Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100714657
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 3970000 characters in sequence are not A, C, G, or T
File 162 of 318
Found at i:51266190 original size:80 final size:80
Alignment explanation
Indices: 51266074--51266259 Score: 229
Period size: 80 Copynumber: 2.3 Consensus size: 80
51266064 AGTAACTCAT
* * *
51266074 ACAATGCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACGAATGCCTTCGGGA-CTTAACCCG
1 ACAAAGCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATGCCTTC-GGATCTTAACCCG
*
51266138 GA-ATTAGT-A-TCTCGC
65 GATA-TAGTCACT-TAGC
**
51266153 ACAAAGGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACAAATGCCTTCGGATCTTAGTCC
1 ACAAA-GCCTTCGGGACTTAACCCGGATATTAA-AACTCGCACAAATGCCTTCGGATCTTAACCC
51266217 GGATATAGTCACTTAGC
64 GGATATAGTCACTTAGC
*
51266234 ACAAAGCCTTCGGGACTTAGCCCGGA
1 ACAAAGCCTTCGGGACTTAACCCGGA
51266260 CAGCATTCAA
Statistics
Matches: 94, Mismatches: 7, Indels: 11
0.84 0.06 0.10
Matches are distributed among these distances:
79 11 0.12
80 72 0.77
81 10 0.11
82 1 0.01
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (80 bp):
ACAAAGCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATGCCTTCGGATCTTAACCCGG
ATATAGTCACTTAGC
Found at i:51266219 original size:40 final size:40
Alignment explanation
Indices: 51266076--51266259 Score: 205
Period size: 40 Copynumber: 4.6 Consensus size: 40
51266066 TAACTCATAC
* *
51266076 AATGCCTTCGGGACTTAACCCGGATTTTAA-AACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACA
* *
51266116 AATGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
*
51266156 AAGGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
** * * *
51266196 AATGCCTTC-GGATCTTAGTCCGG-ATATAGTCACTTAGCACA
1 AATGCCTTCGGGA-CTTAACCCGGAAT-TAATAAC-TCGCACA
*
51266237 AA-GCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
51266260 CAGCATTCAA
Statistics
Matches: 124, Mismatches: 14, Indels: 11
0.83 0.09 0.07
Matches are distributed among these distances:
39 8 0.06
40 105 0.85
41 11 0.09
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
Found at i:51272213 original size:40 final size:40
Alignment explanation
Indices: 51272154--51272257 Score: 172
Period size: 40 Copynumber: 2.6 Consensus size: 40
51272144 TGGATGATAA
* *
51272154 CCGGGCTAAGTCCCAAAGGCATTTGTGCGAGCTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGCTACTATAT
*
51272194 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGCTACTATAT
*
51272234 CCGGGCTATGTCCCGAAGGCATTG
1 CCGGGCTAAGTCCCGAAGGCATTG
51272258 AGTGAGTAGC
Statistics
Matches: 60, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 60 1.00
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGCTACTATAT
Found at i:51279887 original size:40 final size:40
Alignment explanation
Indices: 51279792--51280009 Score: 232
Period size: 40 Copynumber: 5.5 Consensus size: 40
51279782 TGGATGATAA
* *
51279792 CCGGGCTAAGTCCCGAAGGCATTT-TCCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGT--GCGAGTTACTA-TAT
* *
51279833 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
51279873 CCGGGCCAAGTCCCGAAGGCATTTGTGCAAGCTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
51279913 CTGGGCTAAGTCCCGAAGGCA-TTGATGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTG-TGCGAGTTACTATAT
* * *
51279953 CCGGTCTATGTCCCGAAGGCA-TTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
51279992 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
51280010 TACTTGGCTT
Statistics
Matches: 152, Mismatches: 21, Indels: 11
0.83 0.11 0.06
Matches are distributed among these distances:
38 14 0.09
39 16 0.11
40 97 0.64
41 24 0.16
42 1 0.01
ACGTcount: A:0.23, C:0.24, G:0.27, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:51285999 original size:40 final size:40
Alignment explanation
Indices: 51285798--51285985 Score: 306
Period size: 40 Copynumber: 4.7 Consensus size: 40
51285788 ATTCGGATTG
*
51285798 ATAACCAGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * *
51285837 ATATCTGGGCTAAGTCTCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
51285877 ATAACCGGGCCAAGTCCCGAAGGCAATTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
51285917 ATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
51285957 ATAACCGGGCTAAGTCCCGAAGGCATTTG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTG
51285986 AGCAAGAAGC
Statistics
Matches: 137, Mismatches: 11, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 11 0.08
40 126 0.92
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.24
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:51290404 original size:12 final size:12
Alignment explanation
Indices: 51290387--51290417 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
51290377 TCGTGTCATG
51290387 CACATGGCCTAC
1 CACATGGCCTAC
*
51290399 CACATGGCCTAG
1 CACATGGCCTAC
51290411 CACATGG
1 CACATGG
51290418 TTGTGTGGCC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.26, C:0.35, G:0.23, T:0.16
Consensus pattern (12 bp):
CACATGGCCTAC
Found at i:51293516 original size:45 final size:44
Alignment explanation
Indices: 51293431--51293516 Score: 109
Period size: 45 Copynumber: 1.9 Consensus size: 44
51293421 TATGTAATCT
* *
51293431 GAACTCATTGAGTTGTGCCTGAGTTCATGATATATGTGACATCC
1 GAACTCACTGAGTTGTGCCTGAGTTCATGATATATATGACATCC
* ** *
51293475 GAACTCACTGAGTTGTGGTCTGAGTTTGTGATATGTATGACA
1 GAACTCACTGAGTTGT-GCCTGAGTTCATGATATATATGACA
51293517 CATGTTTTGG
Statistics
Matches: 35, Mismatches: 6, Indels: 1
0.83 0.14 0.02
Matches are distributed among these distances:
44 15 0.43
45 20 0.57
ACGTcount: A:0.24, C:0.15, G:0.26, T:0.35
Consensus pattern (44 bp):
GAACTCACTGAGTTGTGCCTGAGTTCATGATATATATGACATCC
Found at i:51306456 original size:25 final size:25
Alignment explanation
Indices: 51306409--51306456 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
51306399 TTATAGTATG
* * * *
51306409 AAAATGACTGTTTTGCCCTTAGGTA
1 AAAATGACTATTATACCCCTAGGTA
51306434 AAAATGACTATTATACCCCTAGG
1 AAAATGACTATTATACCCCTAGG
51306457 GTTTAATTAT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.33, C:0.19, G:0.17, T:0.31
Consensus pattern (25 bp):
AAAATGACTATTATACCCCTAGGTA
Found at i:51306518 original size:11 final size:11
Alignment explanation
Indices: 51306504--51306559 Score: 66
Period size: 11 Copynumber: 5.5 Consensus size: 11
51306494 CAATATTGAT
51306504 ATGATATGCAC
1 ATGATATGCAC
*
51306515 ATGATATG--T
1 ATGATATGCAC
51306524 ATGATATGCAC
1 ATGATATGCAC
*
51306535 ATGATATG--T
1 ATGATATGCAC
51306544 ATGATATGCAC
1 ATGATATGCAC
51306555 ATGAT
1 ATGAT
51306560 GTGTATGACA
Statistics
Matches: 37, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
9 16 0.43
11 21 0.57
ACGTcount: A:0.36, C:0.11, G:0.20, T:0.34
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:51306581 original size:20 final size:20
Alignment explanation
Indices: 51306503--51306579 Score: 136
Period size: 20 Copynumber: 3.9 Consensus size: 20
51306493 ACAATATTGA
51306503 TATGATATGCACATGATATG
1 TATGATATGCACATGATATG
51306523 TATGATATGCACATGATATG
1 TATGATATGCACATGATATG
*
51306543 TATGATATGCACATGATGTG
1 TATGATATGCACATGATATG
*
51306563 TATGACATGCACATGAT
1 TATGATATGCACATGAT
51306580 GTATTCATAA
Statistics
Matches: 55, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 55 1.00
ACGTcount: A:0.34, C:0.12, G:0.21, T:0.34
Consensus pattern (20 bp):
TATGATATGCACATGATATG
Found at i:51306639 original size:26 final size:26
Alignment explanation
Indices: 51306610--51306694 Score: 79
Period size: 25 Copynumber: 3.3 Consensus size: 26
51306600 TTGGGTATTT
51306610 GCCCCAGTTTATTGAAAAGGGCTTAG
1 GCCCCAGTTTATTGAAAAGGGCTTAG
* ** **
51306636 GCCCCAATTTACCG-AAAGGGCTTTT
1 GCCCCAGTTTATTGAAAAGGGCTTAG
51306661 GCCCCAG-TTATT-AAAAGAGGC-TAG
1 GCCCCAGTTTATTGAAAAG-GGCTTAG
51306685 GCCTCCAGTT
1 GCC-CCAGTT
51306695 ATATGATAAA
Statistics
Matches: 45, Mismatches: 10, Indels: 8
0.71 0.16 0.13
Matches are distributed among these distances:
24 11 0.24
25 22 0.49
26 12 0.27
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (26 bp):
GCCCCAGTTTATTGAAAAGGGCTTAG
Found at i:51312698 original size:75 final size:74
Alignment explanation
Indices: 51312619--51312767 Score: 192
Period size: 75 Copynumber: 2.0 Consensus size: 74
51312609 GTAAAAGAAT
* ** * *
51312619 TATTTTTTTATAATTTTATTATTTTTTATTACATTTAAATTATTTGTGATTTAATTGT-TACTTA
1 TATTTTTTAATAATTTTAAAATTTATTATTACATTTAAATTATTTGTGA-TTAATT-TCTACTCA
*
51312683 ATGTTCAAATA
64 ATGTCCAAATA
* * *
51312694 TATTTTTTAATAATTTTAAAATTTATTGTTATATTTTAATTATTTGTGATTAATTTCTACTCAAT
1 TATTTTTTAATAATTTTAAAATTTATTATTACATTTAAATTATTTGTGATTAATTTCTACTCAAT
51312759 GTCCAAATA
66 GTCCAAATA
51312768 AATTCATTTA
Statistics
Matches: 64, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
73 1 0.02
74 21 0.33
75 42 0.66
ACGTcount: A:0.32, C:0.05, G:0.05, T:0.57
Consensus pattern (74 bp):
TATTTTTTAATAATTTTAAAATTTATTATTACATTTAAATTATTTGTGATTAATTTCTACTCAAT
GTCCAAATA
Found at i:51318102 original size:27 final size:27
Alignment explanation
Indices: 51318072--51318211 Score: 131
Period size: 27 Copynumber: 5.1 Consensus size: 27
51318062 AAATGTCCTT
* * * *
51318072 GATTTGTAGAATTGCCGCTTTACCTTC
1 GATTTATAGAATTACCGTTTTACCCTC
*
51318099 GATTTATAGAATTACCATTTTACCCTC
1 GATTTATAGAATTACCGTTTTACCCTC
*
51318126 GATTTACAGAATTACCGTTTTACCCTC
1 GATTTATAGAATTACCGTTTTACCCTC
* * * *
51318153 GATTTACAAAATTACCATTTTACCTTC
1 GATTTATAGAATTACCGTTTTACCCTC
* *
51318180 -AGTTTACA-AAGTTATTCGTTTTACCCTC
1 GA-TTTATAGAA-TTA-CCGTTTTACCCTC
51318208 GATT
1 GATT
51318212 GTGAAATTAC
Statistics
Matches: 96, Mismatches: 13, Indels: 7
0.83 0.11 0.06
Matches are distributed among these distances:
26 3 0.03
27 80 0.83
28 12 0.12
29 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.11, T:0.41
Consensus pattern (27 bp):
GATTTATAGAATTACCGTTTTACCCTC
Found at i:51318221 original size:54 final size:53
Alignment explanation
Indices: 51318079--51318211 Score: 153
Period size: 54 Copynumber: 2.5 Consensus size: 53
51318069 CTTGATTTGT
* * * *
51318079 AGAATTGCCGCTTTACCTTCGATTTATAGAATTACCATTTTACCCTCGATTTAC
1 AGAATTACCGTTTTACCCTCGATTTA-AAAATTACCATTTTACCCTCGATTTAC
*
51318133 AGAATTACCGTTTTACCCTCGATTTACAAAATTACCATTTTACCTTC-AGTTTAC
1 AGAATTACCGTTTTACCCTCGATTTA-AAAATTACCATTTTACCCTCGA-TTTAC
*
51318187 A-AAGTTATTCGTTTTACCCTCGATT
1 AGAA-TTA-CCGTTTTACCCTCGATT
51318212 GTGAAATTAC
Statistics
Matches: 69, Mismatches: 7, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
53 3 0.04
54 50 0.72
55 16 0.23
ACGTcount: A:0.27, C:0.23, G:0.10, T:0.40
Consensus pattern (53 bp):
AGAATTACCGTTTTACCCTCGATTTAAAAATTACCATTTTACCCTCGATTTAC
Found at i:51318273 original size:27 final size:27
Alignment explanation
Indices: 51318243--51318393 Score: 182
Period size: 27 Copynumber: 5.6 Consensus size: 27
51318233 TGTAGGATAG
51318243 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
51318270 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
* * * *
51318297 AATTACCGAAATACCACTGGTTTGTGA
1 AATTACCAAAATACCCCTAGTTTGTAA
* *
51318324 AATTACCGAAATA-CCCTCAATTTGTAA
1 AATTACCAAAATACCCCT-AGTTTGTAA
**
51318351 AATTACCAAAATACCCCT-GATTTACAA
1 AATTACCAAAATACCCCTAG-TTTGTAA
51318378 AATTA-CAGAAATACCC
1 AATTACCA-AAATACCC
51318394 TTGACTTTCT
Statistics
Matches: 108, Mismatches: 12, Indels: 8
0.84 0.09 0.06
Matches are distributed among these distances:
26 5 0.05
27 99 0.92
28 4 0.04
ACGTcount: A:0.41, C:0.23, G:0.09, T:0.28
Consensus pattern (27 bp):
AATTACCAAAATACCCCTAGTTTGTAA
Found at i:51318273 original size:54 final size:52
Alignment explanation
Indices: 51318210--51318393 Score: 188
Period size: 54 Copynumber: 3.4 Consensus size: 52
51318200 TTACCCTCGA
* * ** *
51318210 TTGTGAAATTACTGAAATACCCCTGTAGGATAGAATTACCAAAATACCCCTAGT
1 TTGTAAAATTACCGAAATACCCCTGTTTG-TAAAATTACCAAAATACCCCT-GT
* * *
51318264 TTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCGAAATACCACTGGT
1 TTGTAAAATTACCGAAATACCCCT-GTTTGTAAAATTACCAAAATACCCCT-GT
* **
51318318 TTGTGAAATTACCGAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTGAT
1 TTGTAAAATTACCGAAATACCC-CTGTTTGTAAAATTACCAAAATACCCCTG-T
** *
51318372 TTACAAAATTACAGAAATACCC
1 TTGTAAAATTACCGAAATACCC
51318394 TTGACTTTCT
Statistics
Matches: 108, Mismatches: 19, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
53 1 0.01
54 103 0.95
55 4 0.04
ACGTcount: A:0.40, C:0.21, G:0.11, T:0.28
Consensus pattern (52 bp):
TTGTAAAATTACCGAAATACCCCTGTTTGTAAAATTACCAAAATACCCCTGT
