Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100714657
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 3970000 characters in sequence are not A, C, G, or T
File 161 of 318
Found at i:50901589 original size:42 final size:42
Alignment explanation
Indices: 50901530--50901612 Score: 157
Period size: 42 Copynumber: 2.0 Consensus size: 42
50901520 TGGCTATGTA
*
50901530 TGATGATGGTTCGATAATAGCTGATTTGAAAGCAAGATCGTC
1 TGATGATGGTTCGATAATAGCTGAATTGAAAGCAAGATCGTC
50901572 TGATGATGGTTCGATAATAGCTGAATTGAAAGCAAGATCGT
1 TGATGATGGTTCGATAATAGCTGAATTGAAAGCAAGATCGT
50901613 TATTTATTCA
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 40 1.00
ACGTcount: A:0.33, C:0.11, G:0.27, T:0.30
Consensus pattern (42 bp):
TGATGATGGTTCGATAATAGCTGAATTGAAAGCAAGATCGTC
Found at i:50906320 original size:47 final size:47
Alignment explanation
Indices: 50906238--50906831 Score: 954
Period size: 47 Copynumber: 12.6 Consensus size: 47
50906228 TTAAACCCAT
*
50906238 ATGTGAAAGTGTATATATATGTGATAAGGCTTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
**
50906287 ATGTGAAAGTGTATATGCGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
50906334 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
50906381 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
**
50906428 ATGTGAAAGTGTATATGCGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
50906475 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
50906522 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
50906569 ATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
50906616 ATGTGAAAGTGTATATATATGTGATAAGGCTTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
** *
50906665 ATGTGAAAGTGTATATGCGTGATAAGGCTTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
** *
50906712 ATGTGAAAGTGTATATGCGTGATAAGGCTTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * *
50906759 ATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAATGTGATGG
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
50906806 ATGTGAAAGTGCATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
50906832 TCCCGAAGGG
Statistics
Matches: 514, Mismatches: 29, Indels: 6
0.94 0.05 0.01
Matches are distributed among these distances:
47 459 0.89
49 55 0.11
ACGTcount: A:0.31, C:0.08, G:0.31, T:0.29
Consensus pattern (47 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:50907006 original size:37 final size:37
Alignment explanation
Indices: 50906952--50907027 Score: 107
Period size: 37 Copynumber: 2.1 Consensus size: 37
50906942 GAGTTCTAAG
* * * *
50906952 GACCCGATGACTACGTGTGGGGATTTTGTCCGGGTAA
1 GACCCGATAACTACGTGTGGAGATTATGTCCAGGTAA
*
50906989 GACCCGATAACTTCGTGTGGAGATTATGTCCAGGTAA
1 GACCCGATAACTACGTGTGGAGATTATGTCCAGGTAA
50907026 GA
1 GA
50907028 TTTCGTAATA
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
37 34 1.00
ACGTcount: A:0.24, C:0.18, G:0.32, T:0.26
Consensus pattern (37 bp):
GACCCGATAACTACGTGTGGAGATTATGTCCAGGTAA
Found at i:50912411 original size:30 final size:30
Alignment explanation
Indices: 50912366--50912424 Score: 100
Period size: 30 Copynumber: 2.0 Consensus size: 30
50912356 GCCTTCCCTT
*
50912366 CCCATTATTGATGCTTAAAGGGAAGGATAA
1 CCCATGATTGATGCTTAAAGGGAAGGATAA
*
50912396 CCCATGATTGGTGCTTAAAGGGAAGGATA
1 CCCATGATTGATGCTTAAAGGGAAGGATA
50912425 GCGACTTGTG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.34, C:0.14, G:0.27, T:0.25
Consensus pattern (30 bp):
CCCATGATTGATGCTTAAAGGGAAGGATAA
Found at i:50914460 original size:39 final size:39
Alignment explanation
Indices: 50914402--50914524 Score: 147
Period size: 39 Copynumber: 3.2 Consensus size: 39
50914392 TATCATATCC
* **
50914402 AGAATACGGAGGTATATTTTGCTGAAAACTGCTTGAGCG
1 AGAATACGGAGATGGATTTTGCTGAAAACTGCTTGAGCG
* * ** **
50914441 AGAATAGGGAGATGGATTTTGCTTAAAACTGCCAGATTG
1 AGAATACGGAGATGGATTTTGCTGAAAACTGCTTGAGCG
**
50914480 AGAATACGGAGATGGATCCTGCTGAAAACTGCTTGAGCG
1 AGAATACGGAGATGGATTTTGCTGAAAACTGCTTGAGCG
50914519 AGAATA
1 AGAATA
50914525 AGACTTCGGG
Statistics
Matches: 67, Mismatches: 17, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
39 67 1.00
ACGTcount: A:0.33, C:0.13, G:0.28, T:0.25
Consensus pattern (39 bp):
AGAATACGGAGATGGATTTTGCTGAAAACTGCTTGAGCG
Found at i:50923092 original size:18 final size:18
Alignment explanation
Indices: 50923043--50923094 Score: 77
Period size: 18 Copynumber: 2.9 Consensus size: 18
50923033 CATTGAAGTG
* *
50923043 TTTCAATGAAAACATTGT
1 TTTCATTGAAAACCTTGT
*
50923061 TTTCATTAAAAACCTTGT
1 TTTCATTGAAAACCTTGT
50923079 TTTCATTGAAAACCTT
1 TTTCATTGAAAACCTT
50923095 TCCTTAAAAA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 30 1.00
ACGTcount: A:0.35, C:0.15, G:0.08, T:0.42
Consensus pattern (18 bp):
TTTCATTGAAAACCTTGT
Found at i:50924803 original size:14 final size:15
Alignment explanation
Indices: 50924784--50924816 Score: 59
Period size: 14 Copynumber: 2.3 Consensus size: 15
50924774 ATATTTAACT
50924784 TGTTCTTAATT-ATG
1 TGTTCTTAATTCATG
50924798 TGTTCTTAATTCATG
1 TGTTCTTAATTCATG
50924813 TGTT
1 TGTT
50924817 GATATTCCAG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 11 0.61
15 7 0.39
ACGTcount: A:0.18, C:0.09, G:0.15, T:0.58
Consensus pattern (15 bp):
TGTTCTTAATTCATG
Found at i:50928186 original size:14 final size:15
Alignment explanation
Indices: 50928167--50928196 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
50928157 GTTTATTATA
50928167 TGTG-AAGTATCATG
1 TGTGAAAGTATCATG
50928181 TGTGAAAGTATCATG
1 TGTGAAAGTATCATG
50928196 T
1 T
50928197 CTAAATTTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.27
15 11 0.73
ACGTcount: A:0.30, C:0.07, G:0.27, T:0.37
Consensus pattern (15 bp):
TGTGAAAGTATCATG
Found at i:50928435 original size:31 final size:31
Alignment explanation
Indices: 50928381--50928441 Score: 79
Period size: 31 Copynumber: 2.0 Consensus size: 31
50928371 ATTATATGCA
* *
50928381 TTTTATATATAAGAAATATAATTATTAAAAG
1 TTTTATATATAAGAAATAGAATTAATAAAAG
*
50928412 TTTTATA-ATATGAAATAAGAATTAATAAAA
1 TTTTATATATAAGAAAT-AGAATTAATAAAA
50928442 CAAAAAGGGG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
30 8 0.31
31 18 0.69
ACGTcount: A:0.54, C:0.00, G:0.07, T:0.39
Consensus pattern (31 bp):
TTTTATATATAAGAAATAGAATTAATAAAAG
Found at i:50931045 original size:37 final size:38
Alignment explanation
Indices: 50930982--50931100 Score: 136
Period size: 37 Copynumber: 3.1 Consensus size: 38
50930972 TTTAAGTTCA
* *
50930982 GATATAATACTAGCACTAGGCTTGCGGGACTTTAA-CCG
1 GATATAATAC-AGCACTAAGCCTGCGGGACTTTAACCCG
*
50931020 GATATAATACAGCACGAAGCCTGCGGGA-TTTAACCCG
1 GATATAATACAGCACTAAGCCTGCGGGACTTTAACCCG
* *
50931057 GATATAATTCCAGCA-TATAGCCTGCGGGTCTTTAAGCCCG
1 GATATAA-TACAGCACTA-AGCCTGCGGGACTTTAA-CCCG
50931097 GATA
1 GATA
50931101 CACATCAAAT
Statistics
Matches: 70, Mismatches: 6, Indels: 8
0.83 0.07 0.10
Matches are distributed among these distances:
36 5 0.07
37 26 0.37
38 26 0.37
39 5 0.07
40 8 0.11
ACGTcount: A:0.29, C:0.23, G:0.24, T:0.24
Consensus pattern (38 bp):
GATATAATACAGCACTAAGCCTGCGGGACTTTAACCCG
Found at i:50933581 original size:43 final size:43
Alignment explanation
Indices: 50933506--50933704 Score: 206
Period size: 43 Copynumber: 4.7 Consensus size: 43
50933496 GCTGGTGAAT
* * * * *
50933506 AATATTATAGGGCTTCGGGCC-AGCAGGTTATAATACCGGTGA
1 AATAATATCGGGCTTCGAGCCTAGCAGGCTATAATGCCGGTGA
*
50933548 GATAATATCGGGCTTCGAGCCTAGCAGGCTATAATGCCGGTGA
1 AATAATATCGGGCTTCGAGCCTAGCAGGCTATAATGCCGGTGA
* * * ** *
50933591 AATGATATCGGGCTTCAAGTCTAGCAGGCT-TCGTGCAGGTGA
1 AATAATATCGGGCTTCGAGCCTAGCAGGCTATAATGCCGGTGA
* * *
50933633 GATAATATCAGGCTTCGAGCCTAGCTA-GTTATAATGCCGGTGA
1 AATAATATCGGGCTTCGAGCCTAGC-AGGCTATAATGCCGGTGA
* * *
50933676 AATGATATCAGGCTTCAAGCCTAGCAGGC
1 AATAATATCGGGCTTCGAGCCTAGCAGGC
50933705 GAAATGTCGA
Statistics
Matches: 127, Mismatches: 26, Indels: 7
0.79 0.16 0.04
Matches are distributed among these distances:
42 49 0.39
43 78 0.61
ACGTcount: A:0.27, C:0.20, G:0.28, T:0.25
Consensus pattern (43 bp):
AATAATATCGGGCTTCGAGCCTAGCAGGCTATAATGCCGGTGA
Found at i:50933632 original size:85 final size:85
Alignment explanation
Indices: 50933543--50933704 Score: 272
Period size: 85 Copynumber: 1.9 Consensus size: 85
50933533 TTATAATACC
* *
50933543 GGTGAGATAATATCGGGCTTCGAGCCTAGC-AGGCTATAATGCCGGTGAAATGATATCGGGCTTC
1 GGTGAGATAATATCAGGCTTCGAGCCTAGCTA-GCTATAATGCCGGTGAAATGATATCAGGCTTC
*
50933607 AAGTCTAGCAGGCTTCGTGCA
65 AAGCCTAGCAGGCTTCGTGCA
*
50933628 GGTGAGATAATATCAGGCTTCGAGCCTAGCTAGTTATAATGCCGGTGAAATGATATCAGGCTTCA
1 GGTGAGATAATATCAGGCTTCGAGCCTAGCTAGCTATAATGCCGGTGAAATGATATCAGGCTTCA
50933693 AGCCTAGCAGGC
66 AGCCTAGCAGGC
50933705 GAAATGTCGA
Statistics
Matches: 72, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
85 71 0.99
86 1 0.01
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.25
Consensus pattern (85 bp):
GGTGAGATAATATCAGGCTTCGAGCCTAGCTAGCTATAATGCCGGTGAAATGATATCAGGCTTCA
AGCCTAGCAGGCTTCGTGCA
Found at i:50933698 original size:128 final size:125
Alignment explanation
Indices: 50933516--50933758 Score: 310
Period size: 128 Copynumber: 1.9 Consensus size: 125
50933506 AATATTATAG
* * * * *
50933516 GGCTTCGGGCCAGCAGGTTATAATACCGGTGAGATAATATCGGGCTTCGAGCCTAGCAGGCTATA
1 GGCTTCGAGCCAGCAGGTTATAATACCGGTGAAATAATATCAGGCTTCAAGCCTAGCAGGCGA-A
* * * *
50933581 ATGCCGGTGAAATGA-TATCGGGCTTCAAGTCTAGCAGGCTTCGTGCAGGTGAGATAATATCA
65 ATGCCGATG-AATGAGT-TCAGACTTAAAGTCTAGCAGGCTTCGTGCAGGTGAGATAATATCA
* *
50933643 GGCTTCGAGCCTAGCTA-GTTATAATGCCGGTGAAATGATATCAGGCTTCAAGCCTAGCAGGCGA
1 GGCTTCGAGCC-AGC-AGGTTATAATACCGGTGAAATAATATCAGGCTTCAAGCCTAGCAGGCGA
* *
50933707 AATGTCGATGAATGAGTTCAGACTTAAAGTCTAGCAGGCTTCGTGCCGGTGA
64 AATGCCGATGAATGAGTTCAGACTTAAAGTCTAGCAGGCTTCGTGCAGGTGA
50933759 TGAATTCAGG
Statistics
Matches: 100, Mismatches: 13, Indels: 7
0.83 0.11 0.06
Matches are distributed among these distances:
126 36 0.36
127 19 0.19
128 44 0.44
129 1 0.01
ACGTcount: A:0.26, C:0.20, G:0.29, T:0.25
Consensus pattern (125 bp):
GGCTTCGAGCCAGCAGGTTATAATACCGGTGAAATAATATCAGGCTTCAAGCCTAGCAGGCGAAA
TGCCGATGAATGAGTTCAGACTTAAAGTCTAGCAGGCTTCGTGCAGGTGAGATAATATCA
Found at i:50941393 original size:79 final size:80
Alignment explanation
Indices: 50941255--50941478 Score: 244
Period size: 79 Copynumber: 2.8 Consensus size: 80
50941245 TGAATGATGT
* * * * *
50941255 CCGGGCTAAGTCCCGAAGGCTTTGTGCTA--AGTGACCATATCCGGACTAAGAT-CCGAAGGCAT
1 CCGGGCTAAGTCCCGAAGGCATTG-G-TACGAGTTACTATAACCGGGCTAAG-TCCCGAAGGCAT
*
50941317 TTGTGTGAGTTACTAATT-
63 TTGTGCGAGTTACT-ATTA
* * * *
50941335 CCGGGCTAAG-CCCGAAGGCATTGGTACGGGTTACT-TAATCTGGGTTAAGTCCCGAAGGCATTC
1 CCGGGCTAAGTCCCGAAGGCATTGGTACGAGTTACTATAA-CCGGGCTAAGTCCCGAAGGCATTT
50941398 GTGCGAGTTACTATTA
65 GTGCGAGTTACTATTA
* * *
50941414 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTGGTACGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTG
50941479 AACGAGTAGC
Statistics
Matches: 120, Mismatches: 17, Indels: 14
0.79 0.11 0.09
Matches are distributed among these distances:
77 2 0.02
78 7 0.06
79 55 0.46
80 53 0.44
81 3 0.03
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.26
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTGGTACGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTG
TGCGAGTTACTATTA
Found at i:50941492 original size:40 final size:40
Alignment explanation
Indices: 50941255--50941478 Score: 242
Period size: 40 Copynumber: 5.6 Consensus size: 40
50941245 TGAATGATGT
* * * *
50941255 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
50941295 CCGGACTAAGAT-CCGAAGGCATTTGTGTGAGTTACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
* * *
50941335 CCGGGCTAAG-CCCGAAGGCATTGGTACGGGTTACT-TAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
* * * *
