Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100714657
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 3970000 characters in sequence are not A, C, G, or T
File 174 of 318
Found at i:54842847 original size:18 final size:18
Alignment explanation
Indices: 54842826--54843050 Score: 158
Period size: 18 Copynumber: 12.7 Consensus size: 18
54842816 ATTTGATATC
*
54842826 ATAATTTACATAACTTAT
1 ATAACTTACATAACTTAT
* * *
54842844 ATAACATATATAACTTAC
1 ATAACTTACATAACTTAT
* * *
54842862 ATAACTTATATAACATAC
1 ATAACTTACATAACTTAT
*
54842880 ATAACTTATATAACTTAT
1 ATAACTTACATAACTTAT
* *
54842898 ATAACTTAGATAA-ATAT
1 ATAACTTACATAACTTAT
*
54842915 ATAACTTACATAACTTAC
1 ATAACTTACATAACTTAT
*
54842933 ATAA--TACATAA-ATAT
1 ATAACTTACATAACTTAT
** * *
54842948 AT-TTTATATCATAATTTAC
1 ATAACT-TA-CATAACTTAT
54842967 ATAACTTACATAACTTAT
1 ATAACTTACATAACTTAT
* *
54842985 ATAACTTAGATAA-ATAT
1 ATAACTTACATAACTTAT
* *
54843002 ATAATTTACATAA-ATAT
1 ATAACTTACATAACTTAT
* * * *
54843019 ATATCATATCATAAATTAC
1 ATAACTTA-CATAACTTAT
54843038 ATAACTTACATAA
1 ATAACTTACATAA
54843051 TACTTAAATA
Statistics
Matches: 165, Mismatches: 33, Indels: 18
0.76 0.15 0.08
Matches are distributed among these distances:
15 4 0.02
16 7 0.04
17 40 0.24
18 99 0.60
19 14 0.08
20 1 0.01
ACGTcount: A:0.48, C:0.12, G:0.01, T:0.38
Consensus pattern (18 bp):
ATAACTTACATAACTTAT
Found at i:54843038 original size:114 final size:114
Alignment explanation
Indices: 54842853--54843074 Score: 304
Period size: 114 Copynumber: 1.9 Consensus size: 114
54842843 TATAACATAT
* * *
54842853 ATAACTTACATAACTTATATAACATACATAACTTATATAACTTATATAACTTAGATAAATATATA
1 ATAACTTACATAACTTATATAACATACATAACATATATAACTTACATAAATTAGATAAATATATA
* * *
54842918 ACTTACATAACTTACATAATACATAAATATATTTTATATCATAATTTAC
66 AATTACATAACTTACATAATACATAAATATATATCATATCATAATTTAC
* * * * *
54842967 ATAACTTACATAACTTATATAACTTAGATAA-ATATATAATTTACATAAA-TATATATCATATCA
1 ATAACTTACATAACTTATATAACATACATAACATATATAACTTACATAAATTAGATA-AATAT-A
*
54843030 TAAATTACATAACTTACATAATACTTAAATATATATCATATCATA
64 TAAATTACATAACTTACATAATACATAAATATATATCATATCATA
54843075 CATAACTAGT
Statistics
Matches: 94, Mismatches: 12, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
112 5 0.05
113 18 0.19
114 71 0.76
ACGTcount: A:0.48, C:0.13, G:0.01, T:0.38
Consensus pattern (114 bp):
ATAACTTACATAACTTATATAACATACATAACATATATAACTTACATAAATTAGATAAATATATA
AATTACATAACTTACATAATACATAAATATATATCATATCATAATTTAC
Found at i:54844932 original size:12 final size:12
Alignment explanation
Indices: 54844915--54844940 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
54844905 AAGATCGAGG
54844915 GATGAATCTGAT
1 GATGAATCTGAT
54844927 GATGAATCTGAT
1 GATGAATCTGAT
54844939 GA
1 GA
54844941 AGAGGATGAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.35, C:0.08, G:0.27, T:0.31
Consensus pattern (12 bp):
GATGAATCTGAT
Found at i:54848257 original size:13 final size:14
Alignment explanation
Indices: 54848241--54848269 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
54848231 TTCTAAATAT
54848241 TTATAA-TGTTTAA
1 TTATAATTGTTTAA
54848254 TTATAATTGTTTAA
1 TTATAATTGTTTAA
54848268 TT
1 TT
54848270 CAATTCATCA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 6 0.40
14 9 0.60
ACGTcount: A:0.34, C:0.00, G:0.07, T:0.59
Consensus pattern (14 bp):
TTATAATTGTTTAA
Found at i:54849193 original size:42 final size:42
Alignment explanation
Indices: 54849095--54849558 Score: 658
Period size: 42 Copynumber: 11.0 Consensus size: 42
54849085 TTTGTGGGAA
54849095 AAACGCCGCTAAAGGCCATGACTTTTAGCGGCGCTTTTTTTCC
1 AAACGCCGCTAAAGGCCATGACTTTTAGCGGCGCTTTTTTT-C
* * * *
54849138 TAATGCCGTTAAAGGCCATGCCTTTTAGCGGCGCTTTTTTTC
1 AAACGCCGCTAAAGGCCATGACTTTTAGCGGCGCTTTTTTTC
* **
54849180 AAACGCTGCTAAAGGCCATGACTTTTAGCGGTACTTTTTTTCC
1 AAACGCCGCTAAAGGCCATGACTTTTAGCGGCGCTTTTTTT-C
* * *
54849223 AAACGCTGCTAAAGGCCGTGACTTTTAGCGGCGCTTTTTTCC
1 AAACGCCGCTAAAGGCCATGACTTTTAGCGGCGCTTTTTTTC
* ** *
54849265 AAACGCCGCTAAAGGCCGTGACTTTTAGCGGCGCTTTGCTCC
1 AAACGCCGCTAAAGGCCATGACTTTTAGCGGCGCTTTTTTTC
* *
54849307 AAACGCCGCTAAAGGCCGTGACTTTTAGCGGCACTTTTTTTCC
1 AAACGCCGCTAAAGGCCATGACTTTTAGCGGCGCTTTTTTT-C
* *
54849350 AAACGCCGCTAAAGGACATGACTTTTAGCGGTGCTTTTTTTCC
1 AAACGCCGCTAAAGGCCATGACTTTTAGCGGCGCTTTTTTT-C
* ** *
54849393 AAACGCCGTTAAAGGCCATGACTTTTAGCGGCGCTTTGCTCC
1 AAACGCCGCTAAAGGCCATGACTTTTAGCGGCGCTTTTTTTC
*
54849435 AAACGCTGCTAAAGGCCATGACTTTTAGCGGCGCTTTTTTTC
1 AAACGCCGCTAAAGGCCATGACTTTTAGCGGCGCTTTTTTTC
* *
54849477 AAACGCCACTAAAGGACATGACTTTTAGCGGCGCTTTTTTTC
1 AAACGCCGCTAAAGGCCATGACTTTTAGCGGCGCTTTTTTTC
*
