTTCTGTT
1 TTTCAATTTCTGTT
36017520 TTTCAATTTCTGTT
1 TTTCAATTTCTGTT
36017534 TT
1 TT
36017536 CTTCAAAATC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.13, C:0.13, G:0.07, T:0.67
Consensus pattern (14 bp):
TTTCAATTTCTGTT
Found at i:36017607 original size:54 final size:56
Alignment explanation
Indices: 36017519--36017629 Score: 183
Period size: 54 Copynumber: 2.0 Consensus size: 56
36017509 CAATTTCTGT
*
36017519 TTTTCAATTTCTGTTTTCTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
1 TTTTCAATTTCTGTTTTCTTCAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCC
36017575 TTTT-AATTTCTG-TTT-TTCAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCC
1 TTTTCAATTTCTGTTTTCTTC-AAAATCAACTCATATTGCAAGAGGTGAGTTGAGCC
36017629 T
1 T
36017630 CGAGACACAT
Statistics
Matches: 53, Mismatches: 1, Indels: 4
0.91 0.02 0.07
Matches are distributed among these distances:
53 3 0.06
54 38 0.72
55 8 0.15
56 4 0.08
ACGTcount: A:0.27, C:0.16, G:0.17, T:0.40
Consensus pattern (56 bp):
TTTTCAATTTCTGTTTTCTTCAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCC
Found at i:36020052 original size:24 final size:26
Alignment explanation
Indices: 36020007--36020054 Score: 66
Period size: 24 Copynumber: 1.9 Consensus size: 26
36019997 TTAATACATG
36020007 TTTTATATATGTATATATTATGTATA
1 TTTTATATATGTATATATTATGTATA
36020033 TTTTA-ATAT-TATAT-TATATGTA
1 TTTTATATATGTATATAT-TATGTA
36020055 CGTATTCATA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
23 1 0.05
24 11 0.52
25 4 0.19
26 5 0.24
ACGTcount: A:0.35, C:0.00, G:0.06, T:0.58
Consensus pattern (26 bp):
TTTTATATATGTATATATTATGTATA
Found at i:36020132 original size:21 final size:20
Alignment explanation
Indices: 36020098--36020136 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
36020088 TTTTGTACTA
*
36020098 TATTATTTTATTAGTTTTGC
1 TATTATTGTATTAGTTTTGC
36020118 TATTATTAGTATTAGTTTT
1 TATTATT-GTATTAGTTTT
36020137 AGTTTCAATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.23, C:0.03, G:0.10, T:0.64
Consensus pattern (20 bp):
TATTATTGTATTAGTTTTGC
Found at i:36036960 original size:28 final size:28
Alignment explanation
Indices: 36036929--36037000 Score: 99
Period size: 28 Copynumber: 2.6 Consensus size: 28
36036919 TCGATATTTT
**
36036929 GCACACTAAGTTTCATTCTCAATATCTC
1 GCACACTAAGTGCCATTCTCAATATCTC
*
36036957 GCACACTAAGTGCCATTCTCAATATTTC
1 GCACACTAAGTGCCATTCTCAATATCTC
* *
36036985 GTACACTGAGTGCCAT
1 GCACACTAAGTGCCAT
36037001 ATTTGATTGC
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 39 1.00
ACGTcount: A:0.28, C:0.28, G:0.12, T:0.32
Consensus pattern (28 bp):
GCACACTAAGTGCCATTCTCAATATCTC
Found at i:36040095 original size:18 final size:18
Alignment explanation
Indices: 36040072--36040117 Score: 65
Period size: 18 Copynumber: 2.6 Consensus size: 18
36040062 TTTAGATTTA
* *
36040072 TGGGCCCACATGCCCGTG
1 TGGGCCCACATACCCATG
*
36040090 TGGGCCCACGTACCCATG
1 TGGGCCCACATACCCATG
36040108 TGGGCCCACA
1 TGGGCCCACA
36040118 CGCCTAGATT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.15, C:0.39, G:0.30, T:0.15
Consensus pattern (18 bp):
TGGGCCCACATACCCATG
Found at i:36045117 original size:30 final size:31
Alignment explanation
Indices: 36045083--36045146 Score: 96
Period size: 31 Copynumber: 2.1 Consensus size: 31
36045073 ATTTATTTTA
*
36045083 TTGTTAA-TTTTCTTATTATTTTA-AAGGCAT
1 TTGTTAATTTTTATTATTATTTTAGAA-GCAT
36045113 TTGTTAATTTTTATTATTATTTTAGAAGCAT
1 TTGTTAATTTTTATTATTATTTTAGAAGCAT
36045144 TTG
1 TTG
36045147 CTTGTTAAGT
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
30 7 0.23
31 22 0.71
32 2 0.06
ACGTcount: A:0.27, C:0.05, G:0.11, T:0.58
Consensus pattern (31 bp):
TTGTTAATTTTTATTATTATTTTAGAAGCAT
Found at i:36045558 original size:12 final size:13
Alignment explanation
Indices: 36045530--36045571 Score: 52
Period size: 12 Copynumber: 3.3 Consensus size: 13
36045520 ATATCATGTA
36045530 ATATTAT-ATCTT
1 ATATTATAATCTT
*
36045542 TTATTATAATC-T
1 ATATTATAATCTT
36045554 ATATTATAATACTT
1 ATATTATAAT-CTT
36045568 ATAT
1 ATAT
36045572 ATGAATAAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
12 16 0.64
13 4 0.16
14 5 0.20
ACGTcount: A:0.38, C:0.07, G:0.00, T:0.55
Consensus pattern (13 bp):
ATATTATAATCTT
Found at i:36048796 original size:11 final size:11
Alignment explanation
Indices: 36048780--36048809 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
36048770 TGGTTAAGCA
36048780 TCTGTCTGTAT
1 TCTGTCTGTAT
36048791 TCTGTCTGTAT
1 TCTGTCTGTAT
*
36048802 TCTATCTG
1 TCTGTCTG
36048810 GTCCCGAGTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.10, C:0.20, G:0.17, T:0.53
Consensus pattern (11 bp):
TCTGTCTGTAT
Found at i:36048981 original size:18 final size:18
Alignment explanation
Indices: 36048934--36048988 Score: 58
Period size: 18 Copynumber: 3.0 Consensus size: 18
36048924 TCTCACTAAG
36048934 TTTTATTTTTCCTTTTCTT-
1 TTTTATTTTT-CTTTT-TTC
* *
36048953 TTCTATCTTTCTTTTTTC
1 TTTTATTTTTCTTTTTTC
*
36048971 TTTTATTTTTCCTTTTTC
1 TTTTATTTTTCTTTTTTC
36048989 GAGATTCAAT
Statistics
Matches: 30, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
17 2 0.07
18 20 0.67
19 8 0.27
ACGTcount: A:0.05, C:0.18, G:0.00, T:0.76
Consensus pattern (18 bp):
TTTTATTTTTCTTTTTTC
Found at i:36048985 original size:19 final size:18
Alignment explanation
Indices: 36048934--36048987 Score: 65
Period size: 19 Copynumber: 2.9 Consensus size: 18
36048924 TCTCACTAAG
36048934 TTTTATTTTTCCTTTTCTT
1 TTTTATTTTTCCTTTT-TT
* *
36048953 TTCTATCTTT-CTTTTTT
1 TTTTATTTTTCCTTTTTT
36048970 CTTTTATTTTTCCTTTTT
1 -TTTTATTTTTCCTTTTT
36048988 CGAGATTCAA
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
17 2 0.07
18 13 0.45
19 14 0.48
ACGTcount: A:0.06, C:0.17, G:0.00, T:0.78
Consensus pattern (18 bp):
TTTTATTTTTCCTTTTTT
Found at i:36053230 original size:40 final size:40
Alignment explanation
Indices: 36053184--36053259 Score: 107
Period size: 40 Copynumber: 1.9 Consensus size: 40
36053174 ACACACCATG
* *
36053184 TGGGGATAAAATCGACCCACCCATCCCTGCACACCAATTA
1 TGGGGATAAAATCGACCCACCCAACCCTACACACCAATTA
* * *
36053224 TGGGGATACAATCGATCCATCCAACCCTACACACCA
1 TGGGGATAAAATCGACCCACCCAACCCTACACACCA
36053260 TAAAGTACCA
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 31 1.00
ACGTcount: A:0.33, C:0.36, G:0.14, T:0.17
Consensus pattern (40 bp):
TGGGGATAAAATCGACCCACCCAACCCTACACACCAATTA
Found at i:36062930 original size:25 final size:26
Alignment explanation
Indices: 36062902--36062951 Score: 77
Period size: 25 Copynumber: 2.0 Consensus size: 26
36062892 ATAGTGTATT
36062902 ATTATAAT-TATTATTAATT-TATTAA
1 ATTATAATCTA-TATTAATTATATTAA
36062927 ATTATAATCTATATTAATTATATTA
1 ATTATAATCTATATTAATTATATTA
36062952 TGAGATTTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
25 16 0.70
26 7 0.30
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.54
Consensus pattern (26 bp):
ATTATAATCTATATTAATTATATTAA
Found at i:36065132 original size:22 final size:21
Alignment explanation
Indices: 36065107--36065154 Score: 51
Period size: 23 Copynumber: 2.2 Consensus size: 21
36065097 TTGAGTATAT
36065107 AAATGCATTGGTTGAAATATTG
1 AAATGCATTGGTTGAAAT-TTG
** *
36065129 AAATTGGTTTGGTTGTAATTTG
1 AAA-TGCATTGGTTGAAATTTG
36065151 AAAT
1 AAAT
36065155 TTGCAGGGAA
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
21 1 0.05
22 9 0.41
23 12 0.55
ACGTcount: A:0.33, C:0.02, G:0.23, T:0.42
Consensus pattern (21 bp):
AAATGCATTGGTTGAAATTTG
Found at i:36077445 original size:24 final size:23
Alignment explanation
Indices: 36077393--36077445 Score: 54
Period size: 24 Copynumber: 2.2 Consensus size: 23
36077383 AACAAATTAA
* *
36077393 ATAATGACAATTGTAATAAAATT
1 ATAATGACAAATGTAAAAAAATT
36077416 ATTAAT-ACAAATGTAAAATAAATAT
1 A-TAATGACAAATGTAAAA-AAAT-T
36077441 ATAAT
1 ATAAT
36077446 TACTTATAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
23 11 0.44
24 12 0.48
25 2 0.08
ACGTcount: A:0.57, C:0.04, G:0.06, T:0.34
Consensus pattern (23 bp):
ATAATGACAAATGTAAAAAAATT
Found at i:36079385 original size:24 final size:24
Alignment explanation
Indices: 36079358--36079409 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 24
36079348 TATTTTTTAT
36079358 TAAATAAAAAAC-TTTAAAATATAA
1 TAAATAAAAAACATTTAAAA-ATAA
* * *
36079382 TAAATCAAATACATTTAAAAATAT
1 TAAATAAAAAACATTTAAAAATAA
36079406 TAAA
1 TAAA
36079410 ACAAATATTA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
24 17 0.71
25 7 0.29
ACGTcount: A:0.63, C:0.06, G:0.00, T:0.31
Consensus pattern (24 bp):
TAAATAAAAAACATTTAAAAATAA
Found at i:36079414 original size:24 final size:25
Alignment explanation
Indices: 36079370--36079416 Score: 69
Period size: 24 Copynumber: 1.9 Consensus size: 25
36079360 AATAAAAAAC
*
36079370 TTTAAAATATAATAAATCAAATACA
1 TTTAAAATATAATAAAACAAATACA
*
36079395 TTTAAAA-ATATTAAAACAAATA
1 TTTAAAATATAATAAAACAAATA
36079417 TTAAAACAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 13 0.65
25 7 0.35
ACGTcount: A:0.62, C:0.06, G:0.00, T:0.32
Consensus pattern (25 bp):
TTTAAAATATAATAAAACAAATACA
Found at i:36079415 original size:12 final size:12
Alignment explanation
Indices: 36079400--36079426 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
36079390 ATACATTTAA
36079400 AAATATTAAAAC
1 AAATATTAAAAC
36079412 AAATATTAAAAC
1 AAATATTAAAAC
36079424 AAA
1 AAA
36079427 AAATAAATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.70, C:0.07, G:0.00, T:0.22
Consensus pattern (12 bp):
AAATATTAAAAC
Found at i:36081794 original size:21 final size:20
Alignment explanation
Indices: 36081766--36081805 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
36081756 CAAAACTTGT
36081766 ATAACTATCATCAAACATTC
1 ATAACTATCATCAAACATTC
*
36081786 ATAATCTATCATCAATCATT
1 ATAA-CTATCATCAAACATT
36081806 AAACTACATG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.42, C:0.23, G:0.00, T:0.35
Consensus pattern (20 bp):
ATAACTATCATCAAACATTC
Found at i:36085640 original size:41 final size:42
Alignment explanation
Indices: 36085595--36085743 Score: 137
Period size: 41 Copynumber: 3.6 Consensus size: 42
36085585 CAACTTACCT
* * * *
36085595 GATACAATACACCGGCACAAAGCCTACTAGGCTC-AAGGCTA
1 GATACAACACACCGACACAAAGCCTGCTAGGCTCAAAGCCTA
* *
36085636 GATACAACAC-GCTAGCACAAAGCCTGCTAGG-TACAAAGCCT-
1 GATACAACACACCGA-CACAAAGCCTGCTAGGCT-CAAAGCCTA
* * * * *
36085677 GATATAATACATCGATACCAAGCCTGCTAGGCTCAAAGCCTA
1 GATACAACACACCGACACAAAGCCTGCTAGGCTCAAAGCCTA
*
36085719 -ATACAACACACCGACACGAAGCCTG
1 GATACAACACACCGACACAAAGCCTG
36085744 ATATAATACA
Statistics
Matches: 85, Mismatches: 17, Indels: 12
0.75 0.15 0.11
Matches are distributed among these distances:
40 2 0.02
41 75 0.88
42 8 0.09
ACGTcount: A:0.37, C:0.30, G:0.18, T:0.15
Consensus pattern (42 bp):
GATACAACACACCGACACAAAGCCTGCTAGGCTCAAAGCCTA
Found at i:36085753 original size:66 final size:66
Alignment explanation
Indices: 36085668--36085809 Score: 185
Period size: 66 Copynumber: 2.2 Consensus size: 66
36085658 CCTGCTAGGT
* * * * * *
36085668 ACAAAGCCTGATATAATACATCGATACCAAGCCTGCTAGGCTCAAAGCCTAATACAACACACCGA
1 ACAAAGCCTGATATAATACACCGACACAAAGCCTGCGAGGCTAAAAGCCTAATAAAACACACCGA
36085733 C
66 C
* * * * *
36085734 ACGAAGCCTGATATAATACACCGGCACAAAGCCTGGGAGGCTAAAAGCCTGATAAAACACACCGG
1 ACAAAGCCTGATATAATACACCGACACAAAGCCTGCGAGGCTAAAAGCCTAATAAAACACACCGA
36085799 C
66 C
36085800 ACAAAGCCTG
1 ACAAAGCCTG
36085810 GGAGGCTAAA
Statistics
Matches: 64, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
66 64 1.00
ACGTcount: A:0.39, C:0.29, G:0.18, T:0.14
Consensus pattern (66 bp):
ACAAAGCCTGATATAATACACCGACACAAAGCCTGCGAGGCTAAAAGCCTAATAAAACACACCGA
C
Found at i:36085768 original size:25 final size:25
Alignment explanation
Indices: 36085710--36085768 Score: 73
Period size: 25 Copynumber: 2.4 Consensus size: 25
36085700 CTGCTAGGCT
*
36085710 CAAAGCCTAATACAACACACCGACA
1 CAAAGCCTGATACAACACACCGACA
* * * *
36085735 CGAAGCCTGATATAATACACCGGCA
1 CAAAGCCTGATACAACACACCGACA
36085760 CAAAGCCTG
1 CAAAGCCTG
36085769 GGAGGCTAAA
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.41, C:0.32, G:0.15, T:0.12
Consensus pattern (25 bp):
