Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100714657
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 3970000 characters in sequence are not A, C, G, or T
File 150 of 318
Found at i:46837019 original size:14 final size:14
Alignment explanation
Indices: 46837000--46837028 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
46836990 TGTACAACTG
46837000 TATGTATGACTTTT
1 TATGTATGACTTTT
46837014 TATGTATGACTTTT
1 TATGTATGACTTTT
46837028 T
1 T
46837029 GTGGGGATTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.21, C:0.07, G:0.14, T:0.59
Consensus pattern (14 bp):
TATGTATGACTTTT
Found at i:46843664 original size:34 final size:34
Alignment explanation
Indices: 46843621--46843731 Score: 125
Period size: 34 Copynumber: 3.3 Consensus size: 34
46843611 AAATGTATAT
* *
46843621 ATATATATTCACCTTCGGTTATGTCAAACCTTAC
1 ATATATATTCACCTTCGATTATGACAAACCTTAC
* * *
46843655 ATATATATTCACTTTCGATTAT-ACCAAGCTATAC
1 ATATATATTCACCTTCGATTATGACAAACCT-TAC
* * * *
46843689 ATATATAATCACCTTCGATTATGCCAAGCCATAC
1 ATATATATTCACCTTCGATTATGACAAACCTTAC
46843723 ATATATATT
1 ATATATATT
46843732 TATGTACTTC
Statistics
Matches: 62, Mismatches: 13, Indels: 4
0.78 0.16 0.05
Matches are distributed among these distances:
33 5 0.08
34 54 0.87
35 3 0.05
ACGTcount: A:0.34, C:0.22, G:0.07, T:0.37
Consensus pattern (34 bp):
ATATATATTCACCTTCGATTATGACAAACCTTAC
Found at i:46850789 original size:34 final size:34
Alignment explanation
Indices: 46850750--46850860 Score: 159
Period size: 34 Copynumber: 3.3 Consensus size: 34
46850740 ATAAATGTAT
* * *
46850750 ATATATATTCACCTTCGGTTATATCAAACCATAC
1 ATATATATTCACCTTCGATTATACCAAGCCATAC
* *
46850784 ATATATATTCACTTTCGATTATACCAAGCTATAC
1 ATATATATTCACCTTCGATTATACCAAGCCATAC
* *
46850818 ATATATAATCACCTTCGATTATGCCAAGCCATAC
1 ATATATATTCACCTTCGATTATACCAAGCCATAC
46850852 ATATATATT
1 ATATATATT
46850861 TATGTACTTC
Statistics
Matches: 67, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
34 67 1.00
ACGTcount: A:0.36, C:0.22, G:0.06, T:0.36
Consensus pattern (34 bp):
ATATATATTCACCTTCGATTATACCAAGCCATAC
Found at i:46852129 original size:30 final size:30
Alignment explanation
Indices: 46852094--46852154 Score: 122
Period size: 30 Copynumber: 2.0 Consensus size: 30
46852084 TTGTGGGAGA
46852094 ACACAAGAACGAAATCCTTATAGTAAATCT
1 ACACAAGAACGAAATCCTTATAGTAAATCT
46852124 ACACAAGAACGAAATCCTTATAGTAAATCT
1 ACACAAGAACGAAATCCTTATAGTAAATCT
46852154 A
1 A
46852155 AGGGTAGATT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.48, C:0.20, G:0.10, T:0.23
Consensus pattern (30 bp):
ACACAAGAACGAAATCCTTATAGTAAATCT
Found at i:46853452 original size:41 final size:42
Alignment explanation
Indices: 46853368--46853452 Score: 120
Period size: 42 Copynumber: 2.0 Consensus size: 42
46853358 TCTAGTAGGT
* *
46853368 TTAGTGCCGGTGAATTGAATCAGGCCATTGAGCCTAGCAGTC
1 TTAGTGCCGGTGAATTGAATCAAGCCATTGAGCCTAGAAGTC
*
46853410 TTAGTGCCGGTGGAA-TGAATCAAG-CTTTGAGCCTAGAAGTC
1 TTAGTGCCGGT-GAATTGAATCAAGCCATTGAGCCTAGAAGTC
46853451 TT
1 TT
46853453 CGTGTCGATG
Statistics
Matches: 39, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
41 17 0.44
42 19 0.49
43 3 0.08
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (42 bp):
TTAGTGCCGGTGAATTGAATCAAGCCATTGAGCCTAGAAGTC
Found at i:46853475 original size:41 final size:41
Alignment explanation
Indices: 46853368--46853482 Score: 108
Period size: 41 Copynumber: 2.8 Consensus size: 41
46853358 TCTAGTAGGT
* * * *
46853368 TTAGTGCCGGT-GAATTGAATCAGGCCATTGAGCCTAGCAGTC
1 TTAGTGCCGATGGAA-TGAATCAAG-CTTTGAGCCTAGAAGTC
*
46853410 TTAGTGCCGGTGGAATGAATCAAGCTTTGAGCCTAGAAGTC
1 TTAGTGCCGATGGAATGAATCAAGCTTTGAGCCTAGAAGTC
* * * *
46853451 TTCGTGTCGATGGATTGTAA-CAAGCTTCGAGC
1 TTAGTGCCGATGGAATG-AATCAAGCTTTGAGC
46853483 TTAGCAAGCT
Statistics
Matches: 63, Mismatches: 8, Indels: 5
0.83 0.11 0.07
Matches are distributed among these distances:
41 39 0.62
42 21 0.33
43 3 0.05
ACGTcount: A:0.24, C:0.19, G:0.29, T:0.28
Consensus pattern (41 bp):
TTAGTGCCGATGGAATGAATCAAGCTTTGAGCCTAGAAGTC
Found at i:46853552 original size:16 final size:16
Alignment explanation
Indices: 46853531--46853561 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
46853521 TTGTATGGAA
46853531 AATGTGAAAACTAAAC
1 AATGTGAAAACTAAAC
46853547 AATGTGAAAACTAAA
1 AATGTGAAAACTAAA
46853562 TAAATATTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.58, C:0.10, G:0.13, T:0.19
Consensus pattern (16 bp):
AATGTGAAAACTAAAC
Found at i:46858491 original size:12 final size:12
Alignment explanation
Indices: 46858474--46858500 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
46858464 ATTCCGAAGT
46858474 ATATATATATAC
1 ATATATATATAC
46858486 ATATATATATAC
1 ATATATATATAC
46858498 ATA
1 ATA
46858501 AGTATGCCAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.52, C:0.07, G:0.00, T:0.41
Consensus pattern (12 bp):
ATATATATATAC
Found at i:46859013 original size:27 final size:27
Alignment explanation
Indices: 46858982--46859138 Score: 190
Period size: 27 Copynumber: 5.8 Consensus size: 27
46858972 TAAATTGTAC
46858982 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
46859009 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
46859035 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
46859063 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
46859091 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
46859118 AGCACTAAGTGTGCGAGTTGA
1 AGCACTAAGTGTGCGATTTGA
46859139 TTANNNNNNN
Statistics
Matches: 111, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
27 88 0.79
28 23 0.21
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:46859096 original size:82 final size:81
Alignment explanation
Indices: 46858983--46859138 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
46858973 AAATTGTACA
* *
46858983 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
46859047 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
46859064 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
46859129 TGCGAGTTGA
65 TGCGAATTGA
46859139 TTANNNNNNN
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:46859123 original size:55 final size:54
Alignment explanation
Indices: 46858982--46859136 Score: 195
Period size: 55 Copynumber: 2.9 Consensus size: 54
46858972 TAAATTGTAC
* **
46858982 AGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGA-AATGAATATG
1 AGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAGTTTGAATATG
* * ** *
46859035 ATGCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGTTTGACTATG
1 A-GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAGTTTGAATATG
* *
46859090 TAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTGTGCGAGTT
1 -AGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAGTT
46859137 GATTANNNNN
Statistics
Matches: 86, Mismatches: 13, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
53 1 0.01
54 38 0.44
55 46 0.53
56 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (54 bp):
AGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAGTTTGAATATG
Found at i:46876311 original size:40 final size:40
Alignment explanation
Indices: 46876267--46876362 Score: 115
Period size: 40 Copynumber: 2.4 Consensus size: 40
46876257 ACTGTGTTCG
46876267 GCACTAAGTGTGCGATTTGAAATAACTTCGACTATA-AATA
1 GCACTAAGTGTGCGATTTGAAATAACTTCGACTATATAA-A
* * * * *
46876307 GCACTAAGTGTGCAGA-TTGGAATAGCTTTGGCTATATAAG
1 GCACTAAGTGTGC-GATTTGAAATAACTTCGACTATATAAA
46876347 GCACTAAGTGTGCGAT
1 GCACTAAGTGTGCGAT
46876363 ACCGAGATAG
Statistics
Matches: 48, Mismatches: 5, Indels: 6
0.81 0.08 0.10
Matches are distributed among these distances:
39 2 0.04
40 42 0.88
41 4 0.08
ACGTcount: A:0.32, C:0.15, G:0.24, T:0.29
Consensus pattern (40 bp):
GCACTAAGTGTGCGATTTGAAATAACTTCGACTATATAAA
Found at i:46877741 original size:15 final size:16
Alignment explanation
Indices: 46877707--46877743 Score: 53
Period size: 14 Copynumber: 2.5 Consensus size: 16
46877697 GAAGGGACTT
46877707 TGTATGA-ATGTTTGA
1 TGTATGATATGTTTGA
46877722 T-TATGATATG-TTGA
1 TGTATGATATGTTTGA
46877736 TGTATGAT
1 TGTATGAT
46877744 TTTTATTTGT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
14 10 0.50
15 10 0.50
ACGTcount: A:0.27, C:0.00, G:0.24, T:0.49
Consensus pattern (16 bp):
TGTATGATATGTTTGA
Found at i:46881274 original size:38 final size:38
Alignment explanation
Indices: 46881223--46881297 Score: 123
Period size: 38 Copynumber: 2.0 Consensus size: 38
46881213 GTATTCAGGT
* *
46881223 TAAATCCCGCAGGCTTCGTGCTGGTATTATATCCGGGA
1 TAAATCCCGCAGGCCTAGTGCTGGTATTATATCCGGGA
*
46881261 TAAATCCCGCAGGCCTAGTGCTGGTATTATATTCGGG
1 TAAATCCCGCAGGCCTAGTGCTGGTATTATATCCGGG
46881298 CCTTCGTGCC
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
38 34 1.00
ACGTcount: A:0.21, C:0.23, G:0.27, T:0.29
Consensus pattern (38 bp):
TAAATCCCGCAGGCCTAGTGCTGGTATTATATCCGGGA
Found at i:46881350 original size:43 final size:42
Alignment explanation
Indices: 46881290--46881414 Score: 169
Period size: 43 Copynumber: 2.9 Consensus size: 42
46881280 GCTGGTATTA
*
46881290 TATTCGGGCCTTCGTGCCTAGCAGGCTTAGTGCCGGTGATGTG
1 TATTCAGGCCTTCGTGCCTAGCAGGCTTA-TGCCGGTGATGTG
* * *
46881333 TATTTAGGCCTTCGTGCCTAGCAAGCTTCATGCCGATGATGTG
1 TATTCAGGCCTTCGTGCCTAGCAGGCTT-ATGCCGGTGATGTG
* *
46881376 TATTCGGGCCTTCGTGCCTAGCAGGCATAATGCCGGTGA
1 TATTCAGGCCTTCGTGCCTAGCAGGC-TTATGCCGGTGA
46881415 AATGATATGT
Statistics
Matches: 71, Mismatches: 9, Indels: 4
0.85 0.11 0.05
Matches are distributed among these distances:
43 69 0.97
44 2 0.03
ACGTcount: A:0.16, C:0.24, G:0.30, T:0.30
Consensus pattern (42 bp):
TATTCAGGCCTTCGTGCCTAGCAGGCTTATGCCGGTGATGTG
Found at i:46881805 original size:45 final size:43
Alignment explanation
Indices: 46881731--46881857 Score: 127
Period size: 45 Copynumber: 2.9 Consensus size: 43
46881721 TTGACTTGAT
* * **
46881731 TATTTGGGCCTTTGAGCTTAGCAAACTATAATGCCGGTGAGATAC
1 TATTCGGGCC-TTGAGCCTAGCAGGCTATAATGCCGGTGAGA-AC
46881776 TATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGT--GAAC
1 TATTCGGGCCTT-GAGCCTAGCAGGCTATAATGCCGGTGAGAAC
*
46881818 TGATATCGGGCCTTGAGCCT-GACAGGCGA-AATGCCGGTGA
1 T-AT-TCGGGCCTTGAGCCTAG-CAGGCTATAATGCCGGTGA
46881858 TTTGAGAAAA
Statistics
Matches: 71, Mismatches: 5, Indels: 13
0.80 0.06 0.15
Matches are distributed among these distances:
42 13 0.18
43 16 0.23
44 11 0.15
45 31 0.44
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.25
Consensus pattern (43 bp):
TATTCGGGCCTTGAGCCTAGCAGGCTATAATGCCGGTGAGAAC
Found at i:46887722 original size:47 final size:47
Alignment explanation
Indices: 46887662--46888102 Score: 720
Period size: 47 Copynumber: 9.6 Consensus size: 47
46887652 TATTTGAATA
*
46887662 AATGTG-AAGTGTATATATGTGATAAGGCCTAAAGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * *
46887708 ATTGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
46887755 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
