Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100714657
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 3970000 characters in sequence are not A, C, G, or T
File 160 of 318
Found at i:50496065 original size:79 final size:82
Alignment explanation
Indices: 50495954--50496138 Score: 238
Period size: 79 Copynumber: 2.3 Consensus size: 82
50495944 GCTACTCGTT
* *
50495954 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
50496017 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
50496034 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
50496097 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
50496114 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
50496139 CATCATTCAA
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 55 0.60
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:50496138 original size:40 final size:40
Alignment explanation
Indices: 50495935--50496138 Score: 238
Period size: 40 Copynumber: 5.1 Consensus size: 40
50495925 CGGAATTTAA
** *
50495935 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
50495975 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
50496015 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
50496054 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
50496094 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
50496134 CCGGA
1 CCGGA
50496139 CATCATTCAA
Statistics
Matches: 141, Mismatches: 16, Indels: 14
0.82 0.09 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.23
40 94 0.67
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:50500375 original size:47 final size:47
Alignment explanation
Indices: 50500322--50500804 Score: 822
Period size: 47 Copynumber: 10.2 Consensus size: 47
50500312 AATTCTAAAT
50500322 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
50500369 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
50500416 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
50500463 TGTGAATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 TGTG-ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
50500511 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
50500558 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
*
50500605 TGTGAATAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 TGTG-ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
*
50500653 TATGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATA
50500702 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
*** * * * * * * *
50500749 TGTGACGGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGCATAAA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
50500796 TGTGATAAG
1 TGTGATAAG
50500805 TCCCGAAGGG
Statistics
Matches: 415, Mismatches: 17, Indels: 8
0.94 0.04 0.02
Matches are distributed among these distances:
47 277 0.67
48 92 0.22
49 46 0.11
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
Found at i:50500514 original size:25 final size:25
Alignment explanation
Indices: 50500485--50500563 Score: 65
Period size: 25 Copynumber: 3.3 Consensus size: 25
50500475 CTAATGGCCG
50500485 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
* *** ****
50500510 ATGTGAT-AAGGCCTAA-TG-GCCG
1 ATGTGATGAATGTGAAAGTGTATAT
50500532 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
50500557 ATGTGAT
1 ATGTGAT
50500564 AAGGCCTAAT
Statistics
Matches: 35, Mismatches: 16, Indels: 6
0.61 0.28 0.11
Matches are distributed among these distances:
22 7 0.20
23 7 0.20
24 7 0.20
25 14 0.40
ACGTcount: A:0.33, C:0.05, G:0.29, T:0.33
Consensus pattern (25 bp):
ATGTGATGAATGTGAAAGTGTATAT
Found at i:50500519 original size:95 final size:94
Alignment explanation
Indices: 50500322--50500804 Score: 822
Period size: 95 Copynumber: 5.1 Consensus size: 94
50500312 AATTCTAAAT
50500322 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
50500387 CCGATGTGATGAATGTGAAAGTGTATATA
66 CCGATGTGATGAATGTGAAAGTGTATATA
50500416 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAATAAGGCCTAATG
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTG-ATAAGGCCTAATG
50500481 GCCGATGTGATGAATGTGAAAGTGTATATA
65 GCCGATGTGATGAATGTGAAAGTGTATATA
50500511 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
50500576 CCGATGTGATGAATGTGAAAGTGTATATA
66 CCGATGTGATGAATGTGAAAGTGTATATA
* *
50500605 TGTGAATAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGATAAGGCCTAATG
1 TGTG-ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATG
50500670 GCCGATGTGATGAATGTGAAAGTGTATATATA
65 GCCGATGTGATGAATGTGAAAGTG--TATATA
*** * *
50500702 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACGGGGCCGAGTGG
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
* * * * *
50500767 CCAACGTGATGGATGTGAAAGTGCATAAA
66 CCGATGTGATGAATGTGAAAGTGTATATA
50500796 TGTGATAAG
1 TGTGATAAG
50500805 TCCCGAAGGG
Statistics
Matches: 371, Mismatches: 14, Indels: 8
0.94 0.04 0.02
Matches are distributed among these distances:
94 111 0.30
95 176 0.47
96 74 0.20
97 10 0.03
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (94 bp):
TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
CCGATGTGATGAATGTGAAAGTGTATATA
Found at i:50500582 original size:142 final size:141
Alignment explanation
Indices: 50500322--50500804 Score: 822
Period size: 142 Copynumber: 3.4 Consensus size: 141
50500312 AATTCTAAAT
50500322 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
50500387 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
66 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
50500452 AAGTGTATATA
131 AAGTGTATATA
50500463 TGTGAATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATG
1 TGTG-ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATG
50500528 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
65 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
50500593 AAAGTGTATATA
130 AAAGTGTATATA
* *
50500605 TGTGAATAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGATAAGGCCTAATG
1 TGTG-ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATG
50500670 GCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
65 GCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
50500735 TGAAAGTGTATATA
128 TGAAAGTGTATATA
*** * * * * * * *
50500749 TGTGACGGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGCATAAATGTGATAAG
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
50500805 TCCCGAAGGG
Statistics
Matches: 327, Mismatches: 12, Indels: 4
0.95 0.03 0.01
Matches are distributed among these distances:
141 4 0.01
142 224 0.69
143 42 0.13
144 57 0.17
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (141 bp):
TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
AAGTGTATATA
Found at i:50500980 original size:38 final size:37
Alignment explanation
Indices: 50500923--50501001 Score: 106
Period size: 38 Copynumber: 2.1 Consensus size: 37
50500913 CTGAGCTCTA
* *
50500923 AAGACCCGATGACTACGTGTGG-GAATTTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-A-TTATGTCCGGGT
*
50500961 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
50500998 AAGA
1 AAGA
50501002 TTTCGTAATA
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
37 15 0.41
38 21 0.57
39 1 0.03
ACGTcount: A:0.25, C:0.18, G:0.30, T:0.27
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:50503228 original size:28 final size:28
Alignment explanation
Indices: 50503165--50503313 Score: 230
Period size: 28 Copynumber: 5.4 Consensus size: 28
50503155 ATATTAAGTC
* *
50503165 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTACATAATCAAACT
50503192 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
50503220 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
50503248 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
** * *
50503276 CGCACACTTAGTGCTGTACAATTAAAC-
1 CGCACACTTAGTGCTACATAATCAAACT
50503303 CGCACACTTAG
1 CGCACACTTAG
50503314 CGATCATAAA
Statistics
Matches: 115, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
27 32 0.28
28 83 0.72
ACGTcount: A:0.34, C:0.29, G:0.12, T:0.25
Consensus pattern (28 bp):
CGCACACTTAGTGCTACATAATCAAACT
Found at i:50511465 original size:28 final size:28
Alignment explanation
Indices: 50511402--50511499 Score: 119
Period size: 27 Copynumber: 3.5 Consensus size: 28
50511392 ATATTAAGTC
*
50511402 CGCACACTCAGTGCTATAAAATC-AACT
1 CGCACACTTAGTGCTATAAAATCAAACT
*
50511429 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATAAAATCAAACT
* * *
50511457 CGCACACTTAGTGCTGA-ACAATTTAAACC
1 CGCACACTTAGTGCT-ATA-AAATCAAACT
50511486 CGCACACTTAGTGC
1 CGCACACTTAGTGC
50511500 CAATCTCATG
Statistics
Matches: 62, Mismatches: 6, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
27 21 0.34
28 20 0.32
29 21 0.34
ACGTcount: A:0.34, C:0.29, G:0.13, T:0.24
Consensus pattern (28 bp):
CGCACACTTAGTGCTATAAAATCAAACT
Found at i:50511494 original size:29 final size:28
Alignment explanation
Indices: 50511401--50511499 Score: 112
Period size: 28 Copynumber: 3.5 Consensus size: 28
50511391 TATATTAAGT
* *
50511401 CCGCACACTCAGTGCTATAAAATC-AAC
1 CCGCACACTTAGTGCTATACAATCAAAC
* *
50511428 TCGCACACTTAGTGCTATATAATCAAAC
1 CCGCACACTTAGTGCTATACAATCAAAC
* *
50511456 TCGCACACTTAGTGCTGA-ACAATTTAAAC
1 CCGCACACTTAGTGCT-ATACAA-TCAAAC
50511485 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
50511500 CAATCTCATG
Statistics
Matches: 63, Mismatches: 6, Indels: 4
0.86 0.08 0.05
Matches are distributed among these distances:
27 21 0.33
28 22 0.35
29 20 0.32
ACGTcount: A:0.33, C:0.29, G:0.13, T:0.24
Consensus pattern (28 bp):
CCGCACACTTAGTGCTATACAATCAAAC
Found at i:50519560 original size:27 final size:28
Alignment explanation
Indices: 50519530--50519632 Score: 122
Period size: 28 Copynumber: 3.7 Consensus size: 28
50519520 ATATTAAGTC
* *
50519530 CGCACACTCAGTGCTATAAAATC-AACT
1 CGCACACTTAGTGCTACAAAATCAAACT
*
50519557 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACAAAATCAAACT
*
50519585 CGCACACTTAGTG-T-CGAACATTCAAACCT
1 CGCACACTTAGTGCTAC-AA-AATCAAA-CT
50519614 CGCACACTTAGTGCTACAA
1 CGCACACTTAGTGCTACAA
50519633 TCAATCCCAC
Statistics
Matches: 65, Mismatches: 5, Indels: 9
0.82 0.06 0.11
Matches are distributed among these distances:
26 1 0.02
27 22 0.34
28 23 0.35
29 15 0.23
30 3 0.05
31 1 0.02
ACGTcount: A:0.34, C:0.30, G:0.13, T:0.23
Consensus pattern (28 bp):
CGCACACTTAGTGCTACAAAATCAAACT
Found at i:50519593 original size:28 final size:28
Alignment explanation
Indices: 50519530--50519631 Score: 120
Period size: 27 Copynumber: 3.6 Consensus size: 28
50519520 ATATTAAGTC
* * *
50519530 CGCACACTCAGTGCTATAAAATC-AACT
1 CGCACACTTAGTGCTACATAATCAAACT
50519557 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
*
50519585 CGCACACTTAGTGTCGAACAT--TCAAACCT
1 CGCACACTTAGTG-C-TACATAATCAAA-CT
50519614 CGCACACTTAGTGCTACA
1 CGCACACTTAGTGCTACA
50519632 ATCAATCCCA
Statistics
Matches: 66, Mismatches: 5, Indels: 8
0.84 0.06 0.10
Matches are distributed among these distances:
27 23 0.35
28 23 0.35
29 16 0.24
30 4 0.06
ACGTcount: A:0.33, C:0.30, G:0.13, T:0.24
Consensus pattern (28 bp):
CGCACACTTAGTGCTACATAATCAAACT
Found at i:50532818 original size:174 final size:174
Alignment explanation
Indices: 50532528--50532853 Score: 492
Period size: 174 Copynumber: 1.9 Consensus size: 174
50532518 TGGAGTTGCT
* **
50532528 CTTAAATCCACCACAAATGAAGATAGTGAATCAACCAAAGATGTGGATGAAGAAAAAGAGATGTT
1 CTTAAATCCACCACAAATGAAGATAGTGAATCAACCAAAGAGGTGGATGAAGAAAAAGAGATGAC
* * **
50532593 CATGTTTGCTAGGAGATTCAAGAGATTCATGACCTTTAATAGAGGAAGAAGATTCCAAAAGAAGG
66 CATGTTTACTAGGAGATTCAAGAGATTCATGAACTCCAATAGAGGAAGAAGATTCCAAAAGAAGG
50532658 AGGGGTTAAAGCTTGAATCTACTAAGAAGAATGAGGGGTTAAAG
131 AGGGGTTAAAGCTTGAATCTACTAAGAAGAATGAGGGGTTAAAG
* * * *
50532702 CTTAAATCTACCACAAATGAAGATAGTTAATCAAGCGAAGAGGTGGATGAA-AACAAAGAGATGA
1 CTTAAATCCACCACAAATGAAGATAGTGAATCAACCAAAGAGGTGGATGAAGAA-AAAGAGATGA
* * * * *
50532766 CCATGTTTATTAGGAGATTGAAGAGATTCCTGAAGTCCAATAGAGGAAGAAGATTCCAAAAGAAT
65 CCATGTTTACTAGGAGATTCAAGAGATTCATGAACTCCAATAGAGGAAGAAGATTCCAAAAGAAG
50532831 GAGGGGTTAAAGCTTGAATCTAC
130 GAGGGGTTAAAGCTTGAATCTAC
50532854 CAAGGGGAAG
