Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100714657
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 3970000 characters in sequence are not A, C, G, or T
File 116 of 318
Found at i:36805135 original size:7 final size:7
Alignment explanation
Indices: 36805123--36805236 Score: 63
Period size: 7 Copynumber: 16.1 Consensus size: 7
36805113 ACTAATTAAT
36805123 CTAAACC
1 CTAAACC
36805130 CTAAACC
1 CTAAACC
*
36805137 TCTAATCC
1 -CTAAACC
*
36805145 CT-ATCC
1 CTAAACC
* **
36805151 TATAAATA
1 -CTAAACC
36805159 CTAAACC
1 CTAAACC
*
36805166 CTAAACT
1 CTAAACC
*
36805173 CTTAACC
1 CTAAACC
36805180 CTAAACCC
1 CTAAA-CC
* *
36805188 CTACACT
1 CTAAACC
*
36805195 TTAAACTC
1 CTAAAC-C
36805203 C--AACC
1 CTAAACC
36805208 CTAAACC
1 CTAAACC
36805215 CTAAACC
1 CTAAACC
* *
36805222 ATAATCC
1 CTAAACC
36805229 CTAAACC
1 CTAAACC
36805236 C
1 C
36805237 ATAATTCATC
Statistics
Matches: 78, Mismatches: 22, Indels: 14
0.68 0.19 0.12
Matches are distributed among these distances:
5 2 0.03
6 7 0.09
7 56 0.72
8 13 0.17
ACGTcount: A:0.39, C:0.39, G:0.00, T:0.23
Consensus pattern (7 bp):
CTAAACC
Found at i:36805230 original size:14 final size:15
Alignment explanation
Indices: 36805204--36805241 Score: 53
Period size: 14 Copynumber: 2.7 Consensus size: 15
36805194 TTTAAACTCC
*
36805204 AACCC-TAAACCCTA
1 AACCCATAATCCCTA
36805218 AA-CCATAATCCCTA
1 AACCCATAATCCCTA
36805232 AACCCATAAT
1 AACCCATAAT
36805242 TCATCATAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
13 2 0.10
14 12 0.57
15 7 0.33
ACGTcount: A:0.45, C:0.37, G:0.00, T:0.18
Consensus pattern (15 bp):
AACCCATAATCCCTA
Found at i:36805510 original size:21 final size:22
Alignment explanation
Indices: 36805471--36805547 Score: 79
Period size: 21 Copynumber: 3.6 Consensus size: 22
36805461 ATTAATTAAT
*
36805471 CTAAATCATAAACTCCTAATCC
1 CTAAACCATAAACTCCTAATCC
* *
36805493 CTAATCCATAATCT-CTAATCC
1 CTAAACCATAAACTCCTAATCC
*
36805514 CTAAACCATAAAC-CTTAAAT-C
1 CTAAACCATAAACTCCT-AATCC
*
36805535 CTAAAACATAAAC
1 CTAAACCATAAAC
36805548 CTTTAACCCT
Statistics
Matches: 46, Mismatches: 7, Indels: 5
0.79 0.12 0.09
Matches are distributed among these distances:
21 32 0.70
22 14 0.30
ACGTcount: A:0.44, C:0.30, G:0.00, T:0.26
Consensus pattern (22 bp):
CTAAACCATAAACTCCTAATCC
Found at i:36805548 original size:21 final size:21
Alignment explanation
Indices: 36805512--36805560 Score: 71
Period size: 21 Copynumber: 2.3 Consensus size: 21
36805502 AATCTCTAAT
*
36805512 CCCTAAACCATAAACCTTAAA
1 CCCTAAAACATAAACCTTAAA
* *
36805533 TCCTAAAACATAAACCTTTAA
1 CCCTAAAACATAAACCTTAAA
36805554 CCCTAAA
1 CCCTAAA
36805561 CCCCTACCCC
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.47, C:0.31, G:0.00, T:0.22
Consensus pattern (21 bp):
CCCTAAAACATAAACCTTAAA
Found at i:36805563 original size:7 final size:7
Alignment explanation
Indices: 36805479--36805611 Score: 63
Period size: 7 Copynumber: 19.0 Consensus size: 7
36805469 ATCTAAATCA
36805479 TAAACTCC
1 TAAAC-CC
*
36805487 TAATCCC
1 TAAACCC
* *
36805494 TAATCCA
1 TAAACCC
* *
36805501 TAATCTC
1 TAAACCC
*
36805508 TAATCCC
1 TAAACCC
*
36805515 TAAACCA
1 TAAACCC
*
36805522 TAAACCT
1 TAAACCC
*
36805529 TAAATCC
1 TAAACCC
* *
36805536 TAAAACA
1 TAAACCC
*
36805543 TAAACCT
1 TAAACCC
*
36805550 TTAACCC
1 TAAACCC
36805557 TAAACCCC
1 TAAA-CCC
*
36805565 T-ACCCC
1 TAAACCC
**
36805571 TAAACTT
1 TAAACCC
36805578 TAAACCC
1 TAAACCC
*
36805585 -CAACCC
1 TAAACCC
*
36805591 TAAACCG
1 TAAACCC
*
36805598 TAATCCC
1 TAAACCC
36805605 TAAACCC
1 TAAACCC
36805612 ATATTCCATA
Statistics
Matches: 93, Mismatches: 29, Indels: 7
0.72 0.22 0.05
Matches are distributed among these distances:
6 9 0.10
7 76 0.82
8 8 0.09
ACGTcount: A:0.39, C:0.37, G:0.01, T:0.23
Consensus pattern (7 bp):
TAAACCC
Found at i:36805593 original size:20 final size:21
Alignment explanation
Indices: 36805557--36805595 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
36805547 CCTTTAACCC
*
36805557 TAAACCCCTACCCCTAAACTT
1 TAAACCCCTAACCCTAAACTT
36805578 TAAACCCC-AACCCTAAAC
1 TAAACCCCTAACCCTAAAC
36805596 CGTAATCCCT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 9 0.53
21 8 0.47
ACGTcount: A:0.38, C:0.44, G:0.00, T:0.18
Consensus pattern (21 bp):
TAAACCCCTAACCCTAAACTT
Found at i:36808519 original size:64 final size:64
Alignment explanation
Indices: 36808446--36808656 Score: 151
Period size: 64 Copynumber: 3.2 Consensus size: 64
36808436 CTGGGCCAGA
*
36808446 GCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
1 GCCCATTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
* * * *** * * ** *
36808510 GCCCATTTCAAAATAC-ATGCAACATCAGTAAACATATGCAAGCC-TATTTGGGTAACAGTGGTA
1 GCCCATTTCAGATTACAAT--AA-A-CTG-GGCCTTA-GC--CCCTTATTCAGATAACA---GTA
*
36808573 CTGG-GC-TAG
55 -TGGCCCATAG
*
36808582 AGCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
1 -GCCCATTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
36808647 GCCCATTTCA
1 GCCCATTTCA
36808657 AAATACATGC
Statistics
Matches: 103, Mismatches: 27, Indels: 34
0.63 0.16 0.21
Matches are distributed among these distances:
63 5 0.05
64 26 0.25
65 5 0.05
66 3 0.03
67 12 0.12
68 5 0.05
69 5 0.05
70 12 0.12
71 3 0.03
72 5 0.05
73 17 0.17
74 5 0.05
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (64 bp):
GCCCATTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
Found at i:36808658 original size:137 final size:136
Alignment explanation
Indices: 36808423--36808681 Score: 491
Period size: 137 Copynumber: 1.9 Consensus size: 136
36808413 AGCCCATTCA
36808423 GGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATT
1 GGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATT
*
36808488 CAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAACATATGCAAGC
66 CAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAAT-AACATATGCAAGC
36808553 CTATTTG
130 CTATTTG
*
36808560 GGTAACAGTGGTACTGGGCTAGAGCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATT
1 GGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATT
36808625 CAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAACATA
66 CAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAACATA
36808682 CTCAACCCAC
Statistics
Matches: 120, Mismatches: 2, Indels: 1
0.98 0.02 0.01
Matches are distributed among these distances:
136 6 0.05
137 114 0.95
ACGTcount: A:0.32, C:0.24, G:0.19, T:0.25
Consensus pattern (136 bp):
GGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATT
CAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAACATATGCAAGCC
TATTTG
Found at i:36810490 original size:26 final size:26
Alignment explanation
Indices: 36810459--36810566 Score: 171
Period size: 26 Copynumber: 4.2 Consensus size: 26
36810449 TGAAATTCCC
*
36810459 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
36810485 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
36810511 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
36810537 GTCATGGAACATTTGCCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
36810563 ATCA
1 ATCA
36810567 ATTTGTATCA
Statistics
Matches: 74, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 74 1.00
ACGTcount: A:0.34, C:0.24, G:0.09, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:36810739 original size:10 final size:10
Alignment explanation
Indices: 36810724--36810751 Score: 56
Period size: 10 Copynumber: 2.8 Consensus size: 10
36810714 TAGCCTATAG
36810724 CATTTTCAAA
1 CATTTTCAAA
36810734 CATTTTCAAA
1 CATTTTCAAA
36810744 CATTTTCA
1 CATTTTCA
36810752 CATAGGTTCT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.36, C:0.21, G:0.00, T:0.43
Consensus pattern (10 bp):
CATTTTCAAA
Found at i:36815728 original size:64 final size:64
Alignment explanation
Indices: 36815655--36815865 Score: 142
Period size: 64 Copynumber: 3.2 Consensus size: 64
36815645 CTGGGCCAGA
*
36815655 GCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
1 GCCCATTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
* * * *** * ** * *
36815719 GCCCATTTCAAAATAC-ATGCAACATCAGTAAACATATGCAAGCCC--ATTTGGGTATCAGTGGT
1 GCCCATTTCAGATTACAAT--AA-A-CTG-GGCCTTA-GC---CCCTTATTCAGATAACA---GT
* *
36815781 ACTGGGCCAGA-
54 A-TGGCCCATAG
*
36815792 GCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
1 GCCCATTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
36815856 GCCCATTTCA
1 GCCCATTTCA
36815866 AAATACATGC
Statistics
Matches: 101, Mismatches: 29, Indels: 34
0.62 0.18 0.21
Matches are distributed among these distances:
63 9 0.09
64 25 0.25
65 5 0.05
66 1 0.01
67 10 0.10
68 5 0.05
69 5 0.05
70 10 0.10
71 1 0.01
72 5 0.05
73 16 0.16
74 9 0.09
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.27
Consensus pattern (64 bp):
GCCCATTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
Found at i:36815867 original size:137 final size:136
Alignment explanation
Indices: 36815621--36815890 Score: 495
Period size: 137 Copynumber: 2.0 Consensus size: 136
36815611 CATTGGGCCT
36815621 AAGCCCATTCAGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTCAGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
*
36815686 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAAT-AA
36815751 CATATGC
130 CATATGC
** *
36815758 AAGCCCATTTGGGTATCAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTCAGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
36815823 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAC
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAC
36815888 ATA
131 ATA
36815891 CTCAACCCAC
Statistics
Matches: 129, Mismatches: 4, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
136 6 0.05
137 123 0.95
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.25
Consensus pattern (136 bp):
AAGCCCATTCAGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAC
ATATGC
Found at i:36817704 original size:26 final size:26
Alignment explanation
Indices: 36817668--36817774 Score: 178
Period size: 26 Copynumber: 4.1 Consensus size: 26
36817658 GAAATTCCCG
*
36817668 TCATGGAACATTTACCTAAACCATTA
1 TCATGGAACATTTACCTAACCCATTA
36817694 TCATGGAACATTTACCTAACCCATTA
1 TCATGGAACATTTACCTAACCCATTA
* * *
36817720 TCATGGAATATTTACCTAATCCATTG
1 TCATGGAACATTTACCTAACCCATTA
36817746 TCATGGAACATTTACCTAACCCATTA
1 TCATGGAACATTTACCTAACCCATTA
36817772 TCA
1 TCA
36817775 ATTTGTATCA
Statistics
Matches: 74, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 74 1.00
ACGTcount: A:0.35, C:0.24, G:0.08, T:0.33
Consensus pattern (26 bp):
TCATGGAACATTTACCTAACCCATTA
Found at i:36817947 original size:10 final size:10
Alignment explanation
Indices: 36817932--36817959 Score: 56
Period size: 10 Copynumber: 2.8 Consensus size: 10
36817922 TAGCCTATAG
36817932 CATTTTCAAA
1 CATTTTCAAA
36817942 CATTTTCAAA
1 CATTTTCAAA
36817952 CATTTTCA
1 CATTTTCA
36817960 CATAGGTTCT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.36, C:0.21, G:0.00, T:0.43
Consensus pattern (10 bp):
CATTTTCAAA
Found at i:36818246 original size:18 final size:18
Alignment explanation
Indices: 36818223--36818284 Score: 54
Period size: 18 Copynumber: 3.3 Consensus size: 18
36818213 TTATTGTCGA
36818223 AAAATATATAAATATTAT
1 AAAATATATAAATATTAT
* * * *
36818241 AAAATA-ATTATTTTGTACGA
1 AAAATATATAAATAT-TA--T
36818261 AAAATATATAAATATTAT
1 AAAATATATAAATATTAT
36818279 AAAATA
1 AAAATA
36818285 ATTATTTTGT
Statistics
Matches: 32, Mismatches: 8, Indels: 8
0.67 0.17 0.17
Matches are distributed among these distances:
17 5 0.16
18 14 0.44
20 8 0.25
21 5 0.16
ACGTcount: A:0.58, C:0.02, G:0.03, T:0.37
Consensus pattern (18 bp):
AAAATATATAAATATTAT
Found at i:36818264 original size:38 final size:38
Alignment explanation
Indices: 36818216--36818296 Score: 155
Period size: 38 Copynumber: 2.2 Consensus size: 38
36818206 GGTAAAATTA
36818216 TTGT-CGAAAAATATATAAATATTATAAAATAATTATT
1 TTGTACGAAAAATATATAAATATTATAAAATAATTATT
36818253 TTGTACGAAAAATATATAAATATTATAAAATAATTATT
1 TTGTACGAAAAATATATAAATATTATAAAATAATTATT
36818291 TTGTAC
1 TTGTAC
36818297 TTAAATTATT
Statistics
Matches: 43, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
37 4 0.09
38 39 0.91
ACGTcount: A:0.49, C:0.04, G:0.06, T:0.41
Consensus pattern (38 bp):
TTGTACGAAAAATATATAAATATTATAAAATAATTATT
Found at i:36818335 original size:22 final size:22
Alignment explanation
Indices: 36818310--36818353 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
36818300 AATTATTAAC
*
36818310 ATAATGAATTTTAATTAATTTT
1 ATAATAAATTTTAATTAATTTT
* *
36818332 ATAATAAATTTTGATTATTTTT
1 ATAATAAATTTTAATTAATTTT
36818354 TATTATTTTC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.39, C:0.00, G:0.05, T:0.57
Consensus pattern (22 bp):
ATAATAAATTTTAATTAATTTT
