Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100714657
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 3970000 characters in sequence are not A, C, G, or T
File 117 of 318
Found at i:36997247 original size:41 final size:40
Alignment explanation
Indices: 36997203--36997281 Score: 104
Period size: 40 Copynumber: 2.0 Consensus size: 40
36997193 TTACCTCTGT
* * * *
36997203 TTTTTAGCTGCGTTTTACCAAAAGCGCCGTTAATGCTCTA
1 TTTTTAGCGGCGCTTTACCAAAAACGCCGCTAATGCTCTA
* *
36997243 TTTTTAGCGGCGCTTTACTAAAAACGCCGCTATTGCTCT
1 TTTTTAGCGGCGCTTTACCAAAAACGCCGCTAATGCTCT
36997282 GTGTTTTACA
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 33 1.00
ACGTcount: A:0.22, C:0.24, G:0.18, T:0.37
Consensus pattern (40 bp):
TTTTTAGCGGCGCTTTACCAAAAACGCCGCTAATGCTCTA
Found at i:36999856 original size:11 final size:11
Alignment explanation
Indices: 36999842--36999880 Score: 53
Period size: 11 Copynumber: 3.6 Consensus size: 11
36999832 TTGGTTTTGT
36999842 TTTTGTTTTTC
1 TTTTGTTTTTC
36999853 TTTT-TTTTTC
1 TTTTGTTTTTC
*
36999863 TTTTCTTTTTC
1 TTTTGTTTTTC
*
36999874 TTCTGTT
1 TTTTGTT
36999881 GGGGAAATGA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
10 10 0.40
11 15 0.60
ACGTcount: A:0.00, C:0.13, G:0.05, T:0.82
Consensus pattern (11 bp):
TTTTGTTTTTC
Found at i:37009723 original size:41 final size:40
Alignment explanation
Indices: 37009646--37009732 Score: 111
Period size: 41 Copynumber: 2.1 Consensus size: 40
37009636 TCAAATACAT
37009646 TTAAAACAAATATTAAAATAAGAAACAAATAAAAAATTATA
1 TTAAAACAAATATTAAAATAAGAAACAAATAAAAAA-TATA
* * * **
37009687 TTAAAACAATTATTAAAATAATACACAAATTGAAAATATA
1 TTAAAACAAATATTAAAATAAGAAACAAATAAAAAATATA
*
37009727 ATAAAA
1 TTAAAA
37009733 AGTGATTATA
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
40 9 0.22
41 31 0.77
ACGTcount: A:0.66, C:0.06, G:0.02, T:0.26
Consensus pattern (40 bp):
TTAAAACAAATATTAAAATAAGAAACAAATAAAAAATATA
Found at i:37009793 original size:24 final size:23
Alignment explanation
Indices: 37009748--37009793 Score: 65
Period size: 24 Copynumber: 2.0 Consensus size: 23
37009738 TTATATTAAA
*
37009748 ATTAAAAATAAAATGTAAATATG
1 ATTAAAAATAAAATATAAATATG
*
37009771 ATTAAAAATAAAAATATATATAT
1 ATTAAAAAT-AAAATATAAATAT
37009794 ATTTAGTAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 9 0.45
24 11 0.55
ACGTcount: A:0.63, C:0.00, G:0.04, T:0.33
Consensus pattern (23 bp):
ATTAAAAATAAAATATAAATATG
Found at i:37021610 original size:24 final size:24
Alignment explanation
Indices: 37021577--37021623 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
37021567 CATAGAGAAT
* *
37021577 TTTGTGTTTACGTTTTGAGGGTTC
1 TTTGTGTTTAAGTTTTCAGGGTTC
*
37021601 TTTGTTTTTAAGTTTTCAGGGTT
1 TTTGTGTTTAAGTTTTCAGGGTT
37021624 TAGTTTTATT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.11, C:0.06, G:0.26, T:0.57
Consensus pattern (24 bp):
TTTGTGTTTAAGTTTTCAGGGTTC
Found at i:37023405 original size:6 final size:6
Alignment explanation
Indices: 37023397--37023443 Score: 58
Period size: 6 Copynumber: 7.8 Consensus size: 6
37023387 TTCTCCTCCA
* * * *
37023397 CCACCA CCACCT CCACCT CCACCT CCACCT CTACCT CTACCG CCACC
1 CCACCT CCACCT CCACCT CCACCT CCACCT CCACCT CCACCT CCACC
37023444 ACTTCCGTAT
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
6 37 1.00
ACGTcount: A:0.19, C:0.64, G:0.02, T:0.15
Consensus pattern (6 bp):
CCACCT
Found at i:37023589 original size:12 final size:12
Alignment explanation
Indices: 37023558--37023599 Score: 57
Period size: 12 Copynumber: 3.5 Consensus size: 12
37023548 CTACACCATT
*
37023558 CCCATACCCAGA
1 CCCATATCCAGA
* *
37023570 CCCGTATCCGGA
1 CCCATATCCAGA
37023582 CCCATATCCAGA
1 CCCATATCCAGA
37023594 CCCATA
1 CCCATA
37023600 CCCTTGGCCT
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
12 25 1.00
ACGTcount: A:0.29, C:0.45, G:0.12, T:0.14
Consensus pattern (12 bp):
CCCATATCCAGA
Found at i:37023743 original size:24 final size:24
Alignment explanation
Indices: 37023699--37023745 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
37023689 CGGAACCCCT
**
37023699 TCCAGAACCATACCCTGAACCATA
1 TCCAGAACCATACCCCAAACCATA
37023723 TCCAGAACC-TGACCCCAAACCAT
1 TCCAGAACCAT-ACCCCAAACCAT
37023746 TAGCACCACC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 1 0.05
24 19 0.95
ACGTcount: A:0.36, C:0.40, G:0.09, T:0.15
Consensus pattern (24 bp):
TCCAGAACCATACCCCAAACCATA
Found at i:37023804 original size:21 final size:21
Alignment explanation
Indices: 37023749--37023798 Score: 64
Period size: 21 Copynumber: 2.4 Consensus size: 21
37023739 AAACCATTAG
* *
37023749 CACCACCTCCACCTCCACCAC
1 CACCTCCTCCTCCTCCACCAC
**
37023770 TTCCTCCTCCTCCTCCACCAC
1 CACCTCCTCCTCCTCCACCAC
37023791 CACCTCCT
1 CACCTCCT
37023799 TTTCCTACAC
Statistics
Matches: 23, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.16, C:0.64, G:0.00, T:0.20
Consensus pattern (21 bp):
CACCTCCTCCTCCTCCACCAC
Found at i:37026581 original size:18 final size:18
Alignment explanation
Indices: 37026560--37026594 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
37026550 ATATATATCT
37026560 TAAAATATGGTAATGGGC
1 TAAAATATGGTAATGGGC
37026578 TAAAATATGGTAATGGG
1 TAAAATATGGTAATGGG
37026595 ATTGTTTCTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.40, C:0.03, G:0.29, T:0.29
Consensus pattern (18 bp):
TAAAATATGGTAATGGGC
Found at i:37029634 original size:28 final size:30
Alignment explanation
Indices: 37029574--37029635 Score: 71
Period size: 27 Copynumber: 2.2 Consensus size: 30
37029564 TTATGTCAAA
**
37029574 AATC-TTTCAAAAAAAAAACATTTCAAACC
1 AATCATTTCAAAAAAAAAACATTAAAAACC
37029603 --TCATTT-AAAAAAAAAAC-TTAAAAACC
1 AATCATTTCAAAAAAAAAACATTAAAAACC
37029629 AATCATT
1 AATCATT
37029636 CTTTTCTCTC
Statistics
Matches: 28, Mismatches: 2, Indels: 7
0.76 0.05 0.19
Matches are distributed among these distances:
26 7 0.25
27 13 0.46
28 8 0.29
ACGTcount: A:0.56, C:0.18, G:0.00, T:0.26
Consensus pattern (30 bp):
AATCATTTCAAAAAAAAAACATTAAAAACC
Found at i:37030023 original size:16 final size:16
Alignment explanation
Indices: 37029998--37030030 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
37029988 TTTATTTACT
37029998 TCAGAAAAAAATAAAA
1 TCAGAAAAAAATAAAA
*
37030014 TCAGATAAAAATAAAA
1 TCAGAAAAAAATAAAA
37030030 T
1 T
37030031 TTCTACCTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.70, C:0.06, G:0.06, T:0.18
Consensus pattern (16 bp):
TCAGAAAAAAATAAAA
Found at i:37031016 original size:45 final size:45
Alignment explanation
Indices: 37030954--37031253 Score: 207
Period size: 44 Copynumber: 6.7 Consensus size: 45
37030944 TTGTGGCATA
*
37030954 AATCTACT-CTACTGCAACTTCAGAGAGATAAGATTTGCTATCTTT
1 AATCTACTCCT-CTGCAACTTCAGAGAGATAAGATTTGCTAACTTT
* * *
37030999 GATCTACTCGTCTGCAACTTCAGAGAGATAAGATCTG-TAACTTT
1 AATCTACTCCTCTGCAACTTCAGAGAGATAAGATTTGCTAACTTT
* * * * * * * *
37031043 AATTTTCTCCACTGTAACTTCAGGGAGATAAGGTTT-ATAGCTTT
1 AATCTACTCCTCTGCAACTTCAGAGAGATAAGATTTGCTAACTTT
* * * * *
37031087 AATCTGC-CCTACTGCAAATTTAGAAAGATAAGATTTGCTAACTTC
1 AATCTACTCCT-CTGCAACTTCAGAGAGATAAGATTTGCTAACTTT
* * * * * **
37031132 AATCTGCTCCACTACAACTTCAGGGAGATAAGACTTG-TGGCTTT
1 AATCTACTCCTCTGCAACTTCAGAGAGATAAGATTTGCTAACTTT
** * * * * * * *
37031176 AATCTGTTCCACTGCAACTTCAGGGAAATGAGATTCGCTATCTTC
1 AATCTACTCCTCTGCAACTTCAGAGAGATAAGATTTGCTAACTTT
* * *
37031221 AGTCTGCTCCACTGCAACTTCAG-GAAGATAAGA
1 AATCTACTCCTCTGCAACTTCAGAG-AGATAAGA
37031254 CTTGTGGCTT
Statistics
Matches: 199, Mismatches: 49, Indels: 14
0.76 0.19 0.05
Matches are distributed among these distances:
43 2 0.01
44 99 0.50
45 95 0.48
46 3 0.02
ACGTcount: A:0.30, C:0.21, G:0.17, T:0.32
Consensus pattern (45 bp):
AATCTACTCCTCTGCAACTTCAGAGAGATAAGATTTGCTAACTTT
Found at i:37031150 original size:133 final size:133
Alignment explanation
Indices: 37030907--37031210 Score: 333
Period size: 133 Copynumber: 2.3 Consensus size: 133
37030897 AATTTGTAGT
* * * * * * *
37030907 TTTAATCTGTTCCACTATAACTTTAGGGATATAAGATTTGTGGCATAAATCTACTCTACTGCAAC
1 TTTAATCTGTTCCACTGTAACTTCAGGGAGATAAGATTTATAGCATAAATCTACCCTACTGCAAA
* * ** ** *
37030972 TTCAGAGAGATAAGATTTGCTATCTTTGATCTACTCGTCTGCAACTTCAGAGAGATAAGA-TCTG
66 TTCAGAAAGATAAGATTTGCTAACTTCAATCTACTCCACTACAACTTCAGAGAGATAAGACT-TG
37031036 TAAC
130 TAAC
* * * * *
37031040 TTTAAT-TTTCTCCACTGTAACTTCAGGGAGATAAGGTTTATAGCTTTAATCTGCCCTACTGCAA
1 TTTAATCTGT-TCCACTGTAACTTCAGGGAGATAAGATTTATAGCATAAATCTACCCTACTGCAA
* * *
37031104 ATTTAGAAAGATAAGATTTGCTAACTTCAATCTGCTCCACTACAACTTCAGGGAGATAAGACTTG
65 ATTCAGAAAGATAAGATTTGCTAACTTCAATCTACTCCACTACAACTTCAGAGAGATAAGACTTG
**
37031169 TGGC
130 TAAC
* * *
37031173 TTTAATCTGTTCCACTGCAACTTCAGGGAAATGAGATT
1 TTTAATCTGTTCCACTGTAACTTCAGGGAGATAAGATT
37031211 CGCTATCTTC
Statistics
Matches: 139, Mismatches: 29, Indels: 6
0.80 0.17 0.03
Matches are distributed among these distances:
132 2 0.01
133 134 0.96
134 3 0.02
ACGTcount: A:0.30, C:0.19, G:0.17, T:0.34
Consensus pattern (133 bp):
TTTAATCTGTTCCACTGTAACTTCAGGGAGATAAGATTTATAGCATAAATCTACCCTACTGCAAA
TTCAGAAAGATAAGATTTGCTAACTTCAATCTACTCCACTACAACTTCAGAGAGATAAGACTTGT
AAC
Found at i:37031300 original size:89 final size:89
Alignment explanation
Indices: 37030954--37031301 Score: 337
Period size: 89 Copynumber: 3.9 Consensus size: 89
37030944 TTGTGGCATA
* * * * ** * *
37030954 AATCTACTCTACTGCAACTTCAGAGAGATAAGATTTGCTATCTTTGATCTACTCGT-CTGCAACT
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGACTTG-TGGCTTTAATCTGCTC-TACTGCAACT
* *
37031018 TC-AGAGAGATAAGA-TCTG-TAACTTT
64 TCAAG-GAAATAAGATTC-GCTAACTTC
* * * ** * * * *
37031043 AATTTTCTCCACTGTAACTTCAGGGAGATAAGGTTTATAGCTTTAATCTGCCCTACTGCAAATT-
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTGGCTTTAATCTGCTCTACTGCAACTTC
* * *
37031107 TAGAAAGATAAGATTTGCTAACTTC
66 AAGGAA-ATAAGATTCGCTAACTTC
* * *
37031132 AATCTGCTCCACTACAACTTCAGGGAGATAAGACTTGTGGCTTTAATCTGTTCCACTGCAACTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTGGCTTTAATCTGCTCTACTGCAACTTC
* * *
37031197 AGGGAAATGAGATTCGCTATCTTC
66 AAGGAAATAAGATTCGCTAACTTC
* * *
37031221 AGTCTGCTCCACTGCAACTTCAGGAAGATAAGACTTGTGGCTTTAATCTGCTCTACTGTAACTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTGGCTTTAATCTGCTCTACTGCAACTTC
37031286 AAGGAAATAAGATTCG
66 AAGGAAATAAGATTCG
37031302 TTACGATGAC
Statistics
Matches: 211, Mismatches: 42, Indels: 12
0.80 0.16 0.05
Matches are distributed among these distances:
87 2 0.01
88 29 0.14
89 177 0.84
90 3 0.01
ACGTcount: A:0.30, C:0.21, G:0.18, T:0.32
Consensus pattern (89 bp):
AATCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTGGCTTTAATCTGCTCTACTGCAACTTC
AAGGAAATAAGATTCGCTAACTTC
Found at i:37043095 original size:17 final size:17
Alignment explanation
Indices: 37043073--37043105 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
37043063 GTGATATTAA
*
37043073 TAATAAAATAAATAAAG
1 TAATAAAAGAAATAAAG
37043090 TAATAAAAGAAATAAA
1 TAATAAAAGAAATAAA
37043106 ATGCGAGATA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.73, C:0.00, G:0.06, T:0.21
Consensus pattern (17 bp):
TAATAAAAGAAATAAAG
Found at i:37043821 original size:14 final size:14
Alignment explanation
Indices: 37043802--37043829 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
37043792 TATTTAAGTC
37043802 AAAAAAATTTCAAA
1 AAAAAAATTTCAAA
37043816 AAAAAAATTTCAAA
1 AAAAAAATTTCAAA
37043830 CCTCATTTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.71, C:0.07, G:0.00, T:0.21
Consensus pattern (14 bp):
AAAAAAATTTCAAA
Found at i:37046445 original size:21 final size:21
Alignment explanation
Indices: 37046421--37046488 Score: 99
Period size: 21 Copynumber: 3.4 Consensus size: 21
37046411 TTTTTATGAT
37046421 TTTTTATAAAATTTTAATATG