CAAAGCCTGATACAACACACCGACA
Found at i:36085782 original size:41 final size:41
Alignment explanation
Indices: 36085737--36085888 Score: 216
Period size: 41 Copynumber: 3.7 Consensus size: 41
36085727 CACCGACACG
* *
36085737 AAGCCTGATATAATACACCGGCACAAAGCCTGGGAGGCTAA
1 AAGCCTGATAAAACACACCGGCACAAAGCCTGGGAGGCTAA
36085778 AAGCCTGATAAAACACACCGGCACAAAGCCTGGGAGGCTAA
1 AAGCCTGATAAAACACACCGGCACAAAGCCTGGGAGGCTAA
* **
36085819 AAGCCTGATAAAACACACCGGCACAAAGCTTGCTAGGC-ACA
1 AAGCCTGATAAAACACACCGGCACAAAGCCTGGGAGGCTA-A
* * *
36085860 AAGCCTGATATAATACACCGGCACGAAGC
1 AAGCCTGATAAAACACACCGGCACAAAGC
36085889 TTGCTGGACT
Statistics
Matches: 102, Mismatches: 8, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
40 1 0.01
41 101 0.99
ACGTcount: A:0.38, C:0.27, G:0.22, T:0.12
Consensus pattern (41 bp):
AAGCCTGATAAAACACACCGGCACAAAGCCTGGGAGGCTAA
Found at i:36085836 original size:107 final size:107
Alignment explanation
Indices: 36085650--36085847 Score: 245
Period size: 107 Copynumber: 1.9 Consensus size: 107
36085640 CAACACGCTA
* * * * * * * *
36085650 GCACAAAGCCTGCTAGGTACAAAGCCTGATATAATACATCGATACCAAGCCTGCTAGGCTCAAAG
1 GCACAAAGCCTGCGAGGTACAAAGCCTGATAAAACACACCGACACAAAGCCTGCGAGGCTAAAAG
* *
36085715 CCTAATACAACACACCGACACGAAGCCTGATATAATACACCG
66 CCTAATAAAACACACCGACACAAAGCCTGATATAATACACCG
* * *
36085757 GCACAAAGCCTGGGAGGCTA-AAAGCCTGATAAAACACACCGGCACAAAGCCTGGGAGGCTAAAA
1 GCACAAAGCCTGCGAGG-TACAAAGCCTGATAAAACACACCGACACAAAGCCTGCGAGGCTAAAA
* *
36085821 GCCTGATAAAACACACCGGCACAAAGC
65 GCCTAATAAAACACACCGACACAAAGC
36085848 TTGCTAGGCA
Statistics
Matches: 75, Mismatches: 15, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
107 73 0.97
108 2 0.03
ACGTcount: A:0.38, C:0.28, G:0.20, T:0.13
Consensus pattern (107 bp):
GCACAAAGCCTGCGAGGTACAAAGCCTGATAAAACACACCGACACAAAGCCTGCGAGGCTAAAAG
CCTAATAAAACACACCGACACAAAGCCTGATATAATACACCG
Found at i:36085862 original size:148 final size:148
Alignment explanation
Indices: 36085592--36085888 Score: 346
Period size: 148 Copynumber: 2.0 Consensus size: 148
36085582 GTACAACTTA
* * * * * *
36085592 CCTGATACAATACACCGGCACAAAGCCTACTAGGCTCAAGGCTAGATACAACACGCTAGCACAAA
1 CCTGATACAATACACCGGCACAAAGCCTACGAGGCTAAAGCCTAGATAAAACACACCAGCACAAA
* * * * * * *
36085657 GCCTGCTAGGTACAAAGCCTGATATAATACATCGATACCAAGCCTGCTAGGCTCAAAGCCTAATA
66 GCCTGCGAGGTACAAAGCCTGATAAAACACACCGACACAAAGCCTGCTAGGCACAAAGCCTAATA
36085722 CAACACACCGACACGAAG
131 CAACACACCGACACGAAG
* ** *
36085740 CCTGATATAATACACCGGCACAAAGCCTGGGAGGCTAAAAGCCT-GATAAAACACACCGGCACAA
1 CCTGATACAATACACCGGCACAAAGCCTACGAGGCT-AAAGCCTAGATAAAACACACCAGCACAA
* * * *
36085804 AGCCTGGGAGGCTA-AAAGCCTGATAAAACACACCGGCACAAAGCTTGCTAGGCACAAAGCCTGA
65 AGCCTGCGAGG-TACAAAGCCTGATAAAACACACCGACACAAAGCCTGCTAGGCACAAAGCCTAA
* * *
36085868 TATAATACACCGGCACGAAG
129 TACAACACACCGACACGAAG
36085888 C
1 C
36085889 TTGCTGGACT
Statistics
Matches: 123, Mismatches: 24, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
148 116 0.94
149 7 0.06
ACGTcount: A:0.37, C:0.29, G:0.20, T:0.14
Consensus pattern (148 bp):
CCTGATACAATACACCGGCACAAAGCCTACGAGGCTAAAGCCTAGATAAAACACACCAGCACAAA
GCCTGCGAGGTACAAAGCCTGATAAAACACACCGACACAAAGCCTGCTAGGCACAAAGCCTAATA
CAACACACCGACACGAAG
Found at i:36108870 original size:21 final size:20
Alignment explanation
Indices: 36108822--36108874 Score: 70
Period size: 21 Copynumber: 2.5 Consensus size: 20
36108812 TAATTATTAT
36108822 TAAATATAATTTAATAAAAA
1 TAAATATAATTTAATAAAAA
*
36108842 TAAGATATAATTTAATAATAAT
1 TAA-ATATAATTTAATAA-AAA
*
36108864 TTAATATAATT
1 TAAATATAATT
36108875 ATTTTTATAT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
20 3 0.10
21 22 0.76
22 4 0.14
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.42
Consensus pattern (20 bp):
TAAATATAATTTAATAAAAA
Found at i:36108874 original size:10 final size:10
Alignment explanation
Indices: 36108791--36108874 Score: 61
Period size: 10 Copynumber: 8.6 Consensus size: 10
36108781 AGGTACTTGA
36108791 ATAA-TTAAT
1 ATAATTTAAT
*
36108800 CATAATTTAGT
1 -ATAATTTAAT
36108811 ATAA-TT-AT
1 ATAATTTAAT
*
36108819 -T-ATTAAAT
1 ATAATTTAAT
36108827 ATAATTTAAT
1 ATAATTTAAT
* * *
36108837 AAAAATAAGAT
1 ATAATTTA-AT
36108848 ATAATTTAAT
1 ATAATTTAAT
36108858 AATAATTTAAT
1 -ATAATTTAAT
36108869 ATAATT
1 ATAATT
36108875 ATTTTTATAT
Statistics
Matches: 57, Mismatches: 10, Indels: 14
0.70 0.12 0.17
Matches are distributed among these distances:
6 1 0.02
7 2 0.04
8 3 0.05
9 3 0.05
10 27 0.47
11 21 0.37
ACGTcount: A:0.52, C:0.01, G:0.02, T:0.44
Consensus pattern (10 bp):
ATAATTTAAT
Found at i:36108900 original size:58 final size:57
Alignment explanation
Indices: 36108791--36108901 Score: 143
Period size: 58 Copynumber: 1.9 Consensus size: 57
36108781 AGGTACTTGA
* * *
36108791 ATAATTAATCATAATTTAGTATAATTATTATTAAATATAATTTAATAAAAATAAGAT
1 ATAATTAATAATAATTTAATATAATTATTATTAAATATAAATTAATAAAAATAAGAT
* * *
36108848 ATAATTTAATAATAATTTAATATAATTATTTTTATAT-TAAATTATATTAAAATA
1 ATAA-TTAATAATAATTTAATATAATTATTATTAAATATAAATTA-ATAAAAATA
36108902 TTTTATTTTA
Statistics
Matches: 46, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
57 10 0.22
58 36 0.78
ACGTcount: A:0.51, C:0.01, G:0.02, T:0.46
Consensus pattern (57 bp):
ATAATTAATAATAATTTAATATAATTATTATTAAATATAAATTAATAAAAATAAGAT
Found at i:36108912 original size:25 final size:25
Alignment explanation
Indices: 36108877--36108965 Score: 125
Period size: 25 Copynumber: 3.8 Consensus size: 25
36108867 ATATAATTAT
36108877 TTTTATATTAAATTATATTAAAATA
1 TTTTATATTAAATTATATTAAAATA
*
36108902 TTTTATTTTAAATTATATT--AA-A
1 TTTTATATTAAATTATATTAAAATA
36108924 --TTATATTAAATTATATTAAAATA
1 TTTTATATTAAATTATATTAAAATA
*
36108947 TTTTATTTTAAATTATATT
1 TTTTATATTAAATTATATT
36108966 TTGAAATTAA
Statistics
Matches: 56, Mismatches: 3, Indels: 10
0.81 0.04 0.14
Matches are distributed among these distances:
20 16 0.29
22 3 0.05
23 3 0.05
25 34 0.61
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (25 bp):
TTTTATATTAAATTATATTAAAATA
Found at i:36108928 original size:45 final size:45
Alignment explanation
Indices: 36108879--36108965 Score: 174
Period size: 45 Copynumber: 1.9 Consensus size: 45
36108869 ATAATTATTT
36108879 TTATATTAAATTATATTAAAATATTTTATTTTAAATTATATTAAA
1 TTATATTAAATTATATTAAAATATTTTATTTTAAATTATATTAAA
36108924 TTATATTAAATTATATTAAAATATTTTATTTTAAATTATATT
1 TTATATTAAATTATATTAAAATATTTTATTTTAAATTATATT
36108966 TTGAAATTAA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (45 bp):
TTATATTAAATTATATTAAAATATTTTATTTTAAATTATATTAAA
Found at i:36108961 original size:20 final size:20
Alignment explanation
Indices: 36108893--36108961 Score: 59
Period size: 20 Copynumber: 3.2 Consensus size: 20
36108883 ATTAAATTAT
36108893 ATTAAAATATTTTATTTTAA
1 ATTAAAATATTTTATTTTAA
* *
36108913 ATTATATTAA-ATTATATTAAATTAT
1 ATTA-A--AATATTTTATT---TTAA
36108938 ATTAAAATATTTTATTTTAA
1 ATTAAAATATTTTATTTTAA
36108958 ATTA
1 ATTA
36108962 TATTTTGAAA
Statistics
Matches: 38, Mismatches: 4, Indels: 14
0.68 0.07 0.25
Matches are distributed among these distances:
20 11 0.29
21 1 0.03
22 9 0.24
23 9 0.24
24 1 0.03
25 7 0.18
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (20 bp):
ATTAAAATATTTTATTTTAA
Found at i:36108962 original size:10 final size:10
Alignment explanation
Indices: 36108879--36108943 Score: 86
Period size: 10 Copynumber: 7.0 Consensus size: 10
36108869 ATAATTATTT
36108879 TTATATTAAA
1 TTATATTAAA
36108889 TTATATTAAA
1 TTATATTAAA
36108899 --ATATT---
1 TTATATTAAA
*
36108904 TTATTTTAAA
1 TTATATTAAA
36108914 TTATATTAAA
1 TTATATTAAA
36108924 TTATATTAAA
1 TTATATTAAA
36108934 TTATATTAAA
1 TTATATTAAA
36108944 ATATTTTATT
Statistics
Matches: 48, Mismatches: 2, Indels: 10
0.80 0.03 0.17
Matches are distributed among these distances:
7 4 0.08
8 5 0.10
10 39 0.81
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (10 bp):
TTATATTAAA
Found at i:36108972 original size:13 final size:12
Alignment explanation
Indices: 36108884--36108974 Score: 73
Period size: 13 Copynumber: 7.7 Consensus size: 12
36108874 TATTTTTATA
36108884 TTAAATTATATT
1 TTAAATTATATT
** *
36108896 AAAATATTTTATT
1 TTAA-ATTATATT
36108909 TTAAATTATA--
1 TTAAATTATATT
36108919 TTAAATTATA--
1 TTAAATTATATT
36108929 TTAAATTATATT
1 TTAAATTATATT
** *
36108941 AAAATATTTTATT
1 TTAA-ATTATATT
36108954 TTAAATTATATT
1 TTAAATTATATT
36108966 TTGAAATTA
1 TT-AAATTA
36108975 AATATTTTAT
Statistics
Matches: 62, Mismatches: 12, Indels: 9
0.75 0.14 0.11
Matches are distributed among these distances:
10 20 0.32
12 18 0.29
13 24 0.39
ACGTcount: A:0.45, C:0.00, G:0.01, T:0.54
Consensus pattern (12 bp):
TTAAATTATATT
Found at i:36111910 original size:13 final size:13
Alignment explanation
Indices: 36111892--36111928 Score: 67
Period size: 13 Copynumber: 2.9 Consensus size: 13
36111882 GTCATTGTAC
36111892 TACCACCATCTGG
1 TACCACCATCTGG
36111905 TACCACCATCTGG
1 TACCACCATCTGG
36111918 TACCACC-TCTG
1 TACCACCATCTG
36111929 TAACATCCCC
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
12 4 0.17
13 20 0.83
ACGTcount: A:0.22, C:0.41, G:0.14, T:0.24
Consensus pattern (13 bp):
TACCACCATCTGG
Found at i:36113135 original size:25 final size:25
Alignment explanation
Indices: 36113107--36113154 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
36113097 CAATATGCAA
* *
36113107 TTCAATTCCACAATCCAATTTCACT
1 TTCAATTCAAAAATCCAATTTCACT
* *
36113132 TTCACTTCAAAAATCCACTTTCA
1 TTCAATTCAAAAATCCAATTTCA
36113155 AAATCAAATA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.33, C:0.31, G:0.00, T:0.35
Consensus pattern (25 bp):
TTCAATTCAAAAATCCAATTTCACT
Found at i:36113537 original size:11 final size:12
Alignment explanation
Indices: 36113523--36113554 Score: 50
Period size: 11 Copynumber: 2.8 Consensus size: 12
36113513 TTAGTTTCTC
36113523 CTTT-TTCTTTT
1 CTTTCTTCTTTT
36113534 CTTTCTTC-TTT
1 CTTTCTTCTTTT
36113545 CTTTCTTCTT
1 CTTTCTTCTT
36113555 ATTTCCGTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
11 15 0.79
12 4 0.21
ACGTcount: A:0.00, C:0.25, G:0.00, T:0.75
Consensus pattern (12 bp):
CTTTCTTCTTTT
Found at i:36115437 original size:30 final size:30
Alignment explanation
Indices: 36115402--36115460 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
36115392 TGAATCAAAT
* *
36115402 TTTAATAATAAATTAATATATTTAT-TTAAA
1 TTTAATAATAAA-AAATATATATATATTAAA
*
36115432 TTTAATTATAAAAAATATATATATATTAA
1 TTTAATAATAAAAAATATATATATATTAA
36115461 TATAAATTTT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 10 0.40
30 15 0.60
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (30 bp):
TTTAATAATAAAAAATATATATATATTAAA
Found at i:36116713 original size:6 final size:6
Alignment explanation
Indices: 36116704--36116744 Score: 59
Period size: 6 Copynumber: 7.2 Consensus size: 6
36116694 TTTAAATTTT
*
36116704 ATATTA ATATTA ATATTA ATATTA A-ATT- ATATTC ATATTA A
1 ATATTA ATATTA ATATTA ATATTA ATATTA ATATTA ATATTA A
36116745 ATAAAATAAA
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
4 1 0.03
5 6 0.19
6 25 0.78
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (6 bp):
ATATTA
Found at i:36116741 original size:16 final size:17
Alignment explanation
Indices: 36116704--36116746 Score: 61
Period size: 16 Copynumber: 2.5 Consensus size: 17
36116694 TTTAAATTTT
36116704 ATATTAATATTAATATTA
1 ATATTAA-ATTAATATTA
*
36116722 ATATTAAATT-ATATTC
1 ATATTAAATTAATATTA
36116738 ATATTAAAT
1 ATATTAAAT
36116747 AAAATAAAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
16 14 0.58
17 3 0.12
18 7 0.29
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (17 bp):
ATATTAAATTAATATTA
Found at i:36116783 original size:6 final size:6
Alignment explanation
Indices: 36116776--36116810 Score: 61
Period size: 6 Copynumber: 5.8 Consensus size: 6
36116766 CCCTCCTTCT
*
36116776 CCCCCT CCCCCA CCCCCA CCCCCA CCCCCA CCCCC
1 CCCCCA CCCCCA CCCCCA CCCCCA CCCCCA CCCCC
36116811 TTCCATCCAT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.11, C:0.86, G:0.00, T:0.03
Consensus pattern (6 bp):
CCCCCA
Found at i:36117445 original size:25 final size:24
Alignment explanation
Indices: 36117413--36117461 Score: 89