Found at i:36819245 original size:9 final size:9
Alignment explanation
Indices: 36819231--36819257 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
36819221 TTTTGTTTGC
36819231 TAAAATTGT
1 TAAAATTGT
36819240 TAAAATTGT
1 TAAAATTGT
36819249 TAAAATTGT
1 TAAAATTGT
36819258 GTTTATGTTG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.44, C:0.00, G:0.11, T:0.44
Consensus pattern (9 bp):
TAAAATTGT
Found at i:36820432 original size:23 final size:22
Alignment explanation
Indices: 36820409--36820453 Score: 54
Period size: 25 Copynumber: 1.9 Consensus size: 22
36820399 ATATTATTTA
36820409 TATTTGTTATATCTATTTACTTATT
1 TATTTGTTAT-TCT-TTTACTTA-T
*
36820434 TGTTTGTTATTCTTTTACTT
1 TATTTGTTATTCTTTTACTT
36820454 TTCAAATACC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
23 7 0.37
24 3 0.16
25 9 0.47
ACGTcount: A:0.18, C:0.09, G:0.07, T:0.67
Consensus pattern (22 bp):
TATTTGTTATTCTTTTACTTAT
Found at i:36820484 original size:73 final size:72
Alignment explanation
Indices: 36820333--36820757 Score: 438
Period size: 73 Copynumber: 6.1 Consensus size: 72
36820323 ATTTCATCTT
* * *
36820333 TTTATATTTGTTCTATTTATTTATTTATTTATTTATTATTC-TTTACTTTTTAACA-ACCTAAAT
1 TTTATATTTGTTATATCTATTTA-TTATTTATTTATTATTCTTTTACTTTTTAA-ATACTTAAAT
36820396 TTAATATTA
64 TTAATATTA
* * * *
36820405 TTTATATTTGTTATATCTATTTACTTATTTGTTTGTTATTCTTTTACTTTTCAAATACCTAAATT
1 TTTATATTTGTTATATCTATTTA-TTATTTATTTATTATTCTTTTACTTTTTAAATACTTAAATT
36820470 TAATATTA
65 TAATATTA
*
36820478 TTTATATTTG-T-T-T-TA--T-TTATTTATTTATTATTC-TTTAGCTTTTTAAAGACTTAAATT
1 TTTATATTTGTTATATCTATTTATTATTTATTTATTATTCTTTTA-CTTTTTAAATACTTAAATT
36820535 TAATATTA
65 TAATATTA
* *
36820543 TTTATATTTATTATATCTATTTATTAATTTGTTTATTATTCTTTTACTTTTTTAAATACTTAAAT
1 TTTATATTTGTTATATCTATTTATT-ATTTATTTATTATTCTTTTAC-TTTTTAAATACTTAAAT
*
36820608 TTAACATTA
64 TTAATATTA
* * ** * *
36820617 TTTGTATTTGTTTTATC--GCT-TTATTTATTTATTATTCTTTTAATTCTTAAATACTTAAATTT
1 TTTATATTTGTTATATCTATTTATTATTTATTTATTATTCTTTTACTTTTTAAATACTTAAATTT
36820679 AATATTA
66 AATATTA
* * * * *
36820686 --TCTATTTGTTTTATCTATTTATTCATTTA-TTA-T-TT-TTTTACTCTTTAAATATTTTAATT
1 TTTATATTTGTTATATCTATTTATT-ATTTATTTATTATTCTTTTACTTTTTAAATACTTAAATT
*
36820745 TGATATTA
65 TAATATTA
*
36820753 CTTAT
1 TTTAT
36820758 GCTTCCTTTT
Statistics
Matches: 300, Mismatches: 34, Indels: 41
0.80 0.09 0.11
Matches are distributed among these distances:
64 4 0.01
65 48 0.16
66 1 0.00
67 42 0.14
68 3 0.01
69 32 0.11
70 25 0.08
71 9 0.03
72 41 0.14
73 53 0.18
74 42 0.14
ACGTcount: A:0.28, C:0.08, G:0.03, T:0.61
Consensus pattern (72 bp):
TTTATATTTGTTATATCTATTTATTATTTATTTATTATTCTTTTACTTTTTAAATACTTAAATTT
AATATTA
Found at i:36820510 original size:65 final size:64
Alignment explanation
Indices: 36820424--36820757 Score: 294
Period size: 65 Copynumber: 4.9 Consensus size: 64
36820414 GTTATATCTA
* * * *
36820424 TTTACTTATTTGTTTGTTATTCTTTTACTTTTCAAATACCTAAATTTAATATTATTTATATTTGT
1 TTTATTTATTTATTTATTATTCTTTTACTTTT-AAATACTTAAATTTAATATTATTTATATTTGT
*
36820489 TTTATTTATTTATTTATTATTC-TTTAGCTTTTTAAAGACTTAAATTTAATATTATTTATATTTA
1 TTTATTTATTTATTTATTATTCTTTTA-C-TTTTAAATACTTAAATTTAATATTATTTATATTT-
*
36820553 TT
63 GT
* *
36820555 ATATCTATTTATTAATTTGTTTATTATTCTTTTACTTTTTTAAATACTTAAATTTAACATTATTT
1 -T-T-TA--T-TT-ATTTATTTATTATTCTTTTAC--TTTTAAATACTTAAATTTAATATTATTT
*
36820620 GTATTTGT
57 ATATTTGT
* *
36820628 TTTATCGCTTTATTTATTTATTATTCTTTTAATTCTTAAATACTTAAATTTAATATTATCTAT-T
1 TTTA----TTTATTTATTTATTATTCTTTTACTT-TTAAATACTTAAATTTAATATTATTTATAT
*
36820692 TGTTT
61 T-TGT
* * * * * *
36820697 TATCTATTTATTCATTTATTATTTTTTTACTCTTTAAATATTTTAATTTGATATTACTTAT
1 T-T-TATTTATTTATTTATTATTCTTTTACT-TTTAAATACTTAAATTTAATATTATTTAT
36820758 GCTTCCTTTT
Statistics
Matches: 223, Mismatches: 27, Indels: 36
0.78 0.09 0.13
Matches are distributed among these distances:
64 4 0.02
65 48 0.22
66 5 0.02
67 46 0.21
68 6 0.03
69 30 0.13
70 22 0.10
71 6 0.03
72 4 0.02
73 16 0.07
74 36 0.16
ACGTcount: A:0.28, C:0.07, G:0.03, T:0.61
Consensus pattern (64 bp):
TTTATTTATTTATTTATTATTCTTTTACTTTTAAATACTTAAATTTAATATTATTTATATTTGT
Found at i:36820538 original size:138 final size:137
Alignment explanation
Indices: 36820352--36820713 Score: 498
Period size: 138 Copynumber: 2.6 Consensus size: 137
36820342 GTTCTATTTA
*
36820352 TTTATTTATTTATTTATTATTCTTTACTTTTTAACAACCTAAATTTAATATTATTTATATTTGTT
1 TTTATTTATTTATTTATTATTCTTTACTTTTTAA-AACTTAAATTTAATATTATTTATATTTGTT
* *
36820417 ATATCTATTTACTT-ATTTGTTTGTTATTCTTTTAC-TTTTCAAATACCTAAATTTAATATTATT
65 ATATCTATTTA-TTAATTTGTTTATTATTCTTTTACTTTTTCAAATACCTAAATTTAACATTATT
36820480 TATATTTGT
129 TATATTTGT
*
36820489 TTTATTTATTTATTTATTATTCTTTAGCTTTTTAAAGACTTAAATTTAATATTATTTATATTTAT
1 TTTATTTATTTATTTATTATTCTTTA-CTTTTTAAA-ACTTAAATTTAATATTATTTATATTTGT
* *
36820554 TATATCTATTTATTAATTTGTTTATTATTCTTTTACTTTTTTAAATACTTAAATTTAACATTATT
64 TATATCTATTTATTAATTTGTTTATTATTCTTTTACTTTTTCAAATACCTAAATTTAACATTATT
*
36820619 TGTATTTGT
129 TATATTTGT
* * *
36820628 TTTATCGCTTTATTTATTTATTATTCTTTTAATTCTTAAATACTTAAATTTAATATTA--TCTAT
1 TTTA----TTTATTTATTTATTATTC-TTTACTTTTTAAA-ACTTAAATTTAATATTATTTATAT
* *
36820691 TTGTTTTATCTATTTATTCATTT
60 TTGTTATATCTATTTATTAATTT
36820714 ATTATTTTTT
Statistics
Matches: 202, Mismatches: 14, Indels: 14
0.88 0.06 0.06
Matches are distributed among these distances:
137 29 0.14
138 66 0.33
139 37 0.18
141 24 0.12
143 42 0.21
144 4 0.02
ACGTcount: A:0.28, C:0.08, G:0.03, T:0.61
Consensus pattern (137 bp):
TTTATTTATTTATTTATTATTCTTTACTTTTTAAAACTTAAATTTAATATTATTTATATTTGTTA
TATCTATTTATTAATTTGTTTATTATTCTTTTACTTTTTCAAATACCTAAATTTAACATTATTTA
TATTTGT
Found at i:36828167 original size:22 final size:23
Alignment explanation
Indices: 36828129--36828173 Score: 83
Period size: 22 Copynumber: 2.0 Consensus size: 23
36828119 GGATTTGTGG
36828129 GAGGAAAATAAAAGGGTGGTTAT
1 GAGGAAAATAAAAGGGTGGTTAT
36828152 GAGGAAAAT-AAAGGGTGGTTAT
1 GAGGAAAATAAAAGGGTGGTTAT
36828174 CTCATCTTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
22 13 0.59
23 9 0.41
ACGTcount: A:0.42, C:0.00, G:0.36, T:0.22
Consensus pattern (23 bp):
GAGGAAAATAAAAGGGTGGTTAT
Found at i:36832957 original size:53 final size:53
Alignment explanation
Indices: 36832877--36832984 Score: 189
Period size: 53 Copynumber: 2.0 Consensus size: 53
36832867 ACTTGGGCAT
* **
36832877 TATAGCACGAAATGTCAATCTGTTGCCAATCAACTACGAGTCATGGTATCATA
1 TATAGCACAAAATACCAATCTGTTGCCAATCAACTACGAGTCATGGTATCATA
36832930 TATAGCACAAAATACCAATCTGTTGCCAATCAACTACGAGTCATGGTATCATA
1 TATAGCACAAAATACCAATCTGTTGCCAATCAACTACGAGTCATGGTATCATA
36832983 TA
1 TA
36832985 CCTGATAGTA
Statistics
Matches: 52, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
53 52 1.00
ACGTcount: A:0.36, C:0.21, G:0.15, T:0.28
Consensus pattern (53 bp):
TATAGCACAAAATACCAATCTGTTGCCAATCAACTACGAGTCATGGTATCATA
Found at i:36834183 original size:63 final size:65
Alignment explanation
Indices: 36834083--36834217 Score: 168
Period size: 63 Copynumber: 2.1 Consensus size: 65
36834073 GCAAATTGCT
* * *
36834083 CAACTTAAAGCGGAGGCAGCATCGAGAGAAGTAGAGGCTCAA-AGAAAATA-T-GAACTCCAGCT
1 CAACTTAAAGCGGAGGCAGCAGCGAGAGAAGCAGAGGC-AAACAGAAAATAGTCGAACTCCAGCT
36834145 A
65 A
* * * *
36834146 CAACTTAAAGTGGATGTAGCAGCGAGGGAAGCAGAGGCAAACAGAAAATATGTCGAACTCCAGCT
1 CAACTTAAAGCGGAGGCAGCAGCGAGAGAAGCAGAGGCAAACAGAAAATA-GTCGAACTCCAGCT
36834211 A
65 A
36834212 CAACTT
1 CAACTT
36834218 CAGAATATGA
Statistics
Matches: 61, Mismatches: 7, Indels: 5
0.84 0.10 0.07
Matches are distributed among these distances:
62 2 0.03
63 40 0.66
65 1 0.02
66 18 0.30
ACGTcount: A:0.40, C:0.19, G:0.25, T:0.16
Consensus pattern (65 bp):
CAACTTAAAGCGGAGGCAGCAGCGAGAGAAGCAGAGGCAAACAGAAAATAGTCGAACTCCAGCTA
Found at i:36842682 original size:37 final size:37
Alignment explanation
Indices: 36842641--36842711 Score: 142
Period size: 37 Copynumber: 1.9 Consensus size: 37
36842631 CTGAGTTTCT
36842641 TGTGTGCTAATTTGGAAGATCAAATTCCCAAGTTGAA
1 TGTGTGCTAATTTGGAAGATCAAATTCCCAAGTTGAA
36842678 TGTGTGCTAATTTGGAAGATCAAATTCCCAAGTT
1 TGTGTGCTAATTTGGAAGATCAAATTCCCAAGTT
36842712 CCAGAAAGTT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 34 1.00
ACGTcount: A:0.31, C:0.14, G:0.21, T:0.34
Consensus pattern (37 bp):
TGTGTGCTAATTTGGAAGATCAAATTCCCAAGTTGAA
Found at i:36845684 original size:14 final size:14
Alignment explanation
Indices: 36845665--36845692 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
36845655 TCCCCAACCC
36845665 TGGTTAAAAGGCTA
1 TGGTTAAAAGGCTA
36845679 TGGTTAAAAGGCTA
1 TGGTTAAAAGGCTA
36845693 GGCAAAAACA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.07, G:0.29, T:0.29
Consensus pattern (14 bp):
TGGTTAAAAGGCTA
Found at i:36847812 original size:17 final size:17
Alignment explanation
Indices: 36847772--36847804 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
36847762 CTCCAAAAGT
36847772 GCTTTTGGAAAAAAATA
1 GCTTTTGGAAAAAAATA
*
36847789 GCTTTTGTAAAAAAAT
1 GCTTTTGGAAAAAAAT
36847805 CACTTTTGAG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.45, C:0.06, G:0.15, T:0.33
Consensus pattern (17 bp):
GCTTTTGGAAAAAAATA
Found at i:36861198 original size:74 final size:74
Alignment explanation
Indices: 36861077--36861224 Score: 269
Period size: 74 Copynumber: 2.0 Consensus size: 74
36861067 AACAGATACA
* * *
36861077 CAAAAGAACCATCACTGTTTTTCTTAAAGTAAACACAACTTTCAAAACTACTTCTTTTGAAATCA
1 CAAAAGAACCATCAATGTTTTTCTTAAAGTAAACACAACTGTCAAAACTACTTCTTTTAAAATCA
36861142 TGAGAAGTC
66 TGAGAAGTC
36861151 CAAAAGAACCATCAATGTTTTTCTTAAAGTAAACACAACTGTCAAAACTACTTCTTTTAAAATCA
1 CAAAAGAACCATCAATGTTTTTCTTAAAGTAAACACAACTGTCAAAACTACTTCTTTTAAAATCA
36861216 TGAGAAGTC
66 TGAGAAGTC
36861225 ATAAATGAAT
Statistics
Matches: 71, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
74 71 1.00
ACGTcount: A:0.41, C:0.20, G:0.09, T:0.30
Consensus pattern (74 bp):
CAAAAGAACCATCAATGTTTTTCTTAAAGTAAACACAACTGTCAAAACTACTTCTTTTAAAATCA
TGAGAAGTC
Found at i:36866600 original size:35 final size:35
Alignment explanation
Indices: 36866561--36866636 Score: 98
Period size: 35 Copynumber: 2.2 Consensus size: 35
36866551 CCCCTTTCGA
** ** *
36866561 GGTGTCGCCTTAAAGGACTTGTATACCATTTACAT
1 GGTGTCGCCCCAAAGGACTTACATACCATTTACAC
*
36866596 GGTGTCGCCCCGAAGGACTTACATACCATTTACAC
1 GGTGTCGCCCCAAAGGACTTACATACCATTTACAC
36866631 GGTGTC
1 GGTGTC
36866637 ACGTCGAAAA
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.24, C:0.25, G:0.22, T:0.29
Consensus pattern (35 bp):
GGTGTCGCCCCAAAGGACTTACATACCATTTACAC
Found at i:36876733 original size:19 final size:19
Alignment explanation
Indices: 36876709--36876789 Score: 135
Period size: 19 Copynumber: 4.2 Consensus size: 19
36876699 AATCTTTAAG
*
36876709 GATATGCAATCTTAGAGAT
1 GATATGCAATCTTAGATAT
36876728 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
36876747 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
36876766 GATATGCAATCTTGAAGATAT
1 GATATGCAATCTT--AGATAT
36876787 GAT
1 GAT
36876790 CTTGTAATCT
Statistics
Matches: 59, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
19 50 0.85
21 9 0.15
ACGTcount: A:0.37, C:0.10, G:0.19, T:0.35
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:36882377 original size:10 final size:9
Alignment explanation
Indices: 36882363--36882396 Score: 52
Period size: 8 Copynumber: 3.8 Consensus size: 9
36882353 TCTATTTCAA
36882363 AAAAAAAGG
1 AAAAAAAGG
36882372 AAAAAAA-G
1 AAAAAAAGG
36882380 AAAAAAAGAG
1 AAAAAAAG-G
36882390 AAAAAAA
1 AAAAAAA
36882397 TAAAAAGAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
8 8 0.35
9 7 0.30
10 8 0.35
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (9 bp):
AAAAAAAGG
Found at i:36882385 original size:18 final size:19
Alignment explanation
Indices: 36882362--36882423 Score: 65
Period size: 21 Copynumber: 3.3 Consensus size: 19
36882352 TTCTATTTCA
36882362 AAAAAAAAG-GAAAAAAAG
1 AAAAAAAAGAGAAAAAAAG
*
36882380 -AAAAAAAGAGAAAAAAAT
1 AAAAAAAAGAGAAAAAAAG
* *
36882398 AAAAAGAAAAAGAGAAAAATG
1 AAAAA-AAAGAGA-AAAAAAG
36882419 AAAAA
1 AAAAA
36882424 GAAAAATGGA
Statistics
Matches: 36, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
17 8 0.22
18 8 0.22
19 4 0.11
20 6 0.17
21 10 0.28
ACGTcount: A:0.82, C:0.00, G:0.15, T:0.03
Consensus pattern (19 bp):
AAAAAAAAGAGAAAAAAAG
Found at i:36882393 original size:15 final size:14
Alignment explanation
Indices: 36882374--36882429 Score: 67
Period size: 15 Copynumber: 3.8 Consensus size: 14
36882364 AAAAAAGGAA
36882374 AAAAAGAAAAAAAG
1 AAAAAGAAAAAAAG
*
36882388 AGAAAAAAATAAAAAG
1 A-AAAAGAA-AAAAAG
*
36882404 AAAAAGAGAAAAATG
1 AAAAAGA-AAAAAAG
36882419 AAAAAGAAAAA
1 AAAAAGAAAAA
36882430 TGGAGAGGCC
Statistics
Matches: 36, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