1 TTTTTATAAAATTTTAATATG
37046442 TTTTTATAAAATTTTAATATG
1 TTTTTATAAAATTTTAATATG
*
37046463 -TTTTAT-TAATTTT-ATAT-
1 TTTTTATAAAATTTTAATATG
37046480 TTTTTATAA
1 TTTTTATAA
37046489 CTTATTAGAT
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
18 10 0.23
19 6 0.14
20 6 0.14
21 21 0.49
ACGTcount: A:0.35, C:0.00, G:0.03, T:0.62
Consensus pattern (21 bp):
TTTTTATAAAATTTTAATATG
Found at i:37046583 original size:9 final size:9
Alignment explanation
Indices: 37046383--37046617 Score: 51
Period size: 10 Copynumber: 25.0 Consensus size: 9
37046373 TTTTTTTAAC
37046383 AATTTTATATT
1 AATTTT-TA-T
*
37046394 AATTTTAAT
1 AATTTTTAT
37046403 -ATTTTTAT
1 AATTTTTAT
37046411 --TTTTTAT
1 AATTTTTAT
*
37046418 GATTTTTTAT
1 -AATTTTTAT
*
37046428 AAAATTTTAAT
1 --AATTTTTAT
*
37046439 ATGTTTTTAT
1 A-ATTTTTAT
*
37046449 AAAATTTTA-
1 -AATTTTTAT
37046458 ATATGTTTTATT
1 A-AT-TTTTA-T
37046470 AA-TTTTAT
1 AATTTTTAT
*
37046478 ATTTTTTAT
1 AATTTTTAT
*
37046487 AACTTATTA-
1 AA-TTTTTAT
*
37046496 GATTTATTAT
1 AATTT-TTAT
37046506 -ATTTTTAT
1 AATTTTTAT
* **
37046514 AAGGTCATAT
1 AA-TTTTTAT
*
37046524 CAATTTTCAT
1 -AATTTTTAT
37046534 -ATTTTT-T
1 AATTTTTAT
*
37046541 AATATTTAAT
1 AAT-TTTTAT
*
37046551 AA-ATTTAT
1 AATTTTTAT
*
37046559 -ATTTTGAT
1 AATTTTTAT
37046567 AATTTTTTAT
1 AA-TTTTTAT
37046577 AATTTTTTTGAT
1 AA--TTTTT-AT
*
37046589 AATTTTTCT
1 AATTTTTAT
37046598 AAATTTTTAAT
1 -AATTTTT-AT
*
37046609 CATTTTTAT
1 AATTTTTAT
37046618 GGAAAATATT
Statistics
Matches: 165, Mismatches: 32, Indels: 56
0.65 0.13 0.22
Matches are distributed among these distances:
7 9 0.05
8 31 0.19
9 31 0.19
10 65 0.39
11 24 0.15
12 5 0.03
ACGTcount: A:0.33, C:0.03, G:0.03, T:0.61
Consensus pattern (9 bp):
AATTTTTAT
Found at i:37046588 original size:22 final size:22
Alignment explanation
Indices: 37046560--37046605 Score: 76
Period size: 22 Copynumber: 2.1 Consensus size: 22
37046550 TAAATTTATA
37046560 TTTTGATAATTTTT-TATAATTT
1 TTTTGATAATTTTTCTA-AATTT
37046582 TTTTGATAATTTTTCTAAATTT
1 TTTTGATAATTTTTCTAAATTT
37046604 TT
1 TT
37046606 AATCATTTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
22 21 0.91
23 2 0.09
ACGTcount: A:0.26, C:0.02, G:0.04, T:0.67
Consensus pattern (22 bp):
TTTTGATAATTTTTCTAAATTT
Found at i:37046590 original size:12 final size:12
Alignment explanation
Indices: 37046560--37046595 Score: 58
Period size: 11 Copynumber: 3.2 Consensus size: 12
37046550 TAAATTTATA
37046560 TTTTGATAA-TT
1 TTTTGATAATTT
37046571 TTTT-ATAATTT
1 TTTTGATAATTT
37046582 TTTTGATAATTT
1 TTTTGATAATTT
37046594 TT
1 TT
37046596 CTAAATTTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 4 0.17
11 10 0.43
12 9 0.39
ACGTcount: A:0.25, C:0.00, G:0.06, T:0.69
Consensus pattern (12 bp):
TTTTGATAATTT
Found at i:37055897 original size:15 final size:14
Alignment explanation
Indices: 37055841--37055957 Score: 62
Period size: 15 Copynumber: 8.1 Consensus size: 14
37055831 TTATTATGTT
*
37055841 TCTATTTATATTTA
1 TCTATTTTTATTTA
*
37055855 T-T-TTGTTATTCTAA
1 TCTATTTTTATT-T-A
*
37055869 TACTATTATTATTTA
1 T-CTATTTTTATTTA
37055884 TCTAATTTTTATTTA
1 TCT-ATTTTTATTTA
* *
37055899 TCTATTTATATTTC
1 TCTATTTTTATTTA
*
37055913 TACTATTATTATATT-
1 T-CTATTTTTAT-TTA
37055928 TCTATTTATTATATT-
1 TCTATTT-TTAT-TTA
* *
37055943 TTTATTTCTATTTA
1 TCTATTTTTATTTA
37055957 T
1 T
37055958 ATACTAATAT
Statistics
Matches: 82, Mismatches: 11, Indels: 20
0.73 0.10 0.18
Matches are distributed among these distances:
12 6 0.07
13 4 0.05
14 24 0.29
15 37 0.45
16 4 0.05
17 7 0.09
ACGTcount: A:0.26, C:0.08, G:0.01, T:0.65
Consensus pattern (14 bp):
TCTATTTTTATTTA
Found at i:37055910 original size:29 final size:28
Alignment explanation
Indices: 37055829--37055936 Score: 82
Period size: 29 Copynumber: 3.8 Consensus size: 28
37055819 TTATCGCTAT
37055829 TATTATTATGTT-TCTATTTATATTTAT-
1 TATTATTAT-TTATCTATTTATATTTATC
*
37055856 T-TTGTTATTCTAATACTA-TTATTATTTATC
1 TATTATTATT-T-AT-CTATTTA-TATTTATC
* *
37055886 TAATTTTTATTTATCTATTTATATTTCTAC
1 T-ATTATTATTTATCTATTTATATTTAT-C
37055916 TATTATTATATT-TCTATTTAT
1 TATTATTAT-TTATCTATTTAT
37055937 TATATTTTTA
Statistics
Matches: 66, Mismatches: 4, Indels: 20
0.73 0.04 0.22
Matches are distributed among these distances:
25 1 0.02
26 7 0.11
27 1 0.02
28 4 0.06
29 35 0.53
30 10 0.15
31 1 0.02
32 7 0.11
ACGTcount: A:0.27, C:0.07, G:0.02, T:0.64
Consensus pattern (28 bp):
TATTATTATTTATCTATTTATATTTATC
Found at i:37055926 original size:17 final size:15
Alignment explanation
Indices: 37055904--37055949 Score: 65
Period size: 15 Copynumber: 2.9 Consensus size: 15
37055894 ATTTATCTAT
37055904 TTATATTTCTACTATTA
1 TTATATTTCTA-T-TTA
37055921 TTATATTTCTATTTA
1 TTATATTTCTATTTA
*
37055936 TTATATTTTTATTT
1 TTATATTTCTATTT
37055950 CTATTTATAT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
15 16 0.57
16 1 0.04
17 11 0.39
ACGTcount: A:0.26, C:0.07, G:0.00, T:0.67
Consensus pattern (15 bp):
TTATATTTCTATTTA
Found at i:37055993 original size:52 final size:54
Alignment explanation
Indices: 37055872--37055993 Score: 125
Period size: 52 Copynumber: 2.4 Consensus size: 54
37055862 ATTCTAATAC
* * *
37055872 TATTATTATTTATC-TA-ATTTTTATTTATCTATTTATATTTCTACTATTATTA
1 TATTATTATTTTTCTTATATTTTTATTTATCTATTTATATTACTAATATTATTA
* *
37055924 TATT-TCTA--TTTATTATATTTTTA-TT-TCTATTTATA-TACTAATATTATTT
1 TATTAT-TATTTTTCTTATATTTTTATTTATCTATTTATATTACTAATATTATTA
37055973 TCATTATTATTTTTCTTATAT
1 T-ATTATTATTTTTCTTATAT
37055994 ATGTTTTTTA
Statistics
Matches: 57, Mismatches: 6, Indels: 14
0.74 0.08 0.18
Matches are distributed among these distances:
49 12 0.21
50 17 0.30
51 6 0.11
52 22 0.39
ACGTcount: A:0.28, C:0.07, G:0.00, T:0.65
Consensus pattern (54 bp):
TATTATTATTTTTCTTATATTTTTATTTATCTATTTATATTACTAATATTATTA
Found at i:37056558 original size:126 final size:126
Alignment explanation
Indices: 37056320--37056558 Score: 336
Period size: 126 Copynumber: 1.9 Consensus size: 126
37056310 GTTCGAGGAA
* * * * *
37056320 TCGTGCCCTATCGTGCTGGGTTTCGATTTTTCTTCAACTAAAATACGGAATATCCTTTTGAAATT
1 TCGTGCCCAATCGTGCTGGGCTTCGATTTTCCTTCAACTAAAATACAGAACATCCTTTTGAAATT
* * *
37056385 TCATCCATGTTTTTTTAAAATTAAAACGAGGCAATATTTTGTGTTTGGGGGGTTTGGGAGG
66 TCATCCATGTTTTTCTAAAATTAAAACGAGGCAATATTTCGTATTTGGGGGGTTTGGGAGG
* * *
37056446 TCGTGCCCAATCTTGTTGGGCTTCGATTTTCCATTCGACTAAAATACAGAACATCCTTTTGAAAT
1 TCGTGCCCAATCGTGCTGGGCTTCGATTTTCC-TTCAACTAAAATACAGAACATCCTTTTGAAAT
* * *
37056511 TTCATCCATG-TTTTCTCAAATTAAAATGAGGCAATGTTTCGTATTTGG
65 TTCATCCATGTTTTTCTAAAATTAAAACGAGGCAATATTTCGTATTTGG
37056559 AAATTCGATA
Statistics
Matches: 98, Mismatches: 14, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
126 59 0.60
127 39 0.40
ACGTcount: A:0.25, C:0.17, G:0.19, T:0.39
Consensus pattern (126 bp):
TCGTGCCCAATCGTGCTGGGCTTCGATTTTCCTTCAACTAAAATACAGAACATCCTTTTGAAATT
TCATCCATGTTTTTCTAAAATTAAAACGAGGCAATATTTCGTATTTGGGGGGTTTGGGAGG
Found at i:37058084 original size:19 final size:18
Alignment explanation
Indices: 37058062--37058107 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 18
37058052 ATTTCTTTCT
*
37058062 TTTGCATTCATTTCATGCA
1 TTTGCATTCATTGCAT-CA
*
37058081 TTTGCATAGCATTGCATCA
1 TTTGCAT-TCATTGCATCA
37058100 TTTGCATT
1 TTTGCATT
37058108 AGATTTTCAC
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
19 16 0.70
20 7 0.30
ACGTcount: A:0.22, C:0.20, G:0.13, T:0.46
Consensus pattern (18 bp):
TTTGCATTCATTGCATCA
Found at i:37058106 original size:9 final size:10
Alignment explanation
Indices: 37058062--37058106 Score: 51
Period size: 9 Copynumber: 4.7 Consensus size: 10
37058052 ATTTCTTTCT
*
37058062 TTTGCATTCA
1 TTTGCATGCA
37058072 TTT-CATGCA
1 TTTGCATGCA
37058081 TTTGCATAGCA
1 TTTGCAT-GCA
37058092 -TTGCAT-CA
1 TTTGCATGCA
37058100 TTTGCAT
1 TTTGCAT
37058107 TAGATTTTCA
Statistics
Matches: 31, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
8 2 0.06
9 14 0.45
10 12 0.39
11 3 0.10
ACGTcount: A:0.22, C:0.20, G:0.13, T:0.44
Consensus pattern (10 bp):
TTTGCATGCA
Found at i:37060535 original size:26 final size:25
Alignment explanation
Indices: 37060506--37060563 Score: 64
Period size: 25 Copynumber: 2.3 Consensus size: 25
37060496 CCTAATACAG
*
37060506 CAAAAGAGGCCAAA-AAGAAAAAAAAA
1 CAAAAAAGG-CAAAGAA-AAAAAAAAA
* *
37060532 CAAAAAAGGGAAAGAAAAAACAAAA
1 CAAAAAAGGCAAAGAAAAAAAAAAA
37060557 CAAAAAA
1 CAAAAAA
37060564 CAACAAAAAG
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
25 18 0.64
26 10 0.36
ACGTcount: A:0.76, C:0.10, G:0.14, T:0.00
Consensus pattern (25 bp):
CAAAAAAGGCAAAGAAAAAAAAAAA
Found at i:37062627 original size:45 final size:45
Alignment explanation
Indices: 37062578--37063055 Score: 194
Period size: 45 Copynumber: 10.7 Consensus size: 45
37062568 AAGTTACAGA
*
37062578 TCTTATCTCCATGTATCGACTATGGAGCAGATCAGAAATAGCGAG
1 TCTTATCTCCATGTATCGGCTATGGAGCAGATCAGAAATAGCGAG
* * * **
37062623 TCTTATCTCCATGTATTGGCTATGGAGTAGATTTTAGCCATA---AG
1 TCTTATCTCCATGTATCGGCTATGGAGCAGA--TCAGAAATAGCGAG
* * * *
37062667 TCTTATCTTCC-TG-A--AGTTACAGGAAGCAGA-CTGAAAAGTTATG-GA-
1 TCTTATC-TCCATGTATCGGCTA-TGG-AGCAGATCAG-AAA--TA-GCGAG
*
37062712 TCTTATCTCCATGTATCGGCTATGGAGCAGATCAGAAATGGCGAG
1 TCTTATCTCCATGTATCGGCTATGGAGCAGATCAGAAATAGCGAG
* *** *** *
37062757 TCTTATCTCCATGTATCGGTTATGGAGCAGATTTTAGCCA-CAAG
1 TCTTATCTCCATGTATCGGCTATGGAGCAGATCAGAAATAGCGAG
* * * * **
37062801 TCTTATCTTCCTAAAGT-T--GC-AAGAAGCAGA-CTGAAA-AGTTATAG
1 TCTTATC-TCC--ATGTATCGGCTATGGAGCAGATCAGAAATAG--CGAG
* * *
37062845 ATCTTATCTCCATGTATCAGCTATAGAGCAGATCAGAAATGGCGAG
1 -TCTTATCTCCATGTATCGGCTATGGAGCAGATCAGAAATAGCGAG
* * * *** *** *
37062891 TCATATCTCCATGTATCGGTTATAGAGCAGATTTTAGCCA-CTAG
1 TCTTATCTCCATGTATCGGCTATGGAGCAGATCAGAAATAGCGAG
* * * * *
37062935 TCTTATCTTCTTGAAGT-TGC-A-GGAAGCAGA-CTAAAAATTA-C-AG
1 TCTTATCTCCATGTA-TCGGCTATGG-AGCAGATC-AGAAA-TAGCGAG
* *
37062978 ATCTTATCTCCATGTATCGGCTATCGAGCAGATCAGAAATGGCGAG
1 -TCTTATCTCCATGTATCGGCTATGGAGCAGATCAGAAATAGCGAG
*
37063024 TCTTATCTCCATGTATCGACTATGGAGCAGAT
1 TCTTATCTCCATGTATCGGCTATGGAGCAGAT
37063056 TTTAGCCACC
Statistics
Matches: 312, Mismatches: 79, Indels: 84
0.66 0.17 0.18
Matches are distributed among these distances:
40 1 0.00
41 5 0.02
42 8 0.03
43 29 0.09
44 65 0.21
45 157 0.50
46 25 0.08
47 18 0.06
48 4 0.01
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.30
Consensus pattern (45 bp):
TCTTATCTCCATGTATCGGCTATGGAGCAGATCAGAAATAGCGAG
Found at i:37062768 original size:134 final size:133
Alignment explanation
Indices: 37062490--37063081 Score: 891
Period size: 134 Copynumber: 4.4 Consensus size: 133
37062480 AAATTATAGA
* *
37062490 TCTTATCTTCATGTATCGACTATGGAGCAGATTTTAGCCACTAGTCTTATCTTCCTGAAGTTGCA
1 TCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCA-TAGTCTTATCTTCCTGAAGTTGCA
* *
37062555 GGAAGCAGACTG-AAAGTTACAGATCTTATCTCCATGTATCGACTATGGAGCAGATCAGAAATAG
65 GGAAGCAGACTGAAAAGTTACAGATCTTATCTCCATGTATCGGCTATGGAGCAGATCAGAAATGG
37062619 CGAG
130 CGAG
* * *
37062623 TCTTATCTCCATGTATTGGCTATGGAGTAGATTTTAGCCATAAGTCTTATCTTCCTGAAGTTACA
1 TCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCAT-AGTCTTATCTTCCTGAAGTTGCA
**
37062688 GGAAGCAGACTGAAAAGTTATGGATCTTATCTCCATGTATCGGCTATGGAGCAGATCAGAAATGG
65 GGAAGCAGACTGAAAAGTTACAGATCTTATCTCCATGTATCGGCTATGGAGCAGATCAGAAATGG
37062753 CGAG
130 CGAG
* * *
37062757 TCTTATCTCCATGTATCGGTTATGGAGCAGATTTTAGCCACAAGTCTTATCTTCCTAAAGTTGCA
1 TCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCA-TAGTCTTATCTTCCTGAAGTTGCA
* * * *
37062822 AGAAGCAGACTGAAAAGTTATAGATCTTATCTCCATGTATCAGCTATAGAGCAGATCAGAAATGG
65 GGAAGCAGACTGAAAAGTTACAGATCTTATCTCCATGTATCGGCTATGGAGCAGATCAGAAATGG
37062887 CGAG
130 CGAG
* * * *