Found at i:51318300 original size:81 final size:81
Alignment explanation
Indices: 51318210--51318393 Score: 214
Period size: 81 Copynumber: 2.3 Consensus size: 81
51318200 TTACCCTCGA
* * *
51318210 TTGTGAAATTACTGAAATACCCCT-GTAGGAT-AGAATTACCAAAATACCC-CTAGTTTGTAAAA
1 TTGTAAAATTACAGAAATACCCCTGGTAGG-TGA-AATTACCAAAATACCCTC-AATTTGTAAAA
51318272 TTACCAAAATACCCCT-AGT
63 TTACCAAAATACCCCTGA-T
* * ** *
51318291 TTGTAAAATTACCGAAATACCACTGGTTTGTGAAATTACCGAAATACCCTCAATTTGTAAAATTA
1 TTGTAAAATTACAGAAATACCCCTGGTAGGTGAAATTACCAAAATACCCTCAATTTGTAAAATTA
51318356 CCAAAATACCCCTGAT
66 CCAAAATACCCCTGAT
**
51318372 TTACAAAATTACAGAAATACCC
1 TTGTAAAATTACAGAAATACCC
51318394 TTGACTTTCT
Statistics
Matches: 88, Mismatches: 11, Indels: 8
0.82 0.10 0.07
Matches are distributed among these distances:
81 82 0.93
82 6 0.07
ACGTcount: A:0.40, C:0.21, G:0.11, T:0.28
Consensus pattern (81 bp):
TTGTAAAATTACAGAAATACCCCTGGTAGGTGAAATTACCAAAATACCCTCAATTTGTAAAATTA
CCAAAATACCCCTGAT
Found at i:51318466 original size:27 final size:27
Alignment explanation
Indices: 51318371--51318456 Score: 86
Period size: 27 Copynumber: 3.1 Consensus size: 27
51318361 ATACCCCTGA
* * *
51318371 TTTACAAAATTACAGAAATACCCTTGAC
1 TTTACAAAATTACTGAAATACCATTG-G
*
51318399 TTT-CTAAAAACTA-TAGAAATACCATTGG
1 TTTAC--AAAATTACT-GAAATACCATTGG
51318427 TTTACAAAATTACTGAAATACCATTGG
1 TTTACAAAATTACTGAAATACCATTGG
51318454 TTT
1 TTT
51318457 GTAGATTTAC
Statistics
Matches: 48, Mismatches: 5, Indels: 11
0.75 0.08 0.17
Matches are distributed among these distances:
27 23 0.48
28 7 0.15
29 18 0.38
ACGTcount: A:0.41, C:0.16, G:0.09, T:0.34
Consensus pattern (27 bp):
TTTACAAAATTACTGAAATACCATTGG
Found at i:51318540 original size:27 final size:27
Alignment explanation
Indices: 51318510--51318570 Score: 70
Period size: 27 Copynumber: 2.3 Consensus size: 27
51318500 ACCCTTAATA
51318510 GGTAAAAAGACCGTAA-AGCCCCTGTAG
1 GGTAAAAAGACCGTAATA-CCCCTGTAG
** * *
51318537 GGTAAAGTGACCGTAATACCCTTGTAT
1 GGTAAAAAGACCGTAATACCCCTGTAG
51318564 GGTAAAA
1 GGTAAAA
51318571 TAACGAATAT
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
27 27 0.96
28 1 0.04
ACGTcount: A:0.36, C:0.18, G:0.25, T:0.21
Consensus pattern (27 bp):
GGTAAAAAGACCGTAATACCCCTGTAG
Found at i:51319439 original size:25 final size:25
Alignment explanation
Indices: 51319384--51319453 Score: 88
Period size: 25 Copynumber: 2.8 Consensus size: 25
51319374 AGGAAGTACT
*
51319384 AAAAGGGCTCTGCCCCAGTTTACCG
1 AAAAGGGCTCTGCCCCAGTTTACAG
*
51319409 AAAAGGGCTTTGCCCCAGTTTATCAG
1 AAAAGGGCTCTGCCCCAGTTTA-CAG
* *
51319435 -GAAGGGCTCTGCCCTAGTT
1 AAAAGGGCTCTGCCCCAGTT
51319454 ATTAAAAGAG
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
25 37 0.95
26 2 0.05
ACGTcount: A:0.23, C:0.27, G:0.26, T:0.24
Consensus pattern (25 bp):
AAAAGGGCTCTGCCCCAGTTTACAG
Found at i:51320630 original size:68 final size:68
Alignment explanation
Indices: 51320521--51320652 Score: 248
Period size: 68 Copynumber: 1.9 Consensus size: 68
51320511 CACATATACA
51320521 TTACCATACCAATGCCATATCTCAGATATGGTCTTACATGGATCTCATATCGATGCCAATAGCCT
1 TTACCATACCAATGCCATATCTCAGATATGGTCTTACATGGATCTCATATCGATGCCAATAGCCT
51320586 ACG
66 ACG
51320589 TTACCATACCAATGCCATATC-CTAGATATGGTCTTACATGGATCTCATATCGATGCCAATAGCC
1 TTACCATACCAATGCCATATCTC-AGATATGGTCTTACATGGATCTCATATCGATGCCAATAGCC
51320653 CAGCTATGGT
Statistics
Matches: 63, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
67 1 0.02
68 62 0.98
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (68 bp):
TTACCATACCAATGCCATATCTCAGATATGGTCTTACATGGATCTCATATCGATGCCAATAGCCT
ACG
Found at i:51320662 original size:42 final size:42
Alignment explanation
Indices: 51320600--51320720 Score: 129
Period size: 42 Copynumber: 2.9 Consensus size: 42
51320590 TACCATACCA
* * * * *
51320600 ATGCCATATCCTAGATATGGTCTTACATGGA-TCTCATATCG
1 ATGCCATAGCCCAGATATGGTCTTACACGAAGTCTCACATCG
* * *
51320641 ATGCCAATAGCCCAGCTATGGTCTTATACGAAGTCTCACATTG
1 ATGCC-ATAGCCCAGATATGGTCTTACACGAAGTCTCACATCG
*
51320684 ATGCCATATCCCAGATATGGTCTTACACGTAA-TCTCA
1 ATGCCATAGCCCAGATATGGTCTTACACG-AAGTCTCA
51320721 AATAACCCTA
Statistics
Matches: 66, Mismatches: 11, Indels: 5
0.80 0.13 0.06
Matches are distributed among these distances:
41 5 0.08
42 46 0.70
43 15 0.23
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.31
Consensus pattern (42 bp):
ATGCCATAGCCCAGATATGGTCTTACACGAAGTCTCACATCG
Found at i:51327118 original size:27 final size:27
Alignment explanation
Indices: 51326989--51327319 Score: 225
Period size: 27 Copynumber: 12.3 Consensus size: 27
51326979 TACCCTATAG
* * * *
51326989 GGGTATGTCAGTCATTTTAC-ACTACAA
1 GGGTATTTCAGTAATTTTACAAAT-CGA
* * *
51327016 GGGTATTTCAATAATTTTAC-ACTACAA
1 GGGTATTTCAGTAATTTTACAAAT-CGA
*
51327043 GGGTATTTCAATAATTTTACAAATCGA
1 GGGTATTTCAGTAATTTTACAAATCGA
51327070 GGGTATTTCTA-TAATTTTACAAATCGA
1 GGGTATTTC-AGTAATTTTACAAATCGA
*
51327097 GGGTATTTCAGTAATTTTACAAATTGA
1 GGGTATTTCAGTAATTTTACAAATCGA
** * *
51327124 GGGTGGTTCGGTAATTTTACAAATTGA
1 GGGTATTTCAGTAATTTTACAAATCGA
* *
51327151 GGGTATTTTAGTAATTTTAC-AATTGA
1 GGGTATTTCAGTAATTTTACAAATCGA
* * * * *
51327177 CGGTATTT-TGATAACTTTAGAAATTGA
1 GGGTATTTCAG-TAATTTTACAAATCGA
* *
51327204 GGGTATTTTAGTAATTTTACAAAAT-AA
1 GGGTATTTCAGTAATTTTAC-AAATCGA
* * * *
51327231 GGATATTTC-GATAATTTCAC-AAGCCA
1 GGGTATTTCAG-TAATTTTACAAATCGA
* *
51327257 GGGGTATTTCGGTAATTTTTCAAATC-A
1 -GGGTATTTCAGTAATTTTACAAATCGA
* * *
51327284 GGGGTACTTT-GGTAATTCTACAAACCG-
1 -GGGTA-TTTCAGTAATTTTACAAATCGA
51327311 GGGTATTTC
1 GGGTATTTC
51327320 GGTACAAATC
Statistics
Matches: 255, Mismatches: 34, Indels: 31
0.80 0.11 0.10
Matches are distributed among these distances:
25 6 0.02
26 28 0.11
27 206 0.81
28 15 0.06
ACGTcount: A:0.32, C:0.11, G:0.19, T:0.38
Consensus pattern (27 bp):
GGGTATTTCAGTAATTTTACAAATCGA
Found at i:51327126 original size:54 final size:54
Alignment explanation
Indices: 51327015--51327319 Score: 271
Period size: 54 Copynumber: 5.7 Consensus size: 54
51327005 TTACACTACA
* * * * *
51327015 AGGGTATTTCAATAATTTTAC-ACTACAAGGGTATTTCAATAATTTTACAAATCG
1 AGGGTATTTCGATAATTTTACAAAT-CGAGGGTATTTCAGTAATTTTACAAATTG
*
51327069 AGGGTATTTCTATAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAATTG
1 AGGGTATTTCGATAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAATTG
** * * *
51327123 AGGGTGGTTCGGTAATTTTACAAATTGAGGGTATTTTAGTAATTTTAC-AATTG
1 AGGGTATTTCGATAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAATTG
* * * * * * * *
51327176 ACGGTATTTTGATAACTTTAGAAATTGAGGGTATTTTAGTAATTTTACAAAATA
1 AGGGTATTTCGATAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAATTG
* * * * * * *
51327230 AGGATATTTCGATAATTTCAC-AAGCCAGGGGTATTTCGGTAATTTTTCAAA-TC
1 AGGGTATTTCGATAATTTTACAAATCGA-GGGTATTTCAGTAATTTTACAAATTG
* * *
51327283 AGGGGTACTTT-GGTAATTCTACAAACCG-GGGTATTTC
1 A-GGGTA-TTTCGATAATTTTACAAATCGAGGGTATTTC
51327320 GGTACAAATC
Statistics
Matches: 206, Mismatches: 39, Indels: 13
0.80 0.15 0.05
Matches are distributed among these distances:
53 60 0.29
54 138 0.67
55 8 0.04
ACGTcount: A:0.32, C:0.10, G:0.19, T:0.38
Consensus pattern (54 bp):
AGGGTATTTCGATAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAATTG
Found at i:51327246 original size:80 final size:80
Alignment explanation
Indices: 51327042--51327252 Score: 230
Period size: 80 Copynumber: 2.6 Consensus size: 80
51327032 TTACACTACA
* *
51327042 AGGGTATTTCAATAATTTTAC-AAATCGAGGGTATTTCTATAATTTTACAAATCGAGGGTATTTC
1 AGGGTATTTCAGTAATTTTACAAAAT-GAGGGTATTTCTATAATTTTAC-AATCGACGGTATTTC
*
51327106 AGTAATTTTACAAATTG
64 AGTAACTTTACAAATTG
** * * * *
51327123 AGGGTGGTTCGGTAATTTTACAAATTGAGGGTATTT-TAGTAATTTTACAATTGACGGTATTT-T
1 AGGGTATTTCAGTAATTTTACAAAATGAGGGTATTTCTA-TAATTTTACAATCGACGGTATTTCA
*
51327186 GATAACTTTAGAAATTG
65 G-TAACTTTACAAATTG
* * * * *
51327203 AGGGTATTTTAGTAATTTTACAAAATAAGGATATTTCGATAATTTCACAA
1 AGGGTATTTCAGTAATTTTACAAAATGAGGGTATTTCTATAATTTTACAA
51327253 GCCAGGGGTA
Statistics
Matches: 107, Mismatches: 19, Indels: 9
0.79 0.14 0.07
Matches are distributed among these distances:
79 1 0.01
80 66 0.62
81 37 0.35
82 3 0.03
ACGTcount: A:0.34, C:0.08, G:0.18, T:0.40
Consensus pattern (80 bp):
AGGGTATTTCAGTAATTTTACAAAATGAGGGTATTTCTATAATTTTACAATCGACGGTATTTCAG
TAACTTTACAAATTG
Found at i:51327262 original size:107 final size:108
Alignment explanation
Indices: 51326989--51327282 Score: 263
Period size: 107 Copynumber: 2.7 Consensus size: 108
51326979 TACCCTATAG
* * ** * * * * * *
51326989 GGGTATGTCAGTCATTTTACACTACAAGGGTATTTCAATAATTTTACACTACA-AGGGTATTTCA
1 GGGTATTTCAGTAATTTTACAAAATAAGGATAGTTCGATAATTTCACA-AACAGAGGGTATTTCA
* * *
51327053 ATAATTTTACAAATCGAGGGTATTTCTATAATTTTACAAATCGA
65 GTAATTTTACAAATCGACGGTATTTCTATAACTTTACAAATCGA
* * * * * * ** *
51327097 GGGTATTTCAGTAATTTTACAAATTGAGGGTGGTTCGGTAATTTTACAAATTGAGGGTATTTTAG
1 GGGTATTTCAGTAATTTTACAAAATAAGGATAGTTCGATAATTTCACAAACAGAGGGTATTTCAG
* * *
51327162 TAATTTTAC-AATTGACGGTATTT-TGATAACTTTAGAAATTGA
66 TAATTTTACAAATCGACGGTATTTCT-ATAACTTTACAAATCGA
* * * *
51327204 GGGTATTTTAGTAATTTTACAAAATAAGGATATTTCGATAATTTCACAAGCCAG-GGGTATTTCG
1 GGGTATTTCAGTAATTTTACAAAATAAGGATAGTTCGATAATTTCACAA-ACAGAGGGTATTTCA
*
51327268 GTAATTTTTCAAATC
65 GTAATTTTACAAATC
51327283 AGGGGTACTT
Statistics
Matches: 146, Mismatches: 36, Indels: 8
0.77 0.19 0.04
Matches are distributed among these distances:
106 1 0.01
107 85 0.58
108 60 0.41
ACGTcount: A:0.33, C:0.11, G:0.18, T:0.39
Consensus pattern (108 bp):
GGGTATTTCAGTAATTTTACAAAATAAGGATAGTTCGATAATTTCACAAACAGAGGGTATTTCAG
TAATTTTACAAATCGACGGTATTTCTATAACTTTACAAATCGA
Found at i:51327327 original size:20 final size:21
Alignment explanation
Indices: 51327302--51327344 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
51327292 TTGGTAATTC
51327302 TACAAACCG-GGGTATTTCGG
1 TACAAACCGAGGGTATTTCGG
* *
51327322 TACAAATCGAGGGTATTTTGG
1 TACAAACCGAGGGTATTTCGG
51327343 TA
1 TA
51327345 ATTTCTCTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 8 0.40
21 12 0.60
ACGTcount: A:0.28, C:0.14, G:0.28, T:0.30
Consensus pattern (21 bp):
TACAAACCGAGGGTATTTCGG
Found at i:51333918 original size:27 final size:27
Alignment explanation
Indices: 51333875--51333968 Score: 107
Period size: 27 Copynumber: 3.5 Consensus size: 27
51333865 AAGGGCAAAA
* *
51333875 CAGTCATTTTACCCTACAGGGGTATGT
1 CAGTCATTTTACACTACAAGGGTATGT
* *
51333902 CGGTCATTTTACACTACAAGGGTATTT
1 CAGTCATTTTACACTACAAGGGTATGT
* * *
51333929 CAATAATTTTACACTACAAGGGTATTT
1 CAGTCATTTTACACTACAAGGGTATGT
* *
51333956 CAATAATTTTACA
1 CAGTCATTTTACA
51333969 AATCGAGGGT
Statistics
Matches: 60, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 60 1.00
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.36
Consensus pattern (27 bp):
CAGTCATTTTACACTACAAGGGTATGT
Found at i:51333938 original size:54 final size:54
Alignment explanation
Indices: 51333880--51334156 Score: 161
Period size: 54 Copynumber: 5.1 Consensus size: 54
51333870 CAAAACAGTC
* * ** * *
51333880 ATTTTACCCTACAGGGGTATGTCGGTCATTTTAC-ACTACAAGGGTATTTCAATA
1 ATTTTACACTACAAGGGTATGTCAATAATTTTACAAAT-CAAGGGTATTTCAATA
* * *
51333934 ATTTTACACTACAAGGGTATTTCAATAATTTTACAAATCGAGGGTATTTCTATA
1 ATTTTACACTACAAGGGTATGTCAATAATTTTACAAATCAAGGGTATTTCAATA
* * * * ** ** **
51333988 ATTTTACA-AATCGAGGGTATTTCAGTAATTTTACAAATTGAGGGTGGTTCGGTA
1 ATTTTACACTA-CAAGGGTATGTCAATAATTTTACAAATCAAGGGTATTTCAATA
* ** * * * * **
51334042 ATTTTACA-AATTGAGGGTATTTCAGTAATTTTACAATTGATA--GTATTTCGGTA
1 ATTTTACACTA-CAAGGGTATGTCAATAATTTTACAAATCA-AGGGTATTTCAATA
* * * * **
51334095 ATTTTACGAAT-CAAGGGTATTTCAATAATTTTGCAAATCGAGGGTATTTCACGA
1 ATTTTAC-ACTACAAGGGTATGTCAATAATTTTACAAATCAAGGGTATTTCAATA
51334149 ATTTTACA
1 ATTTTACA
51334157 AATCAATGAT
Statistics
Matches: 182, Mismatches: 34, Indels: 15
0.79 0.15 0.06
Matches are distributed among these distances:
52 1 0.01
53 40 0.22
54 138 0.76
55 3 0.02
ACGTcount: A:0.32, C:0.12, G:0.18, T:0.38
Consensus pattern (54 bp):
ATTTTACACTACAAGGGTATGTCAATAATTTTACAAATCAAGGGTATTTCAATA
Found at i:51333977 original size:27 final size:27
Alignment explanation
Indices: 51333920--51334224 Score: 323
Period size: 27 Copynumber: 11.4 Consensus size: 27
51333910 TTACACTACA
* * *
51333920 AGGGTATTTCAATAATTTTAC-ACTACA
1 AGGGTATTTCAGTAATTTTACAAAT-CG
*
51333947 AGGGTATTTCAATAATTTTACAAATCG
1 AGGGTATTTCAGTAATTTTACAAATCG
51333974 AGGGTATTTCTA-TAATTTTACAAATCG
1 AGGGTATTTC-AGTAATTTTACAAATCG
*
51334001 AGGGTATTTCAGTAATTTTACAAATTG
1 AGGGTATTTCAGTAATTTTACAAATCG