46887802 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
46887849 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
46887896 AATGTGAAAGTGTATATATGTGATAAGG-CGAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
46887942 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGG-CGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
46887988 AATGTGAAAGTGTATATATGTGATAAGG-CTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * *
46888034 -ATGTG-AAGTG--TATATGTGATAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
46888077 GATGTGAAAGTGTATA-ATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
46888103 TCCCGAAGGG
Statistics
Matches: 372, Mismatches: 15, Indels: 16
0.92 0.04 0.04
Matches are distributed among these distances:
42 13 0.03
43 14 0.04
44 10 0.03
45 17 0.05
46 107 0.29
47 211 0.57
ACGTcount: A:0.32, C:0.08, G:0.31, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:46894506 original size:19 final size:19
Alignment explanation
Indices: 46894464--46894506 Score: 77
Period size: 19 Copynumber: 2.3 Consensus size: 19
46894454 CACATATACA
*
46894464 TTCAACTAGTTCATATAAC
1 TTCATCTAGTTCATATAAC
46894483 TTCATCTAGTTCATATAAC
1 TTCATCTAGTTCATATAAC
46894502 TTCAT
1 TTCAT
46894507 ATTACCACAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.33, C:0.21, G:0.05, T:0.42
Consensus pattern (19 bp):
TTCATCTAGTTCATATAAC
Found at i:46894739 original size:43 final size:43
Alignment explanation
Indices: 46894686--46894788 Score: 122
Period size: 41 Copynumber: 2.4 Consensus size: 43
46894676 GCCATATCCT
* *
46894686 AGATATGGTCTTACATGTTA-TCATATAACGATGCCACTGTCCC
1 AGATATGGTCTTACATGTTAGTCATAT-ACGATGCCAATGTCAC
* * *
46894729 AGATAGGGTCTTATACG--AGTCATATACGATGCCAATGTCAC
1 AGATATGGTCTTACATGTTAGTCATATACGATGCCAATGTCAC
*
46894770 AGACATGGTCTTACATGTT
1 AGATATGGTCTTACATGTT
46894789 TTATCACTTC
Statistics
Matches: 48, Mismatches: 9, Indels: 6
0.76 0.14 0.10
Matches are distributed among these distances:
41 28 0.58
42 6 0.12
43 14 0.29
ACGTcount: A:0.29, C:0.20, G:0.19, T:0.31
Consensus pattern (43 bp):
AGATATGGTCTTACATGTTAGTCATATACGATGCCAATGTCAC
Found at i:46901480 original size:41 final size:42
Alignment explanation
Indices: 46901412--46901490 Score: 97
Period size: 41 Copynumber: 1.9 Consensus size: 42
46901402 TTACATGTTA
* * *
46901412 TCATATATCAATGCCACTTTCCGAGACAGGGTCTTACACGAG
1 TCATATATCAATGCCAATGTCCGAGACAGGGTATTACACGAG
* * *
46901454 TCATATA-CAATGCTAATGTCCTAGACATGGTATTACA
1 TCATATATCAATGCCAATGTCCGAGACAGGGTATTACA
46901491 TGAATTCACA
Statistics
Matches: 31, Mismatches: 6, Indels: 1
0.82 0.16 0.03
Matches are distributed among these distances:
41 24 0.77
42 7 0.23
ACGTcount: A:0.32, C:0.23, G:0.16, T:0.29
Consensus pattern (42 bp):
TCATATATCAATGCCAATGTCCGAGACAGGGTATTACACGAG
Found at i:46913210 original size:43 final size:42
Alignment explanation
Indices: 46913163--46913318 Score: 172
Period size: 43 Copynumber: 3.7 Consensus size: 42
46913153 TATCCCAAAT
* * *
46913163 ATGGTCTTACATGTTATCTCATATCGATGCCAATAGCCCAG-C
1 ATGGTCTTACACGTAATCACATATCGATGCCAAT-GCCCAGAC
* *
46913205 TATGGTCTTACACGAAATCACATAACGATGCCAATGTCCCAGAC
1 -ATGGTCTTACACGTAATCACATATCGATGCCAATG-CCCAGAC
* * *
46913249 ATGGTTTTACACGTAATCACA-ATAGAATGCCAATGTCCAGAC
1 ATGGTCTTACACGTAATCACATATCG-ATGCCAATGCCCAGAC
* *
46913291 ATGGTCTTACATGTAATCACATCTCGAT
1 ATGGTCTTACACGTAATCACATATCGAT
46913319 AATCCTAATG
Statistics
Matches: 95, Mismatches: 14, Indels: 9
0.81 0.12 0.08
Matches are distributed among these distances:
42 30 0.32
43 64 0.67
44 1 0.01
ACGTcount: A:0.31, C:0.24, G:0.16, T:0.28
Consensus pattern (42 bp):
ATGGTCTTACACGTAATCACATATCGATGCCAATGCCCAGAC
Found at i:46917630 original size:32 final size:32
Alignment explanation
Indices: 46917594--46917725 Score: 99
Period size: 32 Copynumber: 4.1 Consensus size: 32
46917584 TAAAATAAGG
* *
46917594 TTTTATGTTCCTTAAAAATTAGAAAAAAAAAA
1 TTTTAGGTCCCTTAAAAATTAGAAAAAAAAAA
* *
46917626 TTTTAGGTCCCTTAAAAATTGGTAAAAAAAAA
1 TTTTAGGTCCCTTAAAAATTAGAAAAAAAAAA
* * * *
46917658 -TTTA-GACCCTTAAAAGCTAAAAAAAGAAAAAA
1 TTTTAGGTCCCTTAAAA-ATTAGAAAA-AAAAAA
** * * *
46917690 TTTGGGGGTCCCTTAAAAACT-GAAAAACAATA
1 TTT-TAGGTCCCTTAAAAATTAGAAAAAAAAAA
46917722 TTTT
1 TTTT
46917726 GAACTCTTTT
Statistics
Matches: 75, Mismatches: 20, Indels: 11
0.71 0.19 0.10
Matches are distributed among these distances:
30 10 0.13
31 8 0.11
32 41 0.55
33 6 0.08
35 10 0.13
ACGTcount: A:0.48, C:0.11, G:0.11, T:0.30
Consensus pattern (32 bp):
TTTTAGGTCCCTTAAAAATTAGAAAAAAAAAA
Found at i:46918122 original size:19 final size:19
Alignment explanation
Indices: 46918100--46918164 Score: 62
Period size: 19 Copynumber: 3.4 Consensus size: 19
46918090 AGTTAAAATT
*
46918100 TTATAAAATACTAAAAAAA
1 TTATAAAATACTATAAAAA
*
46918119 TTATATAA-ACTTATAAAAA
1 TTATAAAATAC-TATAAAAA
* *
46918138 TCAT-AAATATGTATAAAAA
1 TTATAAAATA-CTATAAAAA
46918157 TTATAAAA
1 TTATAAAA
46918165 CATCCTAAAT
Statistics
Matches: 36, Mismatches: 6, Indels: 7
0.73 0.12 0.14
Matches are distributed among these distances:
18 4 0.11
19 29 0.81
20 3 0.08
ACGTcount: A:0.62, C:0.05, G:0.02, T:0.32
Consensus pattern (19 bp):
TTATAAAATACTATAAAAA
Found at i:46918152 original size:29 final size:28
Alignment explanation
Indices: 46918118--46918247 Score: 97
Period size: 28 Copynumber: 4.6 Consensus size: 28
46918108 TACTAAAAAA
*
46918118 ATTATATAAACTTATAAAA-ATCATAAAT
1 ATTATA-AAAATTATAAAACATCATAAAT
*
46918146 ATGTATAAAAATTATAAAACATCCTAAAT
1 AT-TATAAAAATTATAAAACATCATAAAT
* * *
46918175 ATTATAAAAA-AATAAAA-TTTATAAAT
1 ATTATAAAAATTATAAAACATCATAAAT
* * * *
46918201 -TTATAAAACGAATAGAAAAAATCATAAAA
1 ATTATAAAA--ATTATAAAACATCATAAAT
46918230 ACTTATAATAAATTATAA
1 A-TTATAA-AAATTATAA
46918248 TGAATTATAA
Statistics
Matches: 80, Mismatches: 13, Indels: 16
0.73 0.12 0.15
Matches are distributed among these distances:
25 8 0.10
26 6 0.08
27 7 0.09
28 26 0.32
29 20 0.25
30 5 0.06
31 6 0.08
32 2 0.03
ACGTcount: A:0.60, C:0.06, G:0.02, T:0.32
Consensus pattern (28 bp):
ATTATAAAAATTATAAAACATCATAAAT
Found at i:46918180 original size:28 final size:27
Alignment explanation
Indices: 46918118--46918247 Score: 102
Period size: 29 Copynumber: 4.6 Consensus size: 27
46918108 TACTAAAAAA
*
46918118 ATTATATAAACTTATAAAAATCATAAAT
1 ATTATA-AAAATTATAAAAATCATAAAT
*
46918146 ATGTATAAAAATTATAAAACATCCTAAAT
1 AT-TATAAAAATTATAAAA-ATCATAAAT
* * *
46918175 ATTATAAAAA-AATAAAATTTATAAAT
1 ATTATAAAAATTATAAAAATCATAAAT
* * *
46918201 -TTATAAAACGAATAGAAAAAATCATAAAA
1 ATTATAAAA--ATTA-TAAAAATCATAAAT
46918230 ACTTATAATAAATTATAA
1 A-TTATAA-AAATTATAA
46918248 TGAATTATAA
Statistics
Matches: 80, Mismatches: 13, Indels: 17
0.73 0.12 0.15
Matches are distributed among these distances:
25 8 0.10
26 6 0.08
27 7 0.09
28 22 0.28
29 26 0.32
30 3 0.04
31 6 0.08
32 2 0.03
ACGTcount: A:0.60, C:0.06, G:0.02, T:0.32
Consensus pattern (27 bp):
ATTATAAAAATTATAAAAATCATAAAT
Found at i:46918237 original size:10 final size:10
Alignment explanation
Indices: 46918219--46918268 Score: 57
Period size: 10 Copynumber: 5.0 Consensus size: 10
46918209 CGAATAGAAA
*
46918219 AAATCATAA-
1 AAATTATAAT
46918228 AAACTTATAAT
1 AAA-TTATAAT
46918239 AAATTATAAT
1 AAATTATAAT
* *
46918249 GAATTATAAA
1 AAATTATAAT
46918259 AAATTATAAT
1 AAATTATAAT
46918269 TTTTAAAAAA
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
9 3 0.09
10 28 0.82
11 3 0.09
ACGTcount: A:0.60, C:0.04, G:0.02, T:0.34
Consensus pattern (10 bp):
AAATTATAAT
Found at i:46918247 original size:20 final size:20
Alignment explanation
Indices: 46918216--46918268 Score: 63
Period size: 20 Copynumber: 2.6 Consensus size: 20
46918206 AAACGAATAG
*
46918216 AAAAAATCATAA-AAACTTAT
1 AAAAAATTATAATAAA-TTAT
* *
46918236 AATAAATTATAATGAATTAT
1 AAAAAATTATAATAAATTAT
46918256 AAAAAATTATAAT
1 AAAAAATTATAAT
46918269 TTTTAAAAAA
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
20 26 0.93
21 2 0.07
ACGTcount: A:0.62, C:0.04, G:0.02, T:0.32
Consensus pattern (20 bp):
AAAAAATTATAATAAATTAT
Found at i:46918721 original size:29 final size:27
Alignment explanation
Indices: 46918621--46918845 Score: 122
Period size: 29 Copynumber: 8.0 Consensus size: 27
46918611 TAAAAATGAC
* *
46918621 ATTTTTAT-AGTTTTATAATTTTTTAT
1 ATTTTTATAATTTTTATAAGTTTTTAT
* *
46918647 AATTTATTAGAATTTATTAT-AGCTTTTTGT
1 -ATTT-TTATAATTT-TTATAAG-TTTTTAT
* * *
46918677 ACTTTTATAGTATTTATAAGTTTTTAT
1 ATTTTTATAATTTTTATAAGTTTTTAT
*
46918704 GATTTTATATAATTTTTATAAGTTCATT-T
1 -ATTTT-TATAATTTTTATAAGTT-TTTAT
* *
46918733 -TTTTTAAAATATTTT-TAATATTTTTATT
1 ATTTTTATAAT-TTTTATAA-GTTTTTA-T
*
46918761 ATTTTCATAATTTATTATAA-TTTATTAT
1 ATTTTTATAATTT-TTATAAGTTT-TTAT
*
46918789 AAGTTTTTATAATATTTATAAG-TTTTAT
1 -A-TTTTTATAATTTTTATAAGTTTTTAT
* * * *
46918817 ATTGGTTATAACTTTTATAACTTTATAT
1 ATT-TTTATAATTTTTATAAGTTTTTAT
46918845 A
1 A
46918846 AGTTTTTAAT
Statistics
Matches: 152, Mismatches: 25, Indels: 41
0.70 0.11 0.19
Matches are distributed among these distances:
26 12 0.08
27 38 0.25
28 32 0.21
29 45 0.30
30 25 0.16
ACGTcount: A:0.32, C:0.03, G:0.05, T:0.60
Consensus pattern (27 bp):
ATTTTTATAATTTTTATAAGTTTTTAT
Found at i:46918724 original size:9 final size:9
Alignment explanation
Indices: 46918621--46918853 Score: 116
Period size: 10 Copynumber: 24.8 Consensus size: 9
46918611 TAAAAATGAC
46918621 ATTTTTAT-
1 ATTTTTATA
*
46918629 AGTTTTATA
1 ATTTTTATA
46918638 ATTTTTTATA
1 A-TTTTTATA
*
46918648 ATTTATTAGA
1 ATTT-TTATA
46918658 ATTTATTATA
1 ATTT-TTATA
* *
46918668 GCTTTTTGT-
1 -ATTTTTATA
*
46918677 ACTTTTATA
1 ATTTTTATA
* *
46918686 GTATTTATA
1 ATTTTTATA
*
46918695 AGTTTTTATG
1 A-TTTTTATA
46918705 ATTTTATATA
1 ATTTT-TATA
46918715 ATTTTTATA
1 ATTTTTATA
* * *
46918724 A-GTTCATT
1 ATTTTTATA
* *
46918732 TTTTTTAAA
1 ATTTTTATA
46918741 ATATTTT-TAA
1 AT-TTTTAT-A
*
46918751 TATTTTTATT
1 -ATTTTTATA
*
46918761 ATTTTCATA
1 ATTTTTATA
46918770 ATTTATTATA
1 ATTT-TTATA
46918780 ATTTATTATA
1 ATTT-TTATA
46918790 AGTTTTTATA
1 A-TTTTTATA
*
46918800 ATATTTATA
1 ATTTTTATA
*
46918809 AGTTTTAT-
1 ATTTTTATA
*
46918817 ATTGGTTATA
1 ATT-TTTATA
*
46918827 ACTTTTATA
1 ATTTTTATA
*
46918836 ACTTTATATA
1 A-TTTTTATA
46918846 AGTTTTTA
1 A-TTTTTA
46918854 ATATGAACAT
Statistics
Matches: 167, Mismatches: 41, Indels: 32
0.70 0.17 0.13
Matches are distributed among these distances:
8 18 0.11
9 57 0.34
10 83 0.50
11 9 0.05
ACGTcount: A:0.32, C:0.03, G:0.06, T:0.60
Consensus pattern (9 bp):
ATTTTTATA
Found at i:46918817 original size:18 final size:18
Alignment explanation
Indices: 46918775--46918857 Score: 71
Period size: 18 Copynumber: 4.5 Consensus size: 18
46918765 TCATAATTTA
*
46918775 TTATAATTTATTATAAGTTT
1 TTATAATAT-TTATAAG-TT
46918795 TTATAATATTTATAAGTT
1 TTATAATATTTATAAGTT
* ** *
46918813 TTATATTGGTTATAACTT
1 TTATAATATTTATAAGTT
46918831 TTATAACT-TTATATAAGTT
1 TTATAA-TATT-TATAAGTT
46918850 TT-TAATAT
1 TTATAATAT
46918858 GAACATTAAA