37062891 TCATATCTCCATGTATCGGTTATAGAGCAGATTTTAGCCACTAGTCTTATCTTCTTGAAGTTGCA
1 TCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCA-TAGTCTTATCTTCCTGAAGTTGCA
* *
37062956 GGAAGCAGACT-AAAAATTACAGATCTTATCTCCATGTATCGGCTATCGAGCAGATCAGAAATGG
65 GGAAGCAGACTGAAAAGTTACAGATCTTATCTCCATGTATCGGCTATGGAGCAGATCAGAAATGG
37063020 CGAG
130 CGAG
* * * *
37063024 TCTTATCTCCATGTATCGACTATGGAGCAGATTTTAGCCACCAGCCTTATCTTTCTGA
1 TCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCA-TAGTCTTATCTTCCTGA
37063082 GGTAGCAAGA
Statistics
Matches: 419, Mismatches: 37, Indels: 6
0.91 0.08 0.01
Matches are distributed among these distances:
132 1 0.00
133 173 0.41
134 245 0.58
ACGTcount: A:0.29, C:0.19, G:0.21, T:0.31
Consensus pattern (133 bp):
TCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCATAGTCTTATCTTCCTGAAGTTGCAG
GAAGCAGACTGAAAAGTTACAGATCTTATCTCCATGTATCGGCTATGGAGCAGATCAGAAATGGC
GAG
Found at i:37062985 original size:267 final size:267
Alignment explanation
Indices: 37062490--37063076 Score: 928
Period size: 267 Copynumber: 2.2 Consensus size: 267
37062480 AAATTATAGA
* * *
37062490 TCTTATCTTCATGTATCGACTATGGAGCAGATTTTAGCCACTAGTCTTATCTTCCTGAAGTTGCA
1 TCTTATCTCCATGTATCGACTATGGAGCAGATTTTAGCCACAAGTCTTATCTTCCTAAAGTTGCA
* *
37062555 GGAAGCAGACTGAAAGTTACAGATCTTATCTCCATGTATCGACTATGGAGCAGATCAGAAATAGC
66 AGAAGCAGACTGAAAGTTACAGATCTTATCTCCATGTATCGACTATAGAGCAGATCAGAAATAGC
* * * *
37062620 GAGTCTTATCTCCATGTATTGGCTATGGAGTAGATTTTAGCCATAAGTCTTATCTTCCTGAAGTT
131 GAGTCATATCTCCATGTATCGGCTATAGAGCAGATTTTAGCCATAAGTCTTATCTTCCTGAAGTT
* ** *
37062685 ACAGGAAGCAGACTGAAAAGTTATGGATCTTATCTCCATGTATCGGCTATGGAGCAGATCAGAAA
196 ACAGGAAGCAGACTGAAAAATTACAGATCTTATCTCCATGTATCGGCTATCGAGCAGATCAGAAA
37062750 TGGCGAG
261 TGGCGAG
**
37062757 TCTTATCTCCATGTATCGGTTATGGAGCAGATTTTAGCCACAAGTCTTATCTTCCTAAAGTTGCA
1 TCTTATCTCCATGTATCGACTATGGAGCAGATTTTAGCCACAAGTCTTATCTTCCTAAAGTTGCA
* *
37062822 AGAAGCAGACTGAAAAGTTATAGATCTTATCTCCATGTATC-AGCTATAGAGCAGATCAGAAATG
66 AGAAGCAGACTG-AAAGTTACAGATCTTATCTCCATGTATCGA-CTATAGAGCAGATCAGAAATA
* *
37062886 GCGAGTCATATCTCCATGTATCGGTTATAGAGCAGATTTTAGCCACT-AGTCTTATCTTCTTGAA
129 GCGAGTCATATCTCCATGTATCGGCTATAGAGCAGATTTTAGCCA-TAAGTCTTATCTTCCTGAA
*
37062950 GTTGCAGGAAGCAGACT-AAAAATTACAGATCTTATCTCCATGTATCGGCTATCGAGCAGATCAG
193 GTTACAGGAAGCAGACTGAAAAATTACAGATCTTATCTCCATGTATCGGCTATCGAGCAGATCAG
37063014 AAATGGCGAG
258 AAATGGCGAG
* *
37063024 TCTTATCTCCATGTATCGACTATGGAGCAGATTTTAGCCACCAGCCTTATCTT
1 TCTTATCTCCATGTATCGACTATGGAGCAGATTTTAGCCACAAGTCTTATCTT
37063077 TCTGAGGTAG
Statistics
Matches: 293, Mismatches: 24, Indels: 6
0.91 0.07 0.02
Matches are distributed among these distances:
267 174 0.59
268 118 0.40
269 1 0.00
ACGTcount: A:0.29, C:0.19, G:0.21, T:0.31
Consensus pattern (267 bp):
TCTTATCTCCATGTATCGACTATGGAGCAGATTTTAGCCACAAGTCTTATCTTCCTAAAGTTGCA
AGAAGCAGACTGAAAGTTACAGATCTTATCTCCATGTATCGACTATAGAGCAGATCAGAAATAGC
GAGTCATATCTCCATGTATCGGCTATAGAGCAGATTTTAGCCATAAGTCTTATCTTCCTGAAGTT
ACAGGAAGCAGACTGAAAAATTACAGATCTTATCTCCATGTATCGGCTATCGAGCAGATCAGAAA
TGGCGAG
Found at i:37063116 original size:133 final size:133
Alignment explanation
Indices: 37062306--37063124 Score: 829
Period size: 133 Copynumber: 6.1 Consensus size: 133
37062296 CGGTAAAAAT
* *
37062306 TACAGATCTTATCTCTATGTATCGGCTATGGAGCAGATCAGAAATGGCGAGTCTTATCTTCATGT
1 TACAGATCTTATCTCCATGTATCGGCTATGGAGCAGATCAGAAATGGCGAGTCTTATCTCCATGT
* * * * * * * **
37062371 ATC-AGCTATAGAGTAGATTTAAGCCATC-GGCCTTATC-TCTCTGAGGCAGCAAGAGAGCAGGT
66 ATCGA-CTATGGAGCAGATTTTAGCCA-CAAGTCTTATCTTC-CTGAAGTAGCAAGA-AGCAGAC
37062433 TG-AAGA
127 TGAAAGA
* * * * * * * * * ***
37062439 TAC-GAGCCTTAACCCCCTAAGCAGTAGGGTAATAG-GCTGA--A-AAAT-TATAGATCTTATCT
1 TACAGA-TCTT-ATCTCC-ATGTA-TCGGCT-ATGGAGCAGATCAGAAATGGCGAG-TCTTATCT
* * * *
37062498 TCATGTATCGACTATGGAGCAGATTTTAGCCACTAGTCTTATCTTCCTGAAGTTGCAGGAAGCAG
60 CCATGTATCGACTATGGAGCAGATTTTAGCCACAAGTCTTATCTTCCTGAAGTAGCAAGAAGCAG
*
37062563 ACTGAAAGT
125 ACTGAAAGA
* *
37062572 TACAGATCTTATCTCCATGTATCGACTATGGAGCAGATCAGAAATAGCGAGTCTTATCTCCATGT
1 TACAGATCTTATCTCCATGTATCGGCTATGGAGCAGATCAGAAATGGCGAGTCTTATCTCCATGT
* * * * *
37062637 ATTGGCTATGGAGTAGATTTTAGCCATAAGTCTTATCTTCCTGAAGTTA-CAGGAAGCAGACTGA
66 ATCGACTATGGAGCAGATTTTAGCCACAAGTCTTATCTTCCTGAAG-TAGCAAGAAGCAGACTG-
*
37062701 AAAGT
129 AAAGA
**
37062706 TATGGATCTTATCTCCATGTATCGGCTATGGAGCAGATCAGAAATGGCGAGTCTTATCTCCATGT
1 TACAGATCTTATCTCCATGTATCGGCTATGGAGCAGATCAGAAATGGCGAGTCTTATCTCCATGT
** * *
37062771 ATCGGTTATGGAGCAGATTTTAGCCACAAGTCTTATCTTCCTAAAGTTGCAAGAAGCAGACTGAA
66 ATCGACTATGGAGCAGATTTTAGCCACAAGTCTTATCTTCCTGAAGTAGCAAGAAGCAGACTG-A
*
37062836 AAGT
130 AAGA
* * * *
37062840 TATAGATCTTATCTCCATGTATCAGCTATAGAGCAGATCAGAAATGGCGAGTCATATCTCCATGT
1 TACAGATCTTATCTCCATGTATCGGCTATGGAGCAGATCAGAAATGGCGAGTCTTATCTCCATGT
** * * * * *
37062905 ATCGGTTATAGAGCAGATTTTAGCCACTAGTCTTATCTTCTTGAAGTTGCAGGAAGCAGACT-AA
66 ATCGACTATGGAGCAGATTTTAGCCACAAGTCTTATCTTCCTGAAGTAGCAAGAAGCAGACTGAA
*
37062969 AAA
131 AGA
*
37062972 TTACAGATCTTATCTCCATGTATCGGCTATCGAGCAGATCAGAAATGGCGAGTCTTATCTCCATG
1 -TACAGATCTTATCTCCATGTATCGGCTATGGAGCAGATCAGAAATGGCGAGTCTTATCTCCATG
* * * * **
37063037 TATCGACTATGGAGCAGATTTTAGCCACCAGCCTTATCTTTCTGAGGTAGCAAGAGAGCAGGTTG
65 TATCGACTATGGAGCAGATTTTAGCCACAAGTCTTATCTTCCTGAAGTAGCAAGA-AGCAGACTG
37063102 -AAGA
129 AAAGA
*
37063106 TACA-AGTCTTATCTTCATG
1 TACAGA-TCTTATCTCCATG
37063125 AAGTTGCAAG
Statistics
Matches: 578, Mismatches: 85, Indels: 46
0.82 0.12 0.06
Matches are distributed among these distances:
129 3 0.01
130 7 0.01
131 3 0.01
132 21 0.04
133 265 0.46
134 265 0.46
135 3 0.01
136 8 0.01
137 3 0.01
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.30
Consensus pattern (133 bp):
TACAGATCTTATCTCCATGTATCGGCTATGGAGCAGATCAGAAATGGCGAGTCTTATCTCCATGT
ATCGACTATGGAGCAGATTTTAGCCACAAGTCTTATCTTCCTGAAGTAGCAAGAAGCAGACTGAA
AGA
Found at i:37063156 original size:178 final size:177
Alignment explanation
Indices: 37062933--37063259 Score: 503
Period size: 178 Copynumber: 1.8 Consensus size: 177
37062923 TTTAGCCACT
* * * * *
37062933 AGTCTTATCTTCTTGAAGTTGCAGGAAGCAGACTAAAAATTACAGATCTTATCTCCATGTATCGG
1 AGTCTTATCTTCATGAAGTTGCAAGAAGCAAAATAAAAATTACAGATCTTATCTCCATGTATCGA
*
37062998 CTATCGAGCAGATCAGAAATGGCGAGTCTTATCTCC-ATGTATCGACTATGGAGCAGATTTTAGC
66 CTATCGAGCAAATCAGAAATGGCGAGTCTTATCTCCAAT-TATCGACTATGGAGCAGATTTTAGC
37063062 CACCAGCCTTATCTTTCTGAGGTAGCAAGAGAGCAGGTTGAAGATACA
130 CACCAGCCTTATCTTTCTGAGGTAGCAAGAGAGCAGGTTGAAGATACA
* *
37063110 AGTCTTATCTTCATGAAGTTGCAAGAAGCAAAATGAAAATTTACAGATCTTATCTCCATGTATCT
1 AGTCTTATCTTCATGAAGTTGCAAGAAGCAAAAT-AAAAATTACAGATCTTATCTCCATGTATCG
* * * *
37063175 ACTATGGAGCAAATCAGAAATGGCGAGTCTTATCTCCAATTATTGGCTTTGGAGCAGATTTTAGC
65 ACTATCGAGCAAATCAGAAATGGCGAGTCTTATCTCCAATTATCGACTATGGAGCAGATTTTAGC
* *
37063240 CACTAGTCTTATCTTTCTGA
130 CACCAGCCTTATCTTTCTGA
37063260 AGTTGCAGGA
Statistics
Matches: 134, Mismatches: 14, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
177 30 0.22
178 102 0.76
179 2 0.01
ACGTcount: A:0.30, C:0.19, G:0.20, T:0.31
Consensus pattern (177 bp):
AGTCTTATCTTCATGAAGTTGCAAGAAGCAAAATAAAAATTACAGATCTTATCTCCATGTATCGA
CTATCGAGCAAATCAGAAATGGCGAGTCTTATCTCCAATTATCGACTATGGAGCAGATTTTAGCC
ACCAGCCTTATCTTTCTGAGGTAGCAAGAGAGCAGGTTGAAGATACA
Found at i:37063165 original size:311 final size:312
Alignment explanation
Indices: 37062796--37063366 Score: 927
Period size: 311 Copynumber: 1.8 Consensus size: 312
37062786 GATTTTAGCC
* * * *
37062796 ACAAGTCTTATCTTCCTAAAGTTGCAAGAAGCAGACTGAAAAGTTATAGATCTTATCTCCATGTA
1 ACAAGTCTTATCTTCATAAAGTTGCAAGAAGCAAAATGAAAAGTTACAGATCTTATCTCCATGTA
*
37062861 TC-AGCTATAGAGCAGATCAGAAATGGCGAGTCATATCTCC-ATGTATCGG-TTATAGAGCAGAT
66 TCTA-CTATAGAGCAAATCAGAAATGGCGAGTCATATCTCCAAT-TATCGGCTT-TAGAGCAGAT
37062923 TTTAGCCACTAGTCTTATC-TTCTTGAAGTTGCAGGAAGCAGACTAAAAA-TTACAGATCTTATC
128 TTTAGCCACTAGTCTTATCTTTC-TGAAGTTGCAGGAAGCAGACTAAAAAGTTACAGATCTTATC
37062986 TCCATGTATCGGCTATCGAGCAGATCAGAAATGGCGAGTCTTATCTCCATGTATCGACTATGGAG
192 TCCATGTATCGGCTATCGAGCAGATCAGAAATGGCGAGTCTTATCTCCATGTATCGACTATGGAG
37063051 CAGATTTTAGCCACCAGCCTTATCTTTCTGAGGTAGCAAGAGAGCAGGTTGAAGAT
257 CAGATTTTAGCCACCAGCCTTATCTTTCTGAGGTAGCAAGAGAGCAGGTTGAAGAT
* *
37063107 ACAAGTCTTATCTTCATGAAGTTGCAAGAAGCAAAATGAAAATTTACAGATCTTATCTCCATGTA
1 ACAAGTCTTATCTTCATAAAGTTGCAAGAAGCAAAATGAAAAGTTACAGATCTTATCTCCATGTA
* * * *
37063172 TCTACTATGGAGCAAATCAGAAATGGCGAGTCTTATCTCCAATTATTGGCTTTGGAGCAGATTTT
66 TCTACTATAGAGCAAATCAGAAATGGCGAGTCATATCTCCAATTATCGGCTTTAGAGCAGATTTT
37063237 AGCCACTAGTCTTATCTTTCTGAAGTTGCAGGAAGCAGACTAAAAAGTTACAGATCTTATCTCCA
131 AGCCACTAGTCTTATCTTTCTGAAGTTGCAGGAAGCAGACTAAAAAGTTACAGATCTTATCTCCA
* * * * *
37063302 TGTATCGGTTATGGAGTAGTTCAGAAATGGCGAGTCTTATCTCCATGTATCGGCTATGGAGCAGA
196 TGTATCGGCTATCGAGCAGATCAGAAATGGCGAGTCTTATCTCCATGTATCGACTATGGAGCAGA
37063367 CTGAGAAATA
Statistics
Matches: 239, Mismatches: 16, Indels: 9
0.91 0.06 0.03
Matches are distributed among these distances:
311 153 0.64
312 86 0.36
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.30
Consensus pattern (312 bp):
ACAAGTCTTATCTTCATAAAGTTGCAAGAAGCAAAATGAAAAGTTACAGATCTTATCTCCATGTA
TCTACTATAGAGCAAATCAGAAATGGCGAGTCATATCTCCAATTATCGGCTTTAGAGCAGATTTT
AGCCACTAGTCTTATCTTTCTGAAGTTGCAGGAAGCAGACTAAAAAGTTACAGATCTTATCTCCA
TGTATCGGCTATCGAGCAGATCAGAAATGGCGAGTCTTATCTCCATGTATCGACTATGGAGCAGA
TTTTAGCCACCAGCCTTATCTTTCTGAGGTAGCAAGAGAGCAGGTTGAAGAT
Found at i:37063263 original size:134 final size:134
Alignment explanation
Indices: 37063110--37063366 Score: 365
Period size: 134 Copynumber: 1.9 Consensus size: 134
37063100 TGAAGATACA
* * *
37063110 AGTCTTATCTTCATGAAGTTGCAAGAAGCAAAATGAAAATTTACAGATCTTATCTCCATGTATCT
1 AGTCTTATCTTCATGAAGTTGCAAGAAGCAAAATAAAAAGTTACAGATCTTATCTCCATGTATCG
* *
37063175 ACTATGGAGCAAATCAGAAATGGCGAGTCTTATCTCCAAT-TATTGGCTTTGGAGCAGATTTTAG
66 ACTATGGAGCAAATCAGAAATGGCGAGTCTTATCTCC-ATGTATCGGCTATGGAGCAGATTTTAG
37063239 CCACT
130 CCACT
* * *
37063244 AGTCTTATCTTTC-TGAAGTTGCAGGAAGCAGACTAAAAAGTTACAGATCTTATCTCCATGTATC
1 AGTCTTATC-TTCATGAAGTTGCAAGAAGCAAAATAAAAAGTTACAGATCTTATCTCCATGTATC
** * **
37063308 GGTTATGGAGTAGTTCAGAAATGGCGAGTCTTATCTCCATGTATCGGCTATGGAGCAGA
65 GACTATGGAGCAAATCAGAAATGGCGAGTCTTATCTCCATGTATCGGCTATGGAGCAGA
37063367 CTGAGAAATA
Statistics
Matches: 108, Mismatches: 13, Indels: 4
0.86 0.10 0.03
Matches are distributed among these distances:
133 2 0.02
134 103 0.95
135 3 0.03
ACGTcount: A:0.30, C:0.18, G:0.21, T:0.32
Consensus pattern (134 bp):
AGTCTTATCTTCATGAAGTTGCAAGAAGCAAAATAAAAAGTTACAGATCTTATCTCCATGTATCG
ACTATGGAGCAAATCAGAAATGGCGAGTCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGC
CACT
Found at i:37063476 original size:44 final size:43
Alignment explanation
Indices: 37063422--37063704 Score: 179
Period size: 44 Copynumber: 6.5 Consensus size: 43
37063412 GACAGCGAGC
* **
37063422 CTTAACTCCCTAAGCAGTAAAGTAACAAGCTGAAAATTACAGAT
1 CTTATCTCCCTAAGCAGTAGGGTAAC-AGCTGAAAATTACAGAT
* * * *
37063466 CTTATCTCCCTAAGCAGTAGTG-AAGCAGATCGAAGACAGTA-AG-C
1 CTTATCTCCCTAAGCAGTAGGGTAA-CAGCT-GAA-A-ATTACAGAT
*
37063510 CTTAAC-CCCTTAAGCAGTAGGGTAACAGACTGAAAATTACAGAT
1 CTTATCTCCC-TAAGCAGTAGGGTAACAG-CTGAAAATTACAGAT
* * * * * * *
37063554 CTTATTTCCTTAAGCAGTAGTGG-AGCAGATCGAAAACGGT-GAG-C
1 CTTATCTCCCTAAGCAGTAG-GGTAACAGCT-GAAAA--TTACAGAT
* * * *
37063598 CTTATC-CCCTTAAGCAGTGGGGAAACAAGCTG-AAATTATAAAT
1 CTTATCTCCC-TAAGCAGTAGGGTAAC-AGCTGAAAATTACAGAT
* * *
37063641 CTTACCTTCCTAAGCAGTAGGGAAACAAGCTGAAAATTACAGAT
1 CTTATCTCCCTAAGCAGTAGGGTAAC-AGCTGAAAATTACAGAT
37063685 CTTATCTCCCTAAGCAGTAG
1 CTTATCTCCCTAAGCAGTAG
37063705 CGGAGCAGAT
Statistics
Matches: 183, Mismatches: 35, Indels: 42
0.70 0.13 0.16
Matches are distributed among these distances:
41 1 0.01
42 4 0.02
43 45 0.25
44 114 0.62
45 15 0.08
46 4 0.02
ACGTcount: A:0.36, C:0.21, G:0.19, T:0.24
Consensus pattern (43 bp):
CTTATCTCCCTAAGCAGTAGGGTAACAGCTGAAAATTACAGAT
Found at i:37063498 original size:88 final size:88
Alignment explanation
Indices: 37063401--37063660 Score: 337
Period size: 88 Copynumber: 3.0 Consensus size: 88
37063391 ACAATAGTAG
* **
37063401 AGCAGATCGAAGACAGCGAGCCTTAACTCCC-TAAGCAGTAAAGTAACAAGCTGAAAATTACAGA
1 AGCAGATCGAAGACAGTGAGCCTTAAC-CCCTTAAGCAGTAGGGTAACAAGCTGAAAATTACAGA
37063465 TCTTATCTCCCTAAGCAGTAGTGA
65 TCTTATCTCCCTAAGCAGTAGTGA
*
37063489 AGCAGATCGAAGACAGTAAGCCTTAACCCCTTAAGCAGTAGGGTAAC-AGACTGAAAATTACAGA
1 AGCAGATCGAAGACAGTGAGCCTTAACCCCTTAAGCAGTAGGGTAACAAG-CTGAAAATTACAGA
* * *
37063553 TCTTATTTCCTTAAGCAGTAGTGG
65 TCTTATCTCCCTAAGCAGTAGTGA
* * * * * * *
37063577 AGCAGATCGAAAACGGTGAGCCTTATCCCCTTAAGCAGTGGGGAAACAAGCTG-AAATTATAAAT
1 AGCAGATCGAAGACAGTGAGCCTTAACCCCTTAAGCAGTAGGGTAACAAGCTGAAAATTACAGAT
* *
37063641 CTTACCTTCCTAAGCAGTAG
66 CTTATCTCCCTAAGCAGTAG
37063661 GGAAACAAGC
Statistics
Matches: 150, Mismatches: 19, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
87 30 0.20
88 118 0.79
89 2 0.01
ACGTcount: A:0.36, C:0.21, G:0.21, T:0.22
Consensus pattern (88 bp):
AGCAGATCGAAGACAGTGAGCCTTAACCCCTTAAGCAGTAGGGTAACAAGCTGAAAATTACAGAT
CTTATCTCCCTAAGCAGTAGTGA
Found at i:37063761 original size:131 final size:132
Alignment explanation
Indices: 37063520--37063823 Score: 348
Period size: 131 Copynumber: 2.3 Consensus size: 132
37063510 CTTAACCCCT
* * * *
37063520 TAAGCAGTAGGGTAACAGACTGAAAATTACAGATCTTATTTCCTTAAGCAGTAGTGGAGCAGATC
1 TAAGCAGTAGGGAAACAGACTGAAAATTACAGATCTTATCTCCCTAAGCAGTAGCGGAGCAGATC
* * * *
37063585 GAAAACGGTGAGCCTTATCCCCTTAAGCAGTGGGGAAACAAGCTG-AAATTATAAATCTTACCTT
66 GAAAACGATGAGCCTTATCCCCTTAAGCAATGGGGAAACAAGCTGAAAATTACAAATCTTACCTC
37063649 CC
131 CC
37063651 TAAGCAGTAGGGAAACA-AGCTGAAAATTACAGATCTTATCTCCCTAAGCAGTAGCGGAGCAGAT
1 TAAGCAGTAGGGAAACAGA-CTGAAAATTACAGATCTTATCTCCCTAAGCAGTAGCGGAGCAGAT
* * * * * ** * *
37063715 TGGAAACGATGAGCCTTATCTCCC-TGAGTAATAGTGG-AGTAGGCTGAAAATTACAAATGTTAC
65 CGAAAACGATGAGCCTTATC-CCCTTAAGCAAT-GGGGAAACAAGCTGAAAATTACAAATCTTAC
37063778 CTCCC
128 CTCCC
* * *
37063783 TAAGCAGTAGTGG-AGCAGACTGAAGATTAACAGATTTTATC
1 TAAGCAGTAG-GGAAACAGACTGAAAATT-ACAGATCTTATC
37063824 CTCTTTAAGT
Statistics
Matches: 146, Mismatches: 20, Indels: 12
0.82 0.11 0.07
Matches are distributed among these distances:
130 1 0.01
131 86 0.59
132 45 0.31
133 14 0.10
ACGTcount: A:0.35, C:0.18, G:0.22, T:0.25
Consensus pattern (132 bp):
TAAGCAGTAGGGAAACAGACTGAAAATTACAGATCTTATCTCCCTAAGCAGTAGCGGAGCAGATC
GAAAACGATGAGCCTTATCCCCTTAAGCAATGGGGAAACAAGCTGAAAATTACAAATCTTACCTC
CC
Found at i:37064855 original size:15 final size:14
Alignment explanation
Indices: 37064829--37064899 Score: 63
Period size: 15 Copynumber: 4.9 Consensus size: 14
37064819 TATTCTAATA
*
37064829 CTATTATTATTTAT
1 CTATTTTTATTTAT
37064843 CTAATTTTTATTTAT
1 CT-ATTTTTATTTAT
* *
37064858 CTATTTATATTTCT
1 CTATTTTTATTTAT
*
37064872 ACTATTATTATATT-T
1 -CTATTTTTAT-TTAT
37064887 CTATTTTTTATTT
1 CTA-TTTTTATTT
37064900 CTATTTATAT
Statistics
Matches: 47, Mismatches: 6, Indels: 8
0.77 0.10 0.13
Matches are distributed among these distances:
14 17 0.36
15 28 0.60
16 2 0.04
ACGTcount: A:0.25, C:0.08, G:0.00, T:0.66
Consensus pattern (14 bp):
CTATTTTTATTTAT
Found at i:37064868 original size:14 final size:15
Alignment explanation
Indices: 37064836--37064869 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
37064826 ATACTATTAT
*
37064836 TATTTATCTAATTTT
1 TATTTATCTAATTTA
37064851 TATTTATCT-ATTTA
1 TATTTATCTAATTTA
37064865 TATTT
1 TATTT
37064870 CTACTATTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 9 0.50
15 9 0.50
ACGTcount: A:0.26, C:0.06, G:0.00, T:0.68
Consensus pattern (15 bp):
TATTTATCTAATTTA
Found at i:37064895 original size:44 final size:42
Alignment explanation
Indices: 37064827--37064909 Score: 123
Period size: 44 Copynumber: 1.9 Consensus size: 42
37064817 GTTATTCTAA
37064827 TACTATTATTATTTATCTAATTTTTATTTATCTATTTATATTTC
1 TACTATTATTATTTATCTAATTTTTA-TT-TCTATTTATATTTC
*
37064871 TACTATTATTATATT-TCTATTTTTTATTTCTATTTATAT
1 TACTATTATTAT-TTATCTAATTTTTATTTCTATTTATAT
37064910 ACTAATATTA
Statistics
Matches: 37, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
42 11 0.30
43 2 0.05
44 22 0.59
45 2 0.05
ACGTcount: A:0.27, C:0.08, G:0.00, T:0.65
Consensus pattern (42 bp):
TACTATTATTATTTATCTAATTTTTATTTCTATTTATATTTC
Found at i:37064936 original size:42 final size:44
Alignment explanation
Indices: 37064830--37064921 Score: 120
Period size: 44 Copynumber: 2.2 Consensus size: 44
37064820 ATTCTAATAC
* * *
37064830 TATTATTAT-TTATCTAATTTTTATTTATCTATTTATATTTCTAC
1 TATTATTATATT-TCTATTTTTTATTTATCTATTTATATTACTAA
37064874 TATTATTATATTTCTATTTTTTA-TT-TCTATTTATA-TACTAA
1 TATTATTATATTTCTATTTTTTATTTATCTATTTATATTACTAA
37064915 TATTATT
1 TATTATT
37064922 TTCATTATTA
Statistics
Matches: 44, Mismatches: 3, Indels: 5
0.85 0.06 0.10
Matches are distributed among these distances:
41 11 0.25
42 10 0.23
43 2 0.05
44 19 0.43
45 2 0.05
ACGTcount: A:0.28, C:0.08, G:0.00, T:0.64
Consensus pattern (44 bp):
TATTATTATATTTCTATTTTTTATTTATCTATTTATATTACTAA
Found at i:37065442 original size:127 final size:126
Alignment explanation
Indices: 37065288--37065528 Score: 295
Period size: 127 Copynumber: 1.9 Consensus size: 126
37065278 GTTCGAAGAA
* * * * * ** * *
37065288 TCGTGCCCTATCATGCTAGGTTTCGATTTTTCGTTCAATTAAAAT-GTGAAATATCCTTTTGAGA
1 TCGTGCCCAATCATGCTAGGCTTCGATTTTCCATTCAACTAAAATACAG-AACATCCTTTTGAAA
* * *
37065352 TTTCATCCATGTTTTTTTAAAATTAAAACGAGGCAATATTTTGTGTTTGGAGGGTTTGGGAGG
65 TTTCATCCATG-TTTTCTAAAATTAAAACGAGGCAATATTTCGTATTTGGAGGGTTTGGGAGG
* * *
37065415 TCGTGCCCAATCGTGCTGGGCTTCGATTTTCCATTCGACTAAAATACAGAACATCCTTTTGAAAT
1 TCGTGCCCAATCATGCTAGGCTTCGATTTTCCATTCAACTAAAATACAGAACATCCTTTTGAAAT
* * *
37065480 TTCATCCATGTTTTCTCAAATTAAAATGAGGCAATGTTTCGTATTTGGA
66 TTCATCCATGTTTTCTAAAATTAAAACGAGGCAATATTTCGTATTTGGA
37065529 AATTCATAAA
Statistics
Matches: 95, Mismatches: 18, Indels: 3
0.82 0.16 0.03
Matches are distributed among these distances:
126 33 0.35
127 61 0.64
128 1 0.01
ACGTcount: A:0.26, C:0.16, G:0.19, T:0.39
Consensus pattern (126 bp):
TCGTGCCCAATCATGCTAGGCTTCGATTTTCCATTCAACTAAAATACAGAACATCCTTTTGAAAT
TTCATCCATGTTTTCTAAAATTAAAACGAGGCAATATTTCGTATTTGGAGGGTTTGGGAGG
Found at i:37069222 original size:16 final size:16
Alignment explanation
Indices: 37069201--37069232 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
37069191 ATGTTAACAA
37069201 GTAGATACTGTTAGCT
1 GTAGATACTGTTAGCT
*
37069217 GTAGATGCTGTTAGCT
1 GTAGATACTGTTAGCT
37069233 ATATGTGTAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.22, C:0.12, G:0.28, T:0.38
Consensus pattern (16 bp):
GTAGATACTGTTAGCT
Found at i:37075898 original size:21 final size:22
Alignment explanation
Indices: 37075862--37075903 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 22
37075852 TTAAATATTC
*
37075862 AAATTTGTTTAATATTCTCTTG
1 AAATTTGTTCAATATTCTCTTG
37075884 AAATTT-TTCAATATTCTCTT
1 AAATTTGTTCAATATTCTCTT
37075904 TTTCTTTTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 13 0.68
22 6 0.32
ACGTcount: A:0.29, C:0.12, G:0.05, T:0.55
Consensus pattern (22 bp):
AAATTTGTTCAATATTCTCTTG
Found at i:37076777 original size:44 final size:47
Alignment explanation
Indices: 37076728--37076822 Score: 135
Period size: 48 Copynumber: 2.1 Consensus size: 47
37076718 ACGTTCAAAC
*
37076728 AAACAAAAGTATAAGA-T-TA-TGCTTGGTTAG-TTGGAAAATTGAAG
1 AAACAAAAGTATAAGATTATACTGCTTGGTT-GTTTGGAAAAGTGAAG
37076772 AAACAAAAGTATAAGATTATACTTGCTTGGTTGTTTGGAAAAGTGAAG
1 AAACAAAAGTATAAGATTATAC-TGCTTGGTTGTTTGGAAAAGTGAAG
37076820 AAA
1 AAA
37076823 TGGAAGAAAT
Statistics
Matches: 45, Mismatches: 1, Indels: 6
0.87 0.02 0.12
Matches are distributed among these distances:
44 16 0.36
45 1 0.02
46 2 0.04
47 1 0.02
48 25 0.56
ACGTcount: A:0.43, C:0.05, G:0.22, T:0.29
Consensus pattern (47 bp):
AAACAAAAGTATAAGATTATACTGCTTGGTTGTTTGGAAAAGTGAAG
Found at i:37081525 original size:17 final size:18
Alignment explanation
Indices: 37081494--37081536 Score: 54
Period size: 17 Copynumber: 2.5 Consensus size: 18
37081484 GAAAATGTAC
*
37081494 ATAATAAAATGAAAATAT
1 ATAATAAAATAAAAATAT
37081512 ATAA-AAAATAAAAATA-
1 ATAATAAAATAAAAATAT
*
37081528 AAAATAAAA
1 ATAATAAAA
37081537 GTTTAGTTGA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
16 3 0.14
17 15 0.68
18 4 0.18
ACGTcount: A:0.77, C:0.00, G:0.02, T:0.21
Consensus pattern (18 bp):
ATAATAAAATAAAAATAT
Found at i:37087333 original size:18 final size:18
Alignment explanation
Indices: 37087287--37087334 Score: 50
Period size: 18 Copynumber: 2.8 Consensus size: 18
37087277 TATAAGAATA
*
37087287 TTAATTATTA-ATA-ATT
1 TTAATTATAATATATATT
37087303 TT-ATTA-AATTATATATT
1 TTAATTATAA-TATATATT
37087320 TTAATTATAATATAT
1 TTAATTATAATATAT
37087335 TTAATATATT
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
14 1 0.04
15 4 0.15
16 5 0.19
17 5 0.19
18 9 0.35
19 2 0.08
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (18 bp):
TTAATTATAATATATATT
Found at i:37087334 original size:16 final size:16
Alignment explanation
Indices: 37087287--37087336 Score: 50
Period size: 16 Copynumber: 3.1 Consensus size: 16
37087277 TATAAGAATA
37087287 TTAATTATTAATA-ATT
1 TTAATTA-TAATATATT
*
37087303 TT-ATTAAATTATATATT
1 TTAATT--ATAATATATT
37087320 TTAATTATAATATATT
1 TTAATTATAATATATT
37087336 T
1 T
37087337 AATATATTTA
Statistics
Matches: 28, Mismatches: 2, Indels: 8
0.74 0.05 0.21
Matches are distributed among these distances:
15 3 0.11
16 16 0.57
17 6 0.21
18 3 0.11
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (16 bp):
TTAATTATAATATATT
Found at i:37087362 original size:25 final size:24
Alignment explanation
Indices: 37087313--37087367 Score: 67
Period size: 24 Copynumber: 2.2 Consensus size: 24
37087303 TTATTAAATT
*
37087313 ATATATTTTAATTATAATATATTTA
1 ATATA-TTTAATAATAATATATTTA
*
37087338 ATATATTTAATAATAATTATGTTTA
1 ATATATTTAATAATAA-TATATTTA
37087363 A-ATAT
1 ATATAT
37087368 GATTAAATTA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
24 14 0.52
25 13 0.48
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (24 bp):
ATATATTTAATAATAATATATTTA
Found at i:37087554 original size:44 final size:45
Alignment explanation
Indices: 37087505--37087599 Score: 138
Period size: 45 Copynumber: 2.1 Consensus size: 45
37087495 TTACACCTCT
* *
37087505 ATTACATTCAACCAAACA-CAGTTTTACTATTACGCCTCTATTCC
1 ATTACATTCAACCAAACAGCAGATTTACTATTACACCTCTATTCC
** *
37087549 ATTACATTCAACCAAACAGTTGATTTGCTATTACACCTCTATTCC
1 ATTACATTCAACCAAACAGCAGATTTACTATTACACCTCTATTCC
37087594 ATTACA
1 ATTACA
37087600 CCTCTAATCC
Statistics
Matches: 45, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
44 18 0.40
45 27 0.60
ACGTcount: A:0.33, C:0.27, G:0.05, T:0.35
Consensus pattern (45 bp):
ATTACATTCAACCAAACAGCAGATTTACTATTACACCTCTATTCC
Found at i:37087599 original size:16 final size:16
Alignment explanation
Indices: 37087580--37087631 Score: 86
Period size: 16 Copynumber: 3.2 Consensus size: 16
37087570 GATTTGCTAT
* *
37087580 TACACCTCTATTCCAT
1 TACACCTCTAATCCAA
37087596 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
37087612 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
37087628 TACA
1 TACA
37087632 GCGAACCAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 34 1.00
ACGTcount: A:0.35, C:0.37, G:0.00, T:0.29
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:37092222 original size:6 final size:6
Alignment explanation