50941373 TCTGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTATTA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
50941414 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
50941454 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
50941479 AACGAGTAGC
Statistics
Matches: 154, Mismatches: 22, Indels: 16
0.80 0.11 0.08
Matches are distributed among these distances:
39 30 0.19
40 115 0.75
41 9 0.06
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:50949624 original size:40 final size:40
Alignment explanation
Indices: 50949387--50949610 Score: 278
Period size: 40 Copynumber: 5.6 Consensus size: 40
50949377 TGAATGATGT
* * * *
50949387 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
50949427 CCGGACTAA-TATCCGAAGGCATTTGTGCGAGTTACTA-ATT
1 CCGGGCTAAGT-CCCGAAGGCATTTGTGCGAGTTACTATA-A
*
50949467 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
* *
50949505 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
50949546 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
50949586 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
50949611 AACGAGTAGC
Statistics
Matches: 163, Mismatches: 14, Indels: 14
0.85 0.07 0.07
Matches are distributed among these distances:
39 36 0.22
40 118 0.72
41 9 0.06
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:50956566 original size:55 final size:55
Alignment explanation
Indices: 50956459--50956596 Score: 145
Period size: 55 Copynumber: 2.5 Consensus size: 55
50956449 TGGCTGTAGG
* * * *
50956459 CGAAACTGCCAAAA-CAACACGGGCATTAGACACGCCCGTGCCTTGAAACCATGGT
1 CGAAACTG-CAAAATGAACACGGGCATGAGACACGCCCGTGCCCTCAAACCATGGT
* * * * *
50956514 TGAAACTG-AGAATGGAACACGGGCATGAGACACGCCTGTGCCCTCCACCCATGGT
1 CGAAACTGCAAAAT-GAACACGGGCATGAGACACGCCCGTGCCCTCAAACCATGGT
*
50956569 CGACACTGTCAAAATGAACACGGGCATG
1 CGAAACTG-CAAAATGAACACGGGCATG
50956597 GACCTATGTA
Statistics
Matches: 67, Mismatches: 12, Indels: 7
0.78 0.14 0.08
Matches are distributed among these distances:
53 3 0.04
55 47 0.70
56 13 0.19
57 4 0.06
ACGTcount: A:0.31, C:0.29, G:0.25, T:0.15
Consensus pattern (55 bp):
CGAAACTGCAAAATGAACACGGGCATGAGACACGCCCGTGCCCTCAAACCATGGT
Found at i:50958490 original size:22 final size:24
Alignment explanation
Indices: 50958440--50958491 Score: 67
Period size: 23 Copynumber: 2.3 Consensus size: 24
50958430 ATGTTGTTCC
50958440 TTTTA-TTTTCATTTAAGACTACT
1 TTTTATTTTTCATTTAAGACTACT
50958463 TTTTATTTTTC-TTTAAG-CTTA-T
1 TTTTATTTTTCATTTAAGAC-TACT
50958485 TTTTATT
1 TTTTATT
50958492 AGGTTTTATA
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
22 9 0.33
23 13 0.48
24 5 0.19
ACGTcount: A:0.21, C:0.10, G:0.04, T:0.65
Consensus pattern (24 bp):
TTTTATTTTTCATTTAAGACTACT
Found at i:50962067 original size:29 final size:29
Alignment explanation
Indices: 50962034--50962128 Score: 122
Period size: 29 Copynumber: 3.3 Consensus size: 29
50962024 AGACCTAACT
*
50962034 ATATTTACATGGCCCATTAGGCCCAAATC
1 ATATTTATATGGCCCATTAGGCCCAAATC
* *
50962063 ATATTTATATGGCCCTTTATGCCCAAATC
1 ATATTTATATGGCCCATTAGGCCCAAATC
* *
50962092 ACATTTATGTGGCCCA-TAGGCCCAAATC
1 ATATTTATATGGCCCATTAGGCCCAAATC
*
50962120 ACA-TTATAT
1 ATATTTATAT
50962129 TCATCCTCAC
Statistics
Matches: 58, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
27 5 0.09
28 14 0.24
29 39 0.67
ACGTcount: A:0.31, C:0.25, G:0.13, T:0.32
Consensus pattern (29 bp):
ATATTTATATGGCCCATTAGGCCCAAATC
Found at i:50962365 original size:16 final size:16
Alignment explanation
Indices: 50962346--50962382 Score: 65
Period size: 16 Copynumber: 2.3 Consensus size: 16
50962336 AAACTTTCAG
50962346 CTTTTCAGCATTTCGA
1 CTTTTCAGCATTTCGA
*
50962362 CTTTTCGGCATTTCGA
1 CTTTTCAGCATTTCGA
50962378 CTTTT
1 CTTTT
50962383 GCCGATCTAC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.14, C:0.24, G:0.14, T:0.49
Consensus pattern (16 bp):
CTTTTCAGCATTTCGA
Found at i:50971391 original size:27 final size:27
Alignment explanation
Indices: 50971342--50971393 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 27
50971332 AGTACCCCTA
* ***
50971342 ATTTACAGAATTACCGTTTTACCCTCG
1 ATTTACAAAATTACCGAAATACCCTCG
50971369 ATTTACAAAATTACCGAAATACCCT
1 ATTTACAAAATTACCGAAATACCCT
50971394 TGTAGGGTAG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 21 1.00
ACGTcount: A:0.35, C:0.25, G:0.08, T:0.33
Consensus pattern (27 bp):
ATTTACAAAATTACCGAAATACCCTCG
Found at i:50971410 original size:27 final size:27
Alignment explanation
Indices: 50971380--50971457 Score: 147
Period size: 27 Copynumber: 2.9 Consensus size: 27
50971370 TTTACAAAAT
50971380 TACCGAAATACCCTTGTAGGGTAGAAA
1 TACCGAAATACCCTTGTAGGGTAGAAA
50971407 TACCGAAATACCCTTGTAGGGTAGAAA
1 TACCGAAATACCCTTGTAGGGTAGAAA
*
50971434 TACCGAAATACCCCTGTAGGGTAG
1 TACCGAAATACCCTTGTAGGGTAG
50971458 GACTACTTAT
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
27 50 1.00
ACGTcount: A:0.35, C:0.21, G:0.23, T:0.22
Consensus pattern (27 bp):
TACCGAAATACCCTTGTAGGGTAGAAA
Found at i:50971473 original size:54 final size:53
Alignment explanation
Indices: 50971375--50971487 Score: 127
Period size: 54 Copynumber: 2.1 Consensus size: 53
50971365 CTCGATTTAC
* * *
50971375 AAAATTACCGAAATACCCTTGTAGGGTAGAAATACCGAAATACCCTTGTAGGGT
1 AAAA-TACCGAAATACCCCTGTAGGGTAGAAATACCGAAATACCCCTGGAGGGT
* * ** **
50971429 AGAAATACCGAAATACCCCTGTAGGGTAGGACTACTTATTTACCCCTGGAGGGT
1 A-AAATACCGAAATACCCCTGTAGGGTAGAAATACCGAAATACCCCTGGAGGGT
50971483 AAAAT
1 AAAAT
50971488 GACTATTTTA
Statistics
Matches: 49, Mismatches: 9, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
53 4 0.08
54 42 0.86
55 3 0.06
ACGTcount: A:0.35, C:0.19, G:0.21, T:0.24
Consensus pattern (53 bp):
AAAATACCGAAATACCCCTGTAGGGTAGAAATACCGAAATACCCCTGGAGGGT
Found at i:50972159 original size:27 final size:26
Alignment explanation
Indices: 50972115--50972166 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
50972105 TTTGCTGCAA
*
50972115 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
50972142 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
50972167 GCAACCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:50979121 original size:26 final size:27
Alignment explanation
Indices: 50979090--50979171 Score: 123
Period size: 26 Copynumber: 3.1 Consensus size: 27
50979080 ACAAAATTAT
50979090 CGAAATACCCTTGTAGGGTAGAAATAC
1 CGAAATACCCTTGTAGGGTAGAAATAC
50979117 C-AAATACCCTTGTAGGGTAGAAATAC
1 CGAAATACCCTTGTAGGGTAGAAATAC
* * *
50979143 CGAAATGCCC-TGTAGGGTAGGACTAC
1 CGAAATACCCTTGTAGGGTAGAAATAC
50979169 CGA
1 CGA
50979172 TTTACCCCTA
Statistics
Matches: 51, Mismatches: 3, Indels: 3
0.89 0.05 0.05
Matches are distributed among these distances:
26 43 0.84
27 8 0.16
ACGTcount: A:0.34, C:0.21, G:0.24, T:0.21
Consensus pattern (27 bp):
CGAAATACCCTTGTAGGGTAGAAATAC
Found at i:50987684 original size:13 final size:13
Alignment explanation
Indices: 50987666--50987691 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
50987656 AAGTAATCGT
50987666 ACACGGGCGTGTC
1 ACACGGGCGTGTC
50987679 ACACGGGCGTGTC
1 ACACGGGCGTGTC
50987692 CTTGCCAACC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.31, G:0.38, T:0.15
Consensus pattern (13 bp):
ACACGGGCGTGTC
Found at i:50995588 original size:21 final size:21
Alignment explanation
Indices: 50995545--50995590 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 21
50995535 CTTTCAAAAG
* * * *
50995545 AAAATAATAAAATTGAAATTA
1 AAAAAAATAAAAATAAAAATA
50995566 AAAAAAATAAAAATAAAAATA
1 AAAAAAATAAAAATAAAAATA
50995587 AAAA
1 AAAA
50995591 GATAAGAGGA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.78, C:0.00, G:0.02, T:0.20
Consensus pattern (21 bp):
AAAAAAATAAAAATAAAAATA
Found at i:50999223 original size:16 final size:17
Alignment explanation
Indices: 50999202--50999240 Score: 62
Period size: 16 Copynumber: 2.4 Consensus size: 17
50999192 GATGTAATGC
50999202 CCCAAAAATCCCGAAA-
1 CCCAAAAATCCCGAAAG
*
50999218 CCCAAAAATCCTGAAAG
1 CCCAAAAATCCCGAAAG
50999235 CCCAAA
1 CCCAAA
50999241 CTTTCTTTGT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
16 15 0.71
17 6 0.29
ACGTcount: A:0.49, C:0.36, G:0.08, T:0.08
Consensus pattern (17 bp):
CCCAAAAATCCCGAAAG
Found at i:51005454 original size:27 final size:27
Alignment explanation
Indices: 51005421--51005592 Score: 227
Period size: 27 Copynumber: 6.4 Consensus size: 27
51005411 TGATAAGTTA
* *
51005421 TAGAATTACCGAAATACCCTTGTAAGG
1 TAGAATTACCGAAATACCCCTGTAGGG
51005448 TAGAATTACCGAAATACCCCTGTAGGG
1 TAGAATTACCGAAATACCCCTGTAGGG
**
51005475 TAGAATTACCGAAATACCCCTGTAGAA
1 TAGAATTACCGAAATACCCCTGTAGGG
*
51005502 TAGAATTACCGAAATACCCTTGTAGGG
1 TAGAATTACCGAAATACCCCTGTAGGG
* * *
51005529 TAGAAATACTGAAACACCCCTGTAGGG
1 TAGAATTACCGAAATACCCCTGTAGGG
* ** *
51005556 TAGAATTACCGAGATACCTTTGTGGGG
1 TAGAATTACCGAAATACCCCTGTAGGG
*
51005583 TAAAATTACC
1 TAGAATTACC
51005593 ATTTTGCCCC
Statistics
Matches: 126, Mismatches: 19, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 126 1.00
ACGTcount: A:0.35, C:0.20, G:0.20, T:0.24
Consensus pattern (27 bp):
TAGAATTACCGAAATACCCCTGTAGGG
Found at i:51005555 original size:81 final size:81
Alignment explanation
Indices: 51005420--51005573 Score: 263
Period size: 81 Copynumber: 1.9 Consensus size: 81
51005410 TTGATAAGTT
* *
51005420 ATAGAATTACCGAAATACCCTTGTAAGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACC
1 ATAGAATTACCGAAATACCCTTGTAAGGTAGAAATACCGAAACACCCCTGTAGGGTAGAATTACC
51005485 GAAATACCCCTGTAGA
66 GAAATACCCCTGTAGA
* *
51005501 ATAGAATTACCGAAATACCCTTGTAGGGTAGAAATACTGAAACACCCCTGTAGGGTAGAATTACC
1 ATAGAATTACCGAAATACCCTTGTAAGGTAGAAATACCGAAACACCCCTGTAGGGTAGAATTACC
*
51005566 GAGATACC
66 GAAATACC
51005574 TTTGTGGGGT
Statistics
Matches: 68, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
81 68 1.00
ACGTcount: A:0.37, C:0.21, G:0.19, T:0.23
Consensus pattern (81 bp):
ATAGAATTACCGAAATACCCTTGTAAGGTAGAAATACCGAAACACCCCTGTAGGGTAGAATTACC
GAAATACCCCTGTAGA
Found at i:51005637 original size:27 final size:26
Alignment explanation
Indices: 51005593--51005646 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 26
51005583 TAAAATTACC
51005593 ATTTTGCCCCTAGGGTGTTAAATGACT
1 ATTTTGCCCCTAGGGTG-TAAATGACT
* *
51005620 ATTTTGCCCCTTGTGTGTAAATGACT
1 ATTTTGCCCCTAGGGTGTAAATGACT
51005646 A
1 A
51005647 AATTGTGTGA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
26 10 0.40
27 15 0.60
ACGTcount: A:0.22, C:0.19, G:0.20, T:0.39
Consensus pattern (26 bp):
ATTTTGCCCCTAGGGTGTAAATGACT
Found at i:51006341 original size:71 final size:71
Alignment explanation
Indices: 51006225--51006370 Score: 220
Period size: 71 Copynumber: 2.1 Consensus size: 71
51006215 GAGGAAGCAT
* * * *
51006225 TCTGGTAGCCTCGCTGCAATCTGGTGGCCTCGCCACATATATATATCTGTTCTGGTGACTTCGTC
1 TCTGGCAGCCTCGCTGCAATCTGGTGGCCTCGCCACATATATATATCTGTTCTGGTGACCTAGCC
51006290 ACAATA
66 ACAATA
* * * *
51006296 TCTGGCAGCCTCGCTGCAATCTGGTGGCTTTGCCACATATATATATCTGTTTTGGTGTCCTAGCC
1 TCTGGCAGCCTCGCTGCAATCTGGTGGCCTCGCCACATATATATATCTGTTCTGGTGACCTAGCC
51006361 ACAATA
66 ACAATA
51006367 TCTG
1 TCTG
51006371 TATCTGGTGA
Statistics
Matches: 67, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
71 67 1.00
ACGTcount: A:0.19, C:0.26, G:0.21, T:0.34
Consensus pattern (71 bp):
TCTGGCAGCCTCGCTGCAATCTGGTGGCCTCGCCACATATATATATCTGTTCTGGTGACCTAGCC
ACAATA
Found at i:51006816 original size:20 final size:21
Alignment explanation
Indices: 51006791--51006829 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
51006781 TCGTAACTAA
51006791 AAGGTTT-TTTTAATTTAATT
1 AAGGTTTCTTTTAATTTAATT
*
51006811 AAGGTTTCTTTTATTTTAA
1 AAGGTTTCTTTTAATTTAA
51006830 GAAGGGTTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.28, C:0.03, G:0.10, T:0.59
Consensus pattern (21 bp):
AAGGTTTCTTTTAATTTAATT
Found at i:51006834 original size:20 final size:20
Alignment explanation
