Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100714657
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 3970000 characters in sequence are not A, C, G, or T
File 149 of 318
Found at i:46398687 original size:23 final size:23
Alignment explanation
Indices: 46398661--46398706 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
46398651 CAAACTCTCC
46398661 ATCACTAGTGTTTAAACCCAACA
1 ATCACTAGTGTTTAAACCCAACA
46398684 ATCACTAGTGTTTAAACCCAACA
1 ATCACTAGTGTTTAAACCCAACA
46398707 CTAACTTGTC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.39, C:0.26, G:0.09, T:0.26
Consensus pattern (23 bp):
ATCACTAGTGTTTAAACCCAACA
Found at i:46411820 original size:46 final size:45
Alignment explanation
Indices: 46411712--46411933 Score: 173
Period size: 46 Copynumber: 4.8 Consensus size: 45
46411702 ACTATTGAAA
*
46411712 TCGAGGCCGATGCCATGTCCCAAACATGGTCTTACACTGAC--ACATC
1 TCGA-GCCGATG-CATGTCCCAAACAT-GTCTTACACTGGCTTACATC
* * *
46411758 TCATAGCCAATGCATGTCCCAAACATGTCTCACACTGGCTTACATC
1 TC-GAGCCGATGCATGTCCCAAACATGTCTTACACTGGCTTACATC
* * *
46411804 TCGAGCCCGATGCATGTCCCAAACATGTCTTACACTAGCTTTCGTC
1 TCGAG-CCGATGCATGTCCCAAACATGTCTTACACTGGCTTACATC
* * * * * * *
46411850 TCAATGCCAATGCCATGTCCCAGACATGGTCTTACATTGTCTCTTATAATG
1 TCGA-GCCGATG-CATGTCCCAAACAT-GTCTTACACTG--GCTTA-CATC
* *
46411901 T-G-GCTGATGCATGTCCCAGACATGTCTTACACT
1 TCGAGCCGATGCATGTCCCAAACATGTCTTACACT
46411934 AGCACACAAA
Statistics
Matches: 142, Mismatches: 24, Indels: 20
0.76 0.13 0.11
Matches are distributed among these distances:
44 11 0.08
45 16 0.11
46 67 0.47
47 29 0.20
48 14 0.10
50 3 0.02
51 2 0.01
ACGTcount: A:0.25, C:0.30, G:0.17, T:0.28
Consensus pattern (45 bp):
TCGAGCCGATGCATGTCCCAAACATGTCTTACACTGGCTTACATC
Found at i:46412560 original size:38 final size:38
Alignment explanation
Indices: 46412509--46412584 Score: 125
Period size: 38 Copynumber: 2.0 Consensus size: 38
46412499 GTTTATTTCA
*
46412509 CAACCATAACTCATATTTTTCCATAAAATTTTAGAAAT
1 CAACCATAACTCATATTTTTCCATAAAATTTCAGAAAT
**
46412547 CAACCATAACTCATATTTTTCTGTAAAATTTCAGAAAT
1 CAACCATAACTCATATTTTTCCATAAAATTTCAGAAAT
46412585 AAACATGTCT
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
38 35 1.00
ACGTcount: A:0.41, C:0.18, G:0.04, T:0.37
Consensus pattern (38 bp):
CAACCATAACTCATATTTTTCCATAAAATTTCAGAAAT
Found at i:46416442 original size:39 final size:39
Alignment explanation
Indices: 46416386--46416475 Score: 153
Period size: 39 Copynumber: 2.3 Consensus size: 39
46416376 CAATCTCTAC
*
46416386 ACACTTTATCAACTATCAAATGCCTGCCTAACGGGTTTT
1 ACACTTTATCAACTATCAAATGCCTGCCTAACGAGTTTT
*
46416425 ACACTTTATCAATTATCAAATGCCTGCCTAACGAGTTTT
1 ACACTTTATCAACTATCAAATGCCTGCCTAACGAGTTTT
46416464 ACACTTTTATCA
1 ACAC-TTTATCA
46416476 CAAATTCGGT
Statistics
Matches: 48, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
39 41 0.85
40 7 0.15
ACGTcount: A:0.30, C:0.24, G:0.10, T:0.36
Consensus pattern (39 bp):
ACACTTTATCAACTATCAAATGCCTGCCTAACGAGTTTT
Found at i:46426633 original size:40 final size:40
Alignment explanation
Indices: 46426559--46426700 Score: 216
Period size: 40 Copynumber: 3.6 Consensus size: 40
46426549 AACCCAAGTA
* * *
46426559 CCTTCGGGATTTAG-CCGGATATAG-CAATTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
*
46426598 CCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
46426638 CCTTCGGCACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
46426678 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
46426701 CATCCGAATA
Statistics
Matches: 94, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
39 12 0.13
40 81 0.86
41 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:46441000 original size:53 final size:53
Alignment explanation
Indices: 46440821--46441024 Score: 187
Period size: 53 Copynumber: 3.8 Consensus size: 53
46440811 TAGGGTTTAC
* * * * *
46440821 GGATACCAAGTAAGACCATGCTAAGGCATGGCATTGGTAAGTT-TTACTAGGCAA
1 GGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCATA--AGGCAA
* * * * * *
46440875 GGA-ATCATGTAAGACCATGTCAAGACATGGCATTGATAAACTACGATAAGGCAA
1 GGATACCATGTAAGACCATGCCAAGACATGGCAATGGT-AAGTTC-ATAAGGCAA
* * * * * *
46440929 AGATCCCATGTAAAACCATGCCATGGCATGGCAATGGTGAGTTCATAAGGCAA
1 GGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCATAAGGCAA
* *
46440982 GGATACCACGTAAGACCATGTCAAGACATGGCAATGGTAAGTT
1 GGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTT
46441025 TAAAAAGGAA
Statistics
Matches: 117, Mismatches: 29, Indels: 9
0.75 0.19 0.06
Matches are distributed among these distances:
53 72 0.62
54 17 0.15
55 26 0.22
56 2 0.02
ACGTcount: A:0.36, C:0.18, G:0.25, T:0.22
Consensus pattern (53 bp):
GGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCATAAGGCAA
Found at i:46448445 original size:53 final size:53
Alignment explanation
Indices: 46448268--46448469 Score: 183
Period size: 53 Copynumber: 3.8 Consensus size: 53
46448258 GGGTTTAAGT
* * * *
46448268 ATACCAAGTAAGACCATGCCAAGGCATGGC-ATGGTAAGTTTTAGAAGGCAAGG
1 ATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAG-TTCATAAGGCAAGG
* * * * * * * * *
46448321 A-ATTCATGTAAGACCATGTCACGACAAGGCATTGATAAACTACGATAAGGCAAAG
1 ATA-CCATGTAAGACCATGCCAAGACATGGCAATGGT-AAGTTC-ATAAGGCAAGG
* * * *
46448376 ATCCCATGTAAAACCATGCCAAGGCATGGCAATGGTGAGTTCATAAGGCAAGG
1 ATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCATAAGGCAAGG
* *
46448429 ATACCACGTAAGACCATGTCAAGACATGGCAATGGTAAGTT
1 ATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTT
46448470 TAAAAAGGAA
Statistics
Matches: 112, Mismatches: 32, Indels: 10
0.73 0.21 0.06
Matches are distributed among these distances:
52 1 0.01
53 67 0.60
54 7 0.06
55 37 0.33
ACGTcount: A:0.37, C:0.19, G:0.24, T:0.20
Consensus pattern (53 bp):
ATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCATAAGGCAAGG
Found at i:46455498 original size:13 final size:13
Alignment explanation
Indices: 46455480--46455506 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
46455470 AAAGTAATCG
46455480 CACACGGGCGTGT
1 CACACGGGCGTGT
46455493 CACACGGGCGTGT
1 CACACGGGCGTGT
46455506 C
1 C
46455507 CCTACCGAGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.33, G:0.37, T:0.15
Consensus pattern (13 bp):
CACACGGGCGTGT
Found at i:46459741 original size:41 final size:41
Alignment explanation
Indices: 46459675--46459824 Score: 176
Period size: 41 Copynumber: 3.7 Consensus size: 41
46459665 TCGGGGTTTA
* *
46459675 AATCTGAGCTTGGTCTCGAAAGGCTTTTGAGCCAGTGTCAT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
46459716 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
* * * * * * * * * *
46459757 AA-CTGAACCTAGTTTCGATGGGCCTTCGGGCCAATGTCAT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
*
46459797 AATTCGAGCTTGGTCTCGAAGGGCTTTT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTT
46459825 TGAGTCAGCG
Statistics
Matches: 87, Mismatches: 21, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
40 30 0.34
41 57 0.66
ACGTcount: A:0.21, C:0.21, G:0.27, T:0.31
Consensus pattern (41 bp):
AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
Found at i:46467530 original size:41 final size:41
Alignment explanation
Indices: 46467473--46467622 Score: 221
Period size: 41 Copynumber: 3.7 Consensus size: 41
46467463 TCGGGGTTTA
46467473 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
46467514 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
* * * * * * * *
46467555 AA-CCTAACCTAGTTTCGAAGGGCCTTCGAGCCAATGTCAT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
46467595 AATCCGAGCTTGGTCTCGAAGGGCTTTT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTT
46467623 TGAGTCAGCG
Statistics
Matches: 93, Mismatches: 15, Indels: 2
0.85 0.14 0.02
Matches are distributed among these distances:
40 32 0.34
41 61 0.66
ACGTcount: A:0.21, C:0.23, G:0.27, T:0.29
Consensus pattern (41 bp):
AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
Found at i:46471571 original size:54 final size:54
Alignment explanation
Indices: 46471396--46471571 Score: 185
Period size: 54 Copynumber: 3.3 Consensus size: 54
46471386 ACAATTTCCA
* * * *
46471396 TTACGTGGTATCCTTGCCTTAT-GAACTCACCATTGCCATGCCTTGGCATGGTC
1 TTACATGGTATCCTTGCCTTATAGAGCTTACCAATGCCATGCCTTGGCATGGTC
* * * * * *
46471449 TTACATGGGATCTTTGCCTTATAGTAGTTTA-TAATGCCATGTCTTGACATGGTC
1 TTACATGGTATCCTTGCCTTATAG-AGCTTACCAATGCCATGCCTTGGCATGGTC
* * * * *
46471503 TTACATGATTTCCTTGCCTTGTAGAGCTTGCCAATGGCATGCCTTGGCATGGTC
1 TTACATGGTATCCTTGCCTTATAGAGCTTACCAATGCCATGCCTTGGCATGGTC
*
46471557 TTACTTGGTATCCTT
1 TTACATGGTATCCTT
46471572 CAACCCTAAT
Statistics
Matches: 96, Mismatches: 24, Indels: 5
0.77 0.19 0.04
Matches are distributed among these distances:
53 23 0.24
54 70 0.73
55 3 0.03
ACGTcount: A:0.18, C:0.23, G:0.21, T:0.38
Consensus pattern (54 bp):
TTACATGGTATCCTTGCCTTATAGAGCTTACCAATGCCATGCCTTGGCATGGTC
Found at i:46481660 original size:21 final size:20
Alignment explanation
Indices: 46481628--46481668 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 20
46481618 ATAAGCATGT
46481628 ATTTTGATGTTT-ACTGATAG
1 ATTTTGATGTTTGA-TGATAG
46481648 ATTTTGAATGTTTGATGATAG
1 ATTTTG-ATGTTTGATGATAG
46481669 TTATACAAGT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 6 0.32
21 12 0.63
22 1 0.05
ACGTcount: A:0.27, C:0.02, G:0.22, T:0.49
Consensus pattern (20 bp):
ATTTTGATGTTTGATGATAG
Found at i:46483871 original size:17 final size:17
Alignment explanation
Indices: 46483849--46483886 Score: 67
Period size: 17 Copynumber: 2.2 Consensus size: 17
46483839 AGGACTAACG
46483849 TAGCATATGTGAGAGTC
1 TAGCATATGTGAGAGTC
*
46483866 TAGCATGTGTGAGAGTC
1 TAGCATATGTGAGAGTC
46483883 TAGC
1 TAGC
46483887 TATACATATT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.26, C:0.13, G:0.32, T:0.29
Consensus pattern (17 bp):
TAGCATATGTGAGAGTC
Found at i:46489412 original size:42 final size:42
Alignment explanation
Indices: 46489358--46489444 Score: 131
Period size: 42 Copynumber: 2.1 Consensus size: 42
46489348 AAATAAAAAA
* * *
46489358 TTTCATAAAATCCCAAAATATTTTTTTGTTTTTGTTTTTAATT
1 TTTCATAAAATCCAAAAATATTTTTCT-TCTTTGTTTTTAATT
46489401 TTTCA-AAAATCCAAAAATATTTTTCTTCTTTGTTTTTAATT
1 TTTCATAAAATCCAAAAATATTTTTCTTCTTTGTTTTTAATT
46489442 TTT
1 TTT
46489445 GTTATTGCAT
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
41 17 0.41
42 19 0.46
43 5 0.12
ACGTcount: A:0.29, C:0.10, G:0.03, T:0.57
Consensus pattern (42 bp):
TTTCATAAAATCCAAAAATATTTTTCTTCTTTGTTTTTAATT
Found at i:46489415 original size:41 final size:43
Alignment explanation
Indices: 46489358--46489444 Score: 126
Period size: 41 Copynumber: 2.1 Consensus size: 43
46489348 AAATAAAAAA
* *
46489358 TTTCATAAAATCCC-AAAATATTTTTTTGTTTTTGTTTTTAATT
1 TTTCATAAAATCCCAAAAATATTTTTCT-TCTTTGTTTTTAATT
46489401 TTTCA-AAAAT-CCAAAAATATTTTTCTTCTTTGTTTTTAATT
1 TTTCATAAAATCCCAAAAATATTTTTCTTCTTTGTTTTTAATT
46489442 TTT
1 TTT
46489445 GTTATTGCAT
Statistics
Matches: 41, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
41 19 0.46
42 17 0.41
43 5 0.12
ACGTcount: A:0.29, C:0.10, G:0.03, T:0.57
Consensus pattern (43 bp):
TTTCATAAAATCCCAAAAATATTTTTCTTCTTTGTTTTTAATT
Found at i:46491476 original size:33 final size:36
Alignment explanation
Indices: 46491435--46491514 Score: 103
Period size: 38 Copynumber: 2.2 Consensus size: 36
46491425 TTTTAGGGTT
46491435 TTTATTTTT-C-TCT-TCTTCTGCCTTAGATTAGAG
1 TTTATTTTTGCATCTATCTTCTGCCTTAGATTAGAG