Statistics
Matches: 52, Mismatches: 8, Indels: 8
0.76 0.12 0.12
Matches are distributed among these distances:
17 1 0.02
18 26 0.50
19 17 0.33
20 8 0.15
ACGTcount: A:0.35, C:0.02, G:0.06, T:0.57
Consensus pattern (18 bp):
TTATAATATTTATAAGTT
Found at i:46918846 original size:122 final size:122
Alignment explanation
Indices: 46918621--46918849 Score: 272
Period size: 122 Copynumber: 1.9 Consensus size: 122
46918611 TAAAAATGAC
* * *
46918621 ATTTTTATAGTTTTATAATTTTTTATAATTTATTAGAATTTATTATAGCTTTTTGTACTTTTATA
1 ATTTTTATAGTTTTATAATTTTTCATAATTTATTAGAATTTATTATAGCTTTTTATAATTTTATA
* * *
46918686 GTATTTATAAGTTTTTATGATTTTATATAATTTTTATAAGTTCATTTTTTTTAAAAT
66 GTATTTATAAGTTGTTATAATTTTATATAATTTATATAAGTTCATTTTTTTTAAAAT
* * *
46918743 ATTTTTAATATTTTTATTA-TTTTCATAATTTATTATAATTTATTATAAG-TTTTTATAATATTT
1 ATTTTT-ATAGTTTTATAATTTTTCATAATTTATTAGAATTTATTAT-AGCTTTTTATAAT-TTT
*
46918806 ATAAGT-TTTAT-A-TTGGTTATAACTTTTATA-ACTTTATATAAGTT
63 AT-AGTATTTATAAGTT-GTTATAA-TTTTATATAATTTATATAAGTT
46918850 TTTAATATGA
Statistics
Matches: 91, Mismatches: 10, Indels: 12
0.81 0.09 0.11
Matches are distributed among these distances:
121 2 0.02
122 57 0.63
123 29 0.32
124 3 0.03
ACGTcount: A:0.32, C:0.03, G:0.06, T:0.60
Consensus pattern (122 bp):
ATTTTTATAGTTTTATAATTTTTCATAATTTATTAGAATTTATTATAGCTTTTTATAATTTTATA
GTATTTATAAGTTGTTATAATTTTATATAATTTATATAAGTTCATTTTTTTTAAAAT
Found at i:46919091 original size:26 final size:25
Alignment explanation
Indices: 46919033--46919091 Score: 66
Period size: 26 Copynumber: 2.3 Consensus size: 25
46919023 TATAAGTTTT
*
46919033 TTTTATTTTATATATCTTTTATAAG
1 TTTTATTTTAAATATCTTTTATAAG
*
46919058 TTTATATTTTAAAATAT-TTTTAATATG
1 TTT-TATTTT-AAATATCTTTT-ATAAG
46919085 TTTTATT
1 TTTTATT
46919092 ATTTTTATAA
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
25 3 0.10
26 14 0.48
27 12 0.41
ACGTcount: A:0.31, C:0.02, G:0.03, T:0.64
Consensus pattern (25 bp):
TTTTATTTTAAATATCTTTTATAAG
Found at i:46919129 original size:10 final size:9
Alignment explanation
Indices: 46919002--46919199 Score: 113
Period size: 9 Copynumber: 21.4 Consensus size: 9
46918992 TATTAGAGCT
46919002 TTTTTAT-A
1 TTTTTATAA
*
46919010 CTTTTATAA
1 TTTTTATAA
*
46919019 TATTTATAA
1 TTTTTATAA
* *
46919028 GTTTTTTTTA
1 -TTTTTATAA
46919038 -TTTTATATA
1 TTTTTATA-A
46919047 TCTTTTATAA
1 T-TTTTATAA
*
46919057 -GTTTAT-A
1 TTTTTATAA
* *
46919064 TTTTAAAATA
1 TTTTTATA-A
46919074 TTTTTA-ATA
1 TTTTTATA-A
*
46919083 TGTTTTATTA
1 T-TTTTATAA
46919093 TTTTTATAA
1 TTTTTATAA
*
46919102 TTTATTAGAA
1 TTT-TTATAA
46919112 TTTATTATAAA
1 TTT-TTAT-AA
46919123 TTTTTATAA
1 TTTTTATAA
*
46919132 TATTTATAA
1 TTTTTATAA
*
46919141 GTTTTAT-A
1 TTTTTATAA
46919149 TTTTTATAAA
1 TTTTTAT-AA
*
46919159 TTTATATAA
1 TTTTTATAA
46919168 GTTTTTA-ATA
1 -TTTTTATA-A
*
46919178 TTTTTATGA
1 TTTTTATAA
*
46919187 TTTTTATGA
1 TTTTTATAA
46919196 TTTT
1 TTTT
46919200 ATTAGAAAAT
Statistics
Matches: 149, Mismatches: 24, Indels: 33
0.72 0.12 0.16
Matches are distributed among these distances:
7 1 0.01
8 26 0.17
9 61 0.41
10 49 0.33
11 12 0.08
ACGTcount: A:0.32, C:0.01, G:0.04, T:0.63
Consensus pattern (9 bp):
TTTTTATAA
Found at i:46919200 original size:46 final size:47
Alignment explanation
Indices: 46919073--46919206 Score: 139
Period size: 46 Copynumber: 2.8 Consensus size: 47
46919063 ATTTTAAAAT
* *
46919073 ATTTTTAATATGTTTTATTATTTTTATAATTTATTAGAATTTATTATAA
1 ATTTTTAATAT-TTTTATAATTTTTATATTTTA-TAGAATTTATTATAA
* *
46919122 ATTTTT-ATAATATTTATAAGTTTTATATTTTTATA-AATTTA-TATAA
1 ATTTTTAAT-ATTTTTATAATTTTTATA-TTTTATAGAATTTATTATAA
* *
46919168 GTTTTTAATATTTTTATGATTTTTATGATTTTATTAGAA
1 ATTTTTAATATTTTTATAATTTTTAT-ATTTTA-TAGAA
46919207 AATAAAATAT
Statistics
Matches: 71, Mismatches: 8, Indels: 13
0.77 0.09 0.14
Matches are distributed among these distances:
46 29 0.41
47 11 0.15
48 19 0.27
49 12 0.17
ACGTcount: A:0.34, C:0.00, G:0.05, T:0.60
Consensus pattern (47 bp):
ATTTTTAATATTTTTATAATTTTTATATTTTATAGAATTTATTATAA
Found at i:46919308 original size:58 final size:58
Alignment explanation
Indices: 46919239--46919355 Score: 234
Period size: 58 Copynumber: 2.0 Consensus size: 58
46919229 TGCTACATGT
46919239 CACCATCTTATTAGTGTATGAGTTGGTTTTAACTATTAACATGATCAAATATGAAGAC
1 CACCATCTTATTAGTGTATGAGTTGGTTTTAACTATTAACATGATCAAATATGAAGAC
46919297 CACCATCTTATTAGTGTATGAGTTGGTTTTAACTATTAACATGATCAAATATGAAGAC
1 CACCATCTTATTAGTGTATGAGTTGGTTTTAACTATTAACATGATCAAATATGAAGAC
46919355 C
1 C
46919356 GTTGAAGAGG
Statistics
Matches: 59, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
58 59 1.00
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.36
Consensus pattern (58 bp):
CACCATCTTATTAGTGTATGAGTTGGTTTTAACTATTAACATGATCAAATATGAAGAC
Found at i:46919682 original size:15 final size:15
Alignment explanation
Indices: 46919662--46919706 Score: 54
Period size: 15 Copynumber: 2.9 Consensus size: 15
46919652 TTGTTTCAAA
**
46919662 ATATTTTATCTTTTT
1 ATATTTTATAATTTT
46919677 ATATTTTATAATTTT
1 ATATTTTATAATTTT
*
46919692 ATAATTTATATATTT
1 ATATTTTATA-ATTT
46919707 CTCAAAATAA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
15 22 0.85
16 4 0.15
ACGTcount: A:0.31, C:0.02, G:0.00, T:0.67
Consensus pattern (15 bp):
ATATTTTATAATTTT
Found at i:46930487 original size:26 final size:26
Alignment explanation
Indices: 46930458--46930513 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
46930448 CGCATTATTA
46930458 TTCATTCAGCCACTAAACTCTTCGAT
1 TTCATTCAGCCACTAAACTCTTCGAT
* *
46930484 TTCATTCAGCCACTGAACTCTTTGAT
1 TTCATTCAGCCACTAAACTCTTCGAT
46930510 TTCA
1 TTCA
46930514 CACTTTTGAG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.25, C:0.29, G:0.09, T:0.38
Consensus pattern (26 bp):
TTCATTCAGCCACTAAACTCTTCGAT
Found at i:46934766 original size:20 final size:19
Alignment explanation
Indices: 46934739--46934780 Score: 59
Period size: 20 Copynumber: 2.2 Consensus size: 19
46934729 CTTTCCAAAT
46934739 TTTCTTACTTT-CATTTGCA
1 TTTCTTACTTTCCA-TTGCA
46934758 TTTCATTACTTTCCATTGCA
1 TTTC-TTACTTTCCATTGCA
46934778 TTT
1 TTT
46934781 ACTTTCTTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 4 0.19
20 15 0.71
21 2 0.10
ACGTcount: A:0.17, C:0.21, G:0.05, T:0.57
Consensus pattern (19 bp):
TTTCTTACTTTCCATTGCA
Found at i:46937075 original size:27 final size:27
Alignment explanation
Indices: 46937045--46937150 Score: 126
Period size: 27 Copynumber: 3.9 Consensus size: 27
46937035 GGCTGCTAGA
* *
46937045 ACAGATAATGTGACAGAGTCACCAGAT
1 ACAGATAATGTGGCAGAGCCACCAGAT
*
46937072 ACAGATAATCGTGGCAGAACCACCAGA-
1 ACAGATAAT-GTGGCAGAGCCACCAGAT
*
46937099 ACAGATATATGTGGCAAAGCCACCAGAT
1 ACAGATA-ATGTGGCAGAGCCACCAGAT
*
46937127 -CAGATAATTGTGGCATAGCCACCA
1 ACAGATAA-TGTGGCAGAGCCACCA
46937151 AGACGCTTCC
Statistics
Matches: 69, Mismatches: 6, Indels: 8
0.83 0.07 0.10
Matches are distributed among these distances:
26 1 0.01
27 52 0.75
28 16 0.23
ACGTcount: A:0.39, C:0.23, G:0.22, T:0.17
Consensus pattern (27 bp):
ACAGATAATGTGGCAGAGCCACCAGAT
Found at i:46937131 original size:54 final size:54
Alignment explanation
Indices: 46937042--46937150 Score: 148
Period size: 54 Copynumber: 2.0 Consensus size: 54
46937032 CATGGCTGCT
* *
46937042 AGAACAGATAATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGAACCACC
1 AGAACAGATAATGTGACAAAGCCACCAGATACAGATAATCGTGGCAGAACCACC
* * * *
46937096 AGAACAGATATATGTGGCAAAGCCACCAGAT-CAGATAATTGTGGCATAGCCACC
1 AGAACAGATA-ATGTGACAAAGCCACCAGATACAGATAATCGTGGCAGAACCACC
46937150 A
1 A
46937151 AGACGCTTCC
Statistics
Matches: 48, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
54 31 0.65
55 17 0.35
ACGTcount: A:0.39, C:0.22, G:0.22, T:0.17
Consensus pattern (54 bp):
AGAACAGATAATGTGACAAAGCCACCAGATACAGATAATCGTGGCAGAACCACC
Found at i:46938595 original size:24 final size:24
Alignment explanation
Indices: 46938568--46938618 Score: 75
Period size: 24 Copynumber: 2.1 Consensus size: 24
46938558 CTAGATTTCC
** *
46938568 TCCCTTATCTTCTTCTAAATCCTA
1 TCCCTTATCAACTCCTAAATCCTA
46938592 TCCCTTATCAACTCCTAAATCCTA
1 TCCCTTATCAACTCCTAAATCCTA
46938616 TCC
1 TCC
46938619 TGACAGACTT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.24, C:0.37, G:0.00, T:0.39
Consensus pattern (24 bp):
TCCCTTATCAACTCCTAAATCCTA
Found at i:46940472 original size:30 final size:30
Alignment explanation
Indices: 46940436--46940502 Score: 125
Period size: 30 Copynumber: 2.2 Consensus size: 30
46940426 TGTCTAGCCT
46940436 GTGTGCCCTTCGAAGTGGCCACACATGCCC
1 GTGTGCCCTTCGAAGTGGCCACACATGCCC
46940466 GTGTGCCCTTCGAAGTGGCCACACATGCCC
1 GTGTGCCCTTCGAAGTGGCCACACATGCCC
*
46940496 TTGTGCC
1 GTGTGCC
46940503 AGGCAATGTA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 36 1.00
ACGTcount: A:0.15, C:0.36, G:0.27, T:0.22
Consensus pattern (30 bp):
GTGTGCCCTTCGAAGTGGCCACACATGCCC
Found at i:46946193 original size:190 final size:189
Alignment explanation
Indices: 46945788--46946201 Score: 542
Period size: 189 Copynumber: 2.2 Consensus size: 189
46945778 CTTGCTAATA
* ** * * * *
46945788 TAAGATCACAACCTAAGTTCATTCAATTTAACATCATGAACAACCTTTTCTGATTTAGTTGATTC
1 TAAGATCGCAACCTAAGTTCATTTGATTTAACATCATAAACAACCTTCTCTGAGTTAATTGATTC
** *
46945853 AACATCGTTGCTCCAAACGGCTCGTTGATTTAAGATTACAACCTAAGCTCATCAATTTAACATCA
66 AACATCACTGCTCCAAACGGCTCGTTGATTTAAGATCACAACCTAAGCTCATCAATTTAACATCA
* * ** *
46945918 TCAACAATTTTCTCTGAGTTAGTTGATTTAACATTGCTGGTCCAAATGGCTTAATGATT
131 TCAACAATTTTCTCTAAGTTAGCTGATTTAACATCACTGGTCCAAATGGCTCAATGATT
* *
46945977 TAAGATCGCAGCCTAAGCTT-ATTTGATTTAACATCATAAACAATCTTCTCTGAGTTAATTGATT
1 TAAGATCGCAACCTAAG-TTCATTTGATTTAACATCATAAACAACCTTCTCTGAGTTAATTGATT
* * * * * *
46946041 TAACATCACTGCTCCAAACGGCTCTTTGATTTAAGATCGCAACCTAAGTTCATTCGATTTAACTT
65 CAACATCACTGCTCCAAACGGCTCGTTGATTTAAGATCACAACCTAAGCTCA-TCAATTTAACAT
* * * **
46946106 CATGAACAATTTTCTCTAAGTTAGCTGATTTAACATCATTGTTCCAAATGGCTCGCTGATT
129 CATCAACAATTTTCTCTAAGTTAGCTGATTTAACATCACTGGTCCAAATGGCTCAATGATT
*
46946167 TAATATCGCAACCTAAGTTCATTTGATTTAACATC
1 TAAGATCGCAACCTAAGTTCATTTGATTTAACATC
46946202 TTGAATAACT
Statistics
Matches: 192, Mismatches: 30, Indels: 5
0.85 0.13 0.02
Matches are distributed among these distances:
189 99 0.52
190 93 0.48
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.36
Consensus pattern (189 bp):
TAAGATCGCAACCTAAGTTCATTTGATTTAACATCATAAACAACCTTCTCTGAGTTAATTGATTC
AACATCACTGCTCCAAACGGCTCGTTGATTTAAGATCACAACCTAAGCTCATCAATTTAACATCA
TCAACAATTTTCTCTAAGTTAGCTGATTTAACATCACTGGTCCAAATGGCTCAATGATT
Found at i:46946215 original size:95 final size:95
Alignment explanation
Indices: 46945788--46946231 Score: 482
Period size: 95 Copynumber: 4.7 Consensus size: 95
46945778 CTTGCTAATA
* * *
46945788 TAAGATCACAACCTAAGTTCATTCAATTTAACATCATGAACAACCTTT-TCTGATTTAGTTGATT
1 TAAGATCGCAACCTAAGTTCATTCGATTTAACATCATGAACAA-CTTTCTCTGAGTTAGTTGATT
* **
46945852 CAACATCGTTGCTCCAAACGGCTCGTTGATT
65 TAACATCACTGCTCCAAACGGCTCGTTGATT