Indices: 51006791--51006839 Score: 55
Period size: 21 Copynumber: 2.4 Consensus size: 20
51006781 TCGTAACTAA
*
51006791 AAGGTTTTTTTAATTTAATT
1 AAGGTTTTTTTAATTTAATG
*
51006811 AAGGTTTCTTTTATTTTAA-G
1 AAGGTTT-TTTTAATTTAATG
51006831 AAGGGTTTT
1 AA-GGTTTT
51006840 CAATGAAAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
20 10 0.40
21 15 0.60
ACGTcount: A:0.27, C:0.02, G:0.16, T:0.55
Consensus pattern (20 bp):
AAGGTTTTTTTAATTTAATG
Found at i:51010481 original size:44 final size:43
Alignment explanation
Indices: 51010333--51010499 Score: 153
Period size: 43 Copynumber: 3.9 Consensus size: 43
51010323 TGGAAATCTC
* * * * * *
51010333 ATACAATGCCAACGTCCTAGACATGGTTTTACA-AGTAATGAA
1 ATACAATGCCAATGTCCCAGATATGGTCTTACACAGAAATCAA
* * *
51010375 ATATCGATGCCACTGTCCCAGATAGGGTCTTACA-AGAAATCAA
1 ATA-CAATGCCAATGTCCCAGATATGGTCTTACACAGAAATCAA
* * * *
51010418 ATACAATGTCGATGTCCCAGACATGGTCTTACACATAAATCATA
1 ATACAATGCCAATGTCCCAGATATGGTCTTACACAGAAATCA-A
*
51010462 AGTA-AATGCCAATGTCCCAGATGTGGTCTTACAC-GAAA
1 A-TACAATGCCAATGTCCCAGATATGGTCTTACACAGAAA
51010500 ACACATATCG
Statistics
Matches: 100, Mismatches: 21, Indels: 7
0.78 0.16 0.05
Matches are distributed among these distances:
42 27 0.27
43 43 0.43
44 28 0.28
45 2 0.02
ACGTcount: A:0.36, C:0.22, G:0.17, T:0.25
Consensus pattern (43 bp):
ATACAATGCCAATGTCCCAGATATGGTCTTACACAGAAATCAA
Found at i:51015333 original size:10 final size:12
Alignment explanation
Indices: 51015313--51015346 Score: 59
Period size: 12 Copynumber: 2.8 Consensus size: 12
51015303 TTGGTTGTAA
51015313 GCTTATATATAT
1 GCTTATATATAT
51015325 GCTTATATATAT
1 GCTTATATATAT
*
51015337 ACTTATATAT
1 GCTTATATAT
51015347 GCATGCATGT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.35, C:0.09, G:0.06, T:0.50
Consensus pattern (12 bp):
GCTTATATATAT
Found at i:51022027 original size:39 final size:39
Alignment explanation
Indices: 51021912--51022096 Score: 185
Period size: 40 Copynumber: 4.6 Consensus size: 39
51021902 GCTACTCGTT
* *
51021912 CAAATGCCTTCGGAACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGG-GCTTAGCCCGGATT-TAGTAACTCGCA
* *
51021952 CAAATGCCTTCGGGACTTAACCCGGATTTAGCAACTCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGATTTAGTAACTCGCA
* *
51021992 CCAATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGATTTAGTAACTCGCA
* ** * * * *
51022031 CAAATGCCTTCGGATCTTAGTTCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGG-GCTTAGCCCGGATTTAGTAAC-TCGCA
51022072 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGG-CTTAGCCCGGA
51022097 CATCATTCAA
Statistics
Matches: 120, Mismatches: 20, Indels: 10
0.80 0.13 0.07
Matches are distributed among these distances:
39 34 0.28
40 76 0.63
41 10 0.08
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (39 bp):
CAAATGCCTTCGGGCTTAGCCCGGATTTAGTAACTCGCA
Found at i:51022057 original size:79 final size:80
Alignment explanation
Indices: 51021914--51022096 Score: 196
Period size: 79 Copynumber: 2.3 Consensus size: 80
51021904 TACTCGTTCA
* * *
51021914 AATGCCTTCGGAACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGA
1 AATGCCTTCGG-GCTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGA
* *
51021978 TTTAG-CAAC-TCGCACC
65 TATAGTC-ACTTAGCA-C
***
51021994 AATGCCTTCGGGCTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAGTTCGGA
1 AATGCCTTCGGGCTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGGA
*
51022057 TATGGTCACTTAGCAC
65 TATAGTCACTTAGCAC
*
51022073 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGG-CTTAGCCCGGA
51022097 CATCATTCAA
Statistics
Matches: 88, Mismatches: 10, Indels: 10
0.81 0.09 0.09
Matches are distributed among these distances:
78 3 0.03
79 57 0.65
80 28 0.32
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (80 bp):
AATGCCTTCGGGCTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
ATAGTCACTTAGCAC
Found at i:51031373 original size:40 final size:40
Alignment explanation
Indices: 51031191--51031413 Score: 236
Period size: 40 Copynumber: 5.6 Consensus size: 40
51031181 TCCTCGTTCA
* * * * *
51031191 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
51031230 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
51031270 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
51031310 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* ** * * * *
51031350 AAGGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
51031390 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
51031414 CAGCATTCAA
Statistics
Matches: 160, Mismatches: 20, Indels: 7
0.86 0.11 0.04
Matches are distributed among these distances:
39 37 0.23
40 115 0.72
41 8 0.05
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:51031422 original size:41 final size:41
Alignment explanation
Indices: 51031345--51031422 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
51031335 TTAGTATCTC
* * *
51031345 GCACAAAGGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
51031386 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAAGGCCTTC-GGATCTTAGCCCGGACA-CATTCA
51031423 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (41 bp):
GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:51039230 original size:40 final size:40
Alignment explanation
Indices: 51039088--51039254 Score: 223
Period size: 39 Copynumber: 4.2 Consensus size: 40
51039078 TCCTCGTTCA
* * *
51039088 AATGCCTTCGGGACATAGCCCGG-TTTAGTAACTCACAC-
1 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCACG
*
51039126 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCACG
*
51039166 AATGCCTTC-GGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCACG
* * * *
51039205 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCACG
*
51039245 AAGGCCTTCG
1 AATGCCTTCG
51039255 ATCTTAGTCC
Statistics
Matches: 116, Mismatches: 10, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
38 22 0.19
39 49 0.42
40 45 0.39
ACGTcount: A:0.27, C:0.29, G:0.20, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCACG
Found at i:51039241 original size:79 final size:77
Alignment explanation
Indices: 51039086--51039254 Score: 221
Period size: 79 Copynumber: 2.2 Consensus size: 77
51039076 GCTCCTCGTT
* *
51039086 CAAATGCCTTCGGGACATAGCCCGGTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGGAT
1 CAAATGCCTTC-GGACATAACCCGGTTTAATAACTCACACAATGCCTTCGGGACATAACCCGGAT
51039151 TTAACAACTCGCA
65 TTAACAACTCGCA
* * * *
51039164 CGAATGCCTTCGGACTTAACCCGGATTTAATAACTCGCACGAATGCCTTCGGGACTTAACCCGGA
1 CAAATGCCTTCGGACATAACCCGG-TTTAATAACTCACAC-AATGCCTTCGGGACATAACCCGGA
** *
51039229 TTTAGTATCTCGCA
64 TTTAACAACTCGCA
*
51039243 CAAAGGCCTTCG
1 CAAATGCCTTCG
51039255 ATCTTAGTCC
Statistics
Matches: 78, Mismatches: 11, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
77 11 0.14
78 23 0.29
79 44 0.56
ACGTcount: A:0.27, C:0.29, G:0.20, T:0.24
Consensus pattern (77 bp):
CAAATGCCTTCGGACATAACCCGGTTTAATAACTCACACAATGCCTTCGGGACATAACCCGGATT
TAACAACTCGCA
Found at i:51057872 original size:39 final size:40
Alignment explanation
Indices: 51057714--51057935 Score: 257
Period size: 40 Copynumber: 5.7 Consensus size: 40
51057704 GCTCCTCGTT
* *
51057714 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCA
* * *
51057754 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
51057794 CAAATGCCTTCGGG-CTTAGCCCGG-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
51057832 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* *
51057871 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGT-ATC-TCGCA
51057912 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
51057936 CATCATTCAA
Statistics
Matches: 164, Mismatches: 9, Indels: 19
0.85 0.05 0.10
Matches are distributed among these distances:
38 38 0.23
39 51 0.31
40 64 0.39
41 11 0.07
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:51057896 original size:117 final size:118
Alignment explanation
Indices: 51057714--51057935 Score: 287
Period size: 117 Copynumber: 1.9 Consensus size: 118
51057704 GCTCCTCGTT
*
51057714 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACATAGCCCGGATATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCGG
*
51057779 AT-TTAGTAAC-TCGCACAAATGCCTTCGGG-CTTAGCCCGGATTAGTATCTCGCA
66 ATATT-GTAACTTAGCAC-AA-GCCTTCGGGACTTAGCCCGGATTAGTATCTCGCA
* **
51057832 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGT-ATCTCGCACAAATGCCTTC-GGATCTTAGTC
1 CAAATGCCTTCGGGACATAGCCCGGATA-TAGTAAT-TCGCACAAATGCCTTCGGGA-CTTAACC
*
51057893 CGGATATTGTCACTTAGCACAAGCCTTCGGGACTTAGCCCGGA
63 CGGATATTGTAACTTAGCACAAGCCTTCGGGACTTAGCCCGGA
51057936 CATCATTCAA
Statistics
Matches: 92, Mismatches: 6, Indels: 13
0.83 0.05 0.12
Matches are distributed among these distances:
116 15 0.16
117 56 0.61
118 21 0.23
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (118 bp):
CAAATGCCTTCGGGACATAGCCCGGATATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCGG
ATATTGTAACTTAGCACAAGCCTTCGGGACTTAGCCCGGATTAGTATCTCGCA
Found at i:51065786 original size:39 final size:40
Alignment explanation
Indices: 51065668--51065891 Score: 269
Period size: 40 Copynumber: 5.7 Consensus size: 40
51065658 GCTCCTCGTT
* * *
51065668 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAATTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
51065708 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
51065748 CAAATGCCTTCGGGACTTAACCC-GATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * *
51065787 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** * * * *
51065826 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
51065867 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
51065892 CATCACTCAA
Statistics
Matches: 164, Mismatches: 14, Indels: 12
0.86 0.07 0.06
Matches are distributed among these distances:
38 9 0.05
39 55 0.34
40 87 0.53
41 13 0.08
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:51065851 original size:118 final size:119
Alignment explanation
Indices: 51065668--51065889 Score: 292
Period size: 118 Copynumber: 1.9 Consensus size: 119
51065658 GCTCCTCGTT
*
51065668 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACATAGCCCGGATATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCGG
* *
51065733 ATTTAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCCGATTTAGTAACTCGCA
66 ATATAGTAACTTAGCACAAA-GCCTTCGGGACTTAACCCGATTTAGTAACTCGCA
* **
51065787 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGT-ATCTCGCACAAATGCCTTC-GGATCTTAGTC
1 CAAATGCCTTCGGGACATAGCCCGGATA-TAGTAAT-TCGCACAAATGCCTTCGGGA-CTTAACC
* * *
51065848 CGGATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCG
63 CGGATATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCG
51065890 GACATCACTC
Statistics
Matches: 90, Mismatches: 9, Indels: 9
0.83 0.08 0.08
Matches are distributed among these distances:
117 6 0.07
118 62 0.69
119 22 0.24
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (119 bp):
CAAATGCCTTCGGGACATAGCCCGGATATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCGG
ATATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGATTTAGTAACTCGCA
Found at i:51066989 original size:13 final size:13
Alignment explanation
Indices: 51066971--51066995 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
51066961 AGGATGAGCA
51066971 TTTTTTTTCTTTG
1 TTTTTTTTCTTTG
51066984 TTTTTTTTCTTT
1 TTTTTTTTCTTT
51066996 CTAGTTTCGG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.08, G:0.04, T:0.88
Consensus pattern (13 bp):
TTTTTTTTCTTTG
Found at i:51075193 original size:40 final size:40
Alignment explanation
Indices: 51075149--51075367 Score: 261
Period size: 40 Copynumber: 5.5 Consensus size: 40
51075139 GCTCCTCGTT
* *
51075149 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
51075189 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
