Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100714657
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 3970000 characters in sequence are not A, C, G, or T
File 145 of 318
Found at i:45047751 original size:22 final size:21
Alignment explanation
Indices: 45047720--45047761 Score: 66
Period size: 22 Copynumber: 2.0 Consensus size: 21
45047710 TAGATTATAT
*
45047720 ATGTTAATTTGTTTGAATTGA
1 ATGTTAATTTGTGTGAATTGA
45047741 ATGTTGAATTTGTGTGAATTG
1 ATGTT-AATTTGTGTGAATTG
45047762 CATAAATTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 5 0.26
22 14 0.74
ACGTcount: A:0.26, C:0.00, G:0.24, T:0.50
Consensus pattern (21 bp):
ATGTTAATTTGTGTGAATTGA
Found at i:45053105 original size:44 final size:43
Alignment explanation
Indices: 45053042--45053200 Score: 164
Period size: 43 Copynumber: 3.7 Consensus size: 43
45053032 TATGTGTTAT
* *
45053042 CGTGTAAGACCACATCTGGGACGTTGGCATCA-ACTTATGATTTA
1 CGTGTAAGACCACGTCTAGGACGTTGGCATCATA-TT-TGATTTA
* * *
45053086 CGTGTAAGACTATGTCTGGGACGTTGGCATCATATTTGATTT-
1 CGTGTAAGACCACGTCTAGGACGTTGGCATCATATTTGATTTA
* ** *
45053128 CGTGTTAGACCTTGTTTAGGACAG-TGGCATCGATATTTGA-TTA
1 CGTGTAAGACCACGTCTAGGAC-GTTGGCATC-ATATTTGATTTA
*
45053171 CATGTAAGACCACGTCTAGGACGTTGGCAT
1 CGTGTAAGACCACGTCTAGGACGTTGGCAT
45053201 TGTACGAGAT
Statistics
Matches: 97, Mismatches: 13, Indels: 11
0.80 0.11 0.09
Matches are distributed among these distances:
42 27 0.28
43 38 0.39
44 31 0.32
45 1 0.01
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.33
Consensus pattern (43 bp):
CGTGTAAGACCACGTCTAGGACGTTGGCATCATATTTGATTTA
Found at i:45059922 original size:16 final size:19
Alignment explanation
Indices: 45059901--45059941 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
45059891 TAATAGGACC
45059901 ATTTTGT-AAA-AA-GGAA
1 ATTTTGTAAAATAATGGAA
45059917 ATTTTGTAAAATAATGGAA
1 ATTTTGTAAAATAATGGAA
45059936 ATTTTG
1 ATTTTG
45059942 GGTTGCTATA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.32
17 3 0.14
18 2 0.09
19 10 0.45
ACGTcount: A:0.44, C:0.00, G:0.17, T:0.39
Consensus pattern (19 bp):
ATTTTGTAAAATAATGGAA
Found at i:45060620 original size:49 final size:49
Alignment explanation
Indices: 45060567--45060675 Score: 118
Period size: 49 Copynumber: 2.2 Consensus size: 49
45060557 TGTCTCAGAC
*
45060567 ATGGCATCGACAC-CGATA-GATGAGAGCCAGTGTAAGACCTA-CTTGGGAA
1 ATGGCATCGAC-CTCGATATG-TGAAAGCCAGTGTAAGACCTATC-TGGGAA
** *
45060616 ATGGCATC-AGCCTCGATATGTGAAAGTTAGTGTAAGACCTATCTGGGAC
1 ATGGCATCGA-CCTCGATATGTGAAAGCCAGTGTAAGACCTATCTGGGAA
45060665 ATGGCATCGAC
1 ATGGCATCGAC
45060676 TTTGATGTGC
Statistics
Matches: 51, Mismatches: 4, Indels: 10
0.78 0.06 0.15
Matches are distributed among these distances:
48 2 0.04
49 46 0.90
50 3 0.06
ACGTcount: A:0.30, C:0.20, G:0.28, T:0.22
Consensus pattern (49 bp):
ATGGCATCGACCTCGATATGTGAAAGCCAGTGTAAGACCTATCTGGGAA
Found at i:45063804 original size:42 final size:42
Alignment explanation
Indices: 45063700--45063864 Score: 181
Period size: 43 Copynumber: 3.9 Consensus size: 42
45063690 ATATGTGTTA
*
45063700 TCGTGTAAGACCACGTCTGGGACATTGGCATCG-ACTTATAATT
1 TCGTGTAAGACCACGTCTGGGACATTGGCATCGTA-TT-TGATT
*
45063743 TACGTGTAAGACCATGTCTGGGACATTGGCATCGTATTTGATT
1 T-CGTGTAAGACCACGTCTGGGACATTGGCATCGTATTTGATT
* * *
45063786 TCGTGTAAGACC-CTGTCTGGGATAGTAGCATCGATATTTGATT
1 TCGTGTAAGACCAC-GTCTGGGACATTGGCATCG-TATTTGATT
* * * * *
45063829 ACATGTAAGACCACGTCTAGGACGTTGGCATTGTAT
1 TCGTGTAAGACCACGTCTGGGACATTGGCATCGTAT
45063865 GAGACCACCA
Statistics
Matches: 103, Mismatches: 14, Indels: 11
0.80 0.11 0.09
Matches are distributed among these distances:
42 30 0.29
43 38 0.37
44 34 0.33
45 1 0.01
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.32
Consensus pattern (42 bp):
TCGTGTAAGACCACGTCTGGGACATTGGCATCGTATTTGATT
Found at i:45063838 original size:43 final size:42
Alignment explanation
Indices: 45063701--45063851 Score: 151
Period size: 44 Copynumber: 3.5 Consensus size: 42
45063691 TATGTGTTAT
* * * *
45063701 CGTGTAAGACCACGTCTGGGACATTGGCATCG-ACTTATAATTTA
1 CGTGTAAGACCATGTCTGGGACAGTAGCATCGTA-TT-TGA-TTA
* * *
45063745 CGTGTAAGACCATGTCTGGGACATTGGCATCGTATTTGATTT
1 CGTGTAAGACCATGTCTGGGACAGTAGCATCGTATTTGATTA
* *
45063787 CGTGTAAGACCCTGTCTGGGATAGTAGCATCGATATTTGATTA
1 CGTGTAAGACCATGTCTGGGACAGTAGCATCG-TATTTGATTA
* * *
45063830 CATGTAAGACCACGTCTAGGAC
1 CGTGTAAGACCATGTCTGGGAC
45063852 GTTGGCATTG
Statistics
Matches: 92, Mismatches: 13, Indels: 5
0.84 0.12 0.05
Matches are distributed among these distances:
42 30 0.33
43 28 0.30
44 33 0.36
45 1 0.01
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (42 bp):
CGTGTAAGACCATGTCTGGGACAGTAGCATCGTATTTGATTA
Found at i:45064084 original size:21 final size:17
Alignment explanation
Indices: 45064041--45064073 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
45064031 AAATAAAATA
45064041 CAAATAAACTTATCATT
1 CAAATAAACTTATCATT
45064058 CAAATAAACTTATCAT
1 CAAATAAACTTATCAT
45064074 GTAATCAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.48, C:0.18, G:0.00, T:0.33
Consensus pattern (17 bp):
CAAATAAACTTATCATT
Found at i:45065744 original size:46 final size:46
Alignment explanation
Indices: 45065596--45065763 Score: 198
Period size: 46 Copynumber: 3.6 Consensus size: 46
45065586 TTTGTGTGCT
* * * *
45065596 AGTGTAAGACATGTCTGGGACATACATCGGCCAC-ATTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGACCTCGA-GATGAGAGCC
* * *
45065642 AGTGTAAGACCATGTCTGGGACATGGCAAT-GACATTGAGATGAGAGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GC-ATCGACCTCGAGATGAGAGCC
*
45065690 AGTGTAAGACATGTCTGGGACATGCATCGACCTCGAGATGTA-AACC
1 AGTGTAAGACATGTCTGGGACATGCATCGACCTCGAGATG-AGAGCC
45065736 AGTGTAAGACATGTCTGGGACATGCATC
1 AGTGTAAGACATGTCTGGGACATGCATC
45065764 AGCTACAAAA
Statistics
Matches: 105, Mismatches: 11, Indels: 12
0.82 0.09 0.09
Matches are distributed among these distances:
45 2 0.02
46 51 0.49
47 29 0.28
48 20 0.19
49 3 0.03
ACGTcount: A:0.30, C:0.19, G:0.28, T:0.23
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGACCTCGAGATGAGAGCC
Found at i:45073299 original size:42 final size:42
Alignment explanation
Indices: 45073238--45073331 Score: 102
Period size: 42 Copynumber: 2.2 Consensus size: 42
45073228 TCTAGCTATG
* *
45073238 GTCTTACACGAAATTTCATA-TCGATGCCATGTCCCAAACATA
1 GTCTTACACGAAATATCATACT-GATGCCATATCCCAAACATA
* * * *
45073280 GTCTTACAC-ATAATATCATACTGATGTCATATCCCAGATATG
1 GTCTTACACGA-AATATCATACTGATGCCATATCCCAAACATA
45073322 GTCTTACACG
1 GTCTTACACG
45073332 TATTCTCATC
Statistics
Matches: 43, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
41 1 0.02
42 41 0.95
43 1 0.02
ACGTcount: A:0.32, C:0.24, G:0.13, T:0.31
Consensus pattern (42 bp):
GTCTTACACGAAATATCATACTGATGCCATATCCCAAACATA
Found at i:45074905 original size:8 final size:8
Alignment explanation
Indices: 45074878--45074925 Score: 53
Period size: 8 Copynumber: 6.0 Consensus size: 8
45074868 GTAACTTGAC
45074878 AAAAAATT
1 AAAAAATT
* **
45074886 TAAATTTT
1 AAAAAATT
45074894 AAAAAATT
1 AAAAAATT
45074902 AAAAAATT
1 AAAAAATT
45074910 -AAAAATT
1 AAAAAATT
45074917 AAAATAATT
1 AAAA-AATT
45074926 TTTTTTATAA
Statistics
Matches: 32, Mismatches: 6, Indels: 3
0.78 0.15 0.07
Matches are distributed among these distances:
7 7 0.22
8 21 0.66
9 4 0.12
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (8 bp):
AAAAAATT
Found at i:45074913 original size:15 final size:16
Alignment explanation
Indices: 45074895--45074925 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
45074885 TTAAATTTTA
45074895 AAAAATTAAAA-AATT
1 AAAAATTAAAATAATT
45074910 AAAAATTAAAATAATT
1 AAAAATTAAAATAATT
45074926 TTTTTTATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 11 0.73
16 4 0.27
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (16 bp):
AAAAATTAAAATAATT
Found at i:45076621 original size:19 final size:19
Alignment explanation
Indices: 45076597--45076635 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
45076587 GATTAACGTT
45076597 AGTTAATTATA-ATTAATTA
1 AGTTAATTA-AGATTAATTA
45076616 AGTTAATTAAGATTAATTA
1 AGTTAATTAAGATTAATTA
45076635 A
1 A
45076636 TTATTAATAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 1 0.05
19 18 0.95
ACGTcount: A:0.49, C:0.00, G:0.08, T:0.44
Consensus pattern (19 bp):
AGTTAATTAAGATTAATTA
Found at i:45078919 original size:13 final size:13
Alignment explanation
Indices: 45078880--45078943 Score: 60
Period size: 13 Copynumber: 4.9 Consensus size: 13
45078870 AGTTCTTCAT
45078880 TGCTTTTGAAAAG
1 TGCTTTTGAAAAG
*
45078893 TG-TTGTGTAAAAG
1 TGCTTTTG-AAAAG
*
45078906 TGCTTTTGAGAAG
1 TGCTTTTGAAAAG
* *
45078919 TACTTTTGAGAAG
1 TGCTTTTGAAAAG
45078932 TG-TTTTGGAAAA
1 TGCTTTT-GAAAA
45078944 ATTTAAGTGT
Statistics
Matches: 42, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
12 8 0.19
13 30 0.71
14 4 0.10
ACGTcount: A:0.30, C:0.05, G:0.27, T:0.39
Consensus pattern (13 bp):
TGCTTTTGAAAAG
Found at i:45091545 original size:19 final size:18
Alignment explanation
Indices: 45091505--45091547 Score: 50
Period size: 19 Copynumber: 2.3 Consensus size: 18
45091495 CACATCTTTG
* *
45091505 AGCTCACCCAAAGATGCA
1 AGCTCACCAAAAAATGCA
*
45091523 AGCTCACCAAAAAAATGCC
1 AGCTCACC-AAAAAATGCA
45091542 AGCTCA
1 AGCTCA
45091548 TTAGATGTGC
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
18 8 0.38
19 13 0.62
ACGTcount: A:0.42, C:0.33, G:0.14, T:0.12
Consensus pattern (18 bp):
AGCTCACCAAAAAATGCA
Found at i:45091630 original size:17 final size:17
Alignment explanation
Indices: 45091591--45091641 Score: 59
Period size: 17 Copynumber: 3.0 Consensus size: 17
45091581 ACAAAAAATA
45091591 TGAGCTCAACAAA-TCTG
1 TGAGCTCAACAAAGT-TG
* *
45091608 TAAGCTCATCAAAGTTG
1 TGAGCTCAACAAAGTTG
*
45091625 TGAGCTCACCAAAGTTG
1 TGAGCTCAACAAAGTTG
45091642 CAAAGTCACT
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
17 28 0.97
18 1 0.03
ACGTcount: A:0.33, C:0.22, G:0.20, T:0.25
Consensus pattern (17 bp):
TGAGCTCAACAAAGTTG
Found at i:45093037 original size:39 final size:38
Alignment explanation
Indices: 45092962--45093038 Score: 100
Period size: 39 Copynumber: 2.0 Consensus size: 38
45092952 AAGCTCACTA
* * * * *
45092962 CCAGATGCGAAGACCGTTCGTTGCCCCATGTGAACCCT
1 CCAGATGCGAAAACCATTCGCTACCCCATGTAAACCCT
45093000 CCAGATGCGAAAACCAATTCGCTACCCCATGTAAACCCT
1 CCAGATGCGAAAACC-ATTCGCTACCCCATGTAAACCCT
45093039 TCAGCAAAGA
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
38 14 0.42
39 19 0.58
ACGTcount: A:0.27, C:0.35, G:0.18, T:0.19
Consensus pattern (38 bp):
CCAGATGCGAAAACCATTCGCTACCCCATGTAAACCCT
Found at i:45096073 original size:49 final size:49
Alignment explanation
Indices: 45096020--45096113 Score: 125
Period size: 49 Copynumber: 1.9 Consensus size: 49
45096010 GTTCTGAATA
** * *
45096020 GTTGGAAATGGTTGGGTTTGATACCTGAGAAATGGTGTTTGAAATAATG
1 GTTGGAAATGAATGGGCTTGATACCTAAGAAATGGTGTTTGAAATAATG
** *
45096069 GTTGGATTTGAATGTGCTTGATACCTAAGAAATGGTGTTTGAAAT
1 GTTGGAAATGAATGGGCTTGATACCTAAGAAATGGTGTTTGAAAT
45096114 TGTCTAATGA
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
49 38 1.00
ACGTcount: A:0.29, C:0.05, G:0.30, T:0.36
Consensus pattern (49 bp):
GTTGGAAATGAATGGGCTTGATACCTAAGAAATGGTGTTTGAAATAATG
Found at i:45102405 original size:43 final size:43
Alignment explanation
Indices: 45102344--45102430 Score: 147
Period size: 43 Copynumber: 2.0 Consensus size: 43
45102334 AAATTACATG
*
45102344 TGTCACATACATCATGAACTCAGACCAACTTAATGAGCTCAGA
1 TGTCACATACATCATGAACTCAGACCAACTCAATGAGCTCAGA
* *
45102387 TGTCACATATATCATGAACTCAGACCAACTCAATGAGTTCAGA
1 TGTCACATACATCATGAACTCAGACCAACTCAATGAGCTCAGA
45102430 T
1 T
45102431 CATATAATTT