* *
46491468 TTTATTTTTATGCATTTATTTTCTGCCTTAGATTAGAG
1 TTTA-TTTT-TGCATCTATCTTCTGCCTTAGATTAGAG
46491506 TTTATTTTT
1 TTTATTTTT
46491515 ATGCATTTAC
Statistics
Matches: 40, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
33 4 0.10
34 4 0.10
35 1 0.03
36 2 0.05
37 6 0.15
38 23 0.57
ACGTcount: A:0.17, C:0.12, G:0.11, T:0.59
Consensus pattern (36 bp):
TTTATTTTTGCATCTATCTTCTGCCTTAGATTAGAG
Found at i:46491494 original size:38 final size:38
Alignment explanation
Indices: 46491450--46491523 Score: 148
Period size: 38 Copynumber: 1.9 Consensus size: 38
46491440 TTTTCTCTTC
46491450 TTCTGCCTTAGATTAGAGTTTATTTTTATGCATTTATT
1 TTCTGCCTTAGATTAGAGTTTATTTTTATGCATTTATT
46491488 TTCTGCCTTAGATTAGAGTTTATTTTTATGCATTTA
1 TTCTGCCTTAGATTAGAGTTTATTTTTATGCATTTA
46491524 CTTCTTGTTC
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 36 1.00
ACGTcount: A:0.22, C:0.11, G:0.14, T:0.54
Consensus pattern (38 bp):
TTCTGCCTTAGATTAGAGTTTATTTTTATGCATTTATT
Found at i:46494930 original size:33 final size:34
Alignment explanation
Indices: 46494893--46494957 Score: 82
Period size: 35 Copynumber: 1.9 Consensus size: 34
46494883 AGAAAGAATT
46494893 TGAAAGA-A-AAAAAGA-AATGAAAGAAAAAGAGTG
1 TGAAAGAGACAAAAAGAGAATG--AGAAAAAGAGTG
46494926 TGAAAGAGAGCAAAAAGAGAATGAGAAAAAGA
1 TGAAAGAGA-CAAAAAGAGAATGAGAAAAAGA
46494958 AAAATGAAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
33 7 0.25
34 1 0.04
35 9 0.32
36 7 0.25
37 4 0.14
ACGTcount: A:0.65, C:0.02, G:0.26, T:0.08
Consensus pattern (34 bp):
TGAAAGAGACAAAAAGAGAATGAGAAAAAGAGTG
Found at i:46494979 original size:18 final size:17
Alignment explanation
Indices: 46494950--46495012 Score: 56
Period size: 18 Copynumber: 3.5 Consensus size: 17
46494940 AAGAGAATGA
46494950 GAAAAAGAAAAATGAAATT
1 GAAAAAG-AAAA-GAAATT
46494969 GAAAAAGAAAA-AGAATT
1 GAAAAAGAAAAGA-AATT
* *
46494986 TAATCAAGAAAAGAAAATT
1 GAA-AAAGAAAAG-AAATT
46495005 GAAAAAGA
1 GAAAAAGA
46495013 GATTGAGTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 9
0.73 0.08 0.18
Matches are distributed among these distances:
16 1 0.03
17 6 0.17
18 15 0.42
19 13 0.36
20 1 0.03
ACGTcount: A:0.68, C:0.02, G:0.16, T:0.14
Consensus pattern (17 bp):
GAAAAAGAAAAGAAATT
Found at i:46504414 original size:29 final size:29
Alignment explanation
Indices: 46504372--46504468 Score: 142
Period size: 29 Copynumber: 3.4 Consensus size: 29
46504362 CATGAAATTG
46504372 GCACTAAGTGTGCGGGTTCAAATTGTATA
1 GCACTAAGTGTGCGGGTTCAAATTGTATA
*
46504401 GCACTAAGTGTGCGGGTTCAAGTTGTATA
1 GCACTAAGTGTGCGGGTTCAAATTGTATA
* * *
46504430 GCACTAAGTGTGCGAGTTC-GATTATATA
1 GCACTAAGTGTGCGGGTTCAAATTGTATA
*
46504458 ACACTAAGTGT
1 GCACTAAGTGT
46504469 ACGGACTTAC
Statistics
Matches: 62, Mismatches: 6, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
28 16 0.26
29 46 0.74
ACGTcount: A:0.28, C:0.14, G:0.27, T:0.31
Consensus pattern (29 bp):
GCACTAAGTGTGCGGGTTCAAATTGTATA
Found at i:46505750 original size:11 final size:12
Alignment explanation
Indices: 46505723--46505751 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
46505713 ATAATAAGAA
46505723 CATTCAAATATT
1 CATTCAAATATT
46505735 CATTCAAATA-T
1 CATTCAAATATT
46505746 CATTCA
1 CATTCA
46505752 TCATTAATAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
11 7 0.41
12 10 0.59
ACGTcount: A:0.41, C:0.21, G:0.00, T:0.38
Consensus pattern (12 bp):
CATTCAAATATT
Found at i:46512281 original size:67 final size:65
Alignment explanation
Indices: 46512146--46512353 Score: 183
Period size: 64 Copynumber: 3.2 Consensus size: 65
46512136 CCTAATTTTG
* * ** * * * * *
46512146 GCTCTCTTGTAC-ACATGGTGAACACTTACTACCACCCATGTGACCTAGC--CAGCTTATCTCGT
1 GCTCTCTTGT-CTACATGGTGTACACATGGTAACACCCATGCGACCTAGCTACATCATATCTCAT
46512208 A
65 A
* * *
46512209 GCTCTCTTGTCTACATGGTGTCCTTCACCTGG-AACCACGCATGCGACCTAGCTACAT-ATATCT
1 GCTCTCTTGTCTACATGGTG---TACACATGGTAA-CACCCATGCGACCTAGCTACATCATATCT
46512272 CATA
62 CATA
* *
46512276 GCTCTCTTGTTTGCATGGTGTACACATGGTAACACCCATGCGACCTAGCTACATCATAATGTCTC
1 GCTCTCTTGTCTACATGGTGTACACATGGTAACACCCATGCGACCTAGCTACATCAT-A--TCTC
46512341 ATA
63 ATA
46512344 GCTCTCTTGT
1 GCTCTCTTGT
46512354 ACACATGATG
Statistics
Matches: 117, Mismatches: 16, Indels: 19
0.77 0.11 0.12
Matches are distributed among these distances:
62 1 0.01
63 18 0.15
64 28 0.24
65 5 0.04
66 20 0.17
67 26 0.22
68 19 0.16
ACGTcount: A:0.23, C:0.30, G:0.17, T:0.31
Consensus pattern (65 bp):
GCTCTCTTGTCTACATGGTGTACACATGGTAACACCCATGCGACCTAGCTACATCATATCTCATA
Found at i:46515540 original size:119 final size:120
Alignment explanation
Indices: 46515358--46515580 Score: 292
Period size: 119 Copynumber: 1.9 Consensus size: 120
46515348 TCCTCGTTCA
*
46515358 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
* *
46515423 TTAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
66 ATAGTAACTTAGCACAAA-GCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
* * * **
46515478 AATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTTGCACAAATGCCTTC-GGATCTTAGTCCGG
1 AATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
* * *
46515540 ATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
64 ATATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGA
46515581 CATCATTCAA
Statistics
Matches: 89, Mismatches: 11, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
118 4 0.04
119 65 0.73
120 20 0.22
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (120 bp):
AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
ATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
Found at i:46515580 original size:40 final size:40
Alignment explanation
Indices: 46515356--46515580 Score: 278
Period size: 40 Copynumber: 5.7 Consensus size: 40
46515346 GCTCCTCGTT
* *
46515356 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
46515396 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
46515436 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* * *
46515476 CCAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTTGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * * *
46515515 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
46515556 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
46515581 CATCATTCAA
Statistics
Matches: 163, Mismatches: 16, Indels: 12
0.85 0.08 0.06
Matches are distributed among these distances:
38 2 0.01
39 30 0.18
40 119 0.73
41 12 0.07
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:46524534 original size:39 final size:40
Alignment explanation
Indices: 46524417--46524601 Score: 198
Period size: 40 Copynumber: 4.7 Consensus size: 40
46524407 GCTACTCGTT
* *
46524417 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCCCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
* * *
46524457 CAATTGCCTTTGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
46524497 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * * *
46524536 CAAATGCCTTC-GGATCTTAGTCCAGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
46524577 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
46524602 CATCATTCAA
Statistics
Matches: 120, Mismatches: 20, Indels: 10
0.80 0.13 0.07
Matches are distributed among these distances:
38 2 0.02
39 33 0.28
40 72 0.60
41 13 0.11
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:46540773 original size:79 final size:81
Alignment explanation
Indices: 46540662--46540851 Score: 219
Period size: 79 Copynumber: 2.4 Consensus size: 81
46540652 GCTACTCGTT
* * *
46540662 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAATTGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
46540725 GGATTTAGTAAC-TCGCA
64 GGATATAGTAACTTAGCA
* * **
46540742 CAAATGCCTTCTGG-CTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
* *
46540806 ATATGGTCACTTAGCA
66 ATATAGTAACTTAGCA
46540822 CAAA-GCCTTCGGGACTTAGCCCGGACATTA
1 CAAATGCCTTCGGGACTTAGCCCGGA-ATTA
46540852 TTCAAATAAC
Statistics
Matches: 93, Mismatches: 12, Indels: 9
0.82 0.11 0.08
Matches are distributed among these distances:
78 3 0.03
79 53 0.57
80 33 0.35
81 4 0.04
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
ATATAGTAACTTAGCA
Found at i:46540846 original size:40 final size:40
Alignment explanation
Indices: 46540643--46540846 Score: 220
Period size: 40 Copynumber: 5.1 Consensus size: 40
46540633 CGGAATTTAA
** *
46540643 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
46540683 CCGGTTATAGTAACTCGCACAATTGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
46540723 CCGGATTTAGTAACTCGCACAAATGCCTTCTGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
46540762 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
46540802 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
46540842 CCGGA
1 CCGGA
46540847 CATTATTCAA
Statistics
Matches: 138, Mismatches: 19, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.24
40 91 0.66
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:46548696 original size:79 final size:82
Alignment explanation
Indices: 46548585--46548769 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
46548575 GCTACTCGTT
* * *
46548585 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAATTGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
46548648 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
46548665 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
46548728 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
46548745 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
46548770 CATCATTCAA
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.59
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:46548769 original size:40 final size:40
Alignment explanation
Indices: 46548566--46548769 Score: 229
Period size: 40 Copynumber: 5.1 Consensus size: 40
46548556 CGGAATTTAA
** *
46548566 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
46548606 CCGGTTATAGTAACTCGCACAATTGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
46548646 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
46548685 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
46548725 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
46548765 CCGGA
1 CCGGA
46548770 CATCATTCAA
Statistics
Matches: 139, Mismatches: 18, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.24
40 92 0.66
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:46550669 original size:40 final size:40
Alignment explanation
Indices: 46550625--46550889 Score: 349
Period size: 40 Copynumber: 6.7 Consensus size: 40
46550615 GCTCCTCGTT
*
46550625 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
* *
46550665 CAAATGCCTTCGGGAGTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
46550705 CAAATGCTTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
46550745 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * *
46550785 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
46550824 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
46550865 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
46550890 CATCATTCAA
Statistics
Matches: 201, Mismatches: 19, Indels: 10
0.87 0.08 0.04
Matches are distributed among these distances:
38 2 0.01
39 32 0.16
40 154 0.77
41 13 0.06
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:46550880 original size:119 final size:121
Alignment explanation
Indices: 46550625--46550889 Score: 351