Period size: 25 Copynumber: 2.0 Consensus size: 24
36117403 CGGAGGATTT
36117413 TTATTTTATTTAATATTAATATAA
1 TTATTTTATTTAATATTAATATAA
36117437 TTATATTTATTTAATATTAATATAA
1 TTAT-TTTATTTAATATTAATATAA
36117462 ATTTTAAATT
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
24 4 0.17
25 20 0.83
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (24 bp):
TTATTTTATTTAATATTAATATAA
Found at i:36123394 original size:19 final size:20
Alignment explanation
Indices: 36123356--36123409 Score: 67
Period size: 19 Copynumber: 2.8 Consensus size: 20
36123346 AACGCCTCTT
36123356 TTTGCATT-CATTTCATTCA
1 TTTGCATTACATTTCATTCA
36123375 TTTGCATTACATTTCA-TCA
1 TTTGCATTACATTTCATTCA
* * *
36123394 TATGCGTTAAATTTCA
1 TTTGCATTACATTTCA
36123410 CAAAAAGACC
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
19 24 0.77
20 7 0.23
ACGTcount: A:0.26, C:0.19, G:0.07, T:0.48
Consensus pattern (20 bp):
TTTGCATTACATTTCATTCA
Found at i:36123578 original size:24 final size:24
Alignment explanation
Indices: 36123534--36123588 Score: 67
Period size: 24 Copynumber: 2.3 Consensus size: 24
36123524 TAGAAAGATT
*
36123534 AGAACAGATGCAAAAGGAAATACA
1 AGAACAGATGCAAAAGCAAATACA
* *
36123558 AGAACAGATGCAGACA-CAAATGCA
1 AGAACAGATGCA-AAAGCAAATACA
36123582 AGAACAG
1 AGAACAG
36123589 TTGGCAAAGA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
24 25 0.93
25 2 0.07
ACGTcount: A:0.55, C:0.16, G:0.22, T:0.07
Consensus pattern (24 bp):
AGAACAGATGCAAAAGCAAATACA
Found at i:36123870 original size:83 final size:83
Alignment explanation
Indices: 36123723--36123879 Score: 242
Period size: 83 Copynumber: 1.9 Consensus size: 83
36123713 GGAATGACAA
*** * *
36123723 TGAAGATCCTCTCTACCCCCTGGTTTCACCCCGGTAAATGTTCAAACGCAACACGAGATGCACAC
1 TGAAGATCCTCTCTACCCCCTGGTTTCACCCCAACAAATGTTCAAACGCAACACAAGATACACAC
36123788 GCAAAGGTCATCCATTTC
66 GCAAAGGTCATCCATTTC
* *
36123806 TGAAGATCCTCTCTACCCCCTGGTTTTACCCCAACAAATGTTCAAACGCAACCCAAGATACACAC
1 TGAAGATCCTCTCTACCCCCTGGTTTCACCCCAACAAATGTTCAAACGCAACACAAGATACACAC
*
36123871 GCGAAGGTC
66 GCAAAGGTC
36123880 GTCTATTACA
Statistics
Matches: 66, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
83 66 1.00
ACGTcount: A:0.29, C:0.33, G:0.16, T:0.22
Consensus pattern (83 bp):
TGAAGATCCTCTCTACCCCCTGGTTTCACCCCAACAAATGTTCAAACGCAACACAAGATACACAC
GCAAAGGTCATCCATTTC
Found at i:36131658 original size:45 final size:43
Alignment explanation
Indices: 36131605--36131811 Score: 141
Period size: 45 Copynumber: 4.7 Consensus size: 43
36131595 ATGAATTTAC
*
36131605 AGATCTTATCTCCATGAGGCAGCAATGGAGCAGATCGAAGACGG
1 AGATCTTATCTCCATGAGGTAGCAATGGAGCAGATCGAAGAC-G
** * * * ** *
36131649 AGAATCTTATCTCTTTGAAGTAGTAAGGGAGCAGATTTAAGCCACT
1 AG-ATCTTATCTCCATGAGGTAGCAATGGAGCAGATCGAAG--ACG
* * * * * *
36131695 AG-CCTTATCTCCCTGA-GCAGCAATAGAGCA-AGCTGAAGATTG
1 AGATCTTATCTCCATGAGGTAGCAATGGAGCAGATC-GAAGA-CG
* *
36131737 TAGATCTTATCTCCATAAGGTAGCAATGGAGCAGATCGAGGACG
1 -AGATCTTATCTCCATGAGGTAGCAATGGAGCAGATCGAAGACG
* *
36131781 ACAAATCTTATCTCCCTGAGGTAGCAATGGA
1 --AGATCTTATCTCCATGAGGTAGCAATGGA
36131812 TCATATTCAA
Statistics
Matches: 120, Mismatches: 33, Indels: 19
0.70 0.19 0.11
Matches are distributed among these distances:
41 1 0.01
42 1 0.01
43 15 0.12
44 25 0.21
45 72 0.60
46 4 0.03
47 2 0.02
ACGTcount: A:0.32, C:0.20, G:0.25, T:0.24
Consensus pattern (43 bp):
AGATCTTATCTCCATGAGGTAGCAATGGAGCAGATCGAAGACG
Found at i:36131843 original size:133 final size:133
Alignment explanation
Indices: 36131605--36131971 Score: 484
Period size: 133 Copynumber: 2.8 Consensus size: 133
36131595 ATGAATTTAC
* * * **
36131605 AGATCTTATCTCCATGAGGCAGCAATGGAGCAGATCGAAGACGGA-GAATCTTATCTCTTTGAAG
1 AGATCTTATCTCCATAAGGTAGCAATGGAGCAGATCGAGGAC-GACGAATCTTATCTCCCTGAAG
* *
36131669 TAGTAAGGGAGCAGATTTAAGCCACTAGCCTTATCTCCCTGAGCAGCAATAGAGCAAGCTGAAGA
65 TAGCAAGGGAGCAGATTCAAGCCACTAGCCTTATCTCCCTGAGCAGCAATAGAGCAAGCTGAAGA
36131734 TTGT
130 TTGT
* *
36131738 AGATCTTATCTCCATAAGGTAGCAATGGAGCAGATCGAGGACGACAAATCTTATCTCCCTGAGGT
1 AGATCTTATCTCCATAAGGTAGCAATGGAGCAGATCGAGGACGACGAATCTTATCTCCCTGAAGT
* * * * * * * *
36131803 AGCAATGGATCATATTCAAGCCACTAGCCTTGTCTCCCTGAGCAGCAGTGGAGTAGGCTGAAGAT
66 AGCAAGGGAGCAGATTCAAGCCACTAGCCTTATCTCCCTGAGCAGCAATAGAGCAAGCTGAAGAT
36131868 TGT
131 TGT
* * * *
36131871 AGATCTTATCTCTATAAGGTAGTAATGGAGCAAATCGAGGACGACGAATCTTATCTTCCTGAAGT
1 AGATCTTATCTCCATAAGGTAGCAATGGAGCAGATCGAGGACGACGAATCTTATCTCCCTGAAGT
* * * * *
36131936 AGCAAGGCAGCAGATTTAAACCACAAGTCTTATCTC
66 AGCAAGGGAGCAGATTCAAGCCACTAGCCTTATCTC
36131972 TCTAAAGTTG
Statistics
Matches: 201, Mismatches: 32, Indels: 2
0.86 0.14 0.01
Matches are distributed among these distances:
132 2 0.01
133 199 0.99
ACGTcount: A:0.31, C:0.20, G:0.23, T:0.25
Consensus pattern (133 bp):
AGATCTTATCTCCATAAGGTAGCAATGGAGCAGATCGAGGACGACGAATCTTATCTCCCTGAAGT
AGCAAGGGAGCAGATTCAAGCCACTAGCCTTATCTCCCTGAGCAGCAATAGAGCAAGCTGAAGAT
TGT
Found at i:36131992 original size:44 final size:44
Alignment explanation
Indices: 36131919--36132074 Score: 133
Period size: 44 Copynumber: 3.5 Consensus size: 44
36131909 GGACGACGAA
* * *
36131919 TCTTATCT-TCCTGAAGTAGCAAG-GCAGCAGATTTAAACCACAAG
1 TCTTATCTCT-CTGAAGTTGC-AGTGAAGCAGATTGAAACCACAAG
* * *
36131963 TCTTATCTCTCTAAAGTTGCAGTGAAGCAGACTGAAGA-TAGC-AG
1 TCTTATCTCTCTGAAGTTGCAGTGAAGCAGATTGAA-ACCA-CAAG
* * * *
36132007 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATCGAAGCCACAA-
1 -TCTTATCTCTCTGAAGTTGCAGTGAAGCAGATTGAAACCACAAG
36132051 TCCTTATCTCTCTGAAGTTGCAGT
1 T-CTTATCTCTCTGAAGTTGCAGT
36132075 AGAGTAGTAT
Statistics
Matches: 90, Mismatches: 14, Indels: 16
0.75 0.12 0.13
Matches are distributed among these distances:
43 3 0.03
44 51 0.57
45 36 0.40
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.28
Consensus pattern (44 bp):
TCTTATCTCTCTGAAGTTGCAGTGAAGCAGATTGAAACCACAAG
Found at i:36137752 original size:33 final size:33
Alignment explanation
Indices: 36137710--36137776 Score: 116
Period size: 33 Copynumber: 2.0 Consensus size: 33
36137700 TAAATATTGT
*
36137710 TAATCGTATTTGATTAAGTTTGTCTGAGAAATC
1 TAATCGTATTTGATTAAGTTTGTATGAGAAATC
*
36137743 TAATCGTATTTGGTTAAGTTTGTATGAGAAATC
1 TAATCGTATTTGATTAAGTTTGTATGAGAAATC
36137776 T
1 T
36137777 TACTTTTATT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.30, C:0.07, G:0.19, T:0.43
Consensus pattern (33 bp):
TAATCGTATTTGATTAAGTTTGTATGAGAAATC
Found at i:36153856 original size:21 final size:21
Alignment explanation
Indices: 36153817--36153863 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 21
36153807 GGTAAAAAAT
36153817 GCCCGTGTGGAGGGAGGCACAC
1 GCCCGTGTGGA-GGAGGCACAC
*
36153839 GCCCGTGTGGCA-GAGGCACAT
1 GCCCGTGTGG-AGGAGGCACAC
36153860 GCCC
1 GCCC
36153864 ATATGAACCG
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
21 12 0.52
22 10 0.43
23 1 0.04
ACGTcount: A:0.17, C:0.32, G:0.40, T:0.11
Consensus pattern (21 bp):
GCCCGTGTGGAGGAGGCACAC
Found at i:36158185 original size:37 final size:37
Alignment explanation
Indices: 36158112--36158186 Score: 96
Period size: 37 Copynumber: 2.0 Consensus size: 37
36158102 TGAACAAAAA
* * *
36158112 AAAATTATGAAAAGATAAAAGACATATATATATGTAC
1 AAAATTATGAAAAGATAAAAAAAACATATATATGTAC
* * *
36158149 AAAATTATGAAAATATAAAAAAAACATATGTGTGTAC
1 AAAATTATGAAAAGATAAAAAAAACATATATATGTAC
36158186 A
1 A
36158187 CATGAATTAT
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
37 32 1.00
ACGTcount: A:0.57, C:0.05, G:0.11, T:0.27
Consensus pattern (37 bp):
AAAATTATGAAAAGATAAAAAAAACATATATATGTAC
Found at i:36158431 original size:13 final size:13
Alignment explanation
Indices: 36158413--36158437 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
36158403 CATATTATAA
36158413 TATATATATAAAC
1 TATATATATAAAC
36158426 TATATATATAAA
1 TATATATATAAA
36158438 AAAATATGGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.04, G:0.00, T:0.40
Consensus pattern (13 bp):
TATATATATAAAC
Found at i:36158560 original size:3 final size:3
Alignment explanation
Indices: 36158544--36158614 Score: 85
Period size: 3 Copynumber: 24.3 Consensus size: 3
36158534 GTATGTAAGT
* *
36158544 ATA ATA A-A AAA ATA ATA ATA ATA GTA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
*
36158591 ATA ATA ACT- ATA TTA ATA A-A ATA A
1 ATA ATA A-TA ATA ATA ATA ATA ATA A
36158615 ACTAAAAACT
Statistics
Matches: 59, Mismatches: 5, Indels: 8
0.82 0.07 0.11
Matches are distributed among these distances:
2 5 0.08
3 53 0.90
4 1 0.02
ACGTcount: A:0.66, C:0.01, G:0.01, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:36160056 original size:44 final size:44
Alignment explanation
Indices: 36159928--36160408 Score: 456
Period size: 44 Copynumber: 10.9 Consensus size: 44
36159918 CGCCATCGTC
* * *
36159928 GATCTGCTTTCTTCGATCTACTTCACCACCAGTATGGGAAGACAA
1 GATCTGCTATCTTCGATCTACTTCA-CACCAATATAGGAAGACAA
* * * * *
36159973 GATCTG-TATCTTGGATCCACTTC-CTATCAATATAGGAAGATAG
1 GATCTGCTATCTTCGATCTACTTCAC-ACCAATATAGGAAGACAA
* * * *
36160016 GATCTGCTACCTTCGATCTACTTCACGCCAATACATGAAGACAA
1 GATCTGCTATCTTCGATCTACTTCACACCAATATAGGAAGACAA
* * * * *
36160060 GATCTGCTTTCTGCGATCCACTTCGCCACCAATATGGGAAGACAA
1 GATCTGCTATCTTCGATCTACTTC-ACACCAATATAGGAAGACAA
* * * *
36160105 GATCTGC-ATCTTCGACCCACTTC-CTACCAATATAGGAAGATAG
1 GATCTGCTATCTTCGATCTACTTCAC-ACCAATATAGGAAGACAA
* * * * *
36160148 GATCTACTACCTTCGATCTACTTCACGCCAATACATGAAGACAA
1 GATCTGCTATCTTCGATCTACTTCACACCAATATAGGAAGACAA
* * *
36160192 GATCTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGACAA
1 GATCTGCTATCTTCGATCTACTTC-ACACCAATATAGGAAGACAA
* * * *
36160237 GATCTGC-ATCTTCGACCCACTTC-CTACCAATATAGGAAGATAG
1 GATCTGCTATCTTCGATCTACTTCAC-ACCAATATAGGAAGACAA
* * * *
36160280 GATCTGCTACCTTCGATCTACTTCACGCCAATACATGAAGACAA
1 GATCTGCTATCTTCGATCTACTTCACACCAATATAGGAAGACAA
* * *
36160324 GATCTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGACAA
1 GATCTGCTATCTTCGATCTACTTC-ACACCAATATAGGAAGACAA
* *
36160369 GATCTGC-ATCTTTGATCCACTTC-CTACCAATATAGGAAGA
1 GATCTGCTATCTTCGATCTACTTCAC-ACCAATATAGGAAGA
36160409 TAGGACCTAT
Statistics
Matches: 349, Mismatches: 74, Indels: 28
0.77 0.16 0.06
Matches are distributed among these distances:
42 4 0.01
43 76 0.22
44 194 0.56
45 75 0.21
ACGTcount: A:0.30, C:0.27, G:0.16, T:0.27
Consensus pattern (44 bp):
GATCTGCTATCTTCGATCTACTTCACACCAATATAGGAAGACAA
Found at i:36160165 original size:132 final size:132
Alignment explanation
Indices: 36159928--36160413 Score: 873
Period size: 132 Copynumber: 3.7 Consensus size: 132
36159918 CGCCATCGTC
* * * * *
36159928 GATCTGCTTTCTTCGATCTACTTCACCACCAGTATGGGAAGACAAGATCTGTATCTTGGATCCAC
1 GATCTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGACCCAC
*
36159993 TTCCTATCAATATAGGAAGATAGGATCTGCTACCTTCGATCTACTTCACGCCAATACATGAAGAC
66 TTCCTACCAATATAGGAAGATAGGATCTGCTACCTTCGATCTACTTCACGCCAATACATGAAGAC
36160058 AA
131 AA
* *
36160060 GATCTGCTTTCTGCGATCCACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGACCCAC
1 GATCTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGACCCAC
*
36160125 TTCCTACCAATATAGGAAGATAGGATCTACTACCTTCGATCTACTTCACGCCAATACATGAAGAC
66 TTCCTACCAATATAGGAAGATAGGATCTGCTACCTTCGATCTACTTCACGCCAATACATGAAGAC
36160190 AA
131 AA
36160192 GATCTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGACCCAC
1 GATCTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGACCCAC
36160257 TTCCTACCAATATAGGAAGATAGGATCTGCTACCTTCGATCTACTTCACGCCAATACATGAAGAC
66 TTCCTACCAATATAGGAAGATAGGATCTGCTACCTTCGATCTACTTCACGCCAATACATGAAGAC
36160322 AA
131 AA
* *
36160324 GATCTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTTGATCCAC
1 GATCTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGACCCAC
36160389 TTCCTACCAATATAGGAAGATAGGA
66 TTCCTACCAATATAGGAAGATAGGA
36160414 CCTATTTATG
Statistics
Matches: 340, Mismatches: 14, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
132 340 1.00
ACGTcount: A:0.30, C:0.27, G:0.16, T:0.27
Consensus pattern (132 bp):
GATCTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGACCCAC
TTCCTACCAATATAGGAAGATAGGATCTGCTACCTTCGATCTACTTCACGCCAATACATGAAGAC
AA
Found at i:36165818 original size:266 final size:266