** * * * *
46945883 TAAGATTACAACCTAAGCTCA-TCAATTTAACATCATCAACAATTTTCTCTGAGTTAGTTGATTT
1 TAAGATCGCAACCTAAGTTCATTCGATTTAACATCATGAACAACTTTCTCTGAGTTAGTTGATTT
** * * ***
46945947 AACATTGCTGGTCCAAATGGCTTAATGATT
66 AACATCACTGCTCCAAACGGCTCGTTGATT
* * * *
46945977 TAAGATCGCAGCCTAAGCTT-ATTTGATTTAACATCATAAACAA-TCTTCTCTGAGTTAATTGAT
1 TAAGATCGCAACCTAAG-TTCATTCGATTTAACATCATGAACAACT-TTCTCTGAGTTAGTTGAT
*
46946040 TTAACATCACTGCTCCAAACGGCTCTTTGATT
64 TTAACATCACTGCTCCAAACGGCTCGTTGATT
* * * *
46946072 TAAGATCGCAACCTAAGTTCATTCGATTTAACTTCATGAACAATTTTCTCTAAGTTAGCTGATTT
1 TAAGATCGCAACCTAAGTTCATTCGATTTAACATCATGAACAACTTTCTCTGAGTTAGTTGATTT
* * * *
46946137 AACATCATTGTTCCAAATGGCTCGCTGATT
66 AACATCACTGCTCCAAACGGCTCGTTGATT
* * * * * **
46946167 TAATATCGCAACCTAAGTTCATTTGATTTAACATCTTGAATAACTTTCTTTGAAATAGTTGATTT
1 TAAGATCGCAACCTAAGTTCATTCGATTTAACATCATGAACAACTTTCTCTGAGTTAGTTGATTT
46946232 GCTATCACTA
Statistics
Matches: 292, Mismatches: 51, Indels: 12
0.82 0.14 0.03
Matches are distributed among these distances:
93 3 0.01
94 76 0.26
95 212 0.73
96 1 0.00
ACGTcount: A:0.31, C:0.19, G:0.13, T:0.37
Consensus pattern (95 bp):
TAAGATCGCAACCTAAGTTCATTCGATTTAACATCATGAACAACTTTCTCTGAGTTAGTTGATTT
AACATCACTGCTCCAAACGGCTCGTTGATT
Found at i:46946231 original size:190 final size:189
Alignment explanation
Indices: 46945788--46946231 Score: 543
Period size: 190 Copynumber: 2.3 Consensus size: 189
46945778 CTTGCTAATA
* ** *
46945788 TAAGATCACAACCTAAGTTCATTCAATTTAACATCATGAACAACCTTT-TCTGATTTAGTTGATT
1 TAAGATCGCAACCTAAGTTCATTTGATTTAACATCATGAACAA-CTTTCTCTGAATTAGTTGATT
* ** *
46945852 CAACATCGTTGCTCCAAACGGCTCGTTGATTTAAGATTACAACCTAAGCTCATCAATTTAACATC
65 TAACATCACTGCTCCAAACGGCTCGTTGATTTAAGATCACAACCTAAGCTCATCAATTTAACATC
* * ** *
46945917 ATCAACAATTTTCTCTGAGTTAGTTGATTTAACATTGCTGGTCCAAATGGCTTAATGATT
130 ATCAACAATTTTCTCTAAGTTAGCTGATTTAACATCACTGGTCCAAATGGCTCAATGATT
* * * *
46945977 TAAGATCGCAGCCTAAGCTT-ATTTGATTTAACATCATAAACAA-TCTTCTCTGAGTTAATTGAT
1 TAAGATCGCAACCTAAG-TTCATTTGATTTAACATCATGAACAACT-TTCTCTGAATTAGTTGAT
* * * * *
46946040 TTAACATCACTGCTCCAAACGGCTCTTTGATTTAAGATCGCAACCTAAGTTCATTCGATTTAACT
64 TTAACATCACTGCTCCAAACGGCTCGTTGATTTAAGATCACAACCTAAGCTCA-TCAATTTAACA
* * * **
46946105 TCATGAACAATTTTCTCTAAGTTAGCTGATTTAACATCATTGTTCCAAATGGCTCGCTGATT
128 TCATCAACAATTTTCTCTAAGTTAGCTGATTTAACATCACTGGTCCAAATGGCTCAATGATT
* * * * *
46946167 TAATATCGCAACCTAAGTTCATTTGATTTAACATCTTGAATAACTTTCTTTGAAATAGTTGATTT
1 TAAGATCGCAACCTAAGTTCATTTGATTTAACATCATGAACAACTTTCTCTGAATTAGTTGATTT
46946232 GCTATCACTA
Statistics
Matches: 214, Mismatches: 35, Indels: 11
0.82 0.13 0.04
Matches are distributed among these distances:
187 1 0.00
188 2 0.01
189 96 0.45
190 114 0.53
191 1 0.00
ACGTcount: A:0.31, C:0.19, G:0.13, T:0.37
Consensus pattern (189 bp):
TAAGATCGCAACCTAAGTTCATTTGATTTAACATCATGAACAACTTTCTCTGAATTAGTTGATTT
AACATCACTGCTCCAAACGGCTCGTTGATTTAAGATCACAACCTAAGCTCATCAATTTAACATCA
TCAACAATTTTCTCTAAGTTAGCTGATTTAACATCACTGGTCCAAATGGCTCAATGATT
Found at i:46952784 original size:14 final size:14
Alignment explanation
Indices: 46952765--46952802 Score: 58
Period size: 14 Copynumber: 2.7 Consensus size: 14
46952755 CCAGAAAAGT
46952765 AAATCATTTTCCAG
1 AAATCATTTTCCAG
*
46952779 AAATCATTTTCCGG
1 AAATCATTTTCCAG
*
46952793 AAAACATTTT
1 AAATCATTTT
46952803 ACTGCCAAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.37, C:0.18, G:0.08, T:0.37
Consensus pattern (14 bp):
AAATCATTTTCCAG
Found at i:46954875 original size:40 final size:40
Alignment explanation
Indices: 46954791--46955015 Score: 289
Period size: 40 Copynumber: 5.7 Consensus size: 40
46954781 TTGAATGATG
* * * *
46954791 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
46954831 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
46954871 TCCGGGCTAAG-CCCGAAGGCA-TTGTTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTG-TGCGAGTTACTAAA
*
46954910 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
46954950 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
46954991 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
46955016 AACGAGGAGC
Statistics
Matches: 165, Mismatches: 13, Indels: 14
0.86 0.07 0.07
Matches are distributed among these distances:
38 3 0.02
39 31 0.19
40 118 0.72
41 13 0.08
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:46955004 original size:80 final size:80
Alignment explanation
Indices: 46954791--46955015 Score: 289
Period size: 79 Copynumber: 2.8 Consensus size: 80
46954781 TTGAATGATG
* * * * *
46954791 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAACCGGGCTAAG-TCCCGAAGGCAT
*
46954854 TTGTGCGAGATACTAAT
64 TTGTGCGAGATACTAAA
*
46954871 TCCGGGCTAAG-CCCGAAGGCA-TTGTTGCGAGTTACTA-AATCCGGGTTAAGTCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTG-TGCGAGTTACTATAA-CCGGGCTAAGTCCCGAAGGCAT
*
46954933 TTGTGCGAGTTACTAAA
64 TTGTGCGAGATACTAAA
* *
46954950 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTT
46955015 G
66 G
46955016 AACGAGGAGC
Statistics
Matches: 127, Mismatches: 11, Indels: 14
0.84 0.07 0.09
Matches are distributed among these distances:
78 2 0.02
79 61 0.48
80 59 0.46
81 5 0.04
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTT
GTGCGAGATACTAAA
Found at i:46955038 original size:119 final size:119
Alignment explanation
Indices: 46954791--46955013 Score: 290
Period size: 119 Copynumber: 1.9 Consensus size: 119
46954781 TTGAATGATG
* *
46954791 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
* *
46954856 GTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGTTGCGAGTTACTAAA
66 GTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGTTGCGAGTGACTAAA
* * * **
46954910 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAT
* *
46954973 TTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATT
64 TTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATT
46955014 TGAACGAGGA
Statistics
Matches: 90, Mismatches: 10, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
118 3 0.03
119 68 0.76
120 19 0.21
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (119 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGTTGCGAGTGACTAAA
Found at i:46961660 original size:28 final size:28
Alignment explanation
Indices: 46961597--46961778 Score: 303
Period size: 28 Copynumber: 6.5 Consensus size: 28
46961587 ATATTAAGTC
* *
46961597 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTACATAATCAAACT
*
46961624 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
46961652 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
*
46961680 CGCACACTTAGTGCTACATAATCAAATT
1 CGCACACTTAGTGCTACATAATCAAACT
*
46961708 CGCACACTTAGTGCTACATAATCAAGCT
1 CGCACACTTAGTGCTACATAATCAAACT
*
46961736 CGCACACTTAGTGCTACATAATCAAGCT
1 CGCACACTTAGTGCTACATAATCAAACT
46961764 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
46961779 GTACAATTTA
Statistics
Matches: 149, Mismatches: 5, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
27 22 0.15
28 127 0.85
ACGTcount: A:0.33, C:0.28, G:0.13, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTACATAATCAAACT
Found at i:46966380 original size:40 final size:40
Alignment explanation
Indices: 46966292--46966512 Score: 203
Period size: 40 Copynumber: 5.7 Consensus size: 40
46966282 TTGAATGATG
* * *
46966292 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAA
* *
46966332 TCCAGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAA
* **
46966372 TCCGGACTAAGAT-TTGAAGGCATTTGTGCG-GAT-CT--A
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAA
* *
46966408 T-CGGGCTTAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAA
*
46966447 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTA-AA
*
46966488 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
46966513 AACGAGGAGC
Statistics
Matches: 152, Mismatches: 18, Indels: 22
0.79 0.09 0.11
Matches are distributed among these distances:
34 1 0.01
35 22 0.14
36 4 0.03
37 2 0.01
38 2 0.01
39 5 0.03
40 103 0.68
41 12 0.08
42 1 0.01
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAA
Found at i:46966435 original size:75 final size:78
Alignment explanation
Indices: 46966345--46966512 Score: 211
Period size: 75 Copynumber: 2.2 Consensus size: 78
46966335 AGACTAAGAT
** *
46966345 CCGAAGGCATTTGTGCGAGATACTAAATCCGGACTAAGAT-TTGAAGGCATTTGTGCGGA-T-CT
1 CCGAAGGCATTTGTGCGAGATACTAAATCCGGACTAAG-TCCCGAAGGCATTTGTGCGAATTACT
46966407 AT-CGGGCT-TAGTC
65 ATACGGGCTAT-GTC
* **
46966420 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTA
1 CCGAAGGCATTTGTGCGAGATACTAAATCCGGACTAAGTCCCGAAGGCATTTGTGCGAATTACTA
46966485 TAACCGGGCTATGTC
66 T-A-CGGGCTATGTC
46966500 CCGAAGGCATTTG
1 CCGAAGGCATTTG
46966513 AACGAGGAGC
Statistics
Matches: 80, Mismatches: 6, Indels: 9
0.84 0.06 0.09
Matches are distributed among these distances:
74 1 0.01
75 51 0.64
76 1 0.01
77 4 0.05
80 22 0.28
81 1 0.01
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.27
Consensus pattern (78 bp):
CCGAAGGCATTTGTGCGAGATACTAAATCCGGACTAAGTCCCGAAGGCATTTGTGCGAATTACTA
TACGGGCTATGTC
Found at i:46966530 original size:80 final size:74
Alignment explanation
Indices: 46966387--46966545 Score: 169
Period size: 80 Copynumber: 2.1 Consensus size: 74
46966377 ACTAAGATTT
* ** *
46966387 GAAGGCATTTGTGCGGATCTATCGGGCTTAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGG
1 GAAGGCATTTGTGCGAATCTATCGGGCTTAGTCCCGAAGGCATTTGAACGAGTGACTAAATCC-G
*
46966452 GTTAAGTCCC
65 GTTAAATCCC
46966462 GAAGGCATTTGTGCGAATTACTATAACCGGGC-TATGTCCCGAAGGCATTTGAACGAG-GAGCTA
1 GAAGGCATTTGTGCGAA-T-CTAT---CGGGCTTA-GTCCCGAAGGCATTTGAACGAGTGA-CTA
* *
46966525 TATCCGGTTAAATTCC
59 AATCCGGTTAAATCCC
46966541 GAAGG
1 GAAGG
46966546 TACGTGATTT
Statistics
Matches: 70, Mismatches: 7, Indels: 10
0.80 0.08 0.11
Matches are distributed among these distances:
75 16 0.23
76 1 0.01
77 4 0.06
79 17 0.24
80 32 0.46
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.26
Consensus pattern (74 bp):
GAAGGCATTTGTGCGAATCTATCGGGCTTAGTCCCGAAGGCATTTGAACGAGTGACTAAATCCGG
TTAAATCCC
Found at i:46974722 original size:40 final size:39
Alignment explanation
Indices: 46974638--46974822 Score: 203
Period size: 40 Copynumber: 4.6 Consensus size: 39
46974628 TTGAATGATG
* * * *
46974638 TCCGGGCTAAGTCCCGAAGGC-TTTGTACGAAGTGACCATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCG-AGTTACTAAA
* * *
46974678 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
* *
46974718 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTATTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
*
46974757 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTA-AA
*
46974798 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGT-CCGAAGGCATTTG
46974823 AACGAGGAGC
Statistics
Matches: 124, Mismatches: 17, Indels: 8
0.83 0.11 0.05
Matches are distributed among these distances:
39 34 0.27
40 80 0.65
41 10 0.08
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:46974844 original size:79 final size:78