** * *
51334028 AGGGTGGTTCGGTAATTTTACAAATTG
1 AGGGTATTTCAGTAATTTTACAAATCG
*
51334055 AGGGTATTTCAGTAATTTTAC-AATTG
1 AGGGTATTTCAGTAATTTTACAAATCG
** * * *
51334081 ATAGTATTTCGGTAATTTTACGAATCA
1 AGGGTATTTCAGTAATTTTACAAATCG
* *
51334108 AGGGTATTTCAATAATTTTGCAAATCG
1 AGGGTATTTCAGTAATTTTACAAATCG
*
51334135 AGGGTATTTCACG-AATTTTACAAATCA
1 AGGGTATTTCA-GTAATTTTACAAATCG
* * * *
51334162 ATGATATTTCGGTAATTTTTCAAATCG
1 AGGGTATTTCAGTAATTTTACAAATCG
* * *
51334189 GGGGTA-CTCGGTAATTTTACAAATCG
1 AGGGTATTTCAGTAATTTTACAAATCG
51334215 AGGGTATTTC
1 AGGGTATTTC
51334225 GGTACAAACC
Statistics
Matches: 235, Mismatches: 36, Indels: 14
0.82 0.13 0.05
Matches are distributed among these distances:
26 48 0.20
27 184 0.78
28 3 0.01
ACGTcount: A:0.32, C:0.11, G:0.18, T:0.38
Consensus pattern (27 bp):
AGGGTATTTCAGTAATTTTACAAATCG
Found at i:51334005 original size:81 final size:80
Alignment explanation
Indices: 51333920--51334224 Score: 285
Period size: 80 Copynumber: 3.8 Consensus size: 80
51333910 TTACACTACA
*
51333920 AGGGTATTTCAATAATTTTACACTACAAGGGTATTTCAATAATTTTACAAATCGAGGGTATTTCT
1 AGGGTATTTCAGTAATTTTACA-TACAAGGGTATTTCAATAATTTTACAAATCGAGGGTATTTC-
51333985 A-TAATTTTACAAATCG
64 ACTAATTTTACAAATCG
* ** ** ** *
51334001 AGGGTATTTCAGTAATTTTACAAATTGAGGGTGGTTCGGTAATTTTACAAATTGAGGGTATTTCA
1 AGGGTATTTCAGTAATTTTACATA-CAAGGGTATTTCAATAATTTTACAAATCGAGGGTATTTCA
* *
51334066 GTAATTTTAC-AATTG
65 CTAATTTTACAAATCG
** * *
51334081 ATAGTATTTCGGTAATTTTACGA-ATCAAGGGTATTTCAATAATTTTGCAAATCGAGGGTATTTC
1 AGGGTATTTCAGTAATTTTAC-ATA-CAAGGGTATTTCAATAATTTTACAAATCGAGGGTATTTC
* *
51334145 ACGAATTTTACAAATCA
64 ACTAATTTTACAAATCG
* * * * * ** * **
51334162 ATGATATTTCGGTAATTTTTCAAATCGGGGGTA-CTCGGTAATTTTACAAATCGAGGGTATTTC
1 AGGGTATTTCAGTAATTTTACATA-CAAGGGTATTTCAATAATTTTACAAATCGAGGGTATTTC
51334225 GGTACAAACC
Statistics
Matches: 185, Mismatches: 34, Indels: 11
0.80 0.15 0.05
Matches are distributed among these distances:
80 93 0.50
81 92 0.50
ACGTcount: A:0.32, C:0.11, G:0.18, T:0.38
Consensus pattern (80 bp):
AGGGTATTTCAGTAATTTTACATACAAGGGTATTTCAATAATTTTACAAATCGAGGGTATTTCAC
TAATTTTACAAATCG
Found at i:51334170 original size:107 final size:108
Alignment explanation
Indices: 51333920--51334224 Score: 339
Period size: 107 Copynumber: 2.8 Consensus size: 108
51333910 TTACACTACA
* * *
51333920 AGGGTATTTCAATAATTTTAC-ACTACAAGGGTATTTCAATAATTTTACAAATCGAGGGTATTTC
1 AGGGTATTTCAAGAATTTTACAAAT-CAAGGGTATTTCAGTAATTTTACAAATCGAGGGTATTTC
** * *
51333984 TATAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAATTG
65 GGTAATTTTACAAATCGAGGGTATTTCAATAATTTTACAAATCG
** * ** * **
51334028 AGGGTGGTTC-GGTAATTTTACAAATTGAGGGTATTTCAGTAATTTTAC-AATTGATAGTATTTC
1 AGGGTATTTCAAG-AATTTTACAAATCAAGGGTATTTCAGTAATTTTACAAATCGAGGGTATTTC
* * *
51334091 GGTAATTTTACGAATCAAGGGTATTTCAATAATTTTGCAAATCG
65 GGTAATTTTACAAATCGAGGGTATTTCAATAATTTTACAAATCG
* * * * * * *
51334135 AGGGTATTTCACGAATTTTACAAATCAATGATATTTCGGTAATTTTTCAAATCGGGGGTA-CTCG
1 AGGGTATTTCAAGAATTTTACAAATCAAGGGTATTTCAGTAATTTTACAAATCGAGGGTATTTCG
51334199 GTAATTTTACAAATCGAGGGTATTTC
66 GTAATTTTACAAATCGAGGGTATTTC
51334225 GGTACAAACC
Statistics
Matches: 159, Mismatches: 34, Indels: 9
0.79 0.17 0.04
Matches are distributed among these distances:
107 113 0.71
108 44 0.28
109 2 0.01
ACGTcount: A:0.32, C:0.11, G:0.18, T:0.38
Consensus pattern (108 bp):
AGGGTATTTCAAGAATTTTACAAATCAAGGGTATTTCAGTAATTTTACAAATCGAGGGTATTTCG
GTAATTTTACAAATCGAGGGTATTTCAATAATTTTACAAATCG
Found at i:51334602 original size:28 final size:28
Alignment explanation
Indices: 51334568--51334659 Score: 112
Period size: 28 Copynumber: 3.3 Consensus size: 28
51334558 TGGCCCGTTT
* *
51334568 AGGCCCAATCTCTTTCATATGGCCCATC
1 AGGCCCAATCACATTCATATGGCCCATC
* * * *
51334596 GGGCCCAATCACATTCATATGTCGCATT
1 AGGCCCAATCACATTCATATGGCCCATC
* *
51334624 AGGCCCGATCACATTCATATGGACCATC
1 AGGCCCAATCACATTCATATGGCCCATC
51334652 AGGCCCAA
1 AGGCCCAA
51334660 CTACTTCCCA
Statistics
Matches: 51, Mismatches: 13, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
28 51 1.00
ACGTcount: A:0.26, C:0.33, G:0.17, T:0.24
Consensus pattern (28 bp):
AGGCCCAATCACATTCATATGGCCCATC
Found at i:51344716 original size:47 final size:47
Alignment explanation
Indices: 51344665--51344908 Score: 326
Period size: 47 Copynumber: 5.1 Consensus size: 47
51344655 TTAGGATTTT
*
51344665 ATGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
51344712 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
* *** *
51344759 CTGTGATGAATGTGAACCTGTATATATATATGCGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAA-C-----ATGCGTATGTGTGATAAGGCCGAATGGCCA
51344812 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
** ** * *
51344859 ATGTGATGAATGTGAACATGAATACATGTGGTAAGGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
51344906 ATG
1 ATG
51344909 CGAAACGTGT
Statistics
Matches: 174, Mismatches: 17, Indels: 12
0.86 0.08 0.06
Matches are distributed among these distances:
47 131 0.75
48 1 0.01
52 1 0.01
53 41 0.24
ACGTcount: A:0.30, C:0.13, G:0.31, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
Found at i:51344811 original size:100 final size:100
Alignment explanation
Indices: 51344687--51344875 Score: 360
Period size: 100 Copynumber: 1.9 Consensus size: 100
51344677 TGAACATGCG
*
51344687 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGA
1 TATGCGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGA
*
51344752 ATGGCCACTGTGATGAATGTGAACCTGTATATATA
66 ATGGCCAATGTGATGAATGTGAACCTGTATATATA
51344787 TATGCGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGA
1 TATGCGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGA
51344852 ATGGCCAATGTGATGAATGTGAAC
66 ATGGCCAATGTGATGAATGTGAAC
51344876 ATGAATACAT
Statistics
Matches: 87, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
100 87 1.00
ACGTcount: A:0.30, C:0.13, G:0.30, T:0.26
Consensus pattern (100 bp):
TATGCGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGA
ATGGCCAATGTGATGAATGTGAACCTGTATATATA
Found at i:51344971 original size:46 final size:46
Alignment explanation
Indices: 51344884--51344972 Score: 115
Period size: 46 Copynumber: 1.9 Consensus size: 46
51344874 ACATGAATAC
* * * *
51344884 ATGTGGTAAGGCCGAATGGCTAATGCGAAACGTGTATGAGATGGAT
1 ATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTACGAGATGGAT
* * *
51344930 ATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTACGAGATG
1 ATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTACGAGATG
51344973 TGTATATATA
Statistics
Matches: 36, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
46 36 1.00
ACGTcount: A:0.33, C:0.10, G:0.33, T:0.25
Consensus pattern (46 bp):
ATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTACGAGATGGAT
Found at i:51345338 original size:37 final size:37
Alignment explanation
Indices: 51345119--51345337 Score: 384
Period size: 37 Copynumber: 5.9 Consensus size: 37
51345109 GGAAATATAT
51345119 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
51345156 TCCGAGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
51345193 TCTGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
51345230 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
51345267 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* * *
51345304 TCCGGGTAAGACCCGATAACTTCATGTGGAGATT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATT
51345338 TCGTCTGAGC
Statistics
Matches: 174, Mismatches: 8, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 174 1.00
ACGTcount: A:0.25, C:0.19, G:0.31, T:0.26
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:51346794 original size:46 final size:46
Alignment explanation
Indices: 51346727--51346901 Score: 194
Period size: 46 Copynumber: 3.8 Consensus size: 46
51346717 TGTAACCCGC
* *
51346727 CCATAAGTGAACTCGGACTCAAATCAATGAGCTCAGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCAGGCGTTCGCAT
*
51346773 CCATAAGTGAACTCGGACTCAACTCAACGAGCTC-GG-GTGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCAGGCGTTCGC-A--T
* *** * * *
51346819 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCAGGCGTTCGCAT
*
51346866 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCAG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCAG
51346902 ATGCCCAAAT
Statistics
Matches: 107, Mismatches: 15, Indels: 14
0.79 0.11 0.10
Matches are distributed among these distances:
43 1 0.01
44 4 0.04
45 2 0.02
46 65 0.61
47 30 0.28
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCAGGCGTTCGCAT
Found at i:51351895 original size:39 final size:39
Alignment explanation
Indices: 51351852--51352016 Score: 285
Period size: 39 Copynumber: 4.2 Consensus size: 39
51351842 TCTTTAACCT
** *
51351852 GGATATTTTTCCAGCACGTAGCCTGCGGACCTCAAGTCC
1 GGATATTTTTCCAGCATATAGCCTGCGGACCTCATGTCC
* *
51351891 GGATATATTTCTAGCATATAGCCTGCGGACCTCATGTCC
1 GGATATTTTTCCAGCATATAGCCTGCGGACCTCATGTCC
51351930 GGATATTTTTCCAGCATATAGCCTGCGGACCTCATGTCC
1 GGATATTTTTCCAGCATATAGCCTGCGGACCTCATGTCC
51351969 GGATATTTTTCCAGCATATAGCCTGCGGACCTCATGTCC
1 GGATATTTTTCCAGCATATAGCCTGCGGACCTCATGTCC
51352008 GGATATTTT
1 GGATATTTT
51352017 CAATCTCATA
Statistics
Matches: 119, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 119 1.00
ACGTcount: A:0.21, C:0.27, G:0.21, T:0.31
Consensus pattern (39 bp):
GGATATTTTTCCAGCATATAGCCTGCGGACCTCATGTCC
Found at i:51353850 original size:40 final size:40
Alignment explanation
Indices: 51353799--51353977 Score: 263
Period size: 40 Copynumber: 4.5 Consensus size: 40
51353789 TGGATGATAA
*
51353799 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
51353839 CCGGGCTAAGTCCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGT-CCCGAAGGCATTTGTGCGAGTTACTATAT
*
51353880 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
51353920 CCGGGCTATGTCCCGAAGGCATTCGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
51353960 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
51353978 TACTTGGCTT
Statistics
Matches: 129, Mismatches: 8, Indels: 5
0.91 0.06 0.04
Matches are distributed among these distances:
39 15 0.12
40 75 0.58
41 39 0.30
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:51364208 original size:132 final size:132
Alignment explanation
Indices: 51363971--51364233 Score: 429
Period size: 132 Copynumber: 2.0 Consensus size: 132
51363961 GTGCCCAGCC
** * *
51363971 CGTAGGCTAACATCCTCTTAGAACATACCAAGTGTTGGAATTCAGTAGAATCAGTGGATAGTAAC
1 CGTAGGCTAACATCCTCCGAGAACACACCAAGTGTTGGAATCCAGTAGAATCAGTGGATAGTAAC
51364036 AAGTCAGGAATCATCATCTCATCATAAGTCAATCCCATACAACGTGCAATATAACCTATTGGCAT
66 AAGTCAGGAATCATCATCTCATCATAAGTCAATCCCATACAACGTGCAATATAACCTATTGGCAT
51364101 GT
131 GT
* * * *
51364103 CGTAGGCTAACATCCTCCCGA-AACACACCAAGTGTTGGACTCCGGTATAATCAGTGGATAGTAC
1 CGTAGGCTAACATCCT-CCGAGAACACACCAAGTGTTGGAATCCAGTAGAATCAGTGGATAGTAA
*
51364167 CAAGTCAGGAATCATCATCTCATCATAAGTCAATCCCATACAGCGTGCAATATAACCTATTGGCA
65 CAAGTCAGGAATCATCATCTCATCATAAGTCAATCCCATACAACGTGCAATATAACCTATTGGCA
51364232 TG
130 TG
51364234 CCAATTGTAT
Statistics
Matches: 121, Mismatches: 9, Indels: 2
0.92 0.07 0.02
Matches are distributed among these distances:
132 119 0.98
133 2 0.02
ACGTcount: A:0.33, C:0.24, G:0.18, T:0.25
Consensus pattern (132 bp):
CGTAGGCTAACATCCTCCGAGAACACACCAAGTGTTGGAATCCAGTAGAATCAGTGGATAGTAAC
AAGTCAGGAATCATCATCTCATCATAAGTCAATCCCATACAACGTGCAATATAACCTATTGGCAT
GT
Found at i:51373044 original size:29 final size:30
Alignment explanation
Indices: 51373001--51373091 Score: 139
Period size: 30 Copynumber: 3.1 Consensus size: 30
51372991 TCTCAGTCAC
*
51373001 GTGCGGCACATGGCCTGGCCACATAG-CGT
1 GTGCGGCACATGGCCTGGCCACACAGCCGT
*
51373030 GTGCGGCACACGGCCTGGCCACACAGCCGT
1 GTGCGGCACATGGCCTGGCCACACAGCCGT
* *
51373060 GTGCGGCGCATGGCCTGGCCACACAGTCGT
1 GTGCGGCACATGGCCTGGCCACACAGCCGT
51373090 GT
1 GT
51373092 AACCCTTGTA
Statistics
Matches: 56, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
29 24 0.43
30 32 0.57
ACGTcount: A:0.15, C:0.34, G:0.35, T:0.15
Consensus pattern (30 bp):
GTGCGGCACATGGCCTGGCCACACAGCCGT
Found at i:51380129 original size:15 final size:15
Alignment explanation
Indices: 51380109--51380139 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
51380099 CTCCTCATAA
*
51380109 TTCATACACATGCAT
1 TTCATACACAAGCAT
51380124 TTCATACACAAGCAT
1 TTCATACACAAGCAT
51380139 T
1 T
51380140 CAATCAATAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.35, C:0.26, G:0.06, T:0.32
Consensus pattern (15 bp):
TTCATACACAAGCAT
Found at i:51384072 original size:47 final size:47