*
51075229 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * *
51075268 CAAATGCCTTC-GGTCTTAGTCCGGATAT-GTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* * * *
51075306 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
51075347 CAAA-GCCTTCGGGACTTAGCC
1 CAAATGCCTTCGGGACTTAGCC
51075368 AGACATCATT
Statistics
Matches: 159, Mismatches: 13, Indels: 14
0.85 0.07 0.08
Matches are distributed among these distances:
38 25 0.16
39 57 0.36
40 66 0.42
41 11 0.07
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:51075251 original size:79 final size:77
Alignment explanation
Indices: 51075149--51075364 Score: 238
Period size: 79 Copynumber: 2.7 Consensus size: 77
51075139 GCTCCTCGTT
*
51075149 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGG-CTTAGCCCGG-TATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
*
51075214 ATTTAGTAACTCGCA
64 ATAT-GTAACTCGCA
* * * **
51075229 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTC-GGTCTTAGTCCGGA
1 CAAATGCCTTCGGGCTTAGCCCGGTA-TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGA
*
51075293 TATGTATCTCGCA
65 TATGTAACTCGCA
* * * * *
51075306 CAAATGCCTTCGGATCTTAGTCCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTA
1 CAAATGCCTTCGG-GCTTAGCCCGG-TATAGTAAC-TCGCACAAATGCCTTCGGGACTTA
51075365 GCCAGACATC
Statistics
Matches: 115, Mismatches: 16, Indels: 11
0.81 0.11 0.08
Matches are distributed among these distances:
77 22 0.19
78 33 0.29
79 46 0.40
80 14 0.12
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (77 bp):
CAAATGCCTTCGGGCTTAGCCCGGTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
ATGTAACTCGCA
Found at i:51082940 original size:40 final size:40
Alignment explanation
Indices: 51082896--51083115 Score: 263
Period size: 40 Copynumber: 5.5 Consensus size: 40
51082886 GCTCCTCGTT
* *
51082896 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
51082936 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
*
51082976 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* *
51083015 CAAATGCCTTC-GGATCTTAGTCCGGATAT-GTATCTCGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAACTCGCA
* * * *
51083054 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
51083095 CAAA-GCCTTCGGGACTTAGCC
1 CAAATGCCTTCGGGACTTAGCC
51083116 TAGACATCAT
Statistics
Matches: 161, Mismatches: 12, Indels: 14
0.86 0.06 0.07
Matches are distributed among these distances:
38 2 0.01
39 71 0.44
40 76 0.47
41 12 0.07
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:51082998 original size:79 final size:77
Alignment explanation
Indices: 51082896--51083112 Score: 240
Period size: 79 Copynumber: 2.7 Consensus size: 77
51082886 GCTCCTCGTT
*
51082896 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGG-CTTAGCCCGG-TATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
*
51082961 ATTTAGTAACTCGCA
64 ATAT-GTAACTCGCA
* * **
51082976 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 CAAATGCCTTCGGGCTTAGCCCGGTA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
*
51083040 ATATGTATCTCGCA
64 ATATGTAACTCGCA
* * * * *
51083054 CAAATGCCTTCGGATCTTAGTCCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTA
1 CAAATGCCTTCGG-GCTTAGCCCGG-TATAGTAAC-TCGCACAAATGCCTTCGGGACTTA
51083113 GCCTAGACAT
Statistics
Matches: 117, Mismatches: 14, Indels: 13
0.81 0.10 0.09
Matches are distributed among these distances:
78 26 0.22
79 65 0.56
80 26 0.22
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (77 bp):
CAAATGCCTTCGGGCTTAGCCCGGTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
ATGTAACTCGCA
Found at i:51090702 original size:40 final size:40
Alignment explanation
Indices: 51090658--51090877 Score: 263
Period size: 40 Copynumber: 5.5 Consensus size: 40
51090648 GCTCCTCGTT
* *
51090658 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
51090698 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
*
51090738 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* *
51090777 CAAATGCCTTC-GGATCTTAGTCCGGATAT-GTATCTCGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAACTCGCA
* * * *
51090816 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
51090857 CAAA-GCCTTCGGGACTTAGCC
1 CAAATGCCTTCGGGACTTAGCC
51090878 TAGACATCAT
Statistics
Matches: 161, Mismatches: 12, Indels: 14
0.86 0.06 0.07
Matches are distributed among these distances:
38 2 0.01
39 71 0.44
40 76 0.47
41 12 0.07
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:51090760 original size:79 final size:77
Alignment explanation
Indices: 51090658--51090874 Score: 240
Period size: 79 Copynumber: 2.7 Consensus size: 77
51090648 GCTCCTCGTT
*
51090658 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGG-CTTAGCCCGG-TATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
*
51090723 ATTTAGTAACTCGCA
64 ATAT-GTAACTCGCA
* * **
51090738 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 CAAATGCCTTCGGGCTTAGCCCGGTA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
*
51090802 ATATGTATCTCGCA
64 ATATGTAACTCGCA
* * * * *
51090816 CAAATGCCTTCGGATCTTAGTCCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTA
1 CAAATGCCTTCGG-GCTTAGCCCGG-TATAGTAAC-TCGCACAAATGCCTTCGGGACTTA
51090875 GCCTAGACAT
Statistics
Matches: 117, Mismatches: 14, Indels: 13
0.81 0.10 0.09
Matches are distributed among these distances:
78 26 0.22
79 65 0.56
80 26 0.22
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (77 bp):
CAAATGCCTTCGGGCTTAGCCCGGTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
ATGTAACTCGCA
Found at i:51093945 original size:28 final size:27
Alignment explanation
Indices: 51093914--51093976 Score: 83
Period size: 26 Copynumber: 2.3 Consensus size: 27
51093904 AGTTACTAGA
*
51093914 ATACCCCTAAGTATGGAAAATTACCATT
1 ATACCCCTAAG-ATGGAAAATGACCATT
* *
51093942 ATACCCCT-AGGTGTAAAATGACCATT
1 ATACCCCTAAGATGGAAAATGACCATT
51093968 ATACCCCTA
1 ATACCCCTA
51093977 GGGTTAATTT
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
26 21 0.68
27 2 0.06
28 8 0.26
ACGTcount: A:0.37, C:0.25, G:0.11, T:0.27
Consensus pattern (27 bp):
ATACCCCTAAGATGGAAAATGACCATT
Found at i:51094124 original size:27 final size:27
Alignment explanation
Indices: 51094084--51094195 Score: 145
Period size: 27 Copynumber: 4.1 Consensus size: 27
51094074 AGGAAGCGTC
*
51094084 CTGGTGGCTATGCCACAATTATCTGTT
1 CTGGTGGCTATGCCACAAATATCTGTT
*
51094111 CTGGTGGCTCTGCCACAAATATCTGTT
1 CTGGTGGCTATGCCACAAATATCTGTT
* *
51094138 TTGGTGGCTCTGCCACAAATATCTGTAT
1 CTGGTGGCTATGCCACAAATATCTGT-T
* * *
51094166 CTGGTGACTATGTCAC-ATTATCTGTT
1 CTGGTGGCTATGCCACAAATATCTGTT
51094192 CTGG
1 CTGG
51094196 CAACCATGCT
Statistics
Matches: 76, Mismatches: 8, Indels: 3
0.87 0.09 0.03
Matches are distributed among these distances:
26 5 0.07
27 58 0.76
28 13 0.17
ACGTcount: A:0.19, C:0.22, G:0.22, T:0.37
Consensus pattern (27 bp):
CTGGTGGCTATGCCACAAATATCTGTT
Found at i:51104069 original size:56 final size:55
Alignment explanation
Indices: 51103991--51104163 Score: 274
Period size: 56 Copynumber: 3.1 Consensus size: 55
51103981 GGTCAGCTTG
* * *
51103991 CAAGATTAATGTCCGGGTTGGTAGGGAATGTTGTTGGACCAAGGGTAGGCTTGAAA
1 CAAGATTAATGTTCGGG-TGGTAGGGAATGTTGTAGGACTAAGGGTAGGCTTGAAA
51104047 CAAGATTAATGTTCGTGGTGGTAGGGAATGTTGTAGGACTAAGGGTAGGCTTGAAA
1 CAAGATTAATGTTCG-GGTGGTAGGGAATGTTGTAGGACTAAGGGTAGGCTTGAAA
* *
51104103 CAAGATTAATGTTCAGGTTGGCAGGGAATGTTGTAGGACTAAGGGTAGGCTTGAAA
1 CAAGATTAATGTTC-GGGTGGTAGGGAATGTTGTAGGACTAAGGGTAGGCTTGAAA
51104159 CAAGA
1 CAAGA
51104164 AATGAAAAGA
Statistics
Matches: 110, Mismatches: 5, Indels: 4
0.92 0.04 0.03
Matches are distributed among these distances:
56 107 0.97
57 3 0.03
ACGTcount: A:0.29, C:0.09, G:0.35, T:0.27
Consensus pattern (55 bp):
CAAGATTAATGTTCGGGTGGTAGGGAATGTTGTAGGACTAAGGGTAGGCTTGAAA
Found at i:51105645 original size:37 final size:37
Alignment explanation
Indices: 51105595--51105670 Score: 152
Period size: 37 Copynumber: 2.1 Consensus size: 37
51105585 CATGATCCAC
51105595 TGGCCTGAATTTAACTTACCTGATGTATTACCAATCA
1 TGGCCTGAATTTAACTTACCTGATGTATTACCAATCA
51105632 TGGCCTGAATTTAACTTACCTGATGTATTACCAATCA
1 TGGCCTGAATTTAACTTACCTGATGTATTACCAATCA
51105669 TG
1 TG
51105671 CATAACAAAC
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 39 1.00
ACGTcount: A:0.29, C:0.21, G:0.14, T:0.36
Consensus pattern (37 bp):
TGGCCTGAATTTAACTTACCTGATGTATTACCAATCA
Found at i:51106827 original size:49 final size:49
Alignment explanation
Indices: 51106769--51106947 Score: 225
Period size: 49 Copynumber: 3.6 Consensus size: 49
51106759 ATCTAGTATG
51106769 CATAGTAGCCTGCACTTAGTACTACACATGCAACCAATTATCCGGTACA
1 CATAGTAGCCTGCACTTAGTACTACACATGCAACCAATTATCCGGTACA
* * * * *
51106818 CGTAGTAGCCTGCACTTAGTACTACACACGTG-ATCAAAGTTATCGGGTACG
1 CATAGTAGCCTGCACTTAGTACTACACA--TGCAACCAA-TTATCCGGTACA
* * * * *
51106869 CATAGCAGCATGCACTTAGTACTATACATGCGACCAATTATCCAGTACA
1 CATAGTAGCCTGCACTTAGTACTACACATGCAACCAATTATCCGGTACA
*
51106918 TATAGTAGCCTGCACTTAGTACTACACATG
1 CATAGTAGCCTGCACTTAGTACTACACATG
51106948 TGACCTCACA
Statistics
Matches: 107, Mismatches: 19, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
49 64 0.60
50 7 0.07
51 36 0.34
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.26
Consensus pattern (49 bp):
CATAGTAGCCTGCACTTAGTACTACACATGCAACCAATTATCCGGTACA
Found at i:51106905 original size:100 final size:100
Alignment explanation
Indices: 51106768--51106950 Score: 294
Period size: 100 Copynumber: 1.8 Consensus size: 100
51106758 TATCTAGTAT
* * * *
51106768 GCATAGTAGCCTGCACTTAGTACTACACATGCAACCAATTATCCGGTACACGTAGTAGCCTGCAC
1 GCATAGCAGCATGCACTTAGTACTACACATGCAACCAATTATCCAGTACACATAGTAGCCTGCAC
51106833 TTAGTACTACACACGTGATCAAAGTTATCGGGTAC
66 TTAGTACTACACACGTGATCAAAGTTATCGGGTAC
* * *
51106868 GCATAGCAGCATGCACTTAGTACTATACATGCGACCAATTATCCAGTACATATAGTAGCCTGCAC
1 GCATAGCAGCATGCACTTAGTACTACACATGCAACCAATTATCCAGTACACATAGTAGCCTGCAC
*
51106933 TTAGTACTACACATGTGA
66 TTAGTACTACACACGTGA
51106951 CCTCACAATA
Statistics
Matches: 75, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
100 75 1.00
ACGTcount: A:0.31, C:0.25, G:0.18, T:0.26
Consensus pattern (100 bp):
GCATAGCAGCATGCACTTAGTACTACACATGCAACCAATTATCCAGTACACATAGTAGCCTGCAC
TTAGTACTACACACGTGATCAAAGTTATCGGGTAC
Found at i:51107229 original size:27 final size:27
Alignment explanation
Indices: 51107199--51107252 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
51107189 TCATACAACC
* *
51107199 CATGTAATAGTAATTTAACATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
**
51107226 CATGTAACAATAATTTTCCATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
51107253 TCACATGACA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.39, C:0.15, G:0.06, T:0.41
Consensus pattern (27 bp):
CATGTAACAATAATTTAACATTCAATT
Found at i:51118743 original size:50 final size:50
Alignment explanation
Indices: 51118626--51118908 Score: 259
Period size: 50 Copynumber: 5.6 Consensus size: 50
51118616 TATGAGAACG
* * * *
51118626 CATGTGTAGTACTATGTGCAGGCTACTATGTGTTTAAGACAG-TT-TTAGGTTA
1 CATGTGTAGTACTAAGTTCAGGCTACTATGTG--T-A-CCAGATTGTTAGGTCA
* *
51118678 -AGTGTGTAGTACTAAGTTCAGGCTACTACGTGTACCAGATTGTTAGGTCG
1 CA-TGTGTAGTACTAAGTTCAGGCTACTATGTGTACCAGATTGTTAGGTCA
* * * * * *
51118728 CATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTGATAGCTTCGATCA
1 CATGTGTAGTACTAAGTTCAGGCTACTATGTGTACCAGATTG-TTAGGTCA
* * * * * **
51118779 CGTGTGTAGTACTAAGTTTAGGCTATTATGTGTATCAAAAGGTTAGGTCA
1 CATGTGTAGTACTAAGTTCAGGCTACTATGTGTACCAGATTGTTAGGTCA
* * * * *
51118829 CGTGTGTAGTACTAAGTGCAGGCTACTATGTGAACCAGATTGTTTGGTCG
1 CATGTGTAGTACTAAGTTCAGGCTACTATGTGTACCAGATTGTTAGGTCA
51118879 CATGTGTAGTACTAAGTGT-AGGCTACTATG
1 CATGTGTAGTACTAAGT-TCAGGCTACTATG
51118909 CTTACTAGAG
Statistics
Matches: 187, Mismatches: 38, Indels: 14