Alignment explanation
Indices: 46974639--46974854 Score: 233
Period size: 79 Copynumber: 2.7 Consensus size: 78
46974629 TGAATGATGT
* *
46974639 CCGGGCTAAGTCCCGAAGGC-TTTGTACGAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTACG-AGTGACTATATCCGG-TTAAG-TCCGAAGGCATTT
*
46974703 GTGCGAGATACTAATT
63 GTGCGAGATACTAATA
* * * *
46974719 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTACGAGTGACTATATCC-GGTTAAGT-CCGAAGGCATTTG
*
46974783 TGCGAGTTACT-ATAA
64 TGCGAGATACTAAT-A
* * *
46974798 CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATATCCGGTTAAATTCCGAAG
1 CCGGGCTAAGTCCCGAAGGCATTTGTACGAGTGA-CTATATCCGGTT-AAGTCCGAAG
46974855 ATACGTGATT
Statistics
Matches: 114, Mismatches: 15, Indels: 15
0.79 0.10 0.10
Matches are distributed among these distances:
78 3 0.03
79 65 0.57
80 46 0.40
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (78 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTACGAGTGACTATATCCGGTTAAGTCCGAAGGCATTTGTG
CGAGATACTAATA
Found at i:46981526 original size:31 final size:31
Alignment explanation
Indices: 46981474--46981551 Score: 84
Period size: 31 Copynumber: 2.5 Consensus size: 31
46981464 GGCCGTGAGG
* * * *
46981474 GCCACATGGGCGTATGAGCCCACACGAGCAA
1 GCCACATGGGCATGTGGGCCCACACAAGCAA
* * *
46981505 GCCATATGGGCATGTGGGCCCACCCAAGCAG
1 GCCACATGGGCATGTGGGCCCACACAAGCAA
*
46981536 GCCACATGGGCGTGTG
1 GCCACATGGGCATGTG
46981552 AGCTCATTTT
Statistics
Matches: 38, Mismatches: 9, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
31 38 1.00
ACGTcount: A:0.23, C:0.31, G:0.33, T:0.13
Consensus pattern (31 bp):
GCCACATGGGCATGTGGGCCCACACAAGCAA
Found at i:46982642 original size:55 final size:55
Alignment explanation
Indices: 46982536--46982656 Score: 147
Period size: 55 Copynumber: 2.2 Consensus size: 55
46982526 AGCCTATGTG
** *
46982536 CAACACTGACTTTAAAACACGGCCATGGCACACGCCTGTGTGTCCTGCCCGTGTA
1 CAACACTGACTTTAAAACACGGCCATGGCACACGCCCATGTGTCCTACCCGTGTA
* *
46982591 CAACACTGA-TTTAAAGACATGGCCGTGGCACACGCCCATGTCG-CCTACCCGTGTA
1 CAACACTGACTTTAAA-ACACGGCCATGGCACACGCCCATGT-GTCCTACCCGTGTA
* *
46982646 CAGCAATGACT
1 CAACACTGACT
46982657 CAAAAATTTT
Statistics
Matches: 56, Mismatches: 7, Indels: 5
0.82 0.10 0.07
Matches are distributed among these distances:
54 6 0.11
55 48 0.86
56 2 0.04
ACGTcount: A:0.26, C:0.32, G:0.21, T:0.21
Consensus pattern (55 bp):
CAACACTGACTTTAAAACACGGCCATGGCACACGCCCATGTGTCCTACCCGTGTA
Found at i:46983997 original size:21 final size:21
Alignment explanation
Indices: 46983946--46983988 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
46983936 AGCTTAATAG
46983946 TAAGTGATTCCGAGCTCCGTT
1 TAAGTGATTCCGAGCTCCGTT
*
46983967 TAAGTGATTCCGAGTTCCGTT
1 TAAGTGATTCCGAGCTCCGTT
46983988 T
1 T
46983989 TTAATATTCT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.19, C:0.21, G:0.23, T:0.37
Consensus pattern (21 bp):
TAAGTGATTCCGAGCTCCGTT
Found at i:46984852 original size:51 final size:49
Alignment explanation
Indices: 46984722--46984916 Score: 264
Period size: 49 Copynumber: 3.9 Consensus size: 49
46984712 TCTATTGTGA
* * * *
46984722 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAATT
* *
46984771 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAA-TT
* * * *
46984821 CGATCACGTGTGTAGTACTAAGTGCAGGCTACTAAGTGTACCAGATAATT
1 -GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAATT
* *
46984871 GGTCGCATGTGTAGTACTAAGTGTAGGCTACTATGCGTACCAGATA
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
46984917 GCTTTGGCTA
Statistics
Matches: 127, Mismatches: 17, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
49 82 0.65
50 4 0.03
51 41 0.32
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.28
Consensus pattern (49 bp):
GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAATT
Found at i:46984899 original size:100 final size:100
Alignment explanation
Indices: 46984724--46984916 Score: 350
Period size: 100 Copynumber: 1.9 Consensus size: 100
46984714 TATTGTGAGG
* *
46984724 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTAAGTGTACCAGATAATTGGTCGCATGTGTAGTACT
*
46984789 AAGTGCAGGCTACTATGCGTACCCGATAACTTCGA
66 AAGTGCAGGCTACTATGCGTACCAGATAACTTCGA
46984824 TCACGTGTGTAGTACTAAGTGCAGGCTACTAAGTGTACCAGATAATTGGTCGCATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTAAGTGTACCAGATAATTGGTCGCATGTGTAGTACT
*
46984889 AAGTGTAGGCTACTATGCGTACCAGATA
66 AAGTGCAGGCTACTATGCGTACCAGATA
46984917 GCTTTGGCTA
Statistics
Matches: 89, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
100 89 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (100 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTAAGTGTACCAGATAATTGGTCGCATGTGTAGTACT
AAGTGCAGGCTACTATGCGTACCAGATAACTTCGA
Found at i:46990251 original size:47 final size:44
Alignment explanation
Indices: 46990105--46990400 Score: 218
Period size: 47 Copynumber: 6.5 Consensus size: 44
46990095 GGTGTTACAT
* * * * *
46990105 GATGCATGTCCTATACATGTTTTACACTAGCA-CAACTCTTAGTC
1 GATGCATGTCCCAGACATGTCTTACACTAGCATCATCTC-TAGCC
* * * *
46990149 GATGCATGTCCCAGTCACGTCTTACACTAGCTATCATTGTCGAGGCC
1 GATGCATGTCCCAGACATGTCTTACACTAGC-ATCA-TCTCTA-GCC
* *
46990196 AATGCATGTCCTAGACATGTCTTACACTAGCACTCATCTCTACGCC
1 GATGCATGTCCCAGACATGTCTTACACTAGCA-TCATCTCTA-GCC
* * * * * * *
46990242 GATGTCATGTCCCAGAAATGGTCTTACACTGGCTCTCATAATGTGGCT
1 GATG-CATGTCCCAGACAT-GTCTTACACTAGC-ATCAT-CTCTAGCC
* *
46990290 GATGCATGTCCCATACATGTCTTACACTAGCA-CAACTCTTAGCC
1 GATGCATGTCCCAGACATGTCTTACACTAGCATCATCTC-TAGCC
* * * * * * *
46990334 GATGCATGTCCCAGACATGTTTTGCACTGGCTATCATAATGTGGCT
1 GATGCATGTCCCAGACATGTCTTACACTAGC-ATCAT-CTCTAGCC
46990380 GATGCATGTCCCAGACATGTC
1 GATGCATGTCCCAGACATGTC
46990401 CAAAATGTCT
Statistics
Matches: 195, Mismatches: 44, Indels: 24
0.74 0.17 0.09
Matches are distributed among these distances:
43 1 0.01
44 58 0.30
45 2 0.01
46 51 0.26
47 59 0.30
48 22 0.11
49 2 0.01
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.30
Consensus pattern (44 bp):
GATGCATGTCCCAGACATGTCTTACACTAGCATCATCTCTAGCC
Found at i:46990387 original size:90 final size:90
Alignment explanation
Indices: 46990104--46990400 Score: 362
Period size: 94 Copynumber: 3.2 Consensus size: 90
46990094 GGGTGTTACA
* * * * * *
46990104 TGATGCATGTCCTATACATGTTTTACACTAGCACAACTCTTAGTCGATGCATGTCCCAGTCACGT
1 TGATGCATGTCCCAGACATGTCTTACACTAGCACAACTCTTAGCCGATGCATGTCCCAGACATGT
* ** *
46990169 CTTACACTAGCTATCATTGTCGAGGC
66 CTTACACTGGCTATCATAAT-GTGGC
** * * *
46990195 CAATGCATGTCCTAGACATGTCTTACACTAGCAC-TCATCTCTACGCCGATGTCATGTCCCAGAA
1 TGATGCATGTCCCAGACATGTCTTACACTAGCACAAC-TCT-TA-GCCGATG-CATGTCCCAGAC
*
46990259 ATGGTCTTACACTGGCTCTCATAATGTGGC
62 AT-GTCTTACACTGGCTATCATAATGTGGC
*
46990289 TGATGCATGTCCCATACATGTCTTACACTAGCACAACTCTTAGCCGATGCATGTCCCAGACATGT
1 TGATGCATGTCCCAGACATGTCTTACACTAGCACAACTCTTAGCCGATGCATGTCCCAGACATGT
* *
46990354 TTTGCACTGGCTATCATAATGTGGC
66 CTTACACTGGCTATCATAATGTGGC
46990379 TGATGCATGTCCCAGACATGTC
1 TGATGCATGTCCCAGACATGTC
46990401 CAAAATGTCT
Statistics
Matches: 176, Mismatches: 24, Indels: 13
0.83 0.11 0.06
Matches are distributed among these distances:
90 46 0.26
91 46 0.26
92 9 0.05
93 8 0.05
94 48 0.27
95 19 0.11
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.30
Consensus pattern (90 bp):
TGATGCATGTCCCAGACATGTCTTACACTAGCACAACTCTTAGCCGATGCATGTCCCAGACATGT
CTTACACTGGCTATCATAATGTGGC
Found at i:46993976 original size:6 final size:6
Alignment explanation
Indices: 46993965--46993989 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
46993955 CATATATCTT
46993965 AATCAA AATCAA AATCAA AATCAA A
1 AATCAA AATCAA AATCAA AATCAA A
46993990 CCAATCAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.68, C:0.16, G:0.00, T:0.16
Consensus pattern (6 bp):
AATCAA
Found at i:46997557 original size:34 final size:33
Alignment explanation
Indices: 46997459--46997557 Score: 108
Period size: 34 Copynumber: 2.9 Consensus size: 33
46997449 TCACTAAATT
* *
46997459 ATTCATCGGTTTATTCGACTAGTGCTAGGCGCAAC
1 ATTCATCAGTTTATCCGACTAGTGCT-GG-GCAAC
* * *
46997494 CTTCATCAGTTTATCTGACTAGTGTTGGGCACAC
1 ATTCATCAGTTTATCCGACTAGTGCTGGGCA-AC
* *
46997528 ATTCGTCAGTTTATCCGACTAGCGCTGGGC
1 ATTCATCAGTTTATCCGACTAGTGCTGGGC
46997558 GTAAATATTG
Statistics
Matches: 53, Mismatches: 10, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
33 3 0.06
34 29 0.55
35 21 0.40
ACGTcount: A:0.20, C:0.24, G:0.23, T:0.32
Consensus pattern (33 bp):
ATTCATCAGTTTATCCGACTAGTGCTGGGCAAC
Found at i:46999217 original size:15 final size:16
Alignment explanation
Indices: 46999171--46999224 Score: 58
Period size: 15 Copynumber: 3.4 Consensus size: 16
46999161 TAAAAATATT
*
46999171 TATATTAATTTAATTTCA
1 TATATTAA--TAATTTTA
46999189 TAT-TTAATAATTTTA
1 TATATTAATAATTTTA
*
46999204 TATATTAA-AATTTTT
1 TATATTAATAATTTTA
46999219 TATATT
1 TATATT
46999225 GTCATTTTAA
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
15 22 0.67
16 4 0.12
17 4 0.12
18 3 0.09
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (16 bp):
TATATTAATAATTTTA
Found at i:46999994 original size:15 final size:16
Alignment explanation
Indices: 46999968--46999997 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
46999958 TTTTATTTTA
46999968 ATAATAAATTTTAAAG
1 ATAATAAATTTTAAAG
46999984 ATAAT-AATTTTAAA
1 ATAATAAATTTTAAA
46999998 TAATATTCTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.57, C:0.00, G:0.03, T:0.40
Consensus pattern (16 bp):
ATAATAAATTTTAAAG
Found at i:47000087 original size:15 final size:16
Alignment explanation
Indices: 47000038--47000087 Score: 50
Period size: 15 Copynumber: 3.1 Consensus size: 16
47000028 TTTAAATTAG
47000038 TATT-TTAATAATAAA
1 TATTATTAATAATAAA
*
47000053 TATTTATTAAAATTATAAA
1 TA-TTATT--AATAATAAA
47000072 TA-TATTAATAATAAA
1 TATTATTAATAATAAA
47000087 T
1 T
47000088 GTTTTGTAGT
Statistics
Matches: 29, Mismatches: 2, Indels: 8
0.74 0.05 0.21
Matches are distributed among these distances:
15 11 0.38
16 2 0.07
17 6 0.21
19 10 0.34
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (16 bp):
TATTATTAATAATAAA
Found at i:47000369 original size:27 final size:26
Alignment explanation
Indices: 47000329--47000383 Score: 76
Period size: 27 Copynumber: 2.1 Consensus size: 26
47000319 TGAATTTAAC
47000329 AAAATATGACATATTATAATCTAATATA
1 AAAATATGACATATTATAAT-T-ATATA
*
47000357 AAAATATGA-ATATTTTAATTATATA
1 AAAATATGACATATTATAATTATATA
47000382 AA
1 AA
47000384 TATGAGTATT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
25 7 0.27
26 1 0.04
27 9 0.35
28 9 0.35
ACGTcount: A:0.55, C:0.04, G:0.04, T:0.38
Consensus pattern (26 bp):
AAAATATGACATATTATAATTATATA
Found at i:47007597 original size:36 final size:36
Alignment explanation
Indices: 47007555--47007636 Score: 110
Period size: 36 Copynumber: 2.3 Consensus size: 36
47007545 TTTATCAATA
* * *
47007555 TCATTCAGTAACAATTAATTATTCAGTAGCAATCAG
1 TCATTCAGTAACAATCAATCATTCAGTAACAATCAG
* *