Indices: 37092211--37092239 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
37092201 GTTCTCCCCA
37092211 CCCTCT CCCTCT CCCTCT CCCTCT CCCTC
1 CCCTCT CCCTCT CCCTCT CCCTCT CCCTC
37092240 CCAACATCAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.00, C:0.69, G:0.00, T:0.31
Consensus pattern (6 bp):
CCCTCT
Found at i:37095912 original size:120 final size:120
Alignment explanation
Indices: 37095774--37096186 Score: 740
Period size: 120 Copynumber: 3.4 Consensus size: 120
37095764 AATTATTTTA
* * * * *
37095774 AATTTTATTAAATCATATATTTTAATTAAAATATATTTAATATTAATTAT-TTCAAATTT-TCTT
1 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTT--ACTTTATATT
*
37095837 TTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
64 TTACAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
37095894 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTACTTTATATTTT
1 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTACTTTATATTTT
37095959 ACAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
66 ACAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
37096014 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTACTTTATATTTT
1 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTACTTTATATTTT
37096079 ACAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
66 ACAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
37096134 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTT
1 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTT
37096187 TAAATATGAT
Statistics
Matches: 285, Mismatches: 6, Indels: 4
0.97 0.02 0.01
Matches are distributed among these distances:
119 4 0.01
120 279 0.98
121 2 0.01
ACGTcount: A:0.42, C:0.03, G:0.05, T:0.50
Consensus pattern (120 bp):
AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTACTTTATATTTT
ACAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
Found at i:37095934 original size:15 final size:15
Alignment explanation
Indices: 37095899--37095940 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
37095889 TTAAGAATTT
*
37095899 TATTAAATTAT-ATA
1 TATTTAATTATAATA
37095913 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
37095927 TATTTAATAATAAT
1 TATTTAATTATAAT
37095941 TATGTTACTT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 8 0.33
14 5 0.21
15 11 0.46
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:37096054 original size:15 final size:15
Alignment explanation
Indices: 37096019--37096060 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
37096009 TTAAGAATTT
*
37096019 TATTAAATTAT-ATA
1 TATTTAATTATAATA
37096033 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
37096047 TATTTAATAATAAT
1 TATTTAATTATAAT
37096061 TATGTTACTT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 8 0.33
14 5 0.21
15 11 0.46
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:37096169 original size:16 final size:16
Alignment explanation
Indices: 37096148--37096189 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
37096138 TTATTAAATT
*
37096148 ATATATTTTAATTATA
1 ATATATTTTAATAATA
37096164 ATATA-TTTAATAATA
1 ATATATTTTAATAATA
37096179 AT-TATGTTTAA
1 ATATAT-TTTAA
37096190 ATATGATTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 2 0.09
15 11 0.48
16 10 0.43
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
ATATATTTTAATAATA
Found at i:37096174 original size:15 final size:15
Alignment explanation
Indices: 37096139--37096180 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
37096129 TTAAGAATTT
*
37096139 TATTAAATTAT-ATA
1 TATTTAATTATAATA
37096153 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
37096167 TATTTAATAATAAT
1 TATTTAATTATAAT
37096181 TATGTTTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 8 0.33
14 5 0.21
15 11 0.46
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:37096330 original size:157 final size:157
Alignment explanation
Indices: 37096123--37096439 Score: 555
Period size: 157 Copynumber: 2.0 Consensus size: 157
37096113 ATAAGAATAT
*
37096123 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTT
1 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
* * *
37096188 AAATATGATTAAATTATTTATTATTGATATTAATAATCTTATTAAAATTTAAATAACAATAACAA
66 AAATATGATTAAAATATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAA
*
37096253 TAATAATTTACCAAAACAAATTTCTGC
131 TAATAATTTACCAAAACAAATTTATGC
37096280 TAATTA-TAAGAATTTTATTAAATTATATATTATTAATTAAAATATATTTAATAATAATTATGTT
1 TAATTATTAAGAATTTTATTAAATTATATATT-TTAATTAAAATATATTTAATAATAATTATGTT
37096344 TAAATATGATTAAAATATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAACAATAACA
65 TAAATATGATTAAAATATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAACAATAACA
* *
37096409 ATAATCATTTACCAAAACAATTTTATGC
130 ATAATAATTTACCAAAACAAATTTATGC
37096437 TAA
1 TAA
37096440 GGGTATTCTA
Statistics
Matches: 152, Mismatches: 7, Indels: 2
0.94 0.04 0.01
Matches are distributed among these distances:
156 25 0.16
157 127 0.84
ACGTcount: A:0.48, C:0.05, G:0.03, T:0.44
Consensus pattern (157 bp):
TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
AAATATGATTAAAATATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAA
TAATAATTTACCAAAACAAATTTATGC
Found at i:37096556 original size:44 final size:45
Alignment explanation
Indices: 37096491--37096581 Score: 121
Period size: 45 Copynumber: 2.0 Consensus size: 45
37096481 ACCTCTATTC
* * *
37096491 CATTCAACCAAACACAAGATTA-CTATTACGCCTCTATTCCATTA
1 CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
***
37096535 CATTCAACCAAACAGTGGATTAGCTATTACACCTCTAATCCAATA
1 CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
37096580 CA
1 CA
37096582 CCTCTAATCC
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 19 0.47
45 21 0.52
ACGTcount: A:0.37, C:0.29, G:0.07, T:0.27
Consensus pattern (45 bp):
CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
Found at i:37096583 original size:16 final size:16
Alignment explanation
Indices: 37096562--37096630 Score: 120
Period size: 16 Copynumber: 4.2 Consensus size: 16
37096552 GATTAGCTAT
37096562 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
37096578 TACACCTCTAATCCCAA
1 TACACCTCTAAT-CCAA
*
37096595 TACACCTCTAATTCAA
1 TACACCTCTAATCCAA
37096611 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
37096627 TACA
1 TACA
37096631 GCGAACCAAA
Statistics
Matches: 50, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
16 34 0.68
17 16 0.32
ACGTcount: A:0.38, C:0.36, G:0.00, T:0.26
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:37096604 original size:33 final size:32
Alignment explanation
Indices: 37096562--37096630 Score: 120
Period size: 33 Copynumber: 2.1 Consensus size: 32
37096552 GATTAGCTAT
37096562 TACACCTCTAATCCAATACACCTCTAATCCCAA
1 TACACCTCTAATCCAATACACCTCTAAT-CCAA
*
37096595 TACACCTCTAATTCAATACACCTCTAATCCAA
1 TACACCTCTAATCCAATACACCTCTAATCCAA
37096627 TACA
1 TACA
37096631 GCGAACCAAA
Statistics
Matches: 35, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
32 8 0.23
33 27 0.77
ACGTcount: A:0.38, C:0.36, G:0.00, T:0.26
Consensus pattern (32 bp):
TACACCTCTAATCCAATACACCTCTAATCCAA
Found at i:37101554 original size:14 final size:14
Alignment explanation
Indices: 37101535--37101561 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
37101525 TTGCGGATGA
37101535 TGGTGGTGGTGGTG
1 TGGTGGTGGTGGTG
37101549 TGGTGGTGGTGGT
1 TGGTGGTGGTGGT
37101562 TGTTGTCGTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.00, C:0.00, G:0.63, T:0.37
Consensus pattern (14 bp):
TGGTGGTGGTGGTG
Found at i:37101623 original size:24 final size:24
Alignment explanation
Indices: 37101594--37101643 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
37101584 TCTTGAGTCA
37101594 TTCTAGTTGAATTCTCGGTAACAT
1 TTCTAGTTGAATTCTCGGTAACAT
37101618 TTCTAGTTGAATTCTCGGTAACAT
1 TTCTAGTTGAATTCTCGGTAACAT
37101642 TT
1 TT
37101644 GCATGGTTTG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.24, C:0.16, G:0.16, T:0.44
Consensus pattern (24 bp):
TTCTAGTTGAATTCTCGGTAACAT
Found at i:37106605 original size:23 final size:23
Alignment explanation
Indices: 37106579--37106624 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
37106569 GATGGCCCGC
37106579 TACCCAAAACCAACCCAAATAAA
1 TACCCAAAACCAACCCAAATAAA
37106602 TACCCAAAACCAACCCAAATAAA
1 TACCCAAAACCAACCCAAATAAA
37106625 ACACCCAAGG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.57, C:0.35, G:0.00, T:0.09
Consensus pattern (23 bp):
TACCCAAAACCAACCCAAATAAA
Found at i:37107722 original size:3 final size:3
Alignment explanation
Indices: 37107716--37107747 Score: 55
Period size: 3 Copynumber: 10.7 Consensus size: 3
37107706 ATTATTGAGT
*
37107716 TTA TTA TTA TTA TTA TTA TTA TCA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
37107748 GCATTTTATT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.31, C:0.03, G:0.00, T:0.66
Consensus pattern (3 bp):
TTA
Found at i:37107762 original size:9 final size:10
Alignment explanation
Indices: 37107700--37107761 Score: 56
Period size: 12 Copynumber: 5.9 Consensus size: 10
37107690 TCCTATCATT
37107700 TTATTTATTA
1 TTATTTATTA
37107710 TTGAGTTTATTA
1 TT-A-TTTATTA
37107722 TTA-TTATTA
1 TTATTTATTA
37107731 TTATTATCATTA
1 TTATT-T-ATTA
*
37107743 TTATTGCATT-
1 TTATT-TATTA
37107753 TTATTTATT
1 TTATTTATT
37107762 TATTTGTACC
Statistics
Matches: 44, Mismatches: 3, Indels: 11
0.76 0.05 0.19
Matches are distributed among these distances:
9 12 0.27
10 8 0.18
11 6 0.14
12 18 0.41
ACGTcount: A:0.27, C:0.03, G:0.05, T:0.65
Consensus pattern (10 bp):
TTATTTATTA
Found at i:37121715 original size:31 final size:31
Alignment explanation
Indices: 37121679--37121752 Score: 78
Period size: 30 Copynumber: 2.4 Consensus size: 31
37121669 TACATAAAAC
*
37121679 AATATAAAAATACAAACATCTCAAAATCTAT
1 AATATAAAAATACAAACATATCAAAATCTAT
* * * *
37121710 AATAT-AAATTATAAACCTATCAAAATTTAT
1 AATATAAAAATACAAACATATCAAAATCTAT
*
37121740 ATAAATAAAAATA
1 A-ATATAAAAATA
37121753 ATATAACAAG
Statistics
Matches: 34, Mismatches: 7, Indels: 3
0.77 0.16 0.07
Matches are distributed among these distances:
30 21 0.62
31 8 0.24
32 5 0.15
ACGTcount: A:0.59, C:0.11, G:0.00, T:0.30
Consensus pattern (31 bp):
AATATAAAAATACAAACATATCAAAATCTAT
Found at i:37124749 original size:35 final size:35
Alignment explanation
Indices: 37124708--37124778 Score: 133
Period size: 35 Copynumber: 2.0 Consensus size: 35
37124698 AGGAAATGAG
*
37124708 AAGTCACAAGAGAATGAAACACATTGATCGGAAGT
1 AAGTCACAAGAGAACGAAACACATTGATCGGAAGT
37124743 AAGTCACAAGAGAACGAAACACATTGATCGGAAGT
1 AAGTCACAAGAGAACGAAACACATTGATCGGAAGT
37124778 A
1 A
37124779 TCACTTGATA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.46, C:0.15, G:0.23, T:0.15
Consensus pattern (35 bp):
AAGTCACAAGAGAACGAAACACATTGATCGGAAGT
Found at i:37130431 original size:20 final size:20
Alignment explanation
Indices: 37130390--37130431 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
37130380 AGCTCATGTA
*
37130390 TTTCATAAAATTTAGAATTT
1 TTTCATAAAATTTAGAACTT
* *
37130410 TTTCATAAATTTTATAACTT
1 TTTCATAAAATTTAGAACTT
37130430 TT
1 TT
37130432 CAATTTAGTC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.36, C:0.07, G:0.02, T:0.55
Consensus pattern (20 bp):
TTTCATAAAATTTAGAACTT
Found at i:37130609 original size:19 final size:19
Alignment explanation
Indices: 37130585--37130623 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
37130575 CAAATTAATC
37130585 CTGGAAATGATTTACTTTT
1 CTGGAAATGATTTACTTTT
37130604 CTGGAAATGATTTACTTTT
1 CTGGAAATGATTTACTTTT
37130623 C
1 C
37130624 CGGTGTTTCG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.26, C:0.13, G:0.15, T:0.46
Consensus pattern (19 bp):