0.78 0.16 0.06
Matches are distributed among these distances:
48 3 0.02
49 3 0.02
50 115 0.61
51 39 0.21
52 27 0.14
ACGTcount: A:0.25, C:0.15, G:0.27, T:0.34
Consensus pattern (50 bp):
CATGTGTAGTACTAAGTTCAGGCTACTATGTGTACCAGATTGTTAGGTCA
Found at i:51118824 original size:101 final size:100
Alignment explanation
Indices: 51118679--51118908 Score: 289
Period size: 101 Copynumber: 2.3 Consensus size: 100
51118669 TTTAGGTTAA
* * * ** *
51118679 GTGTGTAGTACTAAGTTCAGGCTACTACGTGTACCAGATTGTTAGGTCGCATGTGTAGTACTAAG
1 GTGTGTAGTACTAAGTTTAGGCTACTATGTGTACCAAAAGGTTAGGTCACATGTGTAGTACTAAG
* *
51118744 TGCAGGCTACTATGCGTACCTGATAGCTTCGATCAC
66 TGCAGGCTACTATGCGAACCAGATAG-TTCGATCAC
* * *
51118780 GTGTGTAGTACTAAGTTTAGGCTATTATGTGTATCAAAAGGTTAGGTCACGTGTGTAGTACTAAG
1 GTGTGTAGTACTAAGTTTAGGCTACTATGTGTACCAAAAGGTTAGGTCACATGTGTAGTACTAAG
* * * * *
51118845 TGCAGGCTACTATGTGAACCAGATTGTTTGGTCGC
66 TGCAGGCTACTATGCGAACCAGATAGTTCGATCAC
* *
51118880 ATGTGTAGTACTAAGTGTAGGCTACTATG
1 GTGTGTAGTACTAAGTTTAGGCTACTATG
51118909 CTTACTAGAG
Statistics
Matches: 110, Mismatches: 19, Indels: 1
0.85 0.15 0.01
Matches are distributed among these distances:
100 32 0.29
101 78 0.71
ACGTcount: A:0.25, C:0.16, G:0.27, T:0.33
Consensus pattern (100 bp):
GTGTGTAGTACTAAGTTTAGGCTACTATGTGTACCAAAAGGTTAGGTCACATGTGTAGTACTAAG
TGCAGGCTACTATGCGAACCAGATAGTTCGATCAC
Found at i:51119056 original size:18 final size:18
Alignment explanation
Indices: 51119033--51119069 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
51119023 ACTATGTAAT
51119033 GAATAAGTGAAGGTTCGG
1 GAATAAGTGAAGGTTCGG
51119051 GAATAAGTGAAGGTTCGG
1 GAATAAGTGAAGGTTCGG
51119069 G
1 G
51119070 TGTGTAAACT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.32, C:0.05, G:0.41, T:0.22
Consensus pattern (18 bp):
GAATAAGTGAAGGTTCGG
Found at i:51129932 original size:47 final size:47
Alignment explanation
Indices: 51129881--51130152 Score: 420
Period size: 47 Copynumber: 5.7 Consensus size: 47
51129871 TTAGGATTCT
* *
51129881 ATGTGATGGATGTGAACA-TGCATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCG
51129928 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
51129975 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
51130024 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * * * *
51130071 ATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * *
51130118 ACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
51130153 TCCCGAAGGG
Statistics
Matches: 210, Mismatches: 12, Indels: 6
0.92 0.05 0.03
Matches are distributed among these distances:
46 1 0.00
47 162 0.77
49 47 0.22
ACGTcount: A:0.32, C:0.09, G:0.31, T:0.29
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:51130011 original size:96 final size:94
Alignment explanation
Indices: 51129881--51130152 Score: 420
Period size: 96 Copynumber: 2.9 Consensus size: 94
51129871 TTAGGATTCT
* *
51129881 ATGTGATGGATGTGAACA-TGCATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
51129945 GTGTATATATGTGATAAGGCCTAATGGCCG
65 GTGTATATATGTGATAAGGCCTAATGGCCG
51129975 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
51130040 AGTGTATATATGTGATAAGGCCTAATGGCCG
64 AGTGTATATATGTGATAAGGCCTAATGGCCG
* * * * * * *
51130071 ATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
*
51130136 TGTATAAATGTGATAAG
66 TGTATATATGTGATAAG
51130153 TCCCGAAGGG
Statistics
Matches: 165, Mismatches: 10, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
93 1 0.01
94 71 0.43
96 93 0.56
ACGTcount: A:0.32, C:0.09, G:0.31, T:0.29
Consensus pattern (94 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
TGTATATATGTGATAAGGCCTAATGGCCG
Found at i:51130054 original size:143 final size:141
Alignment explanation
Indices: 51129881--51130152 Score: 429
Period size: 143 Copynumber: 1.9 Consensus size: 141
51129871 TTAGGATTCT
*
51129881 ATGTGATGGATGTGAACATGCATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
* * * *
51129946 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAA
66 TGTATATATGTGACAAGGCCGAATGGCCAACGTGATGAATGTGAAAGTGTATA-A-ATGTGATAA
51130011 GGCCTAATGGCCG
129 GGCCTAATGGCCG
*
51130024 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 ATGTGATGAATGTGAACA-TGCATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
* * *
51130088 GTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
65 GTGTATATATGTGACAAGGCCGAATGGCCAACGTGATGAATGTGAAAGTGTATAAATGTGATAAG
51130153 TCCCGAAGGG
Statistics
Matches: 119, Mismatches: 9, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
141 10 0.08
142 2 0.02
143 107 0.90
ACGTcount: A:0.32, C:0.09, G:0.31, T:0.29
Consensus pattern (141 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
TGTATATATGTGACAAGGCCGAATGGCCAACGTGATGAATGTGAAAGTGTATAAATGTGATAAGG
CCTAATGGCCG
Found at i:51130327 original size:37 final size:37
Alignment explanation
Indices: 51130271--51130349 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
51130261 CCGAGCTCTA
* *
51130271 AAGACCCGATGACTACGTGTGG-GAATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
51130308 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
51130345 AAGAC
1 AAGAC
51130350 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 37 0.97
38 1 0.03
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:51132791 original size:32 final size:32
Alignment explanation
Indices: 51132755--51132815 Score: 88
Period size: 32 Copynumber: 1.9 Consensus size: 32
51132745 TTCACAGCCC
*
51132755 ATAACAGAATCAATTGGGCATAA-CCCAATCCA
1 ATAACAGAA-CAAGTGGGCATAAGCCCAATCCA
*
51132787 ATAACAGAACAAGTGGGCCTAAGCCCAAT
1 ATAACAGAACAAGTGGGCATAAGCCCAAT
51132816 ATAGTGAAAG
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
31 11 0.42
32 15 0.58
ACGTcount: A:0.43, C:0.25, G:0.16, T:0.16
Consensus pattern (32 bp):
ATAACAGAACAAGTGGGCATAAGCCCAATCCA
Found at i:51144377 original size:59 final size:59
Alignment explanation
Indices: 51144312--51144499 Score: 150
Period size: 59 Copynumber: 3.2 Consensus size: 59
51144302 ATTTTATTAA
51144312 ATCATATATTTTAATTAAAATATATTTAATATTAATTATTTCAAATTATATTTTATAGT
1 ATCATATATTTTAATTAAAATATATTTAATATTAATTATTTCAAATTATATTTTATAGT
* * ** * * * ** * * * *
51144371 ATCATATATTATGATTTTAGTA-AATTCATA-TAAGAATATTGATTATTAGAATTTTATTA-A
1 ATCATATATTTTAATTAAAATATATTTAATATTAATTAT-TTCA-AATTA-TATTTTA-TAGT
* * * *
51144431 ATTATATATTTTAATTAAAATATATTTAATAATT-ATTATTTTAATTTATATTTTACAGT
1 ATCATATATTTTAATTAAAATATATTTAAT-ATTAATTATTTCAAATTATATTTTATAGT
51144490 ATCATATATT
1 ATCATATATT
51144500 ATGATTTGAG
Statistics
Matches: 91, Mismatches: 30, Indels: 16
0.66 0.22 0.12
Matches are distributed among these distances:
57 5 0.05
58 10 0.11
59 36 0.40
60 25 0.27
61 10 0.11
62 4 0.04
63 1 0.01
ACGTcount: A:0.41, C:0.03, G:0.04, T:0.52
Consensus pattern (59 bp):
ATCATATATTTTAATTAAAATATATTTAATATTAATTATTTCAAATTATATTTTATAGT
Found at i:51144426 original size:119 final size:120
Alignment explanation
Indices: 51144301--51144589 Score: 492
Period size: 119 Copynumber: 2.4 Consensus size: 120
51144291 AATTATTTTA
*
51144301 AATTTTATTAAATCATATATTTTAATTAAAATATATTTAATATTAATTATTTCAAATTATATTTT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATATTAATTATTTCAAATTATATTTT
* * *
51144366 ATAGTATCATATATTATGATTTTAGTAAATTCATATAAGAATATTGATTATT-AG
66 ACAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
* *
51144420 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATT-ATTATTTTAATTTATATTT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAAT-ATTAATTATTTCAAATTATATTT
51144484 TACAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
65 TACAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
*
51144540 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTAT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATATTAATTAT
51144590 GTTTAAATAT
Statistics
Matches: 160, Mismatches: 7, Indels: 5
0.93 0.04 0.03
Matches are distributed among these distances:
119 109 0.68
120 51 0.32
ACGTcount: A:0.43, C:0.02, G:0.04, T:0.50
Consensus pattern (120 bp):
AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATATTAATTATTTCAAATTATATTTT
ACAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
Found at i:51144447 original size:18 final size:18
Alignment explanation
Indices: 51144421--51144476 Score: 63
Period size: 15 Copynumber: 3.5 Consensus size: 18
51144411 GATTATTAGA
51144421 ATTTT-ATTAAATTATAT
1 ATTTTAATTAAATTATAT
51144438 ATTTTAATTAAA--ATAT
1 ATTTTAATTAAATTATAT
51144454 A-TTTAA-T-AATTAT-T
1 ATTTTAATTAAATTATAT
51144468 ATTTTAATT
1 ATTTTAATT
51144477 TATATTTTAC
Statistics
Matches: 34, Mismatches: 0, Indels: 11
0.76 0.00 0.24
Matches are distributed among these distances:
13 2 0.06
14 3 0.09
15 12 0.35
16 6 0.18
17 5 0.15
18 6 0.18
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (18 bp):
ATTTTAATTAAATTATAT
Found at i:51144557 original size:59 final size:58
Alignment explanation
Indices: 51144375--51144557 Score: 146
Period size: 56 Copynumber: 3.1 Consensus size: 58
51144365 TATAGTATCA
*
51144375 TATATTATGATTTTAGTAAATTCATATAAGAATATTGATTATT-AGAATTTTATTAAAT
1 TATATTATGATTTAAGTAAATTCATATAAGAATATT-ATTATTAAGAATTTTATTAAAT
* * * * * *
51144433 TATA-TAT--TTTAATTAAAATAT-ATTTAATAATTATTATT-TTAATTTATATTTTA-CAGTAT
1 TATATTATGATTTAAGT-AAAT-TCATATAAGAA-TATTATTATTAA--GA-ATTTTATTA-AAT
*
51144492 CATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAAT
1 --TATATTATGATTTAAGTAAATTCATATAAGAATATT-ATTATTAAGAATTTTATTAAAT
51144553 TATAT
1 TATAT
51144558 ATTTTAATTA
Statistics
Matches: 94, Mismatches: 14, Indels: 33
0.67 0.10 0.23
Matches are distributed among these distances:
55 7 0.07
56 15 0.16
57 8 0.09
58 6 0.06
59 13 0.14
61 12 0.13
62 10 0.11
63 14 0.15
64 9 0.10
ACGTcount: A:0.42, C:0.02, G:0.06, T:0.50
Consensus pattern (58 bp):
TATATTATGATTTAAGTAAATTCATATAAGAATATTATTATTAAGAATTTTATTAAAT
Found at i:51144569 original size:18 final size:17
Alignment explanation
Indices: 51144541--51144575 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
51144531 ATTATTAAGA
*
51144541 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
51144558 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
51144576 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:51144683 original size:147 final size:148
Alignment explanation
Indices: 51144529--51144802 Score: 480
Period size: 147 Copynumber: 1.9 Consensus size: 148
51144519 ATAAGAATAT
*
51144529 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
1 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTAAATAATAATTATGTTT
* * *
51144594 AAATATGAGTAAATTATTTATTATTGAT-ATTAATAATCTTATTAAAATTTCAATAA-AATAATT
66 AAATATGAGTAAATTATTTATT-TTGATAATAAAAAATCTTATTAAAATTTAAATAACAATAATT
51144657 TACCAAAACAAATTTCTGC
130 TACCAAAACAAATTTCTGC
51144676 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTAAATAATAATTATGTTT
1 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTAAATAATAATTATGTTT
*
51144741 AAATATGATTAAATTATTTATTTTGATAATAAAAAATCTTATTAAAATTTAAATAACAATAA
66 AAATATGAGTAAATTATTTATTTTGATAATAAAAAATCTTATTAAAATTTAAATAACAATAA
51144803 CAATAATCAT
Statistics
Matches: 120, Mismatches: 5, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
146 5 0.04
147 110 0.92
148 5 0.04
ACGTcount: A:0.47, C:0.03, G:0.04, T:0.46
Consensus pattern (148 bp):
TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTAAATAATAATTATGTTT
AAATATGAGTAAATTATTTATTTTGATAATAAAAAATCTTATTAAAATTTAAATAACAATAATTT
ACCAAAACAAATTTCTGC
Found at i:51144716 original size:18 final size:17
Alignment explanation
Indices: 51144688--51144722 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
51144678 ATTATTAAGA
*
51144688 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
51144705 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