Alignment explanation
Indices: 51384018--51384348 Score: 420
Period size: 47 Copynumber: 7.1 Consensus size: 47
51384008 TTAGGATTTT
** * * *
51384018 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCAA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
51384065 ATGTGATGAATGTGAACCTGTATATATATGCGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATG--CATATAT--GTGATAAGGCCGAATGGCCA
* *
51384116 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* **
51384163 ATGTGATGAATGTGAACATGCGTACGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
** *
51384210 ATGTGATGAA--T---CATGTGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
51384252 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
51384299 ATGTGATGAATGTGAACATGTATATATGTGGTAAGGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
51384346 ATG
1 ATG
51384349 CGAAACCTGT
Statistics
Matches: 256, Mismatches: 19, Indels: 18
0.87 0.06 0.06
Matches are distributed among these distances:
42 39 0.15
44 1 0.00
45 1 0.00
47 167 0.65
49 11 0.04
51 37 0.14
ACGTcount: A:0.32, C:0.11, G:0.30, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:51384167 original size:89 final size:91
Alignment explanation
Indices: 51384090--51384348 Score: 339
Period size: 89 Copynumber: 2.8 Consensus size: 91
51384080 ACCTGTATAT
* *
51384090 ATATGCGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCG
1 ATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTGTATGTGTGATAAGGCCG
51384155 AATGGCCAATGTGATGAATGTGAACATGC
66 AATGGCCAATGTGA-GAATGT-AACAT-C
* *
51384184 GTACGTGTGATAAGGCCGAATGGCCAATGTGATGAA--T---CATGTGTATGTGTGATAAGGCCG
1 ATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTGTATGTGTGATAAGGCCG
51384244 AATGGCCAATGTGATGAATGTGAACATGC
66 AATGGCCAATGTGA-GAATGT-AACAT-C
* * * * *
51384273 ATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTATATATGTGGTAAGGCCG
1 ATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTGTATGTGTGATAAGGCCG
*
51384338 AATGGCTAATG
66 AATGGCCAATG
51384349 CGAAACCTGT
Statistics
Matches: 148, Mismatches: 12, Indels: 10
0.87 0.07 0.06
Matches are distributed among these distances:
89 83 0.56
91 1 0.01
92 1 0.01
94 63 0.43
ACGTcount: A:0.31, C:0.13, G:0.31, T:0.25
Consensus pattern (91 bp):
ATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTGTATGTGTGATAAGGCCG
AATGGCCAATGTGAGAATGTAACATC
Found at i:51384270 original size:136 final size:136
Alignment explanation
Indices: 51384091--51384348 Score: 426
Period size: 136 Copynumber: 1.9 Consensus size: 136
51384081 CCTGTATATA
* * *
51384091 TATGCGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGA
1 TATGCGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGA
* *
51384156 ATGGCCAATGTGATGAATGTGAACATGCGTACGTGTGATAAGGCCGAATGGCCAATGTGATGAAT
66 ATGGCCAATGTGATGAATGTGAACATGCATACATGTGATAAGGCCGAATGGCCAATGTGATGAAT
51384221 CATGTG
131 CATGTG
*
51384227 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGA
1 TATGCGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGA
* * * *
51384292 ATGGCCAATGTGATGAATGTGAACATGTATATATGTGGTAAGGCCGAATGGCTAATG
66 ATGGCCAATGTGATGAATGTGAACATGCATACATGTGATAAGGCCGAATGGCCAATG
51384349 CGAAACCTGT
Statistics
Matches: 112, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
136 112 1.00
ACGTcount: A:0.31, C:0.13, G:0.31, T:0.26
Consensus pattern (136 bp):
TATGCGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGA
ATGGCCAATGTGATGAATGTGAACATGCATACATGTGATAAGGCCGAATGGCCAATGTGATGAAT
CATGTG
Found at i:51384452 original size:46 final size:46
Alignment explanation
Indices: 51384322--51384458 Score: 193
Period size: 46 Copynumber: 3.0 Consensus size: 46
51384312 GAACATGTAT
* * *
51384322 ATATGTGGTAAGGCCGAATGGCTAATGCGAAACCTGTATGAGATAG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAACATGTATGAGATGG
* *
51384368 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAACATGTATGAGATGG
* * * *
51384414 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTATGAGATG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAACATGTATGAGATG
51384459 TGTATATATA
Statistics
Matches: 81, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 81 1.00
ACGTcount: A:0.34, C:0.10, G:0.31, T:0.25
Consensus pattern (46 bp):
ATATGTGGTAAAGCCGAATGGCTAATGCGAAACATGTATGAGATGG
Found at i:51389898 original size:21 final size:20
Alignment explanation
Indices: 51389874--51389912 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
51389864 GGACTAATCT
*
51389874 GAAACAAAACAGAAAAATATG
1 GAAAAAAAAC-GAAAAATATG
*
51389895 GAAAAAAAACTAAAAATA
1 GAAAAAAAACGAAAAATA
51389913 GGGGTCATAC
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 7 0.44
21 9 0.56
ACGTcount: A:0.72, C:0.08, G:0.10, T:0.10
Consensus pattern (20 bp):
GAAAAAAAACGAAAAATATG
Found at i:51396199 original size:28 final size:28
Alignment explanation
Indices: 51396162--51396236 Score: 105
Period size: 28 Copynumber: 2.7 Consensus size: 28
51396152 TGTTCCCTTT
*
51396162 AGGCCCAATCTCATTCATATGGCCCATC
1 AGGCCCAATCACATTCATATGGCCCATC
* * *
51396190 AGGCCTAATCACTTTCATATGGCCTATC
1 AGGCCCAATCACATTCATATGGCCCATC
*
51396218 AGGCCCAATCACACTCATA
1 AGGCCCAATCACATTCATA
51396237 GTCATGCAAT
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 40 1.00
ACGTcount: A:0.28, C:0.33, G:0.13, T:0.25
Consensus pattern (28 bp):
AGGCCCAATCACATTCATATGGCCCATC
Found at i:51401569 original size:29 final size:29
Alignment explanation
Indices: 51401483--51401589 Score: 110
Period size: 29 Copynumber: 3.7 Consensus size: 29
51401473 TACATACATG
51401483 CATATGGCCCACTAGGCCCAA-TCTTATT
1 CATATGGCCCACTAGGCCCAATTCTTATT
* * * *
51401511 CAAATGGCCCATTTGGCCCAGTT-TATATT
1 CATATGGCCCACTAGGCCCAATTCT-TATT
* *
51401540 CTTATGGCCCACTAGGCCCAATTCTCATT
1 CATATGGCCCACTAGGCCCAATTCTTATT
* * *
51401569 CATCTAGCCCATTAGGCCCAA
1 CATATGGCCCACTAGGCCCAA
51401590 ATCATATTAT
Statistics
Matches: 62, Mismatches: 14, Indels: 5
0.77 0.17 0.06
Matches are distributed among these distances:
28 18 0.29
29 43 0.69
30 1 0.02
ACGTcount: A:0.24, C:0.32, G:0.15, T:0.29
Consensus pattern (29 bp):
CATATGGCCCACTAGGCCCAATTCTTATT
Found at i:51401597 original size:58 final size:57
Alignment explanation
Indices: 51401485--51401597 Score: 145
Period size: 58 Copynumber: 2.0 Consensus size: 57
51401475 CATACATGCA
* * * ** *
51401485 TATGGCCCACTAGGCCCAATCTTATTCAAATGGCCCATTTGGCCCAGTTTATATTCT
1 TATGGCCCACTAGGCCCAATCTCATTCAAATAGCCCATTAGGCCCAAATCATATTCT
**
51401542 TATGGCCCACTAGGCCCAATTCTCATTCATCTAGCCCATTAGGCCCAAATCATATT
1 TATGGCCCACTAGGCCCAA-TCTCATTCAAATAGCCCATTAGGCCCAAATCATATT
51401598 ATATTCATGC
Statistics
Matches: 47, Mismatches: 8, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
57 19 0.40
58 28 0.60
ACGTcount: A:0.25, C:0.30, G:0.14, T:0.31
Consensus pattern (57 bp):
TATGGCCCACTAGGCCCAATCTCATTCAAATAGCCCATTAGGCCCAAATCATATTCT
Found at i:51401715 original size:19 final size:19
Alignment explanation
Indices: 51401679--51401715 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
51401669 CAGCCCATCA
*
51401679 GGCCCATTTAGCCTATTCC
1 GGCCCATTTAGCCAATTCC
*
51401698 GGCCCATTTGGCCAATTC
1 GGCCCATTTAGCCAATTC
51401716 TCAACCCAAG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.16, C:0.35, G:0.19, T:0.30
Consensus pattern (19 bp):
GGCCCATTTAGCCAATTCC
Found at i:51410280 original size:16 final size:16
Alignment explanation
Indices: 51410259--51410291 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
51410249 AATAAGAAGA
51410259 AGAGAAGAAGGAATCG
1 AGAGAAGAAGGAATCG
51410275 AGAGAAGAAGGAATCG
1 AGAGAAGAAGGAATCG
51410291 A
1 A
51410292 CTAAAACCAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.52, C:0.06, G:0.36, T:0.06
Consensus pattern (16 bp):
AGAGAAGAAGGAATCG
Found at i:51428576 original size:30 final size:31
Alignment explanation
Indices: 51428465--51428578 Score: 178
Period size: 31 Copynumber: 3.7 Consensus size: 31
51428455 TTAGTCTTGA
* *
51428465 CATAT-ACTGGGCCGAGGCCTTTCCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
51428495 CATATCACTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
*
51428526 CATATCACTGGGCTGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
*
51428557 CATTTCAC-GGGCCGAAGCCTTT
1 CATATCACTGGGCCGAAGCCTTT
51428579 ATTGCAAACG
Statistics
Matches: 78, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
30 18 0.23
31 60 0.77
ACGTcount: A:0.26, C:0.26, G:0.18, T:0.29
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTTCATAAAT
Found at i:51431399 original size:47 final size:47
Alignment explanation
Indices: 51431338--51431635 Score: 452
Period size: 47 Copynumber: 6.3 Consensus size: 47
51431328 CAGCCAAGAC
*
51431338 AGTGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
51431385 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
51431432 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
51431479 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * *
51431526 AGTGTATATATGTAATAAGGCCTAATGGCTGATGTGAGGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * * * * * *
51431573 AGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
51431620 AGTGCATAAATGTGAT
1 AGTGTATATATGTGAT
51431636 CAGTCCCGAA
Statistics
Matches: 228, Mismatches: 23, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 228 1.00
ACGTcount: A:0.32, C:0.09, G:0.31, T:0.29
Consensus pattern (47 bp):
AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
Found at i:51431813 original size:37 final size:37
Alignment explanation
Indices: 51431757--51431835 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
51431747 CCGAGCTCTA
* *
51431757 AAGACCCGATGACTACGTGTGG-GAATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
51431794 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
51431831 AAGAC
1 AAGAC
51431836 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 37 0.97
38 1 0.03
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:51434002 original size:27 final size:27
Alignment explanation
Indices: 51433972--51434036 Score: 78
Period size: 27 Copynumber: 2.4 Consensus size: 27
51433962 GGGCATATTC
51433972 GTCATTTTACCATACAAGGG-TATTACG
1 GTCATTTTACCATACAAGGGCT-TTACG
* * *
51433999 GTCACTTTACCCTACAGGGGCTTTACG
1 GTCATTTTACCATACAAGGGCTTTACG
*
51434026 GTCTTTTTACC
1 GTCATTTTACC
51434037 TATTAGGGGT
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
27 31 0.97
28 1 0.03
ACGTcount: A:0.22, C:0.25, G:0.18, T:0.35
Consensus pattern (27 bp):
GTCATTTTACCATACAAGGGCTTTACG
Found at i:51434120 original size:27 final size:27
Alignment explanation
Indices: 51434090--51434141 Score: 88
Period size: 27 Copynumber: 1.9 Consensus size: 27
51434080 GTAAATCTAC
51434090 AAACCAATGGTATTTC-AGTAATTTTGT
1 AAACCAATGGTATTTCTA-TAATTTTGT
51434117 AAACCAATGGTATTTCTATAATTTT
1 AAACCAATGGTATTTCTATAATTTT
51434142 TAGAAAGTTA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
27 23 0.96
28 1 0.04
ACGTcount: A:0.35, C:0.12, G:0.12, T:0.42
Consensus pattern (27 bp):
AAACCAATGGTATTTCTATAATTTTGT
Found at i:51434193 original size:27 final size:27
Alignment explanation
Indices: 51434150--51434276 Score: 175
Period size: 27 Copynumber: 4.7 Consensus size: 27
51434140 TTTAGAAAGT
** *
51434150 TAAGGGTATTTAT-GTAATTTTGTAAAT
1 TAAGGGTATTT-TGGTAATTTTACAAAC
* *
51434177 TAGGGGTATTTTGGTAATTTTACAAAT
1 TAAGGGTATTTTGGTAATTTTACAAAC
*
51434204 TAAGGGTATTTCGGTAATTTTACAAAC
1 TAAGGGTATTTTGGTAATTTTACAAAC
*
51434231 TAGGGGTATTTTGGTAATTTTACAAAC
1 TAAGGGTATTTTGGTAATTTTACAAAC
51434258 TAAGGGTATTTTGGTAATT
1 TAAGGGTATTTTGGTAATT
51434277 CTATCCTATA
Statistics
Matches: 90, Mismatches: 9, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
26 1 0.01
27 89 0.99
ACGTcount: A:0.31, C:0.05, G:0.21, T:0.43
Consensus pattern (27 bp):
TAAGGGTATTTTGGTAATTTTACAAAC
Found at i:51434235 original size:54 final size:54
Alignment explanation
Indices: 51434139--51434276 Score: 195
Period size: 54 Copynumber: 2.5 Consensus size: 54
51434129 TTTCTATAAT
* * ** *
51434139 TTTTAGAAAGTTAAGGGTATTTATGTAATTTTGTAAATTAGGGGTATTTTGGTAA
1 TTTTACAAA-TTAAGGGTATTTAGGTAATTTTACAAACTAGGGGTATTTTGGTAA
*
51434194 TTTTACAAATTAAGGGTATTTCGGTAATTTTACAAACTAGGGGTATTTTGGTAA
1 TTTTACAAATTAAGGGTATTTAGGTAATTTTACAAACTAGGGGTATTTTGGTAA
* *
51434248 TTTTACAAACTAAGGGTATTTTGGTAATT
1 TTTTACAAATTAAGGGTATTTAGGTAATT
51434277 CTATCCTATA
Statistics
Matches: 75, Mismatches: 8, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
54 67 0.89
55 8 0.11
ACGTcount: A:0.31, C:0.04, G:0.21, T:0.43