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 41 1.00
ACGTcount: A:0.37, C:0.24, G:0.14, T:0.25
Consensus pattern (43 bp):
TGTCACATACATCATGAACTCAGACCAACTCAATGAGCTCAGA
Found at i:45112691 original size:25 final size:26
Alignment explanation
Indices: 45112638--45112723 Score: 99
Period size: 25 Copynumber: 3.4 Consensus size: 26
45112628 TATGGCTCTT
*
45112638 ATGAGCTTCCCATTACA-CAGCTCGA-
1 ATGAGCTTCCCATTACATGA-CTCGAC
45112663 ATGAGCTTCCCATTACATGACTC-AC
1 ATGAGCTTCCCATTACATGACTCGAC
* * *
45112688 ATGAGCTTCCTATTATATGGCTCGAC
1 ATGAGCTTCCCATTACATGACTCGAC
45112714 A-GAGCTTCCC
1 ATGAGCTTCCC
45112724 GTTAGTGTGT
Statistics
Matches: 53, Mismatches: 5, Indels: 6
0.83 0.08 0.09
Matches are distributed among these distances:
24 1 0.02
25 48 0.91
26 4 0.08
ACGTcount: A:0.26, C:0.30, G:0.16, T:0.28
Consensus pattern (26 bp):
ATGAGCTTCCCATTACATGACTCGAC
Found at i:45115113 original size:17 final size:17
Alignment explanation
Indices: 45115079--45115138 Score: 50
Period size: 17 Copynumber: 3.5 Consensus size: 17
45115069 ATGTGCGAGG
*
45115079 TCACCAAAGATACTAGC
1 TCACCAAAGATACAAGC
**
45115096 TCACCAAATCTACAAGC
1 TCACCAAAGATACAAGC
* * *
45115113 TCATCAAACG-TGCGAGC
1 TCACCAAA-GATACAAGC
45115130 TCACCAAAG
1 TCACCAAAG
45115139 TTGTGAGTGT
Statistics
Matches: 34, Mismatches: 8, Indels: 3
0.76 0.18 0.07
Matches are distributed among these distances:
16 1 0.03
17 33 0.97
ACGTcount: A:0.38, C:0.32, G:0.13, T:0.17
Consensus pattern (17 bp):
TCACCAAAGATACAAGC
Found at i:45116689 original size:22 final size:22
Alignment explanation
Indices: 45116658--45116700 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
45116648 GTATTGAGTA
45116658 AAAAAAATATAACGTGATTTAC
1 AAAAAAATATAACGTGATTTAC
*
45116680 AAAAATATATAACGTGATTTA
1 AAAAAAATATAACGTGATTTA
45116701 TAGTAAAACA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.53, C:0.07, G:0.09, T:0.30
Consensus pattern (22 bp):
AAAAAAATATAACGTGATTTAC
Found at i:45116923 original size:15 final size:15
Alignment explanation
Indices: 45116888--45116917 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
45116878 AAATAAAAAT
45116888 AAATAAAACATGACA
1 AAATAAAACATGACA
45116903 AAATAAAA-ATGACA
1 AAATAAAACATGACA
45116917 A
1 A
45116918 TGATAACGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 7 0.47
15 8 0.53
ACGTcount: A:0.70, C:0.10, G:0.07, T:0.13
Consensus pattern (15 bp):
AAATAAAACATGACA
Found at i:45117149 original size:24 final size:24
Alignment explanation
Indices: 45117122--45117199 Score: 63
Period size: 27 Copynumber: 3.2 Consensus size: 24
45117112 AATAACTAAT
45117122 AATAATGATATATAAATATATACA
1 AATAATGATATATAAATATATACA
*
45117146 AAT-ATG-TAT-TAAAATATATACGC
1 AATAATGATATAT-AAATATATAC-A
* *
45117169 AATAATAGAAATAAAAAATATATACA
1 AATAAT-GATAT-ATAAATATATACA
45117195 TAATA
1 -AATA
45117200 TATACATACT
Statistics
Matches: 42, Mismatches: 4, Indels: 13
0.71 0.07 0.22
Matches are distributed among these distances:
21 1 0.02
22 13 0.31
23 6 0.14
24 5 0.12
25 1 0.02
26 2 0.05
27 14 0.33
ACGTcount: A:0.59, C:0.05, G:0.05, T:0.31
Consensus pattern (24 bp):
AATAATGATATATAAATATATACA
Found at i:45117537 original size:25 final size:23
Alignment explanation
Indices: 45117492--45117606 Score: 105
Period size: 25 Copynumber: 5.0 Consensus size: 23
45117482 ACATGGGATA
* *
45117492 ATATAAAAAATATATGAATAATGT
1 ATATTAAAAATATAT-AATAATAT
*
45117516 GATATTAAAAATATATACATAA-AA
1 -ATATTAAAAATATATA-ATAATAT
*
45117540 ATA-TAATAATA-ATAATAATAT
1 ATATTAAAAATATATAATAATAT
45117561 ATA-TATAAAATATATACATAATAT
1 ATATTA-AAAATATATA-ATAATAT
45117585 AGTATTAAAAATATAT-ATAATA
1 A-TATTAAAAATATATAATAATA
45117607 CATACACATT
Statistics
Matches: 77, Mismatches: 6, Indels: 16
0.78 0.06 0.16
Matches are distributed among these distances:
20 4 0.05
21 9 0.12
22 12 0.16
23 12 0.16
24 9 0.12
25 29 0.38
26 2 0.03
ACGTcount: A:0.60, C:0.02, G:0.03, T:0.35
Consensus pattern (23 bp):
ATATTAAAAATATATAATAATAT
Found at i:45117538 original size:14 final size:14
Alignment explanation
Indices: 45117521--45117581 Score: 70
Period size: 14 Copynumber: 4.2 Consensus size: 14
45117511 AATGTGATAT
45117521 TAAAAATATATACA
1 TAAAAATATATACA
45117535 TAAAAATATAATA-A
1 TAAAAATAT-ATACA
* *
45117549 TAATAATAATATATA
1 TAAAAAT-ATATACA
45117564 TATAAAATATATACA
1 TA-AAAATATATACA
45117579 TAA
1 TAA
45117582 TATAGTATTA
Statistics
Matches: 40, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
14 20 0.50
15 16 0.40
16 4 0.10
ACGTcount: A:0.64, C:0.03, G:0.00, T:0.33
Consensus pattern (14 bp):
TAAAAATATATACA
Found at i:45117568 original size:11 final size:11
Alignment explanation
Indices: 45117525--45117606 Score: 55
Period size: 11 Copynumber: 7.4 Consensus size: 11
45117515 TGATATTAAA
*
45117525 AATATATACAT
1 AATATATATAT
*
45117536 AA-AAATATAAT
1 AATATATAT-AT
45117547 AATA-ATA-AT
1 AATATATATAT
45117556 AATATATATAT
1 AATATATATAT
*
45117567 AAAATATATACAT
1 --AATATATATAT
45117580 AATATAGTAT-T
1 AATATA-TATAT
*
45117591 AAAAATATATAT
1 -AATATATATAT
45117603 AATA
1 AATA
45117607 CATACACATT
Statistics
Matches: 56, Mismatches: 6, Indels: 18
0.70 0.08 0.22
Matches are distributed among these distances:
9 6 0.11
10 7 0.12
11 24 0.43
12 9 0.16
13 10 0.18
ACGTcount: A:0.61, C:0.02, G:0.01, T:0.35
Consensus pattern (11 bp):
AATATATATAT
Found at i:45117713 original size:23 final size:23
Alignment explanation
Indices: 45117668--45117713 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
45117658 AATACTTCAT
* *
45117668 AAATATATACATATATATGTTAA
1 AAATAAATACATATATATATTAA
45117691 AAATAAATACATAT-TAATATTAA
1 AAATAAATACATATAT-ATATTAA
45117714 GATGATGATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 1 0.05
23 19 0.95
ACGTcount: A:0.57, C:0.04, G:0.02, T:0.37
Consensus pattern (23 bp):
AAATAAATACATATATATATTAA
Found at i:45120880 original size:49 final size:48
Alignment explanation
Indices: 45120789--45120881 Score: 123
Period size: 49 Copynumber: 1.9 Consensus size: 48
45120779 TATTCTACCT
* **
45120789 AAAAGGAAAGAGGCCAAGGTGAAAACCCACAAAGGGTGCCTTGAAAAA
1 AAAAGGAAAGAGGCCAAGGCGAAAACCCACAAAGGGCACCTTGAAAAA
* * *
45120837 AAAAGGAGGAGAGGCCATGGCGAAAACCCGCAAAGGGCACCTTGA
1 AAAAGGA-AAGAGGCCAAGGCGAAAACCCACAAAGGGCACCTTGA
45120882 GACCAAAGGG
Statistics
Matches: 38, Mismatches: 6, Indels: 1
0.84 0.13 0.02
Matches are distributed among these distances:
48 7 0.18
49 31 0.82
ACGTcount: A:0.43, C:0.19, G:0.30, T:0.08
Consensus pattern (48 bp):
AAAAGGAAAGAGGCCAAGGCGAAAACCCACAAAGGGCACCTTGAAAAA
Found at i:45122265 original size:87 final size:87
Alignment explanation
Indices: 45122167--45122579 Score: 501
Period size: 87 Copynumber: 4.7 Consensus size: 87
45122157 AATTTTGTCT
* * * *
45122167 CCCTAAGCAGTAGTGG-AGCAGATCGAAAACGAAGGGCCTT-AACCCCACAAGTAGTAGGGTAAC
1 CCCTAAGCAGTAG-GGAAACAGATCGAAGACGAAGGGCCTTAAACCCC-TAAGCAGTAGGGTAAC
** *
45122230 AGGCTAAATTTACAGATCTTGTCT
64 AGGCTAAATTTACAGATCTTAACC
* * * * * *
45122254 CCCTAAGCAGTA-GTAGAGCAAATCGAAGACAAAGAGCCTTAAACCCCTAAGGAGTAGGGTAACA
1 CCCTAAGCAGTAGGGA-AACAGATCGAAGACGAAGGGCCTTAAACCCCTAAGCAGTAGGGTAACA
* *
45122318 GGCTGAATTCACAGATCTTAACC
65 GGCTAAATTTACAGATCTTAACC
* * * *
45122341 CCCTAAGCAGTAGGGAAACAGATCGAAGGCGATGGGCCTTAAACCCCTAAGCAGCAGGGTAACAA
1 CCCTAAGCAGTAGGGAAACAGATCGAAGACGAAGGGCCTTAAACCCCTAAGCAGTAGGGTAACAG
45122406 GCTAAATTTACAGATCTTAACC
66 GCTAAATTTACAGATCTTAACC
* *
45122428 CCCTAAGCAGTAGGGAAACAGATCGAAGGCGATGGGCCTTAAACCCCTAAGCAGTAGGGTAACAG
1 CCCTAAGCAGTAGGGAAACAGATCGAAGACGAAGGGCCTTAAACCCCTAAGCAGTAGGGTAACAG
45122493 GCTAAATTTACAGATCTTAACC
66 GCTAAATTTACAGATCTTAACC
* * ** * ** *
45122515 CCCTAAGTAGTAGGGAAACAAATCGAAGGTGATGGATCTT-AACCTCCTAAGCAGTAGGGAAACA
1 CCCTAAGCAGTAGGGAAACAGATCGAAGACGAAGGGCCTTAAACC-CCTAAGCAGTAGGGTAACA
45122579 G
65 G
45122580 ATCGAAGGCA
Statistics
Matches: 289, Mismatches: 32, Indels: 10
0.87 0.10 0.03
Matches are distributed among these distances:
85 1 0.00
86 4 0.01
87 276 0.96
88 8 0.03
ACGTcount: A:0.36, C:0.22, G:0.24, T:0.18
Consensus pattern (87 bp):
CCCTAAGCAGTAGGGAAACAGATCGAAGACGAAGGGCCTTAAACCCCTAAGCAGTAGGGTAACAG
GCTAAATTTACAGATCTTAACC
Found at i:45122485 original size:131 final size:130
Alignment explanation
Indices: 45122334--45122884 Score: 439
Period size: 131 Copynumber: 4.2 Consensus size: 130
45122324 ATTCACAGAT
* * *** ** * *
45122334 CTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGGCGATGGGCCTTAAACCCCTAAGCAGCAGG
1 CTTAAACCCCTAAGCAGTAGGGAAACAG-GCGAAATTGACAGACCTTAAACCCCTAAGCAGTAGG
* * * * *
45122399 GTAACAAGCTAAATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGGCGATGGG
65 GAAACAAGCGAAAGTGACAGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGGCGATAGG
45122464 C
130 C
* * * * * *
45122465 CTTAAACCCCTAAGCAGTAGGGTAACAGGCTAAATTTACAGATCTTAACCCCCTAAGTAGTAGGG
1 CTTAAACCCCTAAGCAGTAGGGAAACAGGCGAAATTGACAGACCTTAAACCCCTAAGCAGTAGGG
* * ** * * *
45122530 AAACAAATCGAAGGTGATGGATCTTAACCTCCTAAGCAGTAGGGAAACAGATCGAAGGCAATGGG
66 AAAC-AAGCGAAAGTGACAGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGGCGATAGG
45122595 C
130 C
* * * * *
45122596 CTTAAACCCCTAAGCAGTAGGGTAACAGGCTAAATTTACAGATCTTAACCCCCTAAGCAGTAGGG
1 CTTAAACCCCTAAGCAGTAGGGAAACAGGCGAAATTGACAGACCTTAAACCCCTAAGCAGTAGGG
* * * ** ** * * * *** *
45122661 AAACAGATCGAAGGCGATGGGCCTTAAACCCCTAAGCAGTAGGGTAACA-AGCTGAA-TTTACAG
66 AAACA-AGCGAAAGTGACAGATCTTAACCCCCTAAGCAGTAGGGAAACAGATC-GAAGGCGATAG
**
45122724 AT
129 GC
* * ** * *
45122726 CTT-AACCCCCAAGCAGTAGGGAAACAGATCGAAGA-TGATGGGCCTTAAACCACTAAGCAGTAG
1 CTTAAACCCCTAAGCAGTAGGGAAACAG-GCGAA-ATTGACAGACCTTAAACCCCTAAGCAGTAG
* * * * * *
45122789 GGTAAC-AG-GATGAATTTACAGATCTTATCACCCTAAGCAGTAGGGAAACAGAACGAAGGCGAT
64 GGAAACAAGCGA--AAGTGACAGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGGCGAT
*
45122852 AAGC
127 AGGC
45122856 CTTAAACCCCTAAGCAGTAGGGAAACAGG
1 CTTAAACCCCTAAGCAGTAGGGAAACAGG
45122885 TTGAATTACA
Statistics
Matches: 335, Mismatches: 75, Indels: 21
0.78 0.17 0.05
Matches are distributed among these distances:
127 2 0.01
128 1 0.00
129 51 0.15
130 71 0.21
131 210 0.63
ACGTcount: A:0.36, C:0.22, G:0.24, T:0.18
Consensus pattern (130 bp):
CTTAAACCCCTAAGCAGTAGGGAAACAGGCGAAATTGACAGACCTTAAACCCCTAAGCAGTAGGG
AAACAAGCGAAAGTGACAGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGGCGATAGGC
Found at i:45122556 original size:218 final size:217
Alignment explanation
Indices: 45122331--45122796 Score: 797
Period size: 218 Copynumber: 2.1 Consensus size: 217
45122321 TGAATTCACA
*
45122331 GATCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGGCGATGGGCCTTAAACCCCTAAGCAGC
1 GATCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGGCAATGGGCCTTAAACCCCTAAGCAGC
45122396 AGGGTAACAAGCTAAATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGGCGAT
66 AGGGTAACAAGCTAAATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGGCGAT
* *
45122461 GGGCCTTAAACCCCTAAGCAGTAGGGTAACAGGCTAAATTTACAGATCTTAACCCCCTAAGTAGT
131 GGGCCTTAAACCCCTAAGCAGTAGGGTAACAAGCTAAATTTACAGATCTTAACCCCC-AAGCAGT
*
45122526 AGGGAAACAAATCGAAGGTGATG
195 AGGGAAACAAATCGAAGATGATG
* *
45122549 GATCTTAACCTCCTAAGCAGTAGGGAAACAGATCGAAGGCAATGGGCCTTAAACCCCTAAGCAGT
1 GATCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGGCAATGGGCCTTAAACCCCTAAGCAGC
*
45122614 AGGGTAACAGGCTAAATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGGCGAT
66 AGGGTAACAAGCTAAATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGGCGAT
*
45122679 GGGCCTTAAACCCCTAAGCAGTAGGGTAACAAGCTGAATTTACAGATCTTAACCCCCAAGCAGTA
131 GGGCCTTAAACCCCTAAGCAGTAGGGTAACAAGCTAAATTTACAGATCTTAACCCCCAAGCAGTA
*
45122744 GGGAAACAGATCGAAGATGATG
196 GGGAAACAAATCGAAGATGATG