51144723 TAAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:51144973 original size:45 final size:44
Alignment explanation
Indices: 51144883--51144977 Score: 118
Period size: 45 Copynumber: 2.1 Consensus size: 44
51144873 TTACACCTCT
* * *
51144883 ATTACATTCAACCAAACACAGTTTTACTATTACGCCTATATTCC
1 ATTACATTCAACCAAACACAGATTTACTATTACACATATATTCC
** * *
51144927 ATTACATTCAACCAAACAGTTGATTTGCTATTACACATCTATTCC
1 ATTACATTCAACCAAACA-CAGATTTACTATTACACATATATTCC
51144972 ATTACA
1 ATTACA
51144978 CCTCTAATCC
Statistics
Matches: 43, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
44 18 0.42
45 25 0.58
ACGTcount: A:0.35, C:0.25, G:0.05, T:0.35
Consensus pattern (44 bp):
ATTACATTCAACCAAACACAGATTTACTATTACACATATATTCC
Found at i:51144977 original size:16 final size:16
Alignment explanation
Indices: 51144958--51145025 Score: 100
Period size: 16 Copynumber: 4.2 Consensus size: 16
51144948 GATTTGCTAT
* * *
51144958 TACACATCTATTCCAT
1 TACACCTCTAATCCAA
51144974 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
51144990 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
*
51145006 TACACCTCTAATACAA
1 TACACCTCTAATCCAA
51145022 TACA
1 TACA
51145026 GCGAACCAAA
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 48 1.00
ACGTcount: A:0.38, C:0.34, G:0.00, T:0.28
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:51146035 original size:71 final size:68
Alignment explanation
Indices: 51145944--51146138 Score: 248
Period size: 68 Copynumber: 2.8 Consensus size: 68
51145934 CGATTTATCT
* * * *
51145944 CGTAGCTCTCTTGTCTACATGGTG-TCCTTCACTTGGAATCACTCATGCAACCTAGCTACATCTA
1 CGTAGCTCTCTTGTCTACATGG-GATACATC-C--CGAATCACACATGCAACCTAGCTACATCTA
51146008 TCTCTCA
62 TCTCTCA
* ** *
51146015 CGTAGCTCTCTTGTCTACATGGGATACATCCCGTATCACACATGTGACCTAGCTACATTTATCTC
1 CGTAGCTCTCTTGTCTACATGGGATACATCCCGAATCACACATGCAACCTAGCTACATCTATCTC
51146080 TCA
66 TCA
* **
51146083 CGTAGCTCTCTTGTCTACATGGGATACATCCCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGGATACATCCCGAATCACACATGCAACCTAGCTAC
51146139 TATATAGTAT
Statistics
Matches: 115, Mismatches: 8, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
68 87 0.76
70 2 0.02
71 26 0.23
ACGTcount: A:0.23, C:0.30, G:0.15, T:0.32
Consensus pattern (68 bp):
CGTAGCTCTCTTGTCTACATGGGATACATCCCGAATCACACATGCAACCTAGCTACATCTATCTC
TCA
Found at i:51146078 original size:68 final size:68
Alignment explanation
Indices: 51145993--51146138 Score: 283
Period size: 68 Copynumber: 2.1 Consensus size: 68
51145983 CACTCATGCA
51145993 ACCTAGCTACATCTATCTCTCACGTAGCTCTCTTGTCTACATGGGATACATCCCGTATCACACAT
1 ACCTAGCTACATCTATCTCTCACGTAGCTCTCTTGTCTACATGGGATACATCCCGTATCACACAT
51146058 GTG
66 GTG
*
51146061 ACCTAGCTACATTTATCTCTCACGTAGCTCTCTTGTCTACATGGGATACATCCCGTATCACACAT
1 ACCTAGCTACATCTATCTCTCACGTAGCTCTCTTGTCTACATGGGATACATCCCGTATCACACAT
51146126 GTG
66 GTG
51146129 ACCTAGCTAC
1 ACCTAGCTAC
51146139 TATATAGTAT
Statistics
Matches: 77, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
68 77 1.00
ACGTcount: A:0.24, C:0.31, G:0.14, T:0.31
Consensus pattern (68 bp):
ACCTAGCTACATCTATCTCTCACGTAGCTCTCTTGTCTACATGGGATACATCCCGTATCACACAT
GTG
Found at i:51146171 original size:68 final size:67
Alignment explanation
Indices: 51145993--51146164 Score: 249
Period size: 68 Copynumber: 2.5 Consensus size: 67
51145983 CACTCATGCA
* *
51145993 ACCTAGCTACATCTATCTCTCACGTAGCTCTCTTGTCTACATGGGATACATCCCGTATCACACAT
1 ACCTAGCTACATATATATCT-ACGTAGCTCTCTTGTCTACATGGGATACATCCCGTATCACACAT
51146058 GTG
65 GTG
* *
51146061 ACCTAGCTACATTTATCTCTCACGTAGCTCTCTTGTCTACATGGGATACATCCCGTATCACACAT
1 ACCTAGCTACATATATATCT-ACGTAGCTCTCTTGTCTACATGGGATACATCCCGTATCACACAT
51146126 GTG
65 GTG
51146129 ACCTAGCTACTATATAGTATCT-CGTAGC-CTTCTTGT
1 ACCTAGCTAC-ATATA-TATCTACGTAGCTC-TCTTGT
51146165 ACACATGATG
Statistics
Matches: 98, Mismatches: 3, Indels: 6
0.92 0.03 0.06
Matches are distributed among these distances:
67 1 0.01
68 89 0.91
69 4 0.04
70 4 0.04
ACGTcount: A:0.23, C:0.29, G:0.15, T:0.33
Consensus pattern (67 bp):
ACCTAGCTACATATATATCTACGTAGCTCTCTTGTCTACATGGGATACATCCCGTATCACACATG
TG
Found at i:51151087 original size:39 final size:39
Alignment explanation
Indices: 51150996--51151181 Score: 200
Period size: 39 Copynumber: 4.6 Consensus size: 39
51150986 GCTCCTCGTT
* * *
51150996 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTTAAACTCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAG-T-ATCTCGCA
51151038 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
*
51151077 CAAATTCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
* * *
51151116 CAAATGCCTTCGGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGG-GCTTAGCCCGGA-ATTAGT-ATC-TCGCA
51151157 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGG-CTTAGCCCGGA
51151182 CATCATTCAA
Statistics
Matches: 128, Mismatches: 10, Indels: 14
0.84 0.07 0.09
Matches are distributed among these distances:
39 57 0.45
40 32 0.25
41 24 0.19
42 15 0.12
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (39 bp):
CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
Found at i:51151175 original size:80 final size:82
Alignment explanation
Indices: 51150996--51151181 Score: 217
Period size: 80 Copynumber: 2.3 Consensus size: 82
51150986 GCTCCTCGTT
* *
51150996 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTTAAACTCGCACAAATGCCTTCGGGCTTAGCCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTTAAACTCGCACAAATGCCTTCGGGCTTAGCCC
*
51151060 GGAATTAGTATCTCGCA
66 GGAATTAGTATCTAGCA
* * * *
51151077 CAAATTCCTTCGGG-CTTAGCCCGGAAT-TAG-T-ATCTCGCACAAATGCCTTCGGATCTTAGTC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTTAAACTCGCACAAATGCCTTCGG-GCTTAGCC
51151138 CGGATATT-GTCA-CTTAGCA
65 CGGA-ATTAGT-ATC-TAGCA
51151157 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
51151182 CATCATTCAA
Statistics
Matches: 91, Mismatches: 8, Indels: 13
0.81 0.07 0.12
Matches are distributed among these distances:
78 20 0.22
79 22 0.24
80 35 0.38
81 14 0.15
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTTAAACTCGCACAAATGCCTTCGGGCTTAGCCC
GGAATTAGTATCTAGCA
Found at i:51159106 original size:79 final size:82
Alignment explanation
Indices: 51158995--51159179 Score: 231
Period size: 79 Copynumber: 2.3 Consensus size: 82
51158985 GCTCCTCGTT
* * *
51158995 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGTCTTCGCGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCG-GATCTTAACCC
*
51159058 GGAT-TTAGTAAC-TCGCA
65 GGATATT-GTAACTTAGCA
* **
51159075 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
*
51159138 GATATTGTCACTTAGCA
66 GATATTGTAACTTAGCA
51159155 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
51159180 CATCATTCAA
Statistics
Matches: 92, Mismatches: 8, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
78 2 0.02
79 54 0.59
80 36 0.39
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATTGTAACTTAGCA
Found at i:51159179 original size:40 final size:41
Alignment explanation
Indices: 51158995--51159179 Score: 222
Period size: 40 Copynumber: 4.6 Consensus size: 41
51158985 GCTCCTCGTT
* *
51158995 CAAATGCCTTCGGGACATAGCCCGGTTA-TAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATTAGTAACTCGCA
* * *
51159035 CAAATGTCTTCGCGACTTAACCCGGAT-TTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATTAGTAACTCGCA
*
51159075 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATTAGTAACTCGCA
* * *
51159114 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATTAGTAAC-TCGCA
51159155 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
51159180 CATCATTCAA
Statistics
Matches: 124, Mismatches: 14, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
38 2 0.02
39 33 0.27
40 75 0.60
41 14 0.11
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (41 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATTAGTAACTCGCA
Found at i:51164817 original size:68 final size:68
Alignment explanation
Indices: 51164732--51164877 Score: 274
Period size: 68 Copynumber: 2.1 Consensus size: 68
51164722 CACTCATGCA
*
51164732 ACCTAGCTACATCTATCTCTCACGTAGCTCTCTTGTCTACATGGGATACATCCCGTATCACACAT
1 ACCTAGCTACATCTATCTCTCACGCAGCTCTCTTGTCTACATGGGATACATCCCGTATCACACAT
51164797 GTG
66 GTG
*
51164800 ACCTAGCTACATTTATCTCTCACGCAGCTCTCTTGTCTACATGGGATACATCCCGTATCACACAT
1 ACCTAGCTACATCTATCTCTCACGCAGCTCTCTTGTCTACATGGGATACATCCCGTATCACACAT
51164865 GTG
66 GTG
51164868 ACCTAGCTAC
1 ACCTAGCTAC
51164878 TATATAGTAT
Statistics
Matches: 76, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
68 76 1.00
ACGTcount: A:0.24, C:0.32, G:0.14, T:0.30
Consensus pattern (68 bp):
ACCTAGCTACATCTATCTCTCACGCAGCTCTCTTGTCTACATGGGATACATCCCGTATCACACAT
GTG
Found at i:51164910 original size:68 final size:67
Alignment explanation
Indices: 51164732--51164903 Score: 240
Period size: 68 Copynumber: 2.5 Consensus size: 67
51164722 CACTCATGCA
* *
51164732 ACCTAGCTACATCTATCTCTCACGTAGCTCTCTTGTCTACATGGGATACATCCCGTATCACACAT
1 ACCTAGCTACATATATATCT-ACGTAGCTCTCTTGTCTACATGGGATACATCCCGTATCACACAT
51164797 GTG
65 GTG
* * *
51164800 ACCTAGCTACATTTATCTCTCACGCAGCTCTCTTGTCTACATGGGATACATCCCGTATCACACAT
1 ACCTAGCTACATATATATCT-ACGTAGCTCTCTTGTCTACATGGGATACATCCCGTATCACACAT
51164865 GTG
65 GTG
51164868 ACCTAGCTACTATATAGTATCT-CGTAGC-CTTCTTGT
1 ACCTAGCTAC-ATATA-TATCTACGTAGCTC-TCTTGT
51164904 ACACATGATG
Statistics
Matches: 96, Mismatches: 5, Indels: 6
0.90 0.05 0.06
Matches are distributed among these distances:
67 1 0.01
68 87 0.91
69 4 0.04
70 4 0.04
ACGTcount: A:0.23, C:0.30, G:0.15, T:0.33
Consensus pattern (67 bp):
ACCTAGCTACATATATATCTACGTAGCTCTCTTGTCTACATGGGATACATCCCGTATCACACATG
TG
Found at i:51169672 original size:15 final size:15
Alignment explanation
Indices: 51169652--51169682 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
51169642 TATACAAAAG
51169652 TATGTGCATTATGTT
1 TATGTGCATTATGTT
51169667 TATGTGCATTATGTT
1 TATGTGCATTATGTT
51169682 T
1 T
51169683 CATAATGACC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.19, C:0.06, G:0.19, T:0.55
Consensus pattern (15 bp):
TATGTGCATTATGTT
Found at i:51171150 original size:27 final size:27
Alignment explanation
Indices: 51171107--51171237 Score: 113
Period size: 27 Copynumber: 4.9 Consensus size: 27
51171097 ACACATACAA
*
51171107 GGGTATTTTGGTAATTTCACAAATTAG
1 GGGTATTTCGGTAATTTCACAAATTAG
* * * **
51171134 GGATATATCGGTAATTTTACAAATCGG
1 GGGTATTTCGGTAATTTCACAAATTAG
* *
51171161 GGGTATCTCGGTAAATTT-ACAAGTT-G
1 GGGTATTTCGGT-AATTTCACAAATTAG
* *** *
51171187 GGGTATTTTGGTAATTTTGTAAACTAG
1 GGGTATTTCGGTAATTTCACAAATTAG
*
51171214 GGGTATTTCGATAATTTCACAAAT
1 GGGTATTTCGGTAATTTCACAAAT
51171238 CGAGGGTATT
Statistics
Matches: 79, Mismatches: 22, Indels: 6
0.74 0.21 0.06
Matches are distributed among these distances:
25 5 0.06
26 14 0.18
27 55 0.70
28 5 0.06
ACGTcount: A:0.30, C:0.09, G:0.23, T:0.38
Consensus pattern (27 bp):
GGGTATTTCGGTAATTTCACAAATTAG
Found at i:51175184 original size:30 final size:30
Alignment explanation
Indices: 51175150--51175206 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
51175140 TTTACAAGCC
51175150 TAGGGG-AAAAAGTGTAATTTTGACAAAGTT
1 TAGGGGTAAAAA-TGTAATTTTGACAAAGTT
*
51175180 TAGGGGTAAAAATGTAATTTTGCCAAA
1 TAGGGGTAAAAATGTAATTTTGACAAA
51175207 ATATGGTTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
30 20 0.80
31 5 0.20
ACGTcount: A:0.40, C:0.05, G:0.25, T:0.30
Consensus pattern (30 bp):
TAGGGGTAAAAATGTAATTTTGACAAAGTT
Found at i:51176167 original size:101 final size:101
Alignment explanation
Indices: 51175973--51176254 Score: 345
Period size: 101 Copynumber: 2.8 Consensus size: 101
51175963 ATTGTGAGAA
* * * * *
51175973 CACATGTGTAGTACTATGTGCAGGCTACTATGTGT-TTAAGACAGTTTTAGGTCACGTGTGTAGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACT-CGATA-TCTTAGGTCACGTGTGTAGT