54849519 AAACGCCGCTAAAGGCCATGACTTTTAGCTGCGCTTTTTT
1 AAACGCCGCTAAAGGCCATGACTTTTAGCGGCGCTTTTTT
54849559 GTAATAAACG
Statistics
Matches: 376, Mismatches: 43, Indels: 5
0.89 0.10 0.01
Matches are distributed among these distances:
42 226 0.60
43 150 0.40
ACGTcount: A:0.21, C:0.26, G:0.22, T:0.31
Consensus pattern (42 bp):
AAACGCCGCTAAAGGCCATGACTTTTAGCGGCGCTTTTTTTC
Found at i:54849220 original size:85 final size:85
Alignment explanation
Indices: 54849095--54849558 Score: 680
Period size: 85 Copynumber: 5.5 Consensus size: 85
54849085 TTTGTGGGAA
* * * *
54849095 AAACGCCGCTAAAGGCCATGACTTTTAGCGGCGCTTTTTTTCCTAATGCCGTTAAAGGCCATGCC
1 AAACGCCGCTAAAGGCCATGACTTTTAGCGGCGCTTTTTTTCCAAACGCCGCTAAAGGCCATGAC
54849160 TTTTAGCGGCGCTTTTTTTC
66 TTTTAGCGGCGCTTTTTTTC
* ** * *
54849180 AAACGCTGCTAAAGGCCATGACTTTTAGCGGTACTTTTTTTCCAAACGCTGCTAAAGGCCGTGAC
1 AAACGCCGCTAAAGGCCATGACTTTTAGCGGCGCTTTTTTTCCAAACGCCGCTAAAGGCCATGAC
*
54849245 TTTTAGCGGCGCTTTTTTCC
66 TTTTAGCGGCGCTTTTTTTC
* ** *
54849265 AAACGCCGCTAAAGGCCGTGACTTTTAGCGGCGC-TTTGCTCCAAACGCCGCTAAAGGCCGTGAC
1 AAACGCCGCTAAAGGCCATGACTTTTAGCGGCGCTTTTTTTCCAAACGCCGCTAAAGGCCATGAC
*
54849329 TTTTAGCGGCACTTTTTTTCC
66 TTTTAGCGGCGCTTTTTTT-C
* * *
54849350 AAACGCCGCTAAAGGACATGACTTTTAGCGGTGCTTTTTTTCCAAACGCCGTTAAAGGCCATGAC
1 AAACGCCGCTAAAGGCCATGACTTTTAGCGGCGCTTTTTTTCCAAACGCCGCTAAAGGCCATGAC
** *
54849415 TTTTAGCGGCGCTTTGCTCC
66 TTTTAGCGGCGCTTTTTTTC
* * *
54849435 AAACGCTGCTAAAGGCCATGACTTTTAGCGGCGCTTTTTTT-CAAACGCCACTAAAGGACATGAC
1 AAACGCCGCTAAAGGCCATGACTTTTAGCGGCGCTTTTTTTCCAAACGCCGCTAAAGGCCATGAC
54849499 TTTTAGCGGCGCTTTTTTTC
66 TTTTAGCGGCGCTTTTTTTC
*
54849519 AAACGCCGCTAAAGGCCATGACTTTTAGCTGCGCTTTTTT
1 AAACGCCGCTAAAGGCCATGACTTTTAGCGGCGCTTTTTT
54849559 GTAATAAACG
Statistics
Matches: 336, Mismatches: 41, Indels: 5
0.88 0.11 0.01
Matches are distributed among these distances:
84 119 0.35
85 176 0.52
86 41 0.12
ACGTcount: A:0.21, C:0.26, G:0.22, T:0.31
Consensus pattern (85 bp):
AAACGCCGCTAAAGGCCATGACTTTTAGCGGCGCTTTTTTTCCAAACGCCGCTAAAGGCCATGAC
TTTTAGCGGCGCTTTTTTTC
Found at i:54854973 original size:6 final size:6
Alignment explanation
Indices: 54854962--54855118 Score: 137
Period size: 6 Copynumber: 25.8 Consensus size: 6
54854952 AACCAAAATG
* *
54854962 AGAATC AGAATC AGAATC AGTAA-C AGAATT AGAATC AGAATC A-ATATT
1 AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGA-ATC
* * *
54855010 AGTAA-C AGAATC AGAATC AGAATC AGTATT ATGTGA-C AGAATC AGAATC
1 AG-AATC AGAATC AGAATC AGAATC AGAATC A-G-AATC AGAATC AGAATC
* *
54855059 AGAATC AGTAA-C AGAATC AGAATC AGAATC AGAATT ACGTGA-C AGAATC
1 AGAATC AG-AATC AGAATC AGAATC AGAATC AGAATC A-G-AATC AGAATC
54855108 AGAATC AGAAT
1 AGAATC AGAAT
54855119 GTGAATGCAA
Statistics
Matches: 124, Mismatches: 13, Indels: 28
0.75 0.08 0.17
Matches are distributed among these distances:
5 9 0.07
6 103 0.83
7 9 0.07
8 3 0.02
ACGTcount: A:0.48, C:0.14, G:0.17, T:0.21
Consensus pattern (6 bp):
AGAATC
Found at i:54854977 original size:30 final size:29
Alignment explanation
Indices: 54854941--54855118 Score: 170
Period size: 30 Copynumber: 6.1 Consensus size: 29
54854931 AAGAAACATT
* * *
54854941 ATCAGAATTGGAACCAAAATGAGAATCAGA
1 ATCAGAATTGTAA-CAGAATCAGAATCAGA
* *
54854971 ATCAGAATCAGTAACAGAATTAGAATCAGA
1 ATCAGAAT-TGTAACAGAATCAGAATCAGA
54855001 ATCA-ATATTAGTAACAGAATCAGAATCAGA
1 ATCAGA-ATT-GTAACAGAATCAGAATCAGA
* *
54855031 ATCAGTATTATGTGACAGAATCAGAATCAGA
1 ATCAG-AAT-TGTAACAGAATCAGAATCAGA
54855062 ATC---A--GTAACAGAATCAGAATCAGA
1 ATCAGAATTGTAACAGAATCAGAATCAGA
*
54855086 ATCAGAATTACGTGACAGAATCAGAATCAGA
1 ATCAGAATT--GTAACAGAATCAGAATCAGA
54855117 AT
1 AT
54855119 GTGAATGCAA
Statistics
Matches: 124, Mismatches: 11, Indels: 25
0.77 0.07 0.16
Matches are distributed among these distances:
24 22 0.18
27 1 0.01
29 1 0.01
30 51 0.41
31 47 0.38
32 2 0.02
ACGTcount: A:0.48, C:0.14, G:0.17, T:0.21
Consensus pattern (29 bp):
ATCAGAATTGTAACAGAATCAGAATCAGA
Found at i:54855073 original size:55 final size:54
Alignment explanation
Indices: 54854962--54855118 Score: 210
Period size: 55 Copynumber: 2.9 Consensus size: 54
54854952 AACCAAAATG
** * * *
54854962 AGAATCAGAATCAGAATCAGTAACAG-AATTAGAATCAGAATCA-ATATTAGTAAC
1 AGAATCAGAATCAGAATCAGTATTAGTGA-CAGAATCAGAATCAGA-ATCAGTAAC
54855016 AGAATCAGAATCAGAATCAGTATTATGTGACAGAATCAGAATCAGAATCAGTAAC
1 AGAATCAGAATCAGAATCAGTATTA-GTGACAGAATCAGAATCAGAATCAGTAAC
*
54855071 AGAATCAGAATCAGAATCAGAATTACGTGACAGAATCAGAATCAGAAT
1 AGAATCAGAATCAGAATCAGTATTA-GTGACAGAATCAGAATCAGAAT
54855119 GTGAATGCAA
Statistics
Matches: 93, Mismatches: 7, Indels: 5
0.89 0.07 0.05