** * * *
45122766 GGCCTTAAACCACTAAGCAGTAGGGTAACAG
1 GATCTTAACCCCCTAAGCAGTAGGGAAACAG
45122797 GATGAATTTA
Statistics
Matches: 233, Mismatches: 15, Indels: 1
0.94 0.06 0.00
Matches are distributed among these distances:
217 52 0.22
218 181 0.78
ACGTcount: A:0.35, C:0.22, G:0.24, T:0.18
Consensus pattern (217 bp):
GATCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGGCAATGGGCCTTAAACCCCTAAGCAGC
AGGGTAACAAGCTAAATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGGCGAT
GGGCCTTAAACCCCTAAGCAGTAGGGTAACAAGCTAAATTTACAGATCTTAACCCCCAAGCAGTA
GGGAAACAAATCGAAGATGATG
Found at i:45122769 original size:173 final size:172
Alignment explanation
Indices: 45122549--45122972 Score: 598
Period size: 173 Copynumber: 2.4 Consensus size: 172
45122539 GAAGGTGATG
* *
45122549 GATCTTAACCTCCTAAGCAGTAGGGAAACAGATCGAAGGCAATGGGCCTTAAACCCCTAAGCAGT
1 GATCTTAACC-CCTAAGCAGTAGGGAAACAGATCGAAGACGATGGGCCTTAAACCCCTAAGCAGT
* *
45122614 AGGGTAACAGGCTAAATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGGCGAT
65 AGGGTAACAGGCTAAATTTACAGATCTTAACACCCTAAGCAGTAGGGAAACAGAACGAAGGCGAT
** *
45122679 GGGCCTTAAACCCCTAAGCAGTAGGGTAACAAGCTGAATTTACA
130 AAGCCTTAAACCCCTAAGCAGTAGGGAAACAAGCTGAA-TTACA
* * *
45122723 GATCTTAACCCCCAAGCAGTAGGGAAACAGATCGAAGATGATGGGCCTTAAACCACTAAGCAGTA
1 GATCTTAACCCCTAAGCAGTAGGGAAACAGATCGAAGACGATGGGCCTTAAACCCCTAAGCAGTA
* * *
45122788 GGGTAACAGGATGAATTTACAGATCTTATCACCCTAAGCAGTAGGGAAACAGAACGAAGGCGATA
66 GGGTAACAGGCTAAATTTACAGATCTTAACACCCTAAGCAGTAGGGAAACAGAACGAAGGCGATA
* *
45122853 AGCCTTAAACCCCTAAGCAGTAGGGAAACAGGTTGAATTACA
131 AGCCTTAAACCCCTAAGCAGTAGGGAAACAAGCTGAATTACA
** * * ** * *
45122895 GATCTTGTCTCCCTAAGCAGTAGTGG-AGCAGATCGAAGACGGTAAGCCTTAACCCCCTAAACAG
1 GATCTTAAC-CCCTAAGCAGTAG-GGAAACAGATCGAAGACGATGGGCCTTAAACCCCTAAGCAG
45122959 TAGGGTAACAGGCT
64 TAGGGTAACAGGCT
45122973 GGAATCTATA
Statistics
Matches: 221, Mismatches: 27, Indels: 5
0.87 0.11 0.02
Matches are distributed among these distances:
172 12 0.05
173 197 0.89
174 12 0.05
ACGTcount: A:0.35, C:0.22, G:0.24, T:0.19
Consensus pattern (172 bp):
GATCTTAACCCCTAAGCAGTAGGGAAACAGATCGAAGACGATGGGCCTTAAACCCCTAAGCAGTA
GGGTAACAGGCTAAATTTACAGATCTTAACACCCTAAGCAGTAGGGAAACAGAACGAAGGCGATA
AGCCTTAAACCCCTAAGCAGTAGGGAAACAAGCTGAATTACA
Found at i:45122792 original size:86 final size:86
Alignment explanation
Indices: 45122549--45122973 Score: 584
Period size: 87 Copynumber: 4.9 Consensus size: 86
45122539 GAAGGTGATG
*
45122549 GATCTTAACCTCCTAAGCAGTAGGGAAACAGATCGAAGGCAATGGGCCTTAAACCCCTAAGCAGT
1 GATCTTAACC-CCTAAGCAGTAGGGAAACAGATCGAAGGCGATGGGCCTTAAACCCCTAAGCAGT
*
45122614 AGGGTAACAGGCTAAATTTACA
65 AGGGTAACAGGCTGAATTTACA
45122636 GATCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGGCGATGGGCCTTAAACCCCTAAGCAGT
1 GATCTTAA-CCCCTAAGCAGTAGGGAAACAGATCGAAGGCGATGGGCCTTAAACCCCTAAGCAGT
*
45122701 AGGGTAACAAGCTGAATTTACA
65 AGGGTAACAGGCTGAATTTACA
* ** *
45122723 GATCTTAACCCCCAAGCAGTAGGGAAACAGATCGAAGATGATGGGCCTTAAACCACTAAGCAGTA
1 GATCTTAACCCCTAAGCAGTAGGGAAACAGATCGAAGGCGATGGGCCTTAAACCCCTAAGCAGTA
*
45122788 GGGTAACAGGATGAATTTACA
66 GGGTAACAGGCTGAATTTACA
* * **
45122809 GATCTTATCACCCTAAGCAGTAGGGAAACAGAACGAAGGCGATAAGCCTTAAACCCCTAAGCAGT
1 GATCTTAAC-CCCTAAGCAGTAGGGAAACAGATCGAAGGCGATGGGCCTTAAACCCCTAAGCAGT
* *
45122874 AGGGAAACAGGTTGAA-TTACA
65 AGGGTAACAGGCTGAATTTACA
** * * * ** * *
45122895 GATCTTGTCTCCCTAAGCAGTAGTGG-AGCAGATCGAAGACGGTAAGCCTTAACCCCCTAAACAG
1 GATCTTAAC-CCCTAAGCAGTAG-GGAAACAGATCGAAGGCGATGGGCCTTAAACCCCTAAGCAG
45122959 TAGGGTAACAGGCTG
64 TAGGGTAACAGGCTG
45122974 GAATCTATAA
Statistics
Matches: 306, Mismatches: 29, Indels: 7
0.89 0.08 0.02
Matches are distributed among these distances:
86 151 0.49
87 153 0.50
88 2 0.01
ACGTcount: A:0.35, C:0.22, G:0.24, T:0.19
Consensus pattern (86 bp):
GATCTTAACCCCTAAGCAGTAGGGAAACAGATCGAAGGCGATGGGCCTTAAACCCCTAAGCAGTA
GGGTAACAGGCTGAATTTACA
Found at i:45123413 original size:28 final size:30
Alignment explanation
Indices: 45123382--45123437 Score: 80
Period size: 28 Copynumber: 1.9 Consensus size: 30
45123372 TGACGCCTTT
45123382 GCACCGCCACCTGCTCCA-TTGC-CCTGTA
1 GCACCGCCACCTGCTCCACTTGCACCTGTA
* *
45123410 GCACCTCCACTTGCTCCACTTGCACCTG
1 GCACCGCCACCTGCTCCACTTGCACCTG
45123438 CGAAAGCCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 16 0.67
29 4 0.17
30 4 0.17
ACGTcount: A:0.14, C:0.46, G:0.16, T:0.23
Consensus pattern (30 bp):
GCACCGCCACCTGCTCCACTTGCACCTGTA
Found at i:45126131 original size:25 final size:25
Alignment explanation
Indices: 45126103--45126181 Score: 74
Period size: 25 Copynumber: 3.3 Consensus size: 25
45126093 GTAATGACCG
45126103 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
* *** ** *
45126128 ATGTGAT-AAGGCCTAA-TGGCT-G
1 ATGTGATGAATGTGAAAGTGTATAT
45126150 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
45126175 ATGTGAT
1 ATGTGAT
45126182 AAGGCCTAAT
Statistics
Matches: 37, Mismatches: 14, Indels: 6
0.65 0.25 0.11
Matches are distributed among these distances:
22 7 0.19
23 8 0.22
24 8 0.22
25 14 0.38
ACGTcount: A:0.33, C:0.04, G:0.29, T:0.34
Consensus pattern (25 bp):
ATGTGATGAATGTGAAAGTGTATAT
Found at i:45126153 original size:47 final size:47
Alignment explanation
Indices: 45126094--45126421 Score: 521
Period size: 47 Copynumber: 6.9 Consensus size: 47
45126084 TAGTATGGCG
*
45126094 TAATGACCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
*
45126141 TAATGGCTGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
* *
45126188 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTAATAGGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCC
45126237 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
45126284 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
* *
45126331 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
* * * * * * *
45126378 GAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGGTAAG
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
45126422 TCCCGAAGGG
Statistics
Matches: 261, Mismatches: 18, Indels: 4
0.92 0.06 0.01
Matches are distributed among these distances:
47 216 0.83
49 45 0.17
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
Found at i:45126352 original size:143 final size:141
Alignment explanation
Indices: 45126094--45126421 Score: 539
Period size: 143 Copynumber: 2.3 Consensus size: 141
45126084 TAGTATGGCG
* *
45126094 TAATGACCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCTGATGTGATGA
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
45126159 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
66 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATAT
*
45126224 ATGTAATAGGGCC
129 ATGTAACAGGGCC
45126237 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
45126302 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
66 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
*
45126367 GTGACAGGGCC
131 GTAACAGGGCC
* * * * * * *
45126378 GAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGGTAAG
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
45126422 TCCCGAAGGG
Statistics
Matches: 174, Mismatches: 11, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
141 53 0.30
143 121 0.70
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.29
Consensus pattern (141 bp):
TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
GTAACAGGGCC
Found at i:45126596 original size:37 final size:37
Alignment explanation
Indices: 45126540--45126618 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
45126530 CCGAGCTCTA
* * * *
45126540 AAGACCCGATGACTACGTGTGGGGATTTTTTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
45126577 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
45126614 AAGAC
1 AAGAC
45126619 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.24, C:0.19, G:0.30, T:0.27
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:45128296 original size:13 final size:15
Alignment explanation
Indices: 45128280--45128317 Score: 55
Period size: 14 Copynumber: 2.7 Consensus size: 15
45128270 TGTATATATT
45128280 TTATATTTTT-T-TA
1 TTATATTTTTATGTA
45128293 TTATATTTTTATGTA
1 TTATATTTTTATGTA
45128308 -TATATTTTTA
1 TTATATTTTTA
45128318 ATATCACATT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
13 10 0.43
14 11 0.48
15 2 0.09
ACGTcount: A:0.26, C:0.00, G:0.03, T:0.71
Consensus pattern (15 bp):
TTATATTTTTATGTA
Found at i:45128311 original size:14 final size:14
Alignment explanation
Indices: 45128276--45128317 Score: 54
Period size: 13 Copynumber: 3.1 Consensus size: 14
45128266 ATTATGTATA
45128276 TATT-TTATATTTT
1 TATTATTATATTTT
45128289 T-TTATTATATTTT
1 TATTATTATATTTT
45128302 TATGTA-TATATTTT
1 TAT-TATTATATTTT
45128316 TA
1 TA
45128318 ATATCACATT
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
12 2 0.08
13 11 0.42
14 11 0.42
15 2 0.08
ACGTcount: A:0.26, C:0.00, G:0.02, T:0.71
Consensus pattern (14 bp):
TATTATTATATTTT
Found at i:45128748 original size:18 final size:19
Alignment explanation
Indices: 45128717--45128754 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
45128707 TTATATATCG
45128717 TTATTATTAGTTATT-TTT
1 TTATTATTAGTTATTGTTT
45128735 TTATATATTA-TTATTGTTT
1 TTAT-TATTAGTTATTGTTT
45128754 T
1 T
45128755 CAATAAATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 9 0.50
19 9 0.50
ACGTcount: A:0.24, C:0.00, G:0.05, T:0.71
Consensus pattern (19 bp):
TTATTATTAGTTATTGTTT
Found at i:45128897 original size:26 final size:25
Alignment explanation
Indices: 45128819--45128897 Score: 63
Period size: 26 Copynumber: 3.0 Consensus size: 25
45128809 TTCCCTACTA
*
45128819 TATCATATT-TACATTATTACTATTAT
1 TATCATTTTATACATTATTA-T-TTAT
* *
45128845 TATCATGTTTAATACCA-TATGAATTAT
1 TATCAT-TTT-ATA-CATTATTATTTAT
45128872 TATCATTTTATACTATTATTATTTAT
1 TATCATTTTATAC-ATTATTATTTAT
45128898 ATTACTATTA
Statistics
Matches: 42, Mismatches: 5, Indels: 12
0.71 0.08 0.20
Matches are distributed among these distances:
24 1 0.02
25 4 0.10
26 17 0.40
27 12 0.29
29 6 0.14
30 2 0.05
ACGTcount: A:0.34, C:0.10, G:0.03, T:0.53
Consensus pattern (25 bp):
TATCATTTTATACATTATTATTTAT
Found at i:45131106 original size:110 final size:110
Alignment explanation
Indices: 45130904--45131222 Score: 381
Period size: 110 Copynumber: 2.9 Consensus size: 110
45130894 CCGTGATTAT
** * * *
45130904 TTAGTAGG-A-TATGTACTTATGATACAGATTGTAACGATGGCTTGATATCTTGTATATGTTGCG
1 TTAGTAGGTACTATGTACCGATGATACAGACTGTAACGATGGCTTGAGATCTTGCATATGTTGCG
* * * ***
45130967 GATTCTCTACATCTTCTGTGAGCAACATCGTGGGCTGGGGATGAA
66 GATTCTCTACAGCTTGTGTGAGCAACATCGTGAGCCAAGGATGAA
** * * * * *
45131012 TTAGTAGGTACTATGTATTGGTGATACAGACTATAACGATGGCTTAAGATCCTGCATATGTTGTG
1 TTAGTAGGTACTATGTACCGATGATACAGACTGTAACGATGGCTTGAGATCTTGCATATGTTGCG
* * * *
45131077 GATTCTTTATAGCTTGTGTAAGCAACATCGTGAGCCAAGGATTAA
66 GATTCTCTACAGCTTGTGTGAGCAACATCGTGAGCCAAGGATGAA
* * *
45131122 TTAGTAGGTACTATGTACCGATGATACAGACTGTAACGATGACTTGAGATTTTGCATGTGTTGCG
1 TTAGTAGGTACTATGTACCGATGATACAGACTGTAACGATGGCTTGAGATCTTGCATATGTTGCG
* *
45131187 AATTCTCTACAGCTTGTGTGAGCAGCATCGTGAGCC
66 GATTCTCTACAGCTTGTGTGAGCAACATCGTGAGCC
45131223 GGTCAAAGTT
Statistics
Matches: 174, Mismatches: 35, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
108 8 0.05
109 1 0.01
110 165 0.95
ACGTcount: A:0.26, C:0.15, G:0.25, T:0.34
Consensus pattern (110 bp):
TTAGTAGGTACTATGTACCGATGATACAGACTGTAACGATGGCTTGAGATCTTGCATATGTTGCG
GATTCTCTACAGCTTGTGTGAGCAACATCGTGAGCCAAGGATGAA
Found at i:45132574 original size:39 final size:39
Alignment explanation
Indices: 45132531--45132737 Score: 297
Period size: 39 Copynumber: 5.3 Consensus size: 39
45132521 GGTCTTTAAC
** *
45132531 CCGGATATTTTTCCAGCACGTAGCCTGCGGACCTCAAGT