CTGGAAATGATTTACTTTT
Found at i:37133692 original size:18 final size:18
Alignment explanation
Indices: 37133654--37133693 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
37133644 TGAATGCGTT
* *
37133654 GGAAGAAGAAGAAACAGA
1 GGAAAAAGAAGAAACAAA
*
37133672 GGAAAAAGAAGAAGCAAA
1 GGAAAAAGAAGAAACAAA
37133690 GGAA
1 GGAA
37133694 TTAGCCGACG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.62, C:0.05, G:0.33, T:0.00
Consensus pattern (18 bp):
GGAAAAAGAAGAAACAAA
Found at i:37134825 original size:56 final size:56
Alignment explanation
Indices: 37134699--37134825 Score: 134
Period size: 56 Copynumber: 2.3 Consensus size: 56
37134689 TTTATACATA
* * * *
37134699 TATATTTTTACATTTTTTATAATTTTCTTATGACTTTATTAAAAAAAATATATTTC
1 TATATTTATATATATTTTATAATTTTCTTATGACTTTATTAAAAAAAATACATTTC
* * * *
37134755 TATATTTCTCTATATTTTATAATTTT-TTATGA-TTT-TTAAAAAAATTTACCATTTT
1 TATATTTATATATATTTTATAATTTTCTTATGACTTTATTAAAAAAA-ATA-CATTTC
37134810 TACTATTTATATATAT
1 TA-TATTTATATATAT
37134826 GTTTTTCTTC
Statistics
Matches: 59, Mismatches: 9, Indels: 6
0.80 0.12 0.08
Matches are distributed among these distances:
53 9 0.15
54 5 0.08
55 12 0.20
56 33 0.56
ACGTcount: A:0.35, C:0.07, G:0.02, T:0.57
Consensus pattern (56 bp):
TATATTTATATATATTTTATAATTTTCTTATGACTTTATTAAAAAAAATACATTTC
Found at i:37136555 original size:36 final size:35
Alignment explanation
Indices: 37136472--37136560 Score: 103
Period size: 36 Copynumber: 2.5 Consensus size: 35
37136462 ACAAAACGAG
*
37136472 GTTT-AGGATTTAATTGTAGAATAAGAAAATTTGT
1 GTTTAAGGATTAAATTGTAGAATAAGAAAATTTGT
*
37136506 GTTTGAGGAATTAAATTGTAGAAT-AGTAAAATTTG-
1 GTTTAAGG-ATTAAATTGTAGAATAAG-AAAATTTGT
37136541 GATTTCAAGGATTAAATTGT
1 G-TTT-AAGGATTAAATTGT
37136561 CAAAAAAATA
Statistics
Matches: 48, Mismatches: 2, Indels: 8
0.83 0.03 0.14
Matches are distributed among these distances:
34 4 0.08
35 6 0.12
36 35 0.73
37 3 0.06
ACGTcount: A:0.38, C:0.01, G:0.21, T:0.39
Consensus pattern (35 bp):
GTTTAAGGATTAAATTGTAGAATAAGAAAATTTGT
Found at i:37146472 original size:22 final size:23
Alignment explanation
Indices: 37146423--37146477 Score: 64
Period size: 21 Copynumber: 2.6 Consensus size: 23
37146413 TCGCCCCTAA
* *
37146423 AATGA-AAAATTTTCCATTTAAT
1 AATGATAAAATTTTCAAATTAAT
37146445 -AT-ATAAAATTTT-AAATTAAT
1 AATGATAAAATTTTCAAATTAAT
37146465 AATGATAAAATTT
1 AATGATAAAATTT
37146478 ATTTTGATCC
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
20 7 0.25
21 12 0.43
22 9 0.32
ACGTcount: A:0.51, C:0.04, G:0.04, T:0.42
Consensus pattern (23 bp):
AATGATAAAATTTTCAAATTAAT
Found at i:37147844 original size:31 final size:31
Alignment explanation
Indices: 37147775--37147835 Score: 95
Period size: 31 Copynumber: 2.0 Consensus size: 31
37147765 TTTGCCAAGG
*
37147775 TCAAATTTCAATTTTAATCTCTATGCTACAA
1 TCAAATTTCAATTTTAATCCCTATGCTACAA
* *
37147806 TCAAATTTCAATTTTGATCCCTCTGCTACA
1 TCAAATTTCAATTTTAATCCCTATGCTACA
37147836 GTTGAATTTA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.31, C:0.23, G:0.05, T:0.41
Consensus pattern (31 bp):
TCAAATTTCAATTTTAATCCCTATGCTACAA
Found at i:37148746 original size:22 final size:22
Alignment explanation
Indices: 37148721--37148767 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
37148711 CGAATTTTGC
* *
37148721 TGGTAAAATATGAAAATAATTA
1 TGGTAAAATAAGAAAACAATTA
*
37148743 TGGTAAAATAAGACAACAATTA
1 TGGTAAAATAAGAAAACAATTA
37148765 TGG
1 TGG
37148768 ATTAAAAAGT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.51, C:0.04, G:0.17, T:0.28
Consensus pattern (22 bp):
TGGTAAAATAAGAAAACAATTA
Found at i:37150445 original size:6 final size:6
Alignment explanation
Indices: 37150434--37150522 Score: 97
Period size: 6 Copynumber: 14.8 Consensus size: 6
37150424 TCCGCCCCCA
* * * * * *
37150434 CCGCCT CCGCCT CGGCCT CTGCCT CGGCCT ACGCCT CCACCT CTGCCT
1 CCGCCT CCGCCT CCGCCT CCGCCT CCGCCT CCGCCT CCGCCT CCGCCT
* * *
37150482 CTGTCT CCGTCT CCGCCT CCGCCT CCGCCT CCGCCT CCGCC
1 CCGCCT CCGCCT CCGCCT CCGCCT CCGCCT CCGCCT CCGCC
37150523 ATCATTTGCT
Statistics
Matches: 71, Mismatches: 12, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
6 71 1.00
ACGTcount: A:0.02, C:0.58, G:0.18, T:0.21
Consensus pattern (6 bp):
CCGCCT
Found at i:37153008 original size:7 final size:8
Alignment explanation
Indices: 37152995--37153028 Score: 68
Period size: 8 Copynumber: 4.2 Consensus size: 8
37152985 TAAAACTATA
37152995 AAAAAAAT
1 AAAAAAAT
37153003 AAAAAAAT
1 AAAAAAAT
37153011 AAAAAAAT
1 AAAAAAAT
37153019 AAAAAAAT
1 AAAAAAAT
37153027 AA
1 AA
37153029 GAACTTAGTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 26 1.00
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (8 bp):
AAAAAAAT
Found at i:37153306 original size:13 final size:12
Alignment explanation
Indices: 37153288--37153331 Score: 52
Period size: 13 Copynumber: 3.4 Consensus size: 12
37153278 TCAAAATCTA
37153288 TGAAACCTTTTAT
1 TGAAACCTTTT-T
*
37153301 TGAAACCATTTT
1 TGAAACCTTTTT
37153313 TGAAACCATTTTTT
1 TGAAACC--TTTTT
37153327 TGAAA
1 TGAAA
37153332 ACGGGGATTG
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
12 8 0.30
13 10 0.37
14 9 0.33
ACGTcount: A:0.34, C:0.14, G:0.09, T:0.43
Consensus pattern (12 bp):
TGAAACCTTTTT
Found at i:37153317 original size:12 final size:12
Alignment explanation
Indices: 37153288--37153325 Score: 58
Period size: 12 Copynumber: 3.1 Consensus size: 12
37153278 TCAAAATCTA
*
37153288 TGAAACCTTTTAT
1 TGAAACCATTT-T
37153301 TGAAACCATTTT
1 TGAAACCATTTT
37153313 TGAAACCATTTT
1 TGAAACCATTTT
37153325 T
1 T
37153326 TTGAAAACGG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
12 14 0.58
13 10 0.42
ACGTcount: A:0.32, C:0.16, G:0.08, T:0.45
Consensus pattern (12 bp):
TGAAACCATTTT
Found at i:37154384 original size:27 final size:28
Alignment explanation
Indices: 37154309--37154372 Score: 82
Period size: 28 Copynumber: 2.4 Consensus size: 28
37154299 AATATTCAAC
*
37154309 ATAAA-TAAAATATAAA-C-AATTTGAA
1 ATAAAGTAATATATAAAGCAAATTTGAA
*
37154334 ATAAAGTAATATATAAAGCAAATTTTAA
1 ATAAAGTAATATATAAAGCAAATTTGAA
37154362 ATAAA-TAATAT
1 ATAAAGTAATAT
37154373 GTTAAATAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
25 5 0.15
26 10 0.29
27 7 0.21
28 12 0.35
ACGTcount: A:0.61, C:0.03, G:0.05, T:0.31
Consensus pattern (28 bp):
ATAAAGTAATATATAAAGCAAATTTGAA
Found at i:37154972 original size:29 final size:27
Alignment explanation
Indices: 37154927--37154989 Score: 67
Period size: 29 Copynumber: 2.3 Consensus size: 27
37154917 TATATATGAA
* *
37154927 AAATAAAAGTAATATTAATATATAAATAT
1 AAATAGAAGTAATATTAAT-GA-AAATAT
37154956 AAATAGAAGT-ATAATTAATGAAAATAT
1 AAATAGAAGTAAT-ATTAATGAAAATAT
37154983 -AATAGAA
1 AAATAGAA
37154990 ACATAAATAA
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
26 7 0.23
27 6 0.19
28 3 0.10
29 15 0.48
ACGTcount: A:0.62, C:0.00, G:0.08, T:0.30
Consensus pattern (27 bp):
AAATAGAAGTAATATTAATGAAAATAT
Found at i:37155006 original size:27 final size:27
Alignment explanation
Indices: 37154950--37155006 Score: 62
Period size: 27 Copynumber: 2.1 Consensus size: 27
37154940 ATTAATATAT
** * *
37154950 AAATATAAATAGAAGTATAATTAATGA
1 AAATATAAATAGAAACATAATAAATAA
37154977 AAATAT-AATAGAAACATAAATAAATAA
1 AAATATAAATAGAAACAT-AATAAATAA
37155004 AAA
1 AAA
37155007 AAATTAGAGA
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
26 9 0.36
27 16 0.64
ACGTcount: A:0.67, C:0.02, G:0.07, T:0.25
Consensus pattern (27 bp):
AAATATAAATAGAAACATAATAAATAA
Found at i:37156004 original size:16 final size:16
Alignment explanation
Indices: 37155972--37156017 Score: 51
Period size: 16 Copynumber: 2.8 Consensus size: 16
37155962 ATCGATTTGA
37155972 AAAGAAAAGA-AAGAAAG
1 AAAGAAAA-ATAA-AAAG
37155989 TAAA-AAAAATAAAAAG
1 -AAAGAAAAATAAAAAG
37156005 AAAGAAAAATAAA
1 AAAGAAAAATAAA
37156018 TAAATAGCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
15 3 0.12
16 14 0.54
17 6 0.23
18 3 0.12
ACGTcount: A:0.80, C:0.00, G:0.13, T:0.07
Consensus pattern (16 bp):
AAAGAAAAATAAAAAG
Found at i:37156004 original size:20 final size:20
Alignment explanation
Indices: 37155981--37156021 Score: 66
Period size: 20 Copynumber: 2.0 Consensus size: 20
37155971 AAAAGAAAAG
37155981 AAAGAAAGTAAAAA-AAATAA
1 AAAGAAAG-AAAAATAAATAA
37156001 AAAGAAAGAAAAATAAATAA
1 AAAGAAAGAAAAATAAATAA
37156021 A
1 A
37156022 TAGCGGTAAC
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
19 5 0.25
20 15 0.75
ACGTcount: A:0.80, C:0.00, G:0.10, T:0.10
Consensus pattern (20 bp):
AAAGAAAGAAAAATAAATAA
Found at i:37157561 original size:26 final size:27
Alignment explanation
Indices: 37157511--37157562 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 27
37157501 AGGAGAAACA
* *
37157511 CAGATCAAGCTAGAACAACCTAACATT
1 CAGACCAAGCTAGAACAACCCAACATT
37157538 CAGACCAAGCTAG-ACAACCCAACAT
1 CAGACCAAGCTAGAACAACCCAACAT
37157563 CCGACCTCTT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 11 0.48
27 12 0.52
ACGTcount: A:0.44, C:0.31, G:0.12, T:0.13
Consensus pattern (27 bp):
CAGACCAAGCTAGAACAACCCAACATT
Found at i:37159898 original size:32 final size:32
Alignment explanation
Indices: 37159857--37159964 Score: 171
Period size: 32 Copynumber: 3.4 Consensus size: 32
37159847 GGCCCGCACG
37159857 TGTGGGTCCACATGCCCATATGGGCTTACACA
1 TGTGGGTCCACATGCCCATATGGGCTTACACA
37159889 TGTGGGTCCACATGCCCATATGGGCTTACACA
1 TGTGGGTCCACATGCCCATATGGGCTTACACA
* * * * *
37159921 TGTGGGTCCACACGCCCATGTAGGCCTGCACA
1 TGTGGGTCCACATGCCCATATGGGCTTACACA
37159953 TGTGGGTCCACA
1 TGTGGGTCCACA
37159965 AGCTGATGTG
Statistics
Matches: 71, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
32 71 1.00
ACGTcount: A:0.20, C:0.30, G:0.27, T:0.23
Consensus pattern (32 bp):
TGTGGGTCCACATGCCCATATGGGCTTACACA
Found at i:37162205 original size:35 final size:35
Alignment explanation
Indices: 37162046--37162207 Score: 184
Period size: 35 Copynumber: 4.7 Consensus size: 35
37162036 TTCCTCATTG
* * *
37162046 TAATACCATACCTACATTTTACAACTCGGTATAGGA
1 TAATACCATACCTACGTTTCACAACTCAGTAT-GGA
* ** *
37162082 -AATGCCATACCTACGTTTCTTAACTCAGTATAGA
1 TAATACCATACCTACGTTTCACAACTCAGTATGGA
* *
37162116 TAATACCATACCTACGTATCACAACTCAGTATGGT
1 TAATACCATACCTACGTTTCACAACTCAGTATGGA
* * *
37162151 TAATA-CATACCTACATTTCACAACGCAGCATGGA
1 TAATACCATACCTACGTTTCACAACTCAGTATGGA
*
37162185 TGATACCATACCTACGTTTCACA
1 TAATACCATACCTACGTTTCACA
37162208 GCTTTGCCAT
Statistics
Matches: 104, Mismatches: 20, Indels: 5
0.81 0.16 0.04
Matches are distributed among these distances:
34 30 0.29
35 74 0.71
ACGTcount: A:0.35, C:0.25, G:0.11, T:0.29
Consensus pattern (35 bp):
TAATACCATACCTACGTTTCACAACTCAGTATGGA
Found at i:37166105 original size:21 final size:21
Alignment explanation
Indices: 37166071--37166116 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 21
37166061 ACACACGTCT
**
37166071 GTGTGGCCAAGGGACATGCCC
1 GTGTGGCCAAGGGACACACCC
**
37166092 GTGTGGCCTTGGGACACACCC
1 GTGTGGCCAAGGGACACACCC
37166113 GTGT
1 GTGT
37166117 CTCAAGCTGT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.15, C:0.28, G:0.37, T:0.20
Consensus pattern (21 bp):
GTGTGGCCAAGGGACACACCC
Found at i:37171553 original size:300 final size:305
Alignment explanation
Indices: 37171121--37171678 Score: 740
Period size: 300 Copynumber: 1.8 Consensus size: 305
37171111 CTTAAATAAT
* * *
37171121 AGTATAGATATACAATTGATATAGATAATAAAGTGTGCATAATAAAATTAAATTTTTTTAAAAAA
1 AGTATAGATATACAATTGAGAGAGATAAAAAAGTGTGCATAATAAAATTAAATTTTTTT-AAAAA
*
37171186 TATCAAAATAAAGCTTTAGTTGAATGGTAAGTTAAAAGTTTTATTAATGCAATTAATGTAGGTTC
65 TATCAAAATAAAGCTTTAGTTGAATGGTAAATTAAAAGTTTTATTAATGCAATTAATGTAGGTTC
** ** * **
37171251 AAATTCCATTTTATGCATATTTTTA-TTATT-ATTTTA-AAGTAAAA-TATTAAAATAC-CTTCG