47007591 TTATTCAGTAATAATCAATCATTCAGTAACAATCAG
1 TCATTCAGTAACAATCAATCATTCAGTAACAATCAG
*
47007627 TCATTTAGTA
1 TCATTCAGTA
47007637 CCTTTATTCA
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
36 39 1.00
ACGTcount: A:0.39, C:0.16, G:0.10, T:0.35
Consensus pattern (36 bp):
TCATTCAGTAACAATCAATCATTCAGTAACAATCAG
Found at i:47007630 original size:18 final size:18
Alignment explanation
Indices: 47007554--47007636 Score: 94
Period size: 18 Copynumber: 4.6 Consensus size: 18
47007544 ATTTATCAAT
*
47007554 ATCATTCAGTAACAATTA
1 ATCATTCAGTAACAATCA
* *
47007572 ATTATTCAGTAGCAATCA
1 ATCATTCAGTAACAATCA
* * *
47007590 GTTATTCAGTAATAATCA
1 ATCATTCAGTAACAATCA
47007608 ATCATTCAGTAACAATCA
1 ATCATTCAGTAACAATCA
* *
47007626 GTCATTTAGTA
1 ATCATTCAGTA
47007637 CCTTTATTCA
Statistics
Matches: 54, Mismatches: 11, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 54 1.00
ACGTcount: A:0.40, C:0.16, G:0.10, T:0.35
Consensus pattern (18 bp):
ATCATTCAGTAACAATCA
Found at i:47007837 original size:44 final size:44
Alignment explanation
Indices: 47007780--47007880 Score: 107
Period size: 44 Copynumber: 2.3 Consensus size: 44
47007770 CAGATTAAAC
* * *
47007780 CGAAGTC-ACAGTAACAGTATGACACACATGGTGGCTCATCGACT
1 CGAAGTCGA-AGTAACAGTACGACACACATAGTGCCTCATCGACT
* **
47007824 CGAAGTCGAAGTAATAGTACGACACTTATAGTGCCTCATCGACT
1 CGAAGTCGAAGTAACAGTACGACACACATAGTGCCTCATCGACT
*
47007868 -AAAGGTCGAAGTA
1 CGAA-GTCGAAGTA
47007881 TCCCTGAACA
Statistics
Matches: 48, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
43 2 0.04
44 45 0.94
45 1 0.02
ACGTcount: A:0.34, C:0.22, G:0.23, T:0.22
Consensus pattern (44 bp):
CGAAGTCGAAGTAACAGTACGACACACATAGTGCCTCATCGACT
Found at i:47009252 original size:19 final size:18
Alignment explanation
Indices: 47009228--47009264 Score: 56
Period size: 19 Copynumber: 2.0 Consensus size: 18
47009218 TTATTTATTT
47009228 TATTTAATTAATATAATAA
1 TATTTAATTAA-ATAATAA
*
47009247 TATTTACTTAAATAATAA
1 TATTTAATTAAATAATAA
47009265 GTAAATAATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 7 0.41
19 10 0.59
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (18 bp):
TATTTAATTAAATAATAA
Found at i:47010374 original size:16 final size:17
Alignment explanation
Indices: 47010353--47010390 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 17
47010343 TTCTATAGGG
*
47010353 ATTTTACT-TTTATTTT
1 ATTTTACTATGTATTTT
47010369 ATTTTACTACTGTATTTT
1 ATTTTACTA-TGTATTTT
47010387 ATTT
1 ATTT
47010391 AAATAAGGAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
16 8 0.42
18 11 0.58
ACGTcount: A:0.21, C:0.08, G:0.03, T:0.68
Consensus pattern (17 bp):
ATTTTACTATGTATTTT
Found at i:47014274 original size:25 final size:25
Alignment explanation
Indices: 47014240--47014292 Score: 106
Period size: 25 Copynumber: 2.1 Consensus size: 25
47014230 TGGCCTCTAA
47014240 GTTTGAGAGAATTTCTTTAAACACT
1 GTTTGAGAGAATTTCTTTAAACACT
47014265 GTTTGAGAGAATTTCTTTAAACACT
1 GTTTGAGAGAATTTCTTTAAACACT
47014290 GTT
1 GTT
47014293 AAGTGTTCGT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.30, C:0.11, G:0.17, T:0.42
Consensus pattern (25 bp):
GTTTGAGAGAATTTCTTTAAACACT
Found at i:47020901 original size:16 final size:16
Alignment explanation
Indices: 47020880--47020911 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
47020870 ATATTAGTAG
47020880 ATAATTCAAACATGTT
1 ATAATTCAAACATGTT
47020896 ATAATTCAAACATGTT
1 ATAATTCAAACATGTT
47020912 CTTAGTCTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.44, C:0.12, G:0.06, T:0.38
Consensus pattern (16 bp):
ATAATTCAAACATGTT
Found at i:47024240 original size:48 final size:48
Alignment explanation
Indices: 47024163--47024301 Score: 197
Period size: 48 Copynumber: 2.9 Consensus size: 48
47024153 CGTACTAAAA
* **
47024163 GTGCCTGTGTAAGACCATAACTGGGACATGGCATCGGTGATGATATAT
1 GTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGTGATGATATAT
* * * *
47024211 GTGCTAGTGTAAGACCATGTCTGAGACATGGTATCGGTGATGATATGT
1 GTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGTGATGATATAT
* *
47024259 GTGCCAGTGTAAGACCATGTCTGGGACATGTCATTGGTGATGA
1 GTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGTGATGA
47024302 GATGTGGATT
Statistics
Matches: 79, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
48 79 1.00
ACGTcount: A:0.25, C:0.15, G:0.31, T:0.29
Consensus pattern (48 bp):
GTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGTGATGATATAT
Found at i:47024307 original size:48 final size:48
Alignment explanation
Indices: 47024163--47024336 Score: 194
Period size: 48 Copynumber: 3.6 Consensus size: 48
47024153 CGTACTAAAA
* ** * *
47024163 GTGCCTGTGTAAGACCATAACTGGGACATGGCATCGGTGATGATATAT
1 GTGCCAGTGTAAGACCATGTCTGGGACATGTCATCGGTGATGATATGT
* *
47024211 GTGCTAGTGTAAGACCATGTCTGAGACATGGT-ATCGGTGATGATATGT
1 GTGCCAGTGTAAGACCATGTCTGGGACAT-GTCATCGGTGATGATATGT
* *
47024259 GTGCCAGTGTAAGACCATGTCTGGGACATGTCATTGGTGATGAGATGT
1 GTGCCAGTGTAAGACCATGTCTGGGACATGTCATCGGTGATGATATGT
*
47024307 G-GATTCA-TGTAAGACCATGT-TGGGGACATG
1 GTG--CCAGTGTAAGACCATGTCT-GGGACATG
47024337 GGATTGGTAC
Statistics
Matches: 109, Mismatches: 12, Indels: 10
0.83 0.09 0.08
Matches are distributed among these distances:
47 4 0.04
48 102 0.94
49 3 0.03
ACGTcount: A:0.25, C:0.14, G:0.32, T:0.29
Consensus pattern (48 bp):
GTGCCAGTGTAAGACCATGTCTGGGACATGTCATCGGTGATGATATGT
Found at i:47040149 original size:7 final size:7
Alignment explanation
Indices: 47040137--47040161 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
47040127 CCCTCAATAT
47040137 TAACCCA
1 TAACCCA
47040144 TAACCCA
1 TAACCCA
47040151 TAACCCA
1 TAACCCA
47040158 TAAC
1 TAAC
47040162 TCTTAGTGAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.44, C:0.40, G:0.00, T:0.16
Consensus pattern (7 bp):
TAACCCA
Found at i:47047893 original size:32 final size:32
Alignment explanation
Indices: 47047853--47047942 Score: 144
Period size: 32 Copynumber: 2.8 Consensus size: 32
47047843 ATGGTACAAT
47047853 TTGAAAAGGTTATGTACACTTTGTGTGCACAC
1 TTGAAAAGGTTATGTACACTTTGTGTGCACAC
*
47047885 TTGAAAAGGTTATGTACACTTTGTGTGTACAC
1 TTGAAAAGGTTATGTACACTTTGTGTGCACAC
* * *
47047917 TTGGAAAGGTTAGGTATACTTTGTGT
1 TTGAAAAGGTTATGTACACTTTGTGT
47047943 ATACCATATG
Statistics
Matches: 54, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
32 54 1.00
ACGTcount: A:0.27, C:0.11, G:0.24, T:0.38
Consensus pattern (32 bp):
TTGAAAAGGTTATGTACACTTTGTGTGCACAC
Found at i:47047956 original size:32 final size:33
Alignment explanation
Indices: 47047857--47047982 Score: 134
Period size: 32 Copynumber: 3.9 Consensus size: 33
47047847 TACAATTTGA
* * * *
47047857 AAAGGTTATGTACACTTTGTGTGCA-CACTTGA
1 AAAGGTTAGGTATACTTTGTGTGTACCACTTGG
* *
47047889 AAAGGTTATGTACACTTTGTGTGTA-CACTTGG
1 AAAGGTTAGGTATACTTTGTGTGTACCACTTGG
*
47047921 AAAGGTTAGGTATACTTTGTGTATACCA-TAT-G
1 AAAGGTTAGGTATACTTTGTGTGTACCACT-TGG
**
47047953 AAAGGAAAGGTATACTTTGTGTGTACCACT
1 AAAGGTTAGGTATACTTTGTGTGTACCACT
47047983 CAGAAATAAA
Statistics
Matches: 83, Mismatches: 8, Indels: 5
0.86 0.08 0.05
Matches are distributed among these distances:
32 79 0.95
33 4 0.05
ACGTcount: A:0.29, C:0.13, G:0.23, T:0.35
Consensus pattern (33 bp):
AAAGGTTAGGTATACTTTGTGTGTACCACTTGG
Found at i:47054298 original size:32 final size:32
Alignment explanation
Indices: 47054258--47054416 Score: 203
Period size: 32 Copynumber: 4.9 Consensus size: 32
47054248 ATGGTACAAT
47054258 TTGAAAAGGTTATGTACACTTTGTGTGTACAC
1 TTGAAAAGGTTATGTACACTTTGTGTGTACAC
47054290 TTGAAAAGGTTATGTACACTTTGTGTGTACAC
1 TTGAAAAGGTTATGTACACTTTGTGTGTACAC
*
47054322 TTAAAAAGGTTATGTACACTTTGTGTGTACAC
1 TTGAAAAGGTTATGTACACTTTGTGTGTACAC
* * * * *
47054354 TTGGAAAGGTTAGGTATACTTTATGTATAC-C
1 TTGAAAAGGTTATGTACACTTTGTGTGTACAC
** * *
47054385 ATATGAAAAGGAAAGGTATACTTTGTGTGTAC
1 -T-TGAAAAGGTTATGTACACTTTGTGTGTAC
47054417 CACTCAGAAA
Statistics
Matches: 113, Mismatches: 12, Indels: 3
0.88 0.09 0.02
Matches are distributed among these distances:
31 1 0.01
32 88 0.78
33 24 0.21
ACGTcount: A:0.31, C:0.11, G:0.22, T:0.36
Consensus pattern (32 bp):
TTGAAAAGGTTATGTACACTTTGTGTGTACAC
Found at i:47060406 original size:93 final size:93
Alignment explanation
Indices: 47060247--47060417 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
47060237 GGATGGTTGA
* * *
47060247 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGCCCGAACTCCTTGAGT
47060312 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
47060340 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCCTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGCCCGAACTCCTTGAGT
47060405 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
47060418 ACTTAGGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.21, C:0.23, G:0.29, T:0.27
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGCCCGAACTCCTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:47060420 original size:46 final size:46
Alignment explanation
Indices: 47060251--47060422 Score: 199
Period size: 46 Copynumber: 3.7 Consensus size: 46
47060241 GGTTGAGCAT
* * *
47060251 CCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATGT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
* * *
47060297 CCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---GC
47060342 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
* *
47060390 CCGAGCTCCTTGAGTTGAGTCCGAGTTCACTTA
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
47060423 GGGGCTGGTT
Statistics
Matches: 106, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 2 0.02
46 59 0.56
47 28 0.26
48 4 0.04
50 4 0.04
51 3 0.03
ACGTcount: A:0.22, C:0.23, G:0.28, T:0.28
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
Found at i:47063249 original size:48 final size:48
Alignment explanation
Indices: 47063189--47063512 Score: 373
Period size: 48 Copynumber: 6.8 Consensus size: 48
47063179 ACCGTACTAA
* * *
47063189 ATGTGCCTATGTAAGACAATGTCTAGGACATGGCATCGGCGATGATAT
1 ATGTGCCAATGTAAGACCATGTCTGGGACATGGCATCGGCGATGATAT
* * * **
47063237 ATGTGCCAATGTAAGACTATGTCTAGGACATGTCATCAACGATGATAT
1 ATGTGCCAATGTAAGACCATGTCTGGGACATGGCATCGGCGATGATAT
* * *
47063285 ATTTGCTAATGTAAGACCATGTCTGGGACATGGCATCGGCAATGATAT
1 ATGTGCCAATGTAAGACCATGTCTGGGACATGGCATCGGCGATGATAT
* * *
47063333 ATGTGCCAGTGTAAGACCATGTCTGGGATATGGCATCGGCAATGATAT
1 ATGTGCCAATGTAAGACCATGTCTGGGACATGGCATCGGCGATGATAT
* * * *
47063381 ATGTGCCAGTGTAAGACTATGTCTGGGACATGGCATCGACGATGGTAT
1 ATGTGCCAATGTAAGACCATGTCTGGGACATGGCATCGGCGATGATAT
* * * * * *
47063429 GTGTGCCAGTGTAAGACCATGTCCGGGACATGACATCGGTGATGAGAT
1 ATGTGCCAATGTAAGACCATGTCTGGGACATGGCATCGGCGATGATAT
* * *
47063477 GTG-GATTC-ATGTAAGACCATGTCGGGGACATGGCAT
1 ATGTG--CCAATGTAAGACCATGTCTGGGACATGGCAT
47063513 TAGTACTTAT
Statistics
Matches: 240, Mismatches: 34, Indels: 4
0.86 0.12 0.01
Matches are distributed among these distances:
47 1 0.00
48 238 0.99
49 1 0.00
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.27