14 5 0.14
15 23 0.64
16 8 0.22
ACGTcount: A:0.82, C:0.00, G:0.14, T:0.04
Consensus pattern (14 bp):
AAAAAGAAAAAAAG
Found at i:36882396 original size:21 final size:21
Alignment explanation
Indices: 36882372--36882429 Score: 73
Period size: 22 Copynumber: 2.6 Consensus size: 21
36882362 AAAAAAAAGG
36882372 AAAAAAAGAAAAAAAGAGAAA
1 AAAAAAAGAAAAAAAGAGAAA
36882393 AAAATAAA-AAGAAAAAGAGAAA
1 AAAA-AAAGAA-AAAAAGAGAAA
36882415 AATGAAAAAGAAAAA
1 AA--AAAAAGAAAAA
36882430 TGGAGAGGCC
Statistics
Matches: 32, Mismatches: 0, Indels: 8
0.80 0.00 0.20
Matches are distributed among these distances:
21 6 0.19
22 16 0.50
23 6 0.19
24 4 0.12
ACGTcount: A:0.83, C:0.00, G:0.14, T:0.03
Consensus pattern (21 bp):
AAAAAAAGAAAAAAAGAGAAA
Found at i:36882407 original size:22 final size:21
Alignment explanation
Indices: 36882382--36882429 Score: 71
Period size: 21 Copynumber: 2.2 Consensus size: 21
36882372 AAAAAAAGAA
36882382 AAAAAGAGAAAAAAAT-AAAAAG
1 AAAAAGAG--AAAAATGAAAAAG
36882404 AAAAAGAGAAAAATGAAAAAG
1 AAAAAGAGAAAAATGAAAAAG
36882425 AAAAA
1 AAAAA
36882430 TGGAGAGGCC
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
20 6 0.24
21 11 0.44
22 8 0.32
ACGTcount: A:0.81, C:0.00, G:0.15, T:0.04
Consensus pattern (21 bp):
AAAAAGAGAAAAATGAAAAAG
Found at i:36882413 original size:8 final size:8
Alignment explanation
Indices: 36882374--36882429 Score: 50
Period size: 7 Copynumber: 7.5 Consensus size: 8
36882364 AAAAAAGGAA
*
36882374 AAAAAGAA
1 AAAAAGAG
36882382 AAAAAGAG
1 AAAAAGAG
36882390 AAAAA-A-
1 AAAAAGAG
36882396 ATAAAA-AG
1 A-AAAAGAG
36882404 AAAAAGAG
1 AAAAAGAG
*
36882412 AAAAA-TG
1 AAAAAGAG
36882419 AAAAAGA-
1 AAAAAGAG
36882426 AAAA
1 AAAA
36882430 TGGAGAGGCC
Statistics
Matches: 41, Mismatches: 3, Indels: 9
0.77 0.06 0.17
Matches are distributed among these distances:
6 1 0.02
7 20 0.49
8 20 0.49
ACGTcount: A:0.82, C:0.00, G:0.14, T:0.04
Consensus pattern (8 bp):
AAAAAGAG
Found at i:36882430 original size:13 final size:14
Alignment explanation
Indices: 36882391--36882431 Score: 50
Period size: 13 Copynumber: 3.0 Consensus size: 14
36882381 AAAAAAGAGA
*
36882391 AAAAAATAAAAA-G
1 AAAAAAGAAAAATG
36882404 AAAAAGAGAAAAATG
1 AAAAA-AGAAAAATG
36882419 -AAAAAGAAAAATG
1 AAAAAAGAAAAATG
36882432 GAGAGGCCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
13 14 0.56
14 10 0.40
15 1 0.04
ACGTcount: A:0.78, C:0.00, G:0.15, T:0.07
Consensus pattern (14 bp):
AAAAAAGAAAAATG
Found at i:36883481 original size:44 final size:44
Alignment explanation
Indices: 36883373--36883885 Score: 443
Period size: 44 Copynumber: 11.7 Consensus size: 44
36883363 GAAGATTTAA
**
36883373 ACTTGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATTTCAG
1 ACTTGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGCAG
* *
36883417 -CATGGCATCCCTGTGTTTATAGAGAACAAGTTGAAGATAGCAG
1 ACTTGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGCAG
* *
36883460 ACTTGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGCAG
1 ACTTGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGCAG
* * * * * * **
36883504 A-TCTGACATTCCTGTGCTTACAGCGAAGC-AGATCGAAGATTTCAG
1 ACT-TGGCATCCCTGTGTTTATAGGGAA-CAAG-TTGAAGATAGCAG
*
36883549 -CATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGCAG
1 ACTTGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGCAG
* * *
36883592 ACTTGGCATCCCTGTGTTTATAAGGAACAAATCGAAGATAGCAG
1 ACTTGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGCAG
** * * * * * **
36883636 A-TCTAACATTCCTGTGCTTACAGCGAAGC-AGATCGAAGATTTCAG
1 ACT-TGGCATCCCTGTGTTTATAGGGAA-CAAG-TTGAAGATAGCAG
*
36883681 -CATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGCAG
1 ACTTGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGCAG
* * * * *
36883724 ATTTGGCATCCCTGTGTTTATAGGAAACAAATCGAAGATAGCAT
1 ACTTGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGCAG
* * * * * **
36883768 A-TCTGACATTCCTGTGCTTACAGCGAAGC-AGATTGAAGATTTCAG
1 ACT-TGGCATCCCTGTGTTTATAGGGAA-CAAG-TTGAAGATAGCAG
* * *
36883813 -CATGGTATCCTTGTGTTTATAGGGAACAAGTTGAAGATAGCAG
1 ACTTGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGCAG
* * * * *
36883856 ATTTGGCATCCTTGTGCTTACAAGGAACAA
1 ACTTGGCATCCCTGTGTTTATAGGGAACAA
36883886 ATCGAAGACA
Statistics
Matches: 368, Mismatches: 82, Indels: 38
0.75 0.17 0.08
Matches are distributed among these distances:
43 76 0.21
44 258 0.70
45 34 0.09
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27
Consensus pattern (44 bp):
ACTTGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGCAG
Found at i:36883569 original size:132 final size:132
Alignment explanation
Indices: 36883406--36883893 Score: 852
Period size: 132 Copynumber: 3.7 Consensus size: 132
36883396 GGAACAAGTT
*
36883406 GAAGATTTCAGCATGGCATCCCTGTGTTTATAGAGAACAAGTTGAAGATAGCAGACTTGGCATCC
1 GAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGCAGACTTGGCATCC
*
36883471 CTGTGTTTATAGGGAACAAATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGCGAAGCAGA
66 CTGTGTTTATAAGGAACAAATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGCGAAGCAGA
36883536 TC
131 TC
36883538 GAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGCAGACTTGGCATCC
1 GAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGCAGACTTGGCATCC
*
36883603 CTGTGTTTATAAGGAACAAATCGAAGATAGCAGATCTAACATTCCTGTGCTTACAGCGAAGCAGA
66 CTGTGTTTATAAGGAACAAATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGCGAAGCAGA
36883668 TC
131 TC
*
36883670 GAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGCAGATTTGGCATCC
1 GAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGCAGACTTGGCATCC
*
36883735 CTGTGTTTAT-AGGAAACAAATCGAAGATAGCATATCTGACATTCCTGTGCTTACAGCGAAGCAG
66 CTGTGTTTATAAGG-AACAAATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGCGAAGCAG
*
36883799 ATT
130 ATC
* * *
36883802 GAAGATTTCAGCATGGTATCCTTGTGTTTATAGGGAACAAGTTGAAGATAGCAGATTTGGCATCC
1 GAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGCAGACTTGGCATCC
* * *
36883867 TTGTGCTTACAAGGAACAAATCGAAGA
66 CTGTGTTTATAAGGAACAAATCGAAGA
36883894 CATAACTGAT
Statistics
Matches: 342, Mismatches: 12, Indels: 4
0.96 0.03 0.01
Matches are distributed among these distances:
131 3 0.01
132 336 0.98
133 3 0.01
ACGTcount: A:0.32, C:0.18, G:0.24, T:0.27
Consensus pattern (132 bp):
GAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGCAGACTTGGCATCC
CTGTGTTTATAAGGAACAAATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGCGAAGCAGA
TC
Found at i:36883576 original size:88 final size:87
Alignment explanation
Indices: 36883288--36883893 Score: 480
Period size: 88 Copynumber: 6.9 Consensus size: 87
36883278 AAACAAGATT
* * * * *
36883288 TGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGCAGATCTGACACTCCTATGCTTGCAAC
1 TGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGCAGATCTGGCATTCCTGTGCTTACAGC
*** * *
36883353 GAAGCAGATCGAAGATTTAAACT
66 GAA-CAGATCGAAGATAGCAGCA
* * ** * * *
36883376 TGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATTTCAG--CATGGCATCCCTGTGTTTATAG
1 TGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGCAGATC-TGGCATTCCTGTGCTTACAG
* * *
36883439 AGAACA-AGTTGAAGATAGCAGACT
65 CGAACAGA-TCGAAGATAGCAG-CA
*
36883463 TGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGC
1 TGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGCAGATCTGGCATTCCTGTGCTTACAGC
**
36883528 GAAGCAGATCGAAGATTTCAGCA
66 GAA-CAGATCGAAGATAGCAGCA
* * * * *
36883551 TGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGCAGA-CTTGGCATCCCTGTGTTTATAA
1 TGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGCAGATC-TGGCATTCCTGTGCTTA-CA
*
36883615 G-GAACAAATCGAAGATAGCAG-A
64 GCGAACAGATCGAAGATAGCAGCA
** * * * * * ** * *
36883637 TCTAACATTCCTGTGCTTACAGCGAAGCAGATCGAAGATTTCAG--CATGGCATCCCTGTGTTTA
1 --TGGCATCCCTGTGTTTATAGGGAA-CAAATCGAAGATAGCAGATC-TGGCATTCCTGTGCTTA
* * *
36883700 TAGGGAACA-AGTTGAAGATAGCAG-A
62 CAGCGAACAGA-TCGAAGATAGCAGCA
* * *
36883725 TTTGGCATCCCTGTGTTTATAGGAAACAAATCGAAGATAGCATATCTGACATTCCTGTGCTTACA
1 --TGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGCAGATCTGGCATTCCTGTGCTTACA
* **
36883790 GCGAAGCAGATTGAAGATTTCAGCA
64 GCGAA-CAGATCGAAGATAGCAGCA
* * * * *
36883815 TGGTATCCTTGTGTTTATAGGGAACAAGTTGAAGATAGCAGATTTGGCA-TCCTTGTGCTTACAA
1 TGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGCAGATCTGGCATTCC-TGTGCTTAC-A
*
36883879 G-GAACAAATCGAAGA
64 GCGAACAGATCGAAGA
36883894 CATAACTGAT
Statistics
Matches: 414, Mismatches: 83, Indels: 43
0.77 0.15 0.08
Matches are distributed among these distances:
85 1 0.00
86 12 0.03
87 97 0.23
88 258 0.62
89 43 0.10
90 3 0.01
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27
Consensus pattern (87 bp):
TGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGCAGATCTGGCATTCCTGTGCTTACAGC
GAACAGATCGAAGATAGCAGCA
Found at i:36883578 original size:175 final size:176
Alignment explanation
Indices: 36883287--36883636 Score: 569
Period size: 175 Copynumber: 2.0 Consensus size: 176
36883277 GAAACAAGAT
*
36883287 TTGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGCAGATCTGACACTCCTATGCTTGCAA
1 TTGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGCAGATCTGACACTCCTATGCTTACAA
* **
36883352 CGAAGCAGATCGAAGATTTAAACTTGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATTTCAG
66 CGAAGCAGATCGAAGATTTAAACATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGCAG
* *
36883417 -CATGGCATCCCTGTGTTTAT-AGAGAACAAGTTGAAGATAGCAGAC
131 ACATGGCATCCCTGTGTTTATAAG-GAACAAATCGAAGATAGCAGAC
* * *
36883462 TTGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAG
1 TTGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGCAGATCTGACACTCCTATGCTTACAA
* *
36883527 CGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGCAG
66 CGAAGCAGATCGAAGATTTAAACATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGCAG
*
36883592 ACTTGGCATCCCTGTGTTTATAAGGAACAAATCGAAGATAGCAGA
131 ACATGGCATCCCTGTGTTTATAAGGAACAAATCGAAGATAGCAGA
36883637 TCTAACATTC
Statistics
Matches: 161, Mismatches: 12, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
175 121 0.75
176 38 0.24
177 2 0.01
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.26
Consensus pattern (176 bp):
TTGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGCAGATCTGACACTCCTATGCTTACAA
CGAAGCAGATCGAAGATTTAAACATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGCAG
ACATGGCATCCCTGTGTTTATAAGGAACAAATCGAAGATAGCAGAC
Found at i:36883893 original size:44 final size:44
Alignment explanation
Indices: 36883283--36883893 Score: 415
Period size: 44 Copynumber: 13.9 Consensus size: 44
36883273 CAAAGAAACA
*
36883283 AGATTTGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGC
1 AGATTTGGCATCCCTGTGTTTATAAGGAACAAATCGAAGATAGC
* * * * ** * * **
36883327 AGATCTGACA-CTCCTATGCTTGCAACGAAGCAGATCGAAGAT-TT
1 AGATTTGGCATC-CCTGTGTTTATAAGGAA-CAAATCGAAGATAGC
* * * * * **
36883371 AAACTTGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATTTC
1 AGATTTGGCATCCCTGTGTTTATAAGGAACAAATCGAAGATAGC
* *
36883415 AGCA--TGGCATCCCTGTGTTTAT-AGAGAACAAGTTGAAGATAGC
1 AG-ATTTGGCATCCCTGTGTTTATAAG-GAACAAATCGAAGATAGC
* *
36883458 AGACTTGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGC
1 AGATTTGGCATCCCTGTGTTTATAAGGAACAAATCGAAGATAGC
* * * * * * **
36883502 AGATCTGACATTCCTGTGCTTA-CAGCGAAGCAGATCGAAGATTTC
1 AGATTTGGCATCCCTGTGTTTATAAG-GAA-CAAATCGAAGATAGC
* * *
36883547 AGCA--TGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGC
1 AG-ATTTGGCATCCCTGTGTTTATAAGGAACAAATCGAAGATAGC
*
36883590 AGACTTGGCATCCCTGTGTTTATAAGGAACAAATCGAAGATAGC
1 AGATTTGGCATCCCTGTGTTTATAAGGAACAAATCGAAGATAGC
* ** * * * * **
36883634 AGATCTAACATTCCTGTGCTTA-CAGCGAAGCAGATCGAAGATTTC
1 AGATTTGGCATCCCTGTGTTTATAAG-GAA-CAAATCGAAGATAGC
* * *
36883679 AGCA--TGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGC
1 AG-ATTTGGCATCCCTGTGTTTATAAGGAACAAATCGAAGATAGC
36883722 AGATTTGGCATCCCTGTGTTTAT-AGGAAACAAATCGAAGATAGC
1 AGATTTGGCATCCCTGTGTTTATAAGG-AACAAATCGAAGATAGC
* * * * * * * * **
36883766 ATATCTGACATTCCTGTGCTTA-CAGCGAAGCAGATTGAAGATTTC
1 AGATTTGGCATCCCTGTGTTTATAAG-GAA-CAAATCGAAGATAGC
* * * * *
36883811 AGCA--TGGTATCCTTGTGTTTATAGGGAACAAGTTGAAGATAGC
1 AG-ATTTGGCATCCCTGTGTTTATAAGGAACAAATCGAAGATAGC
* * *
36883854 AGATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGA
1 AGATTTGGCATCCCTGTGTTTATAAGGAACAAATCGAAGA
36883894 CATAACTGAT
Statistics
Matches: 432, Mismatches: 106, Indels: 58
0.72 0.18 0.10
Matches are distributed among these distances:
42 5 0.01
43 88 0.20
44 278 0.64
45 58 0.13
46 3 0.01
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27
Consensus pattern (44 bp):
AGATTTGGCATCCCTGTGTTTATAAGGAACAAATCGAAGATAGC
Found at i:36884488 original size:206 final size:206
Alignment explanation