Alignment explanation
Indices: 36165344--36165875 Score: 974
Period size: 266 Copynumber: 2.0 Consensus size: 266
36165334 GCGGATACAT
* *
36165344 ATACGGCTTTGCCCTCATATGCGGAGACATTCGATCATTTTCTTCGTTCGAGCGTTAAGATAAGT
1 ATACGGCTTTGCCCTCATATGCGGAGACATTCGACCATTTTCTTCATTCGAGCGTTAAGATAAGT
* * *
36165409 CTCACGAATTCTTCAAAAGGGACGTATCTTATATCTCCTTTTTACTCAATCCGGGTCGTGACTCG
66 CTCACGAACTCTTCAAAAGGGACGTATCTTATATCTCATTTTTACTCAATCCGGGCCGTGACTCG
*
36165474 TTGCTCACTAAACCTCATGGTGCTCATTGGCTTCTCTTTAAAAAAAGTTCAGCGGCTCTCGAATA
131 TTGCTCACTAAACCTCATGGTGCTCATTGGCTTCTCTTTAAAAAAAGTTCAGCGGCTCTCAAATA
*
36165539 ATCCTTGTCACATTAAATTCTCGGGCCACGGAGCAATGGTTGTGTGGTCCTCCATTAAACTATCA
196 ATCCTTGTCACATTAAATTCTCGGGCCACGGAGCAATAGTTGTGTGGTCCTCCATTAAACTATCA
36165604 TCCTTC
261 TCCTTC
36165610 ATACGGCTTTGCCCTCATATGCGGAGACATTCGACCATTTTCTTCATTCGAGCGTTAAGATAAGT
1 ATACGGCTTTGCCCTCATATGCGGAGACATTCGACCATTTTCTTCATTCGAGCGTTAAGATAAGT
36165675 CTCACGAACTCTTCAAAAGGGACGTATCTTATATCTCATTTTTACTCAATCCGGGCCGTGACTCG
66 CTCACGAACTCTTCAAAAGGGACGTATCTTATATCTCATTTTTACTCAATCCGGGCCGTGACTCG
* * *
36165740 TTGCTCACTAAACCTCATGGTGCTCGTTGGCTTCTCTTTTAAGAAAGTTCAGCGGCTCTCAAATA
131 TTGCTCACTAAACCTCATGGTGCTCATTGGCTTCTCTTTAAAAAAAGTTCAGCGGCTCTCAAATA
36165805 ATCCTTGTCACATTAAATTCTCGGGCCACGGAGCAATAGTTGTGTGGTCCTCCATTAAACTATCA
196 ATCCTTGTCACATTAAATTCTCGGGCCACGGAGCAATAGTTGTGTGGTCCTCCATTAAACTATCA
36165870 TCCTTC
261 TCCTTC
36165876 TCTTATCACG
Statistics
Matches: 256, Mismatches: 10, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
266 256 1.00
ACGTcount: A:0.24, C:0.25, G:0.18, T:0.33
Consensus pattern (266 bp):
ATACGGCTTTGCCCTCATATGCGGAGACATTCGACCATTTTCTTCATTCGAGCGTTAAGATAAGT
CTCACGAACTCTTCAAAAGGGACGTATCTTATATCTCATTTTTACTCAATCCGGGCCGTGACTCG
TTGCTCACTAAACCTCATGGTGCTCATTGGCTTCTCTTTAAAAAAAGTTCAGCGGCTCTCAAATA
ATCCTTGTCACATTAAATTCTCGGGCCACGGAGCAATAGTTGTGTGGTCCTCCATTAAACTATCA
TCCTTC
Found at i:36167860 original size:13 final size:13
Alignment explanation
Indices: 36167844--36167868 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
36167834 TATTATAATA
36167844 TATATATATAAAC
1 TATATATATAAAC
36167857 TATATATATAAA
1 TATATATATAAA
36167869 AAAAATATGG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.04, G:0.00, T:0.40
Consensus pattern (13 bp):
TATATATATAAAC
Found at i:36167996 original size:3 final size:3
Alignment explanation
Indices: 36167976--36168041 Score: 73
Period size: 3 Copynumber: 22.3 Consensus size: 3
36167966 GTATGTAAGT
* * *
36167976 ATA ATA AAA ATA AAA ATA ATA GTA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
*
36168024 ACT- ATA TTA ATA A-A ATA A
1 A-TA ATA ATA ATA ATA ATA A
36168042 ACTAAAAACT
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
2 3 0.06
3 48 0.92
4 1 0.02
ACGTcount: A:0.67, C:0.02, G:0.02, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:36173006 original size:18 final size:17
Alignment explanation
Indices: 36172974--36173007 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
36172964 ATTATTTTAT
*
36172974 GTTAAAATTTATCAATC
1 GTTAAAATATATCAATC
36172991 GTTAAATATATATCAAT
1 GTTAAA-ATATATCAAT
36173008 ATAGATAATA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.44, C:0.09, G:0.06, T:0.41
Consensus pattern (17 bp):
GTTAAAATATATCAATC
Found at i:36179575 original size:131 final size:128
Alignment explanation
Indices: 36179440--36179754 Score: 328
Period size: 130 Copynumber: 2.4 Consensus size: 128
36179430 TTGTGATTTC
* * **
36179440 TCATTTGTTCAAAACAATCGAATATTCCTTTATATTCTCACTCATGTTTAT-TAAAAACACTTT-
1 TCATTTGTTCAAAACAATTGAATATCCCTTTA-ATT-TCACTCACATTT-TCT-AAAA-ACTTTC
* * *
36179503 AAAACAAAGACGATGTTCAATGTTTGGCGATTTGAGAATCGTGCCCTATCGTGCTAGATTACGCT
61 AAAACAAAGACGATATTCAATGTTTCGCGATTTGAGAATCGAGCCCTATCGTGCTAGATTACGCT
36179568 TTT
126 TTT
* * * * *
36179571 TCATTGGTTCGAAACAATTGAAGATCCCTTCGGAATTTCACTCACATTTTCTAAAATCTTTCAAA
1 TCATTTGTTCAAAACAATTGAATATCCCTT--TAATTTCACTCACATTTTCTAAAAACTTTCAAA
** * * * * *
36179636 ATGAAGGCGATATTCGATGTTTCGCGATTTGAGAATCGAGCCCTATCGTGCTGGGTTGCGCTTTT
64 ACAAAGACGATATTCAATGTTTCGCGATTTGAGAATCGAGCCCTATCGTGCTAGATTACGCTTTT
** **
36179701 TCATTTGTTCAAATTAATTGAATATCCCTTTGGAATTTCACTCGTATTTTCTAA
1 TCATTTGTTCAAAACAATTGAATATCCCTTT--AATTTCACTCACATTTTCTAA
36179755 GGTGAGGCAA
Statistics
Matches: 151, Mismatches: 27, Indels: 13
0.79 0.14 0.07
Matches are distributed among these distances:
129 4 0.03
130 107 0.71
131 36 0.24
132 3 0.02
133 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.16, T:0.38
Consensus pattern (128 bp):
TCATTTGTTCAAAACAATTGAATATCCCTTTAATTTCACTCACATTTTCTAAAAACTTTCAAAAC
AAAGACGATATTCAATGTTTCGCGATTTGAGAATCGAGCCCTATCGTGCTAGATTACGCTTTT
Found at i:36179685 original size:130 final size:130
Alignment explanation
Indices: 36179513--36179754 Score: 351
Period size: 130 Copynumber: 1.9 Consensus size: 130
36179503 AAAACAAAGA
* * *
36179513 CGATGTTCAATGTTTGGCGATTTGAGAATCGTGCCCTATCGTGCTAGATTACGCTTTTTCATTGG
1 CGATATTCAATGTTTCGCGATTTGAGAATCGAGCCCTATCGTGCTAGATTACGCTTTTTCATTGG
36179578 TTCGAAA-CAATTGAAGATCCCTTCGGAATTTCACTCACATTTTCTAAAATCTTTCAAAATGAAG
66 TTC-AAATCAATTGAAGATCCCTTCGGAATTTCACTCACATTTTCTAAAATCTTTCAAAATGAAG
36179642 G
130 G
* * * * *
36179643 CGATATTCGATGTTTCGCGATTTGAGAATCGAGCCCTATCGTGCTGGGTTGCGCTTTTTCATTTG
1 CGATATTCAATGTTTCGCGATTTGAGAATCGAGCCCTATCGTGCTAGATTACGCTTTTTCATTGG
* * * **
36179708 TTCAAATTAATTGAATATCCCTTTGGAATTTCACTCGTATTTTCTAA
66 TTCAAATCAATTGAAGATCCCTTCGGAATTTCACTCACATTTTCTAA
36179755 GGTGAGGCAA
Statistics
Matches: 98, Mismatches: 13, Indels: 2
0.87 0.12 0.02
Matches are distributed among these distances:
129 3 0.03
130 95 0.97
ACGTcount: A:0.24, C:0.19, G:0.19, T:0.38
Consensus pattern (130 bp):
CGATATTCAATGTTTCGCGATTTGAGAATCGAGCCCTATCGTGCTAGATTACGCTTTTTCATTGG
TTCAAATCAATTGAAGATCCCTTCGGAATTTCACTCACATTTTCTAAAATCTTTCAAAATGAAGG
Found at i:36181260 original size:5 final size:5
Alignment explanation
Indices: 36181250--36181286 Score: 51
Period size: 5 Copynumber: 7.6 Consensus size: 5
36181240 CATGCATTTA
36181250 CATTG CATTG CA-T- CATTTG CATTG CATTG CATTG CAT
1 CATTG CATTG CATTG CA-TTG CATTG CATTG CATTG CAT
36181287 CATTTGCATT
Statistics
Matches: 29, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
3 2 0.07
4 1 0.03
5 24 0.83
6 2 0.07
ACGTcount: A:0.22, C:0.22, G:0.16, T:0.41
Consensus pattern (5 bp):
CATTG
Found at i:36181277 original size:24 final size:24
Alignment explanation
Indices: 36181250--36181296 Score: 94
Period size: 24 Copynumber: 2.0 Consensus size: 24
36181240 CATGCATTTA
36181250 CATTGCATTGCATCATTTGCATTG
1 CATTGCATTGCATCATTTGCATTG
36181274 CATTGCATTGCATCATTTGCATT
1 CATTGCATTGCATCATTTGCATT
36181297 AAATTTCCCA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.21, C:0.21, G:0.15, T:0.43
Consensus pattern (24 bp):
CATTGCATTGCATCATTTGCATTG
Found at i:36181296 original size:19 final size:19
Alignment explanation
Indices: 36181244--36181281 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
36181234 TCATCCCATG
36181244 CATTTACATTGCATTGCAT
1 CATTTACATTGCATTGCAT
*
36181263 CATTTGCATTGCATTGCAT
1 CATTTACATTGCATTGCAT
36181282 TGCATCATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.24, C:0.21, G:0.13, T:0.42
Consensus pattern (19 bp):
CATTTACATTGCATTGCAT
Found at i:36182771 original size:7 final size:7
Alignment explanation
Indices: 36182759--36182791 Score: 66
Period size: 7 Copynumber: 4.7 Consensus size: 7
36182749 TTAATAGTCG
36182759 TCAAATT
1 TCAAATT
36182766 TCAAATT
1 TCAAATT
36182773 TCAAATT
1 TCAAATT
36182780 TCAAATT
1 TCAAATT
36182787 TCAAA
1 TCAAA
36182792 AAAAAAGAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 26 1.00
ACGTcount: A:0.45, C:0.15, G:0.00, T:0.39
Consensus pattern (7 bp):
TCAAATT
Found at i:36184757 original size:45 final size:44
Alignment explanation
Indices: 36184704--36184927 Score: 141
Period size: 45 Copynumber: 5.1 Consensus size: 44
36184694 CTGAAATTAA
* *
36184704 AGTGAAGCAGATCGAAGACGGCAAATCTGAGCTTCCTGAAGTTGC
1 AGTGAAGCAGATCGAAGACAGCAAATCT-AGCTTCCTAAAGTTGC
** * * * *
36184749 AGTGAAGCAGATTTAAGCCA-CCAACCTAGC-TCTCTAAAGTTGT
1 AGTGAAGCAGATCGAAGACAGCAAATCTAGCTTC-CTAAAGTTGC
* * * * * *** * * * *
36184792 AGTGGAGTAG-GCTAAAATTTCAGATCTTGTTTCCCTGAAGTTGC
1 AGTGAAGCAGATCGAAGACAGCAAATCTAGCTT-CCTAAAGTTGC
36184836 AGTGAAGCAGATCGAAGACAGCAAATCTGAGCTTCCTAAAGTTGC
1 AGTGAAGCAGATCGAAGACAGCAAATCT-AGCTTCCTAAAGTTGC
** * * * * *
36184881 AGTGAAGCAGATTTAAGCCA-CCAACCTAGCTCCCTAAAGTTGT
1 AGTGAAGCAGATCGAAGACAGCAAATCTAGCTTCCTAAAGTTGC
36184924 AGTG
1 AGTG
36184928 GAGTAGGCTA
Statistics
Matches: 131, Mismatches: 42, Indels: 14
0.70 0.22 0.07
Matches are distributed among these distances:
42 5 0.04
43 42 0.32
44 27 0.21
45 54 0.41
46 3 0.02
ACGTcount: A:0.31, C:0.21, G:0.24, T:0.25
Consensus pattern (44 bp):
AGTGAAGCAGATCGAAGACAGCAAATCTAGCTTCCTAAAGTTGC
Found at i:36184905 original size:132 final size:130
Alignment explanation
Indices: 36184668--36185590 Score: 988
Period size: 132 Copynumber: 7.0 Consensus size: 130
36184658 TGGGCTTATG
* * * ** *
36184668 AGGCTAAAATTTTAGATCTTATTTCCCTGAAATTAAAGTGAAGCAGATCGAAGACGGCAAATCTG
1 AGGCTAAAATTATAGATCTTGTTTCCCTGAAGTTGCAGTGAGGCAGATCGAAGACGGCAAATCTG
* *
36184733 AGCTTCCTGAAGTTGCAGTGAAGCAGATTTAAGCCACCAACCTAGCTCTCTAAAGTTGTAGTGGA
66 AGCTTCCTGAAGTTGCAGTGAAGCAGATTTAAG-CA-CATCCTAGCTCCCTAAAGTTGTAGTGGA
36184798 GT
129 GT
* *
36184800 AGGCTAAAATT-TCAGATCTTGTTTCCCTGAAGTTGCAGTGAAGCAGATCGAAGACAGCAAATCT
1 AGGCTAAAATTAT-AGATCTTGTTTCCCTGAAGTTGCAGTGAGGCAGATCGAAGACGGCAAATCT
* *
36184864 GAGCTTCCTAAAGTTGCAGTGAAGCAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTGTAGTGG
65 GAGCTTCCTGAAGTTGCAGTGAAGCAGATTTAAG-CA-CATCCTAGCTCCCTAAAGTTGTAGTGG
36184929 AGT
128 AGT
* * * * **
36184932 AGGCTAAAATTTTAGATCTTGTTTCCCTGAAGTTACAGTGAAGTAGATCGAAGACGGTGAATCTG
1 AGGCTAAAATTATAGATCTTGTTTCCCTGAAGTTGCAGTGAGGCAGATCGAAGACGGCAAATCTG
* *
36184997 AGCTTCCTGAAGTTGCAGTGAAGCAAATTTAAGCCACCATCCTAGCTCCCTAAGGTTGTAGTGGA
66 AGCTTCCTGAAGTTGCAGTGAAGCAGATTTAAG-CA-CATCCTAGCTCCCTAAAGTTGTAGTGGA
*
36185062 AT
129 GT
* * *
36185064 AGGCTAAAGATTATAGATCTTGTTTCCCT-AATATTGCAGTGGGGCAGATCGAAGACGGCGAATC
1 AGGCTAAA-ATTATAGATCTTGTTTCCCTGAA-GTTGCAGTGAGGCAGATCGAAGACGGCAAATC
* *
36185128 T-AGGCTTCCTGATGTTGCAGTGAAGCAGATTTAAGCA-AGTCCTAGCTCTCTAAAGTTGTAGTG
64 TGA-GCTTCCTGAAGTTGCAGTGAAGCAGATTTAAGCACA-TCCTAGCTCCCTAAAGTTGTAGTG
36185191 GAGT
127 GAGT
* * * * ** * * **
36185195 GGGCTGAAGATTGTAGATCTCGCCTCCCTGAAGTTGCAGTGAGGCAAATCAAAGACGATAAATCT
1 AGGCT-AAAATTATAGATCTTGTTTCCCTGAAGTTGCAGTGAGGCAGATCGAAGACGGCAAATC-
* * * *
36185260 TG-GCTTCCTGAAGATGCAGCGAAGCAGATTTAAG--CATCCTAGCTCCTTAAGGTTGTAGTGGA
64 TGAGCTTCCTGAAGTTGCAGTGAAGCAGATTTAAGCACATCCTAGCTCCCTAAAGTTGTAGTGGA
36185322 GT
129 GT
* * *
36185324 AGGCTAAAGATTATAGATCTTGTTTCCCTG-AGATTGCAGTGGGGCAGATCGAAAACGGCGAATC
1 AGGCTAAA-ATTATAGATCTTGTTTCCCTGAAG-TTGCAGTGAGGCAGATCGAAGACGGCAAATC
* * * * * *
36185388 T-AGGCTTCTTGATGTTACAGTAAAGCAGATTTAAGCA-AGTCCTAGCTCTCTAAATTTGTAGTG
64 TGA-GCTTCCTGAAGTTGCAGTGAAGCAGATTTAAGCACA-TCCTAGCTCCCTAAAGTTGTAGTG
36185451 GAGT
127 GAGT
** * * * * * * * ** *
36185455 AGGCTGAGGATTGTAGATCTCGTCTCCCTGAAGTTACAGTGAGGCAAATCAAATACGATAAGTCT
1 AGGCT-AAAATTATAGATCTTGTTTCCCTGAAGTTGCAGTGAGGCAGATCGAAGACGGCAAATC-
* * * *
36185520 TG-GCTTCCTAAAGATGCAGCGAAGCAGATTTAAGCA-AGTCCTAGCTCCCTAAAGTTGTAGTGA
64 TGAGCTTCCTGAAGTTGCAGTGAAGCAGATTTAAGCACA-TCCTAGCTCCCTAAAGTTGTAGTGG
36185583 AGT
128 AGT
*
36185586 GGGCT
1 AGGCT
36185591 GAAGATTGTA
Statistics
Matches: 673, Mismatches: 96, Indels: 45
0.83 0.12 0.06
Matches are distributed among these distances:
128 5 0.01
129 96 0.14
130 3 0.00
131 227 0.34
132 265 0.39
133 77 0.11
ACGTcount: A:0.30, C:0.18, G:0.25, T:0.27
Consensus pattern (130 bp):
AGGCTAAAATTATAGATCTTGTTTCCCTGAAGTTGCAGTGAGGCAGATCGAAGACGGCAAATCTG
AGCTTCCTGAAGTTGCAGTGAAGCAGATTTAAGCACATCCTAGCTCCCTAAAGTTGTAGTGGAGT
Found at i:36185250 original size:131 final size:129
Alignment explanation
Indices: 36184680--36185606 Score: 1002
Period size: 131 Copynumber: 7.1 Consensus size: 129
36184670 GCTAAAATTT
* * ** *
36184680 TAGATCTTATTTCCCTGAAATTAAAGTGAAGCAGATCGAAGACGGCAAATCTGAGCTTCCTGAAG