Consensus pattern (48 bp):
ATGTGCCAATGTAAGACCATGTCTGGGACATGGCATCGGCGATGATAT
Found at i:47063490 original size:144 final size:143
Alignment explanation
Indices: 47063189--47063512 Score: 416
Period size: 144 Copynumber: 2.2 Consensus size: 143
47063179 ACCGTACTAA
* * *
47063189 ATGTGCCTATGTAAGACAATGTCTAGGACATGGCATCGGCGATGATATATGTGCCAATGTAAGAC
1 ATGTGCC-ATGTAAGACCATGTCTGGGACATGGCATCGGCAATGATATATGTGCCAATGTAAGAC
* * * * *
47063254 TATGTCTAGGACATGTCATCAACGATGATATATTTGCTAATGTAAGACCATGTCTGGGACATGGC
65 TATGTCTAGGACATGGCATCAACGATGATATATGTGCCAATGTAAGACCATGTCCGGGACATGAC
*
47063319 ATCGGCAATGATAT
130 ATCGGCAATGAGAT
* *
47063333 ATGTGCCAGTGTAAGACCATGTCTGGGATATGGCATCGGCAATGATATATGTGCCAGTGTAAGAC
1 ATGTGCCA-TGTAAGACCATGTCTGGGACATGGCATCGGCAATGATATATGTGCCAATGTAAGAC
* * * * *
47063398 TATGTCTGGGACATGGCATCGACGATGGTATGTGTGCCAGTGTAAGACCATGTCCGGGACATGAC
65 TATGTCTAGGACATGGCATCAACGATGATATATGTGCCAATGTAAGACCATGTCCGGGACATGAC
**
47063463 ATCGGTGATGAGAT
130 ATCGGCAATGAGAT
* * *
47063477 GTG-GATTCATGTAAGACCATGTCGGGGACATGGCAT
1 ATGTG--CCATGTAAGACCATGTCTGGGACATGGCAT
47063513 TAGTACTTAT
Statistics
Matches: 155, Mismatches: 22, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
143 2 0.01
144 151 0.97
145 2 0.01
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.27
Consensus pattern (143 bp):
ATGTGCCATGTAAGACCATGTCTGGGACATGGCATCGGCAATGATATATGTGCCAATGTAAGACT
ATGTCTAGGACATGGCATCAACGATGATATATGTGCCAATGTAAGACCATGTCCGGGACATGACA
TCGGCAATGAGAT
Found at i:47064848 original size:22 final size:22
Alignment explanation
Indices: 47064802--47064848 Score: 76
Period size: 22 Copynumber: 2.1 Consensus size: 22
47064792 CGCACGGGTT
*
47064802 TGTCATTGTGTCCACACGAGTG
1 TGTCATTGTGTCCACACGAGCG
*
47064824 TGTCATTGTGTCCACACGGGCG
1 TGTCATTGTGTCCACACGAGCG
47064846 TGT
1 TGT
47064849 GACCCTGTTC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.15, C:0.23, G:0.30, T:0.32
Consensus pattern (22 bp):
TGTCATTGTGTCCACACGAGCG
Found at i:47065162 original size:14 final size:15
Alignment explanation
Indices: 47065129--47065164 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
47065119 AAACTAAGGT
47065129 TTTTTAAAACATCTA
1 TTTTTAAAACATCTA
* *
47065144 TTTTTAAAATATTTA
1 TTTTTAAAACATCTA
47065159 TTTTTA
1 TTTTTA
47065165 TTTAAATTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.36, C:0.06, G:0.00, T:0.58
Consensus pattern (15 bp):
TTTTTAAAACATCTA
Found at i:47069284 original size:27 final size:28
Alignment explanation
Indices: 47069233--47069288 Score: 96
Period size: 27 Copynumber: 2.0 Consensus size: 28
47069223 TTATCTGGGT
47069233 TATAACAAGACAAATCATATTATTTTAAG
1 TATAACAAGAC-AATCATATTATTTTAAG
47069262 TATAACAAGAC-ATCATATTATTTTAAG
1 TATAACAAGACAATCATATTATTTTAAG
47069289 GGTGTTTTTA
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
27 16 0.59
29 11 0.41
ACGTcount: A:0.46, C:0.11, G:0.07, T:0.36
Consensus pattern (28 bp):
TATAACAAGACAATCATATTATTTTAAG
Found at i:47071056 original size:45 final size:45
Alignment explanation
Indices: 47070992--47071102 Score: 186
Period size: 45 Copynumber: 2.5 Consensus size: 45
47070982 CTATTTTTTT
*
47070992 TATTTTAAGAATTTTTTACACACTAGATATTTTTGGGAAATTACA
1 TATTTTAAGAATTTTTTACACACTAGATATTTTTAGGAAATTACA
* *
47071037 TATTTTAAGAATTTTTTACACACTAGATTTTTTTAGGAAATTACC
1 TATTTTAAGAATTTTTTACACACTAGATATTTTTAGGAAATTACA
*
47071082 TGTTTTAAGAATTTTTTACAC
1 TATTTTAAGAATTTTTTACAC
47071103 TATTATTTGT
Statistics
Matches: 62, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
45 62 1.00
ACGTcount: A:0.33, C:0.10, G:0.10, T:0.47
Consensus pattern (45 bp):
TATTTTAAGAATTTTTTACACACTAGATATTTTTAGGAAATTACA
Found at i:47071555 original size:32 final size:32
Alignment explanation
Indices: 47071519--47071585 Score: 82
Period size: 32 Copynumber: 2.1 Consensus size: 32
47071509 GGTTGGGGTG
**
47071519 AATGGAATAGGGCTGTAAT-AGAATAGAGATGT
1 AATGGAATAGAACTGTAATGA-AATAGAGATGT
* *
47071551 AATGGAATATAACTGTAATGAAATAGAGTTGT
1 AATGGAATAGAACTGTAATGAAATAGAGATGT
47071583 AAT
1 AAT
47071586 CAGTAATTCA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
32 29 0.97
33 1 0.03
ACGTcount: A:0.43, C:0.03, G:0.25, T:0.28
Consensus pattern (32 bp):
AATGGAATAGAACTGTAATGAAATAGAGATGT
Found at i:47071892 original size:58 final size:59
Alignment explanation
Indices: 47071764--47071892 Score: 190
Period size: 58 Copynumber: 2.2 Consensus size: 59
47071754 TTTTAATAAG
* * *
47071764 ATTATTACTAAATATAATTTAATAAAAATAATGATATAATTTAATAATATTTTAACATA
1 ATTATTATTAAATACAATTTAATAAAAATAATGATATAATTTAATAACATTTTAACATA
*
47071823 ATTATTATTAAATACAATTTAAT-AAAATAAT-ATATAATTTAATAACATTCTTAATATA
1 ATTATTATTAAATACAATTTAATAAAAATAATGATATAATTTAATAACATT-TTAACATA
*
47071881 ATTATTTTTAAA
1 ATTATTATTAAA
47071893 ATATGAATTA
Statistics
Matches: 64, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
57 17 0.27
58 26 0.41
59 21 0.33
ACGTcount: A:0.51, C:0.04, G:0.01, T:0.44
Consensus pattern (59 bp):
ATTATTATTAAATACAATTTAATAAAAATAATGATATAATTTAATAACATTTTAACATA
Found at i:47071904 original size:59 final size:58
Alignment explanation
Indices: 47071764--47071906 Score: 191
Period size: 59 Copynumber: 2.4 Consensus size: 58
47071754 TTTTAATAAG
* *
47071764 ATTATTACTAAATATAATTTAATAAAAATAATGATATAATTTAATAATATTTTAACATA
1 ATTATTATTAAATATAATTTAAT-AAAATAATGATATAATTTAATAACATTTTAACATA
* *
47071823 ATTATTATTAAATACAATTTAATAAAATAAT-ATATAATTTAATAACATTCTTAATATA
1 ATTATTATTAAATATAATTTAATAAAATAATGATATAATTTAATAACATT-TTAACATA
*
47071881 ATTATTTTTAAAATATGAA-TTAATAA
1 ATTATTATT-AAATAT-AATTTAATAA
47071907 GAATCATAAT
Statistics
Matches: 75, Mismatches: 6, Indels: 6
0.86 0.07 0.07
Matches are distributed among these distances:
57 17 0.23
58 23 0.31
59 33 0.44
60 2 0.03
ACGTcount: A:0.52, C:0.03, G:0.01, T:0.43
Consensus pattern (58 bp):
ATTATTATTAAATATAATTTAATAAAATAATGATATAATTTAATAACATTTTAACATA
Found at i:47080456 original size:34 final size:34
Alignment explanation
Indices: 47080413--47080479 Score: 134
Period size: 34 Copynumber: 2.0 Consensus size: 34
47080403 ATGAGTTAGC
47080413 ATTCAATTCCTCATTAAAAGCAATGTCTCTAACA
1 ATTCAATTCCTCATTAAAAGCAATGTCTCTAACA
47080447 ATTCAATTCCTCATTAAAAGCAATGTCTCTAAC
1 ATTCAATTCCTCATTAAAAGCAATGTCTCTAAC
47080480 CTTATTTCTC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.37, C:0.24, G:0.06, T:0.33
Consensus pattern (34 bp):
ATTCAATTCCTCATTAAAAGCAATGTCTCTAACA
Found at i:47080470 original size:17 final size:17
Alignment explanation
Indices: 47080416--47080470 Score: 53
Period size: 17 Copynumber: 3.2 Consensus size: 17
47080406 AGTTAGCATT
47080416 CAATTCCTCATTAAAAG
1 CAATTCCTCATTAAAAG
*
47080433 CAATGT-CTC--TAACAATT
1 CAAT-TCCTCATTAA-AA-G
47080450 CAATTCCTCATTAAAAG
1 CAATTCCTCATTAAAAG
47080467 CAAT
1 CAAT
47080471 GTCTCTAACC
Statistics
Matches: 30, Mismatches: 2, Indels: 12
0.68 0.05 0.27
Matches are distributed among these distances:
15 3 0.10
16 3 0.10
17 18 0.60
18 3 0.10
19 3 0.10
ACGTcount: A:0.40, C:0.24, G:0.05, T:0.31
Consensus pattern (17 bp):
CAATTCCTCATTAAAAG
Found at i:47086255 original size:40 final size:40
Alignment explanation
Indices: 47086193--47086273 Score: 117
Period size: 40 Copynumber: 2.0 Consensus size: 40
47086183 GGAATTATGA
*
47086193 GGCACTGTATGTGCAAGCTCTTCAACCGAGCACTATGTGT
1 GGCACTATATGTGCAAGCTCTTCAACCGAGCACTATGTGT
* * * *
47086233 GGCACTATGTGTGCGAGTTCTTCAATCGAGCACTATGTGT
1 GGCACTATATGTGCAAGCTCTTCAACCGAGCACTATGTGT
47086273 G
1 G
47086274 CGAGATTGGT
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 36 1.00
ACGTcount: A:0.21, C:0.22, G:0.27, T:0.30
Consensus pattern (40 bp):
GGCACTATATGTGCAAGCTCTTCAACCGAGCACTATGTGT
Found at i:47086304 original size:29 final size:27
Alignment explanation
Indices: 47086234--47086333 Score: 137
Period size: 28 Copynumber: 3.6 Consensus size: 27
47086224 ACTATGTGTG
47086234 GCACTATGTGTGCGAGTTCTTCAATCGA
1 GCACTATGTGTGCGAGTTCTT-AATCGA
** *
47086262 GCACTATGTGTGCGAGATTGGTAATTGA
1 GCACTATGTGTGCGAG-TTCTTAATCGA
47086290 GGCACTATGTGTGCGAGTTCTTTAATCGA
1 -GCACTATGTGTGCGAGTTC-TTAATCGA
47086319 GCACTATGTGTGCGA
1 GCACTATGTGTGCGA
47086334 AATCAGTCAG
Statistics
Matches: 63, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
28 38 0.60
29 25 0.40
ACGTcount: A:0.22, C:0.17, G:0.29, T:0.32
Consensus pattern (27 bp):
GCACTATGTGTGCGAGTTCTTAATCGA
Found at i:47091736 original size:19 final size:19
Alignment explanation
Indices: 47091699--47091737 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
47091689 AAATCTGAAT
**
47091699 TCTTTCTTCTTCTTTTCTC
1 TCTTTCTTCTTCTCATCTC
*
47091718 TCTTTCTTTTTCTCATCTC
1 TCTTTCTTCTTCTCATCTC
47091737 T
1 T
47091738 TCCTTCCTTG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.03, C:0.31, G:0.00, T:0.67
Consensus pattern (19 bp):
TCTTTCTTCTTCTCATCTC
Found at i:47095856 original size:22 final size:22
Alignment explanation
Indices: 47095831--47095872 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
47095821 CATAAAATTT
47095831 AAAAAGAA-AAATGAATCAATCC
1 AAAAAGAATAAA-GAATCAATCC
*
47095853 AAAAATAATAAAGAATCAAT
1 AAAAAGAATAAAGAATCAAT
47095873 TCATTCTCAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 15 0.83
23 3 0.17
ACGTcount: A:0.67, C:0.10, G:0.07, T:0.17
Consensus pattern (22 bp):
AAAAAGAATAAAGAATCAATCC
Found at i:47096568 original size:21 final size:21
Alignment explanation
Indices: 47096542--47096582 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
47096532 TCATTTAGGC
*
47096542 ACAATTTGCTTTGCTGGTTTT
1 ACAATTTGCTTTGCTAGTTTT
47096563 ACAATTTGCTTTGCTAGTTT
1 ACAATTTGCTTTGCTAGTTT
47096583 ATATCCAAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.17, C:0.15, G:0.17, T:0.51
Consensus pattern (21 bp):
ACAATTTGCTTTGCTAGTTTT
Found at i:47100273 original size:20 final size:20
Alignment explanation
Indices: 47100248--47100287 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
47100238 AAAGAATGGT
47100248 TAAAGTAATGGTTTTTCGAA
1 TAAAGTAATGGTTTTTCGAA
47100268 TAAAGTAATGGTTTTTCGAA
1 TAAAGTAATGGTTTTTCGAA
47100288 GAGGCAATAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.35, C:0.05, G:0.20, T:0.40
Consensus pattern (20 bp):
TAAAGTAATGGTTTTTCGAA
Found at i:47100551 original size:21 final size:21
Alignment explanation
Indices: 47100527--47100581 Score: 56
Period size: 21 Copynumber: 2.6 Consensus size: 21
47100517 TTTGCTATTA
* * *
47100527 TTTGTTACTATTTTGTTGTTG
1 TTTGCTACCATTTTGATGTTG
*
47100548 TTTGCTACCATTTTGATGTTAT
1 TTTGCTACCATTTTGATGTT-G
*
47100570 TTTGCTGCCATT
1 TTTGCTACCATT
47100582 CTCCTATTAT
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
21 17 0.61
22 11 0.39
ACGTcount: A:0.13, C:0.13, G:0.16, T:0.58
Consensus pattern (21 bp):
TTTGCTACCATTTTGATGTTG
Found at i:47100812 original size:16 final size:18
Alignment explanation
Indices: 47100791--47100823 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
47100781 TGATGTATTA
47100791 TATTTTT-TA-AAAAATT
1 TATTTTTATATAAAAATT