Statistics
Matches: 135, Mismatches: 16, Indels: 2
0.88 0.10 0.01
Matches are distributed among these distances:
173 2 0.01
174 133 0.99
ACGTcount: A:0.41, C:0.12, G:0.24, T:0.22
Consensus pattern (174 bp):
CTTAAATCCACCACAAATGAAGATAGTGAATCAACCAAAGAGGTGGATGAAGAAAAAGAGATGAC
CATGTTTACTAGGAGATTCAAGAGATTCATGAACTCCAATAGAGGAAGAAGATTCCAAAAGAAGG
AGGGGTTAAAGCTTGAATCTACTAAGAAGAATGAGGGGTTAAAG
Found at i:50535055 original size:28 final size:28
Alignment explanation
Indices: 50534992--50535089 Score: 119
Period size: 27 Copynumber: 3.5 Consensus size: 28
50534982 ATATTAAGTC
*
50534992 CGCACACTCAGTGCTATAAAATC-AACT
1 CGCACACTTAGTGCTATAAAATCAAACT
*
50535019 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATAAAATCAAACT
* * *
50535047 CGCACACTTAGTGCTGA-ACAATTTAAACC
1 CGCACACTTAGTGCT-ATA-AAATCAAACT
50535076 CGCACACTTAGTGC
1 CGCACACTTAGTGC
50535090 CAATCTCATG
Statistics
Matches: 62, Mismatches: 6, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
27 21 0.34
28 20 0.32
29 21 0.34
ACGTcount: A:0.34, C:0.29, G:0.13, T:0.24
Consensus pattern (28 bp):
CGCACACTTAGTGCTATAAAATCAAACT
Found at i:50535084 original size:29 final size:28
Alignment explanation
Indices: 50534991--50535089 Score: 112
Period size: 28 Copynumber: 3.5 Consensus size: 28
50534981 TATATTAAGT
* *
50534991 CCGCACACTCAGTGCTATAAAATC-AAC
1 CCGCACACTTAGTGCTATACAATCAAAC
* *
50535018 TCGCACACTTAGTGCTATATAATCAAAC
1 CCGCACACTTAGTGCTATACAATCAAAC
* *
50535046 TCGCACACTTAGTGCTGA-ACAATTTAAAC
1 CCGCACACTTAGTGCT-ATACAA-TCAAAC
50535075 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
50535090 CAATCTCATG
Statistics
Matches: 63, Mismatches: 6, Indels: 4
0.86 0.08 0.05
Matches are distributed among these distances:
27 21 0.33
28 22 0.35
29 20 0.32
ACGTcount: A:0.33, C:0.29, G:0.13, T:0.24
Consensus pattern (28 bp):
CCGCACACTTAGTGCTATACAATCAAAC
Found at i:50543286 original size:26 final size:27
Alignment explanation
Indices: 50543247--50543328 Score: 134
Period size: 25 Copynumber: 3.1 Consensus size: 27
50543237 ATATCAATGC
50543247 ACATAATCAAACTCGCACACTTAGTGCT
1 ACAT-ATCAAACTCGCACACTTAGTGCT
50543275 ACATATC-AACTCGCACACTTA-TGCT
1 ACATATCAAACTCGCACACTTAGTGCT
50543300 ACA-ATCAAACTCGCACACTTAGTGCT
1 ACATATCAAACTCGCACACTTAGTGCT
50543326 ACA
1 ACA
50543329 ATACTCCATG
Statistics
Matches: 52, Mismatches: 0, Indels: 6
0.90 0.00 0.10
Matches are distributed among these distances:
24 3 0.06
25 21 0.40
26 21 0.40
27 3 0.06
28 4 0.08
ACGTcount: A:0.35, C:0.30, G:0.10, T:0.24
Consensus pattern (27 bp):
ACATATCAAACTCGCACACTTAGTGCT
Found at i:50543310 original size:25 final size:26
Alignment explanation
Indices: 50543251--50543330 Score: 137
Period size: 26 Copynumber: 3.1 Consensus size: 26
50543241 CAATGCACAT
50543251 AATCAAACTCGCACACTTAGTGCTAC
1 AATCAAACTCGCACACTTAGTGCTAC
50543277 ATATC-AACTCGCACACTTA-TGCTAC
1 A-ATCAAACTCGCACACTTAGTGCTAC
50543302 AATCAAACTCGCACACTTAGTGCTAC
1 AATCAAACTCGCACACTTAGTGCTAC
50543328 AAT
1 AAT
50543331 ACTCCATGAT
Statistics
Matches: 51, Mismatches: 0, Indels: 6
0.89 0.00 0.11
Matches are distributed among these distances:
24 3 0.06
25 21 0.41
26 24 0.47
27 3 0.06
ACGTcount: A:0.35, C:0.30, G:0.10, T:0.25
Consensus pattern (26 bp):
AATCAAACTCGCACACTTAGTGCTAC
Found at i:50551513 original size:28 final size:28
Alignment explanation
Indices: 50551450--50551631 Score: 321
Period size: 28 Copynumber: 6.5 Consensus size: 28
50551440 ATATTAAGTC
* *
50551450 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTACATAATCAAACT
*
50551477 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
50551505 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
50551533 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
50551561 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
*
50551589 CGCACACTTAGTGCTACAAAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
50551617 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
50551632 GTACAATTTA
Statistics
Matches: 151, Mismatches: 3, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
27 22 0.15
28 129 0.85
ACGTcount: A:0.35, C:0.29, G:0.12, T:0.25
Consensus pattern (28 bp):
CGCACACTTAGTGCTACATAATCAAACT
Found at i:50552383 original size:2 final size:2
Alignment explanation
Indices: 50552376--50552406 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
50552366 ATGGGCTTAC
*
50552376 AT AT AT AT GT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
50552407 GCCGAATATG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.48
Consensus pattern (2 bp):
AT
Found at i:50560046 original size:22 final size:21
Alignment explanation
Indices: 50560018--50560086 Score: 75
Period size: 22 Copynumber: 3.1 Consensus size: 21
50560008 TCTTTGATTA
50560018 TTAGCACATTAGTGCTATCTGT
1 TTAGCACATT-GTGCTATCTGT
50560040 TTAGCACATCTGTGCTATCTGT
1 TTAGCACAT-TGTGCTATCTGT
* * * *
50560062 ATAACACTTTTGTGCTCTCTGT
1 TTAGCAC-ATTGTGCTATCTGT
50560084 TTA
1 TTA
50560087 ATAGTGCATA
Statistics
Matches: 40, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
22 38 0.95
23 2 0.05
ACGTcount: A:0.20, C:0.20, G:0.16, T:0.43
Consensus pattern (21 bp):
TTAGCACATTGTGCTATCTGT
Found at i:50565984 original size:34 final size:34
Alignment explanation
Indices: 50565953--50566018 Score: 89
Period size: 34 Copynumber: 1.9 Consensus size: 34
50565943 GTTTCAGTTA
50565953 GGGCCTTAACCC-ATTACAGTAACAGTATCAGTGT
1 GGGCCTTAACCCAATT-CAGTAACAGTATCAGTGT
* * *
50565987 GGGCCTTAGCCCAATTCAGTGACAGTAACAGT
1 GGGCCTTAACCCAATTCAGTAACAGTATCAGT
50566019 ATATATATGC
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
34 25 0.89
35 3 0.11
ACGTcount: A:0.29, C:0.24, G:0.23, T:0.24
Consensus pattern (34 bp):
GGGCCTTAACCCAATTCAGTAACAGTATCAGTGT
Found at i:50567250 original size:17 final size:18
Alignment explanation
Indices: 50567230--50567266 Score: 58
Period size: 17 Copynumber: 2.1 Consensus size: 18
50567220 AAGAAAGCTG
*
50567230 AAAGAGTAGAG-AGGGAA
1 AAAGAGCAGAGAAGGGAA
50567247 AAAGAGCAGAGAAGGGAA
1 AAAGAGCAGAGAAGGGAA
50567265 AA
1 AA
50567267 GAAGGTATTC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 10 0.56
18 8 0.44
ACGTcount: A:0.57, C:0.03, G:0.38, T:0.03
Consensus pattern (18 bp):
AAAGAGCAGAGAAGGGAA
Found at i:50572849 original size:40 final size:40
Alignment explanation
Indices: 50572804--50573148 Score: 557
Period size: 40 Copynumber: 8.6 Consensus size: 40
50572794 CAAGCTCAAT
* * * * *
50572804 TGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCACGAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
*
50572844 TGCCTTCGGGTCTTAGCCCGGATATATCAACTT-GCACAAT
1 TGCCTTCGGGTCTTAGCCCGGATATATCAA-TTCGCACAAA
50572884 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
* * *
50572924 CGCCGTCGGGTCTTAGCCCGGATATATCAGTTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
*
50572964 TGCCTTCGGGTCTTATCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
*
50573004 TGCCTTCGGGTCTTATCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
50573044 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
*
50573084 TGCCTTCGGGTCTTAACCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
*
50573124 TACCTTCGGGTCTTAGCCCGGATAT
1 TGCCTTCGGGTCTTAGCCCGGATAT
50573149 CATTCAAATG
Statistics
Matches: 285, Mismatches: 18, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
39 2 0.01
40 282 0.99
41 1 0.00
ACGTcount: A:0.24, C:0.28, G:0.21, T:0.28
Consensus pattern (40 bp):
TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
Found at i:50580338 original size:40 final size:40
Alignment explanation
Indices: 50580293--50580717 Score: 697
Period size: 40 Copynumber: 10.6 Consensus size: 40
50580283 CAAGCTCAAT
* * * * *
50580293 TGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCACGAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
* * *
50580333 TGCCTTCGGGTCTTAGCCTGGATATATCAATTTGCACAAT
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
50580373 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
* ** *
50580413 CGCAGTCGGGTCTTAGCCCGGATATATCAGTTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
*
50580453 TGCCTTCGGGTCTTATCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
*
50580493 TGCCTTCGGGTCTTATCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
*
50580533 TGCCTTCGGGTCTTATCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
50580573 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
* *
50580613 TGCCTTCGGGTCTTAACCCGGATATATCAATTCGCACTAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
50580653 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
50580693 TGCCTTCGGGTCTTAGCCCGGATAT
1 TGCCTTCGGGTCTTAGCCCGGATAT
50580718 CATTCAAATG
Statistics
Matches: 360, Mismatches: 25, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 360 1.00
ACGTcount: A:0.24, C:0.27, G:0.20, T:0.28
Consensus pattern (40 bp):
TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
Found at i:50586205 original size:17 final size:18
Alignment explanation
Indices: 50586185--50586221 Score: 58
Period size: 17 Copynumber: 2.1 Consensus size: 18
50586175 AAGAAAGCCG
*
50586185 AAAGAGTAGAG-AGGGAA
1 AAAGAGCAGAGAAGGGAA
50586202 AAAGAGCAGAGAAGGGAA
1 AAAGAGCAGAGAAGGGAA
50586220 AA
1 AA
50586222 GAAGGTATTC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 10 0.56
18 8 0.44
ACGTcount: A:0.57, C:0.03, G:0.38, T:0.03
Consensus pattern (18 bp):
AAAGAGCAGAGAAGGGAA
Found at i:50590334 original size:45 final size:46
Alignment explanation
Indices: 50590269--50590361 Score: 118
Period size: 45 Copynumber: 2.0 Consensus size: 46
50590259 TGAAATATGA
* * *
50590269 TATTGAGATAGTTTCGGC-TATGTATTGGCACTTCA-GTGCAAGATT
1 TATTGAGATAGCTTCAGCATATATATTGGCACTT-AGGTGCAAGATT
50590314 TATTGAGATAGCTTCAGCTATATATATTGGCACTTAGGGTGCAAGATT
1 TATTGAGATAGCTTCAGC-ATATATATTGGCACTTA-GGTGCAAGATT
50590362 CTCGAGTATC
Statistics
Matches: 41, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
45 16 0.39
46 1 0.02
47 14 0.34
48 10 0.24
ACGTcount: A:0.27, C:0.13, G:0.24, T:0.37
Consensus pattern (46 bp):
TATTGAGATAGCTTCAGCATATATATTGGCACTTAGGTGCAAGATT
Found at i:50596813 original size:47 final size:47
Alignment explanation
Indices: 50596705--50596832 Score: 177
Period size: 47 Copynumber: 2.7 Consensus size: 47
50596695 GAATGATACA
* * *
50596705 TTGATTTGGCTACGGGCCATGATATAGGTATTTCAGAAAGGAGTTACC
1 TTGATTTGGCTACAGGCCATGGTATAGGTACTTCAGAAA-GAGTTACC
* *
50596753 TTGATTTGGCTACAGGCCATGGTATAGGTACTTCGGGATA-AGTTACC
1 TTGATTTGGCTACAGGCCATGGTATAGGTACTTC-AGAAAGAGTTACC
*
50596800 TTGATTTTGCTACAGGCCATGGTATAGGTACTT
1 TTGATTTGGCTACAGGCCATGGTATAGGTACTT
50596833 ATCGATTGTG
Statistics
Matches: 73, Mismatches: 6, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
47 39 0.53
48 31 0.42
49 3 0.04
ACGTcount: A:0.24, C:0.16, G:0.27, T:0.34
Consensus pattern (47 bp):
TTGATTTGGCTACAGGCCATGGTATAGGTACTTCAGAAAGAGTTACC
Found at i:50599106 original size:24 final size:26
Alignment explanation
Indices: 50599074--50599124 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 26
50599064 AATCACAAAC
* *
50599074 AAATCAGTCA-TTTACCTTCGAGGGT
1 AAATCAGTCATTTTACCCTAGAGGGT
50599099 AAAT-AGTCATTTTACCCTAGAGGGT
1 AAATCAGTCATTTTACCCTAGAGGGT
50599124 A
1 A
50599125 TTTTGGTATT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
24 5 0.22
25 18 0.78
ACGTcount: A:0.31, C:0.18, G:0.20, T:0.31
Consensus pattern (26 bp):
AAATCAGTCATTTTACCCTAGAGGGT
Found at i:50601608 original size:32 final size:32
Alignment explanation
Indices: 50601546--50601609 Score: 83
Period size: 32 Copynumber: 2.0 Consensus size: 32
50601536 CCCATTACAG
* *
50601546 TATCAATTGGGCCTAGCCTATCTGAAAATCAA
1 TATCAATTGGGCCTAGCCCATATGAAAATCAA
* * *
50601578 TATCAGTTGGGCCTAGCCCATATTAGAATCAA
1 TATCAATTGGGCCTAGCCCATATGAAAATCAA
50601610 ACCCATATGA
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
32 27 1.00
ACGTcount: A:0.33, C:0.22, G:0.17, T:0.28
Consensus pattern (32 bp):
TATCAATTGGGCCTAGCCCATATGAAAATCAA
Found at i:50603564 original size:56 final size:56
Alignment explanation
Indices: 50603473--50603595 Score: 176