1 CCGGATATTTTTCCAGCATATAGCCTGCGGACCTCATGT
* * *
45132570 CCGGATATATTTCTAGCATATAGCCTGCGGATCTCATGT
1 CCGGATATTTTTCCAGCATATAGCCTGCGGACCTCATGT
* * * * *
45132609 CCGGATATATTTCTAGCCTATAGCCTGTGGATCTCATGT
1 CCGGATATTTTTCCAGCATATAGCCTGCGGACCTCATGT
* *
45132648 CCGCATATTTTTCCAGCATATAGCCTACGGACCTCATGT
1 CCGGATATTTTTCCAGCATATAGCCTGCGGACCTCATGT
45132687 CCGGATATTTTTCCAGCATATAGCCTGCGGACCTCATGT
1 CCGGATATTTTTCCAGCATATAGCCTGCGGACCTCATGT
45132726 CCGGATATTTTT
1 CCGGATATTTTT
45132738 AATCTCATAT
Statistics
Matches: 151, Mismatches: 17, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 151 1.00
ACGTcount: A:0.21, C:0.27, G:0.20, T:0.32
Consensus pattern (39 bp):
CCGGATATTTTTCCAGCATATAGCCTGCGGACCTCATGT
Found at i:45141684 original size:19 final size:19
Alignment explanation
Indices: 45141648--45141690 Score: 50
Period size: 19 Copynumber: 2.3 Consensus size: 19
45141638 TAAAATTTAT
*
45141648 TAAAAATTAAAAAAAATTA
1 TAAAAATCAAAAAAAATTA
* * *
45141667 TAAAAATCATAAAGAATTG
1 TAAAAATCAAAAAAAATTA
45141686 TAAAA
1 TAAAA
45141691 TTTTATAAAA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.67, C:0.02, G:0.05, T:0.26
Consensus pattern (19 bp):
TAAAAATCAAAAAAAATTA
Found at i:45141684 original size:29 final size:28
Alignment explanation
Indices: 45141629--45141707 Score: 79
Period size: 29 Copynumber: 2.8 Consensus size: 28
45141619 AAATTTTAAT
* *
45141629 AAAAAAATT-TAAAATTTATTAAAAATTA
1 AAAAAAATTATAAAAATCA-TAAAAATTA
*
45141657 AAAAAAATTATAAAAATCATAAAGAATTG
1 AAAAAAATTATAAAAATCATAAA-AATTA
* **
45141686 TAAAATTTTATAAAAATCATAA
1 AAAAAAATTATAAAAATCATAA
45141708 TTTTTTTATA
Statistics
Matches: 43, Mismatches: 6, Indels: 3
0.83 0.12 0.06
Matches are distributed among these distances:
28 13 0.30
29 30 0.70
ACGTcount: A:0.63, C:0.03, G:0.03, T:0.32
Consensus pattern (28 bp):
AAAAAAATTATAAAAATCATAAAAATTA
Found at i:45142041 original size:29 final size:29
Alignment explanation
Indices: 45142009--45142136 Score: 104
Period size: 29 Copynumber: 4.5 Consensus size: 29
45141999 TTTTTGATGT
*
45142009 ATTTTATAATTTTTTATGATTTTTATAAA
1 ATTTAATAATTTTTTATGATTTTTATAAA
* * * * *
45142038 ATTTAAAAATATTTTATAATTTTTTTAAG
1 ATTTAATAATTTTTTATGATTTTTATAAA
* *
45142067 ATTTCAT-ATTTTTTCT-ATTTTTA-ATAA
1 ATTTAATAATTTTTTATGATTTTTATA-AA
* *
45142094 ATTTTA-AATATTTT-TGTATTTTTATTAAA
1 ATTTAATAATTTTTTATG-ATTTTTA-TAAA
45142123 ATTTAATAATTTTT
1 ATTTAATAATTTTT
45142137 ATAACTTTTA
Statistics
Matches: 76, Mismatches: 16, Indels: 13
0.72 0.15 0.12
Matches are distributed among these distances:
26 2 0.03
27 18 0.24
28 14 0.18
29 35 0.46
30 7 0.09
ACGTcount: A:0.35, C:0.02, G:0.02, T:0.61
Consensus pattern (29 bp):
ATTTAATAATTTTTTATGATTTTTATAAA
Found at i:45142061 original size:9 final size:9
Alignment explanation
Indices: 45142010--45142147 Score: 55
Period size: 9 Copynumber: 14.7 Consensus size: 9
45142000 TTTTGATGTA
45142010 TTTTATAATT
1 TTTTATAA-T
*
45142020 TTTTATGAT
1 TTTTATAAT
*
45142029 TTTTATAAAA
1 TTTTAT-AAT
* *
45142039 TTTAAAAAT
1 TTTTATAAT
45142048 ATTTTATAAT
1 -TTTTATAAT
* *
45142058 TTTTTTAAGA
1 TTTTATAA-T
* *
45142068 TTTCATATT
1 TTTTATAAT
*
45142077 TTTTCT-AT
1 TTTTATAAT
*
45142085 TTTTAATAAA
1 TTTT-ATAAT
*
45142095 TTTTAAATAT
1 TTTTATA-AT
*
45142105 TTTTGT-AT
1 TTTTATAAT
*
45142113 TTTTATTAAAA
1 TTTTA-T-AAT
*
45142124 TTTAATAAT
1 TTTTATAAT
*
45142133 TTTTATAAC
1 TTTTATAAT
45142142 TTTTAT
1 TTTTAT
45142148 TGATTTTTTT
Statistics
Matches: 90, Mismatches: 29, Indels: 19
0.65 0.21 0.14
Matches are distributed among these distances:
8 11 0.12
9 39 0.43
10 35 0.39
11 5 0.06
ACGTcount: A:0.35, C:0.02, G:0.02, T:0.61
Consensus pattern (9 bp):
TTTTATAAT
Found at i:45142087 original size:56 final size:57
Alignment explanation
Indices: 45142017--45142138 Score: 142
Period size: 56 Copynumber: 2.2 Consensus size: 57
45142007 GTATTTTATA
* *
45142017 ATTTTTTATGATTTTT-ATAAAATTTAAAAATATTTTATAATTTTT-TTAAGATTTCAT
1 ATTTTTTATGATTTTTAATAAAATTTAAAAAT-TTTTAT-ATTTTTATTAAAATTTAAT
* * * *
45142074 ATTTTTTCT-ATTTTTAATAAATTTTAAATATTTTTGTATTTTTATTAAAATTTAAT
1 ATTTTTTATGATTTTTAATAAAATTTAAAAATTTTTATATTTTTATTAAAATTTAAT
*
45142130 AATTTTTAT
1 ATTTTTTAT
45142139 AACTTTTATT
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
55 6 0.11
56 28 0.51
57 21 0.38
ACGTcount: A:0.35, C:0.02, G:0.02, T:0.61
Consensus pattern (57 bp):
ATTTTTTATGATTTTTAATAAAATTTAAAAATTTTTATATTTTTATTAAAATTTAAT
Found at i:45142145 original size:29 final size:28
Alignment explanation
Indices: 45142009--45142148 Score: 115
Period size: 28 Copynumber: 4.9 Consensus size: 28
45141999 TTTTTGATGT
*
45142009 ATTTTATAATTTTTTATGATTTTTA-TAAA
1 ATTTAATAA-TTTTTAT-ATTTTTATTAAA
* *
45142038 ATTTAAAAATATTTTATAATTTTT-TTAAG
1 ATTTAATAAT-TTTTAT-ATTTTTATTAAA
* * * *
45142067 ATTTCATATTTTTTCTATTTTTAATAAA
1 ATTTAATAATTTTTATATTTTTATTAAA
* *
45142095 TTTTAA-ATATTTTTGTATTTTTATTAAA
1 ATTTAATA-ATTTTTATATTTTTATTAAA
*
45142123 ATTTAATAATTTTTATAACTTTTATT
1 ATTTAATAATTTTTAT-ATTTTTATT
45142149 GATTTTTTTA
Statistics
Matches: 87, Mismatches: 18, Indels: 12
0.74 0.15 0.10
Matches are distributed among these distances:
27 7 0.08
28 42 0.48
29 38 0.44
ACGTcount: A:0.35, C:0.02, G:0.02, T:0.61
Consensus pattern (28 bp):
ATTTAATAATTTTTATATTTTTATTAAA
Found at i:45142383 original size:87 final size:85
Alignment explanation
Indices: 45142279--45142487 Score: 224
Period size: 91 Copynumber: 2.4 Consensus size: 85
45142269 GTATTTTTAC
* *
45142279 AGTTCAAATACCTAATTGAGTGCAAAAAAAAAATCAGGGGCTTAATTG-TTTTTTAT-AAGTTTG
1 AGTTCAAGTACCCAATTGAGTGCAAAAAAAAAA--A--GGCTTAATTGTTTTTTTATAAAGTTTG
**
45142342 AAGGCCTTTTTAATGCATTTTGAA
62 AAGGCCTTTTTAATGCATTTAAAA
*
45142366 AGTTCAAGTACCCAATTGAGTGCAAAAAACAAAAAGGCTTAATTGTCTTCTTTTTTTTTAAAGTT
1 AGTTCAAGTACCCAATTGAGTGCAAAAAA-AAAAAGGCTTAATTG-----TTTTTTTATAAAGTT
* *
45142431 TGAGGGCCTTTTTGATGCATTTAAAA
60 TGAAGGCCTTTTTAATGCATTTAAAA
* * *
45142457 AATTCAAGTACCCAATTAACTGCAAAAAAAA
1 AGTTCAAGTACCCAATTGAGTGCAAAAAAAA
45142488 GGATGGGACT
Statistics
Matches: 104, Mismatches: 10, Indels: 13
0.82 0.08 0.10
Matches are distributed among these distances:
84 10 0.10
86 1 0.01
87 27 0.26
88 4 0.04
90 9 0.09
91 53 0.51
ACGTcount: A:0.37, C:0.13, G:0.15, T:0.34
Consensus pattern (85 bp):
AGTTCAAGTACCCAATTGAGTGCAAAAAAAAAAAGGCTTAATTGTTTTTTTATAAAGTTTGAAGG
CCTTTTTAATGCATTTAAAA
Found at i:45142520 original size:91 final size:91
Alignment explanation
Indices: 45142335--45142525 Score: 226
Period size: 91 Copynumber: 2.1 Consensus size: 91
45142325 TGTTTTTTAT
* ** * * *
45142335 AAGTTTGAAGGCCTTTTTAATGCATTTTGAAAGTTCAAGTACCCAATTGAGTGCAAAAAACAAAA
1 AAGTTTGAGGGCCTTTTTAATGCATTTAAAAAATTCAAGTACCCAATTAACTGCAAAAAACAAAA
***
45142400 AGGCTTAATTGTCTTCTTTTTTTTTA
66 AGGCTTAATTGTCTTCTTTTTTGAAA
*
45142426 AAGTTTGAGGGCCTTTTTGATGCATTTAAAAAATTCAAGTACCCAATTAACTGCAAAAAA-AAGG
1 AAGTTTGAGGGCCTTTTTAATGCATTTAAAAAATTCAAGTACCCAATTAACTGCAAAAAACAA--
**
45142490 ATGGGACTTAATTG-CTT-TTTTTTGAAA
64 AAAGG-CTTAATTGTCTTCTTTTTTGAAA
45142517 AAGTTTGAG
1 AAGTTTGAG
45142526 AGCTTTTAAC
Statistics
Matches: 85, Mismatches: 12, Indels: 6
0.83 0.12 0.06
Matches are distributed among these distances:
90 2 0.02
91 69 0.81
92 6 0.07
93 8 0.09
ACGTcount: A:0.35, C:0.12, G:0.17, T:0.36
Consensus pattern (91 bp):
AAGTTTGAGGGCCTTTTTAATGCATTTAAAAAATTCAAGTACCCAATTAACTGCAAAAAACAAAA
AGGCTTAATTGTCTTCTTTTTTGAAA
Found at i:45144506 original size:27 final size:26
Alignment explanation
Indices: 45144447--45144507 Score: 77
Period size: 26 Copynumber: 2.3 Consensus size: 26
45144437 TCTCATCCCT
*
45144447 ATTTTACCCCTAGTAAAATTTTGACG
1 ATTTTACCCCTAATAAAATTTTGACG
* * *
45144473 ATCTTACCCCTAATAAATTTTTTGATG
1 ATTTTACCCCTAATAAA-ATTTTGACG
45144500 ATTTTACC
1 ATTTTACC
45144508 GTGGTAAAAT
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
26 15 0.52
27 14 0.48
ACGTcount: A:0.30, C:0.20, G:0.08, T:0.43
Consensus pattern (26 bp):
ATTTTACCCCTAATAAAATTTTGACG
Found at i:45146417 original size:25 final size:25
Alignment explanation
Indices: 45146389--45146437 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
45146379 AATTTGACAG
* *
45146389 TTTTTTCTT-AATTTGGTATCTAAA
1 TTTTTTATTCAATTTGGTACCTAAA
45146413 TTTTTTATTCAATTTGGTACCTAAA
1 TTTTTTATTCAATTTGGTACCTAAA
45146438 CTTGTCAAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 8 0.36
25 14 0.64
ACGTcount: A:0.27, C:0.10, G:0.08, T:0.55
Consensus pattern (25 bp):
TTTTTTATTCAATTTGGTACCTAAA
Found at i:45147054 original size:29 final size:30
Alignment explanation
Indices: 45146969--45147055 Score: 95
Period size: 29 Copynumber: 2.8 Consensus size: 30
45146959 AAACTTGGAC
*
45146969 AAAAAAAATCTTAAATATCAAATTAATAAA
1 AAAAAAAAGCTTAAATATCAAATTAATAAA
* * *
45146999 AAAAATATCAAGTTTAAATACCAAATTAA-ATA
1 AAAAA-A--AAGCTTAAATATCAAATTAATAAA
*
45147031 AAGAAAAAGCTTAAATATCAAATTA
1 AAAAAAAAGCTTAAATATCAAATTA
45147056 GAAAAAACAT
Statistics
Matches: 47, Mismatches: 7, Indels: 7
0.77 0.11 0.11
Matches are distributed among these distances:
29 17 0.36
30 5 0.11
31 2 0.04
32 6 0.13
33 17 0.36
ACGTcount: A:0.62, C:0.08, G:0.03, T:0.26
Consensus pattern (30 bp):
AAAAAAAAGCTTAAATATCAAATTAATAAA
Found at i:45152296 original size:20 final size:19
Alignment explanation
Indices: 45152264--45152312 Score: 62
Period size: 20 Copynumber: 2.5 Consensus size: 19
45152254 TTGTAATGGT
*
45152264 TATATTTTAATATTTAAAA
1 TATAATTTAATATTTAAAA
*
45152283 TATAATTTATATATTTAAAT
1 TATAATTTA-ATATTTAAAA
*
45152303 TAAAATTTAA
1 TATAATTTAA
45152313 AAAAATTAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
19 9 0.35
20 17 0.65
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (19 bp):
TATAATTTAATATTTAAAA
Found at i:45157357 original size:51 final size:51
Alignment explanation
Indices: 45157281--45157395 Score: 185
Period size: 51 Copynumber: 2.3 Consensus size: 51
45157271 TAGATCACAT
45157281 TTATCACTTGTCACTTGTAACTGATCAGATAAGTGTAGCTAAAGCTACAAC
1 TTATCACTTGTCACTTGTAACTGATCAGATAAGTGTAGCTAAAGCTACAAC
* * * * *
45157332 TTATCACTTGTCACTTGTCATTGATCAGATAAGTGTAGCTGAGGCTACCAC
1 TTATCACTTGTCACTTGTAACTGATCAGATAAGTGTAGCTAAAGCTACAAC
45157383 TTATCACTTGTCA
1 TTATCACTTGTCA
45157396 TTGATCAAAA
Statistics
Matches: 59, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
51 59 1.00
ACGTcount: A:0.29, C:0.21, G:0.17, T:0.34
Consensus pattern (51 bp):
TTATCACTTGTCACTTGTAACTGATCAGATAAGTGTAGCTAAAGCTACAAC
Found at i:45160850 original size:50 final size:52
Alignment explanation
Indices: 45160791--45160901 Score: 181
Period size: 50 Copynumber: 2.2 Consensus size: 52
45160781 TTAATAAAGT
45160791 CATGCATTATGTAACTCTCATGTTAGTT-AAGTTTGCATCA-TAAATTATGA
1 CATGCATTATGTAACTCTCATGTTAGTTAAAGTTTGCATCATTAAATTATGA
* * *
45160841 CATGTATTATGTAACTCTCATGTTAGTTAAAGTTTGCATCATTAAATTAAGT
1 CATGCATTATGTAACTCTCATGTTAGTTAAAGTTTGCATCATTAAATTATGA
45160893 CATGCATTA
1 CATGCATTA
45160902 AGTTATCATT
Statistics
Matches: 55, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
50 27 0.49
51 12 0.22
52 16 0.29
ACGTcount: A:0.32, C:0.14, G:0.14, T:0.41
Consensus pattern (52 bp):
CATGCATTATGTAACTCTCATGTTAGTTAAAGTTTGCATCATTAAATTATGA
Found at i:45163979 original size:16 final size:15
Alignment explanation
Indices: 45163952--45163983 Score: 55
Period size: 16 Copynumber: 2.1 Consensus size: 15
45163942 TCGTGCATTC
45163952 TCTTTTTTTCTTCTT
1 TCTTTTTTTCTTCTT
45163967 TCTTTTCTTTCTTCTT
1 TCTTTT-TTTCTTCTT
45163983 T
1 T
45163984 TTATATTCTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 6 0.38
16 10 0.62
ACGTcount: A:0.00, C:0.22, G:0.00, T:0.78
Consensus pattern (15 bp):
TCTTTTTTTCTTCTT