Indices: 36883855--36884801 Score: 1495
Period size: 206 Copynumber: 4.6 Consensus size: 206
36883845 GAAGATAGCA
* *
36883855 GATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAACTGATTTGGATTTCACG-GTT
1 GATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGATTTCACGTGCT
* *
36883919 TACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAAAGAACAAATCGAAGTTTGG
66 TACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGG
* *
36883984 CGTCTCCATATTCGACGGAGAGCAGACACATAGCAGATCTAGCCTTCATATGTTTATACTGAAGC
131 CGTCTCCATATTCGACGGAGAGCAGACACATAGCAGATCTAACCTTCAGATGTTTATACTGAAGC
*
36884049 AGATCCAAGGT
196 AGATCCAAGAT
* * *
36884060 GATTTGGCATCCTTGTACTTACAAGGAACAAATCGAAGACATAACTGATTTGGCTTTCACGTGCT
1 GATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGATTTCACGTGCT
*
36884125 TACAATGAAGCAAATCTAAGATGATTT-GCATC-CTTGTATTGTCAGAGAACAAATCGAAGTTTG
66 TACGATGAAGCAAATCTAAGATGATTTGGCATCTC-TGTATTGTCAGAGAACAAATCGAAGTTTG
* ** *
36884188 GCGTCTCCACATTCGACGGAGAGCAGACACATAGCAGATCTGGCCTTCATATGTTTATACTGAAG
130 GCGTCTCCATATTCGACGGAGAGCAGACACATAGCAGATCTAACCTTCAGATGTTTATACTGAAG
*
36884253 CAGATCCAAGGT
195 CAGATCCAAGAT
36884265 GATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGATTTCACGTGCT
1 GATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGATTTCACGTGCT
* *
36884330 TACGATGAAGCAAATCTGAGATGATTTGGCATCTCTGTATTGTCAGAGAAAAAATCGAAGTTTGG
66 TACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGG
* * **
36884395 TGTCTCCATATTTGACGGAGAGTGGACACATAGCAGATCTAACCTTCAGATGTTTATACTGAAGC
131 CGTCTCCATATTCGACGGAGAGCAGACACATAGCAGATCTAACCTTCAGATGTTTATACTGAAGC
36884460 AGATCCAAGAT
196 AGATCCAAGAT
* * * *
36884471 GATTGGGCATTCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACTTGCT
1 GATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGATTTCACGTGCT
*
36884536 TACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATTGAAGTTTGG
66 TACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGG
* * * *
36884601 CGTCTCCATATTCGACTGAGGGCAGACACATAGCAGATCTAACCTTCAGATGATTAGACTGAAGC
131 CGTCTCCATATTCGACGGAGAGCAGACACATAGCAGATCTAACCTTCAGATGTTTATACTGAAGC
36884666 AGATCCAAGAT
196 AGATCCAAGAT
* * * * * * * *
36884677 GGTTTGGTATCCTTGTGCTTACAAGGAGCAAATCAAAGACATAGTTAATTTGGTTTTCGCGTGCT
1 GATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGATTTCACGTGCT
* *
36884742 TACGATGAAGCAAATCTAAGATGATTTTGCATCTCTGTATTGTCAGAAAACAAATCGAAG
66 TACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAG
36884802 ATAACAGATT
Statistics
Matches: 686, Mismatches: 52, Indels: 7
0.92 0.07 0.01
Matches are distributed among these distances:
204 1 0.00
205 254 0.37
206 430 0.63
207 1 0.00
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.29
Consensus pattern (206 bp):
GATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGATTTCACGTGCT
TACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGG
CGTCTCCATATTCGACGGAGAGCAGACACATAGCAGATCTAACCTTCAGATGTTTATACTGAAGC
AGATCCAAGAT
Found at i:36885209 original size:19 final size:19
Alignment explanation
Indices: 36885185--36885252 Score: 95
Period size: 19 Copynumber: 3.7 Consensus size: 19
36885175 AATCTTTAGG
36885185 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
* *
36885204 GATATGGAATCCTAGATAT
1 GATATGCAATCTTAGATAT
36885223 GATA--CAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
36885240 GATATGCAGTCTT
1 GATATGCAATCTT
36885253 GAAAATATGA
Statistics
Matches: 42, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
17 15 0.36
19 27 0.64
ACGTcount: A:0.35, C:0.12, G:0.18, T:0.35
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:36885795 original size:25 final size:25
Alignment explanation
Indices: 36885767--36885815 Score: 73
Period size: 26 Copynumber: 2.0 Consensus size: 25
36885757 GTGCATAGTT
36885767 TTATTT-TTTTATATGCTATGTTTAA
1 TTATTTCTTTTATATGCTAT-TTTAA
*
36885792 TTATTTCTTTTATGTGCTATTTTA
1 TTATTTCTTTTATATGCTATTTTA
36885816 TGATATATAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 10 0.45
26 12 0.55
ACGTcount: A:0.20, C:0.06, G:0.08, T:0.65
Consensus pattern (25 bp):
TTATTTCTTTTATATGCTATTTTAA
Found at i:36889306 original size:13 final size:13
Alignment explanation
Indices: 36889270--36889330 Score: 59
Period size: 13 Copynumber: 4.7 Consensus size: 13
36889260 TCTTCATTGC
36889270 TTTTGAAAAGTGT
1 TTTTGAAAAGTGT
* *
36889283 TGTGGAAAAGTGT
1 TTTTGAAAAGTGT
* **
36889296 TTTTGAGAAGTAC
1 TTTTGAAAAGTGT
*
36889309 TTTTGAGAAGTGT
1 TTTTGAAAAGTGT
*
36889322 TTTGGAAAA
1 TTTTGAAAA
36889331 ATTTAAGTGT
Statistics
Matches: 37, Mismatches: 11, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
13 37 1.00
ACGTcount: A:0.31, C:0.02, G:0.28, T:0.39
Consensus pattern (13 bp):
TTTTGAAAAGTGT
Found at i:36892877 original size:18 final size:18
Alignment explanation
Indices: 36892850--36892906 Score: 96
Period size: 18 Copynumber: 3.2 Consensus size: 18
36892840 TACGACCGTT
36892850 TACGGTACTATTCACGTA
1 TACGGTACTATTCACGTA
*
36892868 TACGGCACTATTCACGTA
1 TACGGTACTATTCACGTA
*
36892886 TACGGTACTGTTCACGTA
1 TACGGTACTATTCACGTA
36892904 TAC
1 TAC
36892907 AATAGTTGGG
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 36 1.00
ACGTcount: A:0.26, C:0.25, G:0.18, T:0.32
Consensus pattern (18 bp):
TACGGTACTATTCACGTA
Found at i:36904118 original size:39 final size:39
Alignment explanation
Indices: 36904060--36904147 Score: 140
Period size: 39 Copynumber: 2.3 Consensus size: 39
36904050 TTTGAAATGG
*
36904060 CCGGACTTAAGATCCGCAGGCTTCGTGCTGGTACTATAT
1 CCGGACTTAAGATCCGCAGGCTTCGTACTGGTACTATAT
* *
36904099 CCGGACTTAAGGTCTGCAGGCTTCGTACTGGTACTATAT
1 CCGGACTTAAGATCCGCAGGCTTCGTACTGGTACTATAT
*
36904138 CCGGGCTTAA
1 CCGGACTTAA
36904148 AGTCCCGTAG
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 45 1.00
ACGTcount: A:0.20, C:0.25, G:0.26, T:0.28
Consensus pattern (39 bp):
CCGGACTTAAGATCCGCAGGCTTCGTACTGGTACTATAT
Found at i:36914614 original size:12 final size:12
Alignment explanation
Indices: 36914597--36914625 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
36914587 ATTTTTCATT
36914597 AAAACGCCGCTA
1 AAAACGCCGCTA
36914609 AAAACGCCGCTA
1 AAAACGCCGCTA
36914621 AAAAC
1 AAAAC
36914626 CTATTTTACT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.48, C:0.31, G:0.14, T:0.07
Consensus pattern (12 bp):
AAAACGCCGCTA
Found at i:36921125 original size:18 final size:19
Alignment explanation
Indices: 36921099--36921136 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
36921089 AGCAATGTGT
36921099 ATACCCCACAAC-AAATGG
1 ATACCCCACAACAAAATGG
*
36921117 ATACTCCACAACAAAATGG
1 ATACCCCACAACAAAATGG
36921136 A
1 A
36921137 GTGACTAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 11 0.61
19 7 0.39
ACGTcount: A:0.47, C:0.29, G:0.11, T:0.13
Consensus pattern (19 bp):
ATACCCCACAACAAAATGG
Found at i:36924864 original size:19 final size:19
Alignment explanation
Indices: 36924818--36924865 Score: 55
Period size: 19 Copynumber: 2.6 Consensus size: 19
36924808 GTATATATTT
36924818 TAAA-TTTATTTAGGTAGA
1 TAAATTTTATTTAGGTAGA
*
36924836 TAAATCTTATTT-GGATAGA
1 TAAATTTTATTTAGG-TAGA
*
36924855 TAAGTTTTATT
1 TAAATTTTATT
36924866 CATATTCTAG
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
18 6 0.24
19 19 0.76
ACGTcount: A:0.35, C:0.02, G:0.15, T:0.48
Consensus pattern (19 bp):
TAAATTTTATTTAGGTAGA
Found at i:36924927 original size:43 final size:43
Alignment explanation
Indices: 36924879--36924971 Score: 143
Period size: 43 Copynumber: 2.2 Consensus size: 43
36924869 ATTCTAGAAA
36924879 TATTTT-TATTTTATCTTTTAGTAGTTTACTAAAATAAGGGAAC
1 TATTTTCT-TTTTATCTTTTAGTAGTTTACTAAAATAAGGGAAC
* * *
36924922 TATTTTCTTTTTATGTTTTAGTAGTTTATTAGAATAAGGGAAC
1 TATTTTCTTTTTATCTTTTAGTAGTTTACTAAAATAAGGGAAC
36924965 TATTTTC
1 TATTTTC
36924972 CCAATTAGGA
Statistics
Matches: 46, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
43 45 0.98
44 1 0.02
ACGTcount: A:0.29, C:0.06, G:0.13, T:0.52
Consensus pattern (43 bp):
TATTTTCTTTTTATCTTTTAGTAGTTTACTAAAATAAGGGAAC
Found at i:36929603 original size:19 final size:19
Alignment explanation
Indices: 36929557--36929604 Score: 55
Period size: 19 Copynumber: 2.6 Consensus size: 19
36929547 GTATATATTT
36929557 TAAA-TTTATTTAGGTAGA
1 TAAATTTTATTTAGGTAGA
*
36929575 TAAATCTTATTT-GGATAGA
1 TAAATTTTATTTAGG-TAGA
*
36929594 TAAGTTTTATT
1 TAAATTTTATT
36929605 CATATTCTAG
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
18 6 0.24
19 19 0.76
ACGTcount: A:0.35, C:0.02, G:0.15, T:0.48
Consensus pattern (19 bp):
TAAATTTTATTTAGGTAGA
Found at i:36929666 original size:43 final size:43
Alignment explanation
Indices: 36929618--36929710 Score: 125
Period size: 43 Copynumber: 2.2 Consensus size: 43
36929608 ATTCTAGAAA
*
36929618 TATTTT-TATTTTATCTTTTATTAGTTTACTAAAATAAGGGAAC
1 TATTTTCT-TTTTATCTTTTAGTAGTTTACTAAAATAAGGGAAC
* * **
36929661 TATTTTCTTTTTATGTTTTAGTAGTTTATTAGGATAAGGGAAC
1 TATTTTCTTTTTATCTTTTAGTAGTTTACTAAAATAAGGGAAC
36929704 TATTTTC
1 TATTTTC
36929711 CCAATTAGGA
Statistics
Matches: 44, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
43 43 0.98
44 1 0.02
ACGTcount: A:0.28, C:0.06, G:0.13, T:0.53
Consensus pattern (43 bp):
TATTTTCTTTTTATCTTTTAGTAGTTTACTAAAATAAGGGAAC
Found at i:36934224 original size:21 final size:21
Alignment explanation
Indices: 36934188--36934251 Score: 74
Period size: 21 Copynumber: 3.0 Consensus size: 21
36934178 TTTGGTTGGA
* *
36934188 TCAACTCTTTTAAGCTTCTGT
1 TCAACTCTTATGAGCTTCTGT
* * *
36934209 TTAATTCTTATGAGCTTTTGT
1 TCAACTCTTATGAGCTTCTGT
*
36934230 TCAACTCTTTTGAGCTTCTGT
1 TCAACTCTTATGAGCTTCTGT
36934251 T
1 T
36934252 GACGATGTAC
Statistics
Matches: 34, Mismatches: 9, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
21 34 1.00
ACGTcount: A:0.17, C:0.19, G:0.12, T:0.52
Consensus pattern (21 bp):
TCAACTCTTATGAGCTTCTGT
Found at i:36941145 original size:3 final size:3
Alignment explanation
Indices: 36941125--36941207 Score: 57
Period size: 3 Copynumber: 28.3 Consensus size: 3
36941115 GCATCTCTAT
* * * *
36941125 TTC TTC TCC TCC TT- TTC TTC TTC TTC TTT TTC -TC TTT TTC TTC -TC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
* * *
36941170 CTA TTC TTC TTC TTC TTC TTT TTAGC -TC TTC TTC TTC T
1 TTC TTC TTC TTC TTC TTC TTC TT--C TTC TTC TTC TTC T
36941208 ACTACCTATA
Statistics
Matches: 63, Mismatches: 11, Indels: 12
0.73 0.13 0.14
Matches are distributed among these distances:
2 7 0.11
3 55 0.87
4 1 0.02
ACGTcount: A:0.02, C:0.31, G:0.01, T:0.65
Consensus pattern (3 bp):
TTC
Found at i:36941147 original size:17 final size:17
Alignment explanation
Indices: 36941125--36941191 Score: 73
Period size: 17 Copynumber: 3.9 Consensus size: 17
36941115 GCATCTCTAT
*
36941125 TTCTTCTCCTCCTTTTC
1 TTCTTCTTCTCCTTTTC
*
36941142 TTCTTCTTCT-TTTTCTC
1 TTCTTCTTCTCCTTT-TC
* *
36941159 TTTTTCTTCTCCTATTC
1 TTCTTCTTCTCCTTTTC
*
36941176 TTCTTCTTCTTCTTTT
1 TTCTTCTTCTCCTTTT
36941192 TAGCTCTTCT
Statistics
Matches: 40, Mismatches: 8, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
16 3 0.08
17 35 0.88
18 2 0.05
ACGTcount: A:0.01, C:0.31, G:0.00, T:0.67
Consensus pattern (17 bp):
TTCTTCTTCTCCTTTTC
Found at i:36941153 original size:14 final size:14
Alignment explanation
Indices: 36941124--36941189 Score: 53
Period size: 14 Copynumber: 4.6 Consensus size: 14
36941114 GGCATCTCTA
* *
36941124 TTTCTTCTCCTCCT
1 TTTCTTCTTCTTCT
36941138 TTTCTTCTTCTTCT
1 TTTCTTCTTCTTCT
*
36941152 TTT-TCTCTTTTTCT
1 TTTCT-TCTTCTTCT
* * *
36941166 TCTCCTATTCTTCT
1 TTTCTTCTTCTTCT
36941180 TCTTCTTCTT
1 T-TTCTTCTT
36941190 TTTAGCTCTT
Statistics
Matches: 39, Mismatches: 10, Indels: 5
0.72 0.19 0.09
Matches are distributed among these distances:
13 1 0.03
14 33 0.85
15 5 0.13
ACGTcount: A:0.02, C:0.32, G:0.00, T:0.67
Consensus pattern (14 bp):
TTTCTTCTTCTTCT
Found at i:36941168 original size:37 final size:37
Alignment explanation
Indices: 36941118--36941207 Score: 119
Period size: 37 Copynumber: 2.4 Consensus size: 37
36941108 AAGGTTGGCA
* *
36941118 TCTCTATTTCTTCTCCTCCTT-TTCTTCTTCTTCTTTT
1 TCTCTTTTTCTTCTCCT-ATTCTTCTTCTTCTTCTTTT
36941155 TCTCTTTTTCTTCTCCTATTCTTCTTCTTCTTCTTTT
1 TCTCTTTTTCTTCTCCTATTCTTCTTCTTCTTCTTTT
*
36941192 TAGCTCTTCTTCTTCT
1 T--CTCTTTTTCTTCT
36941208 ACTACCTATA
Statistics
Matches: 47, Mismatches: 3, Indels: 4
0.87 0.06 0.07
Matches are distributed among these distances:
36 2 0.04
37 33 0.70
39 12 0.26
ACGTcount: A:0.03, C:0.31, G:0.01, T:0.64
Consensus pattern (37 bp):
TCTCTTTTTCTTCTCCTATTCTTCTTCTTCTTCTTTT
Found at i:36941204 original size:28 final size:28
Alignment explanation
Indices: 36941140--36941207 Score: 75
Period size: 28 Copynumber: 2.4 Consensus size: 28
36941130 CTCCTCCTTT
* **
36941140 TCTTCTTCTTCTTTTTCTCTTTTTCTTC