Period size: 55 Copynumber: 2.2 Consensus size: 56
50603463 GAGATTGGCG
* * *
50603473 CTAAGTGTGCGGGTTTAAATTGTACAGCACTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTAAATTATACAGCACTAAGTGTGCGAG-TTGATTATATAGCA
* *
50603530 CTAAGTGTGCGAGTTT-GATTATATAGCACTAAGTGTGCGAGTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTAAATTATACAGCACTAAGTGTGCGAGTTGATTATATAGCA
*
50603585 CTGAGTGTGCG
1 CTAAGTGTGCG
50603596 GACTTAATAT
Statistics
Matches: 60, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
55 23 0.38
56 22 0.37
57 15 0.25
ACGTcount: A:0.26, C:0.12, G:0.28, T:0.33
Consensus pattern (56 bp):
CTAAGTGTGCGAGTTTAAATTATACAGCACTAAGTGTGCGAGTTGATTATATAGCA
Found at i:50603582 original size:27 final size:28
Alignment explanation
Indices: 50603473--50603595 Score: 176
Period size: 28 Copynumber: 4.4 Consensus size: 28
50603463 GAGATTGGCG
* * * *
50603473 CTAAGTGTGCGGGTTTAAATTGTACAGCA
1 CTAAGTGTGCGAGTTT-GATTATATAGCA
*
50603502 CTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
50603530 CTAAGTGTGCGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
50603558 CTAAGTGTGCGAG-TTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
50603585 CTGAGTGTGCG
1 CTAAGTGTGCG
50603596 GACTTAATAT
Statistics
Matches: 87, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
27 24 0.28
28 48 0.55
29 15 0.17
ACGTcount: A:0.26, C:0.12, G:0.28, T:0.33
Consensus pattern (28 bp):
CTAAGTGTGCGAGTTTGATTATATAGCA
Found at i:50603606 original size:27 final size:27
Alignment explanation
Indices: 50603498--50603608 Score: 116
Period size: 28 Copynumber: 4.0 Consensus size: 27
50603488 TAAATTGTAC
* * *
50603498 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
50603526 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
50603554 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGAATATAT
*
50603581 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-GACTTGAATATAT
50603608 A
1 A
50603609 CTTTTGAATC
Statistics
Matches: 77, Mismatches: 5, Indels: 3
0.91 0.06 0.04
Matches are distributed among these distances:
27 30 0.39
28 47 0.61
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGAATATAT
Found at i:50610221 original size:47 final size:48
Alignment explanation
Indices: 50610167--50610297 Score: 149
Period size: 47 Copynumber: 2.8 Consensus size: 48
50610157 CACAATCGAT
*
50610167 AAGTACCTATACCATGACTCGTAGCCAAATCAAGGTAACTTATC-CCG
1 AAGTACCTATACCATGACTCGTAGCCAAATCAAGGTAACTCATCTCCG
* * * * **
50610214 GAGTACCTATACTATGA-TTGTAGCCAAATCAAGGTAACTCCTCTTTG
1 AAGTACCTATACCATGACTCGTAGCCAAATCAAGGTAACTCATCTCCG
* * * *
50610261 AAATACCTATACCATGGCCCATAGCCAAATCAAGGTA
1 AAGTACCTATACCATGACTCGTAGCCAAATCAAGGTA
50610298 TCATTTTCAC
Statistics
Matches: 68, Mismatches: 14, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
46 23 0.34
47 29 0.43
48 16 0.24
ACGTcount: A:0.34, C:0.25, G:0.15, T:0.25
Consensus pattern (48 bp):
AAGTACCTATACCATGACTCGTAGCCAAATCAAGGTAACTCATCTCCG
Found at i:50612012 original size:30 final size:30
Alignment explanation
Indices: 50611978--50612035 Score: 98
Period size: 30 Copynumber: 1.9 Consensus size: 30
50611968 TTTTCGGGCA
* *
50611978 TAGGGGTAAAATGGTCATTTTGCCAAAGTC
1 TAGGGGCAAAATGGTCATTTTACCAAAGTC
50612008 TAGGGGCAAAATGGTCATTTTACCAAAG
1 TAGGGGCAAAATGGTCATTTTACCAAAG
50612036 ATGTAAATTT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.33, C:0.14, G:0.26, T:0.28
Consensus pattern (30 bp):
TAGGGGCAAAATGGTCATTTTACCAAAGTC
Found at i:50612532 original size:47 final size:46
Alignment explanation
Indices: 50612378--50612738 Score: 222
Period size: 47 Copynumber: 7.7 Consensus size: 46
50612368 TTTGTGCGCT
* * *
50612378 AGTGTAAGACATGTCTGGGACATGCTTCAGCCACATTA-CTAGAGT--C
1 AGTGTAAGACATGTCTGGGACATGCATCAG-CACA-AAGAT-GAGTGCC
* * * ** * *
50612424 AGTGTAAGACCATGTCTGAGACATGATATCAGCATC-CAGACAAGGGCT
1 AGTGTAAGA-CATGTCTGGGACATG-CATCAGCA-CAAAGATGAGTGCC
* * **
50612472 AGTGTAAGACATGTCTTGGACATGCATTAGC-CATACTATGA-TAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCACA-AAGATGAGT-GCC
*
50612518 AGTGTAAGACCATGTCTGGGACATGGCATCGGCACAAAGATGAGTGCC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCAGCACAAAGATGAGTGCC
* * *
50612566 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGACAGA-GA-TAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAG-CAC-AAAGATGAGT-GCC
* * * * *
50612613 AGTGTAAGACGTGTCTGGGACACGCATC-GC-CTAAGA-GTTGTGCT
1 AGTGTAAGACATGTCTGGGACATGCATCAGCACAAAGATG-AGTGCC
** * *
50612657 AGTGTAAGACATGTCTGGGACATGCATCAGCACGGGTATATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCAC--AAAGATGAGTGCC
* *
50612705 AGTGTAAGTCCATGTTTGGGACATGACATCAGCA
1 AGTGTAAG-ACATGTCTGGGACATG-CATCAGCA
50612739 ATATATCCCA
Statistics
Matches: 247, Mismatches: 43, Indels: 46
0.74 0.13 0.14
Matches are distributed among these distances:
43 4 0.02
44 30 0.12
45 4 0.02
46 40 0.16
47 89 0.36
48 54 0.22
49 18 0.07
50 8 0.03
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.23
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGCACAAAGATGAGTGCC
Found at i:50612541 original size:94 final size:95
Alignment explanation
Indices: 50612375--50612738 Score: 345
Period size: 94 Copynumber: 3.9 Consensus size: 95
50612365 TGATTTGTGC
* * * *
50612375 GCTAGTGTAAGACATGTCTGGGACATGCTTCAGCCACATTACT-AGAGTCAGTGTAAGACCATGT
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCATACTACTGAGAGCCAGTGTAAGACCATGT
* * * *
50612439 CTGAGACATGATATCAGCATCCAGACAAGG
66 CTGGGACATGACATCAGCATCAAGACAAGT
* * *
50612469 GCTAGTGTAAGACATGTCTTGGACATGCATTAGCCATACTA-TGATAGCCAGTGTAAGACCATGT
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCATACTACTGAGAGCCAGTGTAAGACCATGT
* * **
50612533 CTGGGACATGGCATCGGCA-CAAAGATGAGT
66 CTGGGACATGACATCAGCATC-AAGACAAGT
* * * * *
50612563 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCC-T-CGACAGAGATAGCCAGTGTAAGA-CGT
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCATACTACTGAG--AGCCAGTGTAAGACCAT
* * ***
50612625 GTCTGGGACACG-CATC-GCCT-AAGAGTTGT
64 GTCTGGGACATGACATCAGCATCAAGACAAGT
* *
50612654 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCACGGGTA-TA-TGAGAGCCAGTGTAAGTCCA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAGC-C--ATACTACTGAGAGCCAGTGTAAGACCA
*
50612717 TGTTTGGGACATGACATCAGCA
63 TGTCTGGGACATGACATCAGCA
50612739 ATATATCCCA
Statistics
Matches: 219, Mismatches: 37, Indels: 27
0.77 0.13 0.10
Matches are distributed among these distances:
91 38 0.17
92 17 0.08
93 21 0.10
94 126 0.58
95 17 0.08
ACGTcount: A:0.29, C:0.21, G:0.28, T:0.23
Consensus pattern (95 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCATACTACTGAGAGCCAGTGTAAGACCATGT
CTGGGACATGACATCAGCATCAAGACAAGT
Found at i:50633869 original size:23 final size:23
Alignment explanation
Indices: 50633839--50633883 Score: 81
Period size: 23 Copynumber: 2.0 Consensus size: 23
50633829 TGGCTTCATA
*
50633839 CGGTGGCTTCATGCGCTAACATG
1 CGGTGGCTTCATACGCTAACATG
50633862 CGGTGGCTTCATACGCTAACAT
1 CGGTGGCTTCATACGCTAACAT
50633884 CTTTGAGTGT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.20, C:0.27, G:0.27, T:0.27
Consensus pattern (23 bp):
CGGTGGCTTCATACGCTAACATG
Found at i:50634866 original size:27 final size:27
Alignment explanation
Indices: 50634844--50634941 Score: 126
Period size: 27 Copynumber: 3.7 Consensus size: 27
50634834 AAAATTATTA
50634844 AAATACCCTTGTAGGGTAGAATTACTG
1 AAATACCCTTGTAGGGTAGAATTACTG
* * *
50634871 AAATATCCTTGTAGGGTAGAAATACCG
1 AAATACCCTTGTAGGGTAGAATTACTG
* *
50634898 AAATACCC-TATAGGGTAGAATTACCG
1 AAATACCCTTGTAGGGTAGAATTACTG
* *
50634924 AGATACCCTTGTGGGGTA
1 AAATACCCTTGTAGGGTA
50634942 AAAATTACCA
Statistics
Matches: 61, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
26 23 0.38
27 38 0.62
ACGTcount: A:0.34, C:0.16, G:0.23, T:0.27
Consensus pattern (27 bp):
AAATACCCTTGTAGGGTAGAATTACTG
Found at i:50634934 original size:53 final size:54
Alignment explanation
Indices: 50634844--50634946 Score: 145
Period size: 53 Copynumber: 1.9 Consensus size: 54
50634834 AAAATTATTA
* * * *
50634844 AAATACCCTTGTAGGGTAGAATTACTGAAATATCCTTGTAGGGTAGAAATACCG
1 AAATACCCTTATAGGGTAGAATTACCGAAATACCCTTGTAGGGTAAAAATACCG
* *
50634898 AAATACCC-TATAGGGTAGAATTACCGAGATACCCTTGTGGGGTAAAAAT
1 AAATACCCTTATAGGGTAGAATTACCGAAATACCCTTGTAGGGTAAAAAT
50634947 TACCATTTTG
Statistics
Matches: 43, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
53 35 0.81
54 8 0.19
ACGTcount: A:0.36, C:0.16, G:0.22, T:0.26
Consensus pattern (54 bp):
AAATACCCTTATAGGGTAGAATTACCGAAATACCCTTGTAGGGTAAAAATACCG
Found at i:50635738 original size:6 final size:6
Alignment explanation
Indices: 50635729--50635853 Score: 96
Period size: 6 Copynumber: 20.3 Consensus size: 6
50635719 TTGCATTCAC
* * *
50635729 ATTCTG ATTCTG ATTCTG -TTACCTG ATACTG ATTCTG ATTCTG -TCACCTA
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG AT--TCTG
* *
50635779 ATTCTG ATTCTG ATTCTG ATTCTA ATTCTG -TCACCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG
* *
50635828 ATTCTC ATTTTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG ATTCTG A-TTCTG AT
50635854 AATGTTTCTT
Statistics
Matches: 94, Mismatches: 14, Indels: 22
0.72 0.11 0.17
Matches are distributed among these distances:
5 5 0.05
6 77 0.82
7 9 0.10
8 3 0.03
ACGTcount: A:0.19, C:0.20, G:0.14, T:0.47
Consensus pattern (6 bp):
ATTCTG
Found at i:50635760 original size:25 final size:25
Alignment explanation
Indices: 50635732--50635796 Score: 103
Period size: 25 Copynumber: 2.6 Consensus size: 25
50635722 CATTCACATT
* *
50635732 CTGATTCTGATTCTGTTACCTGATA
1 CTGATTCTGATTCTGTCACCTAATA
*
50635757 CTGATTCTGATTCTGTCACCTAATT
1 CTGATTCTGATTCTGTCACCTAATA
50635782 CTGATTCTGATTCTG
1 CTGATTCTGATTCTG
50635797 ATTCTAATTC
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
25 37 1.00
ACGTcount: A:0.18, C:0.22, G:0.15, T:0.45
Consensus pattern (25 bp):
CTGATTCTGATTCTGTCACCTAATA
Found at i:50635764 original size:31 final size:31
Alignment explanation
Indices: 50635729--50635832 Score: 115
Period size: 31 Copynumber: 3.4 Consensus size: 31
50635719 TTGCATTCAC
*
50635729 ATTCTGATTCTGATTCTGTTACCTGATACTG
1 ATTCTGATTCTGATTCTGTTACCTGATTCTG
* *
50635760 ATTCTGATTCTG-TCACCTAATT--CTGATTCTG
1 ATTCTGATTCTGAT--TCT-GTTACCTGATTCTG
* *
50635791 ATTCTGATTCTAATTCTGTCACCTGATTCTG
1 ATTCTGATTCTGATTCTGTTACCTGATTCTG
50635822 ATTCTGATTCT
1 ATTCTGATTCT
50635833 CATTTTGATT
Statistics
Matches: 60, Mismatches: 7, Indels: 12
0.76 0.09 0.15
Matches are distributed among these distances:
29 1 0.02
30 3 0.05
31 51 0.85
32 3 0.05
33 2 0.03
ACGTcount: A:0.19, C:0.21, G:0.13, T:0.46
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTGTTACCTGATTCTG
Found at i:50635792 original size:37 final size:37
Alignment explanation
Indices: 50635751--50635844 Score: 143
Period size: 37 Copynumber: 2.5 Consensus size: 37
50635741 ATTCTGTTAC
*
50635751 CTGATACTGATTCTGATTCTGTCACCTAATTCTGATT
1 CTGATTCTGATTCTGATTCTGTCACCTAATTCTGATT
* *
50635788 CTGATTCTGATTCTAATTCTGTCACCTGATTCTGATT
1 CTGATTCTGATTCTGATTCTGTCACCTAATTCTGATT
* *
50635825 CTGATTCTCATTTTGATTCT
1 CTGATTCTGATTCTGATTCT
50635845 AGTTCTGATA
Statistics
Matches: 51, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
37 51 1.00
ACGTcount: A:0.19, C:0.21, G:0.13, T:0.47
Consensus pattern (37 bp):
CTGATTCTGATTCTGATTCTGTCACCTAATTCTGATT
Found at i:50639052 original size:40 final size:40
Alignment explanation
Indices: 50638932--50639153 Score: 218
Period size: 40 Copynumber: 5.6 Consensus size: 40
50638922 TTGAATGCTG
* * * * * *
50638932 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTACTAAA
** * * *
50638972 TCCGGACTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAA
**
50639012 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
**
50639052 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGA-TTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* *
50639091 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* * *
50639130 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
50639154 TGAACGAGGA
Statistics
Matches: 159, Mismatches: 19, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