130 AAATTCCATAATAAACATATTTTTATTTATTCATTTTATAA-TAAAAGAACAAAAATACAC-TCG
* *
37171311 AATAATATAACTTGTTTTAATTATGAAAGGACATTTTAATAATTTTTCTAACCAAGTTGGTGACC
193 AATAATATAACTTGTTTTAATTACGAAAAGACATTTTAATAATTTTTCTAACCAAGTTGGTGACC
37171376 GCTTGACTTGTGACACCAACTTTGTCAAGGCATAAATAATAATATAGA
258 GCTTGACTTGTGACACCAACTTTGTCAAGGCATAAATAATAATATAGA
* * *
37171424 AGTATAGTTATACAATTGAGGGAGGTAAAAAAGTGTGCATAATAAAA-T-AATATTTTTT-AAAA
1 AGTATAGATATACAATTGAGAGAGATAAAAAAGTGTGCATAATAAAATTAAAT-TTTTTTAAAAA
* *
37171486 TATCAAAATAAAGCTTTAGTTGAGTGGTAAATT-AAAGATTTTATTAATGCAATTGATGT-GAGT
65 TATCAAAATAAAGCTTTAGTTGAATGGTAAATTAAAAG-TTTTATTAATGCAATTAATGTAG-GT
*
37171549 TCAAATTCCATAATAAACATATTTTTATTTATTCTTTTTATTTTAATAAAAGAACAAAAATACAC
128 TCAAATTCCATAATAAACATATTTTTATTTATTCATTTTA---TAATAAAAGAACAAAAATACAC
*** ** *
37171614 TCGAATAATATAACTTGTTTTAATTACGAAAATTTATTTTCGTAATTTTTCTAACCGAGTTGGTG
190 TCGAATAATATAACTTGTTTTAATTACGAAAAGACATTTTAATAATTTTTCTAACCAAGTTGGTG
37171679 CCTAATTGAC
Statistics
Matches: 219, Mismatches: 25, Indels: 19
0.83 0.10 0.07
Matches are distributed among these distances:
299 5 0.02
300 80 0.37
301 8 0.04
302 12 0.05
303 41 0.19
305 5 0.02
306 67 0.31
307 1 0.00
ACGTcount: A:0.40, C:0.08, G:0.13, T:0.39
Consensus pattern (305 bp):
AGTATAGATATACAATTGAGAGAGATAAAAAAGTGTGCATAATAAAATTAAATTTTTTTAAAAAT
ATCAAAATAAAGCTTTAGTTGAATGGTAAATTAAAAGTTTTATTAATGCAATTAATGTAGGTTCA
AATTCCATAATAAACATATTTTTATTTATTCATTTTATAATAAAAGAACAAAAATACACTCGAAT
AATATAACTTGTTTTAATTACGAAAAGACATTTTAATAATTTTTCTAACCAAGTTGGTGACCGCT
TGACTTGTGACACCAACTTTGTCAAGGCATAAATAATAATATAGA
Found at i:37171805 original size:23 final size:21
Alignment explanation
Indices: 37171763--37171810 Score: 51
Period size: 23 Copynumber: 2.2 Consensus size: 21
37171753 GTCACTCAAC
* * *
37171763 TATTAATTTTTTTGATTTAAT
1 TATTAATTTTTTTAAATTAAA
37171784 TATTAATTTTTTTCTAAATTAAA
1 TATTAA-TTTTTT-TAAATTAAA
37171807 TATT
1 TATT
37171811 TTAATCATAA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
21 6 0.27
22 6 0.27
23 10 0.45
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.62
Consensus pattern (21 bp):
TATTAATTTTTTTAAATTAAA
Found at i:37175005 original size:23 final size:22
Alignment explanation
Indices: 37174974--37175029 Score: 53
Period size: 22 Copynumber: 2.5 Consensus size: 22
37174964 AGTCCGTCTC
* *
37174974 ATATTTTTAATTTTTCTTAAAAT-
1 ATATATTTAATTATT-TT-AAATG
37174997 ATATATTTATATTATTTTAAATG
1 ATATATTTA-ATTATTTTAAATG
37175020 A-ATATTTAAT
1 ATATATTTAAT
37175030 AAATTTATAT
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
21 2 0.07
22 11 0.38
23 11 0.38
24 5 0.17
ACGTcount: A:0.39, C:0.02, G:0.02, T:0.57
Consensus pattern (22 bp):
ATATATTTAATTATTTTAAATG
Found at i:37175168 original size:17 final size:17
Alignment explanation
Indices: 37175146--37175183 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
37175136 GTTATTAACT
*
37175146 ACATAATATATAAA-AAA
1 ACATAACATA-AAATAAA
37175163 ACATAACATAAAATAAA
1 ACATAACATAAAATAAA
37175180 ACAT
1 ACAT
37175184 TACAAACTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
16 3 0.16
17 16 0.84
ACGTcount: A:0.68, C:0.11, G:0.00, T:0.21
Consensus pattern (17 bp):
ACATAACATAAAATAAA
Found at i:37178500 original size:37 final size:37
Alignment explanation
Indices: 37178403--37178748 Score: 311
Period size: 37 Copynumber: 9.3 Consensus size: 37
37178393 GAATACTAAA
* * * *
37178403 TATACTGAACGTGCTCAAAAGAGTAATGTCTACTGAT
1 TATACTGAATGTGCTCAAACGAGCAATATCTACTGAT
* *
37178440 TATACTAAAAGTTGCTCAAACGAGCAATATCCT-CTGAT
1 TATACTGAATG-TGCTCAAACGAGCAATAT-CTACTGAT
* * *
37178478 TATACTGAATGGGCTCAAACGAGCAATGTCTAATGAT
1 TATACTGAATGTGCTCAAACGAGCAATATCTACTGAT
* * *
37178515 TATACTGAATGTACTCAAACGAGCAATATCTACTAAA
1 TATACTGAATGTGCTCAAACGAGCAATATCTACTGAT
* * * * *
37178552 TCTACTGAACGTGCTCGAAA-GAGCAATGTCTATTCAT
1 TATACTGAATGTGCTC-AAACGAGCAATATCTACTGAT
* ** * *
37178589 TATACTGAAAGTTAATCAAACGAGCAATATCCACTAAT
1 TATACTGAATG-TGCTCAAACGAGCAATATCTACTGAT
* *
37178627 TATACCGAATG-GACTCAAACGAGCAATATCTACTGAA
1 TATACTGAATGTG-CTCAAACGAGCAATATCTACTGAT
* * * ** *
37178664 TATAGTAAACGTGCTCAAAAAAGCAATGTCTACTGAT
1 TATACTGAATGTGCTCAAACGAGCAATATCTACTGAT
* * *
37178701 TATACTGAAAGTTGCTCAAACGAGCGATATCCACTGAT
1 TATACTGAATG-TGCTCAAACGAGCAATATCTACTGAT
*
37178739 TATACGGAAT
1 TATACTGAAT
37178749 TCATGCTCAA
Statistics
Matches: 244, Mismatches: 56, Indels: 17
0.77 0.18 0.05
Matches are distributed among these distances:
36 2 0.01
37 153 0.63
38 87 0.36
39 2 0.01
ACGTcount: A:0.38, C:0.19, G:0.16, T:0.27
Consensus pattern (37 bp):
TATACTGAATGTGCTCAAACGAGCAATATCTACTGAT
Found at i:37178608 original size:112 final size:112
Alignment explanation
Indices: 37178492--37178748 Score: 352
Period size: 112 Copynumber: 2.3 Consensus size: 112
37178482 CTGAATGGGC
* * * * * *
37178492 TCAAACGAGCAATGTCTAATGATTATACTGAATGTACTCAAACGAGCAATATCTACTAAATCTAC
1 TCAAACGAGCAATATCCACTGATTATACCGAATGGACTCAAACGAGCAATATCTACTAAATATAC
* * * *
37178557 TGAACGTGCTCGAAAGAGCAATGTCTATTCATTATACTGAAAGTTAA
66 TAAACGTGCTCAAAAAAGCAATGTCTACTCATTATACTGAAAGTTAA
* * *
37178604 TCAAACGAGCAATATCCACTAATTATACCGAATGGACTCAAACGAGCAATATCTACTGAATATAG
1 TCAAACGAGCAATATCCACTGATTATACCGAATGGACTCAAACGAGCAATATCTACTAAATATAC
* **
37178669 TAAACGTGCTCAAAAAAGCAATGTCTACTGATTATACTGAAAGTTGC
66 TAAACGTGCTCAAAAAAGCAATGTCTACTCATTATACTGAAAGTTAA
* *
37178716 TCAAACGAGCGATATCCACTGATTATACGGAAT
1 TCAAACGAGCAATATCCACTGATTATACCGAAT
37178749 TCATGCTCAA
Statistics
Matches: 126, Mismatches: 19, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
112 126 1.00
ACGTcount: A:0.39, C:0.19, G:0.16, T:0.26
Consensus pattern (112 bp):
TCAAACGAGCAATATCCACTGATTATACCGAATGGACTCAAACGAGCAATATCTACTAAATATAC
TAAACGTGCTCAAAAAAGCAATGTCTACTCATTATACTGAAAGTTAA
Found at i:37178681 original size:149 final size:149
Alignment explanation
Indices: 37178396--37178743 Score: 417
Period size: 149 Copynumber: 2.3 Consensus size: 149
37178386 AAAAATGGAA
* * **
37178396 TACTAAATATACTGAACGTGCTCAAAAGAGTAATGTCTACTGATTATACTAAAAGTTGCTCAAAC
1 TACTAAATATACTGAACGTGCTCAAAAGAGCAATGTCTACTCATTATACTAAAAGTTAATCAAAC
* * * * * * * *
37178461 GAGCAATATCCTCTGATTATACTGAATGGGCTCAAACGAGCAATGTCTAATGATTATACTGAATG
66 GAGCAATATCCACTAATTATACCGAATGGACTCAAACGAGCAATATCTAATGAATATACTAAACG
**
37178526 TACTCAAACGAGCAATATC
131 TACTCAAAAAAGCAATATC
* * * *
37178545 TACTAAATCTACTGAACGTGCTCGAAAGAGCAATGTCTATTCATTATACTGAAAGTTAATCAAAC
1 TACTAAATATACTGAACGTGCTCAAAAGAGCAATGTCTACTCATTATACTAAAAGTTAATCAAAC
* *
37178610 GAGCAATATCCACTAATTATACCGAATGGACTCAAACGAGCAATATCTACTGAATATAGTAAACG
66 GAGCAATATCCACTAATTATACCGAATGGACTCAAACGAGCAATATCTAATGAATATACTAAACG
* *
37178675 TGCTCAAAAAAGCAATGTC
131 TACTCAAAAAAGCAATATC
* * * * * * * *
37178694 TACTGATTATACTGAAAGTTGCTCAAACGAGCGATATCCACTGATTATAC
1 TACTAAATATACTGAACG-TGCTCAAAAGAGCAATGTCTACTCATTATAC
37178744 GGAATTCATG
Statistics
Matches: 165, Mismatches: 33, Indels: 1
0.83 0.17 0.01
Matches are distributed among these distances:
149 141 0.85
150 24 0.15
ACGTcount: A:0.38, C:0.19, G:0.16, T:0.27
Consensus pattern (149 bp):
TACTAAATATACTGAACGTGCTCAAAAGAGCAATGTCTACTCATTATACTAAAAGTTAATCAAAC
GAGCAATATCCACTAATTATACCGAATGGACTCAAACGAGCAATATCTAATGAATATACTAAACG
TACTCAAAAAAGCAATATC
Found at i:37186720 original size:37 final size:38
Alignment explanation
Indices: 37186651--37186791 Score: 187
Period size: 39 Copynumber: 3.7 Consensus size: 38
37186641 TTCAGTGATG
37186651 TATAT-CGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
1 TATATCCGGACTTA-GGTCCGCAGGCTATGTGCTGGAAT
37186689 TATATCCGGACTTAGGTCCG-AGGCTATGTGCTGGAAT
1 TATATCCGGACTTAGGTCCGCAGGCTATGTGCTGGAAT
* *
37186726 TATATCCGGACTTAAGGTCCGCAGGCTACGTGCTGGAAA
1 TATATCCGGACTT-AGGTCCGCAGGCTATGTGCTGGAAT
* * * *
37186765 TATGTCCGGGCTAAAGTCCCGCAGGCT
1 TATATCCGGACTTAGGT-CCGCAGGCT
37186792 TCGAGCTGGT
Statistics
Matches: 93, Mismatches: 6, Indels: 7
0.88 0.06 0.07
Matches are distributed among these distances:
37 30 0.32
38 21 0.23
39 42 0.45
ACGTcount: A:0.22, C:0.22, G:0.30, T:0.26
Consensus pattern (38 bp):
TATATCCGGACTTAGGTCCGCAGGCTATGTGCTGGAAT
Found at i:37204068 original size:39 final size:39
Alignment explanation
Indices: 37204014--37204139 Score: 180
Period size: 39 Copynumber: 3.2 Consensus size: 39
37204004 TTCAGTGATG
* * *
37204014 TATATTCGGACTTAGGGTCCGCAGACTATCTGCTGGAAT
1 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
* *
37204053 TATATCCGGACTTAGGATCCGTAGGCTATGTGCTGGAAT
1 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
* *
37204092 TATATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAAA
1 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
*
37204131 TATGTCCGG
1 TATATCCGG
37204140 GCTAAAGTCC
Statistics
Matches: 77, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 77 1.00
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.29
Consensus pattern (39 bp):
TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
Found at i:37204153 original size:78 final size:78
Alignment explanation
Indices: 37204014--37204204 Score: 192
Period size: 78 Copynumber: 2.5 Consensus size: 78
37204004 TTCAGTGATG
* * * * * * *
37204014 TATATTCGGACTTAGGGTCCGCAGACTATCTGCTGGAATTATATCCGGACTTAGGATCCGTAGGC
1 TATATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAAATATATCCGGACTAAAGATCCGTAGGC
*
37204079 TAT-GTGCTGGAAT
66 T-TCGAGCTGGAAT
* *
37204092 TATATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAAATATGTCCGGGCTAAAG-TCCCGTAGG
1 TATATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAAATATATCCGGACTAAAGAT-CCGTAGG
*
37204156 CTTCGAGCTGGTAT
65 CTTCGAGCTGGAAT
** **
37204170 TATA-CCGGGTTTAAATTCCCGCAGGCT-TGTGCTGG
1 TATATCCGGACTTAAGGT-CCGCAGGCTATGTGCTGG
37204205 CAATTGGTTT
Statistics
Matches: 95, Mismatches: 15, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
77 19 0.20
78 76 0.80
ACGTcount: A:0.21, C:0.21, G:0.28, T:0.29
Consensus pattern (78 bp):
TATATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAAATATATCCGGACTAAAGATCCGTAGGC
TTCGAGCTGGAAT
Found at i:37204157 original size:39 final size:39
Alignment explanation
Indices: 37204014--37204157 Score: 139
Period size: 39 Copynumber: 3.7 Consensus size: 39
37204004 TTCAGTGATG
* ** * * * *
37204014 TATATTCGGACTTAGGGTCCGCAGACTATCTGCTGGAAT
1 TATATCCGGACTTAAAGTCCGTAGGCTATGTGCTGGAAA
* *
37204053 TATATCCGGACTT-AGGATCCGTAGGCTATGTGCTGGAAT
1 TATATCCGGACTTAAAG-TCCGTAGGCTATGTGCTGGAAA
* *
37204092 TATATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAAA
1 TATATCCGGACTTAAAGTCCGTAGGCTATGTGCTGGAAA
* *
37204131 TATGTCCGGGC-TAAAGTCCCGTAGGCT
1 TATATCCGGACTTAAAGT-CCGTAGGCT
37204158 TCGAGCTGGT
Statistics
Matches: 91, Mismatches: 11, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
38 7 0.08
39 81 0.89
40 3 0.03
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (39 bp):
TATATCCGGACTTAAAGTCCGTAGGCTATGTGCTGGAAA
Found at i:37205328 original size:12 final size:12
Alignment explanation
Indices: 37205313--37205337 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
37205303 TTTTTCTTTA
37205313 TTCTTTTATTAT
1 TTCTTTTATTAT
37205325 TTCTTTTATTAT
1 TTCTTTTATTAT
37205337 T
1 T
37205338 ATAACATATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.08, G:0.00, T:0.76
Consensus pattern (12 bp):
TTCTTTTATTAT
Found at i:37205593 original size:19 final size:20
Alignment explanation
Indices: 37205559--37205596 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
37205549 AATCCTTACA
37205559 CTAAATTAACCTTAATTAAG
1 CTAAATTAACCTTAATTAAG
*
37205579 CTAAATTTA-CTTAATTAA
1 CTAAATTAACCTTAATTAA
37205597 AATCTAATTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.45, C:0.13, G:0.03, T:0.39