47100807 TATTTTTATATAAAAAT
1 TATTTTTATATAAAAAT
47100824 AATATAAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 2 0.13
18 6 0.40
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (18 bp):
TATTTTTATATAAAAATT
Found at i:47104386 original size:13 final size:13
Alignment explanation
Indices: 47104368--47104402 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
47104358 TAAGTTATTA
47104368 TATATTAATATAT
1 TATATTAATATAT
* *
47104381 TATATTCATATTT
1 TATATTAATATAT
47104394 TATATTAAT
1 TATATTAAT
47104403 CTGTGTTTTA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.40, C:0.03, G:0.00, T:0.57
Consensus pattern (13 bp):
TATATTAATATAT
Found at i:47106673 original size:41 final size:42
Alignment explanation
Indices: 47106616--47106703 Score: 115
Period size: 41 Copynumber: 2.1 Consensus size: 42
47106606 TTTATCTGAA
* *
47106616 TTTTTGTAAATATTTTGTAGTGTTAATTATAAGTTTTAT-AT
1 TTTTTGTAAATATTTTGTAGTATTAATTATAAGTCTTATAAT
* * * *
47106657 TTTTTGTGAATCTTTTGTATTATTAATTATAGGTCTTATAAT
1 TTTTTGTAAATATTTTGTAGTATTAATTATAAGTCTTATAAT
47106699 TTTTT
1 TTTTT
47106704 TTCCATTTTT
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
41 33 0.82
42 7 0.17
ACGTcount: A:0.26, C:0.02, G:0.11, T:0.60
Consensus pattern (42 bp):
TTTTTGTAAATATTTTGTAGTATTAATTATAAGTCTTATAAT
Found at i:47106767 original size:18 final size:19
Alignment explanation
Indices: 47106715--47106768 Score: 60
Period size: 18 Copynumber: 2.9 Consensus size: 19
47106705 TCCATTTTTT
47106715 TAGTTTTAAGTCTTATTAG
1 TAGTTTTAAGTCTTATTAG
**
47106734 TAGTGTTTCTG-C-TATTAG
1 TAGT-TTTAAGTCTTATTAG
47106752 -AGTTTTAAGTCTTATTA
1 TAGTTTTAAGTCTTATTA
47106769 TTTTTGTTTC
Statistics
Matches: 28, Mismatches: 4, Indels: 7
0.72 0.10 0.18
Matches are distributed among these distances:
16 4 0.14
17 4 0.14
18 11 0.39
19 5 0.18
20 4 0.14
ACGTcount: A:0.24, C:0.07, G:0.17, T:0.52
Consensus pattern (19 bp):
TAGTTTTAAGTCTTATTAG
Found at i:47106806 original size:34 final size:33
Alignment explanation
Indices: 47106752--47106817 Score: 96
Period size: 34 Copynumber: 2.0 Consensus size: 33
47106742 CTGCTATTAG
* *
47106752 AGTTTTAAGTCTTATTATTTTTGTTTCAATTTTT
1 AGTTTTAAGCCTTATCATTTTTGTTTC-ATTTTT
*
47106786 AGTTTTAAGCCTTGTCATTTTTGTTTCATTTT
1 AGTTTTAAGCCTTATCATTTTTGTTTCATTTT
47106818 GGTGAATACT
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
33 5 0.17
34 24 0.83
ACGTcount: A:0.18, C:0.09, G:0.11, T:0.62
Consensus pattern (33 bp):
AGTTTTAAGCCTTATCATTTTTGTTTCATTTTT
Found at i:47112208 original size:23 final size:23
Alignment explanation
Indices: 47112182--47112225 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
47112172 TATTATATTA
47112182 TATTATTATTAAATTTTAATAAT
1 TATTATTATTAAATTTTAATAAT
* *
47112205 TATTATTATTTACTTTTAATA
1 TATTATTATTAAATTTTAATA
47112226 TAAGTAAACA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (23 bp):
TATTATTATTAAATTTTAATAAT
Found at i:47115936 original size:25 final size:25
Alignment explanation
Indices: 47115908--47115973 Score: 69
Period size: 26 Copynumber: 2.6 Consensus size: 25
47115898 TGGAGCCATG
*
47115908 TAACGAGAAGCTCATGTAAGCTGTA
1 TAACGAGAAGCTCATCTAAGCTGTA
* * *
47115933 TAACGAGGTAGCTCAACTGAGCTGTA
1 TAACGA-GAAGCTCATCTAAGCTGTA
* *
47115959 TATCAAGAAGCTCAT
1 TAACGAGAAGCTCAT
47115974 ACGAGTCATA
Statistics
Matches: 32, Mismatches: 8, Indels: 2
0.76 0.19 0.05
Matches are distributed among these distances:
25 13 0.41
26 19 0.59
ACGTcount: A:0.35, C:0.18, G:0.23, T:0.24
Consensus pattern (25 bp):
TAACGAGAAGCTCATCTAAGCTGTA
Found at i:47122783 original size:24 final size:24
Alignment explanation
Indices: 47122737--47122792 Score: 69
Period size: 24 Copynumber: 2.3 Consensus size: 24
47122727 GGCATTTTGC
* *
47122737 TGGCTTTTATGGCGTACTTTGATT
1 TGGCCTTTATGGCGTACTTTGATA
*
47122761 TGGCCTTTATGGTGTA-TTCTGATA
1 TGGCCTTTATGGCGTACTT-TGATA
47122785 TGGCCTTT
1 TGGCCTTT
47122793 GTGAAATTCT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
23 2 0.07
24 26 0.93
ACGTcount: A:0.12, C:0.14, G:0.25, T:0.48
Consensus pattern (24 bp):
TGGCCTTTATGGCGTACTTTGATA
Found at i:47123347 original size:28 final size:28
Alignment explanation
Indices: 47123315--47123376 Score: 90
Period size: 28 Copynumber: 2.2 Consensus size: 28
47123305 TTATCAAGAT
47123315 CAGTAAGGGTATT-TGCCAAAAGCATGAC
1 CAGTAAGGGT-TTCTGCCAAAAGCATGAC
* *
47123343 CAGTAAGGGTTTCTGCCAAAAGTATGAT
1 CAGTAAGGGTTTCTGCCAAAAGCATGAC
47123371 CAGTAA
1 CAGTAA
47123377 ATGATATCTG
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
27 2 0.06
28 29 0.94
ACGTcount: A:0.35, C:0.16, G:0.24, T:0.24
Consensus pattern (28 bp):
CAGTAAGGGTTTCTGCCAAAAGCATGAC
Found at i:47131277 original size:13 final size:13
Alignment explanation
Indices: 47131259--47131283 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
47131249 TTATATAAAG
47131259 TGAAATTTTTATA
1 TGAAATTTTTATA
47131272 TGAAATTTTTAT
1 TGAAATTTTTAT
47131284 TATTTTCATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.00, G:0.08, T:0.56
Consensus pattern (13 bp):
TGAAATTTTTATA
Found at i:47131354 original size:70 final size:71
Alignment explanation
Indices: 47131240--47131376 Score: 240
Period size: 70 Copynumber: 1.9 Consensus size: 71
47131230 ATTCCTGAAC
* * *
47131240 ATTGTAATATTATATAAAGTGAAATTTTTATATGAAATTTTTATTATTTTCATTATTATTTATAT
1 ATTGTAATACTAGATAAAGTGAAATTTTTATATGAAATTATTATTATTTTCATTATTATTTATAT
47131305 GAAAAT
66 GAAAAT
47131311 ATTGTAATACTAGATAAAGTG-AATTTTTATATGAAATTATTATTATTTTCATTATTATTTATAT
1 ATTGTAATACTAGATAAAGTGAAATTTTTATATGAAATTATTATTATTTTCATTATTATTTATAT
47131375 GA
66 GA
47131377 TTTTTTTATT
Statistics
Matches: 63, Mismatches: 3, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
70 44 0.70
71 19 0.30
ACGTcount: A:0.39, C:0.02, G:0.08, T:0.51
Consensus pattern (71 bp):
ATTGTAATACTAGATAAAGTGAAATTTTTATATGAAATTATTATTATTTTCATTATTATTTATAT
GAAAAT
Found at i:47131374 original size:32 final size:32
Alignment explanation
Indices: 47131266--47131376 Score: 89
Period size: 32 Copynumber: 3.3 Consensus size: 32
47131256 AAGTGAAATT
*
47131266 TTTATATGAAATTTTTATTATTTTCATTATTA
1 TTTATATGAAATTATTATTATTTTCATTATTA
* ** ** *
47131298 TTTATATGAAAATATTGTAATACTAGATAAAGTGAATT-
1 TTTATATGAAATTA-T-T-AT--TATTTTCA-T-TATTA
47131336 TTTATATGAAATTATTATTATTTTCATTATTA
1 TTTATATGAAATTATTATTATTTTCATTATTA
47131368 TTTATATGA
1 TTTATATGA
47131377 TTTTTTTATT
Statistics
Matches: 58, Mismatches: 13, Indels: 16
0.67 0.15 0.18
Matches are distributed among these distances:
31 3 0.05
32 22 0.38
33 5 0.09
34 1 0.02
35 4 0.07
36 1 0.02
37 5 0.09
38 14 0.24
39 3 0.05
ACGTcount: A:0.37, C:0.03, G:0.07, T:0.53
Consensus pattern (32 bp):
TTTATATGAAATTATTATTATTTTCATTATTA
Found at i:47131394 original size:87 final size:89
Alignment explanation
Indices: 47131295--47131459 Score: 237
Period size: 89 Copynumber: 1.9 Consensus size: 89
47131285 ATTTTCATTA
* * *
47131295 TTATTTATATGAAAATATTGTAATACTAGATAAAG-T-GAATTTTTATATGAAATTATTAT-TAT
1 TTATTTATATGAAAATAATGTAAAACTAGATAAAGTTAAAATTTTTATATGAAATTATTATGT-T
47131357 TTTCATTATTATTTATATGATTTTT
65 TTTCATTATTATTTATATGATTTTT
* * * *
47131382 TTATTTTTATGAAAATAATGTAAAATTTGATAAAGTTAAAATTTTTATATGAAATTTTTATGTTT
1 TTATTTATATGAAAATAATGTAAAACTAGATAAAGTTAAAATTTTTATATGAAATTATTATGTTT
47131447 TTCATTATTATTT
66 TTCATTATTATTT
47131460 TTTATATAAA
Statistics
Matches: 68, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
87 30 0.44
88 1 0.01
89 36 0.53
90 1 0.01
ACGTcount: A:0.37, C:0.02, G:0.08, T:0.53
Consensus pattern (89 bp):
TTATTTATATGAAAATAATGTAAAACTAGATAAAGTTAAAATTTTTATATGAAATTATTATGTTT
TTCATTATTATTTATATGATTTTT
Found at i:47135454 original size:13 final size:13
Alignment explanation
Indices: 47135431--47135477 Score: 60
Period size: 13 Copynumber: 3.6 Consensus size: 13
47135421 TTTTATATTT
47135431 TTTATAATTTTAAA
1 TTTA-AATTTTAAA
47135445 TTTAAATTTTAAA
1 TTTAAATTTTAAA
*
47135458 TTT-AATGTTAAA
1 TTTAAATTTTAAA
*
47135470 TTAAAATT
1 TTTAAATT
47135478 AAATGAAATA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
12 10 0.34
13 15 0.52
14 4 0.14
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (13 bp):
TTTAAATTTTAAA
Found at i:47135482 original size:18 final size:19
Alignment explanation
Indices: 47135440--47135482 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 19
47135430 TTTTATAATT
*
47135440 TTAAAT-TTAAATTTTAAA
1 TTAAATGTTAAATTTAAAA
*
47135458 TTTAATGTTAAA-TTAAAA
1 TTAAATGTTAAATTTAAAA
47135476 TTAAATG
1 TTAAATG
47135483 AAATAAAGCA
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
18 16 0.76
19 5 0.24
ACGTcount: A:0.49, C:0.00, G:0.05, T:0.47
Consensus pattern (19 bp):
TTAAATGTTAAATTTAAAA
Found at i:47135587 original size:40 final size:40
Alignment explanation
Indices: 47135543--47135622 Score: 160
Period size: 40 Copynumber: 2.0 Consensus size: 40
47135533 TAAAGGAGAA
47135543 AGAGAAAATAATTGGACATTTCGATTTATAGTGGTCCGAT
1 AGAGAAAATAATTGGACATTTCGATTTATAGTGGTCCGAT
47135583 AGAGAAAATAATTGGACATTTCGATTTATAGTGGTCCGAT
1 AGAGAAAATAATTGGACATTTCGATTTATAGTGGTCCGAT
47135623 CCTAATTGCC
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.35, C:0.10, G:0.23, T:0.33
Consensus pattern (40 bp):
AGAGAAAATAATTGGACATTTCGATTTATAGTGGTCCGAT
Found at i:47136205 original size:22 final size:22
Alignment explanation
Indices: 47136157--47136215 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
47136147 AGACTTGGCA
* *
47136157 AATGTCTCGTGACATACAGACT
1 AATGTCTCGAGACATACAGACC
* * *
47136179 TATGTCTCGAGACATATAGGCC
1 AATGTCTCGAGACATACAGACC
*
47136201 AATGTCTCTAGACAT
1 AATGTCTCGAGACAT
47136216 GCAACCCTTG
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.31, C:0.22, G:0.19, T:0.29
Consensus pattern (22 bp):
AATGTCTCGAGACATACAGACC
Found at i:47136945 original size:20 final size:20
Alignment explanation
Indices: 47136873--47136947 Score: 73
Period size: 20 Copynumber: 3.6 Consensus size: 20
47136863 TCTTTATAAT
47136873 TTTTTTAAAATATAAATTTTGAA
1 TTTTTTAAAAT-T--ATTTTGAA
*
47136896 ATTTTTACAAA-TATTTTGAA
1 TTTTTTA-AAATTATTTTGAA
*
47136916 TTTTTGAAAATTATTTTG-A
1 TTTTTTAAAATTATTTTGAA
47136935 TTATTTTAAAATT
1 TT-TTTTAAAATT
47136948 TTTGTTGAGA
Statistics
Matches: 45, Mismatches: 4, Indels: 9
0.78 0.07 0.16
Matches are distributed among these distances:
19 6 0.13
20 29 0.64
22 1 0.02
23 6 0.13
24 3 0.07
ACGTcount: A:0.39, C:0.01, G:0.05, T:0.55
Consensus pattern (20 bp):
TTTTTTAAAATTATTTTGAA
Found at i:47148803 original size:21 final size:20
Alignment explanation
Indices: 47148770--47148808 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
47148760 AGTAATTTAA
*
47148770 TTTTTCTTCTTTTATATTAT
1 TTTTTCTTATTTTATATTAT
*
47148790 TTTTTCTTTATTTTTTATT
1 TTTTTC-TTATTTTATATT
47148809 CACTTCTACT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 6 0.38
21 10 0.62
ACGTcount: A:0.13, C:0.08, G:0.00, T:0.79
Consensus pattern (20 bp):
TTTTTCTTATTTTATATTAT
Done.