38 5 0.03
39 60 0.38
40 86 0.54
41 8 0.05
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
Found at i:50639098 original size:39 final size:40
Alignment explanation
Indices: 50638985--50639153 Score: 216
Period size: 39 Copynumber: 4.3 Consensus size: 40
50638975 GGACTAAGAT
* * * **
50638985 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
50639025 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
*
50639065 CCGAAGGCATTCGTGCGA-TTGTTAAATCCGGGTTATGTC
1 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
* ** * * *
50639104 CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
50639143 CCGAAGGCATT
1 CCGAAGGCATT
50639154 TGAACGAGGA
Statistics
Matches: 117, Mismatches: 11, Indels: 3
0.89 0.08 0.02
Matches are distributed among these distances:
38 5 0.04
39 59 0.50
40 53 0.45
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
Found at i:50639177 original size:78 final size:79
Alignment explanation
Indices: 50639007--50639188 Score: 206
Period size: 78 Copynumber: 2.3 Consensus size: 79
50638997 GTGCGAGATA
** * *
50639007 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
** **
50639072 CATTCGTGCGATTG
66 CATTCGAACGAGAG
* * * *
50639086 TTAAATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
*
50639150 CATTTGAACGAGGAG
66 CATTCGAACGA-GAG
* *
50639165 CTATATCC-GGTTAAATCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGG
50639189 TACGTGATTG
Statistics
Matches: 85, Mismatches: 17, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
78 51 0.60
79 34 0.40
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (79 bp):
CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
CATTCGAACGAGAG
Found at i:50646906 original size:40 final size:40
Alignment explanation
Indices: 50646823--50647045 Score: 213
Period size: 40 Copynumber: 5.6 Consensus size: 40
50646813 TTGAATGCTG
* * * * *
50646823 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGA-T-ACTAAA
* * *
50646863 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGATACTAAA
* **
50646903 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGATACTAAA
**
50646943 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGA-ATTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGA-TACTAAA
* * *
50646983 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGATACTAAA
* *
50647022 TCCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
50647046 TGAACGAGGA
Statistics
Matches: 159, Mismatches: 18, Indels: 13
0.84 0.09 0.07
Matches are distributed among these distances:
39 34 0.21
40 114 0.72
41 10 0.06
42 1 0.01
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGATACTAAA
Found at i:50646960 original size:80 final size:79
Alignment explanation
Indices: 50646823--50647047 Score: 242
Period size: 80 Copynumber: 2.8 Consensus size: 79
50646813 TTGAATGCTG
* * * * * *
50646823 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAG-TGAATATATCCGGATTAAGAT-CCGAAGGCCT
1 TCCGGGTTAAGTCCCGAAGGCATTGTGC-GAGTTG-ATAAATCCGGGTTAAG-TCCCGAAGGCAT
50646886 TTGTGCGAGA-TACTAAA
63 TTGTGCGA-ATTACTAAA
* *
50646903 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTTGATAAATCCGGGTTAAGTCCCGAAGGCATTT
**
50646968 GTGCGAATTGTTAAA
65 GTGCGAATTACTAAA
* * * *
50646983 TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTT-ACTAAATCCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTGA-TAAATCCGGGTTAAGTCCCGAAGGCATTT
50647047 G
65 G
50647048 AACGAGGAGC
Statistics
Matches: 124, Mismatches: 16, Indels: 11
0.82 0.11 0.07
Matches are distributed among these distances:
79 37 0.30
80 81 0.65
81 6 0.05
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTGATAAATCCGGGTTAAGTCCCGAAGGCATTTG
TGCGAATTACTAAA
Found at i:50647065 original size:79 final size:80
Alignment explanation
Indices: 50646898--50647080 Score: 217
Period size: 79 Copynumber: 2.3 Consensus size: 80
50646888 GTGCGAGATA
** *
50646898 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGG
** **
50646963 CATTCGTGCGAATTG
66 CATTCGAACGAAGAG
* * * *
50646978 TTAAATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAATCCGGGCTATGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGG
* *
50647042 CATTTGAACGAGGAG
66 CATTCGAACGAAGAG
* *
50647057 CTATATCC-GGTTAAATCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGG
50647081 TACGTGATTT
Statistics
Matches: 86, Mismatches: 17, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
78 14 0.16
79 45 0.52
80 27 0.31
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (80 bp):
CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGG
CATTCGAACGAAGAG
Found at i:50647065 original size:119 final size:120
Alignment explanation
Indices: 50646823--50647080 Score: 281
Period size: 119 Copynumber: 2.2 Consensus size: 120
50646813 TTGAATGCTG
* * * * *
50646823 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATATATCCGGATTAAGATCCGAAGGCCTTT
1 TCCGGGTTAAGTCCCGAAGGCTTCGTGCGAAGTGAATAAATCCGGATTAAGATCCGAAGGCCATT
* ** ** *
50646888 GTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
66 GTGCGAGATACTAAATCCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTAAA
* * * *
50646943 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAATTG-TTAAATCCGGGTTATG-TCCCGAAGG-CA
1 TCCGGGTTAAGTCCCGAAGGC-TTCGTGCGAAGTGAATAAATCCGGATTAAGAT-CCGAAGGCCA
* * * * *
50647005 TTGTGTGAGTTACTAAATCCGGGCTATGTCCCGAAGGCATTTGAACGAGGAGCTATA
64 TTGTGCGAGATACTAAATCCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTAAA
*
50647062 TCC-GGTTAAATCCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
50647081 TACGTGATTT
Statistics
Matches: 115, Mismatches: 21, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
118 15 0.13
119 51 0.44
120 39 0.34
121 10 0.09
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (120 bp):
TCCGGGTTAAGTCCCGAAGGCTTCGTGCGAAGTGAATAAATCCGGATTAAGATCCGAAGGCCATT
GTGCGAGATACTAAATCCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTAAA
Found at i:50662276 original size:25 final size:25
Alignment explanation
Indices: 50662207--50662281 Score: 71
Period size: 25 Copynumber: 3.0 Consensus size: 25
50662197 GCTACATTCT
* * *
50662207 GACCCATAGCTCGTGTGAGCATACC
1 GACCTATAGCTTGAGTGAGCATACC
** * *
50662232 GATTTATAGTTTGTA-AGAGCATACC
1 GACCTATAGCTTG-AGTGAGCATACC
50662257 GACCTATAGCTTGAGTGAGCATACC
1 GACCTATAGCTTGAGTGAGCATACC
50662282 AATTCACGGC
Statistics
Matches: 37, Mismatches: 11, Indels: 4
0.71 0.21 0.08
Matches are distributed among these distances:
24 1 0.03
25 36 0.97
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.27
Consensus pattern (25 bp):
GACCTATAGCTTGAGTGAGCATACC
Found at i:50670686 original size:40 final size:40
Alignment explanation
Indices: 50670602--50670825 Score: 289
Period size: 40 Copynumber: 5.7 Consensus size: 40
50670592 TTGAATGATG
* * *
50670602 TCCGGGCTAAGTCCCGAAGGC-TTTGGGCTAAGTGAC-AATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAA-A
* * *
50670642 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
50670682 TCCGGGCTAAG--CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
50670720 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
50670760 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
50670801 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
50670826 AACGAGGAGC
Statistics
Matches: 166, Mismatches: 12, Indels: 12
0.87 0.06 0.06
Matches are distributed among these distances:
38 35 0.21
40 120 0.72
41 11 0.07
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:50670843 original size:80 final size:79
Alignment explanation
Indices: 50670693--50670858 Score: 219
Period size: 80 Copynumber: 2.1 Consensus size: 79
50670683 CCGGGCTAAG
* ** *
50670693 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA
1 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGACTA
*
50670758 AATCCGGGTTAAGTC
66 AATCC-GGTTAAATC
*
50670773 CCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGC
1 CCGAAGGCATTTGTGCGAGTTACTA-AATCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGA-C
* *
50670836 TATATCCGGTTAAATT
64 TAAATCCGGTTAAATC
50670852 CCGAAGG
1 CCGAAGG
50670859 TACGTGATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
79 15 0.20
80 59 0.78
81 2 0.03
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGACTA
AATCCGGTTAAATC
Found at i:50673985 original size:46 final size:46
Alignment explanation
Indices: 50673935--50674110 Score: 189
Period size: 46 Copynumber: 3.8 Consensus size: 46
50673925 TGGTTAAGCA
50673935 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * * *
50673981 TCCGAACTCGTTGAGTTGAGTCTGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
50674026 CATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* **
50674074 CCCGAGGTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
50674111 GCGAGTTACA
Statistics
Matches: 107, Mismatches: 14, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 61 0.57
47 29 0.27
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.22, C:0.19, G:0.29, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:50674091 original size:93 final size:93
Alignment explanation
Indices: 50673932--50674102 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
50673922 GGATGGTTAA
* *
50673932 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
*
50673997 TGAGTCTGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
* **
50674025 GCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGCCCGAGGTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
50674090 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
50674103 ACTTATGGGC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:50679324 original size:46 final size:46
Alignment explanation
Indices: 50679274--50679449 Score: 173
Period size: 46 Copynumber: 3.8 Consensus size: 46
50679264 TGGTTGAGCA
50679274 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * * * *
50679320 TCCGAACTCGTTGAGTTGAGTTCAAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
50679365 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
50679413 -CCCAAGCTTGTTGAGTTGAGTCCGAGTTCACATATGG
1 TCCGAA-CTCGTTGAGTTGAGTCCGAGTTCACTTATGG
50679450 GCGGGTTACA
Statistics
Matches: 104, Mismatches: 16, Indels: 20
0.74 0.11 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 7 0.07
46 56 0.54
47 27 0.26
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:50679441 original size:93 final size:93
Alignment explanation
Indices: 50679271--50679441 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
50679261 GGATGGTTGA
* *
50679271 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCCAACTCGTTGAGT
*
50679336 TGAGTTCAAGTTCGTGAAATGTAACTAG
66 TGAGTCCAAGTTCGTGAAATGTAACTAG
*
50679364 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CCCAAGCTTGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCCAA-CTCGTTGAG
*
50679428 TTGAGTCCGAGTTC
65 TTGAGTCCAAGTTC
50679442 ACATATGGGC
Statistics
Matches: 72, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
92 4 0.06
93 68 0.94
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCCAACTCGTTGAGT
TGAGTCCAAGTTCGTGAAATGTAACTAG
Found at i:50682778 original size:12 final size:12
Alignment explanation
Indices: 50682763--50682793 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
50682753 CTCCAGTTTT
*
50682763 CACACAGCCTAG
1 CACACAGCCTAA
50682775 CACACAGCCTAA
1 CACACAGCCTAA
50682787 CACACAG
1 CACACAG
50682794 GTGTATGAGG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.39, C:0.42, G:0.13, T:0.06
Consensus pattern (12 bp):
CACACAGCCTAA
Found at i:50686355 original size:11 final size:11
Alignment explanation
Indices: 50686339--50686363 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
50686329 AAAATTATAA
50686339 AAACTAATATT
1 AAACTAATATT
50686350 AAACTAATATT
1 AAACTAATATT
50686361 AAA
1 AAA
50686364 GGAAAATGAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.60, C:0.08, G:0.00, T:0.32
Consensus pattern (11 bp):
AAACTAATATT
Found at i:50712528 original size:27 final size:26
Alignment explanation
Indices: 50712477--50712565 Score: 115