Matches are distributed among these distances:
54 23 0.25
55 68 0.73
56 2 0.02
ACGTcount: A:0.48, C:0.14, G:0.17, T:0.21
Consensus pattern (54 bp):
AGAATCAGAATCAGAATCAGTATTAGTGACAGAATCAGAATCAGAATCAGTAAC
Found at i:54855273 original size:27 final size:26
Alignment explanation
Indices: 54855236--54855301 Score: 78
Period size: 27 Copynumber: 2.5 Consensus size: 26
54855226 AGCATGGCTG
*
54855236 CCAGAACAGATATCGTGACAGAGTCA
1 CCAGAACAGATATCGTGACAGAGCCA
* **
54855262 CCAGATACAGATATTGTGGTAGAGCCA
1 CCAGA-ACAGATATCGTGACAGAGCCA
54855289 CCAGAATCAGATA
1 CCAGAA-CAGATA
54855302 ATGTGGCAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
26 6 0.18
27 28 0.82
ACGTcount: A:0.38, C:0.21, G:0.23, T:0.18
Consensus pattern (26 bp):
CCAGAACAGATATCGTGACAGAGCCA
Found at i:54855306 original size:27 final size:27
Alignment explanation
Indices: 54855255--54855307 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
54855245 ATATCGTGAC
* *
54855255 AGAGTCACCAGATACAGATATTGTGGT
1 AGAGCCACCAGATACAGATAATGTGGT
54855282 AGAGCCACCAGA-ATCAGATAATGTGG
1 AGAGCCACCAGATA-CAGATAATGTGG
54855308 CAAACCCACC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 1 0.04
27 22 0.96
ACGTcount: A:0.36, C:0.17, G:0.26, T:0.21
Consensus pattern (27 bp):
AGAGCCACCAGATACAGATAATGTGGT
Found at i:54855316 original size:27 final size:27
Alignment explanation
Indices: 54855260--54855317 Score: 64
Period size: 27 Copynumber: 2.1 Consensus size: 27
54855250 GTGACAGAGT
* * * *
54855260 CACCAGATACAGATATTGTGGTAGAGC
1 CACCAGATACAGATAATGTGGCAAACC
54855287 CACCAGA-ATCAGATAATGTGGCAAACC
1 CACCAGATA-CAGATAATGTGGCAAACC
54855314 CACC
1 CACC
54855318 TAATAGAATA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
26 1 0.04
27 25 0.96
ACGTcount: A:0.36, C:0.26, G:0.21, T:0.17
Consensus pattern (27 bp):
CACCAGATACAGATAATGTGGCAAACC
Found at i:54855522 original size:22 final size:22
Alignment explanation
Indices: 54855474--54855532 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
54855464 GTAAATACGT
*
54855474 TTGGCACGAAGCCATAGTCAAG
1 TTGGCACAAAGCCATAGTCAAG
* * * *
54855496 ATGGCACAAAGCCATATTTAGG
1 TTGGCACAAAGCCATAGTCAAG
*
54855518 TTGGCACAGAGCCAT
1 TTGGCACAAAGCCAT
54855533 TAATAACGGG
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.32, C:0.22, G:0.25, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAGTCAAG
Found at i:54855699 original size:27 final size:26
Alignment explanation
Indices: 54855620--54855702 Score: 112
Period size: 27 Copynumber: 3.1 Consensus size: 26
54855610 TCGATCGGTC
* * *
54855620 AACAGATATTGTGACAGAGTCACCAA
1 AACAGATATTGTGGCAGAGCCACCAG
54855646 ATACAGATATTGTGGCAGAGCCACCAG
1 A-ACAGATATTGTGGCAGAGCCACCAG
*
54855673 AACAGATATTTGTGGCATAGCCACCAG
1 AACAGATA-TTGTGGCAGAGCCACCAG
54855700 AAC
1 AAC
54855703 GCTTCCTCCG
Statistics
Matches: 51, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
26 8 0.16
27 43 0.84
ACGTcount: A:0.37, C:0.22, G:0.22, T:0.19
Consensus pattern (26 bp):
AACAGATATTGTGGCAGAGCCACCAG
Found at i:54856096 original size:27 final size:27
Alignment explanation
Indices: 54855865--54856088 Score: 277
Period size: 27 Copynumber: 8.3 Consensus size: 27
54855855 TTGCCCACAA
*
54855865 GGGTATCTCGGTAATTCTACCCTACAG
1 GGGTATTTCGGTAATTCTACCCTACAG
* * * *
54855892 GAGTATTTCGGTATTTCTACCTTACAA
1 GGGTATTTCGGTAATTCTACCCTACAG
*
54855919 GGGTATCTCGGTAATTCTACCCTACAG
1 GGGTATTTCGGTAATTCTACCCTACAG
* * * * *
54855946 GAGTATTTCGATATTTCTACCTTACAA
1 GGGTATTTCGGTAATTCTACCCTACAG
*
54855973 GGGTATTTCGATAATTCTACCCTACAG
1 GGGTATTTCGGTAATTCTACCCTACAG
* * * *
54856000 GGGTATTTTGGTAATTCTATCCTATAA
1 GGGTATTTCGGTAATTCTACCCTACAG
* *
54856027 GGGTATTTCAGTAATTCTACCCTATAG
1 GGGTATTTCGGTAATTCTACCCTACAG
*
54856054 GGGTATTTCGGAAATTCTACCCTACAG
1 GGGTATTTCGGTAATTCTACCCTACAG
54856081 GGGTATTT
1 GGGTATTT
54856089 TAGTAATTTC
Statistics
Matches: 165, Mismatches: 32, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 165 1.00
ACGTcount: A:0.25, C:0.20, G:0.19, T:0.36
Consensus pattern (27 bp):
GGGTATTTCGGTAATTCTACCCTACAG
Found at i:54856131 original size:27 final size:27
Alignment explanation
Indices: 54856101--54856698 Score: 695
Period size: 27 Copynumber: 22.1 Consensus size: 27
54856091 GTAATTTCAC
*
54856101 AATCAAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* * *
54856128 AATCGAGGGTAAAACGATAATTTTGCA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
54856155 AA-CTGAGGGTAAACCAGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
* * * **
54856182 AATCAAGGGTAAAATGGTAATTTTACA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
54856209 AATCGAGGGTAAAACAGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
54856236 AATCGAGGGTAAAACAGTAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
54856263 AA-CTGAGGGTAAAACGGTAATTCTATA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
* ** *
54856290 AATCAAGGGTAAAATAGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
** * *
54856317 AATTAAGGGTAAAACGGTAATTTTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* * **
54856344 AATCGAGGCTAAAACGGTAATTTTACA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
54856371 AATCGAGGATAAAATGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
54856398 AA-CAGAGGGTAAAACGGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
54856425 AA-CTGAGGGTAAAACGGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
54856452 AATCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
54856479 AA-CTGAGGGTAAAACGGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
* **
54856506 AATCGAGGGTAAAACGGTAATTTTAAA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
54856533 AATCGAGGGTAAAACGATAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
54856560 AATCGAGGGTAAAACGATAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* * *
54856587 AA-CTAAGGGTAAAATGATAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
* * * **
54856614 AATCGAAGGTAAAATGGTAATTTTAAA
1 AATCGAGGGTAAAACGGTAATTCTGTA
54856641 AATCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
54856668 AATCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
54856695 AATC
1 AATC
54856699 AAGAGTACTT
Statistics
Matches: 496, Mismatches: 65, Indels: 20
0.85 0.11 0.03
Matches are distributed among these distances:
26 5 0.01
27 486 0.98
28 5 0.01
ACGTcount: A:0.42, C:0.10, G:0.21, T:0.27
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTCTGTA
Found at i:54856245 original size:108 final size:108
Alignment explanation
Indices: 54856101--54856696 Score: 772
Period size: 108 Copynumber: 5.5 Consensus size: 108
54856091 GTAATTTCAC
* * *
54856101 AATCAAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGATAATTTTGCAAACTGAGGGTA
1 AATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGATAATTTTGTAAACTGAGGGTA
* * *
54856166 AACCAGTAATTCTGTAAATCAAGGGTAAAATGGTAATTTTACA
66 AAACGGTAATTCTGTAAATCAAGGGTAAAATGGTAATTTTAAA
*
54856209 AATCGAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAAC-AGTAATTTTGTAAACTGAGGGT
1 AATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGA-TAATTTTGTAAACTGAGGGT
* * * *
54856273 AAAACGGTAATTCTATAAATCAAGGGTAAAATAGTAATTCTATA
65 AAAACGGTAATTCTGTAAATCAAGGGTAAAATGGTAATTTTAAA
** * * * ** *
54856317 AATTAAGGGTAAAACGGTAATTTTATAAATCGAGGCTAAAACGGTAATTTTACAAA-TCGAGGAT
1 AATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGATAATTTTGTAAACT-GAGGGT
* *
54856381 AAAATGGTAATTCTGTAAA-CAGAGGGTAAAACGGTAATTCTGT-AA
65 AAAACGGTAATTCTGTAAATCA-AGGGTAAAATGGTAATT-T-TAAA
* * * *
54856426 ACT-GAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAACTGAGGGTA
1 AATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGATAATTTTGTAAACTGAGGGTA
* *
54856490 AAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTAAA
66 AAACGGTAATTCTGTAAATCAAGGGTAAAATGGTAATTTTAAA
* * * *
54856533 AATCGAGGGTAAAACGATAATTCTATAAATCGAGGGTAAAACGATAATTCTATAAACTAAGGGTA
1 AATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGATAATTTTGTAAACTGAGGGTA
* *
54856598 AAATGATAATTCTGTAAATCGAA-GGTAAAATGGTAATTTTAAA
66 AAACGGTAATTCTGTAAATC-AAGGGTAAAATGGTAATTTTAAA
* * *
54856641 AATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAA
1 AATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGATAATTTTGTAAA
54856697 TCAAGAGTAC
Statistics
Matches: 427, Mismatches: 50, Indels: 22
0.86 0.10 0.04
Matches are distributed among these distances:
106 1 0.00
107 9 0.02
108 410 0.96
109 6 0.01
110 1 0.00
ACGTcount: A:0.42, C:0.10, G:0.21, T:0.27
Consensus pattern (108 bp):
AATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGATAATTTTGTAAACTGAGGGTA
AAACGGTAATTCTGTAAATCAAGGGTAAAATGGTAATTTTAAA
Found at i:54858604 original size:30 final size:30
Alignment explanation
Indices: 54858568--54858722 Score: 155
Period size: 30 Copynumber: 5.3 Consensus size: 30
54858558 AAGAAACATT
*
54858568 ATCAGAATT-GGAACCAAAATGAGAATCAGA
1 ATCAGAATTAGGAA-CAAAATCAGAATCAGA
* * *
54858598 ATCAGAATCAGTAACAGAATCAGAATCAGA
1 ATCAGAATTAGGAACAAAATCAGAATCAGA
*
54858628 ATCA-ATATTAGTAACAAAATCAGAATCAGA
1 ATCAGA-ATTAGGAACAAAATCAGAATCAGA
* *
54858658 ATCAGAATTAGGTGACAGAATCAGAATCAGA
1 ATCAGAATTAGG-AACAAAATCAGAATCAGA
*
54858689 ATCAG---T---AACAGAATCAGAATCAGA
1 ATCAGAATTAGGAACAAAATCAGAATCAGA