Found at i:45164115 original size:21 final size:21
Alignment explanation
Indices: 45164085--45164128 Score: 79
Period size: 21 Copynumber: 2.1 Consensus size: 21
45164075 CTGTCCACTA
*
45164085 TATATGTATAGGTATAATTAC
1 TATATATATAGGTATAATTAC
45164106 TATATATATAGGTATAATTAC
1 TATATATATAGGTATAATTAC
45164127 TA
1 TA
45164129 CATTGGCCCT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.41, C:0.05, G:0.11, T:0.43
Consensus pattern (21 bp):
TATATATATAGGTATAATTAC
Found at i:45174206 original size:40 final size:39
Alignment explanation
Indices: 45174169--45174297 Score: 172
Period size: 40 Copynumber: 3.2 Consensus size: 39
45174159 TGAGGAATGT
45174169 TATCCGGGCTTAAAGAACCGCAGGCTTAGTGCTGGAATTG
1 TATCCGGGCTTAAAGAACCGCAGGCTTA-TGCTGGAATTG
*
45174209 TATCCGGGCTTAAAG-ACCTGCAGGCTATATGTTGGAA-TG
1 TATCCGGGCTTAAAGAACC-GCAGGCT-TATGCTGGAATTG
* *
45174248 TTATCCGGGCTTAAAGACCCGCAGGCTTCATGCTGAAATTG
1 -TATCCGGGCTTAAAGAACCGCAGGCTT-ATGCTGGAATTG
45174289 TATCCGGGC
1 TATCCGGGC
45174298 ATTGAATATC
Statistics
Matches: 79, Mismatches: 4, Indels: 12
0.83 0.04 0.13
Matches are distributed among these distances:
39 6 0.08
40 67 0.85
41 6 0.08
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TATCCGGGCTTAAAGAACCGCAGGCTTATGCTGGAATTG
Found at i:45181661 original size:40 final size:40
Alignment explanation
Indices: 45181624--45181769 Score: 215
Period size: 40 Copynumber: 3.6 Consensus size: 40
45181614 TGAGGAATGT
*
45181624 TATCCGGGCTTAAAGACCCGCAGGCTTCCTGCTGGAATTG
1 TATCCGGGCTTAAAGACCCGCAGGCTTCATGCTGGAATTG
*
45181664 TATCCGGGCTTAAAGACCCACAGGCTAT-ATGCTGGAA-TG
1 TATCCGGGCTTAAAGACCCGCAGGCT-TCATGCTGGAATTG
* * *
45181703 TTATCTGGGCTTAAAGACCCGCAGGCTTCGTGCTGAAATTG
1 -TATCCGGGCTTAAAGACCCGCAGGCTTCATGCTGGAATTG
45181744 TATCCGGGCTTAAAGACCCGCAGGCT
1 TATCCGGGCTTAAAGACCCGCAGGCT
45181770 ACGAGCTGGT
Statistics
Matches: 95, Mismatches: 7, Indels: 8
0.86 0.06 0.07
Matches are distributed among these distances:
39 3 0.03
40 89 0.94
41 3 0.03
ACGTcount: A:0.23, C:0.25, G:0.27, T:0.25
Consensus pattern (40 bp):
TATCCGGGCTTAAAGACCCGCAGGCTTCATGCTGGAATTG
Found at i:45181750 original size:80 final size:80
Alignment explanation
Indices: 45181617--45181770 Score: 272
Period size: 80 Copynumber: 1.9 Consensus size: 80
45181607 TGATACTTGA
*
45181617 GGAATGTTATCCGGGCTTAAAGACCCGCAGGCTTCCTGCTGGAATTGTATCCGGGCTTAAAGACC
1 GGAATGTTATCCGGGCTTAAAGACCCGCAGGCTTCCTGCTGAAATTGTATCCGGGCTTAAAGACC
45181682 CACAGGCTATATGCT
66 CACAGGCTATATGCT
* *
45181697 GGAATGTTATCTGGGCTTAAAGACCCGCAGGCTTCGTGCTGAAATTGTATCCGGGCTTAAAGACC
1 GGAATGTTATCCGGGCTTAAAGACCCGCAGGCTTCCTGCTGAAATTGTATCCGGGCTTAAAGACC
*
45181762 CGCAGGCTA
66 CACAGGCTA
45181771 CGAGCTGGTA
Statistics
Matches: 70, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
80 70 1.00
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.25
Consensus pattern (80 bp):
GGAATGTTATCCGGGCTTAAAGACCCGCAGGCTTCCTGCTGAAATTGTATCCGGGCTTAAAGACC
CACAGGCTATATGCT
Found at i:45194877 original size:20 final size:18
Alignment explanation
Indices: 45194841--45194891 Score: 59
Period size: 20 Copynumber: 2.7 Consensus size: 18
45194831 AAAGGCTATT
*
45194841 TTGTAAAGTTGTAAAATAA
1 TTGTAAA-TTGTGAAATAA
45194860 GTTGTAAATATGTGAAATAA
1 -TTGTAAAT-TGTGAAATAA
45194880 TTG-AAATTGTGA
1 TTGTAAATTGTGA
45194892 GTTGCTATAG
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
17 5 0.17
18 4 0.14
19 4 0.14
20 16 0.55
ACGTcount: A:0.43, C:0.00, G:0.20, T:0.37
Consensus pattern (18 bp):
TTGTAAATTGTGAAATAA
Found at i:45195737 original size:94 final size:91
Alignment explanation
Indices: 45195538--45195758 Score: 235
Period size: 94 Copynumber: 2.4 Consensus size: 91
45195528 TGATATGTGT
* * *
45195538 GCTAGTGTAAGACATGTCTGGGACATGCATTGGCCACATATTGAGAGCCAGTGTAAGACATATCT
1 GCTAGTGTAAGACATGTCTGGGACATGCA-T--CAACATAATGAGAACCAGTGTAAGACATATCT
* * *
45195603 GGGACATGCATCAGCCTCGAGATATTCCA
63 GGGACATGCATCAACCTCGAGATATACAA
* * * * *
45195632 GCCAGTATAAGACATGTTTGGGACATGCATCAACATTGAGATGAGAACTAGTGTAAGACATGTCT
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAACA-T-A-ATGAGAACCAGTGTAAGACATATCT
* *
45195697 GGGACATTCATCAACCTCGAGGTATACAA
63 GGGACATGCATCAACCTCGAGATATACAA
* * *
45195726 GTTAGTGTAAGACCTGTCTGAGACATGGCATCA
1 GCTAGTGTAAGACATGTCTGGGACAT-GCATCA
45195759 GCTTGTTGTG
Statistics
Matches: 104, Mismatches: 19, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
91 4 0.04
92 1 0.01
93 2 0.02
94 91 0.88
95 6 0.06
ACGTcount: A:0.31, C:0.19, G:0.25, T:0.25
Consensus pattern (91 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCAACATAATGAGAACCAGTGTAAGACATATCTGGG
ACATGCATCAACCTCGAGATATACAA
Found at i:45195744 original size:48 final size:48
Alignment explanation
Indices: 45195538--45195758 Score: 175
Period size: 46 Copynumber: 4.7 Consensus size: 48
45195528 TGATATGTGT
*** * **
45195538 GCTAGTGTAAGACATGTCTGGGACATGCATTGGCCAC-A--TATTGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAACCTCGAGGTATACA-A
* * * * * *
45195584 GCCAGTGTAAGACATATCTGGGACATGCATCAGCCTCGAGATATTCCA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAACCTCGAGGTATACAA
* * * * * *
45195632 GCCAGTATAAGACATGTTTGGGACATGCATCAACATTGA-G-ATGAGAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAACCTCGAGGTAT-ACAA
*
45195679 -CTAGTGTAAGACATGTCTGGGACATTCATCAACCTCGAGGTATACAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAACCTCGAGGTATACAA
* * *
45195726 GTTAGTGTAAGACCTGTCTGAGACATGGCATCA
1 GCTAGTGTAAGACATGTCTGGGACAT-GCATCA
45195759 GCTTGTTGTG
Statistics
Matches: 139, Mismatches: 28, Indels: 13
0.77 0.16 0.07
Matches are distributed among these distances:
46 66 0.47
47 6 0.04
48 58 0.42
49 9 0.06
ACGTcount: A:0.31, C:0.19, G:0.25, T:0.25
Consensus pattern (48 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCAACCTCGAGGTATACAA
Found at i:45195860 original size:49 final size:49
Alignment explanation
Indices: 45195773--45195902 Score: 145
Period size: 49 Copynumber: 2.7 Consensus size: 49
45195763 GTTGTGTGTT
* * * *
45195773 AGTGTAAGACCTGTCTGGGACATGACATAGACACCGATAGGTGAGAGCC
1 AGTGTAAGACCTGTCTGGGACATGACATCGGCACCGATAGATGAAAGCC
* * * *
45195822 AGTGTAAGACCTGTCTGGGACACGGCATCGGC-CTCGATATATGAAAGTC
1 AGTGTAAGACCTGTCTGGGACATGACATCGGCAC-CGATAGATGAAAGCC
* * *
45195871 AATGTAAGGCCTGTCTGGGACATGTCATCGGC
1 AGTGTAAGACCTGTCTGGGACATGACATCGGC
45195903 TTAATGTGCT
Statistics
Matches: 68, Mismatches: 12, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
48 1 0.01
49 67 0.99
ACGTcount: A:0.27, C:0.22, G:0.30, T:0.22
Consensus pattern (49 bp):
AGTGTAAGACCTGTCTGGGACATGACATCGGCACCGATAGATGAAAGCC
Found at i:45201801 original size:27 final size:27
Alignment explanation
Indices: 45201763--45201936 Score: 188
Period size: 27 Copynumber: 6.4 Consensus size: 27
45201753 TTAAGACCCC
* *
45201763 GATTTGTAAAATTACCGAAATAACCTT
1 GATTTGTAAAATTACCAAAATACCCTT
* * *
45201790 GATTTTTGAAATTACTAAAATACCCTT
1 GATTTGTAAAATTACCAAAATACCCTT
* * *
45201817 -AGGTTGTAAAATTACGAAAATACCCCT
1 GA-TTTGTAAAATTACCAAAATACCCTT
* *
45201844 GATTTGTAAAATTACTAAAATACCCCT
1 GATTTGTAAAATTACCAAAATACCCTT
* **
45201871 AATTTGTAAAATTACCAAAATAATCTT
1 GATTTGTAAAATTACCAAAATACCCTT
* * *
45201898 GATTTGTAAAATTACCGAAATTCCCCT
1 GATTTGTAAAATTACCAAAATACCCTT
45201925 GATTTGTAAAAT
1 GATTTGTAAAAT
45201937 GACAGTAATA
Statistics
Matches: 122, Mismatches: 23, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
26 1 0.01
27 120 0.98
28 1 0.01
ACGTcount: A:0.40, C:0.16, G:0.10, T:0.34
Consensus pattern (27 bp):
GATTTGTAAAATTACCAAAATACCCTT
Found at i:45201905 original size:81 final size:81
Alignment explanation
Indices: 45201758--45201936 Score: 211
Period size: 81 Copynumber: 2.2 Consensus size: 81
45201748 GGTTGTTAAG
* * * * * * *
45201758 ACCCC-GATTTGTAAAATTACCGAAATAACCTTGATTTTTGAAATTACTAAAATACCCTTAGGTT
1 ACCCCTGATTTGTAAAATTACCAAAATAACCCTAATTTGTAAAATTACCAAAATAACCTTAGGTT
45201822 GTAAAATTA-CGAAAAT
66 GTAAAATTACCG-AAAT
* * * *
45201838 ACCCCTGATTTGTAAAATTACTAAAATACCCCTAATTTGTAAAATTACCAAAATAATCTT-GATT
1 ACCCCTGATTTGTAAAATTACCAAAATAACCCTAATTTGTAAAATTACCAAAATAACCTTAG-GT
45201902 TGTAAAATTACCGAAAT
65 TGTAAAATTACCGAAAT
*
45201919 TCCCCTGATTTGTAAAAT
1 ACCCCTGATTTGTAAAAT
45201937 GACAGTAATA
Statistics
Matches: 84, Mismatches: 12, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
80 6 0.07
81 76 0.90
82 2 0.02
ACGTcount: A:0.40, C:0.17, G:0.09, T:0.34
Consensus pattern (81 bp):
ACCCCTGATTTGTAAAATTACCAAAATAACCCTAATTTGTAAAATTACCAAAATAACCTTAGGTT
GTAAAATTACCGAAAT
Found at i:45201950 original size:27 final size:27
Alignment explanation
Indices: 45201758--45201952 Score: 168
Period size: 27 Copynumber: 7.3 Consensus size: 27
45201748 GGTTGTTAAG
*
45201758 ACCCC-GATTTGTAAAATTACCGAAAT
1 ACCCCTGATTTGTAAAATTACAGAAAT
* * * *
45201784 AACCTTGATTTTTGAAATTACTA-AAAT
1 ACCCCTGATTTGTAAAATTAC-AGAAAT
* *
45201811 A-CCCTTAGGTTGTAAAATTAC-GAAAAT
1 ACCCCTGA-TTTGTAAAATTACAG-AAAT
45201838 ACCCCTGATTTGTAAAATTACTA-AAAT
1 ACCCCTGATTTGTAAAATTAC-AGAAAT
*
45201865 ACCCCTAATTTGTAAAATTACCA-AAAT
1 ACCCCTGATTTGTAAAATTA-CAGAAAT
** * *
45201892 AATCTTGATTTGTAAAATTACCGAAAT
1 ACCCCTGATTTGTAAAATTACAGAAAT
* * *
45201919 TCCCCTGATTTGTAAAATGACAGTAAT
1 ACCCCTGATTTGTAAAATTACAGAAAT
45201946 ACCCCTG
1 ACCCCTG
45201953 TAGGGTAAAA
Statistics
Matches: 133, Mismatches: 26, Indels: 19
0.75 0.15 0.11
Matches are distributed among these distances:
26 8 0.06
27 119 0.89
28 6 0.05
ACGTcount: A:0.39, C:0.18, G:0.10, T:0.32
Consensus pattern (27 bp):
ACCCCTGATTTGTAAAATTACAGAAAT
Found at i:45201960 original size:27 final size:27
Alignment explanation
Indices: 45201930--45202046 Score: 162
Period size: 27 Copynumber: 4.3 Consensus size: 27
45201920 CCCCTGATTT
*
45201930 GTAAAATGACAGTAATACCCCTGTAGG
1 GTAAAATGACTGTAATACCCCTGTAGG
*
45201957 GTAAAATAACTGTAATACCCCTGTAGG
1 GTAAAATGACTGTAATACCCCTGTAGG
* * *
45201984 GTAAAATGACCGTAATGCCCCTTTAGG
1 GTAAAATGACTGTAATACCCCTGTAGG
* * *
45202011 GTAAAATGACTGTAATGCACCTGTATG
1 GTAAAATGACTGTAATACCCCTGTAGG
45202038 GTAAAATGA
1 GTAAAATGA
45202047 AGATTATGCC
Statistics
Matches: 80, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 80 1.00
ACGTcount: A:0.36, C:0.17, G:0.21, T:0.26
Consensus pattern (27 bp):
GTAAAATGACTGTAATACCCCTGTAGG
Found at i:45201961 original size:54 final size:54
Alignment explanation
Indices: 45201903--45202046 Score: 137
Period size: 54 Copynumber: 2.7 Consensus size: 54
45201893 ATCTTGATTT
* * **
45201903 GTAAAATTACCGAAATTCCCCTG-ATTTGTAAAATGACAGTAATACCCCTGTAGG
1 GTAAAATAACCGAAATACCCCTGTA-GGGTAAAATGACAGTAATACCCCTGTAGG
* * * * *
45201957 GTAAAATAACTGTAATACCCCTGTAGGGTAAAATGACCGTAATGCCCCTTTAGG
1 GTAAAATAACCGAAATACCCCTGTAGGGTAAAATGACAGTAATACCCCTGTAGG
* * * * * *
45202011 GTAAAATGACTGTAATGCACCTGTATGGTAAAATGA
1 GTAAAATAACCGAAATACCCCTGTAGGGTAAAATGA
45202047 AGATTATGCC
Statistics
Matches: 76, Mismatches: 13, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
54 75 0.99
55 1 0.01
ACGTcount: A:0.35, C:0.18, G:0.19, T:0.27
Consensus pattern (54 bp):
GTAAAATAACCGAAATACCCCTGTAGGGTAAAATGACAGTAATACCCCTGTAGG
Found at i:45203020 original size:24 final size:25
Alignment explanation
Indices: 45202963--45203028 Score: 66
Period size: 24 Copynumber: 2.6 Consensus size: 25
45202953 AAAAAAACTT
*
45202963 TATTTA-TATATTATTATTTACCTA
1 TATTTATTATATTATTATTTACATA
45202987 TATCTATATTATATT-TTA-TTACATAA
1 TAT-T-TATTATATTATTATTTACAT-A
*
45203013 TATTTATTATACTATT
1 TATTTATTATATTATT
45203029 TTATATTTTA
Statistics
Matches: 35, Mismatches: 2, Indels: 9
0.76 0.04 0.20
Matches are distributed among these distances:
24 11 0.31
25 9 0.26
26 9 0.26
27 6 0.17
ACGTcount: A:0.35, C:0.08, G:0.00, T:0.58
Consensus pattern (25 bp):