Period size: 119 Copynumber: 2.2 Consensus size: 121
46550615 GCTCCTCGTT
* *
46550625 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGAGTTAACCCG
1 CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
* * * *
46550689 GATTTAGTAACTCGCACAAATGCTTTCGGGACTTAACCCGGATTTAGTAACTCGCA
66 GAATTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATAGTAACTAGCA
* * *
46550745 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCACCAATGCCTTCGGG-CTTAGCCCG
1 CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
* ** * *
46550808 GAATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
66 GAATTAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGGATATAGTAAC-TAGCA
46550865 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
46550890 CATCATTCAA
Statistics
Matches: 127, Mismatches: 15, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
118 3 0.02
119 66 0.52
120 56 0.44
121 2 0.02
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (121 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
GAATTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATAGTAACTAGCA
Found at i:46552791 original size:40 final size:40
Alignment explanation
Indices: 46552747--46553011 Score: 349
Period size: 40 Copynumber: 6.7 Consensus size: 40
46552737 GCTCCTCGTT
*
46552747 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
46552787 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
46552827 CAAATGCTTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
46552867 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * *
46552907 CCAATGCCTTCGGG-CTTAGCCTGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
46552946 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
46552987 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
46553012 CATCATTCAA
Statistics
Matches: 201, Mismatches: 19, Indels: 10
0.87 0.08 0.04
Matches are distributed among these distances:
38 2 0.01
39 31 0.15
40 155 0.77
41 13 0.06
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:46553002 original size:119 final size:121
Alignment explanation
Indices: 46552747--46553011 Score: 351
Period size: 119 Copynumber: 2.2 Consensus size: 121
46552737 GCTCCTCGTT
*
46552747 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
1 CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
* * * *
46552811 GATTTAGTAACTCGCACAAATGCTTTCGGGACTTAACCCGGATTTAGTAACTCGCA
66 GAATTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATAGTAACTAGCA
* * * *
46552867 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCACCAATGCCTTCGGG-CTTAGCCTG
1 CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
* ** * *
46552930 GAATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
66 GAATTAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGGATATAGTAAC-TAGCA
46552987 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
46553012 CATCATTCAA
Statistics
Matches: 127, Mismatches: 15, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
118 3 0.02
119 66 0.52
120 56 0.44
121 2 0.02
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (121 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
GAATTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATAGTAACTAGCA
Found at i:46561346 original size:34 final size:34
Alignment explanation
Indices: 46561267--46561360 Score: 107
Period size: 34 Copynumber: 2.8 Consensus size: 34
46561257 CTGGTACTGT
* **
46561267 ACTGAAATGGGCTAAGGCCCACACTAATACAGTT
1 ACTGAAATGGGCTAAGGCCCACACTGATACAGCA
* * **
46561301 ACTGTATTGGGCTAAGGCCCACACTGATATTGCA
1 ACTGAAATGGGCTAAGGCCCACACTGATACAGCA
* *
46561335 ACTGAAATGGGCTTAGGCCCAGACTG
1 ACTGAAATGGGCTAAGGCCCACACTG
46561361 TTCAACACTG
Statistics
Matches: 49, Mismatches: 11, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
34 49 1.00
ACGTcount: A:0.30, C:0.23, G:0.24, T:0.22
Consensus pattern (34 bp):
ACTGAAATGGGCTAAGGCCCACACTGATACAGCA
Found at i:46567080 original size:21 final size:23
Alignment explanation
Indices: 46567040--46567081 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
46567030 TAGAAAAATT
*
46567040 TTGGTTTCTTATTGAATAAACCC
1 TTGGTTTCTTACTGAATAAACCC
46567063 TTGGTTTC-TACT-AATAAAC
1 TTGGTTTCTTACTGAATAAAC
46567082 TCTTAAATTA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 7 0.39
22 3 0.17
23 8 0.44
ACGTcount: A:0.29, C:0.17, G:0.12, T:0.43
Consensus pattern (23 bp):
TTGGTTTCTTACTGAATAAACCC
Found at i:46576169 original size:13 final size:13
Alignment explanation
Indices: 46576151--46576175 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
46576141 TAATGGTATA
46576151 TTGAATCCATGAT
1 TTGAATCCATGAT
46576164 TTGAATCCATGA
1 TTGAATCCATGA
46576176 AAATTTAGTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TTGAATCCATGAT
Found at i:46577939 original size:49 final size:47
Alignment explanation
Indices: 46577855--46578167 Score: 500
Period size: 47 Copynumber: 6.6 Consensus size: 47
46577845 TATTTGAATA
*
46577855 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
46577902 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
46577951 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
46578000 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
46578047 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * * *
46578094 AATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
46578141 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
46578168 TCCCGAAGGG
Statistics
Matches: 251, Mismatches: 13, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
47 156 0.62
49 95 0.38
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:46586323 original size:31 final size:31
Alignment explanation
Indices: 46586281--46586356 Score: 109
Period size: 31 Copynumber: 2.5 Consensus size: 31
46586271 AACGGTTACT
* *
46586281 GGGCTGAAGCCTTTTCATAAATCATATCACTC
1 GGGCCGAAGCCTTTTAATAAATCATATCA-TC
46586313 -GGCCGAAGCCTTTTAATAAATCATATCATC
1 GGGCCGAAGCCTTTTAATAAATCATATCATC
*
46586343 GGGCCGTAGCCTTT
1 GGGCCGAAGCCTTT
46586357 ACTGTAAACG
Statistics
Matches: 40, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
30 2 0.05
31 38 0.95
ACGTcount: A:0.26, C:0.25, G:0.18, T:0.30
Consensus pattern (31 bp):
GGGCCGAAGCCTTTTAATAAATCATATCATC
Found at i:46586646 original size:26 final size:26
Alignment explanation
Indices: 46586562--46586723 Score: 233
Period size: 26 Copynumber: 6.3 Consensus size: 26
46586552 TTGGAGGCCT
46586562 AGCCTCTTTT-AAT-AACTGGGGCA-A
1 AGCC-CTTTTCAATAAACTGGGGCATA
*
46586586 AGCCCTTTTCAGTAAACTGGGGCA-A
1 AGCCCTTTTCAATAAACTGGGGCATA
*
46586611 AGCCCTTTTCGATAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
*
46586637 AGCCCTTTTCAATAAATTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
** *
46586663 AGCCCTTTTCGGTAAACTGAGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
46586689 AGCCCTTTTCAATAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
46586715 AGCCCTTTT
1 AGCCCTTTT
46586724 GCACTTCCTC
Statistics
Matches: 123, Mismatches: 12, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
23 5 0.04
24 6 0.05
25 33 0.27
26 79 0.64
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
AGCCCTTTTCAATAAACTGGGGCATA
Found at i:46587604 original size:27 final size:27
Alignment explanation
Indices: 46587525--46587611 Score: 122
Period size: 27 Copynumber: 3.2 Consensus size: 27
46587515 TATTCGTCAT
* *
46587525 TTTACCATACAGGGG-TATTACGGTCAC
1 TTTACCCTACAGGGGCT-TTACGGTCTC
46587552 TTTACCCTACAGGGGCTTTACGGTCTC
1 TTTACCCTACAGGGGCTTTACGGTCTC
* *
46587579 TTTACCCTATAGGGGCTTTACGGTCTT
1 TTTACCCTACAGGGGCTTTACGGTCTC
46587606 TTTACC
1 TTTACC
46587612 TAATAGGGGT
Statistics
Matches: 55, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 54 0.98
28 1 0.02
ACGTcount: A:0.18, C:0.25, G:0.21, T:0.36
Consensus pattern (27 bp):
TTTACCCTACAGGGGCTTTACGGTCTC
Found at i:46587695 original size:27 final size:27
Alignment explanation
Indices: 46587642--46588000 Score: 275
Period size: 27 Copynumber: 13.3 Consensus size: 27
46587632 TTTCATCCTA
* * * *
46587642 CAAGGGTGTTTTGGTAAATCTACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAT
** ** *
46587669 CAAGGGTATTTCAGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAT
* *** *
46587696 CAATGGTATTTCCATAATTTTTAGAAAGT
1 CAAGGGTATTTTGGTAA-TTTTACAAA-T
* **
46587725 CAAGGGTATTTCT-GTAACTTTGTAAAT
1 CAAGGGTATTT-TGGTAATTTTACAAAT
46587752 CAAGGGTATTTTGGTAATTTTACAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAT
* * *
46587779 TAAGGGTATTTCGGTAATTTCACAAA-
1 CAAGGGTATTTTGGTAATTTTACAAAT
*
46587805 CTAGTGGTATTTTGGTAATTTTACAAA-
1 CAAG-GGTATTTTGGTAATTTTACAAAT
*
46587832 CTAGGGGTATTTTGGTAATTTTACAAAT
1 C-AAGGGTATTTTGGTAATTTTACAAAT
** * *
46587860 TGAGGGTATTTCGGTAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAT
* *
46587887 CAAGGGTATTTTAGCAATTTTACAAA-
1 CAAGGGTATTTTGGTAATTTTACAAAT
* **
46587913 CTA-GGTATTTTGGTAATTTTACTGAT
1 CAAGGGTATTTTGGTAATTTTACAAAT
* *
46587939 CGAGGGTATTTTGGTAATCTTGTA-AACT
1 CAAGGGTATTTTGGTAAT-TT-TACAAAT
*
46587967 -AAGGGTATTTTAGTAATTTTGA-AAAT
1 CAAGGGTATTTTGGTAATTTT-ACAAAT
*
46587993 CGAGGGTA
1 CAAGGGTA
46588001 AAATAGTAAT
Statistics
Matches: 265, Mismatches: 54, Indels: 26
0.77 0.16 0.08
Matches are distributed among these distances:
25 19 0.07
26 13 0.05
27 201 0.76
28 17 0.06
29 15 0.06
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.39
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTTTACAAAT
Found at i:46587850 original size:81 final size:78
Alignment explanation
Indices: 46587754--46587986 Score: 306
Period size: 81 Copynumber: 2.9 Consensus size: 78
46587744 TTGTAAATCA
* *
46587754 AGGGTATTTTGGTAATTTTACAAATTAAGGGTATTTCGGTAATTTCACAAACTAGTGGTATTTTG
1 AGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTT-ACAAACTAG-GGTATTTTA
46587819 GTAATTTTACAAACT
64 GTAATTTTACAAACT
*
46587834 AGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTTACAAACCAAGGGTATTTT
1 A-GGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAA-TTTACAAA-CTAGGGTATTTT
*
46587899 AGCAATTTTACAAACT
63 AGTAATTTTACAAACT
** * * **
46587915 A-GGTATTTTGGTAATTTTACTGATCGAGGGTATTTTGGTAATCTTGTAAACTAAGGGTATTTTA
1 AGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAAT-TTACAAACT-AGGGTATTTTA
46587979 GTAATTTT
64 GTAATTTT
46587987 GAAAATCGAG
Statistics
Matches: 136, Mismatches: 12, Indels: 11
0.86 0.08 0.07
Matches are distributed among these distances:
78 2 0.01
79 59 0.43
80 1 0.01
81 68 0.50
82 6 0.04
ACGTcount: A:0.30, C:0.08, G:0.20, T:0.42
Consensus pattern (78 bp):
AGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTACAAACTAGGGTATTTTAGT
AATTTTACAAACT
Found at i:46588007 original size:27 final size:27
Alignment explanation
Indices: 46587977--46588108 Score: 142
Period size: 27 Copynumber: 4.9 Consensus size: 27
46587967 AAGGGTATTT
*
46587977 TAGTAATTTTGAAAATCGAGGGTAAAA
1 TAGTAATTCTGAAAATCGAGGGTAAAA
* *
46588004 TAGTAATTCTGTAAATCAAGGGTAAAA
1 TAGTAATTCTGAAAATCGAGGGTAAAA
* *
46588031 CAGTAATTCT-ATAAGTCGAGGGTAAAA
1 TAGTAATTCTGA-AAATCGAGGGTAAAA
* *
46588058 TGGTAATTCTGTAAATCGAGGGTAAAA
1 TAGTAATTCTGAAAATCGAGGGTAAAA
** *
46588085 CGGTAATTCT-ATAAATTGAGGGTA
1 TAGTAATTCTGA-AAATCGAGGGTA
46588109 TTTTGGTAAT
Statistics
Matches: 88, Mismatches: 14, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
27 88 1.00
ACGTcount: A:0.40, C:0.08, G:0.23, T:0.30
Consensus pattern (27 bp):
TAGTAATTCTGAAAATCGAGGGTAAAA