54858713 ATCAGAATTA
1 ATCAGAATTA
54858723 CGTGACAGAA
Statistics
Matches: 107, Mismatches: 10, Indels: 18
0.79 0.07 0.13
Matches are distributed among these distances:
24 22 0.21
27 1 0.01
28 1 0.01
29 1 0.01
30 57 0.53
31 25 0.23
ACGTcount: A:0.50, C:0.14, G:0.17, T:0.19
Consensus pattern (30 bp):
ATCAGAATTAGGAACAAAATCAGAATCAGA
Found at i:54858704 original size:55 final size:55
Alignment explanation
Indices: 54858582--54858745 Score: 204
Period size: 55 Copynumber: 2.9 Consensus size: 55
54858572 GAATTGGAAC
* * *
54858582 CAAAATGAGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAATATTAGTAA
1 CAAAATCAGAATCAGAATCAGAATTAGTGACAGAATCAGAATCAGAATC---A--AGTAA
54858642 CAAAATCAGAATCAGAATCAGAATTAGGTGACAGAATCAGAATCAGAATC-AGTAA
1 CAAAATCAGAATCAGAATCAGAATTA-GTGACAGAATCAGAATCAGAATCAAGTAA
* * *
54858697 CAGAATCAGAATCAGAATCAGAATTACGTGACAGAATTAGAAACAGAAT
1 CAAAATCAGAATCAGAATCAGAATTA-GTGACAGAATCAGAATCAGAAT
54858746 GTGAATGCAA
Statistics
Matches: 96, Mismatches: 7, Indels: 7
0.87 0.06 0.06
Matches are distributed among these distances:
55 50 0.52
60 24 0.25
61 22 0.23
ACGTcount: A:0.50, C:0.14, G:0.17, T:0.19
Consensus pattern (55 bp):
CAAAATCAGAATCAGAATCAGAATTAGTGACAGAATCAGAATCAGAATCAAGTAA
Found at i:54858738 original size:6 final size:6
Alignment explanation
Indices: 54858589--54858720 Score: 139
Period size: 6 Copynumber: 21.8 Consensus size: 6
54858579 AACCAAAATG
*
54858589 AGAATC AGAATC AGAATC AGTAA-C AGAATC AGAATC AGAATC A-ATATT
1 AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGA-ATC
* * *
54858637 AGTAA-C AAAATC AGAATC AGAATC AGAATT AG-GTGAC AGAATC AGAATC
1 AG-AATC AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC
54858686 AGAATC AGTAA-C AGAATC AGAATC AGAATC AGAAT
1 AGAATC AG-AATC AGAATC AGAATC AGAATC AGAAT
54858721 TACGTGACAG
Statistics
Matches: 107, Mismatches: 8, Indels: 22
0.78 0.06 0.16
Matches are distributed among these distances:
5 8 0.07
6 90 0.84
7 7 0.07
8 2 0.02
ACGTcount: A:0.50, C:0.14, G:0.17, T:0.19
Consensus pattern (6 bp):
AGAATC
Found at i:54858900 original size:27 final size:26
Alignment explanation
Indices: 54858863--54858921 Score: 82
Period size: 27 Copynumber: 2.2 Consensus size: 26
54858853 AGCATGGCTG
*
54858863 CCAGAACAGATATCGTGACAGAGTCA
1 CCAGAACAGATATCGTGACAGAGCCA
* *
54858889 CCAGATACAGATATTGTGGCAGAGCCA
1 CCAGA-ACAGATATCGTGACAGAGCCA
54858916 CCAGAA
1 CCAGAA
54858922 TCAAATAATG
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
26 6 0.21
27 23 0.79
ACGTcount: A:0.37, C:0.24, G:0.24, T:0.15
Consensus pattern (26 bp):
CCAGAACAGATATCGTGACAGAGCCA
Found at i:54858933 original size:27 final size:27
Alignment explanation
Indices: 54858881--54858936 Score: 69
Period size: 27 Copynumber: 2.1 Consensus size: 27
54858871 GATATCGTGA
* * *
54858881 CAGAGTCACCAGATACAGATATTGTGG
1 CAGAGCCACCAGATACAAATAATGTGG
54858908 CAGAGCCACCAGA-ATCAAATAATGTGG
1 CAGAGCCACCAGATA-CAAATAATGTGG
54858935 CA
1 CA
54858937 AACCCACCTA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
26 1 0.04
27 24 0.96
ACGTcount: A:0.38, C:0.21, G:0.23, T:0.18
Consensus pattern (27 bp):
CAGAGCCACCAGATACAAATAATGTGG
Found at i:54859149 original size:22 final size:22
Alignment explanation
Indices: 54859101--54859159 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
54859091 GTAAATACGT
*
54859101 TTGGCACGAAGCCATAGTCAAG
1 TTGGCACAAAGCCATAGTCAAG
* * * *
54859123 ATGGCACAAAGCCATATTTAGG
1 TTGGCACAAAGCCATAGTCAAG
*
54859145 TTGGCACAGAGCCAT
1 TTGGCACAAAGCCAT
54859160 TAATAACGGG
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.32, C:0.22, G:0.25, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAGTCAAG
Found at i:54859326 original size:27 final size:26
Alignment explanation
Indices: 54859247--54859329 Score: 112
Period size: 27 Copynumber: 3.1 Consensus size: 26
54859237 TCGATCGGTC
* * *
54859247 AACAGATATTGTGACAGAGTCACCAA
1 AACAGATATTGTGGCAGAGCCACCAG
54859273 ATACAGATATTGTGGCAGAGCCACCAG
1 A-ACAGATATTGTGGCAGAGCCACCAG
*
54859300 AACAGATATTTGTGGCATAGCCACCAG
1 AACAGATA-TTGTGGCAGAGCCACCAG
54859327 AAC
1 AAC
54859330 GCTTCCTCCG
Statistics
Matches: 51, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
26 8 0.16
27 43 0.84
ACGTcount: A:0.37, C:0.22, G:0.22, T:0.19
Consensus pattern (26 bp):
AACAGATATTGTGGCAGAGCCACCAG
Found at i:54859558 original size:27 final size:27
Alignment explanation
Indices: 54859528--54859696 Score: 169
Period size: 27 Copynumber: 6.3 Consensus size: 27
54859518 GGGACAAAAT
* *
54859528 GGTAATTTTA-CCTCACAAGGGTATCTC
1 GGTAATTCTACCCT-ACAAGGGTATTTC
*