1 TAGATCTTGTTTCCCTGAAGTTGCAGTGAGGCAGATCGAAGACGGCAAATCTG-GCTTCCTGAAG
* * *
36184745 TTGCAGTGAAGCAGATTTAAGCCACCAACCTAGCTCTCTAAAGTTGTAGTGGAGTAGGCT-AAAA
65 TTGCAGTGAAGCAGATTTAAG-CA--ATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAGA
36184809 TT-
127 TTG
* * *
36184811 TCAGATCTTGTTTCCCTGAAGTTGCAGTGAAGCAGATCGAAGACAGCAAATCTGAGCTTCCTAAA
1 T-AGATCTTGTTTCCCTGAAGTTGCAGTGAGGCAGATCGAAGACGGCAAATCTG-GCTTCCTGAA
* *
36184876 GTTGCAGTGAAGCAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCT-AAA
64 GTTGCAGTGAAGCAGATTTAAG-CA--ATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAG
*
36184940 ATTT
126 ATTG
* * * **
36184944 TAGATCTTGTTTCCCTGAAGTTACAGTGAAGTAGATCGAAGACGGTGAATCTGAGCTTCCTGAAG
1 TAGATCTTGTTTCCCTGAAGTTGCAGTGAGGCAGATCGAAGACGGCAAATCTG-GCTTCCTGAAG
* * * *
36185009 TTGCAGTGAAGCAAATTTAAGCCACCATCCTAGCTCCCTAAGGTTGTAGTGGAATAGGCTAAAGA
65 TTGCAGTGAAGCAGATTTAAG-CA--ATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAGA
*
36185074 TTA
127 TTG
* * * *
36185077 TAGATCTTGTTTCCCT-AATATTGCAGTGGGGCAGATCGAAGACGGCGAATCTAGGCTTCCTGAT
1 TAGATCTTGTTTCCCTGAA-GTTGCAGTGAGGCAGATCGAAGACGGCAAATCT-GGCTTCCTGAA
* *
36185141 GTTGCAGTGAAGCAGATTTAAGCAAGTCCTAGCTCTCTAAAGTTGTAGTGGAGTGGGCTGAAGAT
64 GTTGCAGTGAAGCAGATTTAAGCAA-TCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAGAT
36185206 TG
128 TG
* ** * * **
36185208 TAGATCTCGCCTCCCTGAAGTTGCAGTGAGGCAAATCAAAGACGATAAATCTTGGCTTCCTGAAG
1 TAGATCTTGTTTCCCTGAAGTTGCAGTGAGGCAGATCGAAGACGGCAAATC-TGGCTTCCTGAAG
* * * * * *
36185273 ATGCAGCGAAGCAGATTTAAGC-ATCCTAGCTCCTTAAGGTTGTAGTGGAGTAGGCTAAAGATTA
65 TTGCAGTGAAGCAGATTTAAGCAATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAGATTG
* * * * *
36185337 TAGATCTTGTTTCCCTG-AGATTGCAGTGGGGCAGATCGAAAACGGCGAATCTAGGCTTCTTGAT
1 TAGATCTTGTTTCCCTGAAG-TTGCAGTGAGGCAGATCGAAGACGGCAAATCT-GGCTTCCTGAA
* * * * *
36185401 GTTACAGTAAAGCAGATTTAAGCAAGTCCTAGCTCTCTAAATTTGTAGTGGAGTAGGCTGAGGAT
64 GTTGCAGTGAAGCAGATTTAAGCAA-TCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAGAT
36185466 TG
128 TG
* * * * * * ** * *
36185468 TAGATCTCGTCTCCCTGAAGTTACAGTGAGGCAAATCAAATACGATAAGTCTTGGCTTCCTAAAG
1 TAGATCTTGTTTCCCTGAAGTTGCAGTGAGGCAGATCGAAGACGGCAAATC-TGGCTTCCTGAAG
* * * *
36185533 ATGCAGCGAAGCAGATTTAAGCAAGTCCTAGCTCCCTAAAGTTGTAGTGAAGTGGGCTGAAGATT
65 TTGCAGTGAAGCAGATTTAAGCAA-TCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAGATT
36185598 G
129 G
*
36185599 TAGGTCTT
1 TAGATCTT
36185607 ATCTTCTCGA
Statistics
Matches: 682, Mismatches: 100, Indels: 28
0.84 0.12 0.03
Matches are distributed among these distances:
128 3 0.00
129 101 0.15
130 3 0.00
131 248 0.36
132 247 0.36
133 79 0.12
134 1 0.00
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.28
Consensus pattern (129 bp):
TAGATCTTGTTTCCCTGAAGTTGCAGTGAGGCAGATCGAAGACGGCAAATCTGGCTTCCTGAAGT
TGCAGTGAAGCAGATTTAAGCAATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAGATTG
Found at i:36185362 original size:260 final size:260
Alignment explanation
Indices: 36184691--36185606 Score: 1128
Period size: 260 Copynumber: 3.5 Consensus size: 260
36184681 AGATCTTATT
* * * * * ** * *
36184691 TCCCTGAAATTAAAGTGAAGCAGATCGAAGACGGCAAATCTGAGCTTCCTGAAGTTGCAGTGAAG
1 TCCCTGAAGTTACAGTGAGGCAAATCAAAGACGATAAATCTGAGCTTCCTGAAGATGCAGCGAAG
* *
36184756 CAGATTTAAGCCACCAACCTAGCTCTCTAAAGTTGTAGTGGAGTAGGCTAAA-ATT-TCAGATCT
66 CAGATTTAAG---CCATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTAAAGATTAT-AGATCT
** * * * *
36184819 TGTTTCCCTGAAGTTGCAGTGAAGCAGATCGAAGACAGCAAATCT-GAGCTTCCTAAAGTTGCAG
127 TGTTTCCCTGAA-TTGCAGTGGGGCAGATCGAAGACGGCGAATCTAG-GCTTCCTGATGTTGCAG
* * * *
36184883 TGAAGCAGATTTAAGCCACCA-ACCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCT-AAAATTTTA
190 TGAAGCAGATTTAAG-CA--AGTCCTAGCTCTCTAAAGTTGTAGTGGAGTAGGCTGAAGATTGTA
* *
36184946 GATCTTGTT
252 GATCTCGTC
* * * * * * * *
36184955 TCCCTGAAGTTACAGTGAAGTAGATCGAAGACGGTGAATCTGAGCTTCCTGAAGTTGCAGTGAAG
1 TCCCTGAAGTTACAGTGAGGCAAATCAAAGACGATAAATCTGAGCTTCCTGAAGATGCAGCGAAG
* * *
36185020 CAAATTTAAGCCACCATCCTAGCTCCCTAAGGTTGTAGTGGAATAGGCTAAAGATTATAGATCTT
66 CAGATTTAAG---CCATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTAAAGATTATAGATCTT
*
36185085 GTTTCCCTAATATTGCAGTGGGGCAGATCGAAGACGGCGAATCTAGGCTTCCTGATGTTGCAGTG
128 GTTTCCCTGA-ATTGCAGTGGGGCAGATCGAAGACGGCGAATCTAGGCTTCCTGATGTTGCAGTG
*
36185150 AAGCAGATTTAAGCAAGTCCTAGCTCTCTAAAGTTGTAGTGGAGTGGGCTGAAGATTGTAGATCT
192 AAGCAGATTTAAGCAAGTCCTAGCTCTCTAAAGTTGTAGTGGAGTAGGCTGAAGATTGTAGATCT
*
36185215 CGCC
257 CGTC
*
36185219 TCCCTGAAGTTGCAGTGAGGCAAATCAAAGACGATAAATCTTG-GCTTCCTGAAGATGCAGCGAA
1 TCCCTGAAGTTACAGTGAGGCAAATCAAAGACGATAAATC-TGAGCTTCCTGAAGATGCAGCGAA
* *
36185283 GCAGATTTAAG-CATCCTAGCTCCTTAAGGTTGTAGTGGAGTAGGCTAAAGATTATAGATCTTGT
65 GCAGATTTAAGCCATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTAAAGATTATAGATCTTGT
* * * *
36185347 TTCCCTGAGATTGCAGTGGGGCAGATCGAAAACGGCGAATCTAGGCTTCTTGATGTTACAGTAAA
130 TTCCCTGA-ATTGCAGTGGGGCAGATCGAAGACGGCGAATCTAGGCTTCCTGATGTTGCAGTGAA
* *
36185412 GCAGATTTAAGCAAGTCCTAGCTCTCTAAATTTGTAGTGGAGTAGGCTGAGGATTGTAGATCTCG
194 GCAGATTTAAGCAAGTCCTAGCTCTCTAAAGTTGTAGTGGAGTAGGCTGAAGATTGTAGATCTCG
36185477 TC
259 TC
* * *
36185479 TCCCTGAAGTTACAGTGAGGCAAATCAAATACGATAAGTCTTG-GCTTCCTAAAGATGCAGCGAA
1 TCCCTGAAGTTACAGTGAGGCAAATCAAAGACGATAAATC-TGAGCTTCCTGAAGATGCAGCGAA
* * * * * *
36185543 GCAGATTTAAGCAAGTCCTAGCTCCCTAAAGTTGTAGTGAAGTGGGCTGAAGATTGTAGGTCTT
65 GCAGATTTAAGCCA-TCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTAAAGATTATAGATCTT
36185607 ATCTTCTCGA
Statistics
Matches: 584, Mismatches: 59, Indels: 20
0.88 0.09 0.03
Matches are distributed among these distances:
260 244 0.42
261 1 0.00
262 43 0.07
263 30 0.05
264 184 0.32
265 79 0.14
266 3 0.01
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.27
Consensus pattern (260 bp):
TCCCTGAAGTTACAGTGAGGCAAATCAAAGACGATAAATCTGAGCTTCCTGAAGATGCAGCGAAG
CAGATTTAAGCCATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTAAAGATTATAGATCTTGTT
TCCCTGAATTGCAGTGGGGCAGATCGAAGACGGCGAATCTAGGCTTCCTGATGTTGCAGTGAAGC
AGATTTAAGCAAGTCCTAGCTCTCTAAAGTTGTAGTGGAGTAGGCTGAAGATTGTAGATCTCGTC
Found at i:36185850 original size:44 final size:44
Alignment explanation
Indices: 36185786--36187096 Score: 1739
Period size: 44 Copynumber: 29.8 Consensus size: 44
36185776 CAAGACCAGA
* * * * *
36185786 CAGATTTGGCGTCTCTGTAGTAGCGGAAAGCAAATCGAATATAG
1 CAGATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGATAG
* * * *
36185830 TAGATTTGGCATCTCTGTAGTGGCGGAGAGCAAATCGAAGATAG
1 CAGATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGATAG
* * *
36185874 TAGATTTGGCGTCTCTATATTGGCGGAGAGCAGATCGAAAATAG
1 CAGATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGATAG
* *
36185918 CAGATTTGGCGTTTCTGTATTGGCAGAGAGCAGATCGAAGATAG
1 CAGATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGATAG
* * *
36185962 CAGATTTAGCGTCTCTGTATTGACAGAGAGCAGATCGAAGATAG
1 CAGATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGATAG
*
36186006 CAGATTTGGCGTCTCTGTGTTGGCGGAGAGCAGATCGAAGATAG
1 CAGATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGATAG
* * * *
36186050 TAGATTTAGCGTATCTGTGTTGGCGGAGAGCAGATCGAAGATAG
1 CAGATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGATAG
*
36186094 CAGATTTGGCGTCTCTGTGTTGGCGGAGAGCAGATCGAAGATAG
1 CAGATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGATAG
* * *
36186138 CAGATTTAGCGTCTCTGTATTGGCAGAGAGAAGATCGAAGATAG
1 CAGATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGATAG
*
36186182 CAGATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCAAAGATAG
1 CAGATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGATAG
* *
36186226 TAGATTTGGCGTCTTTGTATTGGCGGAGAGCAGATCGAAGATAG
1 CAGATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGATAG
* ** * * *
36186270 CACATTTAACGTCTCTGTATCGTCGGAGGGCAGATCGAAGATAG
1 CAGATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGATAG
** * *
36186314 CAGATTTGGCGTCTCTGTATTAACAGAGAGCAGATCGAAAATAG
1 CAGATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGATAG
* *
36186358 CAGATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAAGATAG
1 CAGATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGATAG
* * * *
36186402 CAGATTTGACGTCTCTGTATCGTCGGAGGGCAGATCGAAGATAG
1 CAGATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGATAG
* * * *
36186446 CAGATTTGGCGTCTCTATATTGTCAGAGGGCAGATCGAAGAT-G
1 CAGATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGATAG
* * * * *
36186489 TTAGATTTGGTGTTTCTGTATTGGCAGAGAGAAGATCGAAGATAG
1 -CAGATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGATAG
* * * *
36186534 CAGATTCGACGTCTCTGTATTGGCGGAGAGCAAATCGAAGACAG
1 CAGATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGATAG
* *
36186578 CAGATTTGGCGTCTCTGTATTGGCGGAGAGTAGATCGAAGAGAG
1 CAGATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGATAG
* **
36186622 CAGATTTGGCGTCTCTGTATTGACAAAGAGCAGATCGAAGATAG
1 CAGATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGATAG
* * *
36186666 AAGATTTGGCGTCTCTGTATTGGCGGAGAGCAAATCGAAGAGAG
1 CAGATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGATAG
* * * *
36186710 GAGATTTGGCGTCTCCGTATTGACAGAGAGCAGATCGAAGATAG
1 CAGATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGATAG
* ** *
36186754 CAGATTTGGCATCTCTGTATTATCGGAGGGCAGATCGAAGATAG
1 CAGATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGATAG
* * *
36186798 CAGATTTGGCGTCTCTGTATTGTCAGAGGGCAGATCGAAGAT-G
1 CAGATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGATAG
* *
36186841 TTAGATTTGGTGTCTCTGTATTGGCGGAGAGCAGATCGAAGATAG
1 -CAGATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGATAG
* * * *
36186886 CAGATTTGGCGTCTCTGTATTTGCAGAGAGCAAATCGAAGACAG
1 CAGATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGATAG
36186930 CAGATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGAT-G
1 CAGATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGATAG
*
36186973 ACAGATTTGGCGTCTCTGTATTGGCGGAGAGTAGATCGAAGATAG
1 -CAGATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGATAG
* * * *
36187018 CAGATTTGGCATCTCTGTGTTGACAGAGAGCAGATCGAAGAT-G
1 CAGATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGATAG
* * *
36187061 ACAGATTTGGCATCTCTATATTGGCAGAGAGCAGAT
1 -CAGATTTGGCGTCTCTGTATTGGCGGAGAGCAGAT
36187097 AAAAATAACA
Statistics
Matches: 1121, Mismatches: 139, Indels: 14
0.88 0.11 0.01
Matches are distributed among these distances:
43 4 0.00
44 1114 0.99
45 3 0.00
ACGTcount: A:0.28, C:0.15, G:0.31, T:0.26
Consensus pattern (44 bp):
CAGATTTGGCGTCTCTGTATTGGCGGAGAGCAGATCGAAGATAG
Found at i:36189963 original size:130 final size:129
Alignment explanation
Indices: 36189777--36190032 Score: 352
Period size: 130 Copynumber: 2.0 Consensus size: 129
36189767 ATTAAAAACA
* *
36189777 CTTTAAAACGAAGACGATGTTCAATGTTTGGCGATTTGAGAATCGTGCCCTATCGTGCTAGATTA
1 CTTTAAAACGAAGACGATATTCAATGTTTGGCGATTTGAGAATCGAGCCCTATCGTGCTAGATTA
*
36189842 CGCTTTTTCATTGGTTCGAAA-CAATTGAAGATCACTTCGGAATTTCACTCACATTTTCTAAAAT
66 CGCTTTTTCATTGGTTC-AAATCAATCGAAGATCACTTCGGAATTTCACTCACATTTTCTAAAAT
* * * * *
36189906 CTTTCAAAATGAAGGCGATATTCGATGTTTGGCGATTTGAGAATCGAGCCCTATCGTGCTGGGTT
1 CTTT-AAAACGAAGACGATATTCAATGTTTGGCGATTTGAGAATCGAGCCCTATCGTGCTAGATT
* * * * * * *
36189971 GCGCTTTTTCATTTGTTCAAATTAATCGAATATCCCTTTGGAATTTCACTCATATTTTCTAA
65 ACGCTTTTTCATTGGTTCAAATCAATCGAAGATCACTTCGGAATTTCACTCACATTTTCTAA
36190033 GGTGAGGCAA
Statistics
Matches: 110, Mismatches: 15, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
129 7 0.06
130 103 0.94
ACGTcount: A:0.27, C:0.18, G:0.18, T:0.37
Consensus pattern (129 bp):
CTTTAAAACGAAGACGATATTCAATGTTTGGCGATTTGAGAATCGAGCCCTATCGTGCTAGATTA
CGCTTTTTCATTGGTTCAAATCAATCGAAGATCACTTCGGAATTTCACTCACATTTTCTAAAAT
Found at i:36191314 original size:26 final size:26
Alignment explanation
Indices: 36191283--36191338 Score: 67
Period size: 26 Copynumber: 2.2 Consensus size: 26
36191273 ATTTTGATTC
* **
36191283 TTAAATAGTTAATTAAAATATAAAAA
1 TTAAATAGTAAAAAAAAATATAAAAA
* *
36191309 TTAAATCGTAAAAAAAAATATAAAAG
1 TTAAATAGTAAAAAAAAATATAAAAA
36191335 TTAA
1 TTAA