Found at i:46588116 original size:27 final size:27
Alignment explanation
Indices: 46588086--46588138 Score: 88
Period size: 27 Copynumber: 2.0 Consensus size: 27
46588076 AGGGTAAAAC
*
46588086 GGTAATTCTATAAATTGAGGGTATTTT
1 GGTAATTTTATAAATTGAGGGTATTTT
*
46588113 GGTAATTTTATAATTTGAGGGTATTT
1 GGTAATTTTATAAATTGAGGGTATTT
46588139 CAGAAATTTG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.28, C:0.02, G:0.23, T:0.47
Consensus pattern (27 bp):
GGTAATTTTATAAATTGAGGGTATTTT
Found at i:46588119 original size:54 final size:54
Alignment explanation
Indices: 46587989--46588108 Score: 195
Period size: 54 Copynumber: 2.2 Consensus size: 54
46587979 GTAATTTTGA
*
46587989 AAATCGAGGGTAAAATAGTAATTCTGTAAATCAAGGGTAAAACAGTAATTCTAT
1 AAATCGAGGGTAAAATGGTAATTCTGTAAATCAAGGGTAAAACAGTAATTCTAT
* * *
46588043 AAGTCGAGGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTAT
1 AAATCGAGGGTAAAATGGTAATTCTGTAAATCAAGGGTAAAACAGTAATTCTAT
*
46588097 AAATTGAGGGTA
1 AAATCGAGGGTA
46588109 TTTTGGTAAT
Statistics
Matches: 60, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
54 60 1.00
ACGTcount: A:0.41, C:0.08, G:0.23, T:0.28
Consensus pattern (54 bp):
AAATCGAGGGTAAAATGGTAATTCTGTAAATCAAGGGTAAAACAGTAATTCTAT
Found at i:46588133 original size:54 final size:54
Alignment explanation
Indices: 46587989--46588135 Score: 177
Period size: 54 Copynumber: 2.7 Consensus size: 54
46587979 GTAATTTTGA
* * *
46587989 AAATCGAGGGTAAAATAGTAATTCTGTAAATCAAGGGTAAAACAGTAATTCTAT
1 AAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACAGTAATTCTAT
* * *
46588043 AAGTCGAGGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTAT
1 AAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACAGTAATTCTAT
* *** * * *
46588097 AAATTGAGGGTATTTTGGTAATTTTATAATTTGAGGGTA
1 AAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTA
46588136 TTTCAGAAAT
Statistics
Matches: 80, Mismatches: 13, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
54 80 1.00
ACGTcount: A:0.38, C:0.07, G:0.23, T:0.32
Consensus pattern (54 bp):
AAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACAGTAATTCTAT
Found at i:46588146 original size:27 final size:27
Alignment explanation
Indices: 46588089--46588147 Score: 73
Period size: 27 Copynumber: 2.2 Consensus size: 27
46588079 GTAAAACGGT
* ** *
46588089 AATTCTATAAATTGAGGGTATTTTGGT
1 AATTTTATAAATTGAGGGTATTTCAGA
*
46588116 AATTTTATAATTTGAGGGTATTTCAGA
1 AATTTTATAAATTGAGGGTATTTCAGA
46588143 AATTT
1 AATTT
46588148 GGTAAACTAA
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.32, C:0.03, G:0.19, T:0.46
Consensus pattern (27 bp):
AATTTTATAAATTGAGGGTATTTCAGA
Found at i:46601058 original size:27 final size:27
Alignment explanation
Indices: 46601015--46601324 Score: 345
Period size: 27 Copynumber: 11.5 Consensus size: 27
46601005 AGTGGATAAG
46601015 TTGTAAAATTACCAAAATACCCCTGGT
1 TTGTAAAATTACCAAAATACCCCTGGT
* * *
46601042 TTGTAAAAGTACTAAAATACCCTTGGT
1 TTGTAAAATTACCAAAATACCCCTGGT
* * *
46601069 TTATAAAATTAGCAAAATACCCTTGGT
1 TTGTAAAATTACCAAAATACCCCTGGT
* * *
46601096 TTATAAAATTACCAAAATACCCTTAGT
1 TTGTAAAATTACCAAAATACCCCTGGT
*
46601123 TTGTAAAATTACCAAAATATCCCTGGT
1 TTGTAAAATTACCAAAATACCCCTGGT
*
46601150 TTGTAAAATTACCAAAATACCCCTAGT
1 TTGTAAAATTACCAAAATACCCCTGGT
46601177 TTGTAAAATTACCAAAATACCCCTGGT
1 TTGTAAAATTACCAAAATACCCCTGGT
*
46601204 TTGTAAAATTACCAAAATACCCCTGAT
1 TTGTAAAATTACCAAAATACCCCTGGT
* ** **
46601231 TTGTGAAATTACTGAAATA-CCCTCGAC
1 TTGTAAAATTACCAAAATACCCCT-GGT
* * ** **
46601258 CTATAAAATTACTGAAATA-CCCTCGAC
1 TTGTAAAATTACCAAAATACCCCT-GGT
* *
46601285 TTGTAAAATTACCAAAGTACCCCTGAT
1 TTGTAAAATTACCAAAATACCCCTGGT
* *
46601312 TTATAGAATTACC
1 TTGTAAAATTACC
46601325 GTTTTACCCT
Statistics
Matches: 249, Mismatches: 32, Indels: 4
0.87 0.11 0.01
Matches are distributed among these distances:
26 4 0.02
27 241 0.97
28 4 0.02
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.31
Consensus pattern (27 bp):
TTGTAAAATTACCAAAATACCCCTGGT
Found at i:46601333 original size:81 final size:81
Alignment explanation
Indices: 46601042--46601361 Score: 209
Period size: 81 Copynumber: 4.0 Consensus size: 81
46601032 TACCCCTGGT
* * * * * * * * *** *
46601042 TTGTAAAAGTACTAAAATACCCTTGGTTTATAAAATTAGCAAAATACCCTTGGTTTATAAAATTA
1 TTGTAAAATTACCAAAATACCCCTGATTTATGAAATTACCGAAATACCCTCGACCTACAAAATTA
* * * *
46601107 CCAAAATACCCT-TAGT
66 TCGAAATACCCTCGA-C
* * * * * * ** **
46601123 TTGTAAAATTACCAAAATATCCCTGGTTTGTAAAATTACCAAAATACCC-CTAGTTTGTAAAATT
1 TTGTAAAATTACCAAAATACCCCTGATTTATGAAATTACCGAAATACCCTCGA-CCTACAAAATT
* * **
46601187 ACCAAAATACCC-CTGGT
65 ATCGAAATACCCTC-GAC
* * *
46601204 TTGTAAAATTACCAAAATACCCCTGATTTGTGAAATTACTGAAATACCCTCGACCTATAAAATTA
1 TTGTAAAATTACCAAAATACCCCTGATTTATGAAATTACCGAAATACCCTCGACCTACAAAATTA
46601269 -CTGAAATACCCTCGAC
66 TC-GAAATACCCTCGAC
* *** **
46601285 TTGTAAAATTACCAAAGTACCCCTGATTTAT-AGAATTACCGTTTTACCCTCGATTTACAAAATT
1 TTGTAAAATTACCAAAATACCCCTGATTTATGA-AATTACCGAAATACCCTCGACCTACAAAATT
46601349 ATCGAAATACCCT
65 ATCGAAATACCCT
46601362 TGTAGGGTAG
Statistics
Matches: 198, Mismatches: 33, Indels: 16
0.80 0.13 0.06
Matches are distributed among these distances:
80 2 0.01
81 192 0.97
82 4 0.02
ACGTcount: A:0.38, C:0.21, G:0.10, T:0.32
Consensus pattern (81 bp):
TTGTAAAATTACCAAAATACCCCTGATTTATGAAATTACCGAAATACCCTCGACCTACAAAATTA
TCGAAATACCCTCGAC
Found at i:46601359 original size:27 final size:26
Alignment explanation
Indices: 46601236--46601361 Score: 101
Period size: 27 Copynumber: 4.7 Consensus size: 26
46601226 CTGATTTGTG
*
46601236 AAATTACTGAAATACCCTCGACCTATA
1 AAATTAC-GAAATACCCTCGACTTATA
*
46601263 AAATTACTGAAATACCCTCGACTTGTA
1 AAATTAC-GAAATACCCTCGACTTATA
* *
46601290 AAATTACCAAAGTACCC-CTGATTTATA
1 AAATTACGAAA-TACCCTC-GACTTATA
* *** * *
46601317 GAATTACCGTTTTACCCTCGATTTACA
1 AAATTA-CGAAATACCCTCGACTTATA
46601344 AAATTATCGAAATACCCT
1 AAATTA-CGAAATACCCT
46601362 TGTAGGGTAG
Statistics
Matches: 79, Mismatches: 16, Indels: 8
0.77 0.16 0.08
Matches are distributed among these distances:
26 4 0.05
27 73 0.92
28 2 0.03
ACGTcount: A:0.37, C:0.24, G:0.09, T:0.30
Consensus pattern (26 bp):
AAATTACGAAATACCCTCGACTTATA
Found at i:46601381 original size:27 final size:27
Alignment explanation
Indices: 46601351--46601425 Score: 123
Period size: 27 Copynumber: 2.8 Consensus size: 27
46601341 ACAAAATTAT
46601351 CGAAATACCCTTGTAGGGTAGAAATAC
1 CGAAATACCCTTGTAGGGTAGAAATAC
46601378 CGAAATACCCTTGTAGGGTAGAAATAC
1 CGAAATACCCTTGTAGGGTAGAAATAC
* * *
46601405 TGAAATACCCCTATAGGGTAG
1 CGAAATACCCTTGTAGGGTAG
46601426 GACTACCAGT
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 45 1.00
ACGTcount: A:0.36, C:0.19, G:0.23, T:0.23
Consensus pattern (27 bp):
CGAAATACCCTTGTAGGGTAGAAATAC
Found at i:46602128 original size:27 final size:26
Alignment explanation
Indices: 46602084--46602134 Score: 66
Period size: 27 Copynumber: 1.9 Consensus size: 26
46602074 CTCGTTGCAA
*
46602084 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
46602111 TCTGGTGACTTCGTCACAATATCT
1 TCTGGTGACCTCGCCACAATATCT
46602135 AGCAACCTCG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 6 0.29
27 15 0.71
ACGTcount: A:0.18, C:0.27, G:0.20, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:46613128 original size:41 final size:41
Alignment explanation
Indices: 46613057--46613285 Score: 201
Period size: 41 Copynumber: 5.6 Consensus size: 41
46613047 ATTAGAGTGT
* * *
46613057 AAACAGAGGCACGCATGTGCAATTTAGGGGTACCAAAGTAC
1 AAACAGGGGCACGTATGTGCAATTCAGGGGTACCAAAGTAC
* * * * ***
46613098 AAATAGGGACACGTATGTGAAATTTAGGGGTAATGAAGTAC
1 AAACAGGGGCACGTATGTGCAATTCAGGGGTACCAAAGTAC
* * * * *
46613139 AAATAGGGGCATGTAAGTGCAATTCAGGGGGTATCAAAGTAG
1 AAACAGGGGCACGTATGTGCAATTCA-GGGGTACCAAAGTAC
* * * * * *
46613181 AAACAGGGTCACGTTTGTGCAATTCA-GGGTATCGAAGCAG
1 AAACAGGGGCACGTATGTGCAATTCAGGGGTACCAAAGTAC
* *
46613221 GAACAGGGGCACATATGTGCAATTCAGGGGTACCGAAA-TAC
1 AAACAGGGGCACGTATGTGCAATTCAGGGGTACC-AAAGTAC
* *
46613262 AAACAGGGGCATGTATGTACAATT
1 AAACAGGGGCACGTATGTGCAATT
46613286 TAAGAAATAA
Statistics
Matches: 149, Mismatches: 36, Indels: 6
0.78 0.19 0.03
Matches are distributed among these distances:
40 34 0.23
41 81 0.54
42 34 0.23
ACGTcount: A:0.35, C:0.14, G:0.29, T:0.21
Consensus pattern (41 bp):
AAACAGGGGCACGTATGTGCAATTCAGGGGTACCAAAGTAC
Found at i:46613226 original size:40 final size:40
Alignment explanation
Indices: 46613155--46613249 Score: 118
Period size: 40 Copynumber: 2.3 Consensus size: 40
46613145 GGGCATGTAA
* * * *
46613155 GTGCAATTCAGGGGGTATCAAAGTAGAAACAGGGTCACGTTT
1 GTGCAATTCA--GGGTATCAAAGCAGAAACAGGGGCACATAT
* *
46613197 GTGCAATTCAGGGTATCGAAGCAGGAACAGGGGCACATAT
1 GTGCAATTCAGGGTATCAAAGCAGAAACAGGGGCACATAT
46613237 GTGCAATTCAGGG
1 GTGCAATTCAGGG
46613250 GTACCGAAAT
Statistics
Matches: 47, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
40 37 0.79
42 10 0.21
ACGTcount: A:0.31, C:0.16, G:0.33, T:0.21
Consensus pattern (40 bp):
GTGCAATTCAGGGTATCAAAGCAGAAACAGGGGCACATAT
Found at i:46614886 original size:41 final size:41
Alignment explanation
Indices: 46614809--46614942 Score: 178
Period size: 41 Copynumber: 3.2 Consensus size: 41
46614799 ACGCCGCCAT
* *
46614809 GACCTTTAGTGGTGCTTTTTCCACAAATGCCGCTATAGAACA
1 GACCTTTAGTGGCGC-TTTTCCACAAATGCCACTATAGAACA
*
46614851 GACCTTTAGTGGCGCTTTGCCACAAATGCCACTATAGAACA
1 GACCTTTAGTGGCGCTTTTCCACAAATGCCACTATAGAACA
* * * *
46614892 GACCTTTAGAGGCGCTTTTCTCACAAACGTCACTAAAGAACA
1 GACCTTTAGTGGCGCTTTTC-CACAAATGCCACTATAGAACA
46614934 TGACCTTTA
1 -GACCTTTA
46614943 AAAAATATAT
Statistics
Matches: 82, Mismatches: 8, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
41 42 0.51
42 32 0.39
43 8 0.10
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.28
Consensus pattern (41 bp):
GACCTTTAGTGGCGCTTTTCCACAAATGCCACTATAGAACA
Found at i:46616308 original size:26 final size:26
Alignment explanation
Indices: 46616279--46616337 Score: 100
Period size: 26 Copynumber: 2.3 Consensus size: 26
46616269 GCCGATGTGG
*
46616279 GCCCACACACTTGTGTGGCCCAATAA
1 GCCCACACACTCGTGTGGCCCAATAA
*
46616305 GCCCACACACTCGTGTGGCCTAATAA
1 GCCCACACACTCGTGTGGCCCAATAA
46616331 GCCCACA
1 GCCCACA
46616338 TACTGGCCTT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 31 1.00
ACGTcount: A:0.27, C:0.37, G:0.19, T:0.17
Consensus pattern (26 bp):
GCCCACACACTCGTGTGGCCCAATAA
Found at i:46619966 original size:11 final size:12
Alignment explanation
Indices: 46619939--46619963 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
46619929 ATAATAAGCC
46619939 TTAATTTTTATA
1 TTAATTTTTATA
46619951 TTAATTTTTATA
1 TTAATTTTTATA
46619963 T
1 T
46619964 AATAAACCTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (12 bp):
TTAATTTTTATA
Found at i:46620928 original size:109 final size:113
Alignment explanation
Indices: 46620762--46621044 Score: 283
Period size: 115 Copynumber: 2.5 Consensus size: 113
46620752 GCGTTTATCT
* * * * **
46620762 ACTAGCACCGCTAAATCCCTACATATTGCGGTGTTTAAGAAAAAAATGCCACT-AAAAA-CCTAC
1 ACTAGCACCGCTAAAGCCCGACATATTGCGGAGTTTAA-ACAAAAATGCCACTAAAAAATCAAAC
*** *
46620825 AAAACGGTGTCGTTTTGATT-A-AAAA-AACATTTTGCGGCA-TTTTTA
65 AAAACGACATCATTTTGATTAACAAAATAACATTTTGCGGCATTTTTTA
* * *
46620870 ACCTAGCACCGCTAAA-CCCGGACCTATTGCGGCGTTTTAACAAAAATGCCACTAAAAAATCAAA
1 A-CTAGCACCGCTAAAGCCC-GACATATTGCGGAGTTTAAACAAAAATGCCACTAAAAAATCAAA
* * *