1 TCTTCTTCTTCTTCTTCTCTTTTTCAGC
* *
36941168 TCCTATTCTTCTTCTTCTTCTTTTT-AGC
1 TCTTCTTCTTCTTCTTC-TCTTTTTCAGC
36941196 TCTTCTTCTTCT
1 TCTTCTTCTTCT
36941208 ACTACCTATA
Statistics
Matches: 32, Mismatches: 7, Indels: 2
0.78 0.17 0.05
Matches are distributed among these distances:
28 25 0.78
29 7 0.22
ACGTcount: A:0.03, C:0.29, G:0.01, T:0.66
Consensus pattern (28 bp):
TCTTCTTCTTCTTCTTCTCTTTTTCAGC
Found at i:36942549 original size:27 final size:27
Alignment explanation
Indices: 36942482--36942542 Score: 104
Period size: 27 Copynumber: 2.3 Consensus size: 27
36942472 TCATCAAATA
* *
36942482 AGTTTTTTGTAGTGGATTGTAGATGAG
1 AGTTTTTTGTAGTGGACTATAGATGAG
36942509 AGTTTTTTGTAGTGGACTATAGATGAG
1 AGTTTTTTGTAGTGGACTATAGATGAG
36942536 AGTTTTT
1 AGTTTTT
36942543 CATAGTGTAC
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.23, C:0.02, G:0.30, T:0.46
Consensus pattern (27 bp):
AGTTTTTTGTAGTGGACTATAGATGAG
Found at i:36945825 original size:60 final size:60
Alignment explanation
Indices: 36945700--36945834 Score: 139
Period size: 60 Copynumber: 2.2 Consensus size: 60
36945690 GTGCTAACTG
* * * *
36945700 GGCCTTAGCCCATATCAATATTAATCTGAGCCATAGCCCCTTACAGTATGAGAGTATACTG
1 GGCC-TAGCCCATATCAATATCAATCTGAGCCATAGCCCATTACAGTACGAGAGTATACTA
* * * * *
36945761 GGCCTAGCCCATGTCAGTATCAATCTGGGCCGTAGCCCTATTACAAGT-CGAGA-TATATTA
1 GGCCTAGCCCATATCAATATCAATCTGAGCCATAGCCC-ATTAC-AGTACGAGAGTATACTA
*
36945821 GGCCTTGCCCATAT
1 GGCCTAGCCCATAT
36945835 TAACATAGTT
Statistics
Matches: 61, Mismatches: 11, Indels: 5
0.79 0.14 0.06
Matches are distributed among these distances:
60 46 0.75
61 12 0.20
62 3 0.05
ACGTcount: A:0.27, C:0.26, G:0.20, T:0.27
Consensus pattern (60 bp):
GGCCTAGCCCATATCAATATCAATCTGAGCCATAGCCCATTACAGTACGAGAGTATACTA
Found at i:36950122 original size:60 final size:60
Alignment explanation
Indices: 36949993--36950131 Score: 147
Period size: 60 Copynumber: 2.3 Consensus size: 60
36949983 ATCAGTGTTA
* * * *
36949993 ACTAAGCCTTAGCCCATATCAATATTAATCTGGGCCATAGCCCCTTACAGTATGAGAGTAT
1 ACTAGGCC-TAGCCCATATCAATATCAATCTGGGCCATAGCCCATTACAGTACGAGAGTAT
* * * *
36950054 ACTGGGCCTAGCCCATGTCAGTATCAATCTGGGCCGTAGCCCTATTACAAGT-CGAGA-TAT
1 ACTAGGCCTAGCCCATATCAATATCAATCTGGGCCATAGCCC-ATTAC-AGTACGAGAGTAT
* *
36950114 ATTAGGCCTTGCCCATAT
1 ACTAGGCCTAGCCCATAT
36950132 TAACATAGTT
Statistics
Matches: 64, Mismatches: 12, Indels: 5
0.79 0.15 0.06
Matches are distributed among these distances:
60 47 0.73
61 14 0.22
62 3 0.05
ACGTcount: A:0.27, C:0.26, G:0.19, T:0.27
Consensus pattern (60 bp):
ACTAGGCCTAGCCCATATCAATATCAATCTGGGCCATAGCCCATTACAGTACGAGAGTAT
Found at i:36953372 original size:12 final size:12
Alignment explanation
Indices: 36953352--36953401 Score: 50
Period size: 11 Copynumber: 4.3 Consensus size: 12
36953342 ACCTTTTTTT
*
36953352 TTTTCATTTCTA
1 TTTTAATTTCTA
*
36953364 TTTTAATTTCCA
1 TTTTAATTTCTA
*
36953376 -TTTCATTTC-A
1 TTTTAATTTCTA
*
36953386 TTTTAATTTATA
1 TTTTAATTTCTA
36953398 TTTT
1 TTTT
36953402 CCATTTTAAT
Statistics
Matches: 31, Mismatches: 5, Indels: 4
0.77 0.12 0.10
Matches are distributed among these distances:
10 1 0.03
11 15 0.48
12 15 0.48
ACGTcount: A:0.22, C:0.12, G:0.00, T:0.66
Consensus pattern (12 bp):
TTTTAATTTCTA
Found at i:36953385 original size:28 final size:29
Alignment explanation
Indices: 36953353--36953459 Score: 82
Period size: 28 Copynumber: 3.7 Consensus size: 29
36953343 CCTTTTTTTT
36953353 TTTCATTTCT-ATTT-TAATTTCCATTTCA
1 TTTCATTT-TAATTTATAATTTCCATTTCA
* *
36953381 TTTCATTTTAATTTATATTTTCCATTTTAA
1 TTTCATTTTAATTTATAATTTCCA-TTTCA
* *
36953411 TTT-A-TTT-ATTTATCATTT-CAGTTTTTA
1 TTTCATTTTAATTTATAATTTCCA--TTTCA
*
36953438 TTTTCATTTAAATTTATAATTT
1 -TTTCATTTTAATTTATAATTT
36953460 ATTTTCATTT
Statistics
Matches: 64, Mismatches: 7, Indels: 13
0.76 0.08 0.15
Matches are distributed among these distances:
26 2 0.03
27 15 0.23
28 18 0.28
29 10 0.16
30 9 0.14
31 10 0.16
ACGTcount: A:0.25, C:0.10, G:0.01, T:0.64
Consensus pattern (29 bp):
TTTCATTTTAATTTATAATTTCCATTTCA
Found at i:36953408 original size:19 final size:18
Alignment explanation
Indices: 36953381--36953470 Score: 83
Period size: 18 Copynumber: 4.8 Consensus size: 18
36953371 TTCCATTTCA
36953381 TTTCATTTTAATTTATAT
1 TTTCATTTTAATTTATAT
36953399 TTTCCATTTTAATTTATTTAT
1 TTT-CATTTTAATTTA--TAT
* * *
36953420 TTATCATTTCAGTTTTTAT
1 TT-TCATTTTAATTTATAT
* *
36953439 TTTCATTTAAATTTATAA
1 TTTCATTTTAATTTATAT
*
36953457 TTT-ATTTTCATTTA
1 TTTCATTTTAATTTA
36953471 AACTTTTATT
Statistics
Matches: 59, Mismatches: 9, Indels: 9
0.77 0.12 0.12
Matches are distributed among these distances:
17 9 0.15
18 18 0.31
19 17 0.29
21 14 0.24
22 1 0.02
ACGTcount: A:0.27, C:0.08, G:0.01, T:0.64
Consensus pattern (18 bp):
TTTCATTTTAATTTATAT
Found at i:36953504 original size:5 final size:5
Alignment explanation
Indices: 36953494--36953571 Score: 66
Period size: 5 Copynumber: 14.0 Consensus size: 5
36953484 TTTCATAATA
* *
36953494 TCATT TCATT TCATT TCATAT TCATT ACAAATT ACATT TCATT TCATAT
1 TCATT TCATT TCATT TCAT-T TCATT TC--ATT TCATT TCATT TCAT-T
36953543 TCATATT TCATT TAACATT TCATT TCATT
1 TC--ATT TCATT T--CATT TCATT TCATT
36953572 AAATTTTTTT
Statistics
Matches: 63, Mismatches: 2, Indels: 16
0.78 0.02 0.20
Matches are distributed among these distances:
5 40 0.63
6 8 0.13
7 13 0.21
8 2 0.03
ACGTcount: A:0.29, C:0.18, G:0.00, T:0.53
Consensus pattern (5 bp):
TCATT
Found at i:36953554 original size:23 final size:24
Alignment explanation
Indices: 36953482--36953570 Score: 76
Period size: 28 Copynumber: 3.6 Consensus size: 24
36953472 ACTTTTATTC
* *
36953482 CATTTCATAAT-ATCATTTCATTT
1 CATTTCATATTCATAATTTCATTT
*
36953505 CATTTCATATTCATTACAAATTACATTT
1 CATTTCATATTCA-T---AATTTCATTT
36953533 CATTTCATATTCAT-ATTTCATTT
1 CATTTCATATTCATAATTTCATTT
36953556 AACATTTCAT-TTCAT
1 --CATTTCATATTCAT
36953571 TAAATTTTTT
Statistics
Matches: 55, Mismatches: 4, Indels: 13
0.76 0.06 0.18
Matches are distributed among these distances:
23 18 0.33
24 6 0.11
25 9 0.16
27 1 0.02
28 21 0.38
ACGTcount: A:0.31, C:0.18, G:0.00, T:0.51
Consensus pattern (24 bp):
CATTTCATATTCATAATTTCATTT
Found at i:36953598 original size:16 final size:16
Alignment explanation
Indices: 36953548--36953598 Score: 61
Period size: 16 Copynumber: 3.2 Consensus size: 16
36953538 CATATTCATA
36953548 TTTCATTTAACATTTCA-
1 TTTCATTTAA-ATTT-AT
*
36953565 TTTCA-TTAAATTTTT
1 TTTCATTTAAATTTAT
36953580 TTTCATTTAAATTTAT
1 TTTCATTTAAATTTAT
36953596 TTT
1 TTT
36953599 TTTCCTAACA
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
15 9 0.30
16 16 0.53
17 5 0.17
ACGTcount: A:0.27, C:0.10, G:0.00, T:0.63
Consensus pattern (16 bp):
TTTCATTTAAATTTAT
Found at i:36953754 original size:21 final size:21
Alignment explanation
Indices: 36953712--36953754 Score: 52
Period size: 20 Copynumber: 2.0 Consensus size: 21
36953702 TATCAGGGTC
*
36953712 ATTTAAAATTTTTCATATTTT
1 ATTTAAAATTTTTCATAATTT
*
36953733 ATTT-AAATTTTTCGTCAATTT
1 ATTTAAAATTTTTCAT-AATTT
36953754 A
1 A
36953755 AATATCATTC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 10 0.53
21 9 0.47
ACGTcount: A:0.33, C:0.07, G:0.02, T:0.58
Consensus pattern (21 bp):
ATTTAAAATTTTTCATAATTT
Found at i:36953892 original size:54 final size:56
Alignment explanation
Indices: 36953804--36953910 Score: 157
Period size: 54 Copynumber: 1.9 Consensus size: 56
36953794 TAAAAAAAAT
36953804 TCTCATTTAATTTTTTTTCGTGCTGGTGCCGGCCAATGCCAACCCA-TTCTCAGGCC
1 TCTCATTTAATTTTTTTTC-TGCTGGTGCCGGCCAATGCCAACCCATTTCTCAGGCC
* *
36953860 TCTCATTTCACTTTTTTTT-TG-TGGTGCTGGCCAATGCCAACCCATTTCTCA
1 TCTCATTT-AATTTTTTTTCTGCTGGTGCCGGCCAATGCCAACCCATTTCTCA
36953911 TGCTGGCGCA
Statistics
Matches: 47, Mismatches: 2, Indels: 5
0.87 0.04 0.09
Matches are distributed among these distances:
54 22 0.47
55 8 0.17
56 8 0.17
57 9 0.19
ACGTcount: A:0.16, C:0.29, G:0.16, T:0.39
Consensus pattern (56 bp):
TCTCATTTAATTTTTTTTCTGCTGGTGCCGGCCAATGCCAACCCATTTCTCAGGCC
Found at i:36953970 original size:11 final size:11
Alignment explanation
Indices: 36953950--36954034 Score: 64
Period size: 11 Copynumber: 7.7 Consensus size: 11
36953940 TCACTTTTTT
36953950 TTTC-ATTTCA
1 TTTCAATTTCA
*
36953960 TTTAAATTTCA
1 TTTCAATTTCA
* * *
36953971 ATTCTATTTAA
1 TTTCAATTTCA
*
36953982 TTTGAATTTCTA
1 TTTCAATTTC-A
* *
36953994 TTTCTATTCCA
1 TTTCAATTTCA
*
36954005 TTTCATTTTCA
1 TTTCAATTTCA
*
36954016 TTTCTATTTCA
1 TTTCAATTTCA
*
36954027 TTTAAATT
1 TTTCAATT
36954035 ATATTTTTCT
Statistics
Matches: 54, Mismatches: 19, Indels: 3
0.71 0.25 0.04
Matches are distributed among these distances:
10 3 0.06
11 43 0.80
12 8 0.15
ACGTcount: A:0.26, C:0.14, G:0.01, T:0.59
Consensus pattern (11 bp):
TTTCAATTTCA
Found at i:36953981 original size:17 final size:16
Alignment explanation
Indices: 36953950--36953996 Score: 51
Period size: 16 Copynumber: 2.9 Consensus size: 16
36953940 TCACTTTTTT
*
36953950 TTTCATTTC-ATTTAAA
1 TTTCAATTCTATTT-AA
36953966 TTTCAATTCTATTTAA
1 TTTCAATTCTATTTAA
*
36953982 TTTGAATTTCTATTT
1 TTTCAA-TTCTATTT
36953997 CTATTCCATT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
16 15 0.56
17 12 0.44
ACGTcount: A:0.28, C:0.11, G:0.02, T:0.60
Consensus pattern (16 bp):
TTTCAATTCTATTTAA
Found at i:36953996 original size:28 final size:28
Alignment explanation
Indices: 36953965--36954026 Score: 79
Period size: 28 Copynumber: 2.2 Consensus size: 28
36953955 TTTCATTTAA
*
36953965 ATTTCAATTCTATTTAATTTGAATTTCT
1 ATTTCAATTCCATTTAATTTGAATTTCT
* * **
36953993 ATTTCTATTCCATTTCATTTTCATTTCT
1 ATTTCAATTCCATTTAATTTGAATTTCT
36954021 ATTTCA
1 ATTTCA
36954027 TTTAAATTAT
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.24, C:0.16, G:0.02, T:0.58
Consensus pattern (28 bp):
ATTTCAATTCCATTTAATTTGAATTTCT
Found at i:36954040 original size:22 final size:22
Alignment explanation
Indices: 36953950--36954267 Score: 95
Period size: 23 Copynumber: 13.9 Consensus size: 22
36953940 TCACTTTTTT
36953950 TTTC-ATTTCATTTAAATT-TCA
1 TTTCTATTTCATTTAAATTAT-A
* * * *
36953971 ATTCTATTTAATTTGAATTTCTA
1 TTTCTATTTCATTT-AAATTATA
* * *
36953994 TTTCTATTCCATTT-CATTTTCA
1 TTTCTATTTCATTTAAATTAT-A
36954016 TTTCTATTTCATTTAAATTATA
1 TTTCTATTTCATTTAAATTATA
* * *
36954038 TTTTTCTCCATTTAAATTT-AATTTTT
1 --TTTCT--ATTT-CATTTAAATTATA
**
36954064 TTTCTCATTTCATTTAGTTTATCTA
1 TTTCT-ATTTCATTTAAATTA--TA
* *
36954089 TCTTCCTATTTAAATTT-AATT-TT
1 T-TT-CTATTT-CATTTAAATTATA
* *
36954112 TTTCTCATTTCATTTATATTATT
1 TTTCT-ATTTCATTTAAATTATA
* * *
36954135 TTTTTCATTTAAATTTAAATTATC
1 TTTCT-ATTT-CATTTAAATTATA
* * *
36954159 TATCT-TTCCAGTTTAATTTA-A
1 TTTCTATTTCA-TTTAAATTATA
*
36954180 TTT-T-TTTCACATTTAATTTATA
1 TTTCTATTT--CATTTAAATTATA
36954202 TATT-T-TTTCATTTAAATTTAATA
1 T-TTCTATTTCATTTAAA-TT-ATA
*
36954225 TTTTCCTCATTTCATTTAAATTATC
1 -TTT-CT-ATTTCATTTAAATTATA
36954250 TTTCT-TTTCATTTAAATT
1 TTTCTATTTCATTTAAATT
36954268 TAATTTTTTT
Statistics
Matches: 225, Mismatches: 40, Indels: 64
0.68 0.12 0.19
Matches are distributed among these distances:
20 3 0.01
21 44 0.20
22 52 0.23
23 53 0.24
24 28 0.12
25 5 0.02
26 19 0.08
27 21 0.09
ACGTcount: A:0.26, C:0.13, G:0.01, T:0.60
Consensus pattern (22 bp):
TTTCTATTTCATTTAAATTATA
Found at i:36954187 original size:21 final size:20
Alignment explanation
Indices: 36954025--36954294 Score: 110
Period size: 22 Copynumber: 11.8 Consensus size: 20
36954015 ATTTCTATTT
* *
36954025 CATTTAAATTATATTTTTCTC
1 CATTTAATTTA-ATTTTTTTC
36954046 CATTTAAATTTAATTTTTTTTC
1 CATTT-AATTTAA-TTTTTTTC
* *
36954068 TCATTTCATTTAGTTTATCTATCTTC
1 -CATTTAATTTA-ATT-T-T-T-TTC
36954094 CTATTTAAATTTAATTTTTTTC
1 C-ATTT-AATTTAATTTTTTTC
* *
36954116 TCATTTCATTTATATTATTTTTTT
1 -CATTTAATTTA-A-T-TTTTTTC
36954140 CATTTAAATTTAAATTATCTATCTTTC
1 CATTT-AATTT-AA-T-T-T-T-TTTC
36954167 CAGTTTAATTTAATTTTTTTC
1 CA-TTTAATTTAATTTTTTTC
36954188 ACATTTAATTTATATATTTTTT-
1 -CATTTAATTTA-AT-TTTTTTC
* *
36954210 CATTTAAATTTAATATTTTCC
1 CATTT-AATTTAATTTTTTTC
* *
36954231 TCATTTCATTTAAATTATCTTTCTTTT
1 -CATTTAATTT--A--AT-TTT-TTTC
36954258 CATTTAAATTTAATTTTTTTC
1 CATTT-AATTTAATTTTTTTC
*
36954279 TCATTTCATTTAATTT
1 -CATTTAATTTAATTT
36954295 ATCTATCTTC
Statistics
Matches: 196, Mismatches: 19, Indels: 68
0.69 0.07 0.24
Matches are distributed among these distances:
20 4 0.02
21 47 0.24
22 51 0.26
23 24 0.12
24 18 0.09
25 9 0.05
26 19 0.10
27 21 0.11
28 3 0.02
ACGTcount: A:0.27, C:0.12, G:0.01, T:0.61
Consensus pattern (20 bp):
CATTTAATTTAATTTTTTTC
Found at i:36954222 original size:48 final size:48
Alignment explanation
Indices: 36954147--36954342 Score: 121
Period size: 48 Copynumber: 4.2 Consensus size: 48
36954137 TTTCATTTAA
* * *
36954147 ATTTAAATTATCTATCTTTCCAGTTT-AATTTAA-TT-TTTT--TCA-C