36191339 TCATTATTGA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.62, C:0.02, G:0.05, T:0.30
Consensus pattern (26 bp):
TTAAATAGTAAAAAAAAATATAAAAA
Found at i:36192594 original size:10 final size:10
Alignment explanation
Indices: 36192575--36192634 Score: 77
Period size: 10 Copynumber: 6.0 Consensus size: 10
36192565 TGAAATTCTA
36192575 AAAGATAAAT
1 AAAGATAAAT
36192585 ACAA-ATAAAT
1 A-AAGATAAAT
*
36192595 AAAGATAATT
1 AAAGATAAAT
*
36192605 AAATATAAAT
1 AAAGATAAAT
36192615 AAAGATAAAT
1 AAAGATAAAT
*
36192625 AAAAATAAAT
1 AAAGATAAAT
36192635 CCTAAAATTT
Statistics
Matches: 43, Mismatches: 5, Indels: 4
0.83 0.10 0.08
Matches are distributed among these distances:
9 2 0.05
10 39 0.91
11 2 0.05
ACGTcount: A:0.70, C:0.02, G:0.05, T:0.23
Consensus pattern (10 bp):
AAAGATAAAT
Found at i:36192666 original size:20 final size:20
Alignment explanation
Indices: 36192589--36192666 Score: 70
Period size: 20 Copynumber: 3.9 Consensus size: 20
36192579 ATAAATACAA
*
36192589 ATAAATAAAGATAATTAAAT
1 ATAAATAAAAATAATTAAAT
* * *
36192609 ATAAATAAAGATAAATAAAA
1 ATAAATAAAAATAATTAAAT
*
36192629 ATAAATCCTAAAAT--TTAAAT
1 ATAAAT--AAAAATAATTAAAT
*
36192649 CTAAATAAAAATAATTAA
1 ATAAATAAAAATAATTAA
36192667 TAATTATCCT
Statistics
Matches: 46, Mismatches: 8, Indels: 8
0.74 0.13 0.13
Matches are distributed among these distances:
18 5 0.11
20 37 0.80
22 4 0.09
ACGTcount: A:0.65, C:0.04, G:0.03, T:0.28
Consensus pattern (20 bp):
ATAAATAAAAATAATTAAAT
Found at i:36193465 original size:96 final size:97
Alignment explanation
Indices: 36193300--36193481 Score: 287
Period size: 96 Copynumber: 1.9 Consensus size: 97
36193290 ATTTTATTTA
* * * * *
36193300 TTTATTTTTACTTAGGAATATATTGAACCTTTTGACGCGAAGAGAGATGATAGCCAAGCACCCTA
1 TTTATTTTTACCTAAGAACATATCGAACCTTTTGACGCGAAGAGAGATGACAGCCAAGCACCCTA
36193365 CCCCGGTTACTCAGCCCAACATACTCCTAATT
66 CCCCGGTTACTCAGCCCAACATACTCCTAATT
36193397 TTTATTTTT-CCTAAGAACATATCGAACCTTTTGACGCGAAGAGAGATGACAGCCAAGCA-CCTC
1 TTTATTTTTACCTAAGAACATATCGAACCTTTTGACGCGAAGAGAGATGACAGCCAAGCACCCT-
*
36193460 ACCCCGGTTACTTAGCCCAACA
65 ACCCCGGTTACTCAGCCCAACA
36193482 CATTCTTAGA
Statistics
Matches: 78, Mismatches: 6, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
95 3 0.04
96 66 0.85
97 9 0.12
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.27
Consensus pattern (97 bp):
TTTATTTTTACCTAAGAACATATCGAACCTTTTGACGCGAAGAGAGATGACAGCCAAGCACCCTA
CCCCGGTTACTCAGCCCAACATACTCCTAATT
Found at i:36194301 original size:14 final size:14
Alignment explanation
Indices: 36194274--36194307 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
36194264 TAAAAATAAT
*
36194274 AAAT-AATAAGATA
1 AAATAAATAAAATA
36194287 AAATAAATAAAATA
1 AAATAAATAAAATA
36194301 AAATAAA
1 AAATAAA
36194308 AATAGAAATT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 4 0.21
14 15 0.79
ACGTcount: A:0.76, C:0.00, G:0.03, T:0.21
Consensus pattern (14 bp):
AAATAAATAAAATA
Found at i:36200688 original size:10 final size:10
Alignment explanation
Indices: 36200673--36200718 Score: 60
Period size: 10 Copynumber: 4.6 Consensus size: 10
36200663 ATTTTAAAAC
36200673 ATAAATACAA-
1 ATAAATA-AAG
36200683 ATAAATAAAG
1 ATAAATAAAG
36200693 ATAAATAAAG
1 ATAAATAAAG
36200703 ATAAATGAAA-
1 ATAAAT-AAAG
36200713 ATAAAT
1 ATAAAT
36200719 CCTAAAATTT
Statistics
Matches: 34, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
9 2 0.06
10 29 0.85
11 3 0.09
ACGTcount: A:0.70, C:0.02, G:0.07, T:0.22
Consensus pattern (10 bp):
ATAAATAAAG
Found at i:36204890 original size:12 final size:12
Alignment explanation
Indices: 36204870--36204899 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
36204860 TATGGTTAAT
*
36204870 TTCTTTAGCAGC
1 TTCTGTAGCAGC
36204882 TTCTGTAGCAGC
1 TTCTGTAGCAGC
36204894 TTCTGT
1 TTCTGT
36204900 TGTTTGTATT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.13, C:0.23, G:0.20, T:0.43
Consensus pattern (12 bp):
TTCTGTAGCAGC
Found at i:36205545 original size:91 final size:91
Alignment explanation
Indices: 36205413--36205620 Score: 274
Period size: 91 Copynumber: 2.3 Consensus size: 91
36205403 TTGATTTTAG
* *
36205413 TAAATTCATATAAGAACATTTTATTATTAACAATTTCATGAAATTATATATCACTATTAAATTAT
1 TAAATTCATATAAGAA-AATTTATTATCAACAATTTCATGAAATTATATATCACTATTAAATTAT
* *
36205478 ATTTAAT-ATTAATTATTTTAAATTGTA
65 ATGTAATAATT-ATTATTTTAAATTATA
* * * * *
36205505 TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTTTATATTATTATTAAATTATA
1 TAAATTCATATAAGAAAATTTATTATCAACAATTTCATGAAATTATATATCACTATTAAATTATA
36205570 TGTAATAATTATTATTTTAAATTATA
66 TGTAATAATTATTATTTTAAATTATA
* * * *
36205596 CAAATTCATAAAATATAATTTATTA
1 TAAATTCATATAAGAAAATTTATTA
36205621 GTTATAATTA
Statistics
Matches: 102, Mismatches: 13, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
91 83 0.81
92 19 0.19
ACGTcount: A:0.45, C:0.05, G:0.03, T:0.47
Consensus pattern (91 bp):
TAAATTCATATAAGAAAATTTATTATCAACAATTTCATGAAATTATATATCACTATTAAATTATA
TGTAATAATTATTATTTTAAATTATA
Found at i:36205669 original size:16 final size:17
Alignment explanation
Indices: 36205650--36205681 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
36205640 TTATTAAATC
36205650 ATATATTTAA-ATTAAA
1 ATATATTTAATATTAAA
36205666 ATATATTTAATATTAA
1 ATATATTTAATATTAA
36205682 TTATTTAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (17 bp):
ATATATTTAATATTAAA
Found at i:36205745 original size:66 final size:63
Alignment explanation
Indices: 36205674--36205886 Score: 194
Period size: 61 Copynumber: 3.4 Consensus size: 63
36205664 AAATATATTT
36205674 AATATTAATTATTTAA-AATTTTATTTTATAGTATCATATATTATGATTTGAGTAAATTCATATA
1 AATATTAATTA-TTAAGAATTTTA--TTA-AGTATCATATATTATGATTTGAGTAAATTCATATA
36205738 AG
62 AG
* * * * * * *
36205740 AATATTAATTATTAAGAATTTTATTAA--ATTATATATTTTAATTAT-ATTATATTTA-ATAAT
1 AATATTAATTATTAAGAATTTTATTAAGTATCATATATTATGATT-TGAGTAAATTCATATAAG
* * * *
36205800 AATTATGTTATT-TT-A-TATTTTA--CAGTATCATATATTATGGTTTGAGTAAATTCATATAAG
1 AA-TAT-TAATTATTAAGAATTTTATTAAGTATCATATATTATGATTTGAGTAAATTCATATAAG
36205860 AATATTAATTATTAAGAATTTTATTAA
1 AATATTAATTATTAAGAATTTTATTAA
36205887 ATTATATATT
Statistics
Matches: 113, Mismatches: 21, Indels: 29
0.69 0.13 0.18
Matches are distributed among these distances:
57 1 0.01
58 5 0.04
59 30 0.27
60 14 0.12
61 31 0.27
62 5 0.04
63 2 0.02
64 3 0.03
65 4 0.04
66 18 0.16
ACGTcount: A:0.41, C:0.02, G:0.07, T:0.50
Consensus pattern (63 bp):
AATATTAATTATTAAGAATTTTATTAAGTATCATATATTATGATTTGAGTAAATTCATATAAG
Found at i:36205760 original size:120 final size:120
Alignment explanation
Indices: 36205636--36205928 Score: 482
Period size: 120 Copynumber: 2.4 Consensus size: 120
36205626 AATTATTTTA
* * *
36205636 AATTTTATTAAATCATATATTTAAATTAAAATATATTTAATATTAATTAT-TTAAAATTT-TATT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTT--AATTTATATT
*
36205699 TTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
64 TTACAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
* * *
36205756 AATTTTATTAAATTATATATTTTAATTATATTATATTTAATAATAATTATGTTATTTTATATTTT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTT
*
36205821 ACAGTATCATATATTATGGTTTGAGTAAATTCATATAAGAATATTAATTATTAAG
66 ACAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
36205876 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTT
36205929 TAAATATGAT
Statistics
Matches: 161, Mismatches: 10, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
119 4 0.02
120 155 0.96
121 2 0.01
ACGTcount: A:0.43, C:0.02, G:0.05, T:0.50
Consensus pattern (120 bp):
AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTT
ACAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
Found at i:36205788 original size:18 final size:17
Alignment explanation
Indices: 36205757--36205791 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
36205747 ATTATTAAGA
36205757 ATTTTATTAAATTATAT
1 ATTTTATTAAATTATAT
*
36205774 ATTTTAATTATATTATAT
1 ATTTT-ATTAAATTATAT
36205792 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (17 bp):
ATTTTATTAAATTATAT
Found at i:36205905 original size:18 final size:17
Alignment explanation
Indices: 36205877--36205911 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
36205867 ATTATTAAGA
*
36205877 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
36205894 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
36205912 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:36206025 original size:147 final size:149
Alignment explanation
Indices: 36205865--36206139 Score: 500
Period size: 147 Copynumber: 1.9 Consensus size: 149
36205855 ATAAGAATAT
* *
36205865 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
1 TAATTATTAAGAATTTTATTAAAATATATATTTTAATTAAAATATATTAAATAATAATTATGTTT
*
36205930 AAATATGATTAAATTATTTATTATTGAT-ATTAATAATCTTATTAAAATTTAAATAA-AATAATT
66 AAATATGATTAAATTATTTATTATTGATAATAAATAATCTTATTAAAATTTAAATAACAATAATT
36205993 TACCAAAACAAATTTCTGC
131 TACCAAAACAAATTTCTGC
36206012 TAATTATTAAGAATTTTATTAAAATATATATTTTAATTAAAATATATTAAATAATAATTATGTTT
1 TAATTATTAAGAATTTTATTAAAATATATATTTTAATTAAAATATATTAAATAATAATTATGTTT
*
36206077 AAATATGATTAAATTATTTATTTTTGATAATAAATAATCTTATTAAAATTTAAATAACAATAA
66 AAATATGATTAAATTATTTATTATTGATAATAAATAATCTTATTAAAATTTAAATAACAATAA
36206140 CAATAATCAT
Statistics
Matches: 122, Mismatches: 4, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
147 90 0.74
148 27 0.22
149 5 0.04
ACGTcount: A:0.48, C:0.03, G:0.03, T:0.46
Consensus pattern (149 bp):
TAATTATTAAGAATTTTATTAAAATATATATTTTAATTAAAATATATTAAATAATAATTATGTTT
AAATATGATTAAATTATTTATTATTGATAATAAATAATCTTATTAAAATTTAAATAACAATAATT
TACCAAAACAAATTTCTGC
Found at i:36206059 original size:16 final size:17
Alignment explanation
Indices: 36206024--36206058 Score: 61
Period size: 18 Copynumber: 2.0 Consensus size: 17
36206014 ATTATTAAGA
36206024 ATTTTATTAAAATATAT
1 ATTTTATTAAAATATAT
36206041 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
36206059 TAAATAATAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 5 0.29
18 12 0.71
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:36206269 original size:44 final size:45
Alignment explanation
Indices: 36206220--36206314 Score: 138
Period size: 45 Copynumber: 2.1 Consensus size: 45
36206210 TTACACCTCT
* *
36206220 ATTACATTCAACCAAACA-CAGTTTTACTATTACGCCTCTATTCC
1 ATTACATTCAACCAAACAGCAGATTTACTATTACACCTCTATTCC
** *
36206264 ATTACATTCAACCAAACAGTTGATTTGCTATTACACCTCTATTCC
1 ATTACATTCAACCAAACAGCAGATTTACTATTACACCTCTATTCC
36206309 ATTACA
1 ATTACA
36206315 CCTCTAATCC
Statistics
Matches: 45, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
44 18 0.40
45 27 0.60
ACGTcount: A:0.33, C:0.27, G:0.05, T:0.35
Consensus pattern (45 bp):
ATTACATTCAACCAAACAGCAGATTTACTATTACACCTCTATTCC
Found at i:36206314 original size:16 final size:16
Alignment explanation
Indices: 36206295--36206346 Score: 86
Period size: 16 Copynumber: 3.2 Consensus size: 16
36206285 GATTTGCTAT
* *
36206295 TACACCTCTATTCCAT
1 TACACCTCTAATCCAA
36206311 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
36206327 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
36206343 TACA
1 TACA
36206347 GCGAACCAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 34 1.00
ACGTcount: A:0.35, C:0.37, G:0.00, T:0.29
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:36206487 original size:16 final size:16
Alignment explanation
Indices: 36206466--36206533 Score: 127
Period size: 16 Copynumber: 4.2 Consensus size: 16
36206456 TTTGGTTCGC
*
36206466 TGTATTGGATTAGAGA
1 TGTATTGGATTAGAGG
36206482 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
36206498 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
36206514 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
36206530 TGTA
1 TGTA
36206534 ATAGCAAATC
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
16 51 1.00
ACGTcount: A:0.26, C:0.00, G:0.35, T:0.38
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:36206790 original size:18 final size:17
Alignment explanation
Indices: 36206769--36206803 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
36206759 TTATTATTAA
*