46620934 TAAAACGACATCATTTTGATTAAAACAAAATAACTTTTTGTGGCATTTTTTA
64 CAAAACGACATCATTTTGATT--AACAAAATAACATTTTGCGGCATTTTTTA
* * * * *
46620986 ACTAGCACCGCTAAAGCCCGACATATTACGGAGTTTCACCAAAAACGCCACTAAGAAAT
1 ACTAGCACCGCTAAAGCCCGACATATTGCGGAGTTTAAACAAAAATGCCACTAAAAAAT
46621045 TGTAACACCC
Statistics
Matches: 143, Mismatches: 21, Indels: 15
0.80 0.12 0.08
Matches are distributed among these distances:
108 17 0.12
109 34 0.24
110 18 0.13
113 1 0.01
114 4 0.03
115 59 0.41
116 10 0.07
ACGTcount: A:0.38, C:0.22, G:0.14, T:0.26
Consensus pattern (113 bp):
ACTAGCACCGCTAAAGCCCGACATATTGCGGAGTTTAAACAAAAATGCCACTAAAAAATCAAACA
AAACGACATCATTTTGATTAACAAAATAACATTTTGCGGCATTTTTTA
Found at i:46624294 original size:41 final size:41
Alignment explanation
Indices: 46624237--46624318 Score: 164
Period size: 41 Copynumber: 2.0 Consensus size: 41
46624227 TAAATGGTTG
46624237 TAATTAATTATTAAGTTAGAATTATCCAATCTAAGCAATCA
1 TAATTAATTATTAAGTTAGAATTATCCAATCTAAGCAATCA
46624278 TAATTAATTATTAAGTTAGAATTATCCAATCTAAGCAATCA
1 TAATTAATTATTAAGTTAGAATTATCCAATCTAAGCAATCA
46624319 ATCTCTCACA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 41 1.00
ACGTcount: A:0.44, C:0.12, G:0.07, T:0.37
Consensus pattern (41 bp):
TAATTAATTATTAAGTTAGAATTATCCAATCTAAGCAATCA
Found at i:46624347 original size:47 final size:47
Alignment explanation
Indices: 46624293--46624387 Score: 190
Period size: 47 Copynumber: 2.0 Consensus size: 47
46624283 AATTATTAAG
46624293 TTAGAATTATCCAATCTAAGCAATCAATCTCTCACATATCAAATTTC
1 TTAGAATTATCCAATCTAAGCAATCAATCTCTCACATATCAAATTTC
46624340 TTAGAATTATCCAATCTAAGCAATCAATCTCTCACATATCAAATTTC
1 TTAGAATTATCCAATCTAAGCAATCAATCTCTCACATATCAAATTTC
46624387 T
1 T
46624388 ATTAAAGATT
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 48 1.00
ACGTcount: A:0.38, C:0.23, G:0.04, T:0.35
Consensus pattern (47 bp):
TTAGAATTATCCAATCTAAGCAATCAATCTCTCACATATCAAATTTC
Found at i:46624935 original size:14 final size:14
Alignment explanation
Indices: 46624918--46625125 Score: 66
Period size: 14 Copynumber: 14.7 Consensus size: 14
46624908 ACTTATCCCT
* * *
46624918 TAAACCCTAAATCA
1 TAAACCATAAACCC
46624932 TAAACCATAAACCC
1 TAAACCATAAACCC
* *
46624946 TAAACCCCT-AACCT
1 TAAA-CCATAAACCC
* * *
46624960 TTAACCCTTAACCC
1 TAAACCATAAACCC
* * *
46624974 TTAACCCTTAACCC
1 TAAACCATAAACCC
* *
46624988 TTAACCCCT-AACCAC
1 -TAAACCATAAACC-C
*
46625003 TAAACCTTAAACCC
1 TAAACCATAAACCC
* * *
46625017 -CAACACTTAAACCA
1 TAAAC-CATAAACCC
* *
46625031 TAAACCATAATCCA
1 TAAACCATAAACCC
* *
46625045 TAATCCATAAACCT
1 TAAACCATAAACCC
46625059 TAAA--ATAGTAACTCC
1 TAAACCATA--AAC-CC
* **
46625074 TAAACCTTAAAATC
1 TAAACCATAAACCC
*
46625088 TAAACCATATACCC
1 TAAACCATAAACCC
*
46625102 TGAACCATAAACCC
1 TAAACCATAAACCC
* *
46625116 AAAACTATAA
1 TAAACCATAA
46625126 TGATAATTAA
Statistics
Matches: 149, Mismatches: 33, Indels: 24
0.72 0.16 0.12
Matches are distributed among these distances:
12 3 0.02
13 7 0.05
14 113 0.76
15 24 0.16
17 2 0.01
ACGTcount: A:0.44, C:0.33, G:0.01, T:0.22
Consensus pattern (14 bp):
TAAACCATAAACCC
Found at i:46624956 original size:8 final size:7
Alignment explanation
Indices: 46624888--46625016 Score: 73
Period size: 7 Copynumber: 18.1 Consensus size: 7
46624878 ACTAATTAAT
46624888 CTAAACC
1 CTAAACC
*
46624895 CTAATCC
1 CTAAACC
* *
46624902 CTTAACA
1 CTAAACC
* *
46624909 CTTATCC
1 CTAAACC
46624916 CTTAAACC
1 C-TAAACC
*
46624924 CTAAATC
1 CTAAACC
*
46624931 ATAAACC
1 CTAAACC
*
46624938 ATAAACC
1 CTAAACC
46624945 CTAAACCC
1 CTAAA-CC
46624953 CT-AACC
1 CTAAACC
* *
46624959 TTTAACC
1 CTAAACC
*
46624966 CTTAACC
1 CTAAACC
*
46624973 CTTAACC
1 CTAAACC
*
46624980 CTTAACC
1 CTAAACC
*
46624987 CTTAACCC
1 C-TAAACC
46624995 CT-AACC
1 CTAAACC
46625001 ACTAAACC
1 -CTAAACC
*
46625009 TTAAACC
1 CTAAACC
46625016 C
1 C
46625017 CAACACTTAA
Statistics
Matches: 97, Mismatches: 19, Indels: 12
0.76 0.15 0.09
Matches are distributed among these distances:
6 6 0.06
7 73 0.75
8 18 0.19
ACGTcount: A:0.36, C:0.40, G:0.00, T:0.24
Consensus pattern (7 bp):
CTAAACC
Found at i:46624958 original size:21 final size:21
Alignment explanation
Indices: 46624934--46625036 Score: 91
Period size: 21 Copynumber: 4.9 Consensus size: 21
46624924 CTAAATCATA
46624934 AACCATAAACCCTAAACCCCT
1 AACCATAAACCCTAAACCCCT
* * * *
46624955 AACCTTTAACCCTTAACCCTT
1 AACCATAAACCCTAAACCCCT
* * *
46624976 AACCCTTAACCCTTAACCCCT
1 AACCATAAACCCTAAACCCCT
*
46624997 AACCACTAAACCTTAAACCCC-
1 AACCA-TAAACCCTAAACCCCT
* *
46625018 AACACTTAAACCATAAACC
1 AAC-CATAAACCCTAAACC
46625037 ATAATCCATA
Statistics
Matches: 68, Mismatches: 12, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
21 55 0.81
22 13 0.19
ACGTcount: A:0.39, C:0.41, G:0.00, T:0.20
Consensus pattern (21 bp):
AACCATAAACCCTAAACCCCT
Found at i:46625034 original size:7 final size:7
Alignment explanation
Indices: 46625024--46625062 Score: 51
Period size: 7 Copynumber: 5.6 Consensus size: 7
46625014 CCCCAACACT
46625024 TAAACCA
1 TAAACCA
46625031 TAAACCA
1 TAAACCA
*
46625038 TAATCCA
1 TAAACCA
*
46625045 TAATCCA
1 TAAACCA
*
46625052 TAAACCT
1 TAAACCA
46625059 TAAA
1 TAAA
46625063 ATAGTAACTC
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
7 29 1.00
ACGTcount: A:0.51, C:0.26, G:0.00, T:0.23
Consensus pattern (7 bp):
TAAACCA
Found at i:46628286 original size:98 final size:97
Alignment explanation
Indices: 46628117--46628313 Score: 304
Period size: 98 Copynumber: 2.0 Consensus size: 97
46628107 CAACTATGTT
* *
46628117 TCTATATTGAGCCATAGTTGTTAATACACCTTATGCTTACTACCTAATCAACGCATAAACTTTCA
1 TCTATATCGAGCCATAGTTGTTAATACACCTTATGCTTACTACCTAATCAACGCATAAACTCTCA
*
46628182 ATACAAATTTTCATTACTTAATAGACCAAGTTC
66 ATACAAATTTTCATTACTT-AGAGACCAAGTTC
* * * * * *
46628215 TCTATATCGAGCCATAGTTGTTAATACCCCTTATGTTTACTAGCTTATCAATGCATCAACTCTCA
1 TCTATATCGAGCCATAGTTGTTAATACACCTTATGCTTACTACCTAATCAACGCATAAACTCTCA
46628280 ATACAAATTTTCATTACTTAGAGACCAAGTTC
66 ATACAAATTTTCATTACTTAGAGACCAAGTTC
46628312 TC
1 TC
46628314 ATGCTTTTAT
Statistics
Matches: 90, Mismatches: 9, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
97 14 0.16
98 76 0.84
ACGTcount: A:0.32, C:0.22, G:0.09, T:0.36
Consensus pattern (97 bp):
TCTATATCGAGCCATAGTTGTTAATACACCTTATGCTTACTACCTAATCAACGCATAAACTCTCA
ATACAAATTTTCATTACTTAGAGACCAAGTTC
Found at i:46628370 original size:3 final size:3
Alignment explanation
Indices: 46628362--46628397 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
46628352 TATCAAATCC
46628362 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
46628398 CAAATTTAGA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:46628917 original size:13 final size:13
Alignment explanation
Indices: 46628862--46628919 Score: 55
Period size: 13 Copynumber: 4.4 Consensus size: 13
46628852 CTCGAACCCA
46628862 AAACCTTGAACCAT
1 AAACCTTGAACC-T
* *
46628876 GAACC-CGAACCT
1 AAACCTTGAACCT
**
46628888 AAATTTTGAATCCT
1 AAACCTTGAA-CCT
46628902 AAACCTTGAACCT
1 AAACCTTGAACCT
46628915 AAACC
1 AAACC
46628920 CCAAACCCCA
Statistics
Matches: 34, Mismatches: 8, Indels: 5
0.72 0.17 0.11
Matches are distributed among these distances:
12 3 0.09
13 16 0.47
14 15 0.44
ACGTcount: A:0.40, C:0.29, G:0.09, T:0.22
Consensus pattern (13 bp):
AAACCTTGAACCT
Found at i:46633575 original size:17 final size:17
Alignment explanation
Indices: 46633553--46633586 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
46633543 TGTTATTAAA
*
46633553 GGTTAAAATGGTAAAAT
1 GGTTAAAATGATAAAAT
46633570 GGTTAAAATGATAAAAT
1 GGTTAAAATGATAAAAT
46633587 AATTAAAATA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.50, C:0.00, G:0.21, T:0.29
Consensus pattern (17 bp):
GGTTAAAATGATAAAAT
Found at i:46633592 original size:17 final size:17
Alignment explanation
Indices: 46633555--46633595 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
46633545 TTATTAAAGG
* **
46633555 TTAAAATGGTAAAATGG
1 TTAAAATGATAAAATAA
46633572 TTAAAATGATAAAATAA
1 TTAAAATGATAAAATAA
46633589 TTAAAAT
1 TTAAAAT
46633596 AAAGCCAAAT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.56, C:0.00, G:0.12, T:0.32
Consensus pattern (17 bp):
TTAAAATGATAAAATAA
Found at i:46635373 original size:40 final size:39
Alignment explanation
Indices: 46635289--46635513 Score: 265
Period size: 40 Copynumber: 5.6 Consensus size: 39
46635279 TTGAATGATG
* * * *
46635289 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
46635329 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
* *
46635369 TCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
*
46635408 TCCGGGTTAAGTCTCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTC-CGAAGGCATTTGTGCGAGTTACTAAA
*
46635448 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTA-AA
*
46635489 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGT-CCGAAGGCATTTG
46635514 AACGAGGAGC
Statistics
Matches: 163, Mismatches: 17, Indels: 10
0.86 0.09 0.05
Matches are distributed among these distances:
39 35 0.21
40 117 0.72
41 11 0.07
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:46643349 original size:40 final size:40
Alignment explanation
Indices: 46643265--46643489 Score: 255
Period size: 40 Copynumber: 5.7 Consensus size: 40
46643255 TTGAATGATG
* * *
46643265 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
* *
46643304 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
46643345 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
46643384 TCCGGGTTAAGTCCCGAAAGCATTTGTGCGAGTTACTAAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AAT
*
46643425 T-CGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
46643463 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
46643490 AACGAGGAGC
Statistics
Matches: 160, Mismatches: 17, Indels: 16
0.83 0.09 0.08
Matches are distributed among these distances:
38 2 0.01
39 34 0.21
40 111 0.69
41 13 0.08
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:46662077 original size:17 final size:17
Alignment explanation
Indices: 46662057--46662090 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
46662047 TGTCATTAAA
*
46662057 GGTTAAAATGGTAAAAT
1 GGTTAAAATGATAAAAT
*
46662074 GGTTTAAATGATAAAAT
1 GGTTAAAATGATAAAAT
46662091 AATTAAAATA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.47, C:0.00, G:0.21, T:0.32
Consensus pattern (17 bp):
GGTTAAAATGATAAAAT
Found at i:46662995 original size:43 final size:43
Alignment explanation
Indices: 46662947--46663029 Score: 114
Period size: 43 Copynumber: 1.9 Consensus size: 43
46662937 TTACCGAGAG
46662947 GTGATTACATGTAAGACCATGTAT-GGTACATTGGCATTGTATT
1 GTGATTACATGTAAGACCATGTATAGG-ACATTGGCATTGTATT
* * * *
46662990 GTGATTACGTGTAAGACCGTGTCTAGGACATTGGTATTGT
1 GTGATTACATGTAAGACCATGTATAGGACATTGGCATTGT
46663030 TATATGATTT
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
43 33 0.94
44 2 0.06
ACGTcount: A:0.25, C:0.12, G:0.27, T:0.36
Consensus pattern (43 bp):
GTGATTACATGTAAGACCATGTATAGGACATTGGCATTGTATT
Found at i:46676491 original size:93 final size:93
Alignment explanation
Indices: 46676332--46676502 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
46676322 GGATGGTTGA
* * *
46676332 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTCTGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
46676397 TGAGTCCGAGTTCGAGAGATGTAACTAG
66 TGAGTCCGAGTTCGAGAGATGTAACTAG
* *
46676425 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
*
46676490 TGAGTCTGAGTTC