Period size: 27 Copynumber: 3.3 Consensus size: 26
50712467 CCCCAGTTTT
* * *
50712477 TAAAATGACCGAATACCCTTGTAGGG
1 TAAAATGACCTAATACCCCTATAGGG
50712503 TAAAATGACCATAATACCCCTATAGGG
1 TAAAATGACC-TAATACCCCTATAGGG
* *
50712530 TAAAATGACTGTAATACCCCTATATGG
1 TAAAATGAC-CTAATACCCCTATAGGG
50712557 TAAAATGAC
1 TAAAATGAC
50712566 GATTATGCCC
Statistics
Matches: 56, Mismatches: 5, Indels: 3
0.88 0.08 0.05
Matches are distributed among these distances:
26 10 0.18
27 46 0.82
ACGTcount: A:0.39, C:0.19, G:0.17, T:0.25
Consensus pattern (26 bp):
TAAAATGACCTAATACCCCTATAGGG
Found at i:50714366 original size:40 final size:40
Alignment explanation
Indices: 50714277--50714497 Score: 195
Period size: 40 Copynumber: 5.5 Consensus size: 40
50714267 CTCGTTCAAG
* * * **
50714277 TGCCTTCGGGACATAACCCGG-TTATAGTAACTCATAC-AA
1 TGCCTTCGGGACTTAACCCGGAAT-TAGAAACTCGCACAAA
* *
50714316 TGCCTTCGGGACTTAACCCGGATTTTA-AAACTCGCACGAA
1 TGCCTTCGGGACTTAACCCGGA-ATTAGAAACTCGCACAAA
* *
50714356 TGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACAAA
1 TGCCTTCGGGACTTAACCCGGAATTAGAAACTCGCACAAA
*
50714396 GGCCTTCGGGACTTAACCCGGAATTA-ATAACTCGCACAAA
1 TGCCTTCGGGACTTAACCCGGAATTAGA-AACTCGCACAAA
** ** *
50714436 TGCCTTC-GGATCTTAGTCCGG-ATATAGTCACTTAGCACAAA
1 TGCCTTCGGGA-CTTAACCCGGAAT-TAGAAAC-TCGCACAAA
*
50714477 -GCCTTCGGGACTTAGCCCGGA
1 TGCCTTCGGGACTTAACCCGGA
50714498 CAGCATTCAA
Statistics
Matches: 153, Mismatches: 18, Indels: 20
0.80 0.09 0.10
Matches are distributed among these distances:
39 35 0.23
40 105 0.69
41 13 0.08
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
TGCCTTCGGGACTTAACCCGGAATTAGAAACTCGCACAAA
Found at i:50714428 original size:80 final size:78
Alignment explanation
Indices: 50714277--50714497 Score: 250
Period size: 80 Copynumber: 2.8 Consensus size: 78
50714267 CTCGTTCAAG
* * ** * *
50714277 TGCCTTCGGGACATAACCCGGTTATAGTAACTCATACAATGCCTTCGGGACTTAACCCGGATTTT
1 TGCCTTCGGGACTTAACCCGGATATAGT-ACTCGCACAAAGCCTTCGGGACTTAACCCGGATATT
*
50714342 AAAACTCGCACGAA
65 AAAACTCGCACAAA
50714356 TGCCTTCGGGACTTAACCCGGA-ATTAGTATCTCGCACAAAGGCCTTCGGGACTTAACCCGGA-A
1 TGCCTTCGGGACTTAACCCGGATA-TAGTA-CTCGCACAAA-GCCTTCGGGACTTAACCCGGATA
50714419 TTAATAACTCGCACAAA
63 TTAA-AACTCGCACAAA
** * *
50714436 TGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 TGCCTTCGGGA-CTTAACCCGGATATAGT-AC-TCGCACAAAGCCTTCGGGACTTAACCCGGA
50714498 CAGCATTCAA
Statistics
Matches: 123, Mismatches: 11, Indels: 15
0.83 0.07 0.10
Matches are distributed among these distances:
78 2 0.02
79 38 0.31
80 73 0.59
81 10 0.08
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (78 bp):
TGCCTTCGGGACTTAACCCGGATATAGTACTCGCACAAAGCCTTCGGGACTTAACCCGGATATTA
AAACTCGCACAAA
Found at i:50724277 original size:30 final size:29
Alignment explanation
Indices: 50724241--50724301 Score: 95
Period size: 30 Copynumber: 2.1 Consensus size: 29
50724231 AAATGGAAGT
* *
50724241 TTTGGCACTGAGTGTGCGATTTAAACTAGC
1 TTTGGCACTAAATGTGCGATTT-AACTAGC
50724271 TTTGGCACTAAATGTGCGATTTAACTAGC
1 TTTGGCACTAAATGTGCGATTTAACTAGC
50724300 TT
1 TT
50724302 CGGCTACTTG
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
29 9 0.31
30 20 0.69
ACGTcount: A:0.25, C:0.16, G:0.23, T:0.36
Consensus pattern (29 bp):
TTTGGCACTAAATGTGCGATTTAACTAGC
Found at i:50737840 original size:30 final size:30
Alignment explanation
Indices: 50737788--50737957 Score: 85
Period size: 30 Copynumber: 5.7 Consensus size: 30
50737778 TTAACAATCG
* * * *
50737788 ATAGCCGAAGCTAACTCATTTCATAATTCA
1 ATAGCCGAACCTATCCCTTTTCATAATTCA
* * * **
50737818 ATAGTCGAAGCTATCCTTTTTCATAATTTG
1 ATAGCCGAACCTATCCCTTTTCATAATTCA
* * *
50737848 ATAGCCGAACCTATCCCTTTGCATAGTTTA
1 ATAGCCGAACCTATCCCTTTTCATAATTCA
** * **
50737878 ATATTC-ATCACC-ATCCCTTTTCATTATTTG
1 ATAGCCGA--ACCTATCCCTTTTCATAATTCA
* * * **
50737908 ATGGTCGTCACC-ATCCCTTTTCATAATTTG
1 ATAGCCG-AACCTATCCCTTTTCATAATTCA
*
50737938 ATAGCTGAACCTATCCCTTT
1 ATAGCCGAACCTATCCCTTT
50737958 CATTGTTCGA
Statistics
Matches: 108, Mismatches: 27, Indels: 10
0.74 0.19 0.07
Matches are distributed among these distances:
29 4 0.04
30 101 0.94
31 3 0.03
ACGTcount: A:0.26, C:0.25, G:0.11, T:0.38
Consensus pattern (30 bp):
ATAGCCGAACCTATCCCTTTTCATAATTCA
Found at i:50737926 original size:60 final size:58
Alignment explanation
Indices: 50737860--50738059 Score: 213
Period size: 60 Copynumber: 3.4 Consensus size: 58
50737850 AGCCGAACCT
* * * *
50737860 ATCCCTTTGCATAGTTTAATATTCATCACCATCCCTTTTCATTATTTGATGGTCGTCACC
1 ATCCCTTTTCATAGTTTGATA-TC-TCACCATCCCTTTTCATTGTTCGATGGTCGTCACC
* * * *
50737920 ATCCCTTTTCATAATTTGATAGCTGAACCTATCCC-TTTCATTGTTCGATGGTCTTCACC
1 ATCCCTTTTCATAGTTTGATATCT-CACC-ATCCCTTTTCATTGTTCGATGGTCGTCACC
* * * * *
50737979 ATCCCTTTTCATTGTTTGATGGTCGTCACCATCCCTTTTCATTGTTCGGTGGTAGACACC
1 ATCCCTTTTCATAGTTTGAT-ATC-TCACCATCCCTTTTCATTGTTCGATGGTCGTCACC
*
50738039 ATCCCTTTTCATAATTTGATA
1 ATCCCTTTTCATAGTTTGATA
50738060 GCCGAAGCTA
Statistics
Matches: 115, Mismatches: 20, Indels: 11
0.79 0.14 0.08
Matches are distributed among these distances:
58 1 0.01
59 48 0.42
60 65 0.57
61 1 0.01
ACGTcount: A:0.20, C:0.26, G:0.12, T:0.41
Consensus pattern (58 bp):
ATCCCTTTTCATAGTTTGATATCTCACCATCCCTTTTCATTGTTCGATGGTCGTCACC
Found at i:50737991 original size:30 final size:30
Alignment explanation
Indices: 50737885--50738050 Score: 194
Period size: 30 Copynumber: 5.6 Consensus size: 30
50737875 TTAATATTCA
*
50737885 TCACCATCCCTTTTCATTATTTGATGGTCG
1 TCACCATCCCTTTTCATTGTTTGATGGTCG
** *
50737915 TCACCATCCCTTTTCATAATTTGATAG-C-
1 TCACCATCCCTTTTCATTGTTTGATGGTCG
* * *
50737943 TGAACCTATCCC-TTTCATTGTTCGATGGTCT
1 T-CACC-ATCCCTTTTCATTGTTTGATGGTCG
50737974 TCACCATCCCTTTTCATTGTTTGATGGTCG
1 TCACCATCCCTTTTCATTGTTTGATGGTCG
* * *
50738004 TCACCATCCCTTTTCATTGTTCGGTGGTAG
1 TCACCATCCCTTTTCATTGTTTGATGGTCG
*
50738034 ACACCATCCCTTTTCAT
1 TCACCATCCCTTTTCAT
50738051 AATTTGATAG
Statistics
Matches: 117, Mismatches: 14, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
28 1 0.01
29 21 0.18
30 94 0.80
31 1 0.01
ACGTcount: A:0.17, C:0.28, G:0.13, T:0.41
Consensus pattern (30 bp):
TCACCATCCCTTTTCATTGTTTGATGGTCG
Found at i:50738006 original size:89 final size:90
Alignment explanation
Indices: 50737830--50738020 Score: 294
Period size: 89 Copynumber: 2.1 Consensus size: 90
50737820 AGTCGAAGCT
* * *
50737830 ATCCTTTTTCATAATTTGATAGCCGAACCTATCCCTTTGCATAGTTTAATATTCATCACCATCCC
1 ATCCCTTTTCATAATTTGATAGCCGAACCTATCCCTTTGCATAGTTCAATAGTCATCACCATCCC
50737895 TTTTCATTATTTGATGGTCGTCACC
66 TTTTCATTATTTGATGGTCGTCACC
* * * * *
50737920 ATCCCTTTTCATAATTTGATAGCTGAACCTATCCCTTT-CATTGTTCGATGGTCTTCACCATCCC
1 ATCCCTTTTCATAATTTGATAGCCGAACCTATCCCTTTGCATAGTTCAATAGTCATCACCATCCC
*
50737984 TTTTCATTGTTTGATGGTCGTCACC
66 TTTTCATTATTTGATGGTCGTCACC
50738009 ATCCCTTTTCAT
1 ATCCCTTTTCAT
50738021 TGTTCGGTGG
Statistics
Matches: 92, Mismatches: 9, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
89 56 0.61
90 36 0.39
ACGTcount: A:0.20, C:0.27, G:0.11, T:0.42
Consensus pattern (90 bp):
ATCCCTTTTCATAATTTGATAGCCGAACCTATCCCTTTGCATAGTTCAATAGTCATCACCATCCC
TTTTCATTATTTGATGGTCGTCACC
Found at i:50738073 original size:60 final size:59
Alignment explanation
Indices: 50737890--50738089 Score: 224
Period size: 60 Copynumber: 3.4 Consensus size: 59
50737880 ATTCATCACC
* * *
50737890 ATCCCTTTTCATTATTTGATGGTCGTCACCATCCCTTTTCATAATTTGATAGCTGAACCT
1 ATCCCTTTTCATTGTTCGATGGTCGTCACCATCCCTTTTCATAATTTGATAGCCGAA-CT
* ** * * * *
50737950 ATCCC-TTTCATTGTTCGATGGTCTTCACCATCCCTTTTCATTGTTTGATGGTCGTCACC
1 ATCCCTTTTCATTGTTCGATGGTCGTCACCATCCCTTTTCATAATTTGATAGCCG-AACT
* * *
50738009 ATCCCTTTTCATTGTTCGGTGGTAGACACCATCCCTTTTCATAATTTGATAGCCGAAGCT
1 ATCCCTTTTCATTGTTCGATGGTCGTCACCATCCCTTTTCATAATTTGATAGCCGAA-CT
*
50738069 ATCCCTTTCCATTAG-TCGATG
1 ATCCCTTTTCATT-GTTCGATG
50738090 ATTGTTGATA
Statistics
Matches: 114, Mismatches: 22, Indels: 8
0.79 0.15 0.06
Matches are distributed among these distances:
59 48 0.42
60 65 0.57
61 1 0.01
ACGTcount: A:0.19, C:0.27, G:0.14, T:0.40
Consensus pattern (59 bp):
ATCCCTTTTCATTGTTCGATGGTCGTCACCATCCCTTTTCATAATTTGATAGCCGAACT
Found at i:50740179 original size:45 final size:45
Alignment explanation
Indices: 50740130--50740219 Score: 180
Period size: 45 Copynumber: 2.0 Consensus size: 45
50740120 ACAACATTTG
50740130 ATCCCAAGCATAGTACATTTACGATTTTTTGTGAATGATTGTCAA
1 ATCCCAAGCATAGTACATTTACGATTTTTTGTGAATGATTGTCAA
50740175 ATCCCAAGCATAGTACATTTACGATTTTTTGTGAATGATTGTCAA
1 ATCCCAAGCATAGTACATTTACGATTTTTTGTGAATGATTGTCAA
50740220 TAAATTTTCT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 45 1.00
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.38
Consensus pattern (45 bp):
ATCCCAAGCATAGTACATTTACGATTTTTTGTGAATGATTGTCAA
Found at i:50746054 original size:28 final size:29
Alignment explanation
Indices: 50746023--50746111 Score: 110
Period size: 28 Copynumber: 3.1 Consensus size: 29
50746013 CCTACTCTCT
* *
50746023 TTTATATGGCCCATTAGGCCC-ATTTACA
1 TTTATATGGCCCATTAGGCCCAAATCACA
*
50746051 TTTATGTGGCCCATTAGGCCCAAATCACA
1 TTTATATGGCCCATTAGGCCCAAATCACA
* * *
50746080 TTCATATGG-CCACTAGCCCCAAATCACA
1 TTTATATGGCCCATTAGGCCCAAATCACA
50746108 TTTA
1 TTTA
50746112 CAGTCATGCT
Statistics
Matches: 52, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
28 40 0.77
29 12 0.23
ACGTcount: A:0.28, C:0.28, G:0.13, T:0.30
Consensus pattern (29 bp):
TTTATATGGCCCATTAGGCCCAAATCACA
Found at i:50746360 original size:8 final size:8
Alignment explanation
Indices: 50746325--50746367 Score: 50
Period size: 8 Copynumber: 5.4 Consensus size: 8
50746315 GTAGCCCAAC
50746325 TTTCGGCT
1 TTTCGGCT
*
50746333 TTTCAGCT
1 TTTCGGCT
*
50746341 TTTTGGCT
1 TTTCGGCT
*
50746349 TTTCGGCA
1 TTTCGGCT
*
50746357 TTTCGACT
1 TTTCGGCT
50746365 TTT
1 TTT
50746368 GCCGATTCAT
Statistics
Matches: 28, Mismatches: 7, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
8 28 1.00
ACGTcount: A:0.07, C:0.21, G:0.19, T:0.53
Consensus pattern (8 bp):
TTTCGGCT
Found at i:50756305 original size:27 final size:27
Alignment explanation
Indices: 50756275--50756354 Score: 115
Period size: 27 Copynumber: 3.0 Consensus size: 27
50756265 TCTGATACTG
*
50756275 ATTCTGTACTGGGCTTAGGCCCACCTT
1 ATTCTGTACTGGGCTTAGGCCCACCTC
50756302 ATTCTGTACTGGGCTTAGGCCCACCTC
1 ATTCTGTACTGGGCTTAGGCCCACCTC
* * **
50756329 ATTTTGTATTACGCTTAGGCCCACCT
1 ATTCTGTACTGGGCTTAGGCCCACCT
50756355 GATTTTGTTA
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 48 1.00
ACGTcount: A:0.16, C:0.30, G:0.20, T:0.34
Consensus pattern (27 bp):
ATTCTGTACTGGGCTTAGGCCCACCTC
Found at i:50756374 original size:27 final size:27
Alignment explanation
Indices: 50756279--50756371 Score: 105
Period size: 27 Copynumber: 3.4 Consensus size: 27
50756269 ATACTGATTC
* * *
50756279 TGTACTGGGCTTAGGCCCACCTTATTC
1 TGTAATGGGCTTAGGCCCACCTCATTT
*
50756306 TGTACTGGGCTTAGGCCCACCTCATTT
1 TGTAATGGGCTTAGGCCCACCTCATTT
* ** *
50756333 TGTATTACGCTTAGGCCCACCTGATTT
1 TGTAATGGGCTTAGGCCCACCTCATTT
50756360 TGTTAATGGGCT
1 TG-TAATGGGCT
50756372 AGGACCAACT
Statistics
Matches: 56, Mismatches: 9, Indels: 1
0.85 0.14 0.02
Matches are distributed among these distances:
27 50 0.89
28 6 0.11
ACGTcount: A:0.16, C:0.26, G:0.23, T:0.35
Consensus pattern (27 bp):
TGTAATGGGCTTAGGCCCACCTCATTT
Found at i:50758638 original size:77 final size:78
Alignment explanation
Indices: 50758544--50758691 Score: 217
Period size: 77 Copynumber: 1.9 Consensus size: 78
50758534 CAGTGATGTT
* * ** *
50758544 TATCTGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTATTTCAGGACTTAGGGTCC-CAGGCTA
1 TATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTATAACAGGACTTAAGGTCCGCAGGCTA
*
50758608 TGTGCTAGAATTA
66 CGTGCTAGAATTA
* *
50758621 TATCCGGACTTAAGGTCCGCAGGCTTTGTGCTGGAATTATAACCGGACTTAAGGTCCGCAGGCTA
1 TATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTATAACAGGACTTAAGGTCCGCAGGCTA
50758686 CGTGCT
66 CGTGCT
50758692 GGAAATATGT
Statistics
Matches: 62, Mismatches: 8, Indels: 1
0.87 0.11 0.01
Matches are distributed among these distances:
77 50 0.81
78 12 0.19
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (78 bp):
TATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTATAACAGGACTTAAGGTCCGCAGGCTA
CGTGCTAGAATTA
Found at i:50758658 original size:39 final size:39
Alignment explanation
Indices: 50758544--50758695 Score: 216
Period size: 39 Copynumber: 3.9 Consensus size: 39
50758534 CAGTGATGTT
* *
50758544 TATCTGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
1 TATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTA
* * * *
50758583 TTTCAGGACTTAGGGTCC-CAGGCTATGTGCTAGAATTA
1 TATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTA
*
50758621 TATCCGGACTTAAGGTCCGCAGGCTTTGTGCTGGAATTA
1 TATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTA
* *
50758660 TAACCGGACTTAAGGTCCGCAGGCTACGTGCTGGAA
1 TATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAA
50758696 ATATGTTCGG
Statistics
Matches: 101, Mismatches: 11, Indels: 2
0.89 0.10 0.02
Matches are distributed among these distances:
38 34 0.34
39 67 0.66
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.28
Consensus pattern (39 bp):
TATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTA
Found at i:50766408 original size:39 final size:39
Alignment explanation
Indices: 50766346--50766494 Score: 208
Period size: 39 Copynumber: 3.8 Consensus size: 39
50766336 CAGTGATGTT
* *
50766346 TATCCGGACTTAGGGTCCACAGGCTATGTGCTGGAATTA
1 TATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTA
* *
50766385 TATCAGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
1 TATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTA
* * *
50766424 TATCCGAACTTAAGGTCCGCAGGCTATGTACTAGAATTA
1 TATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTA
* * *
50766463 TAACCGGACTTAAGGTCTGCAGGCTACGTGCT
1 TATCCGGACTTAAGGTCCGCAGGCTATGTGCT
50766495 AGAAATATGT
Statistics
Matches: 98, Mismatches: 12, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 98 1.00
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.28
Consensus pattern (39 bp):
TATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTA
Found at i:50769299 original size:26 final size:26
Alignment explanation
Indices: 50769270--50769320 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
50769260 CCAACACACC
* *
50769270 AATATCGTAGCAAAGATGCCAGTAAT
1 AATATCGCAGCAAAGATACCAGTAAT
*
50769296 AATATCGCAGCAAAGCTACCAGTAA
1 AATATCGCAGCAAAGATACCAGTAA
50769321 CAGTAATGCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.43, C:0.20, G:0.18, T:0.20
Consensus pattern (26 bp):
AATATCGCAGCAAAGATACCAGTAAT
Found at i:50777340 original size:48 final size:48
Alignment explanation
Indices: 50777269--50777650 Score: 345
Period size: 48 Copynumber: 8.0 Consensus size: 48
50777259 ATGACATTTG
*
50777269 GTTGATATGTGTGCCAGTGTAAGAACATGTCTGGGACATGGCATCGGA
1 GTTGATATGTGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGA
* * *
50777317 GTTGATATGTGTGCTAGTGTAAGACCATGTCTGGGGCATGGCATCGGCC
1 GTTGATATGTGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGG-A
* * * * * *
50777366 G--CATTATGAGAGCCAGTGTAAGACCATCTTTAGGACATGGCAT-GG-
1 GTTGA-TATGTGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGA
*** * * *
50777411 GCCACATTATGAGAGCCAGTGTAAGACCATGTCTAGGACATGGCATC--A
1 G-TTGA-TATGTGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGA
* *
50777459 GTAATGATATGTGTGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCCA
1 GT--TGATATGTGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGG--A
** * * *
50777511 CAT--TATGAG-GCCAGTGTAAGACCATGTCTGTGACATGGCATCAGA
1 GTTGATATGTGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGA
* * * *
50777556 GTTAATATGTGTGCTAGTATAAGACCATGTCTGGGACATGGCATTGGCA
1 GTTGATATGTGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGG-A
*
50777605 -TTGATATGTGTGCTAGTGTAAGACCATGTCTAGGG-CATGGCATCGG
1 GTTGATATGTGTGCCAGTGTAAGACCATGTCT-GGGACATGGCATCGG
50777651 TAATTGACGC
Statistics
Matches: 276, Mismatches: 40, Indels: 36
0.78 0.11 0.10
Matches are distributed among these distances:
45 3 0.01
47 39 0.14
48 226 0.82
49 6 0.02
50 1 0.00
52 1 0.00
ACGTcount: A:0.26, C:0.17, G:0.30, T:0.27
Consensus pattern (48 bp):
GTTGATATGTGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGA
Found at i:50779301 original size:79 final size:82
Alignment explanation
Indices: 50779190--50779374 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
50779180 GCTACTCGTT
* *
50779190 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
50779253 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
50779270 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
50779333 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
*
50779350 CAAA-GCCTTCGGGACTTAGGCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
50779375 CATCATTCAA
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 55 0.60
80 33 0.36
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.24
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:50779374 original size:40 final size:40
Alignment explanation
Indices: 50779171--50779374 Score: 229
Period size: 40 Copynumber: 5.1 Consensus size: 40
50779161 CGGAATTTAA
** *
50779171 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
50779211 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
50779251 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
50779290 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * * *
50779330 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGG
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
50779370 CCGGA
1 CCGGA
50779375 CATCATTCAA
Statistics
Matches: 141, Mismatches: 16, Indels: 14
0.82 0.09 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.23
40 94 0.67
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:50788314 original size:48 final size:48
Alignment explanation
Indices: 50788242--50788461 Score: 228
Period size: 48 Copynumber: 4.6 Consensus size: 48
50788232 ATGTGTGCTT
50788242 GTGTAAGACCATGTCTGGGACATGGCATCGGCCATATTATGAGAGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCCATATTATGAGAGCCA
* * * * * * *
50788290 ATGTAAGATCATGTTTGGGACATGGAATCAGCCACATTTTGAGAGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCCATATTATGAGAGCCA
* *** * * *
50788338 GTGTAAGACCATGTCTAGGACATGGCATCGGTGTTAATATGTGTA-CTA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCCATATTATGAG-AGCCA
* * * * * *
50788386 GTGTAAGACCATGTGTGGAACATGGCCTAGGCCAGAGTATGAGAGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCCATATTATGAGAGCCA
*
50788434 GTGTAAGACCATG-ATGGGACATGGCATC
1 GTGTAAGACCATGTCTGGGACATGGCATC
50788462 AGTGTTGATA
Statistics
Matches: 133, Mismatches: 37, Indels: 5
0.76 0.21 0.03
Matches are distributed among these distances:
47 12 0.09
48 120 0.90
49 1 0.01
ACGTcount: A:0.29, C:0.18, G:0.29, T:0.25
Consensus pattern (48 bp):
GTGTAAGACCATGTCTGGGACATGGCATCGGCCATATTATGAGAGCCA
Found at i:50788409 original size:96 final size:96
Alignment explanation
Indices: 50788242--50788504 Score: 289
Period size: 96 Copynumber: 2.8 Consensus size: 96
50788232 ATGTGTGCTT
*** * * * *
50788242 GTGTAAGACCATGTCTGGGACATGGCATCGGCCATATTATGAG-AGCCAATGTAAGATCATGTTT
1 GTGTAAGACCATGTCTGGGACATGGCATCGGTGTTAATATGTGTA-CTAATGTAAGACCATGTTT
* *
50788306 GGGACATGGAATCA-GCCACATTTTGAGAGCCA
65 GGGACATGGAAT-AGGCCACAGTATGAGAGCCA
* * *
50788338 GTGTAAGACCATGTCTAGGACATGGCATCGGTGTTAATATGTGTACTAGTGTAAGACCATGTGTG
1 GTGTAAGACCATGTCTGGGACATGGCATCGGTGTTAATATGTGTACTAATGTAAGACCATGTTTG
* ** *
50788403 GAACATGGCCTAGGCCAGAGTATGAGAGCCA
66 GGACATGGAATAGGCCACAGTATGAGAGCCA
* * * * * *
50788434 GTGTAAGACCATG-ATGGGACATGGCATCAGTGTTGATATGTGTGCTACTGTAAGACAATGTTTG
1 GTGTAAGACCATGTCTGGGACATGGCATCGGTGTTAATATGTGTACTAATGTAAGACCATGTTTG
50788498 GGACATG
66 GGACATG
50788505 CCATCGGCGT
Statistics
Matches: 140, Mismatches: 25, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
95 50 0.36
96 89 0.64
97 1 0.01
ACGTcount: A:0.28, C:0.16, G:0.29, T:0.26
Consensus pattern (96 bp):
GTGTAAGACCATGTCTGGGACATGGCATCGGTGTTAATATGTGTACTAATGTAAGACCATGTTTG
GGACATGGAATAGGCCACAGTATGAGAGCCA
Found at i:50788517 original size:48 final size:47
Alignment explanation
Indices: 50788435--50788537 Score: 134
Period size: 48 Copynumber: 2.2 Consensus size: 47
50788425 TGAGAGCCAG
* * *
50788435 TGTAAGACCATGATGGGACATGGCATCAGTGTTGATATGTGTGCTAC
1 TGTAAGACAATGATGGGACATGCCATCAGCGTTGATATGTGTGCTAC
* * * *
50788482 TGTAAGACAATGTTTGGGACATGCCATCGGCGTTGATATGTTTGCTAG
1 TGTAAGACAATG-ATGGGACATGCCATCAGCGTTGATATGTGTGCTAC
50788530 TGTAAGAC
1 TGTAAGAC
50788538 CGTGTCTGGG
Statistics
Matches: 48, Mismatches: 7, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
47 11 0.23
48 37 0.77
ACGTcount: A:0.25, C:0.15, G:0.29, T:0.31
Consensus pattern (47 bp):
TGTAAGACAATGATGGGACATGCCATCAGCGTTGATATGTGTGCTAC
Found at i:50788538 original size:95 final size:96
Alignment explanation
Indices: 50788329--50788504 Score: 264
Period size: 95 Copynumber: 1.8 Consensus size: 96
50788319 AGCCACATTT
* * *
50788329 TGAGAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGGTGTTAATATGTGTACTAGTGTAAGA
1 TGAGAGCCAGTGTAAGACCATGTATAGGACATGGCATCAGTGTTAATATGTGTACTACTGTAAGA
*
50788394 CCATGTGTGGAACATGGCCTAGGCCAGAGTA
66 CAATGTGTGGAACATGGCCTAGGCCAGAGTA
* * *
50788425 TGAGAGCCAGTGTAAGACCATG-ATGGGACATGGCATCAGTGTTGATATGTGTGCTACTGTAAGA
1 TGAGAGCCAGTGTAAGACCATGTATAGGACATGGCATCAGTGTTAATATGTGTACTACTGTAAGA
* *
50788489 CAATGTTTGGGACATG
66 CAATGTGTGGAACATG
50788505 CCATCGGCGT
Statistics
Matches: 71, Mismatches: 9, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
95 49 0.69
96 22 0.31
ACGTcount: A:0.28, C:0.15, G:0.31, T:0.26
Consensus pattern (96 bp):
TGAGAGCCAGTGTAAGACCATGTATAGGACATGGCATCAGTGTTAATATGTGTACTACTGTAAGA
CAATGTGTGGAACATGGCCTAGGCCAGAGTA
Found at i:50788553 original size:143 final size:144
Alignment explanation
Indices: 50788226--50788554 Score: 365
Period size: 143 Copynumber: 2.3 Consensus size: 144
50788216 ATGACATTTG
* * * *
50788226 GTTGATATGTGTGCTTGTGTAAGACCATGTCTGGGACATGGCATCGGCCATATTATGAGAGCCAA
1 GTTGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATAGGCCAGAGTATGAGAGCCAA
* * * * *
50788291 TGTAAGATCATGTTTGGGACATGGAATCAGCCACATTTTGAGAGCCAGTGTAAGACCATGTCTAG
66 TGTAAGACCATGTATGGGACATGGAATCAGCCACATTATGAGAGCCACTGTAAGACAATGTCTAG
* *
50788356 GACATGGCATCGGT
131 GACATGCCATCGGC
* * * * * *
50788370 GTTAATATGTGTACTAGTGTAAGACCATGTGTGGAACATGGCCTAGGCCAGAGTATGAGAGCCAG
1 GTTGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATAGGCCAGAGTATGAGAGCCAA
* **** * * * * *
50788435 TGTAAGACCATG-ATGGGACATGGCATCAGTGTTGA-TATGTGTGCTACTGTAAGACAATGTTTG
66 TGTAAGACCATGTATGGGACATGGAATCAG-CCACATTATGAGAGCCACTGTAAGACAATGTCTA
50788498 GGACATGCCATCGGC
130 GGACATGCCATCGGC
* * *
50788513 GTTGATATGTTTGCTAGTGTAAGACCGTGTCTGGGGCATGGC
1 GTTGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGC
50788555 GTCGACAATT
Statistics
Matches: 150, Mismatches: 34, Indels: 3
0.80 0.18 0.02
Matches are distributed among these distances:
143 83 0.55
144 67 0.45
ACGTcount: A:0.26, C:0.16, G:0.30, T:0.28
Consensus pattern (144 bp):
GTTGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATAGGCCAGAGTATGAGAGCCAA
TGTAAGACCATGTATGGGACATGGAATCAGCCACATTATGAGAGCCACTGTAAGACAATGTCTAG
GACATGCCATCGGC
Found at i:50791206 original size:17 final size:18
Alignment explanation
Indices: 50791180--50791213 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
50791170 ATACATCACA
50791180 ATAATAAGACAT-TAATC
1 ATAATAAGACATATAATC
*
50791197 ATAATTAGACATATAAT
1 ATAATAAGACATATAAT
50791214 TAAAACTTGA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.53, C:0.09, G:0.06, T:0.32
Consensus pattern (18 bp):
ATAATAAGACATATAATC
Found at i:50812445 original size:14 final size:14
Alignment explanation
Indices: 50812426--50812453 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
50812416 AAAGGAGGGT
50812426 TATCTTCTTCAACC
1 TATCTTCTTCAACC
50812440 TATCTTCTTCAACC
1 TATCTTCTTCAACC
50812454 GACGTGAAAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.21, C:0.36, G:0.00, T:0.43
Consensus pattern (14 bp):
TATCTTCTTCAACC
Found at i:50814424 original size:20 final size:20
Alignment explanation
Indices: 50814396--50814449 Score: 99