36206769 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
36206787 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
36206804 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:36206856 original size:157 final size:158
Alignment explanation
Indices: 36206663--36206971 Score: 539
Period size: 157 Copynumber: 2.0 Consensus size: 158
36206653 CCCTTAGCAT
*
36206663 AAATTTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTATTATCAA
1 AAATTTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTAATATCAA
* * * *
36206728 TAATAAATATTTTAATCATATTTAAACATAATTATTATTAAATATATTTTAAT-TAAAATATATA
66 TAATAAATAATTTAATCATATTTAAACATAATTATTATTAAAAACATTATAATATAAAATATATA
36206792 ATTTAATAAAATTCTTAATAATTACCAG
131 ATTTAATAAAATTCTTAATAATTACCAG
*
36206820 AAATTTGTTTTGGTAAATTATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTAATATCAA
1 AAATTTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTAATATCAA
* *
36206885 TAATAAATAATTTAATCATATTTTAACATAATTATTATTAAAAACATTATACTATAAAATATATA
66 TAATAAATAATTTAATCATATTTAAACATAATTATTATTAAAAACATTATAATATAAAATATATA
36206950 ATTTAATAAAATTCTTAATAAT
131 ATTTAATAAAATTCTTAATAAT
36206972 CAATATTCTT
Statistics
Matches: 143, Mismatches: 8, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
157 110 0.77
158 33 0.23
ACGTcount: A:0.44, C:0.04, G:0.05, T:0.47
Consensus pattern (158 bp):
AAATTTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTAATATCAA
TAATAAATAATTTAATCATATTTAAACATAATTATTATTAAAAACATTATAATATAAAATATATA
ATTTAATAAAATTCTTAATAATTACCAG
Found at i:36220072 original size:16 final size:16
Alignment explanation
Indices: 36220051--36220091 Score: 73
Period size: 16 Copynumber: 2.6 Consensus size: 16
36220041 ATGTTTGGTT
36220051 GGCTGTAATGGAATAG
1 GGCTGTAATGGAATAG
36220067 GGCTGTAATGGAATAG
1 GGCTGTAATGGAATAG
*
36220083 AGCTGTAAT
1 GGCTGTAAT
36220092 AAGTAATTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.32, C:0.07, G:0.34, T:0.27
Consensus pattern (16 bp):
GGCTGTAATGGAATAG
Found at i:36220531 original size:19 final size:19
Alignment explanation
Indices: 36220507--36220559 Score: 106
Period size: 19 Copynumber: 2.8 Consensus size: 19
36220497 AATTTATGAA
36220507 AAATGATTTACTTTTCTAG
1 AAATGATTTACTTTTCTAG
36220526 AAATGATTTACTTTTCTAG
1 AAATGATTTACTTTTCTAG
36220545 AAATGATTTACTTTT
1 AAATGATTTACTTTT
36220560 ATGGTGTTTG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 34 1.00
ACGTcount: A:0.32, C:0.09, G:0.09, T:0.49
Consensus pattern (19 bp):
AAATGATTTACTTTTCTAG
Found at i:36220920 original size:18 final size:18
Alignment explanation
Indices: 36220897--36220931 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
36220887 ATGTGGTAGT
*
36220897 CCAACTAGATTTTAAGTG
1 CCAACTAGATCTTAAGTG
36220915 CCAACTAGATCTTAAGT
1 CCAACTAGATCTTAAGT
36220932 ATATCTATTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.34, C:0.20, G:0.14, T:0.31
Consensus pattern (18 bp):
CCAACTAGATCTTAAGTG
Found at i:36220969 original size:20 final size:20
Alignment explanation
Indices: 36220946--36221009 Score: 53
Period size: 20 Copynumber: 3.2 Consensus size: 20
36220936 CTATTAATAC
36220946 ATACTTCATCCGGTTAAATT
1 ATACTTCATCCGGTTAAATT
* *
36220966 ATACAGTT--TTCTGTT-AATAT
1 ATAC--TTCATCCGGTTAAAT-T
*
36220986 ATACTTCATCCGGATAAATT
1 ATACTTCATCCGGTTAAATT
36221006 ATAC
1 ATAC
36221010 AGTTTTCTAT
Statistics
Matches: 33, Mismatches: 5, Indels: 12
0.66 0.10 0.24
Matches are distributed among these distances:
18 2 0.06
19 3 0.09
20 23 0.70
21 3 0.09
22 2 0.06
ACGTcount: A:0.33, C:0.17, G:0.09, T:0.41
Consensus pattern (20 bp):
ATACTTCATCCGGTTAAATT
Found at i:36220994 original size:40 final size:40
Alignment explanation
Indices: 36220935--36221115 Score: 281
Period size: 40 Copynumber: 4.5 Consensus size: 40
36220925 CTTAAGTATA
*
36220935 TCTATTAATACATACTTCATCCGGTTAAATTATACAGTTT
1 TCTATTAATACATACTTCATCCGGATAAATTATACAGTTT
* *
36220975 TCTGTTAATATATACTTCATCCGGATAAATTATACAGTTT
1 TCTATTAATACATACTTCATCCGGATAAATTATACAGTTT
* * *
36221015 TCTATTAATACATACTTTATTCGGGTAAATTATACAGTTT
1 TCTATTAATACATACTTCATCCGGATAAATTATACAGTTT
*
36221055 TCTATTAATACATACTTCATCCGGATCAATTATACAGTTT
1 TCTATTAATACATACTTCATCCGGATAAATTATACAGTTT
* *
36221095 TTTGTTAATACATACTTCATC
1 TCTATTAATACATACTTCATC
36221116 AGATTTTCTG
Statistics
Matches: 127, Mismatches: 14, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 127 1.00
ACGTcount: A:0.32, C:0.17, G:0.08, T:0.43
Consensus pattern (40 bp):
TCTATTAATACATACTTCATCCGGATAAATTATACAGTTT
Found at i:36231302 original size:34 final size:34
Alignment explanation
Indices: 36231231--36231311 Score: 92
Period size: 34 Copynumber: 2.4 Consensus size: 34
36231221 TGAAATGATT
*
36231231 TGTTATAAGCATATTATTTGCTACTGTGTTGAAC
1 TGTTATAAGCATATTATTTGCTACTGTATTGAAC
* * **
36231265 TGTTATAAGCATATTGA-TTGTTATTGTATTGTTC
1 TGTTATAAGCATATT-ATTTGCTACTGTATTGAAC
*
36231299 TGTTAAAAGCATA
1 TGTTATAAGCATA
36231312 ATTAAATGCT
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
34 39 0.98
35 1 0.03
ACGTcount: A:0.28, C:0.09, G:0.17, T:0.46
Consensus pattern (34 bp):
TGTTATAAGCATATTATTTGCTACTGTATTGAAC
Found at i:36231472 original size:44 final size:44
Alignment explanation
Indices: 36231409--36231606 Score: 252
Period size: 44 Copynumber: 4.5 Consensus size: 44
36231399 TTATCTGCAA
* * * *
36231409 ATTTGTTGTGCATCAACAACTAGAGGCAGATTCCATCTGCGGGT
1 ATTTGCTGTGTATCCACAACCAGAGGCAGATTCCATCTGCGGGT
* * *
36231453 ATTTGCTGTGTATCCACAACTAGAGGCAGATTCTATCTGTGGGT
1 ATTTGCTGTGTATCCACAACCAGAGGCAGATTCCATCTGCGGGT
* * * *
36231497 ATTTGCTCTGTATCCACAACCAAAGGCAGATTCCATTTGCAGGT
1 ATTTGCTGTGTATCCACAACCAGAGGCAGATTCCATCTGCGGGT
*
36231541 ATTTGCTCTGTATCCACAACCAGAGGCAGATTCCATCTGCGGGTT
1 ATTTGCTGTGTATCCACAACCAGAGGCAGATTCCATCTGCGGG-T
* * *
36231586 AATTGTTGTGCATCCACAACC
1 ATTTGCTGTGTATCCACAACC
36231607 TATTGACAGC
Statistics
Matches: 134, Mismatches: 19, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
44 116 0.87
45 18 0.13
ACGTcount: A:0.25, C:0.23, G:0.22, T:0.30
Consensus pattern (44 bp):
ATTTGCTGTGTATCCACAACCAGAGGCAGATTCCATCTGCGGGT
Found at i:36233270 original size:13 final size:14
Alignment explanation
Indices: 36233252--36233280 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
36233242 AAGTACTTCT
36233252 AATAAAAGAAA-AA
1 AATAAAAGAAATAA
36233265 AATAAAAGAAATAA
1 AATAAAAGAAATAA
36233279 AA
1 AA
36233281 AAGGTAAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.73
14 4 0.27
ACGTcount: A:0.83, C:0.00, G:0.07, T:0.10
Consensus pattern (14 bp):
AATAAAAGAAATAA
Found at i:36236314 original size:19 final size:18
Alignment explanation
Indices: 36236279--36236313 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
36236269 TTTAATTTTC
*
36236279 ATTCATAAAAATTATATA
1 ATTCATAAAAAATATATA
36236297 ATTCATAAAAAA-ATATA
1 ATTCATAAAAAATATATA
36236314 TTACAAACTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.60, C:0.06, G:0.00, T:0.34
Consensus pattern (18 bp):
ATTCATAAAAAATATATA
Found at i:36245995 original size:23 final size:23
Alignment explanation
Indices: 36245969--36246012 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
36245959 GTAATATACA
36245969 AAATAATACACATTAAT-TTAAAT
1 AAATAATACACA-TAATATTAAAT
*
36245992 AAATAATATACATAATATTAA
1 AAATAATACACATAATATTAA
36246013 GATTGAATAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 4 0.21
23 15 0.79
ACGTcount: A:0.59, C:0.07, G:0.00, T:0.34
Consensus pattern (23 bp):
AAATAATACACATAATATTAAAT
Found at i:36248185 original size:132 final size:131
Alignment explanation
Indices: 36248034--36248281 Score: 327
Period size: 132 Copynumber: 1.9 Consensus size: 131
36248024 CCCTTACTAC
* * * *
36248034 CTCAGGGAGATAAGGCTAGTGGCTTAAAT-TTTCTTCCCTACTACCTCGGGAAGATAAGATTCGC
1 CTCAGGGAGACAAGGCTAGTGGCTGAAATCTAT-TTCCCTACTACCTCGGGAAGATAAGATTCAC
* * *
36248098 CATCTTCGATCTGCTCCACTACTACTTTGGGAGACAAGATCTACAATCTTCAGCCTACTCTACTG
65 CATCTTCAATCTACTCCACTACTACTTAGGGAGACAAGATCT-CAATCTTCAGCCTACTCTACTG
36248163 CTG
129 CTG
* ** *
36248166 CTCAGGGAGGCAAGGCTAGTGGCTGAAATCTATTTCCCTACTATTTCGGGAAGATTAGATTCACC
1 CTCAGGGAGACAAGGCTAGTGGCTGAAATCTATTTCCCTACTACCTCGGGAAGATAAGATTCACC
* * * * *
36248231 GTCTTCAATCTACTCCACTACTGCTTAGGGATATAAGATCTGAATCTTCAG
66 ATCTTCAATCTACTCCACTACTACTTAGGGAGACAAGATCTCAATCTTCAG
36248282 TCTGCTTCAT
Statistics
Matches: 99, Mismatches: 16, Indels: 3
0.84 0.14 0.03
Matches are distributed among these distances:
131 9 0.09
132 88 0.89
133 2 0.02
ACGTcount: A:0.26, C:0.25, G:0.20, T:0.30
Consensus pattern (131 bp):
CTCAGGGAGACAAGGCTAGTGGCTGAAATCTATTTCCCTACTACCTCGGGAAGATAAGATTCACC
ATCTTCAATCTACTCCACTACTACTTAGGGAGACAAGATCTCAATCTTCAGCCTACTCTACTGCT
G
Found at i:36248321 original size:44 final size:44
Alignment explanation
Indices: 36248273--36248710 Score: 188
Period size: 44 Copynumber: 9.9 Consensus size: 44
36248263 ATAAGATCTG
* *
36248273 AATCTTCAGTCTGCTTCATTGCTACCTCAAGAAGATAAGACTAC
1 AATCTTCAGTCTGCTCCCTTGCTACCTCAAGAAGATAAGACTAC
* * * * * * **
36248317 AATCTTCGGCCTGCTCCCTTACTACCTTAGGAAGATAAGGCTGG
1 AATCTTCAGTCTGCTCCCTTGCTACCTCAAGAAGATAAGACTAC
*** ** * * * * *
36248361 TGGCTAAAATTTGCTCCCCTGTTACCTCGAA-AAGATAAGATTCAC
1 AATCTTCAGTCTGCTCCCTTGCTACCTC-AAGAAGATAAGACT-AC
** ** * * *
36248406 CGTCTTC-GATCTGCTCAGTT-CTATCTCAAGGAGATAAGATCTAG
1 AATCTTCAG-TCTGCTCCCTTGCTACCTCAAGAAGATAAGA-CTAC
* * * * *
36248450 AATCTTTAGTCTGCTTCCTTACTACATCAGGAAGATAAGACTAC
1 AATCTTCAGTCTGCTCCCTTGCTACCTCAAGAAGATAAGACTAC
* * * * * * **
36248494 AATCTTCGGCCTGCTCCCTTACTACCTCAGGGAGATAAGGCTGG
1 AATCTTCAGTCTGCTCCCTTGCTACCTCAAGAAGATAAGACTAC
*** ** * * * * **
36248538 TGGCTAAAATCTGCTCCCTTGTTACTTCAAGAAGATAAGATTTGT
1 AATCTTCAGTCTGCTCCCTTGCTACCTCAAGAAGATAAGA-CTAC
* * * *
36248583 GATCTTC-GATTTGCTCCAC-TGCTATCCT-AGGGAGATAAGATCTAC
1 AATCTTCAG-TCTGCTCC-CTTGCTA-CCTCAAGAAGATAAGA-CTAC
* *
36248628 AATCTTCAGTCTGCTTCCTTGCTACATCAAGAAGATAAGACTAC
1 AATCTTCAGTCTGCTCCCTTGCTACCTCAAGAAGATAAGACTAC
* * * *
36248672 AATCTTCGGCCTGCTCCGTTACTACCTC-AGAGAGATAAG
1 AATCTTCAGTCTGCTCCCTTGCTACCTCAAGA-AGATAAG
36248711 GCTGGTGGCT
Statistics
Matches: 275, Mismatches: 104, Indels: 30
0.67 0.25 0.07
Matches are distributed among these distances:
43 5 0.02
44 184 0.67
45 82 0.30
46 4 0.01
ACGTcount: A:0.27, C:0.25, G:0.18, T:0.30
Consensus pattern (44 bp):
AATCTTCAGTCTGCTCCCTTGCTACCTCAAGAAGATAAGACTAC
Found at i:36248797 original size:178 final size:174
Alignment explanation
Indices: 36248263--36248804 Score: 714
Period size: 178 Copynumber: 3.1 Consensus size: 174
36248253 GCTTAGGGAT
* *
36248263 ATAAGATCT-GAATCTTCAGTCTGCTTCATTGCTACCTCAAGAAGATAAGACTACAATCTTCGGC
1 ATAAGATCTAGAATCTTCAGTCTGCTTCCTTGCTACATCAAGAAGATAAGACTACAATCTTCGGC
* * *
36248327 CTGCTCCCTTACTACCTTAGGAAGATAAGGCTGGTGGCTAAAATTTGCTCCCCTGTTACCTCGAA
66 CTGCTCCCTTACTACCTCAGG-AGATAAGGCTGGTGGCTAAAATCTGCTCCCTTGTTACCTCG-A
*
36248392 AAGATAAGATTCACCG-TCTTCGATCTGCT-CAGTT-CTATCTCAAGGAG
129 AAGATAAGATT-A-TGATCTTCGATCTGCTCCA-TTGCTAT-TCAAGGAG
* * *
36248439 ATAAGATCTAGAATCTTTAGTCTGCTTCCTTACTACATCAGGAAGATAAGACTACAATCTTCGGC
1 ATAAGATCTAGAATCTTCAGTCTGCTTCCTTGCTACATCAAGAAGATAAGACTACAATCTTCGGC
* *
36248504 CTGCTCCCTTACTACCTCAGGGAGATAAGGCTGGTGGCTAAAATCTGCTCCCTTGTTACTTCAAG
66 CTGCTCCCTTACTACCTCA-GGAGATAAGGCTGGTGGCTAAAATCTGCTCCCTTGTTACCTCGA-
* * * * *
36248569 AAGATAAGATTTGTGATCTTCGATTTGCTCCACTGCTATCCTAGGGAG
129 AAGATAAGA-TTATGATCTTCGATCTGCTCCATTGCTATTC-AAGGAG
*
36248617 ATAAGATCTACAATCTTCAGTCTGCTTCCTTGCTACATCAAGAAGATAAGACTACAATCTTCGGC
1 ATAAGATCTAGAATCTTCAGTCTGCTTCCTTGCTACATCAAGAAGATAAGACTACAATCTTCGGC
* * *
36248682 CTGCTCCGTTACTACCTCAGAGAGATAAGGCTGGTGGCTAAAATCTGCTCGCTTGCTACCTCTGA
66 CTGCTCCCTTACTACCTCAG-GAGATAAGGCTGGTGGCTAAAATCTGCTCCCTTGTTACCTC-GA
* * *
36248747 AAGGTAAGATCTATGACCTTCGATCTGCTCCATTGCTACTTCATGGAG
129 AAGATAAGAT-TATGATCTTCGATCTGCTCCATTGCTA-TTCAAGGAG
*
36248795 ATAAAATCTA
1 ATAAGATCTA
36248805 TAAATTCATC
Statistics
Matches: 321, Mismatches: 33, Indels: 22
0.85 0.09 0.06
Matches are distributed among these distances:
176 11 0.03
177 130 0.40
178 177 0.55
179 3 0.01
ACGTcount: A:0.27, C:0.24, G:0.19, T:0.30
Consensus pattern (174 bp):