1 ATTTAAATTATATTTCTTTTCA-TTTAAATTTAATTTATTTTCCTCATC
*
36954190 ATTTAATTTATATATT-TTTTCATTTAAATTTAA--TATTTTCCTCATTTC
1 ATTTAAATTATAT-TTCTTTTCATTTAAATTTAATTTATTTTCCTCA--TC
*
36954238 ATTTAAATTATCTTTCTTTTCATTTAAATTTAATTT-TTTT-CTCATTTC
1 ATTTAAATTATATTTCTTTTCATTTAAATTTAATTTATTTTCCTCA--TC
* * * ** * *
36954286 ATTTAATTTATCTATCTTCCCTTTTTAATTTAATTT-TTTT-CTCATTTC
1 ATTTAAATTATATTTCTTTTCATTTAAATTTAATTTATTTTCCTCA--TC
36954334 ATTTAAATT
1 ATTTAAATT
36954343 TAATTTTTTT
Statistics
Matches: 129, Mismatches: 13, Indels: 17
0.81 0.08 0.11
Matches are distributed among these distances:
42 4 0.03
43 27 0.21
44 1 0.01
45 3 0.02
47 2 0.02
48 87 0.67
49 4 0.03
50 1 0.01
ACGTcount: A:0.27, C:0.13, G:0.01, T:0.60
Consensus pattern (48 bp):
ATTTAAATTATATTTCTTTTCATTTAAATTTAATTTATTTTCCTCATC
Found at i:36954361 original size:28 final size:27
Alignment explanation
Indices: 36954207--36954370 Score: 156
Period size: 27 Copynumber: 6.5 Consensus size: 27
36954197 TTATATATTT
* *
36954207 TTTCATTTAAATTTAATATTTTCCTCA
1 TTTCATTTAAATTTAATTTTTTTCTCA
*
36954234 TTTCATTTAAA-TT-A--TCTTTCT--
1 TTTCATTTAAATTTAATTTTTTTCTCA
36954255 TTTCATTTAAATTTAATTTTTTTCTCA
1 TTTCATTTAAATTTAATTTTTTTCTCA
* *
36954282 TTTCATTT-AATTT-ATCTATCTTC-C-
1 TTTCATTTAAATTTAAT-TTTTTTCTCA
*
36954306 CTT--TTT-AATTTAATTTTTTTCTCA
1 TTTCATTTAAATTTAATTTTTTTCTCA
*
36954330 TTTCATTTAAATTTAATTTTTTTTCTCT
1 TTTCATTTAAATTTAA-TTTTTTTCTCA
36954358 TTTCATTTAAATT
1 TTTCATTTAAATT
36954371 ATCTTTCTTT
Statistics
Matches: 113, Mismatches: 10, Indels: 27
0.75 0.07 0.18
Matches are distributed among these distances:
21 11 0.10
22 15 0.13
23 9 0.08
24 4 0.04
25 10 0.09
26 15 0.13
27 26 0.23
28 23 0.20
ACGTcount: A:0.24, C:0.13, G:0.00, T:0.62
Consensus pattern (27 bp):
TTTCATTTAAATTTAATTTTTTTCTCA
Found at i:36954392 original size:27 final size:26
Alignment explanation
Indices: 36954096--36954403 Score: 100
Period size: 27 Copynumber: 12.6 Consensus size: 26
36954086 CTATCTTCCT
*
36954096 ATTTAAATTTAATTTT-TTTCTCA-TTTC
1 ATTTAAA-TT-ATTTTCTTTC-CATTTTA
* *
36954123 ATTTATATTATTTT-TTT-CATTTAA
1 ATTTAAATTATTTTCTTTCCATTTTA
* *
36954147 ATTTAAATTATCTATCTTTCCAGTTTA
1 ATTTAAATTAT-TTTCTTTCCATTTTA
36954174 ATTT--A--ATTTT-TTTCACA-TTTA
1 ATTTAAATTATTTTCTTTC-CATTTTA
* *
36954195 ATTTATA-TA-TTT-TTT-CATTTAA
1 ATTTAAATTATTTTCTTTCCATTTTA
* *
36954217 ATTT-AA-TATTTTC-CT-CA-TTTC
1 ATTTAAATTATTTTCTTTCCATTTTA
* *
36954238 ATTTAAATTATCTTTCTTTTCATTTAA
1 ATTTAAATTAT-TTTCTTTCCATTTTA
* *
36954265 ATTT-AATT-TTTT-TCT-CA-TTTC
1 ATTTAAATTATTTTCTTTCCATTTTA
* * * *
36954286 ATTTAATTTATCTATCTTCCCTTTTTA
1 ATTTAAATTAT-TTTCTTTCCATTTTA
* *
36954313 ATTT-AATT-TTTT-TCT-CA-TTTC
1 ATTTAAATTATTTTCTTTCCATTTTA
* *
36954334 ATTTAAATTTAATTTTTTTTCTC-TTTTC
1 ATTTAAA-TT-ATTTTCTTTC-CATTTTA
36954362 ATTTAAATTATCTTTCTTTCCATTTTA
1 ATTTAAATTAT-TTTCTTTCCATTTTA
* *
36954389 ATTTACATTTTTTTC
1 ATTTAAATTATTTTC
36954404 ATATTAATTT
Statistics
Matches: 212, Mismatches: 36, Indels: 67
0.67 0.11 0.21
Matches are distributed among these distances:
21 36 0.17
22 27 0.13
23 20 0.09
24 24 0.11
25 19 0.09
26 24 0.11
27 50 0.24
28 12 0.06
ACGTcount: A:0.25, C:0.12, G:0.00, T:0.62
Consensus pattern (26 bp):
ATTTAAATTATTTTCTTTCCATTTTA
Found at i:36968166 original size:11 final size:11
Alignment explanation
Indices: 36968139--36968189 Score: 59
Period size: 11 Copynumber: 4.5 Consensus size: 11
36968129 CATATTACGC
*
36968139 ATATATATATTT
1 ATATAT-TATGT
36968151 ATATATTATGT
1 ATATATTATGT
*
36968162 ATATATT-TTT
1 ATATATTATGT
36968172 AATATATTATGT
1 -ATATATTATGT
36968184 ATATAT
1 ATATAT
36968190 ATTATGTGCG
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
10 2 0.06
11 24 0.71
12 8 0.24
ACGTcount: A:0.39, C:0.00, G:0.04, T:0.57
Consensus pattern (11 bp):
ATATATTATGT
Found at i:36968179 original size:22 final size:21
Alignment explanation
Indices: 36968140--36968192 Score: 88
Period size: 22 Copynumber: 2.5 Consensus size: 21
36968130 ATATTACGCA
36968140 TATATATATTTATATATTATG
1 TATATATATTTATATATTATG
*
36968161 TATATATTTTTAATATATTATG
1 TATATATATTT-ATATATTATG
36968183 TATATATATT
1 TATATATATT
36968193 ATGTGCGTAC
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
21 10 0.34
22 19 0.66
ACGTcount: A:0.38, C:0.00, G:0.04, T:0.58
Consensus pattern (21 bp):
TATATATATTTATATATTATG
Found at i:36968189 original size:13 final size:13
Alignment explanation
Indices: 36968139--36968196 Score: 67
Period size: 13 Copynumber: 5.0 Consensus size: 13
36968129 CATATTACGC
36968139 ATATATA-TAT-T
1 ATATATATTATGT
36968150 -TATATATTATGT
1 ATATATATTATGT
36968162 ATATAT-TT-T-T
1 ATATATATTATGT
36968172 A-ATATATTATGT
1 ATATATATTATGT
36968184 ATATATATTATGT
1 ATATATATTATGT
36968197 GCGTACTTTT
Statistics
Matches: 40, Mismatches: 0, Indels: 12
0.77 0.00 0.23
Matches are distributed among these distances:
9 4 0.10
10 10 0.25
11 5 0.12
12 5 0.12
13 16 0.40
ACGTcount: A:0.38, C:0.00, G:0.05, T:0.57
Consensus pattern (13 bp):
ATATATATTATGT
Found at i:36968337 original size:24 final size:23
Alignment explanation
Indices: 36968309--36968382 Score: 58
Period size: 24 Copynumber: 3.0 Consensus size: 23
36968299 ACGTATACGC
36968309 TATGTAAATATTTTAATATTATA
1 TATGTAAATATTTTAATATTATA
* **
36968332 TCATGTATACATTTTTTATATATTACG
1 T-ATGTA-A-ATATTTTA-ATATTATA
* * *
36968359 TATATATATCTTTTAATATTATA
1 TATGTAAATATTTTAATATTATA
36968382 T
1 T
36968383 TTTTATTATT
Statistics
Matches: 39, Mismatches: 8, Indels: 8
0.71 0.15 0.15
Matches are distributed among these distances:
23 8 0.21
24 12 0.31
25 1 0.03
26 11 0.28
27 7 0.18
ACGTcount: A:0.36, C:0.05, G:0.04, T:0.54
Consensus pattern (23 bp):
TATGTAAATATTTTAATATTATA
Found at i:36968399 original size:37 final size:35
Alignment explanation
Indices: 36968344--36968417 Score: 96
Period size: 34 Copynumber: 2.1 Consensus size: 35
36968334 ATGTATACAT
*
36968344 TTTTTATATATTACGTATATATATCTTTTAATATTATA
1 TTTTTATATATTACG--TATATATC-TTTAACATTATA
*
36968382 TTTTTAT-TATTATGTATATATCTTTAACATTATA
1 TTTTTATATATTACGTATATATCTTTAACATTATA
36968416 TT
1 TT
36968418 ATATTTCTTA
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
34 13 0.38
35 8 0.24
37 6 0.18
38 7 0.21
ACGTcount: A:0.32, C:0.05, G:0.03, T:0.59
Consensus pattern (35 bp):
TTTTTATATATTACGTATATATCTTTAACATTATA
Found at i:36968428 original size:20 final size:20
Alignment explanation
Indices: 36968374--36968428 Score: 51
Period size: 20 Copynumber: 2.8 Consensus size: 20
36968364 ATATCTTTTA
**
36968374 ATATTATATTT-TTATTATT
1 ATATTATATTTCTTAACATT
* *
36968393 AT-GTATATATCTTTAACATT
1 ATATTATATTTC-TTAACATT
36968413 ATATTATATTTCTTAA
1 ATATTATATTTCTTAA
36968429 TACCGTATTA
Statistics
Matches: 27, Mismatches: 6, Indels: 5
0.71 0.16 0.13
Matches are distributed among these distances:
18 6 0.22
19 2 0.07
20 12 0.44
21 7 0.26
ACGTcount: A:0.35, C:0.05, G:0.02, T:0.58
Consensus pattern (20 bp):
ATATTATATTTCTTAACATT
Found at i:36968549 original size:21 final size:22
Alignment explanation
Indices: 36968523--36968564 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 22
36968513 ATATATATAC
36968523 TTTTTATATAT-AATATTATTT
1 TTTTTATATATCAATATTATTT
*
36968544 TTTTTATATATCATTATTATT
1 TTTTTATATATCAATATTATT
36968565 ATACTTATTG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 11 0.58
22 8 0.42
ACGTcount: A:0.31, C:0.02, G:0.00, T:0.67
Consensus pattern (22 bp):
TTTTTATATATCAATATTATTT
Found at i:36974133 original size:23 final size:23
Alignment explanation
Indices: 36974103--36974151 Score: 98
Period size: 23 Copynumber: 2.1 Consensus size: 23
36974093 ACAAGGTAGT
36974103 GGTGACTTGATCGATGTGAATCC
1 GGTGACTTGATCGATGTGAATCC
36974126 GGTGACTTGATCGATGTGAATCC
1 GGTGACTTGATCGATGTGAATCC
36974149 GGT
1 GGT
36974152 TCCCCTAGAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.20, C:0.16, G:0.33, T:0.31
Consensus pattern (23 bp):
GGTGACTTGATCGATGTGAATCC
Found at i:36978409 original size:74 final size:74
Alignment explanation
Indices: 36978280--36978421 Score: 230
Period size: 74 Copynumber: 1.9 Consensus size: 74
36978270 TGAAATACTG
*
36978280 GATTCTATGCAAAATGCAAAGCAGATTGACTATCACAAAATAAAGGAATAACTTTAGGATGATGA
1 GATTCTATGCAAAATGCAAAACAGATTGACTATCACAAAATAAAGGAATAACTTTAGGATGATGA
36978345 ACAGGGCAT
66 ACAGGGCAT
* * ** *
36978354 GATTCTATTCAATATGCAAAACAGATTGACTATCACAAAATAAATTAATAGCTTTAGGATGATGA
1 GATTCTATGCAAAATGCAAAACAGATTGACTATCACAAAATAAAGGAATAACTTTAGGATGATGA
36978419 ACA
66 ACA
36978422 CCTAAGCTCA
Statistics
Matches: 62, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
74 62 1.00
ACGTcount: A:0.44, C:0.13, G:0.17, T:0.26
Consensus pattern (74 bp):
GATTCTATGCAAAATGCAAAACAGATTGACTATCACAAAATAAAGGAATAACTTTAGGATGATGA
ACAGGGCAT
Found at i:36978601 original size:42 final size:43
Alignment explanation
Indices: 36978542--36978691 Score: 221
Period size: 43 Copynumber: 3.5 Consensus size: 43
36978532 CGCTATAGGT
*
36978542 CCCACAAACGCCGCTAAAGGTCGGGGCCTTTAGCAGCGC-TTC
1 CCCACAAACGCCGCTAAAGGTCGGGGCCTTTAGCGGCGCTTTC
* * *
36978584 CCCACAAACGCCGCTAAAAGTCAGGGCTTTTAGCGGCGCTTTC
1 CCCACAAACGCCGCTAAAGGTCGGGGCCTTTAGCGGCGCTTTC
** * *
36978627 CCCACAAATACTGCTAAAGGTCGGGGTCTTTAGCGGCGCTTTC
1 CCCACAAACGCCGCTAAAGGTCGGGGCCTTTAGCGGCGCTTTC
36978670 CCCACAAACGCCGCTAAAGGTC
1 CCCACAAACGCCGCTAAAGGTC
36978692 ATAAAATTTA
Statistics
Matches: 93, Mismatches: 14, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
42 35 0.38
43 58 0.62
ACGTcount: A:0.23, C:0.33, G:0.24, T:0.19
Consensus pattern (43 bp):
CCCACAAACGCCGCTAAAGGTCGGGGCCTTTAGCGGCGCTTTC
Found at i:36979407 original size:43 final size:43
Alignment explanation
Indices: 36979335--36979512 Score: 259
Period size: 43 Copynumber: 4.1 Consensus size: 43
36979325 AAAAATTTGT
* *
36979335 GGCGTTTATGGGGAAAAAACGCCGCTAAAGGTCAAGGCTTTTAGC
1 GGCGTTTGT-GGG-AAAAGCGCCGCTAAAGGTCAAGGCTTTTAGC
* *
36979380 GGCATTTGTGGGAAAACCGCCGCTAAAGGTCAAGGCTTTTAGC
1 GGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCAAGGCTTTTAGC
* *
36979423 GGCGTTTGTGAGAAAAGCGCTGCTAAAGGTCAAGGCTTTTAGC
1 GGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCAAGGCTTTTAGC
*
36979466 GGCGTTTG-GGATAAAAGCGCCGCTAAAGGTCAAGGCTTTTAGC
1 GGCGTTTGTGG-GAAAAGCGCCGCTAAAGGTCAAGGCTTTTAGC
36979509 GGCG
1 GGCG
36979513 CTTTTTTTAC
Statistics
Matches: 122, Mismatches: 10, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
42 1 0.01
43 111 0.91
44 3 0.02
45 7 0.06
ACGTcount: A:0.26, C:0.19, G:0.33, T:0.23
Consensus pattern (43 bp):
GGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCAAGGCTTTTAGC
Found at i:36985578 original size:9 final size:9
Alignment explanation
Indices: 36985564--36985744 Score: 98
Period size: 9 Copynumber: 19.6 Consensus size: 9
36985554 TATTTAAGTA
36985564 TTATGTAAG
1 TTATGTAAG
36985573 TTATGTAAG
1 TTATGTAAG
*
36985582 TTATGATATG
1 TTATG-TAAG
* * *
36985592 ATATAT-AT
1 TTATGTAAG
*
36985600 TTATGTAAA
1 TTATGTAAG
* *
36985609 TTATAT-AT
1 TTATGTAAG
*
36985617 TTATCTAAG
1 TTATGTAAG
36985626 TTATGTAAG
1 TTATGTAAG
*
36985635 TTATGTAAA
1 TTATGTAAG
*
36985644 TTATGATATAAAA
1 TTATG---T-AAG
*
36985657 TATATTTAAG
1 T-TATGTAAG
36985667 TATTATGTAAG
1 --TTATGTAAG
36985678 TTATGTAAG
1 TTATGTAAG
* *
36985687 TTATAT-AT
1 TTATGTAAG
*
36985695 TTATCTAAG
1 TTATGTAAG
*
36985704 TTATATAAG
1 TTATGTAAG
*
36985713 TTATGTACG
1 TTATGTAAG
*
36985722 TTTTGTAAG
1 TTATGTAAG
* *
36985731 TTATATAAA
1 TTATGTAAG
36985740 TTATG
1 TTATG
36985745 ATATCAAATA
Statistics
Matches: 131, Mismatches: 30, Indels: 22
0.72 0.16 0.12
Matches are distributed among these distances:
8 16 0.12
9 90 0.69
10 8 0.06
11 8 0.06
12 2 0.02
13 4 0.03
14 3 0.02
ACGTcount: A:0.38, C:0.02, G:0.13, T:0.48
Consensus pattern (9 bp):
TTATGTAAG
Found at i:36985615 original size:17 final size:17
Alignment explanation
Indices: 36985593--36985652 Score: 66
Period size: 17 Copynumber: 3.4 Consensus size: 17
36985583 TATGATATGA
36985593 TATATATTTATGTAAAT
1 TATATATTTATGTAAAT
* *
36985610 TATATATTTATCTAAGT
1 TATATATTTATGTAAAT
* *
36985627 TATGTAAGTTATGTAAAT
1 TATAT-ATTTATGTAAAT
36985645 TATGATAT
1 TAT-ATAT
36985653 AAAATATATT
Statistics
Matches: 33, Mismatches: 8, Indels: 3
0.75 0.18 0.07
Matches are distributed among these distances:
17 19 0.58
18 13 0.39
19 1 0.03
ACGTcount: A:0.38, C:0.02, G:0.10, T:0.50
Consensus pattern (17 bp):
TATATATTTATGTAAAT
Found at i:36985678 original size:96 final size:96
Alignment explanation
Indices: 36985573--36985775 Score: 291
Period size: 96 Copynumber: 2.1 Consensus size: 96
36985563 ATTATGTAAG
* * *
36985573 TTATGTAAGTTATGATATGATATATATTTATGTAAATTATAT-ATTTATCTAAGTTATGTAAGTT
1 TTATGTAAGTTATG-TAAGATATATATTTATCTAAATTATATAAGTTATCTAAGTTATGTAAGTT