54859555 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
54859582 GATAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
54859609 GGTAATTCTATCCTATAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * * *
54859636 AGTAATTCTACCCTATAGGGGTATTTA
1 GGTAATTCTACCCTACAAGGGTATTTC
*** *
54859663 AAAAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
54859690 AGTAATT
1 GGTAATT
54859697 TCACAATCAA
Statistics
Matches: 119, Mismatches: 22, Indels: 2
0.83 0.15 0.01
Matches are distributed among these distances:
27 116 0.97
28 3 0.03
ACGTcount: A:0.28, C:0.18, G:0.18, T:0.36
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:54859632 original size:81 final size:81
Alignment explanation
Indices: 54859527--54859688 Score: 218
Period size: 81 Copynumber: 2.0 Consensus size: 81
54859517 AGGGACAAAA
* * * ** *
54859527 TGGTAATTTTACCTCACAAGGGTATCTCGGTATTTCTACCCTACAAGGGTATTTCGATAATTCTA
1 TGGTAATTCTACCTCACAAGGGTATCTCAGTAATTCTACCCTACAAGGGTATTTAAAAAATTCTA
54859592 CCCTACAGGGGTATTT
66 CCCTACAGGGGTATTT
* * * *
54859608 TGGTAATTCTATCCT-ATAAGGGTATTTCAGTAATTCTACCCTATAGGGGTATTTAAAAAATTCT
1 TGGTAATTCTA-CCTCACAAGGGTATCTCAGTAATTCTACCCTACAAGGGTATTTAAAAAATTCT
54859672 ACCCTACAGGGGTATTT
65 ACCCTACAGGGGTATTT
54859689 CAGTAATTTC
Statistics
Matches: 70, Mismatches: 10, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
81 67 0.96
82 3 0.04
ACGTcount: A:0.27, C:0.19, G:0.18, T:0.36
Consensus pattern (81 bp):
TGGTAATTCTACCTCACAAGGGTATCTCAGTAATTCTACCCTACAAGGGTATTTAAAAAATTCTA
CCCTACAGGGGTATTT
Found at i:54859690 original size:54 final size:54
Alignment explanation
Indices: 54859560--54859696 Score: 186
Period size: 54 Copynumber: 2.5 Consensus size: 54
54859550 ATCTCGGTAT
****
54859560 TTCTACCCTACAAGGGTATTTC-GATAATTCTACCCTACAGGGGTATTTTGGTAA
1 TTCTACCCTACAAGGGTATTTCAG-TAATTCTACCCTACAGGGGTATTTAAAAAA
* * *
54859614 TTCTATCCTATAAGGGTATTTCAGTAATTCTACCCTATAGGGGTATTTAAAAAA
1 TTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTAAAAAA
*
54859668 TTCTACCCTACAGGGGTATTTCAGTAATT
1 TTCTACCCTACAAGGGTATTTCAGTAATT
54859697 TCACAATCAA
Statistics
Matches: 72, Mismatches: 10, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
54 71 0.99
55 1 0.01
ACGTcount: A:0.28, C:0.18, G:0.17, T:0.36
Consensus pattern (54 bp):
TTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTAAAAAA
Found at i:54859731 original size:27 final size:27
Alignment explanation
Indices: 54859701--54860381 Score: 775
Period size: 27 Copynumber: 25.3 Consensus size: 27
54859691 GTAATTTCAC
* *
54859701 AATCAAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
54859728 AATCGAGGGTAAAACGATAATT-TGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
54859754 AA-CTGAGGGT-AAACTAGTAATTCTGCA
1 AATC-GAGGGTAAAAC-GGTAATTCTGTA
* * **
54859781 AATCAAGGGTAAAACGGTAATTTTACA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
54859808 AATCGAGGGTAAAACGATAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
**
54859835 AATCGAGGGTAAAACAATAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
54859862 AA-CTGAGGGTAAAATGGTAATTCTATA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
**
54859889 AATCGAGGGTAAAATAGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* ***
54859916 AA-CTAAGGGTAAAATAATAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
* * **
54859943 AATCGAGGGTAAAACAGTAATTTTACA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
54859970 AATCAAGGGTAAAACAGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
54859997 AA-CTGAGGGTAAAACGATAATTCTATA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
* * **
54860024 AATCGAGGGTAAAATGGTAATTTTACA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
54860051 AATCGAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* * **
54860078 AATCGAGGGTAAAATGGTAATTTTAAA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
54860105 AATCGAGGGTAAAACAGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
54860132 AATCGAAGGTAAAATGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
54860159 AA-CTGAGGGTAAAACGGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
** * **
54860186 AATCGAGCATAAAACGGTAATTTTAAA
1 AATCGAGGGTAAAACGGTAATTCTGTA
**
54860213 AATCGAGGGTAAAACAATAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
54860240 AATCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
54860267 AA-CTGAGGGTAAAACGGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
* **
54860294 AATCGAGGGTAAAACGGTAATTTTAAA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
54860321 AATCGAGGGTAAAATGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