ATAAGATCTAGAATCTTCAGTCTGCTTCCTTGCTACATCAAGAAGATAAGACTACAATCTTCGGC
CTGCTCCCTTACTACCTCAGGAGATAAGGCTGGTGGCTAAAATCTGCTCCCTTGTTACCTCGAAA
GATAAGATTATGATCTTCGATCTGCTCCATTGCTATTCAAGGAG
Found at i:36258213 original size:28 final size:28
Alignment explanation
Indices: 36258173--36258229 Score: 105
Period size: 28 Copynumber: 2.0 Consensus size: 28
36258163 TCTAGAAAAG
*
36258173 CATTCGAATTAAGATTTTCAAAGGTTTT
1 CATTAGAATTAAGATTTTCAAAGGTTTT
36258201 CATTAGAATTAAGATTTTCAAAGGTTTT
1 CATTAGAATTAAGATTTTCAAAGGTTTT
36258229 C
1 C
36258230 TTCAATTGAA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.33, C:0.11, G:0.14, T:0.42
Consensus pattern (28 bp):
CATTAGAATTAAGATTTTCAAAGGTTTT
Found at i:36259791 original size:3 final size:3
Alignment explanation
Indices: 36259783--36259998 Score: 147
Period size: 3 Copynumber: 70.7 Consensus size: 3
36259773 GTTTATTTAC
* * * *
36259783 TTA TTA TTA -CA TTA TTAA TTAA TCTA TTA TTA TTG TTG TTA TTT TTA
1 TTA TTA TTA TTA TTA TT-A TT-A T-TA TTA TTA TTA TTA TTA TTA TTA
* * * * * * *
36259830 CTA TAA CTA TTA TTT TCTA TTA TTA TTA TTA TTA CTG TCA TTA TTA
1 TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * *
36259876 TTA CTA TTA TTA TTT TTA -TA TTA TTA TT- TATA TTAA TT- TTG TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TT-A TTA TTA TTA
* * *
36259920 TTA TTA TTA TTCC TGA TT- TTA TTA TTA TTAA TGTA TCA TTA TTA TTCA
1 TTA TTA TTA TT-A TTA TTA TTA TTA TTA TT-A T-TA TTA TTA TTA TT-A
36259968 TT- TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
36259999 TCTTATTTTG
Statistics
Matches: 167, Mismatches: 31, Indels: 30
0.73 0.14 0.13
Matches are distributed among these distances:
2 10 0.06
3 133 0.80
4 22 0.13
5 2 0.01
ACGTcount: A:0.30, C:0.06, G:0.03, T:0.62
Consensus pattern (3 bp):
TTA
Found at i:36263204 original size:2 final size:2
Alignment explanation
Indices: 36263197--36263235 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
36263187 TGTTAATACG
36263197 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
36263236 ACAAAGAGGA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:36265540 original size:25 final size:26
Alignment explanation
Indices: 36265480--36265528 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
36265470 ATTTGTTTTA
*
36265480 ATATTTG-TTT-TTATGTTTTTAAAT
1 ATATTTGATTTATTATATTTTTAAAT
36265504 ATATTTGATTTATTATATTTTTAAA
1 ATATTTGATTTATTATATTTTTAAA
36265529 ATTTTTTATT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 7 0.32
25 3 0.14
26 12 0.55
ACGTcount: A:0.31, C:0.00, G:0.06, T:0.63
Consensus pattern (26 bp):
ATATTTGATTTATTATATTTTTAAAT
Found at i:36267728 original size:30 final size:29
Alignment explanation
Indices: 36267690--36267747 Score: 71
Period size: 30 Copynumber: 2.0 Consensus size: 29
36267680 GAGAAGGATG
*
36267690 GAAAATGGCAACTCTGTTATGTCTGTAAC
1 GAAAATGGCAACTCTGTTACGTCTGTAAC
* * *
36267719 GAAAGATGGCAGCTTTGTTACGTTTGTAA
1 GAAA-ATGGCAACTCTGTTACGTCTGTAA
36267748 TGGGAAATGG
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
29 4 0.17
30 20 0.83
ACGTcount: A:0.29, C:0.14, G:0.24, T:0.33
Consensus pattern (29 bp):
GAAAATGGCAACTCTGTTACGTCTGTAAC
Found at i:36268962 original size:26 final size:26
Alignment explanation
Indices: 36268933--36269040 Score: 171
Period size: 26 Copynumber: 4.2 Consensus size: 26
36268923 GGGTACGAAT
*
36268933 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATATTCCA
* *
36268959 TGATAATGGATTTGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATATTCCA
36268985 TGATAATGGGTTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATATTCCA
* *
36269011 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATATTCCA
36269037 TGAT
1 TGAT
36269041 GGGCATTTCA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.32, C:0.07, G:0.23, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATATTCCA
Found at i:36270523 original size:28 final size:26
Alignment explanation
Indices: 36270481--36270551 Score: 70
Period size: 26 Copynumber: 2.7 Consensus size: 26
36270471 AAAAGTAGCT
* * *
36270481 AAATTACTATAATACCCCTATGTATGGA
1 AAATTACTGTTATACCCCTA-G-ATGCA
* *
36270509 AAATTACTGTTATACCTCTAGGTGCA
1 AAATTACTGTTATACCCCTAGATGCA
*
36270535 AAATTACCGTTATACCC
1 AAATTACTGTTATACCC
36270552 TTAGGGTTAA
Statistics
Matches: 36, Mismatches: 7, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
26 18 0.50
27 1 0.03
28 17 0.47
ACGTcount: A:0.35, C:0.21, G:0.11, T:0.32
Consensus pattern (26 bp):
AAATTACTGTTATACCCCTAGATGCA
Found at i:36270743 original size:54 final size:53
Alignment explanation
Indices: 36270661--36270800 Score: 208
Period size: 54 Copynumber: 2.6 Consensus size: 53
36270651 GGAAGCGTCT
36270661 TGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTACCACATATATCTGTTC
1 TGGTGGCTATGCCAC-ATTATCTGATCTGGTGGCTCTACCACATATATCTGTTC
* *
36270715 TGGTGGCTATGCCACGATTATCTGATCTGGTGGCTCTGCCACATATATCTGTTT
1 TGGTGGCTATGCCAC-ATTATCTGATCTGGTGGCTCTACCACATATATCTGTTC
* * *
36270769 TGGTGGCTCTGCCACAATATTTGTATCTGGTG
1 TGGTGGCTATGCCACATTATCTG-ATCTGGTG
36270801 ACTTCGTCAC
Statistics
Matches: 79, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
53 6 0.08
54 73 0.92
ACGTcount: A:0.18, C:0.22, G:0.24, T:0.36
Consensus pattern (53 bp):
TGGTGGCTATGCCACATTATCTGATCTGGTGGCTCTACCACATATATCTGTTC
Found at i:36270796 original size:32 final size:27
Alignment explanation
Indices: 36270661--36270800 Score: 169
Period size: 27 Copynumber: 5.2 Consensus size: 27
36270651 GGAAGCGTCT
*
36270661 TGGTGGCTATGCCACA-ATTATCTGATC
1 TGGTGGCTCTGCCACATA-TATCTGATC
* *
36270688 TGGTGGCTCTACCACATATATCTGTTC
1 TGGTGGCTCTGCCACATATATCTGATC
*
36270715 TGGTGGCTATGCCACGAT-TATCTGATC
1 TGGTGGCTCTGCCAC-ATATATCTGATC
* *
36270742 TGGTGGCTCTGCCACATATATCTGTTT
1 TGGTGGCTCTGCCACATATATCTGATC
*
36270769 TGGTGGCTCTGCCACA-ATATTTGTATC
1 TGGTGGCTCTGCCACATATATCTG-ATC
36270796 TGGTG
1 TGGTG
36270801 ACTTCGTCAC
Statistics
Matches: 97, Mismatches: 12, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
26 8 0.08
27 86 0.89
28 3 0.03
ACGTcount: A:0.18, C:0.22, G:0.24, T:0.36
Consensus pattern (27 bp):
TGGTGGCTCTGCCACATATATCTGATC
Found at i:36277056 original size:26 final size:26
Alignment explanation
Indices: 36277019--36277124 Score: 176
Period size: 26 Copynumber: 4.1 Consensus size: 26
36277009 GTACAAATTA
*
36277019 ATAATGGGTTAGGTAAATGTTCCATG
1 ATAATGGGTTAGGTAAATATTCCATG
*
36277045 ATAATGGATTAGGTAAATATTCCATG
1 ATAATGGGTTAGGTAAATATTCCATG
36277071 ATAATGGGTTAGGTAAATATTCCATG
1 ATAATGGGTTAGGTAAATATTCCATG
* *
36277097 ATAATGGTTTAGGTAAATGTTCCATG
1 ATAATGGGTTAGGTAAATATTCCATG
36277123 AT
1 AT
36277125 GGGCATTGCA
Statistics
Matches: 75, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.34, C:0.08, G:0.23, T:0.36
Consensus pattern (26 bp):
ATAATGGGTTAGGTAAATATTCCATG
Found at i:36279787 original size:19 final size:20
Alignment explanation
Indices: 36279763--36279800 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
36279753 GGTACCACCA
36279763 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
36279782 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
36279801 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:36280140 original size:93 final size:93
Alignment explanation
Indices: 36280030--36280200 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
36280020 GCCCCTAAGA
* *
36280030 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAATGAACTCAGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCAGACTCAACTCAA
*
36280095 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGCTCGGATGCCTAGTTACATCTCAC
* * * *
36280123 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCAGACTCAACTCAA
36280188 CGAGCTCGGATGC
66 CGAGCTCGGATGC
36280201 TCAACCATCC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCAGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCAC
Found at i:36280197 original size:46 final size:46
Alignment explanation
Indices: 36280025--36280197 Score: 181
Period size: 46 Copynumber: 3.7 Consensus size: 46
36280015 AACCCGCCCC
* * * *
36280025 TAAGAGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTTGCATCCA
* * * * *
36280071 TAAATGAACTCAGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGA---C-ATTTGCATCCA
* * *
36280119 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTTGCATCCA
36280164 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
36280198 TGCTCAACCA
Statistics
Matches: 103, Mismatches: 17, Indels: 14
0.77 0.13 0.10
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 57 0.55
47 28 0.27
48 2 0.02
49 2 0.02
50 4 0.04
ACGTcount: A:0.31, C:0.28, G:0.20, T:0.21
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTTGCATCCA
Found at i:36281572 original size:27 final size:26
Alignment explanation
Indices: 36281532--36281672 Score: 165
Period size: 27 Copynumber: 5.2 Consensus size: 26
36281522 AGGAAGCATC
*
36281532 CTGGTGGCTGTGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
*
36281559 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGAT
* *
36281586 CTGGTGGCTATGCCACGATTATCTAAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
* *
36281613 CTGGTGGCTCTGTCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGAT
* *
36281640 TTGGTGGCTCTGCCACAATATCTGTAT
1 CTGGTGGCTCTGCCACATTATCTG-AT
36281667 CTGGTG
1 CTGGTG
36281673 ACTTCGTCAC
Statistics
Matches: 96, Mismatches: 14, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
26 10 0.10
27 84 0.88
28 2 0.02
ACGTcount: A:0.17, C:0.23, G:0.24, T:0.36
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGAT
Found at i:36281682 original size:54 final size:53
Alignment explanation
Indices: 36281532--36281690 Score: 205
Period size: 54 Copynumber: 3.0 Consensus size: 53
36281522 AGGAAGCATC
* *
36281532 CTGGTGGCTGTGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCACAA-TATCTGATCTGGTGGCTCTGTCACATATATCTGTT
* *
36281586 CTGGTGGCTATGCCACGATTATCTAATCTGGTGGCTCTGTCACATATATCTGTT
1 CTGGTGGCTATGCCAC-AATATCTGATCTGGTGGCTCTGTCACATATATCTGTT
* * *
36281640 TTGGTGGCTCTGCCACAATATCTGTATCTGGTGACT-TCGTCACA-ATATCTG
1 CTGGTGGCTATGCCACAATATCTG-ATCTGGTGGCTCT-GTCACATATATCTG
36281691 GCAGCCTCGC
Statistics
Matches: 93, Mismatches: 9, Indels: 7
0.85 0.08 0.06
Matches are distributed among these distances:
53 14 0.15
54 78 0.84
55 1 0.01
ACGTcount: A:0.18, C:0.23, G:0.23, T:0.36
Consensus pattern (53 bp):
CTGGTGGCTATGCCACAATATCTGATCTGGTGGCTCTGTCACATATATCTGTT
Found at i:36281683 original size:27 final size:27
Alignment explanation
Indices: 36281532--36281690 Score: 148
Period size: 27 Copynumber: 5.9 Consensus size: 27
36281522 AGGAAGCATC
* *
36281532 CTGGTGGCTGTGCCACAATTATCTG-AT
1 CTGGTGGCTCTGTCACAA-TATCTGTAT
*
36281559 CTGGTGGCTCTGCCACATATATCTGT-T
1 CTGGTGGCTCTGTCACA-ATATCTGTAT
* * * *
36281586 CTGGTGGCTATGCCACGATTATCT-AAT
1 CTGGTGGCTCTGTCAC-AATATCTGTAT
36281613 CTGGTGGCTCTGTCACATATATCTGT-T
1 CTGGTGGCTCTGTCACA-ATATCTGTAT
* *
36281640 TTGGTGGCTCTGCCACAATATCTGTAT
1 CTGGTGGCTCTGTCACAATATCTGTAT
*
36281667 CTGGTGACT-TCGTCACAATATCTG
1 CTGGTGGCTCT-GTCACAATATCTG
36281691 GCAGCCTCGC
Statistics
Matches: 111, Mismatches: 13, Indels: 16
0.79 0.09 0.11
Matches are distributed among these distances:
26 10 0.09
27 99 0.89
28 2 0.02
ACGTcount: A:0.18, C:0.23, G:0.23, T:0.36
Consensus pattern (27 bp):
CTGGTGGCTCTGTCACAATATCTGTAT
Found at i:36283503 original size:18 final size:18
Alignment explanation
Indices: 36283469--36283566 Score: 90
Period size: 18 Copynumber: 5.4 Consensus size: 18
36283459 TCATTAACAA
* *
36283469 TCAG-AACAATTATTTAT
1 TCAGTAACAATCAGTTAT
*
36283486 TCAGTAACAGTCAGTTAT
1 TCAGTAACAATCAGTTAT
* * *
36283504 TCGGTAACAATAAATTAT
1 TCAGTAACAATCAGTTAT
* *
36283522 TCAATAATAATCAGTTAT
1 TCAGTAACAATCAGTTAT
* *
36283540 TCAGTAACAATTAAATTAT
1 TCAGTAACAA-TCAGTTAT
36283559 TCAGTAAC
1 TCAGTAAC
36283567 GTCGATCTTT
Statistics
Matches: 63, Mismatches: 16, Indels: 2
0.78 0.20 0.02
Matches are distributed among these distances:
17 4 0.06
18 45 0.71
19 14 0.22
ACGTcount: A:0.42, C:0.13, G:0.09, T:0.36
Consensus pattern (18 bp):
TCAGTAACAATCAGTTAT
Done.