66 TGAGTCCGAGTTC
46676503 ACTTATGGGC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGAGAGATGTAACTAG
Found at i:46676507 original size:46 final size:45
Alignment explanation
Indices: 46676336--46676510 Score: 190
Period size: 46 Copynumber: 3.8 Consensus size: 45
46676326 GGTTGAGCAT
* * *
46676336 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTCTGGATGCAAATGT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC-AACGC
*** * * * *
46676382 CCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTA-ACTAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGATGCAACGC
46676427 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC-AACGC
* *
46676475 CCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
46676511 GCGGGTTACA
Statistics
Matches: 106, Mismatches: 18, Indels: 10
0.79 0.13 0.07
Matches are distributed among these distances:
45 2 0.02
46 68 0.64
47 33 0.31
48 3 0.03
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.29
Consensus pattern (45 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAACGC
Found at i:46695949 original size:27 final size:27
Alignment explanation
Indices: 46695919--46695972 Score: 99
Period size: 27 Copynumber: 2.0 Consensus size: 27
46695909 AGACAATGCA
46695919 ATCAACCTAACACAAATTAAATTTAAG
1 ATCAACCTAACACAAATTAAATTTAAG
*
46695946 ATCAACCTAGCACAAATTAAATTTAAG
1 ATCAACCTAACACAAATTAAATTTAAG
46695973 CCATATTAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.50, C:0.19, G:0.06, T:0.26
Consensus pattern (27 bp):
ATCAACCTAACACAAATTAAATTTAAG
Found at i:46705882 original size:46 final size:46
Alignment explanation
Indices: 46705832--46706007 Score: 210
Period size: 46 Copynumber: 3.8 Consensus size: 46
46705822 TGGTTGAGCA
*
46705832 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
*** * * ** *
46705878 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTA-ACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGATGC-AAACG
* *
46705925 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
46705971 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
46706008 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 18, Indels: 6
0.82 0.14 0.05
Matches are distributed among these distances:
46 74 0.68
47 35 0.32
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:46705988 original size:93 final size:93
Alignment explanation
Indices: 46705829--46705999 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
46705819 GGATGGTTGA
***
46705829 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACACCCGAACTCGTTGAGT
46705894 TGAGTCCGAGTTCGAGAGATGTAACTAG
66 TGAGTCCGAGTTCGAGAGATGTAACTAG
* *
46705922 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACACCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACACCCGAACTCGTTGAGT
46705987 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
46706000 ACTTATGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACACCCGAACTCGTTGAGT
TGAGTCCGAGTTCGAGAGATGTAACTAG
Found at i:46708526 original size:46 final size:47
Alignment explanation
Indices: 46708391--46708613 Score: 206
Period size: 47 Copynumber: 4.7 Consensus size: 47
46708381 GATAAGGAGA
* * * * *
46708391 CGATGCCATGTCTCAGACATGGTCTTACACTGGCTCGT-AT-TCCAAGT
1 CGATGCCATGTCCCAGACAT-GTCTTACACTAGCTC-TCATCTCGAGGC
* *
46708438 CGATGCCATGTCCTAGACATGGTCTTACACT-GACTATCATCTCGAGGC
1 CGATGCCATGTCCCAGACAT-GTCTTACACTAG-CTCTCATCTCGAGGC
* * * *
46708486 CGATG-CATGTCCCAGACATGTATTACACTAGCCCTCATCTCAATGC
1 CGATGCCATGTCCCAGACATGTCTTACACTAGCTCTCATCTCGAGGC
* * * * *
46708532 CAATGCCATGTCCCAAACATGATCTTACACTGGCTCTCATAAT-GTGGC
1 CGATGCCATGTCCCAGACATG-TCTTACACTAGCTCTCAT-CTCGAGGC
46708580 CGATG-CATGTCCCAGACATGTCTTACACTAGCTC
1 CGATGCCATGTCCCAGACATGTCTTACACTAGCTC
46708614 ACATTAACCC
Statistics
Matches: 145, Mismatches: 24, Indels: 15
0.79 0.13 0.08
Matches are distributed among these distances:
46 39 0.27
47 75 0.52
48 30 0.21
49 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.27
Consensus pattern (47 bp):
CGATGCCATGTCCCAGACATGTCTTACACTAGCTCTCATCTCGAGGC
Found at i:46708558 original size:94 final size:94
Alignment explanation
Indices: 46708440--46708611 Score: 256
Period size: 94 Copynumber: 1.8 Consensus size: 94
46708430 TTCCAAGTCG
* * * *
46708440 ATGCCATGTCCTAGACATGGTCTTACACTGACTATCAT-CTCGAGGCCGATGCATGTCCCAGACA
1 ATGCCATGTCCCAAACATGATCTTACACTGACTATCATAAT-GAGGCCGATGCATGTCCCAGACA
46708504 TGTATTACACTAGCCCTCATCTCAATGCCA
65 TGTATTACACTAGCCCTCATCTCAATGCCA
* * *
46708534 ATGCCATGTCCCAAACATGATCTTACACTGGCTCTCATAATGTGGCCGATGCATGTCCCAGACAT
1 ATGCCATGTCCCAAACATGATCTTACACTGACTATCATAATGAGGCCGATGCATGTCCCAGACAT
*
46708599 GTCTTACACTAGC
66 GTATTACACTAGC
46708612 TCACATTAAC
Statistics
Matches: 69, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
94 68 0.99
95 1 0.01
ACGTcount: A:0.26, C:0.30, G:0.17, T:0.27
Consensus pattern (94 bp):
ATGCCATGTCCCAAACATGATCTTACACTGACTATCATAATGAGGCCGATGCATGTCCCAGACAT
GTATTACACTAGCCCTCATCTCAATGCCA
Found at i:46709783 original size:49 final size:49
Alignment explanation
Indices: 46709730--46709823 Score: 170
Period size: 49 Copynumber: 1.9 Consensus size: 49
46709720 TATAAACATG
*
46709730 CCATATCATCAATTTAATAATAAAATAATTTATTAAACTCTGGATTTGT
1 CCATAACATCAATTTAATAATAAAATAATTTATTAAACTCTGGATTTGT
*
46709779 CCATAACATCAGTTTAATAATAAAATAATTTATTAAACTCTGGAT
1 CCATAACATCAATTTAATAATAAAATAATTTATTAAACTCTGGAT
46709824 ATGTGGTCCC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 43 1.00
ACGTcount: A:0.43, C:0.13, G:0.06, T:0.38
Consensus pattern (49 bp):
CCATAACATCAATTTAATAATAAAATAATTTATTAAACTCTGGATTTGT
Found at i:46712705 original size:40 final size:39
Alignment explanation
Indices: 46712660--46712854 Score: 257
Period size: 40 Copynumber: 4.9 Consensus size: 39
46712650 GGATATAGCT
*
46712660 ACTCGCTCAAATGCCTTCGGGACTTAGCCCAGTTATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCC-GTTATAGTA
46712700 ACTCGCACAAATGCCTTCGGGACTTAGCCCGATTATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCG-TTATAGTA
* *
46712740 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAATA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCC-GTTATAGTA
* ** *
46712780 ACTCGCACAATTGCCTTCGGG-CTTAGCCCGGAATTAGTC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGTTA-TAGTA
* *
46712819 ACTAGCACAAATGGCTTCGGGACTTAGCCCGGTTAT
1 ACTCGCACAAATGCCTTCGGGACTTAGCCC-GTTAT
46712855 CATCCGAATA
Statistics
Matches: 137, Mismatches: 13, Indels: 10
0.86 0.08 0.06
Matches are distributed among these distances:
38 2 0.01
39 30 0.22
40 102 0.74
41 3 0.02
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (39 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGTTATAGTA
Found at i:46718385 original size:28 final size:29
Alignment explanation
Indices: 46718331--46718388 Score: 84
Period size: 28 Copynumber: 2.0 Consensus size: 29
46718321 TACAGGAGTT
46718331 TTCACACGGCCTGGCACACGCCCGTGTCC
1 TTCACACGGCCTGGCACACGCCCGTGTCC
*
46718360 TTCACACGGCCAT-G-ACACGCCTGTGTCC
1 TTCACACGGCC-TGGCACACGCCCGTGTCC
46718388 T
1 T
46718389 AGCCTGTGTG
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
28 14 0.52
29 12 0.44
30 1 0.04
ACGTcount: A:0.16, C:0.41, G:0.22, T:0.21
Consensus pattern (29 bp):
TTCACACGGCCTGGCACACGCCCGTGTCC
Found at i:46726034 original size:47 final size:47
Alignment explanation
Indices: 46725963--46726219 Score: 195
Period size: 47 Copynumber: 5.5 Consensus size: 47
46725953 GGCTAGTTCT
* *
46725963 AGACATGGTCTTACACTGGTTCATATCCCAAGCCGATGCCATGTCCT
1 AGACATGGTCTTACACTGGCTCATATCCCAAGCCGATGCCATGTCCC
* *
46726010 AGACATGGTCTTACACTGGCTCATATCCTAAGTCGATGCCATGTCCCCC
1 AGACATGGTCTTACACTGGCTCATATCCCAAGCCGATGCCATGT--CCC
* * **
46726059 AGACATGGTCTTACGCTGACT-ATCATCTCGTAGCCGATG-CATGTCCC
1 AGACATGGTCTTACACTGGCTCAT-ATC-CCAAGCCGATGCCATGTCCC
* * ** * * *
46726106 AAACAT-GTCTTACACTGGCTTACGTCTCGAGGTCGATG-CATGTCCC
1 AGACATGGTCTTACACTGGCTCATATC-CCAAGCCGATGCCATGTCCC
* * * * * * * *
46726152 AAACAT-TTCTTACACTAGAACTCGTCT-CGATGTCGATGCCATGT-CC
1 AGACATGGTCTTACACT-G-GCTCATATCCCAAGCCGATGCCATGTCCC
46726198 AGACATGGTCTTACACTGGCTC
1 AGACATGGTCTTACACTGGCTC
46726220 TCATAATGTG
Statistics
Matches: 174, Mismatches: 27, Indels: 20
0.79 0.12 0.09
Matches are distributed among these distances:
45 3 0.02
46 64 0.37
47 65 0.37
48 5 0.03
49 29 0.17
50 8 0.05
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.28
Consensus pattern (47 bp):
AGACATGGTCTTACACTGGCTCATATCCCAAGCCGATGCCATGTCCC
Found at i:46726134 original size:46 final size:45
Alignment explanation
Indices: 46725994--46726259 Score: 157
Period size: 46 Copynumber: 5.7 Consensus size: 45
46725984 CATATCCCAA
* * * * * *
46725994 GCCGATGCCATGTCCTAGACATGGTCTTACACTGGC-TCATATCCTAA
1 GCCGATG-CATGTCCCAAACAT-GTCTTACACTGGCTTCGTCT-CGAG
* * * * *
46726041 GTCGATGCCATGTCCCCCAGACATGGTCTTACGCTGACTATCATCTCGTA-
1 GCCGATG-CATGT--CCCAAACAT-GTCTTACACTGGCT-TCGTCTCG-AG
46726091 GCCGATGCATGTCCCAAACATGTCTTACACTGGCTTACGTCTCGAG
1 GCCGATGCATGTCCCAAACATGTCTTACACTGGCTT-CGTCTCGAG
* * * *
46726137 GTCGATGCATGTCCCAAACATTTCTTACACTAGAAC-TCGTCTCGAT
1 GCCGATGCATGTCCCAAACATGTCTTACACT-G-GCTTCGTCTCGAG
* * * * *
46726183 GTCGATGCCATGT-CCAGACATGGTCTTACACTGGCTCTCATAAT-GTG
1 GCCGATG-CATGTCCCAAACAT-GTCTTACACTGGCT-TCGT-CTCGAG
*
46726230 GCCGATG-ATGTCCCAGACATGTCTTACACT
1 GCCGATGCATGTCCCAAACATGTCTTACACT
46726260 AGCTCACATT
Statistics
Matches: 181, Mismatches: 23, Indels: 32
0.77 0.10 0.14
Matches are distributed among these distances:
45 17 0.09
46 78 0.43
47 46 0.25
48 2 0.01
49 25 0.14
50 7 0.04
51 6 0.03
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (45 bp):
GCCGATGCATGTCCCAAACATGTCTTACACTGGCTTCGTCTCGAG
Found at i:46730978 original size:3 final size:3
Alignment explanation
Indices: 46730970--46730995 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
46730960 TGAGGATCTC
46730970 GAA GAA GAA GAA GAA GAA GAA GAA GA
1 GAA GAA GAA GAA GAA GAA GAA GAA GA
46730996 CCTACAAAGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.65, C:0.00, G:0.35, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:46733613 original size:40 final size:41
Alignment explanation
Indices: 46733542--46733644 Score: 109
Period size: 40 Copynumber: 2.5 Consensus size: 41
46733532 CGATATCTCA
* * * * *
46733542 CACACTAAGTGTCGTACATAGCCGAAGCTATC-TCAAATCG
1 CACACTAAGTGCCATATATAGTCGAACCTATCTTCAAATCG
* **
46733582 CACACTAAGTGCCATATATAGTCGAACCTATCTTGATCTCG
1 CACACTAAGTGCCATATATAGTCGAACCTATCTTCAAATCG
* *
46733623 CACACTAAATGCCACATATAGT
1 CACACTAAGTGCCATATATAGT
46733645 TGATTTGTCA
Statistics
Matches: 52, Mismatches: 10, Indels: 1
0.83 0.16 0.02
Matches are distributed among these distances:
40 27 0.52
41 25 0.48
ACGTcount: A:0.33, C:0.27, G:0.15, T:0.25
Consensus pattern (41 bp):
CACACTAAGTGCCATATATAGTCGAACCTATCTTCAAATCG
Found at i:46738376 original size:20 final size:20
Alignment explanation
Indices: 46738351--46738388 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
46738341 GTAACATATA
46738351 TCATGAACTCAGACCACAAC
1 TCATGAACTCAGACCACAAC
* *
46738371 TCATGAGCTCAGATCACA
1 TCATGAACTCAGACCACA
46738389 TAATTCCTAG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.37, C:0.32, G:0.13, T:0.18
Consensus pattern (20 bp):
TCATGAACTCAGACCACAAC
Found at i:46758485 original size:37 final size:37
Alignment explanation
Indices: 46758435--46758513 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