54860348 AATCGAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
54860375 AATCGAG
1 AATCGAG
54860382 AGTACTTTGG
Statistics
Matches: 558, Mismatches: 81, Indels: 30
0.83 0.12 0.04
Matches are distributed among these distances:
25 5 0.01
26 21 0.04
27 522 0.94
28 10 0.02
ACGTcount: A:0.42, C:0.10, G:0.21, T:0.27
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTCTGTA
Found at i:54863038 original size:40 final size:39
Alignment explanation
Indices: 54862941--54863201 Score: 260
Period size: 40 Copynumber: 6.6 Consensus size: 39
54862931 TCCTCGTTCA
* * * *
54862941 AATGCCTTCGGGACATAGCCCGG-TTTAGTAACTCACAC
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
*
54862979 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCAC
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
54863018 GAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
* *
54863058 GAATGTCTTCGGGACTTAACCCGGA-TTAATATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
* * * *
54863097 AAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGG-ATTTAATAACTCGCAC
** * * * *
54863137 AAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
1 -AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCAC
* *
54863178 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
54863202 CAGCATTCAA
Statistics
Matches: 193, Mismatches: 22, Indels: 14
0.84 0.10 0.06
Matches are distributed among these distances:
38 22 0.11
39 51 0.26
40 110 0.57
41 10 0.05
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
Found at i:54863105 original size:79 final size:77
Alignment explanation
Indices: 54862939--54863201 Score: 273
Period size: 79 Copynumber: 3.3 Consensus size: 77
54862929 GCTCCTCGTT
* * * *
54862939 CAAATGCCTTCGGGACATAGCCCGG-TTTAGTAACTCACACAATGCCTTCGGGACATAACCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAATGCCTTCGGGACTTAACCCGGA
54863003 TTTAATAACTCGCA
66 -TTAAT-ACTCGCA
* * *
54863017 CGAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAATGTCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC-AATGCCTTCGGGACTTAACCCGG
54863082 ATTAATATCTCGCA
65 ATTAATA-CTCGCA
* * * **
54863096 CAAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCACAAATGCCTTC-GGATCTTAGTCC
1 CAAATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCAC-AATGCCTTCGGGA-CTTAACCC
* *
54863159 GGATATATTCACTTAGCA
63 GGAT-TAAT-AC-TCGCA
*
54863177 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
54863202 CAGCATTCAA
Statistics
Matches: 157, Mismatches: 20, Indels: 15
0.82 0.10 0.08
Matches are distributed among these distances:
78 26 0.17
79 74 0.47
80 48 0.31
81 9 0.06
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (77 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAATGCCTTCGGGACTTAACCCGGA
TTAATACTCGCA
Found at i:54863187 original size:119 final size:117
Alignment explanation
Indices: 54862939--54863201 Score: 278
Period size: 119 Copynumber: 2.2 Consensus size: 117
54862929 GCTCCTCGTT
* * * *
54862939 CAAATGCCTTCGGGACATAGCCCGGTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGGAT
1 CAAA-GCCTTCGGGACTTAGCCCGGATTAATAACTCACACAAGGCCTTCGGGACATAACCCGGAT
* * *
54863004 TTAATAACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
65 TTAATAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATAATAACTAGCA
* * * * * * *
54863057 CGAATGTCTTCGGGACTTAACCCGGATTAATATCTCGCACAAAGGCCTTCGGGGCTTAACCCGGA
1 C-AAAGCCTTCGGGACTTAGCCCGGATTAATAACTCACAC-AAGGCCTTCGGGACATAACCCGG-
* * ** * *
54863122 ATTT-GTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCA
63 ATTTAATAACTCGCACAAATGCCTTCGGGA-CTTAACCCGGATATAATAAC-TAGCA
54863177 CAAAGCCTTCGGGACTTAGCCCGGA
1 CAAAGCCTTCGGGACTTAGCCCGGA
54863202 CAGCATTCAA
Statistics
Matches: 117, Mismatches: 23, Indels: 9
0.79 0.15 0.06
Matches are distributed among these distances:
118 32 0.27
119 76 0.65
120 9 0.08
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (117 bp):
CAAAGCCTTCGGGACTTAGCCCGGATTAATAACTCACACAAGGCCTTCGGGACATAACCCGGATT
TAATAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATAATAACTAGCA
Found at i:54863210 original size:41 final size:41
Alignment explanation
Indices: 54863133--54863210 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
54863123 TTTGTATCTC
* * *
54863133 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
54863174 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
54863211 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:54874440 original size:28 final size:29
Alignment explanation
Indices: 54874367--54874453 Score: 92
Period size: 28 Copynumber: 3.1 Consensus size: 29