Consensus pattern (54 bp):
TTTTACAAATTAAGGGTATTTAGGTAATTTTACAAACTAGGGGTATTTTGGTAA
Found at i:51434343 original size:27 final size:27
Alignment explanation
Indices: 51434307--51434587 Score: 285
Period size: 27 Copynumber: 10.4 Consensus size: 27
51434297 GTAATTTCAC
* * * *
51434307 AATCGAGGGTAAAACGATAATTTTGTA
1 AATCGAGGGTAAAATGGTAATTCTATA
* *
51434334 AA-CTGAGGGTAAAATGGTAATTTTGTA
1 AATC-GAGGGTAAAATGGTAATTCTATA
* **
51434361 AATTGAGGGTAAAACAGTAATTCTATA
1 AATCGAGGGTAAAATGGTAATTCTATA
***
51434388 AATCGAGGGTACTTTGGTAATTCTATA
1 AATCGAGGGTAAAATGGTAATTCTATA
*
51434415 AATCGAGGGTAAAATGGTAATTCTGTA
1 AATCGAGGGTAAAATGGTAATTCTATA
*
51434442 AATCAAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAATGGTAATTCTATA
* * * *
51434469 AATTGAGGGTGAAATAGTAATTCTACA
1 AATCGAGGGTAAAATGGTAATTCTATA
* *
51434496 AATCAAGGGTAAAATGGTAATTTTATA
1 AATCGAGGGTAAAATGGTAATTCTATA
* * *
51434523 AATCGAAGGTAAAACGGTAATTTTATA
1 AATCGAGGGTAAAATGGTAATTCTATA
* * * * *
51434550 AATAGAGGGTAAAACGATAATTTTGTA
1 AATCGAGGGTAAAATGGTAATTCTATA
*
51434577 AATCAAGGGTA
1 AATCGAGGGTA
51434588 CTTTGGTAAT
Statistics
Matches: 213, Mismatches: 39, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
26 1 0.00
27 212 1.00
ACGTcount: A:0.41, C:0.07, G:0.22, T:0.31
Consensus pattern (27 bp):
AATCGAGGGTAAAATGGTAATTCTATA
Found at i:51436208 original size:21 final size:20
Alignment explanation
Indices: 51436165--51436209 Score: 63
Period size: 21 Copynumber: 2.2 Consensus size: 20
51436155 CTATCATTAT
*
51436165 TAAGTCTCTATTTATGTGGC
1 TAAGTCTCTATTTATGTAGC
*
51436185 TAAGTACTCTATTTATGTATC
1 TAAGT-CTCTATTTATGTAGC
51436206 TAAG
1 TAAG
51436210 ATTGGAGGTT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 5 0.23
21 17 0.77
ACGTcount: A:0.27, C:0.13, G:0.16, T:0.44
Consensus pattern (20 bp):
TAAGTCTCTATTTATGTAGC
Found at i:51440853 original size:122 final size:122
Alignment explanation
Indices: 51440703--51440948 Score: 492
Period size: 122 Copynumber: 2.0 Consensus size: 122
51440693 ATAACTATAA
51440703 ACCTATACCAATGCCATAAGATTCATAAATCTATATAACCATCAACTCATTAATGAGTAAGTTTA
1 ACCTATACCAATGCCATAAGATTCATAAATCTATATAACCATCAACTCATTAATGAGTAAGTTTA
51440768 TTAGTGTCACATATATTTATCATTCATAACATAATAGGATCTTAGAAGACATAATAT
66 TTAGTGTCACATATATTTATCATTCATAACATAATAGGATCTTAGAAGACATAATAT
51440825 ACCTATACCAATGCCATAAGATTCATAAATCTATATAACCATCAACTCATTAATGAGTAAGTTTA
1 ACCTATACCAATGCCATAAGATTCATAAATCTATATAACCATCAACTCATTAATGAGTAAGTTTA
51440890 TTAGTGTCACATATATTTATCATTCATAACATAATAGGATCTTAGAAGACATAATAT
66 TTAGTGTCACATATATTTATCATTCATAACATAATAGGATCTTAGAAGACATAATAT
51440947 AC
1 AC
51440949 AATCATCAAC
Statistics
Matches: 124, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
122 124 1.00
ACGTcount: A:0.41, C:0.17, G:0.09, T:0.33
Consensus pattern (122 bp):
ACCTATACCAATGCCATAAGATTCATAAATCTATATAACCATCAACTCATTAATGAGTAAGTTTA
TTAGTGTCACATATATTTATCATTCATAACATAATAGGATCTTAGAAGACATAATAT
Found at i:51446766 original size:64 final size:63
Alignment explanation
Indices: 51446697--51446903 Score: 161
Period size: 68 Copynumber: 3.1 Consensus size: 63
51446687 ATCATACATA
51446697 AATGTGATTCCTATGATTATGGATATTATGGGAAATTGTAAGTTCATATGATTTTTAATAAAGC
1 AATGTGATT-CTATGATTATGGATATTATGGGAAATTGTAAGTTCATATGATTTTTAATAAAGC
*** *
51446761 AATGTGTAATT-TAATG-TTATTGCCTTGATATTAAATGACA-TGTAAG-TCTATATGCATTGAA
1 AATGTG--ATTCT-ATGATTA-TG----GATATTATGGGAAATTGTAAGTTC-ATATG-ATT---
* * **
51446822 TTATCATACATA
53 TT-TAATAAAGC
*
51446834 AATGTGATTTCTATGATTATGGATATTATGGGAAATTGTAAGTTCATATGATTTTTAATAAGGC
1 AATGTGA-TTCTATGATTATGGATATTATGGGAAATTGTAAGTTCATATGATTTTTAATAAAGC
51446898 AATGTG
1 AATGTG
51446904 TAATTTAATG
Statistics
Matches: 107, Mismatches: 17, Indels: 38
0.66 0.10 0.23
Matches are distributed among these distances:
64 20 0.19
65 7 0.07
66 3 0.03
67 2 0.02
68 24 0.22
69 24 0.22
70 2 0.02
71 1 0.01
72 9 0.08
73 15 0.14
ACGTcount: A:0.34, C:0.07, G:0.18, T:0.41
Consensus pattern (63 bp):
AATGTGATTCTATGATTATGGATATTATGGGAAATTGTAAGTTCATATGATTTTTAATAAAGC
Found at i:51446814 original size:68 final size:67
Alignment explanation
Indices: 51446728--51446944 Score: 178
Period size: 68 Copynumber: 3.2 Consensus size: 67
51446718 GATATTATGG
51446728 GAAATTGTAAGTTCATATGATTTTTAATAAAGCAATGTGTAATTTAATGTTATTGCCTTGATATT
1 GAAA-TGTAAGTTCATATGATTTTTAATAAAGCAATGTGTAATTTAATGTTA-TGCCTTGATATT
51446793 AAAT
64 AAAT
* * * ** *
51446797 GACATGTAAG-TCTATATGCATTGAATTATCATACATAAATGTG--ATTTCTATGATTATG----
1 GAAATGTAAGTTC-ATATG-ATT---TT-TAATAAAGCAATGTGTAATTT-AATG-TTATGCCTT
***
51446855 GATATTATGG
58 GATATTAAAT
*
51446865 GAAATTGTAAGTTCATATGATTTTTAATAAGGCAATGTGTAATTTAATGTTACTGCCTTGATATT
1 GAAA-TGTAAGTTCATATGATTTTTAATAAAGCAATGTGTAATTTAATGTTA-TGCCTTGATATT
51446930 AAAT
64 AAAT
*
51446934 GAGATGTAAGT
1 GAAATGTAAGT
51446945 CTATATGTAA
Statistics
Matches: 111, Mismatches: 20, Indels: 35
0.67 0.12 0.21
Matches are distributed among these distances:
64 13 0.12
65 7 0.06
66 4 0.04
67 2 0.02
68 31 0.28
69 27 0.24
70 2 0.02
71 4 0.04
72 7 0.06
73 14 0.13
ACGTcount: A:0.35, C:0.07, G:0.17, T:0.41
Consensus pattern (67 bp):
GAAATGTAAGTTCATATGATTTTTAATAAAGCAATGTGTAATTTAATGTTATGCCTTGATATTAA
AT
Found at i:51446922 original size:137 final size:137
Alignment explanation
Indices: 51446676--51446951 Score: 516
Period size: 137 Copynumber: 2.0 Consensus size: 137
51446666 GTACATGAAG
51446676 TGCATTGAATTATCATACATAAATGTGATTCCTATGATTATGGATATTATGGGAAATTGTAAGTT
1 TGCATTGAATTATCATACATAAATGTGATTCCTATGATTATGGATATTATGGGAAATTGTAAGTT
*
51446741 CATATGATTTTTAATAAAGCAATGTGTAATTTAATGTTATTGCCTTGATATTAAATGACATGTAA
66 CATATGATTTTTAATAAAGCAATGTGTAATTTAATGTTACTGCCTTGATATTAAATGACATGTAA
51446806 GTCTATA
131 GTCTATA
*
51446813 TGCATTGAATTATCATACATAAATGTGATTTCTATGATTATGGATATTATGGGAAATTGTAAGTT
1 TGCATTGAATTATCATACATAAATGTGATTCCTATGATTATGGATATTATGGGAAATTGTAAGTT
* *
51446878 CATATGATTTTTAATAAGGCAATGTGTAATTTAATGTTACTGCCTTGATATTAAATGAGATGTAA
66 CATATGATTTTTAATAAAGCAATGTGTAATTTAATGTTACTGCCTTGATATTAAATGACATGTAA
51446943 GTCTATA
131 GTCTATA
51446950 TG
1 TG
51446952 TAAGTAATAC
Statistics
Matches: 135, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
137 135 1.00
ACGTcount: A:0.34, C:0.08, G:0.17, T:0.41
Consensus pattern (137 bp):
TGCATTGAATTATCATACATAAATGTGATTCCTATGATTATGGATATTATGGGAAATTGTAAGTT
CATATGATTTTTAATAAAGCAATGTGTAATTTAATGTTACTGCCTTGATATTAAATGACATGTAA
GTCTATA
Found at i:51447249 original size:64 final size:64
Alignment explanation
Indices: 51447168--51447350 Score: 176
Period size: 67 Copynumber: 2.8 Consensus size: 64
51447158 AGACATTATG
* *
51447168 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
51447232 ATGTAGCTAGGTCGCATGCGTGGCT-CCAGGTGAAGGATACCATGTAGACAAGAGAGCTACGAGA
1 ATGTAGCTAGGTCGCATGGGT-GATACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGA
51447296 TAA
62 TAA
* * * * *
51447299 AT-TGGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGTTG-CAAGAGAGC
1 ATGTAGCTAGGTCGCATGGGTGATACT-ATGTGTACACCATGTAGACAAGAGAGC
51447351 CGAACTCTAT
Statistics
Matches: 95, Mismatches: 18, Indels: 14
0.75 0.14 0.11
Matches are distributed among these distances:
62 9 0.09
63 9 0.09
64 23 0.24
65 4 0.04
66 18 0.19
67 32 0.34
ACGTcount: A:0.28, C:0.17, G:0.31, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:51449501 original size:35 final size:36
Alignment explanation
Indices: 51449433--51449522 Score: 155
Period size: 35 Copynumber: 2.5 Consensus size: 36
51449423 AGTACATCGA
*
51449433 TAATCCAGCCAAAACACACCAGATGCTTATAAGAGC
1 TAATCCATCCAAAACACACCAGATGCTTATAAGAGC
*
51449469 TAATCCATCCGAAACACACCA-ATGCTTATAAGAGC
1 TAATCCATCCAAAACACACCAGATGCTTATAAGAGC
51449504 TAATCCATCCAAAACACAC
1 TAATCCATCCAAAACACAC
51449523 AAAAATAGAG
Statistics
Matches: 51, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
35 32 0.63
36 19 0.37
ACGTcount: A:0.42, C:0.30, G:0.10, T:0.18
Consensus pattern (36 bp):
TAATCCATCCAAAACACACCAGATGCTTATAAGAGC
Found at i:51456571 original size:30 final size:30
Alignment explanation
Indices: 51456514--51456572 Score: 73
Period size: 30 Copynumber: 2.0 Consensus size: 30
51456504 TCCCGAGCCT
* *
51456514 AGGGGCAAAAGTGTAAATATGCTAAAGTTC
1 AGGGGCAAAAGTGTAAATATACCAAAGTTC
* * *
51456544 AGGGGCAAAATTGTAATTTTACCAAAGTT
1 AGGGGCAAAAGTGTAAATATACCAAAGTT
51456573 TGAGTTAAGG
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.39, C:0.10, G:0.24, T:0.27
Consensus pattern (30 bp):
AGGGGCAAAAGTGTAAATATACCAAAGTTC
Found at i:51461024 original size:30 final size:30
Alignment explanation
Indices: 51460990--51461050 Score: 104
Period size: 30 Copynumber: 2.0 Consensus size: 30
51460980 TTCCCGAGCC
51460990 TAGGGGTAAAAGTGTAAATTTGCAAAAGTT
1 TAGGGGTAAAAGTGTAAATTTGCAAAAGTT
* *
51461020 TAGGGGTAAAATTGTAATTTTGCAAAAGTT
1 TAGGGGTAAAAGTGTAAATTTGCAAAAGTT
51461050 T
1 T
51461051 GAGTTAAGGA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.38, C:0.03, G:0.25, T:0.34
Consensus pattern (30 bp):
TAGGGGTAAAAGTGTAAATTTGCAAAAGTT
Found at i:51475451 original size:40 final size:40
Alignment explanation
Indices: 51475399--51475752 Score: 541
Period size: 40 Copynumber: 8.9 Consensus size: 40
51475389 GTTATATATG
51475399 ATCCGGGCTAAGTCCCGAAGAGCATACGTGCTGGTGTTAT
1 ATCCGGGCTAAGTCCCGAAGAGCATACGTGCTGGTGTTAT
* *
51475439 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGAGTTAT
1 ATCCGGGCTAAGTCCCGAAGAGCATACGTGCTGGTGTTAT
*
51475479 ATCCGGGCTAAGTCCCGAAGAGCATACGTGCTGGAG-T-T
1 ATCCGGGCTAAGTCCCGAAGAGCATACGTGCTGGTGTTAT
* * *
51475517 ATCCGGGCTAAGTCCCGATGAGCATATGTGCTGGAGTTAT
1 ATCCGGGCTAAGTCCCGAAGAGCATACGTGCTGGTGTTAT
*
51475557 ATCCGAGCTAAGTCCCGAAGAGCATACGTGCTGGTGTTAT
1 ATCCGGGCTAAGTCCCGAAGAGCATACGTGCTGGTGTTAT
51475597 ATCCGGGCTAAGTCCCGAAGAGCATACGTGCTGGTGTTAT
1 ATCCGGGCTAAGTCCCGAAGAGCATACGTGCTGGTGTTAT
* * *
51475637 ATCCGGGCTAAGTCTCGAAGAGCATTCGTGCTGGAGTTAT
1 ATCCGGGCTAAGTCCCGAAGAGCATACGTGCTGGTGTTAT
** * * *
51475677 ATCAAGGTTAAGTCCCGAAGAGCATTCGTACTGGTGTTAT
1 ATCCGGGCTAAGTCCCGAAGAGCATACGTGCTGGTGTTAT
* *
51475717 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTGGTG
1 ATCCGGGCTAAGTCCCGAAGAGCATACGTGCTGGTG
51475753 ATGTGTATTC
Statistics
Matches: 288, Mismatches: 24, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
38 35 0.12
39 2 0.01
40 251 0.87
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.25
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGAGCATACGTGCTGGTGTTAT
Found at i:51475667 original size:158 final size:160
Alignment explanation
Indices: 51475399--51475752 Score: 561
Period size: 158 Copynumber: 2.2 Consensus size: 160
51475389 GTTATATATG
51475399 ATCCGGGCTAAGTCCCGAAGAGCATACGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAGAGCAT
1 ATCCGGGCTAAGTCCCGAAGAGCATACGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAGAGCAT
* **
51475464 TCGTGCTGGAGTTATATCCGGGCTAAGTCCCGAAGAGCATACGTGCTGGAG-T-TATCCGGGCTA
66 ACGTGCTGGAGTTATATCCGGGCTAAGTCCCGAAGAGCATACGTGCTGGAGTTATATCAAGGCTA
* *
51475527 AGTCCCGATGAGCATAT-GTGCTGGAGTTAT
131 AGTCCCGAAGAGCAT-TCGTACTGGAGTTAT
*
51475557 ATCCGAGCTAAGTCCCGAAGAGCATACGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAGAGCAT
1 ATCCGGGCTAAGTCCCGAAGAGCATACGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAGAGCAT
* * * *
51475622 ACGTGCTGGTGTTATATCCGGGCTAAGTCTCGAAGAGCATTCGTGCTGGAGTTATATCAAGGTTA
66 ACGTGCTGGAGTTATATCCGGGCTAAGTCCCGAAGAGCATACGTGCTGGAGTTATATCAAGGCTA
*
51475687 AGTCCCGAAGAGCATTCGTACTGGTGTTAT
131 AGTCCCGAAGAGCATTCGTACTGGAGTTAT
* *
51475717 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTGGTG
1 ATCCGGGCTAAGTCCCGAAGAGCATACGTGCTGGTG
51475753 ATGTGTATTC
Statistics
Matches: 179, Mismatches: 14, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
158 111 0.62
159 2 0.01
160 66 0.37
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.25
Consensus pattern (160 bp):
ATCCGGGCTAAGTCCCGAAGAGCATACGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAGAGCAT
ACGTGCTGGAGTTATATCCGGGCTAAGTCCCGAAGAGCATACGTGCTGGAGTTATATCAAGGCTA
AGTCCCGAAGAGCATTCGTACTGGAGTTAT
Found at i:51475966 original size:25 final size:25
Alignment explanation
Indices: 51475916--51475968 Score: 63
Period size: 25 Copynumber: 2.1 Consensus size: 25
51475906 TGTGTAACAA
* *
51475916 CAAATGAATAGGGGCACTATGTGTG
1 CAAATGAATAGAGGCACTATGAGTG
*
51475941 CAAATGATTAGAGGCACTGA-GAGTG
1 CAAATGAATAGAGGCACT-ATGAGTG
51475966 CAA
1 CAA
51475969 GTTCTTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 23 0.96
26 1 0.04
ACGTcount: A:0.36, C:0.13, G:0.30, T:0.21
Consensus pattern (25 bp):