TATTTATTATATTATTATTTACATA
Found at i:45208099 original size:27 final size:27
Alignment explanation
Indices: 45208055--45208138 Score: 84
Period size: 27 Copynumber: 3.2 Consensus size: 27
45208045 ATGGAGGAAG
* * *
45208055 TACTG-TATTGGTGACTATGTCAC-AT
1 TACTGATACTGGTGGCTATGCCACAAT
*
45208080 TCACTGTTACTGGTGGCTATGCCACAAT
1 T-ACTGATACTGGTGGCTATGCCACAAT
* *
45208108 TACTGATACTGGTGGCT-TACCACATT
1 TACTGATACTGGTGGCTATGCCACAAT
45208134 TACTG
1 TACTG
45208139 TTTCTGGCAG
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
25 1 0.02
26 16 0.32
27 30 0.60
28 3 0.06
ACGTcount: A:0.23, C:0.21, G:0.20, T:0.36
Consensus pattern (27 bp):
TACTGATACTGGTGGCTATGCCACAAT
Found at i:45208398 original size:32 final size:33
Alignment explanation
Indices: 45208329--45208425 Score: 115
Period size: 33 Copynumber: 3.0 Consensus size: 33
45208319 CCCACACTAT
* ** *
45208329 TACTGTATAGGGCTAAAGCCCAGAATGTTTTGT
1 TACTGTATAGGGCTAAAGCCCAGACTGTACTGA
*
45208362 TACTGTATAGAGCT-AAGCCCAGACTGTACTGA
1 TACTGTATAGGGCTAAAGCCCAGACTGTACTGA
* * *
45208394 TACTGGATAGGGCTCAGGCCCAGACTGTACTG
1 TACTGTATAGGGCTAAAGCCCAGACTGTACTG
45208426 CATGCATTGT
Statistics
Matches: 55, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
32 26 0.47
33 29 0.53
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.27
Consensus pattern (33 bp):
TACTGTATAGGGCTAAAGCCCAGACTGTACTGA
Found at i:45218995 original size:57 final size:58
Alignment explanation
Indices: 45218938--45219051 Score: 133
Period size: 57 Copynumber: 2.0 Consensus size: 58
45218928 TTTAGGTCAT
* * * *
45218938 TTTCA-TAGTGGAGGAAACCACATTCATTTCCCAATG-GTTCAATTTCTTCATTTTCA
1 TTTCATTAGTGGAGAAAACCACAATCATTTCCAAATGTGTTCAATTTCTCCATTTTCA
** * * *
45218994 TTTCATTTTTGGAGAAAACCATAATCATTTCCAAATGTTTTCTATTTCTCCATTTTCA
1 TTTCATTAGTGGAGAAAACCACAATCATTTCCAAATGTGTTCAATTTCTCCATTTTCA
45219052 CCATTTCTAT
Statistics
Matches: 47, Mismatches: 9, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
56 5 0.11
57 25 0.53
58 17 0.36
ACGTcount: A:0.27, C:0.20, G:0.10, T:0.43
Consensus pattern (58 bp):
TTTCATTAGTGGAGAAAACCACAATCATTTCCAAATGTGTTCAATTTCTCCATTTTCA
Found at i:45223480 original size:30 final size:30
Alignment explanation
Indices: 45223445--45223509 Score: 112
Period size: 30 Copynumber: 2.2 Consensus size: 30
45223435 ACACCAGGGG
45223445 ACACACGACCGTGTCACCTGACCCTGTGTC
1 ACACACGACCGTGTCACCTGACCCTGTGTC
* *
45223475 ACACACGGCCGTGTCACCTGACCGTGTGTC
1 ACACACGACCGTGTCACCTGACCCTGTGTC
45223505 ACACA
1 ACACA
45223510 TGGCTGAGAC
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.22, C:0.38, G:0.22, T:0.18
Consensus pattern (30 bp):
ACACACGACCGTGTCACCTGACCCTGTGTC
Found at i:45227092 original size:22 final size:22
Alignment explanation
Indices: 45227064--45227107 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
45227054 TGAATTTTTT
45227064 CATAAAAGTTATTTTAAAATGA
1 CATAAAAGTTATTTTAAAATGA
45227086 CATAAAAGTTATTTTAAAATGA
1 CATAAAAGTTATTTTAAAATGA
45227108 AACAAACATA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.50, C:0.05, G:0.09, T:0.36
Consensus pattern (22 bp):
CATAAAAGTTATTTTAAAATGA
Found at i:45236231 original size:39 final size:39
Alignment explanation
Indices: 45236177--45236448 Score: 445
Period size: 39 Copynumber: 7.0 Consensus size: 39
45236167 AAGACACTGA
* *
45236177 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTTGTGCCGG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
45236216 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
*
45236255 AAATATATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
* *
45236294 AAATATATCCGGGCCAAAGTCCCGCAGGCTTCGTGCTGG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
*
45236333 AAATGTATCCGGACTAAAGTCCCGCAGGCTTCGTGCTGG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
*
45236372 AAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTGCTGG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
* * * *
45236411 AGATGTATCCGAGTTAAAGTCCCGCAGGCTTTGTGCTG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTG
45236449 ATAATATAAT
Statistics
Matches: 219, Mismatches: 14, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 219 1.00
ACGTcount: A:0.22, C:0.26, G:0.29, T:0.23
Consensus pattern (39 bp):
AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
Found at i:45241853 original size:50 final size:50
Alignment explanation
Indices: 45241739--45242003 Score: 214
Period size: 50 Copynumber: 5.5 Consensus size: 50
45241729 AGATGCCGAC
* * * * * *
45241739 GCCATGTCTCGAACATGGTCTTACACTG--GCTCACACATCAAAGTCGAT
1 GCCATGTCCCAAACATGGTCTTACACTGACTCTCACATATCGAGGTCGAT
** * *
45241787 GATATGTCCCAGACATGGTCTTACACTGACTCTCATATATCGAGGTCGAT
1 GCCATGTCCCAAACATGGTCTTACACTGACTCTCACATATCGAGGTCGAT
* * * * *
45241837 GCCATGTCCCAAACATGGTCTTACATTGGCTCTCATATGTCG-GTGCCGAT
1 GCCATGTCCCAAACATGGTCTTACACTGACTCTCACATATCGAG-GTCGAT
* * *
45241887 GCCAT-TCCCAGACATGGTCTTACACTGA----CACATATC-AAGCCGAT
1 GCCATGTCCCAAACATGGTCTTACACTGACTCTCACATATCGAGGTCGAT
* * * * * *
45241931 TCCATGTCCCAGACATGGTCTTATACTGGCTCT-A-ATATTGTGGTCGAT
1 GCCATGTCCCAAACATGGTCTTACACTGACTCTCACATATCGAGGTCGAT
45241979 G-CATGTCCCAAACAT-GTCTTACACT
1 GCCATGTCCCAAACATGGTCTTACACT
45242004 AGCACACATA
Statistics
Matches: 174, Mismatches: 33, Indels: 22
0.76 0.14 0.10
Matches are distributed among these distances:
44 10 0.06
45 27 0.16
46 9 0.05
47 17 0.10
48 29 0.17
49 21 0.12
50 61 0.35
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.29
Consensus pattern (50 bp):
GCCATGTCCCAAACATGGTCTTACACTGACTCTCACATATCGAGGTCGAT
Found at i:45241961 original size:94 final size:93
Alignment explanation
Indices: 45241733--45242013 Score: 257
Period size: 94 Copynumber: 2.9 Consensus size: 93
45241723 AGGGTAAGAT
* * * * **** *
45241733 GCCGACGCCATGTCTCGAACATGGTCTTACACTGGCTC-ACACATCAAAGTCGATGATATGTCCC
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTA-ATATTGTGGTCGATG-CATGTCCC
* *
45241797 AGACATGGTCTTACACTGACTCTCATATATCGAG
64 AGACATGGTCTTACACTGA----CACATATCGAA
* * *
45241831 GTCGATGCCATGTCCCAAACATGGTCTTACATTGGCTCTCATA-TGTCGGTGCCGATGCCAT-TC
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTAATATTGT-GGT--CGATG-CATGTC
45241894 CCAGACATGGTCTTACACTGACACATATC-AA
62 CCAGACATGGTCTTACACTGACACATATCGAA
* * * *
45241925 GCCGATTCCATGTCCCAGACATGGTCTTATACTGGCTCTAATATTGTGGTCGATGCATGTCCCAA
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTAATATTGTGGTCGATGCATGTCCCAG
45241990 ACAT-GTCTTACACTAGCACACATA
66 ACATGGTCTTACACT-G-ACACATA
45242014 ACACCCAAAT
Statistics
Matches: 153, Mismatches: 22, Indels: 21
0.78 0.11 0.11
Matches are distributed among these distances:
91 13 0.08
92 15 0.10
93 7 0.05
94 41 0.27
95 10 0.07
98 37 0.24
99 23 0.15
100 7 0.05
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.27
Consensus pattern (93 bp):
GCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTAATATTGTGGTCGATGCATGTCCCAG
ACATGGTCTTACACTGACACATATCGAA
Found at i:45242472 original size:18 final size:18
Alignment explanation
Indices: 45242449--45242484 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
45242439 CCTGAATCTT
*
45242449 AGTTTTATTGATGTATAA
1 AGTTTTATTGATCTATAA
45242467 AGTTTTATTGATCTATAA
1 AGTTTTATTGATCTATAA
45242485 CGATAAATTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.33, C:0.03, G:0.14, T:0.50
Consensus pattern (18 bp):
AGTTTTATTGATCTATAA
Found at i:45242711 original size:20 final size:20
Alignment explanation
Indices: 45242686--45242724 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
45242676 CAATTTCAAA
*
45242686 CATTTCATACAATTACCATC
1 CATTTCACACAATTACCATC
45242706 CATTTCACACAATTACCAT
1 CATTTCACACAATTACCAT
45242725 TTTCTTCCAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.36, C:0.31, G:0.00, T:0.33
Consensus pattern (20 bp):
CATTTCACACAATTACCATC
Found at i:45251568 original size:40 final size:40
Alignment explanation
Indices: 45251396--45251561 Score: 271
Period size: 40 Copynumber: 4.2 Consensus size: 40
45251386 AACCCAAGTA
* *
45251396 CCTTCGGGATTTAG-CCGGATATAGCAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
45251435 CCTTCGGGACTTAGCCCGAATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
45251475 CCTTCGGGACTTAGCCCGAATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
45251515 CCTTCGGAACTTAGCCCGGATATAGTAACTCACACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
45251555 CCTTCGG
1 CCTTCGG
45251562 ATCTTAGTCC
Statistics
Matches: 120, Mismatches: 6, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
39 13 0.11
40 107 0.89
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:45253506 original size:39 final size:40
Alignment explanation
Indices: 45253452--45253539 Score: 126
Period size: 40 Copynumber: 2.2 Consensus size: 40
45253442 AACCCAAGTA
* * *
45253452 CCTTCGGGATTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCACACAAATG
45253491 CCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATG
45253531 CCTTCGGGA
1 CCTTCGGGA
45253540 AACTCACACA
Statistics
Matches: 44, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
39 14 0.32
40 30 0.68
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATG
Found at i:45253547 original size:23 final size:23
Alignment explanation
Indices: 45253517--45253562 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
45253507 CGGATATAGT
45253517 AACTCACACAAATGCCTTCGGGA
1 AACTCACACAAATGCCTTCGGGA
45253540 AACTCACACAAATGCCTTCGGGA
1 AACTCACACAAATGCCTTCGGGA
45253563 CTTAGCCCGG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.35, C:0.30, G:0.17, T:0.17
Consensus pattern (23 bp):
AACTCACACAAATGCCTTCGGGA
Found at i:45266317 original size:25 final size:25
Alignment explanation
Indices: 45266280--45266369 Score: 94
Period size: 25 Copynumber: 3.6 Consensus size: 25
45266270 GGTTATAGAT
* *
45266280 TTCAGCTCTTATGAGCTTAACGA-TA
1 TTCAGCTCGTATGAGCTT-ACCATTA
45266305 TTCAGCTCGTATGAGCTTACCATTA
1 TTCAGCTCGTATGAGCTTACCATTA
* * *
45266330 TTCAGCTTGGATAAGCTTACCATT-
1 TTCAGCTCGTATGAGCTTACCATTA
* *
45266354 TACAGCTTGTATGAGC
1 TTCAGCTCGTATGAGC
45266370 ATACATGTAC
Statistics
Matches: 56, Mismatches: 8, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
24 16 0.29
25 40 0.71
ACGTcount: A:0.26, C:0.21, G:0.18, T:0.36
Consensus pattern (25 bp):
TTCAGCTCGTATGAGCTTACCATTA
Found at i:45269984 original size:39 final size:39
Alignment explanation
Indices: 45269941--45270021 Score: 162
Period size: 39 Copynumber: 2.1 Consensus size: 39
45269931 ATTACTTCAC
45269941 TTTCCAATACTCGCATGAATCTTACATGTACTTGAGTCA
1 TTTCCAATACTCGCATGAATCTTACATGTACTTGAGTCA
45269980 TTTCCAATACTCGCATGAATCTTACATGTACTTGAGTCA
1 TTTCCAATACTCGCATGAATCTTACATGTACTTGAGTCA
45270019 TTT
1 TTT
45270022 AAATCATTAA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 42 1.00
ACGTcount: A:0.27, C:0.22, G:0.12, T:0.38
Consensus pattern (39 bp):
TTTCCAATACTCGCATGAATCTTACATGTACTTGAGTCA
Found at i:45273929 original size:28 final size:29
Alignment explanation
Indices: 45273865--45273929 Score: 78
Period size: 29 Copynumber: 2.3 Consensus size: 29
45273855 TTTTCATTTA
* *
45273865 TTTCACAATTTAACCCCTCAATTTACACT
1 TTTCTCAATTTAACCCCTCAATTGACACT
* *
45273894 TTTCTCAATTTAATCCCT-AATTGACATT
1 TTTCTCAATTTAACCCCTCAATTGACACT
*
45273922 TTTGTCAA
1 TTTCTCAA
45273930 AAATCACTTT
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
28 15 0.48
29 16 0.52
ACGTcount: A:0.29, C:0.25, G:0.03, T:0.43
Consensus pattern (29 bp):
TTTCTCAATTTAACCCCTCAATTGACACT
Found at i:45278101 original size:14 final size:14
Alignment explanation
Indices: 45278084--45278110 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
45278074 GTAAAACAAT