Period size: 20 Copynumber: 2.7 Consensus size: 20
50814386 AACAGGGGTC
*
50814396 ACACACCCGTGTGGCTTGGG
1 ACACGCCCGTGTGGCTTGGG
50814416 ACACGCCCGTGTGGCTTGGG
1 ACACGCCCGTGTGGCTTGGG
50814436 ACACGCCCGTGTGG
1 ACACGCCCGTGTGG
50814450 GTAGGCCGTG
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.13, C:0.31, G:0.37, T:0.19
Consensus pattern (20 bp):
ACACGCCCGTGTGGCTTGGG
Found at i:50816720 original size:23 final size:20
Alignment explanation
Indices: 50816663--50816704 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
50816653 GTACCTTAGC
50816663 CAAATTACCCAAAAAAATAT
1 CAAATTACCCAAAAAAATAT
50816683 CAAATTACCCAAAAAAATAT
1 CAAATTACCCAAAAAAATAT
50816703 CA
1 CA
50816705 TAAGTGTTAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.60, C:0.21, G:0.00, T:0.19
Consensus pattern (20 bp):
CAAATTACCCAAAAAAATAT
Found at i:50818672 original size:12 final size:14
Alignment explanation
Indices: 50818655--50818691 Score: 53
Period size: 12 Copynumber: 2.9 Consensus size: 14
50818645 TGGTGATATT
50818655 TATATATGT-ATA-
1 TATATATGTGATAC
50818667 TATATATGTGATAC
1 TATATATGTGATAC
50818681 TATAT-TGTGAT
1 TATATATGTGAT
50818692 TTTCGAGCTT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
12 9 0.39
13 9 0.39
14 5 0.22
ACGTcount: A:0.35, C:0.03, G:0.14, T:0.49
Consensus pattern (14 bp):
TATATATGTGATAC
Found at i:50829206 original size:30 final size:30
Alignment explanation
Indices: 50829172--50829232 Score: 79
Period size: 30 Copynumber: 2.0 Consensus size: 30
50829162 TCCTTAACTC
50829172 AAACTTTGGACA-AATTACAATTTTGCCCCT
1 AAACTTTGG-CATAATTACAATTTTGCCCCT
* * *
50829202 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGCATAATTACAATTTTGCCCCT
50829232 A
1 A
50829233 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
29 2 0.07
30 25 0.93
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGCATAATTACAATTTTGCCCCT
Found at i:50837720 original size:27 final size:26
Alignment explanation
Indices: 50837682--50837826 Score: 96
Period size: 27 Copynumber: 5.4 Consensus size: 26
50837672 GCGAGGCAGC
*
50837682 CAGATATTGTGAC-GAAGTCAACAGATA
1 CAGATATTGTGACAG-AGCCAACAGA-A
*
50837709 CAGATATTGTGACAGAGCCACCAGAA
1 CAGATATTGTGACAGAGCCAACAGAA
** *
50837735 CAGATATATGTGGTAGAGCC-ACTAGAT
1 CAGATAT-TGTGACAGAGCCAAC-AGAA
* * * *
50837762 CAGATAATTGTGGCATAGCCACCAGGA
1 CAGAT-ATTGTGACAGAGCCAACAGAA
* * * *
50837789 CAGATATATGTGGCAGAGCTACCAGAT
1 CAGATAT-TGTGACAGAGCCAACAGAA
50837816 CAGATAATTGT
1 CAGAT-ATTGT
50837827 AGCATAGCCA
Statistics
Matches: 96, Mismatches: 15, Indels: 14
0.77 0.12 0.11
Matches are distributed among these distances:
26 11 0.11
27 79 0.82
28 6 0.06
ACGTcount: A:0.36, C:0.18, G:0.24, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACAGAGCCAACAGAA
Found at i:50837784 original size:54 final size:54
Alignment explanation
Indices: 50837703--50837837 Score: 191
Period size: 54 Copynumber: 2.5 Consensus size: 54
50837693 ACGAAGTCAA
* * *
50837703 CAGATACAGAT-ATTGTGACAGAGCCACCAGAACAGATATATGTGGTAGAGCCAC
1 CAGAT-CAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGCCAC
* * *
50837757 TAGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGCTAC
1 CAGATCAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGCCAC
*
50837811 CAGATCAGATAATTGTAGCATAGCCAC
1 CAGATCAGATAATTGTGGCATAGCCAC
50837838 TAGGACGCTT
Statistics
Matches: 72, Mismatches: 8, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
53 5 0.07
54 67 0.93
ACGTcount: A:0.36, C:0.20, G:0.24, T:0.21
Consensus pattern (54 bp):
CAGATCAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGCCAC
Found at i:50838007 original size:28 final size:26
Alignment explanation
Indices: 50837946--50838008 Score: 72
Period size: 26 Copynumber: 2.3 Consensus size: 26
50837936 AAATTAACCC
* * * *
50837946 TAGGGGTACAACGGTAATTTTGCACC
1 TAGGGGTATAACAGTAATTTTCCACA
50837972 TAGGGGTATAACAGTAATTTTCCATACA
1 TAGGGGTATAACAGTAATTTTCC--ACA
50838000 TAGGGGTAT
1 TAGGGGTAT
50838009 TGTAGTAATT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
26 20 0.65
28 11 0.35
ACGTcount: A:0.30, C:0.14, G:0.25, T:0.30
Consensus pattern (26 bp):
TAGGGGTATAACAGTAATTTTCCACA
Found at i:50839498 original size:26 final size:26
Alignment explanation
Indices: 50839467--50839520 Score: 99
Period size: 26 Copynumber: 2.1 Consensus size: 26
50839457 TGAAATGCCC
50839467 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAAACCATT
*
50839493 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAAACCATT
50839519 AT
1 AT
50839521 TATTGTAACA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.37, C:0.24, G:0.07, T:0.31
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAAACCATT
Found at i:50840954 original size:40 final size:40
Alignment explanation
Indices: 50840906--50841089 Score: 183
Period size: 40 Copynumber: 4.6 Consensus size: 40
50840896 TCCTCGTTCA
* * * *
50840906 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACG
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACG
*
50840946 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACG
* * *
50840986 AATGCCTTCGGGACTTAACCCAGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACG
* ** * * * *
50841026 AAGGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCACG
* *
50841066 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
50841090 CAGCATTCAA
Statistics
Matches: 121, Mismatches: 20, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
39 3 0.02
40 110 0.91
41 8 0.07
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACG
Found at i:50841098 original size:41 final size:41
Alignment explanation
Indices: 50841021--50841098 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
50841011 TTAGTATCTC
* * *
50841021 GCACAAAGGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
50841062 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAAGGCCTTC-GGATCTTAGCCCGGACA-CATTCA
50841099 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (41 bp):
GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:50842607 original size:26 final size:26
Alignment explanation
Indices: 50842577--50842629 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
50842567 TGTCACAATT
* *
50842577 ATGGAATATTTACCTAATCCATTATC
1 ATGGAACATTTACCTAACCCATTATC
50842603 ATGGAACATTTACCTAACCCATTATC
1 ATGGAACATTTACCTAACCCATTATC
50842629 A
1 A
50842630 ATTTGTACCA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.36, C:0.23, G:0.08, T:0.34
Consensus pattern (26 bp):
ATGGAACATTTACCTAACCCATTATC
Found at i:50848875 original size:27 final size:27
Alignment explanation
Indices: 50848827--50848984 Score: 164
Period size: 27 Copynumber: 5.9 Consensus size: 27
50848817 GCAAGACTGC
* *
50848827 CAGATATTGTGAC-GAAGTCACCAGATA
1 CAGATATTGTGGCAG-AGCCACCAGATA
50848854 CAGATATTGTGGCAGAGCCACCAGA-A
1 CAGATATTGTGGCAGAGCCACCAGATA
*
50848880 CAGATATATGTGGCAGTGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
* * *
50848907 CAGATAATTGTGGCATAACCACCAG-GA
1 CAGAT-ATTGTGGCAGAGCCACCAGATA
50848934 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
* *
50848961 CAAATAATTGTGGCATAGCCACCA
1 CAGAT-ATTGTGGCAGAGCCACCA
50848985 AGACGCTTCC
Statistics
Matches: 111, Mismatches: 12, Indels: 16
0.80 0.09 0.12
Matches are distributed among these distances:
26 10 0.09
27 96 0.86
28 5 0.05
ACGTcount: A:0.35, C:0.22, G:0.23, T:0.20
Consensus pattern (27 bp):
CAGATATTGTGGCAGAGCCACCAGATA
Found at i:50848917 original size:54 final size:54
Alignment explanation
Indices: 50848845--50848984 Score: 219
Period size: 54 Copynumber: 2.6 Consensus size: 54
50848835 GTGACGAAGT
* *
50848845 CACCAGATACAGAT-ATTGTGGCAGAGCCACCAGAACAGATATATGTGGCAGTGC
1 CACCAGAT-CAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
* *
50848899 CACCAGATCAGATAATTGTGGCATAACCACCAGGACAGATATATGTGGCAGAGC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
*
50848953 CACCAGATCAAATAATTGTGGCATAGCCACCA
1 CACCAGATCAGATAATTGTGGCATAGCCACCA
50848985 AGACGCTTCC
Statistics
Matches: 79, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
53 5 0.06
54 74 0.94
ACGTcount: A:0.35, C:0.24, G:0.23, T:0.19
Consensus pattern (54 bp):
CACCAGATCAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
Found at i:50850634 original size:26 final size:26
Alignment explanation
Indices: 50850604--50850711 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
50850594 TGAAATGCCC
*
50850604 ATCATGGAACATTTACTTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
50850630 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
50850656 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
50850682 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
50850708 ATCA
1 ATCA
50850712 ATTTGTACCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.35, C:0.24, G:0.07, T:0.33
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:50856928 original size:27 final size:26
Alignment explanation
Indices: 50856890--50857048 Score: 114
Period size: 27 Copynumber: 5.9 Consensus size: 26
50856880 GCGAGGCTGC
*
50856890 CAGATATTGTGACGA-AGTCACCAGATA
1 CAGATATTGTGA-GAGAGCCACCAGA-A
*
50856917 CAGATATTGTGATAGAGCCACCAGAA
1 CAGATATTGTGAGAGAGCCACCAGAA
50856943 CAGATATATGTG-GCAGAGCCACCA-AA
1 CAGATAT-TGTGAG-AGAGCCACCAGAA
* *
50856969 TCAGATAATTGTG-GCATAGCCACCAGGA
1 -CAGAT-ATTGTGAG-AGAGCCACCAGAA
*
50856997 CAGATATATGTG-GCAGAGCCACCAGAT
1 CAGATAT-TGTGAG-AGAGCCACCAGAA
* *
50857024 CAAATAATTGTG-GCATAGCCACCAG
1 CAGAT-ATTGTGAG-AGAGCCACCAG
50857049 GACGCTTCCT
Statistics
Matches: 114, Mismatches: 10, Indels: 16
0.81 0.07 0.11
Matches are distributed among these distances:
26 13 0.11
27 96 0.84
28 5 0.04
ACGTcount: A:0.36, C:0.21, G:0.23, T:0.19
Consensus pattern (26 bp):
CAGATATTGTGAGAGAGCCACCAGAA
Found at i:50857049 original size:54 final size:54
Alignment explanation
Indices: 50856932--50857051 Score: 213
Period size: 54 Copynumber: 2.2 Consensus size: 54
50856922 ATTGTGATAG
* *
50856932 AGCCACCAGAACAGATATATGTGGCAGAGCCACCAAATCAGATAATTGTGGCAT
1 AGCCACCAGGACAGATATATGTGGCAGAGCCACCAAATCAAATAATTGTGGCAT
*
50856986 AGCCACCAGGACAGATATATGTGGCAGAGCCACCAGATCAAATAATTGTGGCAT
1 AGCCACCAGGACAGATATATGTGGCAGAGCCACCAAATCAAATAATTGTGGCAT
50857040 AGCCACCAGGAC
1 AGCCACCAGGAC
50857052 GCTTCCTCCA
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
54 63 1.00
ACGTcount: A:0.36, C:0.24, G:0.23, T:0.17
Consensus pattern (54 bp):
AGCCACCAGGACAGATATATGTGGCAGAGCCACCAAATCAAATAATTGTGGCAT
Found at i:50858678 original size:26 final size:26
Alignment explanation
Indices: 50858647--50858754 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
50858637 TGAAATGCCC
*
50858647 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
50858673 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
50858699 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
50858725 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
50858751 ATCA
1 ATCA
50858755 ATTTGTACCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.36, C:0.24, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:50860290 original size:25 final size:25
Alignment explanation
Indices: 50860231--50860293 Score: 72
Period size: 25 Copynumber: 2.5 Consensus size: 25
50860221 GACCCACAAC
* * *
50860231 TTGTGTGAGCATACCAATTTATAGC
1 TTGTGTGAGCATACCAATCTACAGA
* * *
50860256 TCGTGAGAGCATACCGATCTACAGA
1 TTGTGTGAGCATACCAATCTACAGA
50860281 TTGTGTGAGCATA
1 TTGTGTGAGCATA
50860294 TATACCGATT
Statistics
Matches: 30, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
25 30 1.00
ACGTcount: A:0.29, C:0.17, G:0.24, T:0.30
Consensus pattern (25 bp):
TTGTGTGAGCATACCAATCTACAGA
Found at i:50860320 original size:29 final size:29
Alignment explanation
Indices: 50860266--50860322 Score: 71
Period size: 29 Copynumber: 2.0 Consensus size: 29
50860256 TCGTGAGAGC
*
50860266 ATACCGATCTACAGATTGTGTGAGCATAT
1 ATACCGATCTACAGATCGTGTGAGCATAT
* *
50860295 ATACCGATTTACAGCTCGTGAT-AGCATA
1 ATACCGATCTACAGATCGTG-TGAGCATA
50860323 CCGATCTATA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 23 0.96
30 1 0.04
ACGTcount: A:0.32, C:0.19, G:0.19, T:0.30