CAAATGAATAGAGGCACTATGAGTG
Found at i:51489306 original size:30 final size:28
Alignment explanation
Indices: 51489272--51489335 Score: 96
Period size: 26 Copynumber: 2.3 Consensus size: 28
51489262 AAATTAATAC
51489272 TTAAAGTACAATCACTTCTTAATTTGATAT
1 TTAAAGT--AATCACTTCTTAATTTGATAT
51489302 TTAAAG--ATCACTTCTTAATTTGATAT
1 TTAAAGTAATCACTTCTTAATTTGATAT
51489328 TTAAAGTA
1 TTAAAGTA
51489336 TGTCTCTATT
Statistics
Matches: 32, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
26 26 0.81
30 6 0.19
ACGTcount: A:0.38, C:0.11, G:0.08, T:0.44
Consensus pattern (28 bp):
TTAAAGTAATCACTTCTTAATTTGATAT
Found at i:51489312 original size:26 final size:26
Alignment explanation
Indices: 51489282--51489333 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
51489272 TTAAAGTACA
51489282 ATCACTTCTTAATTTGATATTTAAAG
1 ATCACTTCTTAATTTGATATTTAAAG
51489308 ATCACTTCTTAATTTGATATTTAAAG
1 ATCACTTCTTAATTTGATATTTAAAG
51489334 TATGTCTCTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.35, C:0.12, G:0.08, T:0.46
Consensus pattern (26 bp):
ATCACTTCTTAATTTGATATTTAAAG
Found at i:51489482 original size:23 final size:23
Alignment explanation
Indices: 51489454--51489501 Score: 71
Period size: 23 Copynumber: 2.0 Consensus size: 23
51489444 ATACATAATA
51489454 AAATATATATAAAAATT-AGAAAT
1 AAATATATA-AAAAATTAAGAAAT
51489477 AAATATATAAAAAATTCAAGAAAT
1 AAATATATAAAAAATT-AAGAAAT
51489501 A
1 A
51489502 TATAAAATCT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
22 7 0.30
23 9 0.39
24 7 0.30
ACGTcount: A:0.67, C:0.02, G:0.04, T:0.27
Consensus pattern (23 bp):
AAATATATAAAAAATTAAGAAAT
Found at i:51489484 original size:21 final size:20
Alignment explanation
Indices: 51489453--51489529 Score: 79
Period size: 20 Copynumber: 3.9 Consensus size: 20
51489443 TATACATAAT
*
51489453 AAAATATATATAAAAATTAG
1 AAAAAATATATAAAAATTAG
*
51489473 AAATAAATATATAAAAAATT-C
1 AAA-AAATATAT-AAAAATTAG
*
51489494 AAGAAATATAT-AAAATCTAG
1 AAAAAATATATAAAAAT-TAG
51489514 AAAAAA-ATATAAAAAT
1 AAAAAATATATAAAAAT
51489530 AAAATTTACA
Statistics
Matches: 47, Mismatches: 5, Indels: 10
0.76 0.08 0.16
Matches are distributed among these distances:
18 5 0.11
19 5 0.11
20 21 0.45
21 9 0.19
22 7 0.15
ACGTcount: A:0.68, C:0.03, G:0.04, T:0.26
Consensus pattern (20 bp):
AAAAAATATATAAAAATTAG
Found at i:51489613 original size:10 final size:11
Alignment explanation
Indices: 51489584--51489611 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
51489574 TTAATAATAT
51489584 TATTTTTAAAA
1 TATTTTTAAAA
51489595 TATTTTTAAAA
1 TATTTTTAAAA
51489606 TATTTT
1 TATTTT
51489612 AATTTTTTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (11 bp):
TATTTTTAAAA
Found at i:51489841 original size:26 final size:26
Alignment explanation
Indices: 51489785--51489842 Score: 64
Period size: 26 Copynumber: 2.2 Consensus size: 26
51489775 ATTAAAAATT
* *
51489785 AAAAAATTATTTTAATACCTAATTGA
1 AAAAAATTATTTTAATACCAAAATGA
* *
51489811 GAAAAATT-TTTATAATACGAAAATGA
1 AAAAAATTATTT-TAATACCAAAATGA
51489837 AAAAAA
1 AAAAAA
51489843 AATATTTCAA
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
25 3 0.12
26 23 0.88
ACGTcount: A:0.57, C:0.05, G:0.07, T:0.31
Consensus pattern (26 bp):
AAAAAATTATTTTAATACCAAAATGA
Found at i:51490814 original size:54 final size:53
Alignment explanation
Indices: 51490695--51490827 Score: 166
Period size: 54 Copynumber: 2.5 Consensus size: 53
51490685 ATGGTAAGGG
* * * *
51490695 TTAATTTTAAATTTAGAATATTATTTA-ATTTTTTTAATTTATGTAATTTTAA
1 TTAATTTTAATTTTATAATATTATTTATATTCTTTTAATTTATGTAATTTAAA
* *
51490747 TTAATTTTAATTTTTTAATATTATTTATTATTCTTTTCATTTATGTAATTTAAA
1 TTAATTTTAATTTTATAATATTATTTA-TATTCTTTTAATTTATGTAATTTAAA
51490801 TTAATTTGT-ATTTTATAAT-TT-TTTATA
1 TTAATTT-TAATTTTATAATATTATTTATA
51490828 ACAATCTGTA
Statistics
Matches: 71, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
51 2 0.03
52 28 0.39
53 2 0.03
54 38 0.54
55 1 0.01
ACGTcount: A:0.33, C:0.02, G:0.03, T:0.62
Consensus pattern (53 bp):
TTAATTTTAATTTTATAATATTATTTATATTCTTTTAATTTATGTAATTTAAA
Found at i:51492375 original size:18 final size:18
Alignment explanation
Indices: 51492352--51492394 Score: 68
Period size: 18 Copynumber: 2.4 Consensus size: 18
51492342 TGCCAAGTGG
*
51492352 GTATCCTAGCCCTTATAT
1 GTATCCTAACCCTTATAT
51492370 GTATCCTAACCCTTATAT
1 GTATCCTAACCCTTATAT
*
51492388 GTTTCCT
1 GTATCCT
51492395 TTTTCCAGTC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.21, C:0.28, G:0.09, T:0.42
Consensus pattern (18 bp):
GTATCCTAACCCTTATAT
Found at i:51496140 original size:126 final size:126
Alignment explanation
Indices: 51495907--51496175 Score: 358
Period size: 126 Copynumber: 2.1 Consensus size: 126
51495897 GGCCAAGCAT
* * * * * * * *
51495907 GAACTACTGTAGAAAAATAGCGTCCACATGAGAGCTTTTTTTAGAACTTTTGTTGATATTGCATC
1 GAACTACTGTAGAAAAAGAACGTCCACATGAGAGCTTTTTTAAAAAATTTTGCTGACATTACATC
* * * *
51495972 ATGCTTGAAGCGTTTTTGACACTATTTGTTTAGAAATATCTTCTCAAATTTATTTTTTCAG
66 ATACTTGAAGCGTTTTTGACACTATTTGTTTAGAAACATCTTCTCAAAATTATTTTTTCAA
* * * *
51496033 GAACTACTATAGAAAAAGAACGTCCACGTGGGAGCTTTTTTAAAAAATTTTGCTGACATTACGTC
1 GAACTACTGTAGAAAAAGAACGTCCACATGAGAGCTTTTTTAAAAAATTTTGCTGACATTACATC
* * *
51496098 ATACTTGAAGCGTTTTTGACACTATTTGTTTGGAAACGTCTTCTTAAAATTATTTTTTCAA
66 ATACTTGAAGCGTTTTTGACACTATTTGTTTAGAAACATCTTCTCAAAATTATTTTTTCAA
*
51496159 GAACTATTGTAGAAAAA
1 GAACTACTGTAGAAAAA
51496176 CCATAAACCC
Statistics
Matches: 122, Mismatches: 21, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
126 122 1.00
ACGTcount: A:0.32, C:0.14, G:0.16, T:0.38
Consensus pattern (126 bp):
GAACTACTGTAGAAAAAGAACGTCCACATGAGAGCTTTTTTAAAAAATTTTGCTGACATTACATC
ATACTTGAAGCGTTTTTGACACTATTTGTTTAGAAACATCTTCTCAAAATTATTTTTTCAA
Found at i:51496333 original size:42 final size:43
Alignment explanation
Indices: 51496242--51496339 Score: 110
Period size: 42 Copynumber: 2.3 Consensus size: 43
51496232 TTAAAATCTA
* * *
51496242 CTAAAATCCTAAACCCTAACTTATTCTAACAAAAACTTAAAAC
1 CTAAAAACCTAAACCCTAAATTATTCTAACAAAAACCTAAAAC
* * * *
51496285 CT-AAAACCTAAACCCTAAATTATTTTAGCAAAACCCT-AACC
1 CTAAAAACCTAAACCCTAAATTATTCTAACAAAAACCTAAAAC
51496326 CTAAAAACCCTAAA
1 CTAAAAA-CCTAAA
51496340 AAACCCTAGG
Statistics
Matches: 46, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
41 5 0.11
42 33 0.72
43 8 0.17
ACGTcount: A:0.48, C:0.28, G:0.01, T:0.23
Consensus pattern (43 bp):
CTAAAAACCTAAACCCTAAATTATTCTAACAAAAACCTAAAAC
Found at i:51505691 original size:51 final size:49
Alignment explanation
Indices: 51505573--51505712 Score: 199
Period size: 51 Copynumber: 2.8 Consensus size: 49
51505563 AGGCTATCTA
* *
51505573 GTACGCATAGTAGCCTGCACTTAGTACTATACATGCGACCAATTATCCG
1 GTACGCATAGTAGCCTGCACTTAGTACTACACATGTGACCAATTATCCG
* * * * *
51505622 GTACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCGG
1 GTACGCATAGTAGCCTGCACTTAGTACTACACATGTGA-CCAA-TTATCCG
51505673 GTACGCATAGTAGCCTGCACTTAGTACTACACATGTGACC
1 GTACGCATAGTAGCCTGCACTTAGTACTACACATGTGACC
51505713 TCACAATAGA
Statistics
Matches: 78, Mismatches: 11, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
49 33 0.42
50 4 0.05
51 41 0.53
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.26
Consensus pattern (49 bp):
GTACGCATAGTAGCCTGCACTTAGTACTACACATGTGACCAATTATCCG
Found at i:51505989 original size:27 final size:27
Alignment explanation
Indices: 51505959--51506012 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
51505949 TCATACAACC
* *
51505959 CATGTAATAGTAATTTAACATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
**
51505986 CATGTAACAATAATTTGCCATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
51506013 TCACGTGACA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.39, C:0.15, G:0.07, T:0.39
Consensus pattern (27 bp):
CATGTAACAATAATTTAACATTCAATT
Found at i:51512268 original size:22 final size:22
Alignment explanation
Indices: 51512243--51512292 Score: 91
Period size: 22 Copynumber: 2.3 Consensus size: 22
51512233 TTAAGATACA
*
51512243 ATGTGACATTTCACTAGGAACT
1 ATGTGACATGTCACTAGGAACT
51512265 ATGTGACATGTCACTAGGAACT
1 ATGTGACATGTCACTAGGAACT
51512287 ATGTGA
1 ATGTGA
51512293 ATATGAGCTC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.32, C:0.16, G:0.22, T:0.30
Consensus pattern (22 bp):
ATGTGACATGTCACTAGGAACT
Found at i:51513533 original size:42 final size:42
Alignment explanation
Indices: 51513474--51513554 Score: 103
Period size: 42 Copynumber: 1.9 Consensus size: 42
51513464 AGAAATTGTC
* *
51513474 CACACGGTTAGACACACGGGCATGTGTCT-AGGCCGTGTGTGA
1 CACACGGTTAGACACACGGCCATATGTCTCA-GCCGTGTGTGA
*
51513516 CACACGAG-TAGAGACACGGCCATATGTCTCAGCCGTGTG
1 CACACG-GTTAGACACACGGCCATATGTCTCAGCCGTGTG
51513555 AAGGACACGG
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
42 32 0.94
43 2 0.06
ACGTcount: A:0.23, C:0.26, G:0.31, T:0.20
Consensus pattern (42 bp):
CACACGGTTAGACACACGGCCATATGTCTCAGCCGTGTGTGA
Found at i:51516686 original size:49 final size:49
Alignment explanation
Indices: 51516619--51516798 Score: 188
Period size: 49 Copynumber: 3.7 Consensus size: 49
51516609 TGTTGCGTGT
*
51516619 CAGTGTAAGACCTGTCTGGGACATGGCATCGACACCGATAGATGAGAGC
1 CAGTGTAAGACCTGTCTGGGACATGGCATCGACACCGATAGATGAAAGC
* * * *
51516668 CAGTGTAAGACCTGTCTGGAACACGGCATC-A-ACCTTGATATATGAAAGT
1 CAGTGTAAGACCTGTCTGGGACATGGCATCGACACC--GATAGATGAAAGC
* *** **
51516717 TAGTGTAAGACCTGTCTGGGACATGGCATCGACTTTGAT-G-TGCTAGC
1 CAGTGTAAGACCTGTCTGGGACATGGCATCGACACCGATAGATGAAAGC
* *
51516764 CAGTGTAAGACCATGTCTAGGACATGGCGTCGACA
1 CAGTGTAAGACC-TGTCTGGGACATGGCATCGACA
51516799 TCTTATCCCA
Statistics
Matches: 107, Mismatches: 19, Indels: 11
0.78 0.14 0.08
Matches are distributed among these distances:
47 18 0.17
48 20 0.19
49 68 0.64
50 1 0.01
ACGTcount: A:0.28, C:0.21, G:0.28, T:0.23
Consensus pattern (49 bp):
CAGTGTAAGACCTGTCTGGGACATGGCATCGACACCGATAGATGAAAGC
Found at i:51522575 original size:63 final size:64
Alignment explanation
Indices: 51522395--51522646 Score: 199
Period size: 63 Copynumber: 3.9 Consensus size: 64
51522385 ATATAGTTCG
* * * * *
51522395 GCTCTCTTGTAC-ACATGGTGAACACTTAGTACCACCCATGTGACCTAGC--CAGTTTATCTCGT
1 GCTCTCTTGT-CTACATGGTGTACACTTAGTACCACCCATGCGACCTAGCTACA-TATATCCCAT
51522457 A
64 A
* * * *
51522458 GCTCTCTTGTCTACATGGTGTCCTTCACTTGGAACCACGCATGCGACCTAGCTACATATATCCCA
1 GCTCTCTTGTCTACATGGTG---TACACTTAGTACCACCCATGCGACCTAGCTACATATATCCCA
51522523 TA
63 TA
* * *
51522525 GCTCTCTT-TCTACATGGTGTACACATAGTATCACCCATGCGACCTAGCTACATCATAATGTCTC
1 GCTCTCTTGTCTACATGGTGTACACTTAGTACCACCCATGCGACCTAGCTACAT-AT-A--TCCC
*
51522589 GTA
62 ATA
* * * * ** *
51522592 GCTCTCTTGTAC-ACATGATGTGCACTCAGCACCATACATGTGACCTAGCTACATA
1 GCTCTCTTGT-CTACATGGTGTACACTTAGTACCACCCATGCGACCTAGCTACATA
51522647 CCATCTGTAT
Statistics
Matches: 151, Mismatches: 26, Indels: 20
0.77 0.13 0.10
Matches are distributed among these distances:
62 1 0.01
63 46 0.30
64 2 0.01
65 1 0.01
66 34 0.23
67 30 0.20
68 36 0.24
69 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.16, T:0.30
Consensus pattern (64 bp):
GCTCTCTTGTCTACATGGTGTACACTTAGTACCACCCATGCGACCTAGCTACATATATCCCATA
Found at i:51523346 original size:30 final size:30
Alignment explanation
Indices: 51523312--51523372 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
51523302 TCCTTAACTC
51523312 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
51523342 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
51523372 A
1 A
51523373 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:51524262 original size:45 final size:45
Alignment explanation
Indices: 51524211--51524386 Score: 174
Period size: 50 Copynumber: 3.7 Consensus size: 45
51524201 TACGAGAGCT
*
51524211 AGTGTAAGACCATGTCTGGGACATGGCATCGGCTTGATATGTGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCTTGATATGTGCC
* *
51524256 AGTGTAAGACCATGTCTGGGACATGGCATTGGCACTAATAGATGA-GAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGG--CT--T-GAT-ATGTGCC
* * * * *
51524306 AATGTAAGACCATGCCTGGGACATGACATCGACTTTGATGTGTGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGC-TTGATATGT--GCC
* *
51524354 AGTGTAAGACCATGTCCGGGACATGGTATCGGC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGC
51524387 ACCTTACCCT
Statistics
Matches: 105, Mismatches: 16, Indels: 17
0.76 0.12 0.12
Matches are distributed among these distances:
45 31 0.30
46 4 0.04
47 3 0.03
48 31 0.30
49 2 0.02
50 33 0.31
51 1 0.01
ACGTcount: A:0.26, C:0.19, G:0.30, T:0.24
Consensus pattern (45 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCTTGATATGTGCC
Found at i:51526510 original size:77 final size:78
Alignment explanation
Indices: 51526383--51526538 Score: 269
Period size: 77 Copynumber: 2.0 Consensus size: 78
51526373 GCGTGTTACA
51526383 AAAATATCATCGATGAAAACAACCACGAACCTGTCCAGGTATGGCCTGAAAATTCTGTTCACTAA
1 AAAATATCATCGATGAAAACAACCACGAACCTGTCCAGGTATGGCCTGAAAATTCTGTTCACTAA
51526448 ATCCATAAA-ACC
66 ATCCATAAATACC
* * * *
51526460 AAAATATCATCGATGAAAACAACCACGAATCTGTCTAGGTTTGGTCTGAAAATTCTGTTCACTAA
1 AAAATATCATCGATGAAAACAACCACGAACCTGTCCAGGTATGGCCTGAAAATTCTGTTCACTAA
51526525 ATCCATAAATACC
66 ATCCATAAATACC
51526538 A
1 A
51526539 TCGGGGCATT
Statistics
Matches: 74, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
77 70 0.95
78 4 0.05
ACGTcount: A:0.40, C:0.22, G:0.13, T:0.25
Consensus pattern (78 bp):
AAAATATCATCGATGAAAACAACCACGAACCTGTCCAGGTATGGCCTGAAAATTCTGTTCACTAA
ATCCATAAATACC
Found at i:51528896 original size:43 final size:44
Alignment explanation
Indices: 51528837--51528997 Score: 168
Period size: 43 Copynumber: 3.7 Consensus size: 44
51528827 CACAATGCCC
* * *
51528837 TATCCTAGATATGGTCTTACATGCT-ATCACATAT-CGATGCCAC
1 TATCCCAGACATGGTCTTACATG-TAATCACATATACGATGCCAA
* * * *
51528880 TATCCCAGACAAGGTCTTACACGAAATCATA-ATACGATGCCAA
1 TATCCCAGACATGGTCTTACATGTAATCACATATACGATGCCAA
* * * *
51528923 TGTCCCAGACATGGTCTTTCATGTAATCA-AAATACAATGCCAA
1 TATCCCAGACATGGTCTTACATGTAATCACATATACGATGCCAA
* *
51528966 TGTCCCAAACATGGTCTTACATGTAATCACAT
1 TATCCCAGACATGGTCTTACATGTAATCACAT
51528998 CTTGATAACC
Statistics
Matches: 98, Mismatches: 16, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
42 3 0.03
43 94 0.96
44 1 0.01
ACGTcount: A:0.34, C:0.25, G:0.14, T:0.28
Consensus pattern (44 bp):
TATCCCAGACATGGTCTTACATGTAATCACATATACGATGCCAA
Found at i:51533694 original size:57 final size:57
Alignment explanation
Indices: 51533598--51533736 Score: 144
Period size: 57 Copynumber: 2.4 Consensus size: 57
51533588 GCTATATTAT
* * * *
51533598 AGGATTACCAGTCTAGGCTAAATCCTTTTCATATCATATACTCTGAAG-AGCTTA-AT-
1 AGGATTACCCGTCTGGGCTAAATCCCTCTCATATCATATACTC--AAGCAGCTTACATC
*
51533654 ATGGATTACCCGTCTGGGCTAAATCCACTCT-ATAGT-ATATACTCAAGCGGCTTACATC
1 A-GGATTACCCGTCTGGGCTAAATCC-CTCTCATA-TCATATACTCAAGCAGCTTACATC
*
51533712 AGGATTACCCGTCTGAGCTAAATCC
1 AGGATTACCCGTCTGGGCTAAATCC
51533737 TTTATACAAC
Statistics
Matches: 71, Mismatches: 6, Indels: 11
0.81 0.07 0.12
Matches are distributed among these distances:
55 3 0.04
56 6 0.08
57 58 0.82
58 4 0.06
ACGTcount: A:0.29, C:0.24, G:0.17, T:0.30
Consensus pattern (57 bp):
AGGATTACCCGTCTGGGCTAAATCCCTCTCATATCATATACTCAAGCAGCTTACATC
Found at i:51538753 original size:23 final size:22
Alignment explanation
Indices: 51538727--51538776 Score: 57
Period size: 23 Copynumber: 2.2 Consensus size: 22
51538717 CTTCCTTTTG
* *
51538727 TTTTCTTTTTCTTC-CTTTCGCT
1 TTTTCCTTTGCTTCTCTTTC-CT
51538749 CTTTTCCTTTGCTTCTCTTTCCT
1 -TTTTCCTTTGCTTCTCTTTCCT
51538772 TTTTC
1 TTTTC
51538777 GCTTGGTTAC
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
22 5 0.21
23 14 0.58
24 5 0.21
ACGTcount: A:0.00, C:0.30, G:0.04, T:0.66
Consensus pattern (22 bp):
TTTTCCTTTGCTTCTCTTTCCT
Found at i:51541222 original size:43 final size:44
Alignment explanation
Indices: 51541127--51541281 Score: 140
Period size: 43 Copynumber: 3.6 Consensus size: 44
51541117 ATCGAGATGT
* * * * *
51541127 GATTACATGTAAGACCATGTTTGGGACATTGACAT-TGTATTGA
1 GATTACGTGTAAGACCATGTCTGGGACATTGGCATCTGTAATCA
51541170 GATTACGTGTAAGACCATGTCTGGGACATTGGCATCAT-TAATCA
1 GATTACGTGTAAGACCATGTCTGGGACATTGGCATC-TGTAATCA
* * * * *
51541214 -ATTTCGTGTAAGACCCTGTCTGAGACAGTGGCATC-G-ATATGA
1 GATTACGTGTAAGACCATGTCTGGGACATTGGCATCTGTA-ATCA
* * *
51541256 GATAACATGTAAGACCATATCTGGGA
1 GATTACGTGTAAGACCATGTCTGGGA
51541282 TATCGCATTG
Statistics
Matches: 91, Mismatches: 16, Indels: 10
0.78 0.14 0.09
Matches are distributed among these distances:
41 1 0.01
42 3 0.03
43 82 0.90
44 4 0.04
45 1 0.01
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (44 bp):
GATTACGTGTAAGACCATGTCTGGGACATTGGCATCTGTAATCA
Found at i:51542143 original size:24 final size:23
Alignment explanation
Indices: 51542086--51542144 Score: 57
Period size: 24 Copynumber: 2.5 Consensus size: 23
51542076 TGGTATGTTT
*
51542086 TGATTATGGAATTGAGTGGTTGAA
1 TGATTAT-GAATAGAGTGGTTGAA
* *
51542110 TGGTTGTGAATAGA-TGGTGTGATA
1 TGATTATGAATAGAGTGGT-TGA-A
51542134 TGATTATGAAT
1 TGATTATGAAT
51542145 TGGCATGTTT
Statistics
Matches: 28, Mismatches: 5, Indels: 4
0.76 0.14 0.11
Matches are distributed among these distances:
22 4 0.14
23 9 0.32
24 15 0.54
ACGTcount: A:0.29, C:0.00, G:0.32, T:0.39
Consensus pattern (23 bp):
TGATTATGAATAGAGTGGTTGAA
Found at i:51546833 original size:50 final size:50
Alignment explanation
Indices: 51546709--51546992 Score: 248
Period size: 50 Copynumber: 5.6 Consensus size: 50
51546699 AGCTAACTGG
* * * * *
51546709 TACACATAGTAGCCTGCACTTAGTACTACACATGCGACC-AACAATC-CA
1 TACACATAGTAGCCTACACTTAGTACTACACACGTGACCTAACCATCTGA
* *
51546757 GTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGA
1 -TACACATAGTAGCCTACACTTAGTACTACACACGTGACCTAACCATCTGA
* *** *** * *
51546808 TACACGTAGTAGCCTACACTTAGTACTACACACGTGATAGAAGTTGTCGGG
1 TACACATAGTAGCCTACACTTAGTACTACACACGTGACCTAA-CCATCTGA
* * * * * * *
51546859 TACGCATAGGAGCCTACACTTAGTACTACACATGCGACATAACTATCTGG
1 TACACATAGTAGCCTACACTTAGTACTACACACGTGACCTAACCATCTGA
** * *
51546909 TACATGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAAAACCATCTTA
1 TACACATAGTAGCCTACACTTAGTACTACACACGTGACCT--AACCATCTGA
* * *
51546961 AACACATAGTAGCCTATACATAGTACTACACA
1 TACACATAGTAGCCTACACTTAGTACTACACA
51546993 TGTGTTCTCA
Statistics
Matches: 189, Mismatches: 41, Indels: 7
0.80 0.17 0.03
Matches are distributed among these distances:
49 36 0.19
50 81 0.43
51 39 0.21
52 33 0.17
ACGTcount: A:0.33, C:0.27, G:0.16, T:0.24
Consensus pattern (50 bp):
TACACATAGTAGCCTACACTTAGTACTACACACGTGACCTAACCATCTGA
Found at i:51549400 original size:28 final size:29
Alignment explanation
Indices: 51549360--51549471 Score: 147
Period size: 29 Copynumber: 3.9 Consensus size: 29
51549350 TGGGAAGTAG
*
51549360 TTGGGCCTGATGGGCTATATGAATGTGA-
1 TTGGGCCTGATGGGCCATATGAATGTGAT
51549388 TTGGGCCTGATGGGCCATATGAATGTGAT
1 TTGGGCCTGATGGGCCATATGAATGTGAT
* ** *
51549417 TTGGGCCTAATGGGCCATACAAATGTAAT
1 TTGGGCCTGATGGGCCATATGAATGTGAT
*
51549446 TTGGGCCT-AGTGGGCCATATGCATGT
1 TTGGGCCTGA-TGGGCCATATGAATGT
51549472 ATGTATACTT
Statistics
Matches: 74, Mismatches: 8, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
28 28 0.38
29 46 0.62
ACGTcount: A:0.22, C:0.15, G:0.32, T:0.30
Consensus pattern (29 bp):
TTGGGCCTGATGGGCCATATGAATGTGAT
Found at i:51549466 original size:58 final size:57
Alignment explanation
Indices: 51549360--51549471 Score: 145
Period size: 57 Copynumber: 1.9 Consensus size: 57
51549350 TGGGAAGTAG
* * ** *
51549360 TTGGGCCTGATGGGCTATATGAATGTGATTGGGCCTGATGGGCCATATGAATGTGAT
1 TTGGGCCTAATGGGCCATACAAATGTAATTGGGCCTGATGGGCCATATGAATGTGAT
*
51549417 TTGGGCCTAATGGGCCATACAAATGTAATTTGGGCCT-AGTGGGCCATATGCATGT
1 TTGGGCCTAATGGGCCATACAAATGTAA-TTGGGCCTGA-TGGGCCATATGAATGT
51549472 ATGTATACTT
Statistics
Matches: 47, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
57 24 0.51
58 23 0.49
ACGTcount: A:0.22, C:0.15, G:0.32, T:0.30
Consensus pattern (57 bp):
TTGGGCCTAATGGGCCATACAAATGTAATTGGGCCTGATGGGCCATATGAATGTGAT
Found at i:51549922 original size:24 final size:24
Alignment explanation
Indices: 51549890--51549946 Score: 114
Period size: 24 Copynumber: 2.4 Consensus size: 24
51549880 TTTGAAATTT
51549890 TTATTATTAGATATATTTATAAAA
1 TTATTATTAGATATATTTATAAAA
51549914 TTATTATTAGATATATTTATAAAA
1 TTATTATTAGATATATTTATAAAA
51549938 TTATTATTA
1 TTATTATTA
51549947 TTATAATTAT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 33 1.00
ACGTcount: A:0.44, C:0.00, G:0.04, T:0.53
Consensus pattern (24 bp):
TTATTATTAGATATATTTATAAAA
Found at i:51549954 original size:15 final size:15
Alignment explanation
Indices: 51549936--51549964 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
51549926 ATATTTATAA
51549936 AATTATTATTATTAT
1 AATTATTATTATTAT
51549951 AATTATTATTATTA
1 AATTATTATTATTA
51549965 GATAGAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (15 bp):
AATTATTATTATTAT
Found at i:51549957 original size:27 final size:26
Alignment explanation
Indices: 51549884--51549957 Score: 89
Period size: 24 Copynumber: 2.8 Consensus size: 26
51549874 TTGATATTTG
* *
51549884 AAATTTTTATTATTAGATATATTTATA
1 AAATTATTATTATTATAT-TATTTATA
*
51549911 AAATTATTATTA-GATA-TATTTATA
1 AAATTATTATTATTATATTATTTATA
51549935 AAATTATTATTATTATAATTATT
1 AAATTATTATTATTAT-ATTATT
51549958 ATTATTAGAT
Statistics
Matches: 40, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
24 20 0.50
25 2 0.05
26 3 0.08
27 15 0.38
ACGTcount: A:0.43, C:0.00, G:0.03, T:0.54
Consensus pattern (26 bp):
AAATTATTATTATTATATTATTTATA
Found at i:51556138 original size:16 final size:17
Alignment explanation
Indices: 51556106--51556138 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
51556096 CATCAAGAAG
51556106 GGTTTTCAATGAAAACAT
1 GGTTTTCAA-GAAAACAT
51556124 GGTTTTCAA-AAAACA
1 GGTTTTCAAGAAAACA
51556139 CTTCAATGTG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
18 9 0.60
ACGTcount: A:0.42, C:0.12, G:0.15, T:0.30
Consensus pattern (17 bp):
GGTTTTCAAGAAAACAT
Found at i:51556407 original size:27 final size:27
Alignment explanation
Indices: 51556377--51556662 Score: 262
Period size: 27 Copynumber: 10.7 Consensus size: 27
51556367 TAATAAAGAG
* *
51556377 AAATTACTAAAATACCCTCAATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
**
51556404 AAATTACCAAAATACCCTCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* * *
51556431 AAATTACCGAAACACCCTCGA-TTGTG
1 AAATTACTGAAATACCCTCGATTTGTA
* *
51556457 AAATTA-TCGAAATACCCTTGATTTATA
1 AAATTACT-GAAATACCCTCGATTTGTA
* *
51556484 AAATTACTGAAATACCCCCGATTTGTG
1 AAATTACTGAAATACCCTCGATTTGTA
* * *
51556511 AAATTACCGAAACA-CCTTGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* *
51556537 AAATTA-TCAAAATATCCTCGATTTGTA
1 AAATTACT-GAAATACCCTCGATTTGTA
* **
51556564 AAATTA-TCAAAATACCCTTAATTTGTA
1 AAATTACT-GAAATACCCTCGATTTGTA
*
51556591 AAATTACTGAAATACCCCCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* * * *
51556618 AACTTA-TCAAAATACCCTTG-TAGTGTA
1 AAATTACT-GAAATACCCTCGAT-TTGTA
51556645 AAATTACTGAAATACCCT
1 AAATTACTGAAATACCCT
51556663 TGTAGTGTAA
Statistics
Matches: 213, Mismatches: 37, Indels: 18
0.79 0.14 0.07
Matches are distributed among these distances:
26 42 0.20
27 168 0.79
28 3 0.01
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.32
Consensus pattern (27 bp):
AAATTACTGAAATACCCTCGATTTGTA
Found at i:51556509 original size:80 final size:80
Alignment explanation
Indices: 51556376--51556662 Score: 314
Period size: 80 Copynumber: 3.6 Consensus size: 80
51556366 ATAATAAAGA
* *
51556376 GAAATTA-CTAAAATACCCTCAATTTGTAAAATTACCAAAATACCCTCGATTTGTAAAATTACCG
1 GAAATTATC-AAAATACCCTCGATTTGTAAAATTACTAAAATACCCTCGATTTGTAAAATTACCG
51556440 AAACACCCTCGATTGT
65 AAACACCCTCGATTGT
* * * * * *
51556456 GAAATTATCGAAATACCCTTGATTTATAAAATTACTGAAATACCCCCGATTTGTGAAATTACCGA
1 GAAATTATCAAAATACCCTCGATTTGTAAAATTACTAAAATACCCTCGATTTGTAAAATTACCGA
*
51556521 AACA-CCTTGATTTGT
66 AACACCCTCGA-TTGT
* * ** *
51556536 AAAATTATCAAAATATCCTCGATTTGTAAAATTA-TCAAAATACCCTTAATTTGTAAAATTACTG
1 GAAATTATCAAAATACCCTCGATTTGTAAAATTACT-AAAATACCCTCGATTTGTAAAATTACCG
* *
51556600 AAATACCCCCGATT-T
65 AAACACCCTCGATTGT
* * *
51556615 GTAAACTTATCAAAATACCCTTG-TAGTGTAAAATTACTGAAATACCCT
1 G-AAA-TTATCAAAATACCCTCGAT-TTGTAAAATTACTAAAATACCCT
51556663 TGTAGTGTAA
Statistics
Matches: 171, Mismatches: 28, Indels: 15
0.80 0.13 0.07
Matches are distributed among these distances:
79 7 0.04
80 124 0.73
81 39 0.23
82 1 0.01
ACGTcount: A:0.39, C:0.20, G:0.09, T:0.32
Consensus pattern (80 bp):
GAAATTATCAAAATACCCTCGATTTGTAAAATTACTAAAATACCCTCGATTTGTAAAATTACCGA
AACACCCTCGATTGT
Found at i:51556568 original size:107 final size:107
Alignment explanation
Indices: 51556377--51556635 Score: 340
Period size: 107 Copynumber: 2.4 Consensus size: 107
51556367 TAATAAAGAG
* * * * *
51556377 AAATTACTAAAATACCCTCAATTTGTAAAATTACCAAAATACCCTCGATTTGTAAAATTACCGAA
1 AAATTACTGAAATACCCCCGATTTGTAAAATTACCAAAACACCCTCGATTTGTAAAATTACCAAA
* * *
51556442 ACACCCTCGATTGTGAAATTATCGAAATACCCTTGATTTATA
66 ACACCCTCGATTGTAAAATTATCAAAATACCCTTAATTTATA
* * * *
51556484 AAATTACTGAAATACCCCCGATTTGTGAAATTACCGAAACA-CCTTGATTTGTAAAATTATCAAA