45278084 GAAAATATTTTACG
1 GAAAATATTTTACG
45278098 GAAAATATTTTAC
1 GAAAATATTTTAC
45278111 TGGCAAACAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.44, C:0.07, G:0.11, T:0.37
Consensus pattern (14 bp):
GAAAATATTTTACG
Found at i:45287191 original size:33 final size:34
Alignment explanation
Indices: 45287143--45287214 Score: 94
Period size: 33 Copynumber: 2.1 Consensus size: 34
45287133 ATAGGCCCAC
* * *
45287143 ACTGTTACTGCATAGGGC-CTAGGCCCAGACTG-T
1 ACTGTTAATGAATAGGGCTC-AGGCCCAGACCGTT
45287176 ACTGTTAATGAATAGGGCTCAGGCCCAGACCGTT
1 ACTGTTAATGAATAGGGCTCAGGCCCAGACCGTT
45287210 ACTGT
1 ACTGT
45287215 ATGCACTGTT
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
33 27 0.79
34 7 0.21
ACGTcount: A:0.24, C:0.25, G:0.26, T:0.25
Consensus pattern (34 bp):
ACTGTTAATGAATAGGGCTCAGGCCCAGACCGTT
Found at i:45290697 original size:2 final size:2
Alignment explanation
Indices: 45290690--45290721 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
45290680 CACTTACGCG
*
45290690 CA CA CA CA GA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
45290722 TATATCAATC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.47, G:0.03, T:0.00
Consensus pattern (2 bp):
CA
Found at i:45296694 original size:17 final size:17
Alignment explanation
Indices: 45296672--45296707 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
45296662 CCACATCTAT
45296672 AACATGCTCCATTTCTC
1 AACATGCTCCATTTCTC
45296689 AACATGCTCCATTTCTC
1 AACATGCTCCATTTCTC
45296706 AA
1 AA
45296708 ACGGCATTCC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.28, C:0.33, G:0.06, T:0.33
Consensus pattern (17 bp):
AACATGCTCCATTTCTC
Found at i:45306856 original size:40 final size:41
Alignment explanation
Indices: 45306805--45307037 Score: 305
Period size: 40 Copynumber: 5.8 Consensus size: 41
45306795 ATTTGAATTT
* * *
45306805 TATCCGGGCTAAGTCCCGAAGGCAATTGTGCTAG-TGATTT
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTTGATTA
* *
45306845 TATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGA-TA
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTTGATTA
* *
45306885 TATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATATA
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTTGAT-TA
*
45306927 TATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGA-TA
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTTGATTA
*
45306967 TATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTG-CTA
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTTGATTA
** *
45307007 TGCCCGGGTTAAGACCCGAAGGCAATTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
45307038 TTGTGGTAAT
Statistics
Matches: 175, Mismatches: 12, Indels: 12
0.88 0.06 0.06
Matches are distributed among these distances:
39 3 0.02
40 129 0.74
41 6 0.03
42 37 0.21
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.24
Consensus pattern (41 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTTGATTA
Found at i:45306956 original size:82 final size:81
Alignment explanation
Indices: 45306805--45307037 Score: 326
Period size: 82 Copynumber: 2.9 Consensus size: 81
45306795 ATTTGAATTT
* * * * *
45306805 TATCCGGGCTAAGTCCCGAAGGCAATTGTGCTAG-TGATTTTATCCGGGCTAAGACCCGCAGGCA
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATTATATCCGGGCTAAGACCCGAAGGCA
* *
45306869 TTTGTGCGAGTTGATA
66 ATTGTGCAAGTTGATA
*
45306885 TATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATATATATCCGGGCTAAGACCCGAAGGC
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT-TATATCCGGGCTAAGACCCGAAGGC
45306950 AATTGTGCAAGTTGATA
65 AATTGTGCAAGTTGATA
* * ** *
45306967 TATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG-CTATGCCCGGGTTAAGACCCGAAGGCA
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATTATATCCGGGCTAAGACCCGAAGGCA
45307031 ATTGTGC
66 ATTGTGC
45307038 TTGTGGTAAT
Statistics
Matches: 137, Mismatches: 14, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
80 60 0.44
81 4 0.03
82 73 0.53
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.24
Consensus pattern (81 bp):
TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATTATATCCGGGCTAAGACCCGAAGGCA
ATTGTGCAAGTTGATA
Found at i:45307022 original size:122 final size:122
Alignment explanation
Indices: 45306805--45307037 Score: 351
Period size: 122 Copynumber: 1.9 Consensus size: 122
45306795 ATTTGAATTT
* * * *
45306805 TATCCGGGCTAAGTCCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACCCGCAGGCAT
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTGATTATATCCGGGCTAAGACCCGAAGGCAT
* * * *
45306870 TTGTGCGAGTTGATATATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATATA
66 TCGTGCGAGTTGATATACCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTTGATATA
45306927 TATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGA-TATATCCGGGCTAAGACCCGAAGGCA
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCAAG-TGATTATATCCGGGCTAAGACCCGAAGGCA
* * *
45306991 TTCGTGCGAGTTGCTATGCCCGGGTTAAGACCCGAAGGCAATTGTGC
65 TTCGTGCGAGTTGATATACCCGGGCTAAGACCCGAAGGCAATTGTGC
45307038 TTGTGGTAAT
Statistics
Matches: 99, Mismatches: 11, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
122 96 0.97
123 3 0.03
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.24
Consensus pattern (122 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTGATTATATCCGGGCTAAGACCCGAAGGCAT
TCGTGCGAGTTGATATACCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTTGATATA
Found at i:45308753 original size:17 final size:17
Alignment explanation
Indices: 45308731--45308770 Score: 71
Period size: 17 Copynumber: 2.4 Consensus size: 17
45308721 CCCCTAGGTG
*
45308731 TGGGCCATTGCATTGAT
1 TGGGCCACTGCATTGAT
45308748 TGGGCCACTGCATTGAT
1 TGGGCCACTGCATTGAT
45308765 TGGGCC
1 TGGGCC
45308771 GCACTCGAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.15, C:0.23, G:0.33, T:0.30
Consensus pattern (17 bp):
TGGGCCACTGCATTGAT
Found at i:45315809 original size:207 final size:207
Alignment explanation
Indices: 45315454--45315867 Score: 711
Period size: 207 Copynumber: 2.0 Consensus size: 207
45315444 TCTCACCAGG
* * **
45315454 ATGCATAGCATAAGGACTACTATGCGCCTTTCGCAGTATAGACTGCCTCAAATCAGTATCCTTTG
1 ATGCATAGCATAAGGACGACTATGCGCCTTTCGCAGTATAGACTGCCTCAAATCAGTATCATTCA
*
45315519 GTACACATATTCTCCCACAAAAATAGAGCACCCCTTCGCTATTCAGTCCAAAATCCACAGTATCC
66 GTACACATAGTCTCCCACAAAAATAGAGCACCCCTTCGCTATTCAGTCCAAAATCCACAGTATCC
* * *
45315584 CCACTCTTAACCTGACGGAAACGAAGACCCAGTGACTCGTCCTCTAATAGTTTACTCTTAATCTG
131 CCACTCTCAACCTGACGGAAACGAAGACCCAATGACTCGTCCTCCAATAGTTTACTCTTAATCTG
45315649 CTCAATCCACAT
196 CTCAATCCACAT
*
45315661 ATGCATAGCATAAGGACGACTATGCGCCTTTCGTAGTATAGACTGCCTCAAATCAGTATCATTCA
1 ATGCATAGCATAAGGACGACTATGCGCCTTTCGCAGTATAGACTGCCTCAAATCAGTATCATTCA
* * *
45315726 GTACGCATAGTCTTCCACAAAAATAGAGCACCCCTTCGCTATTCAGTCTAAAATCCACAGTATCC
66 GTACACATAGTCTCCCACAAAAATAGAGCACCCCTTCGCTATTCAGTCCAAAATCCACAGTATCC
*
45315791 CCACTCTCAACCTGACGGAAACGAAGACCCAATGACTCGTCCTCCAATTGTTTACTCTTAATCTG
131 CCACTCTCAACCTGACGGAAACGAAGACCCAATGACTCGTCCTCCAATAGTTTACTCTTAATCTG
45315856 CTCAATCCACAT
196 CTCAATCCACAT
45315868 TGGTTTAACC
Statistics
Matches: 194, Mismatches: 13, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
207 194 1.00
ACGTcount: A:0.30, C:0.30, G:0.14, T:0.26
Consensus pattern (207 bp):
ATGCATAGCATAAGGACGACTATGCGCCTTTCGCAGTATAGACTGCCTCAAATCAGTATCATTCA
GTACACATAGTCTCCCACAAAAATAGAGCACCCCTTCGCTATTCAGTCCAAAATCCACAGTATCC
CCACTCTCAACCTGACGGAAACGAAGACCCAATGACTCGTCCTCCAATAGTTTACTCTTAATCTG
CTCAATCCACAT
Found at i:45320189 original size:25 final size:25
Alignment explanation
Indices: 45320161--45320238 Score: 72
Period size: 25 Copynumber: 3.2 Consensus size: 25
45320151 CTAATGGCCG
45320161 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
*** ****
45320186 ATGTGAT-AATGCCTAA-TG-GCCG
1 ATGTGATGAATGTGAAAGTGTATAT
45320208 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
45320233 ATGTGA
1 ATGTGA
45320239 AAAAGCCTAA
Statistics
Matches: 36, Mismatches: 14, Indels: 6
0.64 0.25 0.11
Matches are distributed among these distances:
22 7 0.19
23 8 0.22
24 8 0.22
25 13 0.36
ACGTcount: A:0.33, C:0.05, G:0.28, T:0.33
Consensus pattern (25 bp):
ATGTGATGAATGTGAAAGTGTATAT
Found at i:45320347 original size:49 final size:47
Alignment explanation
Indices: 45320148--45320419 Score: 445
Period size: 47 Copynumber: 5.7 Consensus size: 47
45320138 ATGATAGTAT
45320148 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
* *
45320195 TGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAAAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
*
45320242 AGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
*
45320289 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAA
*
45320338 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAA
*
45320387 GGCCAAATGGCCGATGTGATGAATGTGATAAGT
1 GGCCTAATGGCCGATGTGATGAATGTGA-AAGT
45320420 CCCGAAGGGC
Statistics
Matches: 215, Mismatches: 7, Indels: 3
0.96 0.03 0.01
Matches are distributed among these distances:
47 122 0.57
49 89 0.41
50 4 0.02
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
Found at i:45320593 original size:37 final size:37
Alignment explanation
Indices: 45320537--45320615 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
45320527 CCGAGCTCTA
* * *
45320537 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
45320574 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
45320611 AAGAC
1 AAGAC
45320616 TTAGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:45322555 original size:29 final size:29
Alignment explanation
Indices: 45322520--45322593 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
45322510 GTTGTGAGAT
* *
45322520 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
45322549 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
45322578 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
45322594 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:45323031 original size:40 final size:40
Alignment explanation
Indices: 45322983--45323259 Score: 356
Period size: 40 Copynumber: 6.9 Consensus size: 40
45322973 GAGTTACTAA
*
45322983 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGCGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
*
45323023 ATCTGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
* *
45323063 ATCCGGGCTAAGTTCCGAAGAGCATTCATGCTAGTGATAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
* *
45323103 ATCCGGGCTAAGTCCCGAGGAGCATTCGTGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
* * *
45323143 ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
* ** * * * * *
45323183 ATCCGTGCTAAACCCCAAAGAGCATTCGTGCTGGTGTTAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
* * * * *
45323223 ATCCGAGCTAGGTCCCGAAGAGTAATCATGCTGGTGA
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA
45323260 CGTGTATTCG
Statistics
Matches: 209, Mismatches: 28, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 209 1.00
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
Found at i:45323041 original size:80 final size:80
Alignment explanation
Indices: 45322904--45323259 Score: 378
Period size: 80 Copynumber: 4.5 Consensus size: 80
45322894 TCGAATGATG
* ** * *
45322904 TCCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAG-GC
1 TCCGGGCTAAGTTCCGAAGAGCATTCATGCT-AGTGA-TATATCCGGGCTAAG-TCCCGAAGAGC
* * * **
45322965 ATTGGTGCGAGTTACTAAA
63 ATTCGTGCTAGTGA-TGTA
* * * *
45322984 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGCGATGTATCTGGGCTAAGTCCCGAAGAGCATT
1 TCCGGGCTAAGTTCCGAAGAGCATTCATGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCATT
*
45323049 CATGCTAGTGATGTA
66 CGTGCTAGTGATGTA
*
45323064 TCCGGGCTAAGTTCCGAAGAGCATTCATGCTAGTGATATATCCGGGCTAAGTCCCGAGGAGCATT
1 TCCGGGCTAAGTTCCGAAGAGCATTCATGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCATT
45323129 CGTGCTAGTGATGTA
66 CGTGCTAGTGATGTA
* * ** *
45323144 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCGTGCTAAACCCCAAAGAGCATT
1 TCCGGGCTAAGTTCCGAAGAGCATTCATGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCATT
* * *
45323209 CGTGCTGGTGTTATA
66 CGTGCTAGTGATGTA
* * * * * *
45323224 TCCGAGCTAGGTCCCGAAGAGTAATCATGCTGGTGA
1 TCCGGGCTAAGTTCCGAAGAGCATTCATGCTAGTGA
45323260 CGTGTATTCG
Statistics
Matches: 237, Mismatches: 35, Indels: 8
0.85 0.12 0.03
Matches are distributed among these distances:
79 1 0.00
80 212 0.89
81 18 0.08
82 6 0.03
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGGGCTAAGTTCCGAAGAGCATTCATGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCATT
CGTGCTAGTGATGTA
Found at i:45323120 original size:120 final size:120
Alignment explanation
Indices: 45322904--45323254 Score: 413
Period size: 120 Copynumber: 2.9 Consensus size: 120
45322894 TCGAATGATG
* * *
45322904 TCCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAG-GCA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCT-AGTGA-TATATCCGGGCTAAGATCCGAAGAGCA
* * * *
45322966 TTGGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGCGATGTA
64 TTCGTGCTAGTGA-TATATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGCGATGTA
* * * *
45323024 TCTGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTTCCGAAGAGCATT
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGATCCGAAGAGCATT
* * * *
45323089 CATGCTAGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCTAGTGATGTA
66 CGTGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGCGATGTA
* * * *
45323144 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCGTGCTAA-ACCCCAAAGAGCAT
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGA-TCCGAAGAGCAT
* * * * * *
45323208 TCGTGCTGGTGTTATATCCGAGCTAGGTCCCGAAGAGTAATCATGCT
65 TCGTGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCATGCT
45323255 GGTGACGTGT
Statistics
Matches: 195, Mismatches: 32, Indels: 8
0.83 0.14 0.03
Matches are distributed among these distances:
120 170 0.87
121 19 0.10
122 6 0.03
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (120 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGATCCGAAGAGCATT
CGTGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGCGATGTA
Found at i:45326833 original size:22 final size:23
Alignment explanation
Indices: 45326805--45326885 Score: 67
Period size: 22 Copynumber: 3.5 Consensus size: 23
45326795 AAGTGTATAT
45326805 ATGTGAT-AATGCCTAATGGCCG
1 ATGTGATGAATGCCTAATGGCCG
*** ****
45326827 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGCCTAA-TG-GCCG
45326852 ATGTGAT-AATGCCTAATGGCCG
1 ATGTGATGAATGCCTAATGGCCG
45326874 ATGTGATGAATG
1 ATGTGATGAATG
45326886 TGAAAGTGTA
Statistics
Matches: 41, Mismatches: 14, Indels: 7
0.66 0.23 0.11
Matches are distributed among these distances:
22 14 0.34
23 12 0.29
24 8 0.20
25 7 0.17
ACGTcount: A:0.31, C:0.10, G:0.28, T:0.31
Consensus pattern (23 bp):
ATGTGATGAATGCCTAATGGCCG
Found at i:45327013 original size:49 final size:47
Alignment explanation
Indices: 45326767--45327085 Score: 548
Period size: 47 Copynumber: 6.7 Consensus size: 47
45326757 ATGATAGTAT
45326767 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
*
45326814 TGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
*
45326861 TGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
45326908 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
*
45326955 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAA
*
45327004 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAA
*
45327053 GGCCAAATGGCCGATGTGATGAATGTGATAAGT
1 GGCCTAATGGCCGATGTGATGAATGTGA-AAGT
45327086 CCCGAAGGGC
Statistics
Matches: 265, Mismatches: 4, Indels: 3
0.97 0.01 0.01
Matches are distributed among these distances:
47 172 0.65
49 89 0.34
50 4 0.02
ACGTcount: A:0.31, C:0.09, G:0.30, T:0.30
Consensus pattern (47 bp):
GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
Found at i:45327259 original size:37 final size:37
Alignment explanation
Indices: 45327203--45327281 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
45327193 CCGAGCTCTA
* * *
45327203 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
45327240 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
45327277 AAGAC
1 AAGAC
45327282 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:45343628 original size:21 final size:21
Alignment explanation
Indices: 45343599--45343640 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 21
45343589 GTATGTATAT
*
45343599 ATGTATTAT-ATAATAAGAAA
1 ATGTATTATAATAAAAAGAAA
45343619 ATGTAATTATAATAAAAAGAAA
1 ATGT-ATTATAATAAAAAGAAA
45343641 GTGGTTGCAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 4 0.21
21 5 0.26
22 10 0.53
ACGTcount: A:0.60, C:0.00, G:0.10, T:0.31
Consensus pattern (21 bp):
ATGTATTATAATAAAAAGAAA
Found at i:45349358 original size:21 final size:21
Alignment explanation
Indices: 45349330--45349381 Score: 63
Period size: 21 Copynumber: 2.5 Consensus size: 21
45349320 TTTTGCCTAA
*
45349330 GATG-TAAATTGGATTGAATT
1 GATGTTAAATTGGATTAAATT
*
45349350 GA-GTTTAAATTGTATTAAATT
1 GATG-TTAAATTGGATTAAATT
45349371 GATGTTAAATT
1 GATGTTAAATT
45349382 TACTCATACC
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
19 1 0.04
20 2 0.07
21 23 0.85
22 1 0.04
ACGTcount: A:0.37, C:0.00, G:0.19, T:0.44
Consensus pattern (21 bp):
GATGTTAAATTGGATTAAATT
Found at i:45349605 original size:17 final size:17
Alignment explanation
Indices: 45349583--45349615 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
45349573 AACCAAAAAA
*
45349583 GCCCGATCAATGATAAT
1 GCCCGATAAATGATAAT
45349600 GCCCGATAAATGATAA
1 GCCCGATAAATGATAA
45349616 ATGATAAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.39, C:0.21, G:0.18, T:0.21
Consensus pattern (17 bp):
GCCCGATAAATGATAAT
Found at i:45358090 original size:16 final size:16
Alignment explanation
Indices: 45358069--45358099 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
45358059 TTCACTATTA
45358069 TGTCTTTTATATTTTC
1 TGTCTTTTATATTTTC
45358085 TGTCTTTTATATTTT
1 TGTCTTTTATATTTT
45358100 GCATGCATAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.13, C:0.10, G:0.06, T:0.71
Consensus pattern (16 bp):
TGTCTTTTATATTTTC
Found at i:45359738 original size:37 final size:36
Alignment explanation
Indices: 45359685--45359760 Score: 93
Period size: 37 Copynumber: 2.1 Consensus size: 36
45359675 ATTCCAAAAA
*
45359685 TAATATTATTTTAATAGT-TTAATATTAAATTTAAT-T
1 TAATATTATATTAATAGTATT-ATATT-AATTTAATAT
*
45359721 TAATATTTATATTAATAGTATTTTATTAATTTAATAT
1 TAATA-TTATATTAATAGTATTATATTAATTTAATAT
45359758 TAA
1 TAA
45359761 AGTGATTATC
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
36 13 0.37
37 20 0.57
38 2 0.06
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (36 bp):
TAATATTATATTAATAGTATTATATTAATTTAATAT
Found at i:45361050 original size:47 final size:47
Alignment explanation
Indices: 45360989--45361081 Score: 170
Period size: 47 Copynumber: 2.0 Consensus size: 47
45360979 GTTTTCTATT
45360989 TGTATGGAAATACACATGAAGTCTTGGTTAAATGTTTTCTTATTCAG
1 TGTATGGAAATACACATGAAGTCTTGGTTAAATGTTTTCTTATTCAG
45361036 TGTAT-GAAAGTACACATGAAGTCTTGGTTAAATGTTTTCTTATTCA
1 TGTATGGAAA-TACACATGAAGTCTTGGTTAAATGTTTTCTTATTCA
45361082 ATCTTTCTTT
Statistics
Matches: 45, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
46 4 0.09
47 41 0.91
ACGTcount: A:0.30, C:0.11, G:0.18, T:0.41
Consensus pattern (47 bp):
TGTATGGAAATACACATGAAGTCTTGGTTAAATGTTTTCTTATTCAG
Found at i:45362323 original size:51 final size:51
Alignment explanation
Indices: 45362247--45362353 Score: 214
Period size: 51 Copynumber: 2.1 Consensus size: 51
45362237 GATTGAGATA
45362247 AAGAAATTGGGAGATGAATAGAATGTCTCAATGGAGACTCATAGGAGGTCC
1 AAGAAATTGGGAGATGAATAGAATGTCTCAATGGAGACTCATAGGAGGTCC
45362298 AAGAAATTGGGAGATGAATAGAATGTCTCAATGGAGACTCATAGGAGGTCC
1 AAGAAATTGGGAGATGAATAGAATGTCTCAATGGAGACTCATAGGAGGTCC
45362349 AAGAA
1 AAGAA
45362354 GACCGAGTGA
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
51 56 1.00
ACGTcount: A:0.39, C:0.11, G:0.29, T:0.21
Consensus pattern (51 bp):
AAGAAATTGGGAGATGAATAGAATGTCTCAATGGAGACTCATAGGAGGTCC
Found at i:45376011 original size:22 final size:22
Alignment explanation
Indices: 45375986--45376028 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
45375976 CTGCGATATT
* *
45375986 TATGGCTTTTAGCCATTCTGTC
1 TATGGCGTTAAGCCATTCTGTC
*
45376008 TATGGCGTTAAGCCGTTCTGT
1 TATGGCGTTAAGCCATTCTGT
45376029 TGACTTAGTG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.14, C:0.21, G:0.23, T:0.42
Consensus pattern (22 bp):
TATGGCGTTAAGCCATTCTGTC
Found at i:45376222 original size:27 final size:28
Alignment explanation
Indices: 45376169--45376233 Score: 89
Period size: 27 Copynumber: 2.4 Consensus size: 28
45376159 GCATCTGATA
* *
45376169 CTGATTCT-TTATTGGGCTTAGGCCCAC
1 CTGATTCTGTTAATGGGCTAAGGCCCAC
45376196 CTGATTCTGTTAATGGGCTAAGG-CCAC
1 CTGATTCTGTTAATGGGCTAAGGCCCAC
*
45376223 CTGATACTGTT
1 CTGATTCTGTT
45376234 TTTGTGATGG
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
27 22 0.65
28 12 0.35
ACGTcount: A:0.18, C:0.23, G:0.23, T:0.35
Consensus pattern (28 bp):
CTGATTCTGTTAATGGGCTAAGGCCCAC
Found at i:45377088 original size:18 final size:18
Alignment explanation
Indices: 45377065--45377103 Score: 78
Period size: 18 Copynumber: 2.2 Consensus size: 18
45377055 TGGGCTGATT
45377065 TCTGCAAGAATTCTCATC
1 TCTGCAAGAATTCTCATC
45377083 TCTGCAAGAATTCTCATC
1 TCTGCAAGAATTCTCATC
45377101 TCT
1 TCT
45377104 CGAGAGTAGG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.26, C:0.28, G:0.10, T:0.36
Consensus pattern (18 bp):
TCTGCAAGAATTCTCATC
Found at i:45385564 original size:27 final size:26
Alignment explanation
Indices: 45385522--45385662 Score: 174
Period size: 27 Copynumber: 5.2 Consensus size: 26
45385512 AGGAAGCGTC
* *
45385522 CTGGTGGCTATCCCACAATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
*
45385549 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGAT
* *
45385576 TTGGTGGCTATGCCACGATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
*
45385603 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGAT
*
45385630 CTGGTGGCTCTGCCACAATATCTGTAT
1 CTGGTGGCTCTGCCACATTATCTG-AT
45385657 CTGGTG
1 CTGGTG
45385663 ACTTCGTCAT
Statistics
Matches: 99, Mismatches: 11, Indels: 8
0.84 0.09 0.07
Matches are distributed among these distances:
26 10 0.10
27 87 0.88
28 2 0.02
ACGTcount: A:0.17, C:0.24, G:0.23, T:0.35
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGAT
Found at i:45385605 original size:54 final size:53
Alignment explanation
Indices: 45385522--45385662 Score: 219
Period size: 54 Copynumber: 2.6 Consensus size: 53
45385512 AGGAAGCGTC
*
45385522 CTGGTGGCTATCCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCAC-ATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
*
45385576 TTGGTGGCTATGCCACGATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCAC-ATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
* *
45385630 CTGGTGGCTCTGCCACAATATCTGTATCTGGTG
1 CTGGTGGCTATGCCACATTATCTG-ATCTGGTG
45385663 ACTTCGTCAT
Statistics
Matches: 80, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
53 7 0.09
54 73 0.91
ACGTcount: A:0.17, C:0.24, G:0.23, T:0.35
Consensus pattern (53 bp):
CTGGTGGCTATGCCACATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
Done.