Consensus pattern (29 bp):
ATACCGATCTACAGATCGTGTGAGCATAT
Found at i:50860323 original size:25 final size:25
Alignment explanation
Indices: 50860238--50860337 Score: 76
Period size: 25 Copynumber: 3.8 Consensus size: 25
50860228 AACTTGTGTG
* * * *
50860238 AGCATACCAATTTATAGCTCGTGAG
1 AGCATACCGATCTACAGCTCGTGAT
* *
50860263 AGCATACCGATCTACAGATTGTG-T
1 AGCATACCGATCTACAGCTCGTGAT
*
50860287 GAGCATATATACCGATTTACAGCTCGTGAT
1 -AGC----ATACCGATCTACAGCTCGTGAT
*
50860317 AGCATACCGATCTATAGCTCG
1 AGCATACCGATCTACAGCTCG
50860338 AGTAAGCATA
Statistics
Matches: 58, Mismatches: 11, Indels: 12
0.72 0.14 0.15
Matches are distributed among these distances:
25 37 0.64
29 20 0.34
30 1 0.02
ACGTcount: A:0.30, C:0.22, G:0.20, T:0.28
Consensus pattern (25 bp):
AGCATACCGATCTACAGCTCGTGAT
Found at i:50860345 original size:25 final size:25
Alignment explanation
Indices: 50860295--50860348 Score: 65
Period size: 25 Copynumber: 2.2 Consensus size: 25
50860285 GTGAGCATAT
* *
50860295 ATACCGATTTACAGCTCGTGATAGC
1 ATACCGATCTACAGCTCGAGATAGC
*
50860320 ATACCGATCTATAGCTCGAG-TAAGC
1 ATACCGATCTACAGCTCGAGAT-AGC
50860345 ATAC
1 ATAC
50860349 AGGTTCACAA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
24 1 0.04
25 24 0.96
ACGTcount: A:0.31, C:0.24, G:0.19, T:0.26
Consensus pattern (25 bp):
ATACCGATCTACAGCTCGAGATAGC
Found at i:50860346 original size:54 final size:54
Alignment explanation
Indices: 50860241--50860347 Score: 142
Period size: 54 Copynumber: 2.0 Consensus size: 54
50860231 TTGTGTGAGC
* * * *
50860241 ATACCAATTTATAGCTCGTGAGAGCATACCGATCTACAGATTGTGTGAGCATAT
1 ATACCAATTTACAGCTCGTGAGAGCATACCGATCTACAGATCGAGTAAGCATAT
* * * *
50860295 ATACCGATTTACAGCTCGTGATAGCATACCGATCTATAGCTCGAGTAAGCATA
1 ATACCAATTTACAGCTCGTGAGAGCATACCGATCTACAGATCGAGTAAGCATA
50860348 CAGGTTCACA
Statistics
Matches: 45, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
54 45 1.00
ACGTcount: A:0.32, C:0.21, G:0.20, T:0.28
Consensus pattern (54 bp):
ATACCAATTTACAGCTCGTGAGAGCATACCGATCTACAGATCGAGTAAGCATAT
Found at i:50861501 original size:20 final size:20
Alignment explanation
Indices: 50861468--50861506 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
50861458 ACCATATGAT
50861468 TTGGCTTGTGTTATAGTATC
1 TTGGCTTGTGTTATAGTATC
*
50861488 TTGG-TTGTGATTATGGTAT
1 TTGGCTTGTG-TTATAGTAT
50861507 TTTGAATGAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 5 0.29
20 12 0.71
ACGTcount: A:0.15, C:0.05, G:0.28, T:0.51
Consensus pattern (20 bp):
TTGGCTTGTGTTATAGTATC
Found at i:50862693 original size:18 final size:18
Alignment explanation
Indices: 50862654--50862695 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
50862644 ACTGATCCCA
50862654 TACAAAATTTTTCGAAGC
1 TACAAAATTTTTCGAAGC
* * *
50862672 TACACAATTTTTCTAAGT
1 TACAAAATTTTTCGAAGC
50862690 TACAAA
1 TACAAA
50862696 GGTCATACAC
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.40, C:0.17, G:0.07, T:0.36
Consensus pattern (18 bp):
TACAAAATTTTTCGAAGC
Found at i:50864031 original size:43 final size:42
Alignment explanation
Indices: 50863998--50864079 Score: 119
Period size: 42 Copynumber: 1.9 Consensus size: 42
50863988 TTATATGTAA
* *
50863998 TCAAATATCAATGCCACTGTCCCAGACAGGGTCTTACACGAAG
1 TCAAATAT-AATGCCAATGTCCCAAACAGGGTCTTACACGAAG
* *
50864041 TCAAATATGATGCCAATGTCCCAAACATGGTCTTACACG
1 TCAAATATAATGCCAATGTCCCAAACAGGGTCTTACACG
50864080 TAAATCTCAA
Statistics
Matches: 35, Mismatches: 4, Indels: 1
0.88 0.10 0.03
Matches are distributed among these distances:
42 27 0.77
43 8 0.23
ACGTcount: A:0.33, C:0.27, G:0.17, T:0.23
Consensus pattern (42 bp):
TCAAATATAATGCCAATGTCCCAAACAGGGTCTTACACGAAG
Found at i:50864106 original size:44 final size:43
Alignment explanation
Indices: 50863965--50864131 Score: 146
Period size: 44 Copynumber: 3.9 Consensus size: 43
50863955 AACTCGTAAA
** * * * *
50863965 ATGCCAACGTCCCAGATGTGGTCTTATATGTAATC-AAATATCA
1 ATGCCAACGTCCCAGACATGGTCTTACACGTAATCTCAA-ATCG
* * *
50864008 ATGCC-ACTGTCCCAGACAGGGTCTTACACG-AA-GTCAAATATG
1 ATGCCAAC-GTCCCAGACATGGTCTTACACGTAATCTCAAAT-CG
* *
50864050 ATGCCAATGTCCCAAACATGGTCTTACACGTAAATCTCAAATCG
1 ATGCCAACGTCCCAGACATGGTCTTACACGT-AATCTCAAATCG
*
50864094 ATGCCAACGTCCCAGACTTGGTCTTACACGATAA-CTCA
1 ATGCCAACGTCCCAGACATGGTCTTACACG-TAATCTCA
50864132 TATTGGAATC
Statistics
Matches: 99, Mismatches: 17, Indels: 16
0.75 0.13 0.12
Matches are distributed among these distances:
41 2 0.02
42 31 0.31
43 27 0.27
44 32 0.32
45 7 0.07
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.25
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACATGGTCTTACACGTAATCTCAAATCG
Found at i:50890201 original size:40 final size:40
Alignment explanation
Indices: 50890148--50890393 Score: 143
Period size: 39 Copynumber: 6.2 Consensus size: 40
50890138 CCTTTGGAAT
* *
50890148 TTAA-CCGGATATAGCT-CCTCATTCAAATGCCTTCGGGAC
1 TTAACCCGGATATAG-TAACTCATACAAATGCCTTCGGGAC
* * * *
50890187 TTAGCCCGGTTATAGTAATTCGTACAAATGCCTTCGGGAC
1 TTAACCCGGATATAGTAACTCATACAAATGCCTTCGGGAC
* ** * *
50890227 TTAACCCGGATTTAGTAACTCGCACAAATGCCTTCAGG-T
1 TTAACCCGGATATAGTAACTCATACAAATGCCTTCGGGAC
* * * **
50890266 TTAGCCC-GAAATTAGTATCTCGCACAAATGCCTTCGGG-C
1 TTAACCCGGATA-TAGTAACTCATACAAATGCCTTCGGGAC
* * **
50890305 TTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATC
1 TTAACCCGGATA-TAGTAACTCATACAAATGCCTTCGGGA-C
** * *
50890345 TTAGTCCGGATATGGTCACT--TAGCACAA-GCCTTCGGGAC
1 TTAACCCGGATATAGTAACTCATA-CA-AATGCCTTCGGGAC
*
50890384 TTAGCCCGGA
1 TTAACCCGGA
50890394 CAGCATTCAA
Statistics
Matches: 172, Mismatches: 25, Indels: 20
0.79 0.12 0.09
Matches are distributed among these distances:
38 5 0.03
39 84 0.49
40 82 0.48
41 1 0.01
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.27
Consensus pattern (40 bp):
TTAACCCGGATATAGTAACTCATACAAATGCCTTCGGGAC
Found at i:50890289 original size:39 final size:39
Alignment explanation
Indices: 50890171--50890341 Score: 220
Period size: 39 Copynumber: 4.3 Consensus size: 39
50890161 GCTCCTCATT
* *
50890171 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAAT-TCGTA
1 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGT-ATCTCGCA
* * *
50890211 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
* * *
50890251 CAAATGCCTTCAGGTTTAGCCCGAAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
50890290 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
50890329 CAAATGCCTTCGG
1 CAAATGCCTTCGG
50890342 ATCTTAGTCC
Statistics
Matches: 117, Mismatches: 12, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
39 70 0.60
40 45 0.38
41 2 0.02
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.27
Consensus pattern (39 bp):
CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
Found at i:50890377 original size:78 final size:79
Alignment explanation
Indices: 50890210--50890393 Score: 218
Period size: 78 Copynumber: 2.3 Consensus size: 79
50890200 AGTAATTCGT
* *
50890210 ACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGCCTTCAGGTTTAGCCCGA
1 ACAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCAGGTTTAGCCCGA
*
50890275 AATTAGTATCTCGC
66 AATTAGTATCTAGC
* *
50890289 ACAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCC
1 ACAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCAGG-T-TTAGCCC
* *
50890352 G-GATATGGTCA-CTTAGC
64 GAAAT-TAGT-ATC-TAGC
50890369 AC-AA-GCCTTCGGGACTTAGCCCGGA
1 ACAAATGCCTTCGGGACTTAGCCCGGA
50890394 CAGCATTCAA
Statistics
Matches: 92, Mismatches: 7, Indels: 12
0.83 0.06 0.11
Matches are distributed among these distances:
77 2 0.02
78 45 0.49
79 39 0.42
80 6 0.07
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.26
Consensus pattern (79 bp):
ACAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCAGGTTTAGCCCGA
AATTAGTATCTAGC
Found at i:50890388 original size:118 final size:119
Alignment explanation
Indices: 50890171--50890391 Score: 265
Period size: 118 Copynumber: 1.9 Consensus size: 119
50890161 GCTCCTCATT
* *
50890171 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAATTCGTACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCGG
* * *
50890236 ATTTAGTAACTCGCACAAATGCCTTCAGGTTTAGCCCGAAATTAGTATCTCGCA
66 ATATAGTAACTAGCACAAATGCCTTCAGGCTTAGCCCGAAATTAGTATCTCGCA
**
50890290 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGT-ATCTCGCACAAATGCCTTC-GGATCTTAGTC
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAAT-TCGCACAAATGCCTTCGGGA-CTTAACC
* * *
50890351 CGGATATGGTCACTTAGCAC-AA-GCCTTCGGGACTTAGCCCG
63 CGGATATAGTAAC-TAGCACAAATGCCTTCAGG-CTTAGCCCG
50890392 GACAGCATTC
Statistics
Matches: 87, Mismatches: 10, Indels: 11
0.81 0.09 0.10
Matches are distributed among these distances:
117 14 0.16
118 54 0.62
119 19 0.22
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.27
Consensus pattern (119 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCGG
ATATAGTAACTAGCACAAATGCCTTCAGGCTTAGCCCGAAATTAGTATCTCGCA
Found at i:50898161 original size:39 final size:40
Alignment explanation
Indices: 50898044--50898267 Score: 266
Period size: 39 Copynumber: 5.7 Consensus size: 40
50898034 GCTCCTCGTT
*
50898044 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCA
** * *
50898084 CAAATGCCTTCGGGACTTAATCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
50898124 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
50898163 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* * *
50898202 CAAATGCCTTC-GGATCTTAGTCCGG-ATATGGTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGAAT-TAGT-ATC-TCGCA
50898243 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
50898268 CAGCATTCAA
Statistics
Matches: 164, Mismatches: 11, Indels: 17
0.85 0.06 0.09
Matches are distributed among these distances:
38 2 0.01
39 74 0.45
40 74 0.45
41 14 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:50898226 original size:118 final size:120
Alignment explanation
Indices: 50898044--50898267 Score: 316
Period size: 118 Copynumber: 1.9 Consensus size: 120
50898034 GCTCCTCGTT
*
50898044 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAATTCGCACAAATGCCTTCGGGACTTAATCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAATTCGCACAAATGCCTTCGGGACTTAATCCGG
* *
50898109 ATTTAGTAAC-TCGCACAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
66 ATATAGTAACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
*
50898163 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGT-ATCTCGCACAAATGCCTTC-GGATCTTAGTC
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAAT-TCGCACAAATGCCTTCGGGA-CTTAATC
* *
50898224 CGGATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
63 CGGATATAGTAACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
50898268 CAGCATTCAA
Statistics
Matches: 94, Mismatches: 6, Indels: 10
0.85 0.05 0.09
Matches are distributed among these distances:
117 6 0.06
118 55 0.59
119 33 0.35
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.26
Consensus pattern (120 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAATTCGCACAAATGCCTTCGGGACTTAATCCGG
ATATAGTAACTTAGCACAAAGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:50898267 original size:40 final size:39
Alignment explanation
Indices: 50898044--50898267 Score: 253
Period size: 40 Copynumber: 5.7 Consensus size: 39
50898034 GCTCCTCGTT
*
50898044 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAATTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGT-ATTCGCA
** * *
50898084 CAAATGCCTTCGGGACTTAATCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGT-ATTCGCA
50898124 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAT-TCGCA
50898163 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAT-TCGCA
* * *
50898202 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGT-A-TTCGCA
50898243 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
50898268 CAGCATTCAA
Statistics
Matches: 163, Mismatches: 13, Indels: 16
0.85 0.07 0.08
Matches are distributed among these distances:
38 3 0.02
39 68 0.42
40 78 0.48
41 13 0.08
42 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.26
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTATTCGCA
Done.