*
36985637 ATGTAAATTATGATATAAAATATATTTAAGTA
65 ATATAAATTATGATATAAAATATATTTAAGTA
* * * * *
36985669 TTATGTAAGTTATGTAAGTTATATATTTATCTAAGTTATATAAGTTATGTACGTTTTGTAAGTTA
1 TTATGTAAGTTATGTAAGATATATATTTATCTAAATTATATAAGTTATCTAAGTTATGTAAGTTA
* *
36985734 TATAAATTATGATATCAAATATATTTATGTA
66 TATAAATTATGATATAAAATATATTTAAGTA
36985765 TTATGTAAGTT
1 TTATGTAAGTT
36985776 TTTTATTTCA
Statistics
Matches: 95, Mismatches: 11, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
95 23 0.24
96 72 0.76
ACGTcount: A:0.38, C:0.02, G:0.12, T:0.48
Consensus pattern (96 bp):
TTATGTAAGTTATGTAAGATATATATTTATCTAAATTATATAAGTTATCTAAGTTATGTAAGTTA
TATAAATTATGATATAAAATATATTTAAGTA
Found at i:36985703 original size:17 final size:17
Alignment explanation
Indices: 36985678--36985710 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
36985668 ATTATGTAAG
*
36985678 TTATGTAAGTTATATAT
1 TTATCTAAGTTATATAT
36985695 TTATCTAAGTTATATA
1 TTATCTAAGTTATATA
36985711 AGTTATGTAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.36, C:0.03, G:0.09, T:0.52
Consensus pattern (17 bp):
TTATCTAAGTTATATAT
Found at i:36985869 original size:15 final size:15
Alignment explanation
Indices: 36985849--36985878 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
36985839 AAGTAGCAGG
36985849 ATTAAATAATATTTA
1 ATTAAATAATATTTA
36985864 ATTAAATAATATTTA
1 ATTAAATAATATTTA
36985879 TAAAAATTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (15 bp):
ATTAAATAATATTTA
Found at i:36986101 original size:40 final size:40
Alignment explanation
Indices: 36986057--36986170 Score: 91
Period size: 40 Copynumber: 3.0 Consensus size: 40
36986047 TAATATAAAA
36986057 AAATAGTAATTTGAATATAATAATATAAAAAAAGAATCGT
1 AAATAGTAATTTGAATATAATAATATAAAAAAAGAATCGT
* ** * * * *
36986097 AAATATTAAAATCAA-A-CATTAT-TAATATAAA-AA----
1 AAATAGTAATTTGAATATAATAATATAA-AAAAAGAATCGT
*
36986130 AAATAGTAATTTGAATATAATAATATGAAAAAAGAATCGT
1 AAATAGTAATTTGAATATAATAATATAAAAAAAGAATCGT
36986170 A
1 A
36986171 GTTTAATTTT
Statistics
Matches: 50, Mismatches: 15, Indels: 18
0.60 0.18 0.22
Matches are distributed among these distances:
33 11 0.22
34 1 0.02
35 8 0.16
36 4 0.08
37 5 0.10
38 8 0.16
39 1 0.02
40 12 0.24
ACGTcount: A:0.59, C:0.04, G:0.08, T:0.30
Consensus pattern (40 bp):
AAATAGTAATTTGAATATAATAATATAAAAAAAGAATCGT
Found at i:36986122 original size:72 final size:73
Alignment explanation
Indices: 36986006--36986170 Score: 273
Period size: 73 Copynumber: 2.3 Consensus size: 73
36985996 AAGTACATAT
36986006 TAATATAAAAAAAG-ATGCGT-AATAAAAAAATCAAACATTATTAATAT-AAAAAAATAGTAATT
1 TAATATAAAAAAAGAAT-CGTAAATAAAAAAATCAAACATTATTAATATAAAAAAAATAGTAATT
36986068 TGAATATAA
65 TGAATATAA
**
36986077 TAATATAAAAAAAGAATCGTAAATATTAAAATCAAACATTATTAATATAAAAAAAATAGTAATTT
1 TAATATAAAAAAAGAATCGTAAATAAAAAAATCAAACATTATTAATATAAAAAAAATAGTAATTT
36986142 GAATATAA
66 GAATATAA
*
36986150 TAATATGAAAAAAGAATCGTA
1 TAATATAAAAAAAGAATCGTA
36986171 GTTTAATTTT
Statistics
Matches: 88, Mismatches: 3, Indels: 4
0.93 0.03 0.04
Matches are distributed among these distances:
71 17 0.19
72 27 0.31
73 44 0.50
ACGTcount: A:0.60, C:0.04, G:0.07, T:0.28
Consensus pattern (73 bp):
TAATATAAAAAAAGAATCGTAAATAAAAAAATCAAACATTATTAATATAAAAAAAATAGTAATTT
GAATATAA
Found at i:36986438 original size:275 final size:276
Alignment explanation
Indices: 36986096--36986650 Score: 1076
Period size: 275 Copynumber: 2.0 Consensus size: 276
36986086 AAAAGAATCG
*
36986096 TAAATATTAAAATCAAACATTATTAATATAAAAAAAATAGTAATTTGAATATAATAATATGAAAA
1 TAAATATTAAAATCAAACATTATTAATATAAAAAAAATAGTAATTTGAATATAATAATATAAAAA
36986161 AAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATATTCAATAGTAAATGAGCTCGAT
66 AAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATATTCAATAGTAAATGAGCTCGAT
*
36986226 AGAACTATTTTCAAGTCTTTTTGATTTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGG
131 AGAACTATTTTCAAGTCTTTTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGG
36986291 GAGGATCCATTATATCTTGCAGCTCAATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTT
196 GAGGATCCATTATATCTTGCAGCTCAATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTT
36986356 GAATCTTTAAAATATT
261 GAATCTTTAAAATATT
36986372 TAAATATTAAAATCAAACATTATTAATAT-AAAAAAATAGTAATTTGAATATAATAATATAAAAA
1 TAAATATTAAAATCAAACATTATTAATATAAAAAAAATAGTAATTTGAATATAATAATATAAAAA
36986436 AAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATATTCAATAGTAAATGAGCTCGAT
66 AAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATATTCAATAGTAAATGAGCTCGAT
36986501 AGAACTATTTTCAAGTCTTTTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGG
131 AGAACTATTTTCAAGTCTTTTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGG
*
36986566 GAGGATCCATTATATCTTGCAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTT
196 GAGGATCCATTATATCTTGCAGCTCAATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTT
36986631 GAATCTTTAAAATATT
261 GAATCTTTAAAATATT
36986647 TAAA
1 TAAA
36986651 ATAAGGTTGG
Statistics
Matches: 276, Mismatches: 3, Indels: 1
0.99 0.01 0.00
Matches are distributed among these distances:
275 247 0.89
276 29 0.11
ACGTcount: A:0.39, C:0.12, G:0.13, T:0.36
Consensus pattern (276 bp):
TAAATATTAAAATCAAACATTATTAATATAAAAAAAATAGTAATTTGAATATAATAATATAAAAA
AAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATATTCAATAGTAAATGAGCTCGAT
AGAACTATTTTCAAGTCTTTTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGG
GAGGATCCATTATATCTTGCAGCTCAATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTT
GAATCTTTAAAATATT
Found at i:36986932 original size:15 final size:15
Alignment explanation
Indices: 36986912--36986940 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
36986902 AGAATTTTGA
36986912 AATAAAACGTACCTT
1 AATAAAACGTACCTT
36986927 AATAAAACGTACCT
1 AATAAAACGTACCT
36986941 GGTCTACTCC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.48, C:0.21, G:0.07, T:0.24
Consensus pattern (15 bp):
AATAAAACGTACCTT
Found at i:36987449 original size:183 final size:183
Alignment explanation
Indices: 36987141--36987692 Score: 1032
Period size: 183 Copynumber: 3.0 Consensus size: 183
36987131 CCTAGAACAG
*
36987141 ATGTAAGATTATAAGAGTAGCACCAAATATATTTCAGTTTAAGCAAATCTAAAAACTTTATCTAT
1 ATGTAAGATTATAAGAGTAGCACCAAATATATTTCAGTTTAAGCAAATATAAAAACTTTATCTAT
36987206 ATCAGTACCAAATATTAATTCGAAGATTAAATGGCAGCTTCAGTTGAACCAATAGTTGCAGGAGG
66 ATCAGTACCAAATATTAATTCGAAGATTAAATGGCAGCTTCAGTTGAACCAATAGTTGCAGGAGG
36987271 AGCAGGAATCAGTAACTGAAATACATACAACATTAATTCACTAATACAGACAC
131 AGCAGGAATCAGTAACTGAAATACATACAACATTAATTCACTAATACAGACAC
*
36987324 ATGTAAGATTATAAGAGTAGCACCAAATATATTTCAGTTCAAGCAAATATAAAAACTTTATCTAT
1 ATGTAAGATTATAAGAGTAGCACCAAATATATTTCAGTTTAAGCAAATATAAAAACTTTATCTAT
36987389 ATCAGTACCAAATATTAATTCGAAGATTAAATGGCAGCTTCAGTTGAACCAATAGTTGCAGGAGG
66 ATCAGTACCAAATATTAATTCGAAGATTAAATGGCAGCTTCAGTTGAACCAATAGTTGCAGGAGG
36987454 AGCAGGAATCAGTAACTGAAATACATACAACATTAATTCACTAATACAGACAC
131 AGCAGGAATCAGTAACTGAAATACATACAACATTAATTCACTAATACAGACAC
* *
36987507 ATGTAAGACTATAAGAGTAGCACCAAATATATTTCAGTTTAAGCAAATATGAAAACTTTATCTAT
1 ATGTAAGATTATAAGAGTAGCACCAAATATATTTCAGTTTAAGCAAATATAAAAACTTTATCTAT
36987572 ATCAGTACCAAATATTAATTCGAAGATTAAATGGCAGCTTCAGTTGAACCAATAGTTGCAGGAGG
66 ATCAGTACCAAATATTAATTCGAAGATTAAATGGCAGCTTCAGTTGAACCAATAGTTGCAGGAGG
* * * *
36987637 AGCAGGAAGCAGTAACTGAAACATATACAACATTAATTCACTAATATAGACAC
131 AGCAGGAATCAGTAACTGAAATACATACAACATTAATTCACTAATACAGACAC
36987690 ATG
1 ATG
36987693 GAACTATATC
Statistics
Matches: 360, Mismatches: 9, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
183 360 1.00
ACGTcount: A:0.42, C:0.16, G:0.15, T:0.27
Consensus pattern (183 bp):
ATGTAAGATTATAAGAGTAGCACCAAATATATTTCAGTTTAAGCAAATATAAAAACTTTATCTAT
ATCAGTACCAAATATTAATTCGAAGATTAAATGGCAGCTTCAGTTGAACCAATAGTTGCAGGAGG
AGCAGGAATCAGTAACTGAAATACATACAACATTAATTCACTAATACAGACAC
Found at i:36990529 original size:15 final size:15
Alignment explanation
Indices: 36990509--36990557 Score: 52
Period size: 15 Copynumber: 3.5 Consensus size: 15
36990499 GGTAAAAATT
36990509 TTGGGGGAGAAGAAG
1 TTGGGGGAGAAGAAG
*
36990524 TT-GGGG-G-A-AAT
1 TTGGGGGAGAAGAAG
*
36990535 TTGAGGGAGAAGAAG
1 TTGGGGGAGAAGAAG
36990550 TTGGGGGA
1 TTGGGGGA
36990558 AATCGGGGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 8
0.68 0.11 0.21
Matches are distributed among these distances:
11 4 0.15
12 4 0.15
13 2 0.08
14 5 0.19
15 11 0.42
ACGTcount: A:0.31, C:0.00, G:0.51, T:0.18
Consensus pattern (15 bp):
TTGGGGGAGAAGAAG
Found at i:36990542 original size:26 final size:26
Alignment explanation
Indices: 36990508--36990560 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
36990498 GGGTAAAAAT
*
36990508 TTTGGGGGAGAAGAAGTTGGGGGAAA
1 TTTGAGGGAGAAGAAGTTGGGGGAAA
36990534 TTTGAGGGAGAAGAAGTTGGGGGAAA
1 TTTGAGGGAGAAGAAGTTGGGGGAAA
36990560 T
1 T
36990561 CGGGGAAATT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.32, C:0.00, G:0.47, T:0.21
Consensus pattern (26 bp):
TTTGAGGGAGAAGAAGTTGGGGGAAA
Found at i:36990870 original size:28 final size:28
Alignment explanation
Indices: 36990838--36990895 Score: 73
Period size: 28 Copynumber: 2.1 Consensus size: 28
36990828 AATCAAAACT
*
36990838 CTAT-ACCTTAAACCATTAAACTATATCC
1 CTATAACCTTAAACC-CTAAACTATATCC
* *
36990866 CTATAACCTTAATCCCTAAAGTATATCC
1 CTATAACCTTAAACCCTAAACTATATCC
36990894 CT
1 CT
36990896 TAAACCCTAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
28 17 0.65
29 9 0.35
ACGTcount: A:0.36, C:0.29, G:0.02, T:0.33
Consensus pattern (28 bp):
CTATAACCTTAAACCCTAAACTATATCC
Found at i:36990896 original size:21 final size:21
Alignment explanation
Indices: 36990872--36990915 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
36990862 ATCCCTATAA
* *
36990872 CCTTAATCCCTAAAGTATATC
1 CCTTAAACCCTAAACTATATC
36990893 CCTTAAACCCTAAACTATATC
1 CCTTAAACCCTAAACTATATC
36990914 CC
1 CC
36990916 CTAACCATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.34, C:0.34, G:0.02, T:0.30
Consensus pattern (21 bp):
CCTTAAACCCTAAACTATATC
Found at i:36991349 original size:41 final size:41
Alignment explanation
Indices: 36991262--36991480 Score: 309
Period size: 41 Copynumber: 5.4 Consensus size: 41
36991252 AATCCTAAAC
* *
36991262 TTTTTAGCGGCGTTTTACCAAAAACGCCGC-AATGCTCTTA
1 TTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGA
*
36991302 TTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCCGA
1 TTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGA
* * *
36991343 TTTTTAGCGGCGCTTTACCAAAAGCGTCGCTAATGCTCCGA
1 TTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGA
* *
36991384 TTTTTAGTGGCGTTTAACCAAAAGCGCCGCTAATGCTCTTG-
1 TTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTC-TGA
* *
36991425 TTTTTAGTGGCGTTTTACCAAAAGCGCCGCTATTGCTCTG-
1 TTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGA
*
36991465 CTTTTAGCGGCGTTTT
1 TTTTTAGCGGCGTTTT
36991481 TGGTAAAACG
Statistics
Matches: 163, Mismatches: 14, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
40 45 0.28
41 117 0.72
42 1 0.01
ACGTcount: A:0.21, C:0.24, G:0.21, T:0.34
Consensus pattern (41 bp):
TTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGA
Found at i:36991550 original size:12 final size:12
Alignment explanation
Indices: 36991535--36991560 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
36991525 GTTTTTTGAG
36991535 AAAACGCCGCTA
1 AAAACGCCGCTA
36991547 AAAACGCCGCTA
1 AAAACGCCGCTA
36991559 AA
1 AA
36991561 GACCTGTTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.46, C:0.31, G:0.15, T:0.08
Consensus pattern (12 bp):
AAAACGCCGCTA
Found at i:36992009 original size:21 final size:22
Alignment explanation
Indices: 36991977--36992029 Score: 72
Period size: 22 Copynumber: 2.4 Consensus size: 22
36991967 CAACTTTCAG
36991977 ACACCATAAATTGT-AGCATTTA
1 ACACC-TAAATTGTCAGCATTTA
*
36991999 ACACCTAAATTTTCAGCATTTA
1 ACACCTAAATTGTCAGCATTTA
*
36992021 ACACATAAA
1 ACACCTAAA
36992030 ATGGTTTTCT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
21 7 0.25
22 21 0.75
ACGTcount: A:0.43, C:0.21, G:0.06, T:0.30
Consensus pattern (22 bp):
ACACCTAAATTGTCAGCATTTA
Found at i:36992464 original size:23 final size:23
Alignment explanation
Indices: 36992434--36992925 Score: 361
Period size: 23 Copynumber: 21.5 Consensus size: 23
36992424 GCTGCACTTT
36992434 AACACTTCAATTTACAGCATTTA
1 AACACTTCAATTTACAGCATTTA
*
36992457 AACACTTCAATTTGCAGCACTTT-
1 AACACTTCAATTTACAGCA-TTTA
* *
36992480 AACA-TCTCAATTAACAACATTTA
1 AACACT-TCAATTTACAGCATTTA
* * *
36992503 TACAC--CATAATTACAGCGA-TAA
1 AACACTTCA-ATTTACAGC-ATTTA
* **
36992525 AACA-TCTCAATTTCCAGCAACTA
1 AACACT-TCAATTTACAGCATTTA
* * *
36992548 AACACTTCAATTTGCAGTACTTA
1 AACACTTCAATTTACAGCATTTA
*
36992571 AACACTCCAATTTACAGCACTCTT-