46758425 TTATTACGAA
* * *
46758435 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
46758472 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
46758509 GTCTT
1 GTCTT
46758514 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:46758710 original size:47 final size:47
Alignment explanation
Indices: 46758632--46759029 Score: 661
Period size: 47 Copynumber: 8.5 Consensus size: 47
46758622 CCCTTCGGGA
* * ** * * *
46758632 CTTATCACATTTATACACTTTCACATCCATCATGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
46758679 CCTGTCACATATATACACTTTCACATTCATCACATCGTCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
46758726 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
46758773 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
46758820 CTTATCACATATATACACTTTCACATTCATCACATCAGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
46758867 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
46758914 CTTATCACATATATACACTTTCACATTTATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
46758961 CTTATCACATATATACACTTTCACATTTATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
46759008 CTTATCACATATATACACTTTC
1 CTTATCACATATATACACTTTC
46759030 TTGGCTGAAT
Statistics
Matches: 331, Mismatches: 20, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 331 1.00
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:46767192 original size:27 final size:26
Alignment explanation
Indices: 46767138--46767195 Score: 73
Period size: 27 Copynumber: 2.2 Consensus size: 26
46767128 TCATCTTTCC
*
46767138 CAAAACCAAATTTTAGAAAAACTTTT
1 CAAAACCAAATTTTAGAAAAACATTT
*
46767164 CAAAACTCTAATTTTGAGAAAAA-ATTT
1 CAAAAC-CAAATTTT-AGAAAAACATTT
46767191 CAAAA
1 CAAAA
46767196 ACCCATTCCA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
26 6 0.21
27 15 0.54
28 7 0.25
ACGTcount: A:0.52, C:0.14, G:0.05, T:0.29
Consensus pattern (26 bp):
CAAAACCAAATTTTAGAAAAACATTT
Found at i:46771281 original size:39 final size:39
Alignment explanation
Indices: 46771227--46771303 Score: 138
Period size: 39 Copynumber: 2.0 Consensus size: 39
46771217 TCAAAACATG
46771227 ATTACTCAGCTTTGGAGTCTATTTAATATCTCTTTCAAT
1 ATTACTCAGCTTTGGAGTCTATTTAATATCTCTTTCAAT
46771266 ATTACTC-GACTTTGGAGTCTATTTAATATCTCTTTCAA
1 ATTACTCAG-CTTTGGAGTCTATTTAATATCTCTTTCAA
46771304 ACCTTTTCGG
Statistics
Matches: 37, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
38 1 0.03
39 36 0.97
ACGTcount: A:0.26, C:0.18, G:0.10, T:0.45
Consensus pattern (39 bp):
ATTACTCAGCTTTGGAGTCTATTTAATATCTCTTTCAAT
Found at i:46778059 original size:30 final size:30
Alignment explanation
Indices: 46778025--46778087 Score: 108
Period size: 30 Copynumber: 2.1 Consensus size: 30
46778015 ACTTATTTTA
46778025 TTGTTAATTTTGTTATTATTTTAAAGACAT
1 TTGTTAATTTTGTTATTATTTTAAAGACAT
* *
46778055 TTGTTAATTTTGTTATTATTTTAGAGGCAT
1 TTGTTAATTTTGTTATTATTTTAAAGACAT
46778085 TTG
1 TTG
46778088 CTTGTTAAGT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.25, C:0.03, G:0.14, T:0.57
Consensus pattern (30 bp):
TTGTTAATTTTGTTATTATTTTAAAGACAT
Found at i:46780165 original size:33 final size:33
Alignment explanation
Indices: 46780128--46780195 Score: 136
Period size: 33 Copynumber: 2.1 Consensus size: 33
46780118 CTGACGGACA
46780128 TTCCAAGTTGAGCAAAACATGGAGTTTCAATGC
1 TTCCAAGTTGAGCAAAACATGGAGTTTCAATGC
46780161 TTCCAAGTTGAGCAAAACATGGAGTTTCAATGC
1 TTCCAAGTTGAGCAAAACATGGAGTTTCAATGC
46780194 TT
1 TT
46780196 TTATACGTGA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.32, C:0.18, G:0.21, T:0.29
Consensus pattern (33 bp):
TTCCAAGTTGAGCAAAACATGGAGTTTCAATGC
Found at i:46784348 original size:40 final size:40
Alignment explanation
Indices: 46784293--46784374 Score: 164
Period size: 40 Copynumber: 2.0 Consensus size: 40
46784283 ATAAACCAAT
46784293 GTCTGTTGTCTAGCCTCAATCCAGGTCAGATTTTGTCCTG
1 GTCTGTTGTCTAGCCTCAATCCAGGTCAGATTTTGTCCTG
46784333 GTCTGTTGTCTAGCCTCAATCCAGGTCAGATTTTGTCCTG
1 GTCTGTTGTCTAGCCTCAATCCAGGTCAGATTTTGTCCTG
46784373 GT
1 GT
46784375 GCTCTTTGAC
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 42 1.00
ACGTcount: A:0.15, C:0.24, G:0.23, T:0.38
Consensus pattern (40 bp):
GTCTGTTGTCTAGCCTCAATCCAGGTCAGATTTTGTCCTG
Found at i:46786492 original size:23 final size:24
Alignment explanation
Indices: 46786456--46786515 Score: 68
Period size: 24 Copynumber: 2.5 Consensus size: 24
46786446 TTATTAGGAT
*
46786456 TTTTATGATATTATTTACATTTAA-
1 TTTTA-GATTTTATTTACATTTAAC
**
46786480 TTTTAGATTTTATTTTTATTTAAC
1 TTTTAGATTTTATTTACATTTAAC
*
46786504 TTTTAGAGTTTA
1 TTTTAGATTTTA
46786516 AATAGGAACA
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
23 15 0.48
24 16 0.52
ACGTcount: A:0.28, C:0.03, G:0.07, T:0.62
Consensus pattern (24 bp):
TTTTAGATTTTATTTACATTTAAC
Found at i:46787858 original size:26 final size:27
Alignment explanation
Indices: 46787829--46787883 Score: 76
Period size: 26 Copynumber: 2.1 Consensus size: 27
46787819 CCCATAAGCA
*
46787829 AAACCTAAACCCAAAC-AACCCAAACT
1 AAACCCAAACCCAAACAAACCCAAACT
* *
46787855 AAACCCAATCCCAAACAAACCCAGACT
1 AAACCCAAACCCAAACAAACCCAAACT
46787882 AA
1 AA
46787884 GCAAATCAGC
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
26 14 0.56
27 11 0.44
ACGTcount: A:0.53, C:0.38, G:0.02, T:0.07
Consensus pattern (27 bp):
AAACCCAAACCCAAACAAACCCAAACT
Found at i:46789025 original size:15 final size:15
Alignment explanation
Indices: 46789007--46789044 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
46788997 TTAATTAATT
*
46789007 TTATTATTATTACTG
1 TTATTATTATTACTA
*
46789022 TTATTACTATTACTA
1 TTATTATTATTACTA
46789037 TTATTATT
1 TTATTATT
46789045 CTCTAAATGG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.29, C:0.08, G:0.03, T:0.61
Consensus pattern (15 bp):
TTATTATTATTACTA
Found at i:46789163 original size:3 final size:3
Alignment explanation
Indices: 46789148--46789182 Score: 52
Period size: 3 Copynumber: 11.7 Consensus size: 3
46789138 AAAAGCTTAG
* *
46789148 ATT ATT ATC ATT ATT ATT ATT TTT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
46789183 CCTTTTAATT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.31, C:0.03, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:46789375 original size:24 final size:22
Alignment explanation
Indices: 46789340--46789387 Score: 60
Period size: 24 Copynumber: 2.1 Consensus size: 22
46789330 TTCGTCTTTA
46789340 TTATTGTCATTCATATTAATGCAT
1 TTATTGTCATTC-TATT-ATGCAT
* *
46789364 TTATTGTTATTCTGTTATGCAT
1 TTATTGTCATTCTATTATGCAT
46789386 TT
1 TT
46789388 TAATGTCAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
22 8 0.36
23 3 0.14
24 11 0.50
ACGTcount: A:0.23, C:0.10, G:0.10, T:0.56
Consensus pattern (22 bp):
TTATTGTCATTCTATTATGCAT
Found at i:46791640 original size:9 final size:9
Alignment explanation
Indices: 46791624--46791662 Score: 51
Period size: 9 Copynumber: 4.3 Consensus size: 9
46791614 TTAATTAATT
*
46791624 TTATTATTA
1 TTATTACTA
* *
46791633 TTACTATTA
1 TTATTACTA
46791642 TTATTACTA
1 TTATTACTA
46791651 TTATTACTA
1 TTATTACTA
46791660 TTA
1 TTA
46791663 CTGTTATTAT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
9 27 1.00
ACGTcount: A:0.33, C:0.08, G:0.00, T:0.59
Consensus pattern (9 bp):
TTATTACTA
Found at i:46791641 original size:21 final size:21
Alignment explanation
Indices: 46791600--46791676 Score: 79
Period size: 21 Copynumber: 3.7 Consensus size: 21
46791590 CTTTTTGGTT
46791600 ATTTTATTATTAAATTA--ATTA
1 ATTTTATTATT--ATTACTATTA
46791621 ATTTTATTATTATTACTATT-
1 ATTTTATTATTATTACTATTA
*
46791641 ATTATTACTATTATTACTATTA
1 ATT-TTATTATTATTACTATTA
* *
46791663 CTGTTATTATTATT
1 ATTTTATTATTATT
46791677 CTCTAAATGG
Statistics
Matches: 48, Mismatches: 4, Indels: 8
0.80 0.07 0.13
Matches are distributed among these distances:
19 4 0.08
20 3 0.06
21 40 0.83
22 1 0.02
ACGTcount: A:0.34, C:0.05, G:0.01, T:0.60
Consensus pattern (21 bp):
ATTTTATTATTATTACTATTA
Found at i:46791642 original size:15 final size:15
Alignment explanation
Indices: 46791624--46791676 Score: 70
Period size: 15 Copynumber: 3.5 Consensus size: 15
46791614 TTAATTAATT
* *
46791624 TTATTATTATTACTA
1 TTATTATTACTATTA
46791639 TTATTATTACTATTA
1 TTATTATTACTATTA
* *
46791654 TTACTATTACTGTTA
1 TTATTATTACTATTA
46791669 TTATTATT
1 TTATTATT
46791677 CTCTAAATGG
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
15 33 1.00
ACGTcount: A:0.30, C:0.08, G:0.02, T:0.60
Consensus pattern (15 bp):
TTATTATTACTATTA
Found at i:46791674 original size:12 final size:12
Alignment explanation
Indices: 46791625--46791656 Score: 64
Period size: 12 Copynumber: 2.7 Consensus size: 12
46791615 TAATTAATTT
46791625 TATTATTATTAC
1 TATTATTATTAC
46791637 TATTATTATTAC
1 TATTATTATTAC
46791649 TATTATTA
1 TATTATTA
46791657 CTATTACTGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.34, C:0.06, G:0.00, T:0.59
Consensus pattern (12 bp):
TATTATTATTAC
Found at i:46791801 original size:3 final size:3
Alignment explanation
Indices: 46791786--46791820 Score: 52
Period size: 3 Copynumber: 11.7 Consensus size: 3
46791776 AAAAGCTTAG
* *
46791786 ATT ATT ATC ATT ATT ATT ATT CTT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
46791821 CCTTTTAATT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.31, C:0.06, G:0.00, T:0.63
Consensus pattern (3 bp):
ATT
Found at i:46792010 original size:24 final size:22
Alignment explanation
Indices: 46791977--46792024 Score: 60
Period size: 24 Copynumber: 2.1 Consensus size: 22
46791967 TTTGTCTTTA
*
46791977 TTATTTTTATTCATATTAATGCAT
1 TTATTGTTATTC-TATT-ATGCAT
*
46792001 TTATTGTTATTCTGTTATGCAT
1 TTATTGTTATTCTATTATGCAT
46792023 TT
1 TT
46792025 TAATGTCAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
22 8 0.36
23 3 0.14
24 11 0.50
ACGTcount: A:0.23, C:0.08, G:0.08, T:0.60
Consensus pattern (22 bp):
TTATTGTTATTCTATTATGCAT
Found at i:46805533 original size:44 final size:44
Alignment explanation
Indices: 46805264--46805520 Score: 239
Period size: 44 Copynumber: 5.8 Consensus size: 44
46805254 TACGAGTTAA
* * ** *
46805264 AAATTTTATCTTCCTAAAGTTGCAGTGGAATAGATTGAAGATAGC
1 AAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGCTA-C
* * * *
46805309 AAATATTATCTCTCTAAAGTTGCAGTGGAGCAGATTAAAGCTAT
1 AAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGCTAC
* * * * * * ** *
46805353 AAACCTTATCTCTCTGAAGTTGCAGTAGAGTAGGTTGAAATTAT
1 AAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGCTAC
* * * * *
46805397 GAGTCTTATCTCTCTGAAA-TTGCAGT-GAGCAGATCGAAGATAAC
1 AAATCTTATCTCCCT-AAAGTTGCAGTGGAGCAGATTGAAGCT-AC
* *
46805441 CAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTAC
1 AAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGCTAC
*
46805485 AAATCCTATCTCCCTAAAGTTGCAGTGGAGCAGATT
1 AAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATT
46805521 CAAGGGACAA
Statistics
Matches: 172, Mismatches: 36, Indels: 9
0.79 0.17 0.04
Matches are distributed among these distances:
43 12 0.07
44 109 0.63
45 51 0.30
ACGTcount: A:0.32, C:0.17, G:0.21, T:0.30
Consensus pattern (44 bp):
AAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGCTAC
Found at i:46805544 original size:132 final size:132
Alignment explanation
Indices: 46805295--46805554 Score: 290
Period size: 132 Copynumber: 2.0 Consensus size: 132
46805285 GCAGTGGAAT
* * * *
46805295 AGATTGAAGATAGCAAATATTATCTCTCTAAAGTTGCAGTGGAGCAGATTAAAGCTATAAACCTT
1 AGATCGAAGATAACAAATATTATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAGCTACAAACCTT
* * * * * ** ** * *
46805360 ATCTCTCTGAAGTTGCAGTAGAGTAGGTTGAAATTATGAGTCTTATCTCTCTGAAATTGCAGTGA
66 ATCTCCCTAAAGTTGCAGTAGAGCAGATTCAAAGGACAAATCATATCTCTCTGAAATTGCAGTGA
46805425 GC
131 GC
* * * *
46805427 AGATCGAAGATAACCAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTACAAATCC-
1 AGATCGAAGATAACAAATATTATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAGCTACAAA-CCT
* * *
46805491 TATCTCCCTAAAGTTGCAGTGGAGCAGATTCAAGGGACAAATCATATAC-CTCTGAAGTTGCAGT
65 TATCTCCCTAAAGTTGCAGTAGAGCAGATTCAAAGGACAAATCATAT-CTCTCTGAAATTGCAGT
46805555 AGGTGGGATT
Statistics
Matches: 104, Mismatches: 22, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
132 101 0.97
133 3 0.03
ACGTcount: A:0.33, C:0.18, G:0.21, T:0.28
Consensus pattern (132 bp):
AGATCGAAGATAACAAATATTATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAGCTACAAACCTT
ATCTCCCTAAAGTTGCAGTAGAGCAGATTCAAAGGACAAATCATATCTCTCTGAAATTGCAGTGA
GC
Found at i:46805546 original size:88 final size:88
Alignment explanation
Indices: 46805280--46805554 Score: 272
Period size: 88 Copynumber: 3.1 Consensus size: 88
46805270 TATCTTCCTA
* *
46805280 AAGTTGCAGTGGAATAGATTGAAGATAGCAAATATTATCTCTCTAAAGTTGCAGTGGAGCAGATT
1 AAGTTGCAGTGGAGTAGATTGAAGATA-CAAATCTTATCTCTCTAAAGTTGCAGTGGAGCAGATT
* * * *
46805345 AAAGCTATAAACCTTATCTCTCTG
65 CAAGCAACAAATCTTATCTCTCTG
* * ** *
46805369 AAGTTGCAGTAGAGTAGGTTGAA-ATTATGAGTCTTATCTCTCTGAAA-TTGCAGT-GAGCAGA-
1 AAGTTGCAGTGGAGTAGATTGAAGA-TACAAATCTTATCTCTCT-AAAGTTGCAGTGGAGCAGAT
* * *
46805430 TCGAAGATAACCAATCTTATCTCCCTG
64 TC-AAG-CAACAAATCTTATCTCTCTG
* * * *
46805457 AAGTTGCAGTGGAGCAGATTGAAGCTACAAATCCTATCTCCCTAAAGTTGCAGTGGAGCAGATTC
1 AAGTTGCAGTGGAGTAGATTGAAGATACAAATCTTATCTCTCTAAAGTTGCAGTGGAGCAGATTC
** *
46805522 AAGGGACAAATCATATAC-CTCTG
66 AAGCAACAAATCTTAT-CTCTCTG
46805545 AAGTTGCAGT
1 AAGTTGCAGT
46805555 AGGTGGGATT
Statistics
Matches: 149, Mismatches: 28, Indels: 19
0.76 0.14 0.10
Matches are distributed among these distances:
86 1 0.01
87 13 0.09
88 97 0.65
89 36 0.24
90 2 0.01
ACGTcount: A:0.33, C:0.17, G:0.22, T:0.28
Consensus pattern (88 bp):
AAGTTGCAGTGGAGTAGATTGAAGATACAAATCTTATCTCTCTAAAGTTGCAGTGGAGCAGATTC
AAGCAACAAATCTTATCTCTCTG
Found at i:46805549 original size:44 final size:44
Alignment explanation
Indices: 46805270--46805554 Score: 155
Period size: 44 Copynumber: 6.5 Consensus size: 44
46805260 TTAAAAATTT
* * ** * **
46805270 TATCTTCCTAAAGTTGCAGTGGAATAGATTGAAGATAGCAAAT-A
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTCAAGCGA-CAAATCA
* * * * * * *
46805314 TTATCTCTCTAAAGTTGCAGTGGAGCAGATTAAAGCTATAAACCT
1 -TATCTCCCTGAAGTTGCAGTGGAGCAGATTCAAGCGACAAATCA
* * * * * *** ** * *
46805359 TATCTCTCTGAAGTTGCAGTAGAGTAGGTTGAAATTATGAGTCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTCAAGCGACAAATCA
* * ** * *
46805403 TATCTCTCTGAAATTGCAGT-GAGCAGA-TCGAAGATAACCAATCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTC-AAG-CGACAAATCA
* * *
46805447 TATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTACAAATCC
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTCAAGCGACAAATCA
* *
46805491 TATCTCCCTAAAGTTGCAGTGGAGCAGATTCAAGGGACAAATCA
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTCAAGCGACAAATCA
*
46805535 TATAC-CTCTGAAGTTGCAGT
1 TAT-CTCCCTGAAGTTGCAGT
46805555 AGGTGGGATT
Statistics
Matches: 192, Mismatches: 42, Indels: 13
0.78 0.17 0.05
Matches are distributed among these distances:
42 1 0.01
43 7 0.04
44 141 0.73
45 42 0.22
46 1 0.01
ACGTcount: A:0.32, C:0.18, G:0.21, T:0.29
Consensus pattern (44 bp):
TATCTCCCTGAAGTTGCAGTGGAGCAGATTCAAGCGACAAATCA
Found at i:46807221 original size:4 final size:4
Alignment explanation
Indices: 46807204--46807241 Score: 51
Period size: 4 Copynumber: 9.8 Consensus size: 4
46807194 ATTTTAAACT
* *
46807204 TTTA TTTG TTTA TTTA TTTA TTTA TTTA GTT- TTTA TTT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTT
46807242 TTATTTTTCT
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
3 2 0.07
4 27 0.93
ACGTcount: A:0.18, C:0.00, G:0.05, T:0.76
Consensus pattern (4 bp):
TTTA
Found at i:46814455 original size:22 final size:22
Alignment explanation
Indices: 46814430--46814473 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
46814420 TTTAGTTAAT
46814430 TATGCAATATTCCAATTTTGCC
1 TATGCAATATTCCAATTTTGCC
46814452 TATGCAATATTCCAATTTTGCC
1 TATGCAATATTCCAATTTTGCC
46814474 CTTAAATAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.27, C:0.23, G:0.09, T:0.41
Consensus pattern (22 bp):
TATGCAATATTCCAATTTTGCC
Found at i:46816138 original size:18 final size:18
Alignment explanation
Indices: 46816103--46816141 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
46816093 AATAATCCCC
*
46816103 TAAAATAATAAAATAAAA
1 TAAAATAATAAAACAAAA
46816121 TAAAATAA-ATAAACAAAA
1 TAAAATAATA-AAACAAAA
46816139 TAA
1 TAA
46816142 GACCAAATAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 1 0.05
18 18 0.95
ACGTcount: A:0.77, C:0.03, G:0.00, T:0.21
Consensus pattern (18 bp):
TAAAATAATAAAACAAAA
Found at i:46828724 original size:47 final size:47
Alignment explanation
Indices: 46828672--46828887 Score: 315
Period size: 47 Copynumber: 4.6 Consensus size: 47
46828662 GATAATTGTG
* *
46828672 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
46828719 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
46828768 ATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * * *
46828815 ATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGG
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
46828862 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
46828888 TCCCGAAGGG
Statistics
Matches: 153, Mismatches: 14, Indels: 4
0.89 0.08 0.02
Matches are distributed among these distances:
47 106 0.69
49 47 0.31
ACGTcount: A:0.32, C:0.08, G:0.31, T:0.29
Consensus pattern (47 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:46828774 original size:96 final size:94
Alignment explanation
Indices: 46828672--46828887 Score: 315
Period size: 96 Copynumber: 2.3 Consensus size: 94
46828662 GATAATTGTG
* *
46828672 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATAT
* * * *
46828737 ATGTGATAAGGCCTAATGGCCGATGTGATGA
64 ATGTGACAAGGCCGAATGGCCAACGTGATGA
*
46828768 ATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
* * *
46828833 GTGACAGGGCCGAGTGGCCAACGTGATGG
66 GTGACAAGGCCGAATGGCCAACGTGATGA
*
46828862 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
46828888 TCCCGAAGGG
Statistics
Matches: 108, Mismatches: 12, Indels: 2
0.89 0.10 0.02
Matches are distributed among these distances:
94 53 0.49
96 55 0.51
ACGTcount: A:0.32, C:0.08, G:0.31, T:0.29
Consensus pattern (94 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
GTGACAAGGCCGAATGGCCAACGTGATGA
Found at i:46832870 original size:81 final size:79
Alignment explanation
Indices: 46832699--46832916 Score: 215
Period size: 81 Copynumber: 2.7 Consensus size: 79
46832689 TTAAATCAAG
* * * * * *
46832699 ATAAAATCTATTAAATAGTGGGAATATATCCCGAAACAGAATCATTTGA-TTAAGTCATTTCATT
1 ATAAAATCTGTTAAATGGCGGGAATAAATCCCGAAACAG-AT--TTT-ATTTAATTC-TAT--TT
*
46832763 TGGAAATAAAATCAAAATGAA
59 TGGAAAAAAAATCAAAATGAA
* **
46832784 ATAAAATCTGTTAATTGGCGGGAATAAATCTTGAAACAGATTTTCAATTTAATTCTATTTTGGAA
1 ATAAAATCTGTTAAATGGCGGGAATAAATCCCGAAACAGATTTT--ATTTAATTCTATTTTGGAA
* *
46832849 AAAAAATTAAAATCG-T
64 AAAAAATCAAAAT-GAA
*
46832865 ATAAAATCTGTTAAATGGCGGGGATAAATCCCGAAACAGATTTTATTTAATT
1 ATAAAATCTGTTAAATGGCGGGAATAAATCCCGAAACAGATTTTATTTAATT
46832917 TTAATTTCTA
Statistics
Matches: 113, Mismatches: 17, Indels: 12
0.80 0.12 0.08
Matches are distributed among these distances:
79 8 0.07
81 58 0.51
82 4 0.04
83 3 0.03
84 8 0.07
85 32 0.28
ACGTcount: A:0.43, C:0.10, G:0.14, T:0.33
Consensus pattern (79 bp):
ATAAAATCTGTTAAATGGCGGGAATAAATCCCGAAACAGATTTTATTTAATTCTATTTTGGAAAA
AAAATCAAAATGAA
Found at i:46833241 original size:88 final size:87
Alignment explanation
Indices: 46832761--46833242 Score: 441
Period size: 87 Copynumber: 5.6 Consensus size: 87
46832751 AGTCATTTCA
* * * **
46832761 TTTGGAAATAAAATCAAAA-TGAAATAAAATCTGTT-AATTGGCGGGAATAAATCTTGAAACAGA
1 TTTGGAAATAAAATCAAAATTGGAATAAAATCCGTTGAA-TGACGGGAATAAATCCCGAAACAGA
*
46832824 --TT-TTCAA-TTTAATTCT-AT
65 TTTTATTTAATTTTAATTCTCAT
* * * * * * * *
46832842 TTTGGAAAAAAAATTAAAA-TCGTATAAAATCTGTTAAATGGCGGGGATAAATCCCGAAACAGAT
1 TTTGGAAATAAAATCAAAATTGGAATAAAATCCGTTGAATGACGGGAATAAATCCCGAAACAGAT
46832906 TTTATTTAATTTTAATT-TCTAGT
66 TTTATTTAATTTTAATTCTC-A-T
* * * * * * *
46832929 TTTGGCAACAAAAT-AAGAATTGTAATAAAATCCATTGAACGATGGGAATAAATCCCGAAACAGG
1 TTTGGAAATAAAATCAA-AATTGGAATAAAATCCGTTGAATGACGGGAATAAATCCCGAAACAGA
* *
46832993 TTTTATTTAACTTTAATTTCTC-G
65 TTTTATTTAATTTTAA-TTCTCAT
* * * *
46833016 TTTGGAAATAAAAT-AAAAATGGAATAAAATACGTTGAATGATGGGAATAAATACCGAAACAGAT
1 TTTGGAAATAAAATCAAAATTGGAATAAAATCCGTTGAATGACGGGAATAAATCCCGAAACAGAT
* * **
46833080 TTTATTTTAATTTGAATACTTGT
66 TTTA-TTTAATTTTAATTCTCAT
* * * * * * * *
46833103 TTTGGAAA-AAAATCAAAATTAGAATAAAGTTCGTTGAAAGGCGGGAATAAATCTCTAAACAAAT
1 TTTGGAAATAAAATCAAAATTGGAATAAAATCCGTTGAATGACGGGAATAAATCCCGAAACAGAT
46833167 TTTATCTTAATTTTAATTCTCAT
66 TTTAT-TTAATTTTAATTCTCAT
* *
46833190 TTTGGAAATAAAATCAAAATTGGAATAAAATCCGTTGAATGACAGAAATAAAT
1 TTTGGAAATAAAATCAAAATTGGAATAAAATCCGTTGAATGACGGGAATAAAT
46833243 AATAACTTCC
Statistics
Matches: 324, Mismatches: 60, Indels: 27
0.79 0.15 0.07
Matches are distributed among these distances:
81 52 0.16
82 2 0.01
83 2 0.01
84 5 0.02
85 7 0.02
86 57 0.18
87 110 0.34
88 85 0.26
89 2 0.01
90 2 0.01
ACGTcount: A:0.43, C:0.09, G:0.15, T:0.33
Consensus pattern (87 bp):
TTTGGAAATAAAATCAAAATTGGAATAAAATCCGTTGAATGACGGGAATAAATCCCGAAACAGAT
TTTATTTAATTTTAATTCTCAT
Found at i:46833502 original size:22 final size:23
Alignment explanation
Indices: 46833475--46833518 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 23
46833465 TTAGTGAACA
46833475 AAATATATAAATAT-AAATAAAC
1 AAATATATAAATATAAAATAAAC
* *
46833497 AAATATTTATATATAAAATAAA
1 AAATATATAAATATAAAATAAA
46833519 ATATAAAATT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 12 0.63
23 7 0.37
ACGTcount: A:0.66, C:0.02, G:0.00, T:0.32
Consensus pattern (23 bp):
AAATATATAAATATAAAATAAAC
Found at i:46833520 original size:20 final size:21
Alignment explanation
Indices: 46833474--46833527 Score: 58
Period size: 22 Copynumber: 2.6 Consensus size: 21
46833464 TTTAGTGAAC
46833474 AAAATATATAAATATAAATAA
1 AAAATATATAAATATAAATAA
* * *
46833495 ACAAATATTTATATATAAA-AT
1 A-AAATATATAAATATAAATAA
46833516 AAAATATA-AAAT
1 AAAATATATAAAT
46833528 TGAATAATTT
Statistics
Matches: 27, Mismatches: 5, Indels: 4
0.75 0.14 0.11
Matches are distributed among these distances:
19 3 0.11
20 6 0.22
21 3 0.11
22 15 0.56
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (21 bp):
AAAATATATAAATATAAATAA
Found at i:46835068 original size:17 final size:17
Alignment explanation
Indices: 46835046--46835079 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
46835036 CAAAATTTGA
46835046 TTAAAAAGCT-TTAAAAC
1 TTAAAAA-CTCTTAAAAC
46835063 TTAAAAACTCTTAAAAC
1 TTAAAAACTCTTAAAAC
46835080 ACTCGATTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 2 0.12
17 14 0.88
ACGTcount: A:0.53, C:0.15, G:0.03, T:0.29
Consensus pattern (17 bp):
TTAAAAACTCTTAAAAC
Done.