Consensus pattern (20 bp):
CTAAATTAACCTTAATTAAG
Found at i:37213808 original size:39 final size:40
Alignment explanation
Indices: 37213763--37213934 Score: 222
Period size: 40 Copynumber: 4.3 Consensus size: 40
37213753 GCTCCTCGTT
* * *
37213763 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
*
37213803 C-AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * *
37213842 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * * *
37213882 CAAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGG-ATTTAGTAACTCGCA
37213922 CAAATGCCTTCGG
1 CAAATGCCTTCGG
37213935 ATCTTAGTCC
Statistics
Matches: 119, Mismatches: 11, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
39 35 0.29
40 80 0.67
41 4 0.03
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
Found at i:37213863 original size:40 final size:39
Alignment explanation
Indices: 37213765--37213987 Score: 216
Period size: 40 Copynumber: 5.6 Consensus size: 39
37213755 TCCTCGTTCA
* * * *
37213765 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* *
37213804 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
*
37213843 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* * *
37213883 AAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCAC
** * * * *
37213923 AAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
1 -AATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCAC
* *
37213964 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
37213988 CAGCATTCAA
Statistics
Matches: 157, Mismatches: 21, Indels: 11
0.83 0.11 0.06
Matches are distributed among these distances:
39 40 0.25
40 105 0.67
41 12 0.08
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.26
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
Found at i:37213947 original size:80 final size:79
Alignment explanation
Indices: 37213763--37213987 Score: 240
Period size: 80 Copynumber: 2.8 Consensus size: 79
37213753 GCTCCTCGTT
* * * * *
37213763 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGG-
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGT-ACTCGCACAAAGCCTTCGGGACTTAACCCGGA
37213827 ATTTAATAACTCGCA
65 ATTTAATAACTCGCA
* * *
37213842 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCGGGGCTTAACCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTA-CTCGCACAAA-GCCTTCGGGACTTAACCCGG
* *
37213907 AATTT-GTATCTCGCA
64 AATTTAATAACTCGCA
* * * * *
37213922 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCACAAAGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGT-AC-TCGCACAAAGCCTTCGGGACTTAACCCG
37213986 GA
63 GA
37213988 CAGCATTCAA
Statistics
Matches: 122, Mismatches: 18, Indels: 11
0.81 0.12 0.07
Matches are distributed among these distances:
78 1 0.01
79 39 0.32
80 69 0.57
81 13 0.11
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (79 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTACTCGCACAAAGCCTTCGGGACTTAACCCGGAA
TTTAATAACTCGCA
Found at i:37213996 original size:41 final size:41
Alignment explanation
Indices: 37213919--37213996 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
37213909 TTTGTATCTC
* * *
37213919 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
37213960 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
37213997 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:37215623 original size:11 final size:11
Alignment explanation
Indices: 37215607--37215646 Score: 50
Period size: 10 Copynumber: 3.8 Consensus size: 11
37215597 TAAAACCTTA
37215607 TTTTTCTTTTC
1 TTTTTCTTTTC
37215618 TTTTTC-TTTC
1 TTTTTCTTTTC
37215628 TTTTT-TTCTT-
1 TTTTTCTT-TTC
37215638 TTTTTCTTT
1 TTTTTCTTT
37215647 CCCTGTTCTG
Statistics
Matches: 26, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
10 16 0.62
11 10 0.38
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (11 bp):
TTTTTCTTTTC
Found at i:37215633 original size:12 final size:11
Alignment explanation
Indices: 37215607--37215647 Score: 55
Period size: 12 Copynumber: 3.5 Consensus size: 11
37215597 TAAAACCTTA
*
37215607 TTTTTCTTTTC
1 TTTTTCTTTTT
37215618 TTTTTCTTTCTT
1 TTTTTCTTT-TT
37215630 TTTTTCTTTTT
1 TTTTTCTTTTT
37215641 TTCTTTC
1 TT-TTTC
37215648 CCTGTTCTGT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
11 13 0.48
12 14 0.52
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (11 bp):
TTTTTCTTTTT
Found at i:37215637 original size:8 final size:8
Alignment explanation
Indices: 37215607--37215646 Score: 55
Period size: 8 Copynumber: 5.1 Consensus size: 8
37215597 TAAAACCTTA
37215607 TTTTTCTT
1 TTTTTCTT
*
37215615 TTCTT-TT
1 TTTTTCTT
*
37215622 TCTTTCTT
1 TTTTTCTT
37215630 TTTTTCTT
1 TTTTTCTT
37215638 TTTTTCTT
1 TTTTTCTT
37215646 T
1 T
37215647 CCCTGTTCTG
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
7 5 0.19
8 22 0.81
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (8 bp):
TTTTTCTT
Found at i:37219308 original size:14 final size:14
Alignment explanation
Indices: 37219289--37219316 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
37219279 TCCTCGAACG
37219289 TCAGATCCGGTCTA
1 TCAGATCCGGTCTA
37219303 TCAGATCCGGTCTA
1 TCAGATCCGGTCTA
37219317 ATCTTAATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.21, C:0.29, G:0.21, T:0.29
Consensus pattern (14 bp):
TCAGATCCGGTCTA
Found at i:37224582 original size:40 final size:40
Alignment explanation
Indices: 37224527--37224604 Score: 111
Period size: 40 Copynumber: 1.9 Consensus size: 40
37224517 TTACACCATG
* * *
37224527 TGGGGATAAAATTGACCCACCCATCCCTGCACACCATATA
1 TGGGAATAAAATTGACCCACCCAACCCTACACACCATATA
* *
37224567 TGGGAATATAATTGACCCATCCAACCCTACACACCATA
1 TGGGAATAAAATTGACCCACCCAACCCTACACACCATA
37224605 AGGTACCGCA
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 33 1.00
ACGTcount: A:0.35, C:0.32, G:0.13, T:0.21
Consensus pattern (40 bp):
TGGGAATAAAATTGACCCACCCAACCCTACACACCATATA
Found at i:37235432 original size:44 final size:42
Alignment explanation
Indices: 37235366--37235560 Score: 120
Period size: 44 Copynumber: 4.3 Consensus size: 42
37235356 ATAAGATTTG
* **
37235366 TTGTAGTTTCAATCCATTCCACTGCAACTTCAGGTATATAGGAT
1 TTGTAGCTTC-ATCCAGCCCACTGCAACTTCAGG-ATATAGGAT
* * *
37235410 TTGTAGCTTCATTCCAGCCCACTGCAACTTTATGGGTATCGGAT
1 TTGTAGCTTCA-TCCAGCCCACTGCAACTTCA-GGATATAGGAT
* ** * *
37235454 TTGTAGCTTTATCTTGCTCCACTGCAACTTCAGGGAGATAAGATT
1 TTGTAGCTTCATCCAGC-CCACTGCAACTTCA-GGATATAGGA-T
** ** *
37235499 CGCTATGATAGCTTCTATCCAATCCACTTTATCTTCAAGGATATAGGAT
1 ---T-TG-TAGCTTC-ATCCAGCCCACTGCAACTTC-AGGATATAGGAT
37235548 TTGTAGCTTCATC
1 TTGTAGCTTCATC
37235561 TTGCTCCACT
Statistics
Matches: 115, Mismatches: 25, Indels: 23
0.71 0.15 0.14
Matches are distributed among these distances:
43 8 0.07
44 69 0.60
45 5 0.04
46 1 0.01
48 1 0.01
49 3 0.03
50 24 0.21
51 4 0.03
ACGTcount: A:0.25, C:0.22, G:0.17, T:0.36
Consensus pattern (42 bp):
TTGTAGCTTCATCCAGCCCACTGCAACTTCAGGATATAGGAT
Found at i:37235555 original size:94 final size:92
Alignment explanation
Indices: 37235450--37235824 Score: 375
Period size: 94 Copynumber: 4.0 Consensus size: 92
37235440 TATGGGTATC
* * * *
37235450 GGATTTGTAGCTTTATCTTGCTCCACTGCAACTTCAGGGAGATAAGATTCGCTATGATAGCTTCT
1 GGATTTGTAGCTTTATCTTGCTCCACTACAACTTCAGGGAGATAAGATTTGATAT-ATAACTT-T
* *
37235515 ATCCAATCCACTTTATCTTCAAGGATATA
64 ATCTAATCCACTTCATCTTCAAGGATATA
* * * *
37235544 GGATTTGTAGCTTCATCTTGCTCCACTGA-AACTTTAGGGAAATAATATTTGATATTATAACTTT
1 GGATTTGTAGCTTTATCTTGCTCCACT-ACAACTTCAGGGAGATAAGATTTGATA-TATAACTTT
*
37235608 GATCTAATCCA-TTGCATCTTTAAGGATATA
64 -ATCTAATCCACTT-CATCTTCAAGGATATA
* * *
37235638 GGATTTGTAG-TTTCATCTTGCTCCACTACAACTTTAGGGAGATAAGGTTTGTTATAGTAACTTT
1 GGATTTGTAGCTTT-ATCTTGCTCCACTACAACTTCAGGGAGATAAGATTTGATATA-TAACTTT
* * * * *
37235702 ATTCTGACCCACTACAACTTC-AGTGGTATA
64 A-TCTAATCCACTTCATCTTCAAG-GATATA
* *
37235732 GAATTTGTAGCTTTATCTTGCTCCACTACAACTTCAAGGAGATAAGATTTG-TCAT-TGCAACTT
1 GGATTTGTAGCTTTATCTTGCTCCACTACAACTTCAGGGAGATAAGATTTGAT-ATAT--AACTT
* *
37235795 TGATCCAATCCACTGCATCTTCAAGGATAT
63 T-ATCTAATCCACTTCATCTTCAAGGATAT
37235825 GGGAGTCACT
Statistics
Matches: 233, Mismatches: 32, Indels: 32
0.78 0.11 0.11
Matches are distributed among these distances:
92 1 0.00
93 12 0.05
94 212 0.91
95 8 0.03
ACGTcount: A:0.28, C:0.19, G:0.16, T:0.37
Consensus pattern (92 bp):
GGATTTGTAGCTTTATCTTGCTCCACTACAACTTCAGGGAGATAAGATTTGATATATAACTTTAT
CTAATCCACTTCATCTTCAAGGATATA
Found at i:37235782 original size:44 final size:44
Alignment explanation
Indices: 37235451--37235783 Score: 119
Period size: 44 Copynumber: 7.2 Consensus size: 44
37235441 ATGGGTATCG
* *
37235451 GATTTGTAGCTTTATCTTGCTCCACTGCAACTTCAGGGAGATAA
1 GATTTGTAGCTTTATCTTGCTCCACTACAACTTCAAGGAGATAA
*** ** * * *
37235495 GATTCGCTATGATAGCTTCTATC-CAATCCACTTTATCTTCAAGGATATAG
1 GA-T---T-TG-TAGCTT-TATCTTGCTCCACTACAACTTCAAGGAGATAA
* * * *
37235545 GATTTGTAGCTTCATCTTGCTCCACTGA-AACTTTAGGGAAATAA
1 GATTTGTAGCTTTATCTTGCTCCACT-ACAACTTCAAGGAGATAA
* * * * * * * *
37235589 TATTTGATA--TTATAACTTTGATCTAATCCATTGCATCTTTAAGGATATAG
1 GATTTG-TAGCTT-TATC-TTG--C---TCCACTACAACTTCAAGGAGATAA
* *
37235639 GATTTGTAG-TTTCATCTTGCTCCACTACAACTTTAGGGAGATAA
1 GATTTGTAGCTTT-ATCTTGCTCCACTACAACTTCAAGGAGATAA
*
37235683 GGTTTGTTATAGTAACTTTAT-TCTGAC-CCACTACAACTTC-AGTG-G-TATA
1 GATTTG---TAG---CTTTATCT-TG-CTCCACTACAACTTCAAG-GAGATA-A
37235732 GAATTTGTAGCTTTATCTTGCTCCACTACAACTTCAAGGAGATAA
1 G-ATTTGTAGCTTTATCTTGCTCCACTACAACTTCAAGGAGATAA
37235777 GATTTGT
1 GATTTGT
37235784 CATTGCAACT
Statistics
Matches: 212, Mismatches: 40, Indels: 74
0.65 0.12 0.23
Matches are distributed among these distances:
43 6 0.03
44 83 0.39
45 14 0.07
46 3 0.01
47 8 0.04
48 3 0.01
49 14 0.07
50 73 0.34
51 8 0.04
ACGTcount: A:0.28, C:0.18, G:0.17, T:0.37
Consensus pattern (44 bp):
GATTTGTAGCTTTATCTTGCTCCACTACAACTTCAAGGAGATAA
Found at i:37245379 original size:17 final size:17
Alignment explanation
Indices: 37245357--37245394 Score: 76
Period size: 17 Copynumber: 2.2 Consensus size: 17
37245347 CAGTCGGAAT
37245357 ATCCCTGAACACTTCCA
1 ATCCCTGAACACTTCCA
37245374 ATCCCTGAACACTTCCA
1 ATCCCTGAACACTTCCA
37245391 ATCC
1 ATCC
37245395 TATGGCATGC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.29, C:0.42, G:0.05, T:0.24
Consensus pattern (17 bp):
ATCCCTGAACACTTCCA
Found at i:37246206 original size:18 final size:18
Alignment explanation
Indices: 37246180--37246218 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
37246170 TCTGTTTCGT
37246180 TTTCATTCTTTCT-TTTTA
1 TTTCATTCTTT-TATTTTA
*
37246198 TTTCTTTCTTTTATTTTA
1 TTTCATTCTTTTATTTTA
37246216 TTT
1 TTT
37246219 AATTACTTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 1 0.05
18 18 0.95
ACGTcount: A:0.10, C:0.13, G:0.00, T:0.77
Consensus pattern (18 bp):
TTTCATTCTTTTATTTTA
Found at i:37246210 original size:13 final size:14
Alignment explanation
Indices: 37246185--37246213 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
37246175 TTCGTTTTCA
37246185 TTCTTTCTTTTTAT
1 TTCTTTCTTTTTAT
37246199 TTCTTTC-TTTTAT
1 TTCTTTCTTTTTAT
37246212 TT
1 TT
37246214 TATTTAATTA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.53
14 7 0.47
ACGTcount: A:0.07, C:0.14, G:0.00, T:0.79
Consensus pattern (14 bp):
TTCTTTCTTTTTAT
Found at i:37250322 original size:19 final size:19
Alignment explanation
Indices: 37250300--37250338 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
37250290 AACCAAACTA
37250300 GCAAGAGCTATGCAAAACC
1 GCAAGAGCTATGCAAAACC
37250319 GCAAGAGCTATGCAAAACC
1 GCAAGAGCTATGCAAAACC
37250338 G
1 G
37250339 ATTAATCTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.41, C:0.26, G:0.23, T:0.10
Consensus pattern (19 bp):
GCAAGAGCTATGCAAAACC
Done.