1 AAATTACTGAAATACCCCCGATTTGTAAAATTACCAAAACACCCTCGATTTGTAAAATTACCAAA
* * *
51556548 ATATCCTCGATTTGTAAAATTATCAAAATACCCTTAATTTGTA
66 ACACCCTCGA-TTGTAAAATTATCAAAATACCCTTAATTTATA
* * *
51556591 AAATTACTGAAATACCCCCGATTTGTAAACTTATCAAAATACCCT
1 AAATTACTGAAATACCCCCGATTTGTAAAATTACCAAAACACCCT
51556636 TGTAGTGTAA
Statistics
Matches: 130, Mismatches: 20, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
106 28 0.22
107 99 0.76
108 3 0.02
ACGTcount: A:0.40, C:0.20, G:0.08, T:0.32
Consensus pattern (107 bp):
AAATTACTGAAATACCCCCGATTTGTAAAATTACCAAAACACCCTCGATTTGTAAAATTACCAAA
ACACCCTCGATTGTAAAATTATCAAAATACCCTTAATTTATA
Found at i:51556604 original size:54 final size:54
Alignment explanation
Indices: 51556377--51556662 Score: 346
Period size: 54 Copynumber: 5.3 Consensus size: 54
51556367 TAATAAAGAG
* * * *
51556377 AAATTACTAAAATACCCTCAATTTGTAAAATTACCAAAATACCCTCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTAAAATTATCAAAATACCCTTGATTTGTA
* * * * *
51556431 AAATTACCGAAACACCCTCGA-TTGTGAAATTATCGAAATACCCTTGATTTATA
1 AAATTACTGAAATACCCTCGATTTGTAAAATTATCAAAATACCCTTGATTTGTA
* * * * *
51556484 AAATTACTGAAATACCCCCGATTTGTGAAATTACCGAAACA-CCTTGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTAAAATTATCAAAATACCCTTGATTTGTA
* * *
51556537 AAATTA-TCAAAATATCCTCGATTTGTAAAATTATCAAAATACCCTTAATTTGTA
1 AAATTACT-GAAATACCCTCGATTTGTAAAATTATCAAAATACCCTTGATTTGTA
* * *
51556591 AAATTACTGAAATACCCCCGATTTGTAAACTTATCAAAATACCCTTG-TAGTGTA
1 AAATTACTGAAATACCCTCGATTTGTAAAATTATCAAAATACCCTTGAT-TTGTA
51556645 AAATTACTGAAATACCCT
1 AAATTACTGAAATACCCT
51556663 TGTAGTGTAA
Statistics
Matches: 197, Mismatches: 30, Indels: 10
0.83 0.13 0.04
Matches are distributed among these distances:
52 1 0.01
53 89 0.45
54 106 0.54
55 1 0.01
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.32
Consensus pattern (54 bp):
AAATTACTGAAATACCCTCGATTTGTAAAATTATCAAAATACCCTTGATTTGTA
Found at i:51556663 original size:27 final size:27
Alignment explanation
Indices: 51556587--51556675 Score: 101
Period size: 27 Copynumber: 3.3 Consensus size: 27
51556577 ACCCTTAATT
** *
51556587 TGTAAAATTACTGAAATACCCCCG-ATT
1 TGTAAAATTACTGAAATACCCTTGTA-G
* *
51556614 TGTAAACTTA-TCAAAATACCCTTGTAG
1 TGTAAAATTACT-GAAATACCCTTGTAG
51556641 TGTAAAATTACTGAAATACCCTTGTAG
1 TGTAAAATTACTGAAATACCCTTGTAG
51556668 TGTAAAAT
1 TGTAAAAT
51556676 GACCGACATA
Statistics
Matches: 52, Mismatches: 7, Indels: 6
0.80 0.11 0.09
Matches are distributed among these distances:
26 1 0.02
27 49 0.94
28 2 0.04
ACGTcount: A:0.38, C:0.17, G:0.12, T:0.33
Consensus pattern (27 bp):
TGTAAAATTACTGAAATACCCTTGTAG
Found at i:51556686 original size:27 final size:27
Alignment explanation
Indices: 51556627--51556688 Score: 97
Period size: 27 Copynumber: 2.3 Consensus size: 27
51556617 AAACTTATCA
* *
51556627 AAATACCCTTGTAGTGTAAAATTACTG
1 AAATACCCTTGTAGTGTAAAATGACCG
51556654 AAATACCCTTGTAGTGTAAAATGACCG
1 AAATACCCTTGTAGTGTAAAATGACCG
*
51556681 ACATACCC
1 AAATACCC
51556689 CTATAGGGTA
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.37, C:0.21, G:0.15, T:0.27
Consensus pattern (27 bp):
AAATACCCTTGTAGTGTAAAATGACCG
Found at i:51556699 original size:27 final size:27
Alignment explanation
Indices: 51556627--51556701 Score: 69
Period size: 27 Copynumber: 2.8 Consensus size: 27
51556617 AAACTTATCA
* * * * *
51556627 AAATACCCTTGTAGTGTAAAATTACTG
1 AAATACCCCTATAGGGTAAAATGACCG
* * *
51556654 AAATACCCTTGTAGTGTAAAATGACCG
1 AAATACCCCTATAGGGTAAAATGACCG
*
51556681 ACATACCCCTATAGGGTAAAA
1 AAATACCCCTATAGGGTAAAA
51556702 GGATTATTTT
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 42 1.00
ACGTcount: A:0.39, C:0.19, G:0.16, T:0.27
Consensus pattern (27 bp):
AAATACCCCTATAGGGTAAAATGACCG
Found at i:51558286 original size:21 final size:21
Alignment explanation
Indices: 51558260--51558311 Score: 86
Period size: 21 Copynumber: 2.5 Consensus size: 21
51558250 GGGGTTACAT
51558260 GCCCGTGTGGCTTTGGAACAC
1 GCCCGTGTGGCTTTGGAACAC
*
51558281 GCCCGTGTGGCTTTGGGACAC
1 GCCCGTGTGGCTTTGGAACAC
*
51558302 GCCTGTGTGG
1 GCCCGTGTGG
51558312 GTAGGCTGTA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.10, C:0.27, G:0.38, T:0.25
Consensus pattern (21 bp):
GCCCGTGTGGCTTTGGAACAC
Found at i:51562031 original size:41 final size:40
Alignment explanation
Indices: 51561978--51562147 Score: 161
Period size: 41 Copynumber: 4.2 Consensus size: 40
51561968 AGTCTGACTC
*
51561978 TTAG-CACCGGCTCAAAAGCCCTTCGAGACCAAGCTCGGA
1 TTAGACACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGGA
* * *
51562017 TTAGACTACTGGCTCGAAGGCCCTTCG-GAACTAAG-TCCGG-
1 TTAGAC-ACTGGCTCAAAAGCCCTTCGAG-ACCAAGCT-CGGA
* * *
51562057 TTATGACACTGGCTCTAAAAAGCCCTTCGAAACTAAGTTCGGTTA
1 TTA-GACACTGGCTC--AAAAGCCCTTCGAGACCAAGCTCGG--A
51562102 TTAG-CACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGGA
1 TTAGACACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGGA
51562141 TTTAGAC
1 -TTAGAC
51562148 CCCGATTAGC
Statistics
Matches: 107, Mismatches: 10, Indels: 26
0.75 0.07 0.18
Matches are distributed among these distances:
39 5 0.05
40 18 0.17
41 51 0.48
42 19 0.18
43 10 0.09
44 1 0.01
45 3 0.03
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (40 bp):
TTAGACACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGGA
Found at i:51574242 original size:118 final size:120
Alignment explanation
Indices: 51574059--51574282 Score: 287
Period size: 118 Copynumber: 1.9 Consensus size: 120
51574049 GCTCCTCGTT
* **
51574059 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACATAGCCAGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
*
51574124 AT-TTAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
66 ATATT-GTAACTTAGCACAAA-GCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * **
51574179 CAAATGCCTTCGGG-CTTAGCCAGAAT-TAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCG
1 CAAATGCCTTCGGGACATAGCCAGAATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCG
* * *
51574241 GATATTGTCACTTAGCCCAAAGCCTTCGGGACTTAGCCCGGA
65 GATATTGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGA
51574283 CATCATTCAA
Statistics
Matches: 90, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
117 3 0.03
118 56 0.62
119 17 0.19
120 14 0.16
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (120 bp):
CAAATGCCTTCGGGACATAGCCAGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
ATATTGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:51574282 original size:40 final size:41
Alignment explanation
Indices: 51574059--51574282 Score: 277
Period size: 40 Copynumber: 5.6 Consensus size: 41
51574049 GCTCCTCGTT
* *
51574059 CAAATGCCTTCGGGACATAGCCCGGTTA-TAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATTAGTAACTCGCA
*
51574099 CAAATGCCTTCGGGACTTAACCCGGAT-TTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATTAGTAACTCGCA
*
51574139 CAAATGCCTTCGGGACTTAACCCGGAT-TTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATTAGTAACTCGCA
* *
51574179 CAAATGCCTTCGGG-CTTAG-CCAGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATTAGTAACTCGCA
* * * *
51574217 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCACTTAGCC
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATTAGTAAC-TCGCA
51574258 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
51574283 CATCATTCAA
Statistics
Matches: 164, Mismatches: 12, Indels: 16
0.85 0.06 0.08
Matches are distributed among these distances:
37 2 0.01
38 27 0.16
39 9 0.05
40 113 0.69
41 13 0.08
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (41 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATTAGTAACTCGCA
Found at i:51582413 original size:39 final size:40
Alignment explanation
Indices: 51582256--51582427 Score: 276
Period size: 40 Copynumber: 4.3 Consensus size: 40
51582246 GCTCCTCGTT
* *
51582256 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
51582296 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
51582336 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * *
51582376 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
51582415 CAAATGCCTTCGG
1 CAAATGCCTTCGG
51582428 ATCTTAGTCC
Statistics
Matches: 126, Mismatches: 5, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
39 35 0.28
40 89 0.71
41 2 0.02
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:51582464 original size:79 final size:80
Alignment explanation
Indices: 51582256--51582480 Score: 262
Period size: 80 Copynumber: 2.8 Consensus size: 80
51582246 GCTCCTCGTT
* * * * *
51582256 CAAATGCCTTCGGGACATAGCCCG-GTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
1 CAAATGCCTTCGGGACTTAACCCGAATT-TAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCG
*
51582320 GATTTAGTAACTCGCA
65 GAATTAGTAACTCGCA
* *
51582336 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGCCCGG
1 CAAATGCCTTCGGGACTTAACCCGAATTTAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGG
*
51582400 AATTAGTATCTCGCA
66 AATTAGTAACTCGCA
** * *
51582415 CAAATGCCTTC-GGATCTTAGTCCGAATATT-GTCACTTAGCCCAAA-GCCTTCGGGACTTAGCC
1 CAAATGCCTTCGGGA-CTTAACCCGAAT-TTAGTAAC-TAGCACAAATGCCTTCGGGACTTAGCC
51582477 CGGA
63 CGGA
51582481 CATCATTCAA
Statistics
Matches: 128, Mismatches: 12, Indels: 10
0.85 0.08 0.07
Matches are distributed among these distances:
78 3 0.02
79 55 0.43
80 68 0.53
81 2 0.02
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (80 bp):
CAAATGCCTTCGGGACTTAACCCGAATTTAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGG
AATTAGTAACTCGCA
Found at i:51582464 original size:119 final size:120
Alignment explanation
Indices: 51582256--51582480 Score: 289
Period size: 119 Copynumber: 1.9 Consensus size: 120
51582246 GCTCCTCGTT
* *
51582256 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGA
*
51582321 ATTTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
66 ATTTAGTAACTAGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * **
51582376 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCC
1 CAAATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
* * *
51582438 GAATATT-GTCACTTAGCCCAAA-GCCTTCGGGACTTAGCCCGGA
64 GAAT-TTAGTAAC-TAGCACAAATGCCTTCGGGACTTAACCCGGA
51582481 CATCATTCAA
Statistics
Matches: 91, Mismatches: 10, Indels: 9
0.83 0.09 0.08
Matches are distributed among these distances:
118 4 0.04
119 64 0.70
120 23 0.25
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (120 bp):
CAAATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGA
ATTTAGTAACTAGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:51591950 original size:41 final size:40
Alignment explanation
Indices: 51591900--51592068 Score: 170
Period size: 41 Copynumber: 4.2 Consensus size: 40
51591890 AGTCCGACTC
51591900 TTAG-CACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGGA
1 TTAGACACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGGA
* *
51591939 TTAGACTACTGGCTC-AAGGCCCTTCG-GAACTAAG-TCCGG-
1 TTAGAC-ACTGGCTCAAAAGCCCTTCGAG-ACCAAGCT-CGGA
* * *
51591978 TTATGACACTGGCTCTAAAAAGCCCTTCGAAACTAAGTTCGGTTA
1 TTA-GACACTGGCTC--AAAAGCCCTTCGAGACCAAGCTCGG--A
51592023 TTAG-CACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGGA
1 TTAGACACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGGA
51592062 TTTAGAC
1 -TTAGAC
51592069 CCCGATTAGC
Statistics
Matches: 108, Mismatches: 7, Indels: 28
0.76 0.05 0.20
Matches are distributed among these distances:
39 18 0.17
40 26 0.24
41 31 0.29
42 19 0.18
43 10 0.09
44 1 0.01
45 3 0.03
ACGTcount: A:0.28, C:0.27, G:0.22, T:0.23
Consensus pattern (40 bp):
TTAGACACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGGA
Found at i:51592006 original size:42 final size:41
Alignment explanation
Indices: 51591902--51592048 Score: 160
Period size: 42 Copynumber: 3.6 Consensus size: 41
51591892 TCCGACTCTT
* *
51591902 AGCACTGGCTCAAAAGCCCTTCGAGACCAAG-CTCGGATTA-G
1 AGCACTGGCTCAAAAGCCCTTCGAAACTAAGTC-CGG-TTATG
* *
51591943 A-CTACTGGCTC-AAGGCCCTTCGGAACTAAGTCCGGTTATG
1 AGC-ACTGGCTCAAAAGCCCTTCGAAACTAAGTCCGGTTATG
* *
51591983 A-CACTGGCTCTAAAAAGCCCTTCGAAACTAAGTTCGGTTATT
1 AGCACTGGCTC--AAAAGCCCTTCGAAACTAAGTCCGGTTATG
51592025 AGCACTGGCTCAAAAGCCCTTCGA
1 AGCACTGGCTCAAAAGCCCTTCGA
51592049 GACCAAGCTC
Statistics
Matches: 91, Mismatches: 8, Indels: 14
0.81 0.07 0.12
Matches are distributed among these distances:
39 11 0.12
40 22 0.24
41 23 0.25
42 26 0.29
43 9 0.10
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (41 bp):
AGCACTGGCTCAAAAGCCCTTCGAAACTAAGTCCGGTTATG
Done.