* *
51176037 AATAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGT
64 ACTAAGTGCAGGCTACTACGTGTACCAGATGGTTAGGT
* * * *
51176075 CGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACTCGATATCTTCGATCACGTGTGTAGTAC
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACTCGATATCTTAGGTCACGTGTGTAGTAC
* *
51176140 TAAGTGCAGGCTACTACGTTTATCAGATGGTTAGGT
66 TAAGTGCAGGCTACTACGTGTACCAGATGGTTAGGT
* * * * * *
51176176 CACGTGTTTAGTACTAAGTGCAGGCTACTACGTGTAC-CAGAT-TGTTAGGTCGCATGTGTAGTA
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACTC-GATATCTTAGGTCACGTGTGTAGTA
51176239 CTAAGTGCAGGCTACT
65 CTAAGTGCAGGCTACT
51176255 TTGCATACCA
Statistics
Matches: 155, Mismatches: 23, Indels: 6
0.84 0.12 0.03
Matches are distributed among these distances:
100 33 0.21
101 86 0.55
102 35 0.23
103 1 0.01
ACGTcount: A:0.24, C:0.17, G:0.26, T:0.32
Consensus pattern (101 bp):
CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACTCGATATCTTAGGTCACGTGTGTAGTAC
TAAGTGCAGGCTACTACGTGTACCAGATGGTTAGGT
Found at i:51176253 original size:151 final size:153
Alignment explanation
Indices: 51175977--51176254 Score: 463
Period size: 151 Copynumber: 1.8 Consensus size: 153
51175967 TGAGAACACA
* * *
51175977 TGTGTAGTACTATGTGCAGGCTACTATGTGTTTAAGACAGTTTTAGGTCACGTGTGTAGTAATAA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTTTAAGACAGTGTTAGGTCACGTGTGTAGTAATAA
51176042 GTGCAGGCTACTACGTGTACCAGATTGTTAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATG
66 GTGCAGGCTACTACGTGTACCAGATTGTTAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATG
51176107 CGTACTCGATATCTTCGATCACG
131 CGTACTCGATATCTTCGATCACG
* * * *
51176130 TGTGTAGTACTAAGTGCAGGCTACTACGT-TTATCAGA-TG-GTTAGGTCACGTGTTTAGTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTT-TAAGACAGTGTTAGGTCACGTGTGTAGTAATA
51176192 AGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCGCATGTGTAGTACTAAGTGCAGGCTACT
65 AGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCGCATGTGTAGTACTAAGTGCAGGCTACT
51176255 TTGCATACCA
Statistics
Matches: 117, Mismatches: 7, Indels: 4
0.91 0.05 0.03
Matches are distributed among these distances:
151 83 0.71
152 3 0.03
153 31 0.26
ACGTcount: A:0.24, C:0.17, G:0.27, T:0.32
Consensus pattern (153 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTTTAAGACAGTGTTAGGTCACGTGTGTAGTAATAA
GTGCAGGCTACTACGTGTACCAGATTGTTAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATG
CGTACTCGATATCTTCGATCACG
Found at i:51176266 original size:50 final size:50
Alignment explanation
Indices: 51175973--51176254 Score: 327
Period size: 50 Copynumber: 5.6 Consensus size: 50
51175963 ATTGTGAGAA
* * *
51175973 CACATGTGTAGTACTATGTGCAGGCTACTATGTGTTTAAGACAG-TT-TTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTG--T-A-CCAGATTGTTAGGT
* *
51176025 CACGTGTGTAGTAATAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGT
* * * * * *
51176075 CGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACTC-GATATCTTCGAT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTAC-CAGAT-TGTTAGGT
* * * *
51176126 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTTTATCAGATGGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGT
* *
51176176 CACGTGTTTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGT
*
51176226 CGCATGTGTAGTACTAAGTGCAGGCTACT
1 CACATGTGTAGTACTAAGTGCAGGCTACT
51176255 TTGCATACCA
Statistics
Matches: 195, Mismatches: 30, Indels: 12
0.82 0.13 0.05
Matches are distributed among these distances:
48 3 0.02
49 3 0.02
50 119 0.61
51 40 0.21
52 30 0.15
ACGTcount: A:0.24, C:0.17, G:0.26, T:0.32
Consensus pattern (50 bp):
CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGT
Found at i:51178183 original size:18 final size:20
Alignment explanation
Indices: 51178121--51178184 Score: 87
Period size: 20 Copynumber: 3.3 Consensus size: 20
51178111 CGGGTTGAGG
*
51178121 ACACGAGCGTGTCCAGAGCC
1 ACACGGGCGTGTCCAGAGCC
*
51178141 ACACGGGCGTGTCCAGAGTC
1 ACACGGGCGTGTCCAGAGCC
*
51178161 ACACGGGCGTGT-GAGA-CC
1 ACACGGGCGTGTCCAGAGCC
51178179 ACACGG
1 ACACGG
51178185 CCTACCCAGA
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
18 7 0.17
19 3 0.08
20 30 0.75
ACGTcount: A:0.23, C:0.31, G:0.34, T:0.11
Consensus pattern (20 bp):
ACACGGGCGTGTCCAGAGCC
Found at i:51180339 original size:40 final size:40
Alignment explanation
Indices: 51180245--51180389 Score: 184
Period size: 40 Copynumber: 3.6 Consensus size: 40
51180235 TACTCGAATG
*
51180245 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGCGACT
* *
51180286 ACATCCGGACTAAGAT-CCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGCGACT
* * *
51180326 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
* * *
51180366 ATATCTGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
51180390 CTTGTGCGAG
Statistics
Matches: 91, Mismatches: 11, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
39 1 0.01
40 61 0.67
41 28 0.31
42 1 0.01
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
Found at i:51191500 original size:15 final size:15
Alignment explanation
Indices: 51191471--51191520 Score: 66
Period size: 15 Copynumber: 3.4 Consensus size: 15
51191461 CAAAGATAAC
*
51191471 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
51191485 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
51191500 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
51191515 AAGAAA
1 AAGAAA
51191521 CCCAAGATAC
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
14 8 0.26
15 23 0.74
ACGTcount: A:0.60, C:0.12, G:0.18, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:51191529 original size:15 final size:15
Alignment explanation
Indices: 51191482--51191529 Score: 53
Period size: 15 Copynumber: 3.2 Consensus size: 15
51191472 AGAAAACCGA
51191482 ATAAAGAAATCC-AG
1 ATAAAGAAATCCAAG
* *
51191496 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
51191512 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
51191527 ATA
1 ATA
51191530 CGATACTATG
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
15 26 0.96
16 1 0.04
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:51204191 original size:40 final size:40
Alignment explanation
Indices: 51204147--51204374 Score: 343
Period size: 40 Copynumber: 5.7 Consensus size: 40
51204137 GCTACTTGCT
51204147 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
51204187 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* *
51204227 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * **
51204267 CAAATGCCTTCGGGACTTAGCTCGGATATAGTAGTTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * * *
51204307 CAAATGCCTTCAGG-CTTAGCCCGG-AATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
51204346 CAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
51204375 CATCCAAATA
Statistics
Matches: 172, Mismatches: 13, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
38 1 0.01
39 30 0.17
40 140 0.81
41 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:51210330 original size:18 final size:17
Alignment explanation
Indices: 51210302--51210336 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
51210292 ATTATTAAGA
*
51210302 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
51210319 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
51210337 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:51210474 original size:18 final size:17
Alignment explanation
Indices: 51210446--51210480 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
51210436 ATTATTAACC
*
51210446 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
51210463 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
51210481 TAAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:51210691 original size:44 final size:45
Alignment explanation
Indices: 51210642--51210736 Score: 138
Period size: 45 Copynumber: 2.1 Consensus size: 45
51210632 TTACACCTCT
* *
51210642 ATTACATTCAACCAAACA-CAGTTTTACTATTACGCCTCTATTCC
1 ATTACATTCAACCAAACAGCAGATTTACTATTACACCTCTATTCC
** *
51210686 ATTACATTCAACCAAACAGTTGATTTGCTATTACACCTCTATTCC
1 ATTACATTCAACCAAACAGCAGATTTACTATTACACCTCTATTCC
51210731 ATTACA
1 ATTACA
51210737 CCTCTAATCC
Statistics
Matches: 45, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
44 18 0.40
45 27 0.60
ACGTcount: A:0.33, C:0.27, G:0.05, T:0.35
Consensus pattern (45 bp):
ATTACATTCAACCAAACAGCAGATTTACTATTACACCTCTATTCC
Found at i:51210736 original size:16 final size:16
Alignment explanation
Indices: 51210715--51210747 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
51210705 TTGATTTGCT
*
51210715 ATTACACCTCTATTCC
1 ATTACACCTCTAATCC
51210731 ATTACACCTCTAATCC
1 ATTACACCTCTAATCC
51210747 A
1 A
51210748 ATCCAATACA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.30, C:0.36, G:0.00, T:0.33
Consensus pattern (16 bp):
ATTACACCTCTAATCC
Found at i:51210757 original size:21 final size:21
Alignment explanation
Indices: 51210728--51210770 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
51210718 ACACCTCTAT
*
51210728 TCCATTACACCTCTAATCCAA
1 TCCAATACACCTCTAATCCAA
51210749 TCCAATACACCTCTAATCCAA
1 TCCAATACACCTCTAATCCAA
51210770 T
1 T
51210771 ACAGCGAACC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.35, C:0.37, G:0.00, T:0.28
Consensus pattern (21 bp):
TCCAATACACCTCTAATCCAA
Found at i:51211568 original size:10 final size:10
Alignment explanation
Indices: 51211555--51211590 Score: 56
Period size: 10 Copynumber: 3.6 Consensus size: 10
51211545 AAAACAAGCG
51211555 AAAAAAGTGA
1 AAAAAAGTGA
51211565 AAAAAAGCT-A
1 AAAAAAG-TGA
51211575 AAAAAAGTGA
1 AAAAAAGTGA
51211585 AAAAAA
1 AAAAAA
51211591 TTTAATTTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
9 1 0.04
10 22 0.92
11 1 0.04
ACGTcount: A:0.75, C:0.03, G:0.14, T:0.08
Consensus pattern (10 bp):
AAAAAAGTGA
Found at i:51217364 original size:42 final size:43
Alignment explanation
Indices: 51217255--51217368 Score: 108
Period size: 43 Copynumber: 2.7 Consensus size: 43
51217245 AGCTCGTACA
* * * *
51217255 ATGCCAAC-GTCCCAGACGTGGTCTTACATGTAATCAAATATCG
1 ATGCC-ACTGTCCCAAACATGGTCTTACACGAAATCAAATATCG
* *
51217298 ATGCCACTGTCCCAAATAGGGTCTTACACGAAATCAAATA-CG
1 ATGCCACTGTCCCAAACATGGTCTTACACGAAATCAAATATCG
* * *
51217340 ACTTCGA-TGTCCCATACATGGTCTTACAC
1 A-TGCCACTGTCCCAAACATGGTCTTACAC
51217369 ATAAATCATA
Statistics
Matches: 58, Mismatches: 11, Indels: 5
0.78 0.15 0.07
Matches are distributed among these distances:
42 24 0.41
43 34 0.59
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.25
Consensus pattern (43 bp):
ATGCCACTGTCCCAAACATGGTCTTACACGAAATCAAATATCG
Found at i:51221221 original size:28 final size:28
Alignment explanation
Indices: 51221183--51221258 Score: 143
Period size: 28 Copynumber: 2.7 Consensus size: 28
51221173 AGTGAATAAC
*
51221183 ACAGTCTGGGCCTAAGCCCAGATTAGTA
1 ACAGTCTGGGCCTGAGCCCAGATTAGTA
51221211 ACAGTCTGGGCCTGAGCCCAGATTAGTA
1 ACAGTCTGGGCCTGAGCCCAGATTAGTA
51221239 ACAGTCTGGGCCTGAGCCCA
1 ACAGTCTGGGCCTGAGCCCA
51221259 TTATGGAACA
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
28 47 1.00
ACGTcount: A:0.25, C:0.28, G:0.28, T:0.20
Consensus pattern (28 bp):
ACAGTCTGGGCCTGAGCCCAGATTAGTA
Found at i:51221436 original size:26 final size:27
Alignment explanation
Indices: 51221407--51221482 Score: 84
Period size: 26 Copynumber: 2.9 Consensus size: 27
51221397 CAACACACTG
51221407 ATATCACAGCAAAGCTGCCAGTAAT-A
1 ATATCACAGCAAAGCTGCCAGTAATCA
* ** *
51221433 ATATCGCAGCAAAGCTGTTAAT-ATCA
1 ATATCACAGCAAAGCTGCCAGTAATCA
* *
51221459 GTAACACAGCAAAGCTGCCAGTAA
1 ATATCACAGCAAAGCTGCCAGTAA
51221483 CAGTATATGT
Statistics
Matches: 38, Mismatches: 10, Indels: 3
0.75 0.20 0.06
Matches are distributed among these distances:
25 2 0.05
26 35 0.92
27 1 0.03
ACGTcount: A:0.41, C:0.22, G:0.17, T:0.20