1 AACACTTCAATTTACAGCA-T-TTA
*
36992595 AACACTTCAATTTGCAGCACTTT-
1 AACACTTCAATTTACAGCA-TTTA
36992618 AACACTTCAATTTACAGCATTTA
1 AACACTTCAATTTACAGCATTTA
**
36992641 AACACTTCAATTTGTAGCACTTT-
1 AACACTTCAATTTACAGCA-TTTA
* *
36992664 AACA-TCTCAATTAACAACATTTA
1 AACACT-TCAATTTACAGCATTTA
* * * *
36992687 TACACCTCAA-GTACAGCGA-TAA
1 AACACTTCAATTTACAGC-ATTTA
* * **
36992709 AACA-TCTCAATTTCCAACAACTA
1 AACACT-TCAATTTACAGCATTTA
** * *
36992732 AACACTTCAATTTGTAGTACTTA
1 AACACTTCAATTTACAGCATTTA
*
36992755 AACACTTCAATTTACAACATTTA
1 AACACTTCAATTTACAGCATTTA
*
36992778 AGCACTTCAATTTACAGCATTTA
1 AACACTTCAATTTACAGCATTTA
* *
36992801 TACACTTCAATTTATAGCATTT-
1 AACACTTCAATTTACAGCATTTA
*
36992823 AACACTTCAATTTGCAGCACTTT-
1 AACACTTCAATTTACAGCA-TTTA
36992846 AACACTTCAATTTACAGCATTTA
1 AACACTTCAATTTACAGCATTTA
* *
36992869 AACACTTCAATTTGCTGCACTTT-
1 AACACTTCAATTTACAGCA-TTTA
* *
36992892 AACA-TCTCAATTAACAACATTTA
1 AACACT-TCAATTTACAGCATTTA
* *
36992915 TACACCTCAAT
1 AACACTTCAAT
36992926 CAACATCTCA
Statistics
Matches: 368, Mismatches: 72, Indels: 58
0.74 0.14 0.12
Matches are distributed among these distances:
21 2 0.01
22 60 0.16
23 272 0.74
24 32 0.09
25 2 0.01
ACGTcount: A:0.38, C:0.24, G:0.05, T:0.33
Consensus pattern (23 bp):
AACACTTCAATTTACAGCATTTA
Found at i:36992490 original size:46 final size:45
Alignment explanation
Indices: 36992418--36992925 Score: 458
Period size: 46 Copynumber: 11.1 Consensus size: 45
36992408 CATAATTTGC
*
36992418 TCAA-TTGCTGCACTTTAACACTTCAATTTACAGCATTTAAACACT
1 TCAATTTGCAGCACTTTAACAC-TCAATTTACAGCATTTAAACACT
* * *
36992463 TCAATTTGCAGCACTTTAACATCTCAATTAACAACATTTATACAC-
1 TCAATTTGCAGCACTTTAACA-CTCAATTTACAGCATTTAAACACT
* * ** * **
36992508 -CATAATTACAGCGA-TAAAACATCTCAATTTCCAGCAACTAAACACT
1 TCA-ATTTGCAGC-ACTTTAACA-CTCAATTTACAGCATTTAAACACT
* *
36992554 TCAATTTGCAGTACTTAAACACTCCAATTTACAGCACTCTT-AACACT
1 TCAATTTGCAGCACTTTAACACT-CAATTTACAGCA-T-TTAAACACT
36992601 TCAATTTGCAGCACTTTAACACTTCAATTTACAGCATTTAAACACT
1 TCAATTTGCAGCACTTTAACAC-TCAATTTACAGCATTTAAACACT
* * * * *
36992647 TCAATTTGTAGCACTTTAACATCTCAATTAACAACATTTATACACC
1 TCAATTTGCAGCACTTTAACA-CTCAATTTACAGCATTTAAACACT
* * ** * * **
36992693 TCAA-GTACAGCGA-TAAAACATCTCAATTTCCAACAACTAAACACT
1 TCAATTTGCAGC-ACTTTAACA-CTCAATTTACAGCATTTAAACACT
* * * * *
36992738 TCAATTTGTAGTACTTAAACACTTCAATTTACAACATTTAAGCACT
1 TCAATTTGCAGCACTTTAACAC-TCAATTTACAGCATTTAAACACT
* *
36992784 TCAATTTACAGCA-TTTATACACTTCAATTTATAGCATTT-AACACT
1 TCAATTTGCAGCACTTTA-ACAC-TCAATTTACAGCATTTAAACACT
36992829 TCAATTTGCAGCACTTTAACACTTCAATTTACAGCATTTAAACACT
1 TCAATTTGCAGCACTTTAACAC-TCAATTTACAGCATTTAAACACT
* * * * *
36992875 TCAATTTGCTGCACTTTAACATCTCAATTAACAACATTTATACACC
1 TCAATTTGCAGCACTTTAACA-CTCAATTTACAGCATTTAAACACT
36992921 TCAAT
1 TCAAT
36992926 CAACATCTCA
Statistics
Matches: 380, Mismatches: 62, Indels: 41
0.79 0.13 0.08
Matches are distributed among these distances:
44 2 0.01
45 113 0.30
46 220 0.58
47 43 0.11
48 2 0.01
ACGTcount: A:0.37, C:0.24, G:0.06, T:0.33
Consensus pattern (45 bp):
TCAATTTGCAGCACTTTAACACTCAATTTACAGCATTTAAACACT
Found at i:36992736 original size:184 final size:183
Alignment explanation
Indices: 36992418--36992878 Score: 718
Period size: 184 Copynumber: 2.5 Consensus size: 183
36992408 CATAATTTGC
*
36992418 TCAA-TTGCTGCACTTTAACACTTCAATTTACAGCATTTAAACACTTCAATTTGCAGCACTTTAA
1 TCAATTTGCAGCACTTTAACACTTCAATTTACAGCATTTAAACACTTCAATTTGCAGCACTTTAA
* *
36992482 CATCTCAATTAACAACATTTATACACCAT-AATTACAGCGATAAAACATCTCAATTTCCAGCAAC
66 CATCTCAATTAACAACATTTATACACC-TCAAGTACAGCGATAAAACATCTCAATTTCCAACAAC
*
36992546 TAAACACTTCAATTTGCAGTACTTAAACACTCCAATTTACAGCACTCTTAA-CACT
130 TAAACACTTCAATTTGCAGTACTTAAACACTCCAATTTACAACA-T-TTAAGCACT
*
36992601 TCAATTTGCAGCACTTTAACACTTCAATTTACAGCATTTAAACACTTCAATTTGTAGCACTTTAA
1 TCAATTTGCAGCACTTTAACACTTCAATTTACAGCATTTAAACACTTCAATTTGCAGCACTTTAA
36992666 CATCTCAATTAACAACATTTATACACCTCAAGTACAGCGATAAAACATCTCAATTTCCAACAACT
66 CATCTCAATTAACAACATTTATACACCTCAAGTACAGCGATAAAACATCTCAATTTCCAACAACT
* *
36992731 AAACACTTCAATTTGTAGTACTTAAACACTTCAATTTACAACATTTAAGCACT
131 AAACACTTCAATTTGCAGTACTTAAACACTCCAATTTACAACATTTAAGCACT
* *
36992784 TCAATTTACAGCA-TTTATACACTTCAATTTATAGCATTT-AACACTTCAATTTGCAGCACTTTA
1 TCAATTTGCAGCACTTTA-ACACTTCAATTTACAGCATTTAAACACTTCAATTTGCAGCACTTTA
* * * *
36992847 ACA-CTTCAATTTACAGCATTTAAACACTTCAA
65 ACATC-TCAATTAACAACATTTATACACCTCAA
36992879 TTTGCTGCAC
Statistics
Matches: 259, Mismatches: 14, Indels: 11
0.91 0.05 0.04
Matches are distributed among these distances:
181 1 0.00
182 57 0.22
183 42 0.16
184 159 0.61
ACGTcount: A:0.37, C:0.24, G:0.06, T:0.33
Consensus pattern (183 bp):
TCAATTTGCAGCACTTTAACACTTCAATTTACAGCATTTAAACACTTCAATTTGCAGCACTTTAA
CATCTCAATTAACAACATTTATACACCTCAAGTACAGCGATAAAACATCTCAATTTCCAACAACT
AAACACTTCAATTTGCAGTACTTAAACACTCCAATTTACAACATTTAAGCACT
Found at i:36992756 original size:114 final size:114
Alignment explanation
Indices: 36992595--36992925 Score: 386
Period size: 114 Copynumber: 2.9 Consensus size: 114
36992585 CAGCACTCTT
* * *
36992595 AACACTTCAATTTGCAGCACTTTAACACTTCAATTTACAGCATTTAAACACTTCAATTTGTAGCA
1 AACACTTCAATTTCCAACACTTAAACACTTCAATTTACAGCATTTAAACACTTCAATTTGTAGCA
36992660 CTTTAACATCTCAATTAACAACATTTATACACCTCAA-GTACAGCGATAA
66 CTTTAACATCTCAATTAACAACATTTATACACCTCAATGTACAGC-ATAA
** * * ** *
36992709 AACA-TCTCAATTTCCAACAAC-TAAACACTTCAATTTGTAGTACTTAAACACTTCAATTTACAA
1 AACACT-TCAATTTCCAAC-ACTTAAACACTTCAATTTACAGCATTTAAACACTTCAATTTGTAG
* * * * * **
36992772 CA-TTTAAGCA-CTTCAATTTACAGCATTTATACACTTCAATTTATAGCATTT
64 CACTTTAA-CATC-TCAATTAACAACATTTATACACCTCAATGTACAGCATAA
* * *
36992823 AACACTTCAATTTGCAGCACTTTAACACTTCAATTTACAGCATTTAAACACTTCAATTTGCT-GC
1 AACACTTCAATTTCCAACACTTAAACACTTCAATTTACAGCATTTAAACACTTCAATTTG-TAGC
36992887 ACTTTAACATCTCAATTAACAACATTTATACACCTCAAT
65 ACTTTAACATCTCAATTAACAACATTTATACACCTCAAT
36992926 CAACATCTCA
Statistics
Matches: 177, Mismatches: 30, Indels: 20
0.78 0.13 0.09
Matches are distributed among these distances:
113 9 0.05
114 154 0.87
115 14 0.08
ACGTcount: A:0.37, C:0.24, G:0.05, T:0.34
Consensus pattern (114 bp):
AACACTTCAATTTCCAACACTTAAACACTTCAATTTACAGCATTTAAACACTTCAATTTGTAGCA
CTTTAACATCTCAATTAACAACATTTATACACCTCAATGTACAGCATAA
Found at i:36992881 original size:91 final size:91
Alignment explanation
Indices: 36992431--36992925 Score: 447
Period size: 91 Copynumber: 5.4 Consensus size: 91
36992421 ATTGCTGCAC
*
36992431 TTTAACACTTCAATTTACAGCATTTAAACACTTCAATTTGCAGCACTTTAACA-TCTCAATTAAC
1 TTTAACACTTCAATTTACAGCATTT-AACACTTCAATTTGCAGCACTTTAACACT-TCAATTTAC
* *
36992495 AACATTTATACAC--CATAATTACAGCGA
64 AACATTTAAACACTTCA-ATTTACAGCGA
** * * * * * *
36992522 TAAAACA-TCTCAATTTCCAGCAACTAAACACTTCAATTTGCAGTACTTAAACACTCCAATTTAC
1 TTTAACACT-TCAATTTACAGC-ATTTAACACTTCAATTTGCAGCACTTTAACACTTCAATTTAC
* *
36992586 AGCACTCTT-AACACTTCAATTTGCAGC-A
64 AACA-T-TTAAACACTTCAATTTACAGCGA
* *
36992614 CTTTAACACTTCAATTTACAGCATTTAAACACTTCAATTTGTAGCACTTTAACA-TCTCAATTAA
1 -TTTAACACTTCAATTTACAGCATTT-AACACTTCAATTTGCAGCACTTTAACACT-TCAATTTA
* * *
36992678 CAACATTTATACACCTCAA-GTACAGCGA
63 CAACATTTAAACACTTCAATTTACAGCGA
** * * * * * * *
36992706 TAAAACA-TCTCAATTTCCAACAACTAAACACTTCAATTTGTAGTACTTAAACACTTCAATTTAC
1 TTTAACACT-TCAATTTACAGC-ATTTAACACTTCAATTTGCAGCACTTTAACACTTCAATTTAC
*
36992770 AACATTTAAGCACTTCAATTTACAGC-A
64 AACATTTAAACACTTCAATTTACAGCGA
*
36992797 TTTATACACTTCAATTTATAGCATTTAACACTTCAATTTGCAGCACTTTAACACTTCAATTTACA
1 TTTA-ACACTTCAATTTACAGCATTTAACACTTCAATTTGCAGCACTTTAACACTTCAATTTACA
* * *
36992862 GCATTTAAACACTTCAATTTGCTGC-A
65 ACATTTAAACACTTCAATTTACAGCGA
* * *
36992888 CTTTAACA-TCTCAATTAACAACATTTATACACCTCAAT
1 -TTTAACACT-TCAATTTACAGCATTTA-ACACTTCAAT
36992926 CAACATCTCA
Statistics
Matches: 323, Mismatches: 59, Indels: 43
0.76 0.14 0.10
Matches are distributed among these distances:
90 3 0.01
91 201 0.62
92 56 0.17
93 60 0.19
94 3 0.01
ACGTcount: A:0.37, C:0.24, G:0.05, T:0.33
Consensus pattern (91 bp):
TTTAACACTTCAATTTACAGCATTTAACACTTCAATTTGCAGCACTTTAACACTTCAATTTACAA
CATTTAAACACTTCAATTTACAGCGA
Found at i:36994107 original size:12 final size:12
Alignment explanation
Indices: 36994092--36994141 Score: 50
Period size: 12 Copynumber: 4.2 Consensus size: 12
36994082 ACATACACAT
36994092 ATTAACATCTCA
1 ATTAACATCTCA
*
36994104 ATTAACA--ACA
1 ATTAACATCTCA
* *
36994114 TTTATACACCTCA
1 ATTA-ACATCTCA
36994127 ATTAACATCTCA
1 ATTAACATCTCA
36994139 ATT
1 ATT
36994142 TCCAGCAACT
Statistics
Matches: 30, Mismatches: 5, Indels: 6
0.73 0.12 0.15
Matches are distributed among these distances:
10 5 0.17
11 3 0.10
12 17 0.57
13 5 0.17
ACGTcount: A:0.42, C:0.24, G:0.00, T:0.34
Consensus pattern (12 bp):
ATTAACATCTCA
Found at i:36996255 original size:7 final size:7
Alignment explanation
Indices: 36996245--36996286 Score: 84
Period size: 7 Copynumber: 6.0 Consensus size: 7
36996235 AAATATTAAT
36996245 TTTTTTA
1 TTTTTTA
36996252 TTTTTTA
1 TTTTTTA
36996259 TTTTTTA
1 TTTTTTA
36996266 TTTTTTA
1 TTTTTTA
36996273 TTTTTTA
1 TTTTTTA
36996280 TTTTTTA
1 TTTTTTA
36996287 AATTTTTTTT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 35 1.00
ACGTcount: A:0.14, C:0.00, G:0.00, T:0.86
Consensus pattern (7 bp):
TTTTTTA
Found at i:36996292 original size:21 final size:21
Alignment explanation
Indices: 36996247--36996296 Score: 75
Period size: 21 Copynumber: 2.4 Consensus size: 21
36996237 ATATTAATTT
**
36996247 TTTTATTTTTTATTTTTTATT
1 TTTTATTTTTTATTTTTTAAA
36996268 TTTTATTTTTTATTTTTTAAA
1 TTTTATTTTTTATTTTTTAAA
36996289 TTTT-TTTT
1 TTTTATTTT
36996297 GAAGATTTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
20 4 0.15
21 23 0.85
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (21 bp):
TTTTATTTTTTATTTTTTAAA
Found at i:36996592 original size:45 final size:45
Alignment explanation
Indices: 36996542--36996643 Score: 104
Period size: 45 Copynumber: 2.3 Consensus size: 45
36996532 CCCATTCCCT
* *
36996542 TAACCC-TAAAACCCCTAACACC-TAAATCCTAAACTCTAAACCATA
1 TAACCCAT-AAACCCCTAAC-CCTTAAACCCTAAACCCTAAACCATA
* * *
36996587 TAACCCATAAACCCGTAACCCTTAACCCCTAAACCCTAAGCCATA
1 TAACCCATAAACCCCTAACCCTTAAACCCTAAACCCTAAACCATA
*
36996632 -AA-ACATAAACCC
1 TAACCCATAAACCC
36996644 TAAACTTCTA
Statistics
Matches: 49, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
43 9 0.18
44 4 0.08
45 35 0.71
46 1 0.02
ACGTcount: A:0.43, C:0.37, G:0.02, T:0.18
Consensus pattern (45 bp):
TAACCCATAAACCCCTAACCCTTAAACCCTAAACCCTAAACCATA
Found at i:36996623 original size:7 final size:7
Alignment explanation
Indices: 36996516--36996648 Score: 72
Period size: 7 Copynumber: 18.3 Consensus size: 7
36996506 CACACTAATT
36996516 ACCCTAA
1 ACCCTAA
*
36996523 ACCCTTA
1 ACCCTAA
* *
36996530 ACCCCAT
1 ACCCTAA
* *
36996537 TCCCTTA
1 ACCCTAA
36996544 ACCCTAAA
1 ACCCT-AA
36996552 ACCCCT-A
1 A-CCCTAA
36996559 ACACCTAA
1 AC-CCTAA
*
36996567 ATCCTAA
1 ACCCTAA
*
36996574 ACTCTAA
1 ACCCTAA
*
36996581 ACCATATA
1 ACCCTA-A
36996589 ACCCATAA
1 ACCC-TAA
36996597 ACCCGT-A
1 ACCC-TAA
36996604 ACCCTTAA
1 ACCC-TAA
*
36996612 CCCCTAA
1 ACCCTAA
36996619 ACCCTAA
1 ACCCTAA
* *
36996626 GCCATAA
1 ACCCTAA
* *
36996633 AACATAA
1 ACCCTAA
36996640 ACCCTAA
1 ACCCTAA
36996647 AC
1 AC
36996649 TTCTACCCCT
Statistics
Matches: 93, Mismatches: 26, Indels: 14
0.70 0.20 0.11
Matches are distributed among these distances:
6 1 0.01
7 68 0.73
8 18 0.19
9 6 0.06
ACGTcount: A:0.41, C:0.39, G:0.02, T:0.19
Consensus pattern (7 bp):
ACCCTAA
Found at i:36996974 original size:7 final size:7
Alignment explanation
Indices: 36996962--36997018 Score: 51
Period size: 7 Copynumber: 8.0 Consensus size: 7
36996952 CCAATGGCCA
36996962 TTAAACC
1 TTAAACC
36996969 TTAAACC
1 TTAAACC
*
36996976 ATAAAACC
1 -TTAAACC
* *
36996984 CTAGACC
1 TTAAACC
* *
36996991 ATAGACC
1 TTAAACC
36996998 TTAAACC
1 TTAAACC
36997005 TTAAACC
1 TTAAACC
*
36997012 CTAAACC
1 TTAAACC
36997019 CAAAAGTAAA
Statistics
Matches: 41, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
7 35 0.85
8 6 0.15
ACGTcount: A:0.44, C:0.32, G:0.04, T:0.21
Consensus pattern (7 bp):
TTAAACC
Found at i:36996982 original size:15 final size:15
Alignment explanation
Indices: 36996959--36997018 Score: 61
Period size: 14 Copynumber: 4.1 Consensus size: 15
36996949 ATACCAATGG
*
36996959 CCATTAAACCTTAAA
1 CCATTAAACCCTAAA
* *
36996974 CCATAAAACCCTAGA
1 CCATTAAACCCTAAA
* *
36996989 CCA-TAGACCTTAAA
1 CCATTAAACCCTAAA
36997003 CC-TTAAACCCTAAA
1 CCATTAAACCCTAAA
36997017 CC
1 CC
36997019 CAAAAGTAAA
Statistics
Matches: 35, Mismatches: 9, Indels: 3
0.74 0.19 0.06
Matches are distributed among these distances:
14 20 0.57
15 15 0.43
ACGTcount: A:0.43, C:0.33, G:0.03, T:0.20
Consensus pattern (15 bp):
CCATTAAACCCTAAA
Done.