Consensus pattern (27 bp):
ATATCACAGCAAAGCTGCCAGTAATCA
Found at i:51225321 original size:26 final size:27
Alignment explanation
Indices: 51225291--51225368 Score: 106
Period size: 26 Copynumber: 3.0 Consensus size: 27
51225281 GCCAATACAC
51225291 CAATATCGCAGCAAAGCTGCCAGTAAT
1 CAATATCGCAGCAAAGCTGCCAGTAAT
*
51225318 -AATATCACAGCAAAGCTGCCAGT-AT
1 CAATATCGCAGCAAAGCTGCCAGTAAT
* * *
51225343 CAGTAACGCAGCAAAGCTACCAGTAA
1 CAATATCGCAGCAAAGCTGCCAGTAA
51225369 CAGTATATGT
Statistics
Matches: 44, Mismatches: 5, Indels: 4
0.83 0.09 0.08
Matches are distributed among these distances:
25 2 0.05
26 41 0.93
27 1 0.02
ACGTcount: A:0.40, C:0.26, G:0.18, T:0.17
Consensus pattern (27 bp):
CAATATCGCAGCAAAGCTGCCAGTAAT
Found at i:51225822 original size:17 final size:18
Alignment explanation
Indices: 51225800--51225844 Score: 56
Period size: 19 Copynumber: 2.5 Consensus size: 18
51225790 ATCCGTGTGA
*
51225800 GGCCCACAAGCCCAT-TG
1 GGCCCACAAGCCCATCAG
*
51225817 GGCCCACACGGCCCATCAG
1 GGCCCACA-AGCCCATCAG
51225836 GGCCCACAA
1 GGCCCACAA
51225845 CAACCTAAGT
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
17 8 0.35
18 6 0.26
19 9 0.39
ACGTcount: A:0.24, C:0.44, G:0.24, T:0.07
Consensus pattern (18 bp):
GGCCCACAAGCCCATCAG
Found at i:51233007 original size:42 final size:44
Alignment explanation
Indices: 51232930--51233119 Score: 214
Period size: 42 Copynumber: 4.4 Consensus size: 44
51232920 AGTCGTGGTT
* *
51232930 TTACATGT-AATCAAATATCGATGCCACTGTCCCAGATAGGGTC
1 TTACACGTAAATCAAATATCGATGCCACTGTCCCAGACAGGGTC
* *
51232973 TTACACG-AAATCAAATA-CGATGTCGA-TGTCCCAGACATGGTC
1 TTACACGTAAATCAAATATCGATG-CCACTGTCCCAGACAGGGTC
* *
51233015 TTACACGTAAATCATATATCGATGCCACTATCCCAGACAGGGTC
1 TTACACGTAAATCAAATATCGATGCCACTGTCCCAGACAGGGTC
* * **
51233059 TTACACG-AAATCAAATA-CGATGCTGA-TGTCCCAGAAATCGTC
1 TTACACGTAAATCAAATATCGATGC-CACTGTCCCAGACAGGGTC
*
51233101 TTACACGTAAATCATATAT
1 TTACACGTAAATCAAATAT
51233120 GGAATCCTAT
Statistics
Matches: 124, Mismatches: 15, Indels: 15
0.81 0.10 0.10
Matches are distributed among these distances:
42 51 0.41
43 47 0.38
44 26 0.21
ACGTcount: A:0.34, C:0.24, G:0.16, T:0.26
Consensus pattern (44 bp):
TTACACGTAAATCAAATATCGATGCCACTGTCCCAGACAGGGTC
Found at i:51233041 original size:86 final size:86
Alignment explanation
Indices: 51232925--51233119 Score: 304
Period size: 86 Copynumber: 2.3 Consensus size: 86
51232915 GTCTCAGTCG
* * * * *
51232925 TGGTTTTACATGT-AATCAAATATCGATGCCACTGTCCCAGATAGGGTCTTACACGAAATCAAAT
1 TGGTCTTACACGTAAATCATATATCGATGCCACTATCCCAGACAGGGTCTTACACGAAATCAAAT
*
51232989 ACGATG-TCGATGTCCCAGACA
66 ACGATGCT-GATGTCCCAGAAA
51233010 TGGTCTTACACGTAAATCATATATCGATGCCACTATCCCAGACAGGGTCTTACACGAAATCAAAT
1 TGGTCTTACACGTAAATCATATATCGATGCCACTATCCCAGACAGGGTCTTACACGAAATCAAAT
51233075 ACGATGCTGATGTCCCAGAAA
66 ACGATGCTGATGTCCCAGAAA
*
51233096 TCGTCTTACACGTAAATCATATAT
1 TGGTCTTACACGTAAATCATATAT
51233120 GGAATCCTAT
Statistics
Matches: 101, Mismatches: 7, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
85 11 0.11
86 89 0.88
87 1 0.01
ACGTcount: A:0.33, C:0.23, G:0.17, T:0.27
Consensus pattern (86 bp):
TGGTCTTACACGTAAATCATATATCGATGCCACTATCCCAGACAGGGTCTTACACGAAATCAAAT
ACGATGCTGATGTCCCAGAAA
Found at i:51240712 original size:44 final size:43
Alignment explanation
Indices: 51240662--51240780 Score: 152
Period size: 42 Copynumber: 2.8 Consensus size: 43
51240652 GATGTTGATG
51240662 TCCCAGACATGGTCTTACACATAAATCATATATCGATG-CCACTA
1 TCCCAGACATGGTCTTACACATAAATCATATAT-GATGTCCA-TA
* * * * *
51240706 TCCCAGACAGGGTCTTACAC-GAAATCAAATATGATGTCGATG
1 TCCCAGACATGGTCTTACACATAAATCATATATGATGTCCATA
*
51240748 TCCCAGACATAGTCTTACACATAAATCATATAT
1 TCCCAGACATGGTCTTACACATAAATCATATAT
51240781 TGGATCCCAT
Statistics
Matches: 64, Mismatches: 9, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
42 23 0.36
43 22 0.34
44 19 0.30
ACGTcount: A:0.35, C:0.24, G:0.13, T:0.27
Consensus pattern (43 bp):
TCCCAGACATGGTCTTACACATAAATCATATATGATGTCCATA
Found at i:51240742 original size:86 final size:86
Alignment explanation
Indices: 51240605--51240780 Score: 255
Period size: 86 Copynumber: 2.0 Consensus size: 86
51240595 CGTTAATCCA
* * ** * *
51240605 ATATCGATGCCATTGTCCCAGACAGGGTCTTGTATCAAATGAAACACGATGTTGATGTCCCAGAC
1 ATATCGATGCCACTATCCCAGACAGGGTCTTACATCAAATCAAACACGATGTCGATGTCCCAGAC
*
51240670 ATGGTCTTACACATAAATCAT
66 ATAGTCTTACACATAAATCAT
* *
51240691 ATATCGATGCCACTATCCCAGACAGGGTCTTACA-CGAAATCAAATATGATGTCGATGTCCCAGA
1 ATATCGATGCCACTATCCCAGACAGGGTCTTACATC-AAATCAAACACGATGTCGATGTCCCAGA
51240755 CATAGTCTTACACATAAATCAT
65 CATAGTCTTACACATAAATCAT
51240777 ATAT
1 ATAT
51240781 TGGATCCCAT
Statistics
Matches: 80, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
85 1 0.01
86 79 0.99
ACGTcount: A:0.34, C:0.23, G:0.16, T:0.27
Consensus pattern (86 bp):
ATATCGATGCCACTATCCCAGACAGGGTCTTACATCAAATCAAACACGATGTCGATGTCCCAGAC
ATAGTCTTACACATAAATCAT
Found at i:51240763 original size:42 final size:44
Alignment explanation
Indices: 51240651--51240780 Score: 149
Period size: 44 Copynumber: 3.0 Consensus size: 44
51240641 AAATGAAACA
* * *
51240651 CGATGTTGATGTCCCAGACATGGTCTTACACATAAATCATATAT
1 CGATGTCGATGTCCCAGACATGGTCTTACACAGAAATCAAATAT
* * *
51240695 CGATG-CCACTATCCCAGACAGGGTCTTACAC-GAAATCAAATAT
1 CGATGTCGA-TGTCCCAGACATGGTCTTACACAGAAATCAAATAT
* * *
51240738 -GATGTCGATGTCCCAGACATAGTCTTACACATAAATCATATAT
1 CGATGTCGATGTCCCAGACATGGTCTTACACAGAAATCAAATAT
51240781 TGGATCCCAT
Statistics
Matches: 71, Mismatches: 12, Indels: 7
0.79 0.13 0.08
Matches are distributed among these distances:
42 23 0.32
43 23 0.32
44 25 0.35
ACGTcount: A:0.34, C:0.23, G:0.15, T:0.28
Consensus pattern (44 bp):
CGATGTCGATGTCCCAGACATGGTCTTACACAGAAATCAAATAT
Found at i:51241246 original size:20 final size:19
Alignment explanation
Indices: 51241204--51241246 Score: 50
Period size: 20 Copynumber: 2.2 Consensus size: 19
51241194 TAATGGAAGG
* *
51241204 TCATTAATGTCCATTAACT
1 TCATTAATGTCCAATAACA
*
51241223 TCATTAATAGTCTAATAACA
1 TCATTAAT-GTCCAATAACA
51241243 TCAT
1 TCAT
51241247 AAGGACTCCA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
19 8 0.40
20 12 0.60
ACGTcount: A:0.37, C:0.19, G:0.05, T:0.40
Consensus pattern (19 bp):
TCATTAATGTCCAATAACA
Found at i:51255812 original size:40 final size:40
Alignment explanation
Indices: 51255611--51255804 Score: 327
Period size: 40 Copynumber: 4.9 Consensus size: 40
51255601 ATTCGGATTG
51255611 ATAACCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
51255650 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
51255690 ATAACCGGGCCAAGTCCCGAAGGCAATTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
51255730 ATAACTGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
51255770 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCGAG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAG
51255805 AAGCTATATC
Statistics
Matches: 145, Mismatches: 9, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
39 13 0.09
40 132 0.91
ACGTcount: A:0.26, C:0.23, G:0.28, T:0.23
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:51255812 original size:80 final size:80
Alignment explanation
Indices: 51255611--51255831 Score: 331
Period size: 80 Copynumber: 2.8 Consensus size: 80
51255601 ATTCGGATTG
*
51255611 ATAACCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCTGGGCTAAGTCCCGAAGGCA
*
51255675 TTTGTGCGAGTTACT
66 ATTGTGCGAGTTACT
* * *
51255690 ATAACCGGGCCAAGTCCCGAAGGCAATTGTGCGAGTTACTATAACTGGGCTAAGTCCCGAAGGCA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCTGGGCTAAGTCCCGAAGGCA
51255755 ATTGTGCGAGTTACT
66 ATTGTGCGAGTTACT
* * **
51255770 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-AAGCTATATCT-GGCTAAACCCCGAAGG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCTGGGCTAAGTCCCGAAGG
51255832 TACTTGGTTT
Statistics
Matches: 128, Mismatches: 12, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
79 28 0.22
80 100 0.78
ACGTcount: A:0.27, C:0.23, G:0.28, T:0.22
Consensus pattern (80 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCTGGGCTAAGTCCCGAAGGCA
ATTGTGCGAGTTACT
Found at i:51258164 original size:39 final size:40
Alignment explanation
Indices: 51258121--51258288 Score: 112
Period size: 40 Copynumber: 4.2 Consensus size: 40
51258111 CTCGTTCAAG
* * *
51258121 TGCCTTCGGGACATAGCCCGG-TTATAGTAACTCATAC-AA
1 TGCCTTCGGGACATAACCCGGATTATA-AAACTCACACGAA
* * * *
51258160 TGCCTTTGGGACTTAACCCGGATTTTAAAACTCGCACGAA
1 TGCCTTCGGGACATAACCCGGATTATAAAACTCACACGAA
* * * * *
51258200 TGCCTTCGGGACTTAACTCGGAATTAGT--ATCTCGCACAAA
1 TGCCTTCGGGACATAACCCGG-ATTA-TAAAACTCACACGAA
* * * * *
51258240 GGCCTTCGGGACTTAACCCGGAATTA-ATAACTCGCACAAA
1 TGCCTTCGGGACATAACCCGG-ATTATAAAACTCACACGAA
51258280 TGCCTTCGG
1 TGCCTTCGG
51258289 ATCTTAGTCC
Statistics
Matches: 107, Mismatches: 16, Indels: 11
0.80 0.12 0.08
Matches are distributed among these distances:
39 25 0.23
40 78 0.73
41 3 0.03
42 1 0.01
ACGTcount: A:0.27, C:0.26, G:0.21, T:0.26
Consensus pattern (40 bp):
TGCCTTCGGGACATAACCCGGATTATAAAACTCACACGAA
Found at i:51258211 original size:40 final size:39
Alignment explanation
Indices: 51258158--51258288 Score: 172
Period size: 40 Copynumber: 3.3 Consensus size: 39
51258148 TAACTCATAC
* * *
51258158 AATGCCTTTGGGACTTAACCCGGATTTTAAAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGA-ATTAAAACTCGCACA
* * *
51258198 AATGCCTTCGGGACTTAACTCGGAATTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTA-AAACTCGCACA
*
51258238 AAGGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAA-AACTCGCACA
51258278 AATGCCTTCGG
1 AATGCCTTCGG
51258289 ATCTTAGTCC
Statistics
Matches: 78, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 3 0.04
40 75 0.96
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGAATTAAAACTCGCACA
Found at i:51258325 original size:80 final size:79
Alignment explanation
Indices: 51258156--51258341 Score: 211
Period size: 80 Copynumber: 2.3 Consensus size: 79
51258146 AGTAACTCAT
* * * *
51258156 ACAATGCCTTTGGGACTTAACCCGGATTTTAAAACTCGCACGAATGCCTTCGGGACTTAACTCGG
1 ACAAAGCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATGCCTTCGGGACTTAACTCGG
*
51258221 AATTAGTATCTCGC
66 AATTAGTATCTAGC
*
51258235 ACAAAGGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACAAATGCCTTC-GGATCTT-AGT
1 ACAAA-GCCTTCGGGACTTAACCCGGATATTAA-AACTCGCACAAATGCCTTCGGGA-CTTAACT
51258297 CCGG-ATATAGTCA-CTTAGC
63 -CGGAAT-TAGT-ATC-TAGC
*
51258316 ACAAAGCCTTCGGGACTTAGCCCGGA
1 ACAAAGCCTTCGGGACTTAACCCGGA
51258342 CATCATTCAA
Statistics
Matches: 93, Mismatches: 7, Indels: 13
0.82 0.06 0.12
Matches are distributed among these distances:
79 15 0.16
80 69 0.74
81 9 0.10
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (79 bp):
ACAAAGCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATGCCTTCGGGACTTAACTCGG
AATTAGTATCTAGC
Found at i:51266082 original size:39 final size:40
Alignment explanation
Indices: 51266039--51266206 Score: 148
Period size: 40 Copynumber: 4.2 Consensus size: 40
51266029 CTCGTTCAAG
* * * *
51266039 TGCCTTCGGGACATAGCCCGG-TTATAGTAACTCATAC-AA
1 TGCCTTCGGGACTTAACCCGGATTATA-AAACTCACACGAA
* *
51266078 TGCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACGAA
1 TGCCTTCGGGACTTAACCCGGATTATAAAACTCACACGAA
* * *
51266118 TGCCTTCGGGACTTAACCCGGAATTAGT--ATCTCGCACAAA
1 TGCCTTCGGGACTTAACCCGG-ATTA-TAAAACTCACACGAA
* * * *
51266158 GGCCTTCGGGACTTAACCCGGAATTA-ATAACTCGCACAAA
1 TGCCTTCGGGACTTAACCCGG-ATTATAAAACTCACACGAA
51266198 TGCCTTCGG
1 TGCCTTCGG
51266207 ATCTTAGTCC
Statistics
Matches: 111, Mismatches: 12, Indels: 11
0.83 0.09 0.08
Matches are distributed among these distances:
39 26 0.23
40 81 0.73
41 3 0.03
42 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
TGCCTTCGGGACTTAACCCGGATTATAAAACTCACACGAA
Done.