54874357 AGCATGGCTG
* * * *
54874367 CCAGATACAGA-AA-ATGTGACAGAGTCA
1 CCAGATACAGATAATTTGTGGCATAGCCA
*
54874394 CCAGATACAGATATTTTGTGGCAGT-GCCA
1 CCAGATACAGATAATTTGTGGCA-TAGCCA
54874423 CCAGA-ACAGATAATTTGTGGCATAGCCA
1 CCAGATACAGATAATTTGTGGCATAGCCA
54874451 CCA
1 CCA
54874454 AGACGCTTCC
Statistics
Matches: 50, Mismatches: 6, Indels: 7
0.79 0.10 0.11
Matches are distributed among these distances:
27 12 0.24
28 24 0.48
29 14 0.28
ACGTcount: A:0.36, C:0.22, G:0.22, T:0.21
Consensus pattern (29 bp):
CCAGATACAGATAATTTGTGGCATAGCCA
Found at i:54874607 original size:28 final size:28
Alignment explanation
Indices: 54874560--54874623 Score: 110
Period size: 28 Copynumber: 2.3 Consensus size: 28
54874550 AAATTAACCC
*
54874560 TAGGGGTATAAAGGTCATTTTGCATACA
1 TAGGGGTATAAAGGTAATTTTGCATACA
*
54874588 TAGGGGTATAATGGTAATTTTGCATACA
1 TAGGGGTATAAAGGTAATTTTGCATACA
54874616 TAGGGGTA
1 TAGGGGTA
54874624 GTTAGTAAAT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.31, C:0.08, G:0.28, T:0.33
Consensus pattern (28 bp):
TAGGGGTATAAAGGTAATTTTGCATACA
Found at i:54877048 original size:467 final size:467
Alignment explanation
Indices: 54876175--54877890 Score: 3252
Period size: 467 Copynumber: 3.7 Consensus size: 467
54876165 TTATACAAAT
* *
54876175 ACATTTAAAAAAATTAAATATTAAAATCACACATTATTAATATAACAAAATAGTAATTTGAATAT
1 ACATTTAAAAATATTAAATATTAAAATCAAACATTATTAATATAACAAAATAGTAATTTGAATAT
*
54876240 AATAATATCAAGAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATTAAGGTTATA
66 AATAATATCAAGAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAATTAAATTAAGGTTATA
54876305 TAAATATTCAATAGCGATAGAACTTTTTTCAATTCTTCTTGAATTTTTTAAGATTCATCATACGT
131 TAAATATTCAATAGCGATAGAACTTTTTTCAATTCTTCTTGAATTTTTTAAGATTCATCATACGT
54876370 GGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAGCTCGATATAAGGCAACCCGTCAGGT
196 GGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAGCTCGATATAAGGCAACCCGTCAGGT
54876435 TTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAGGAATGGACAAGCAAGCTACATA
261 TTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAGGAATGGACAAGCAAGCTACATA
54876500 TATGGTAATAAAATTAATTCATACTTAAGTTGAATCAAATAATAATTAAGTTGAACCAAAATATA
326 TATGGTAATAAAATTAATTCATACTTAAGTTGAATCAAATAATAATTAAGTTGAACCAAAATATA
54876565 AAAACTTATTCATACTTATTCATACTTCAAATAATAATTAATAGTATTTTGATAAAAATTATTTA
391 AAAACTTATTCATACTTATTCATACTTCAAATAATAATTAATAGTATTTTGATAAAAATTATTTA
54876630 TAACTTTTAAAG
456 TAACTTTTAAAG
54876642 ACATTTAAAAATATTAAATATTAAAATCAAACATTATTAATATAACAAAATAGTAATTTGAATAT
1 ACATTTAAAAATATTAAATATTAAAATCAAACATTATTAATATAACAAAATAGTAATTTGAATAT
54876707 AATAATATCAAGAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAATTAAATTAAGGTTATA
66 AATAATATCAAGAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAATTAAATTAAGGTTATA
54876772 TAAATATTCAATAGCGATAGAACTTTTTTCAATTCTTCTTGAATTTTTTAAGATTCATCATACGT
131 TAAATATTCAATAGCGATAGAACTTTTTTCAATTCTTCTTGAATTTTTTAAGATTCATCATACGT
54876837 GGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAGCTCGATATAAGGCAACCCGTCAGGT
196 GGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAGCTCGATATAAGGCAACCCGTCAGGT
54876902 TTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAGGAATGGACAAGCAAGCTACATA
261 TTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAGGAATGGACAAGCAAGCTACATA
54876967 TATGGTAATAAAATTAATTCATACTTAAGTTGAATCAAATAATAATTAAGTTGAACCAAAATATA
326 TATGGTAATAAAATTAATTCATACTTAAGTTGAATCAAATAATAATTAAGTTGAACCAAAATATA
*
54877032 AAAACTTATTCATACTTATTCATACTTCAAATAATAATTAATACTATTTTGATAAAAATTATTTA
391 AAAACTTATTCATACTTATTCATACTTCAAATAATAATTAATAGTATTTTGATAAAAATTATTTA
54877097 TAACTTTTAAAG
456 TAACTTTTAAAG
*
54877109 ACATTTAAAAATATTAAATATTAAAAGCAAACATTATTAATATAACAAAATAGTAATTTGAATAT
1 ACATTTAAAAATATTAAATATTAAAATCAAACATTATTAATATAACAAAATAGTAATTTGAATAT
54877174 AATAATATCAAGAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAATTAAATTAAGGTTATA
66 AATAATATCAAGAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAATTAAATTAAGGTTATA
* *
54877239 TAAATATTCAATAGCGATGGAACTTTTTTCAATTCTTCTTGAATTTTTTAAGATTCATTATACGT
131 TAAATATTCAATAGCGATAGAACTTTTTTCAATTCTTCTTGAATTTTTTAAGATTCATCATACGT
*
54877304 GGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAGCTCGATATAAGGCAACCCATCAGGT
196 GGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAGCTCGATATAAGGCAACCCGTCAGGT
*
54877369 TTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAGGAATGGAGAAGCAAGCTACATA
261 TTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAGGAATGGACAAGCAAGCTACATA
54877434 TATGGTAATAAAATTAATTCATACTTAAGTTGAATCAAATAATAATTAAGTTGAACCAAAATATA
326 TATGGTAATAAAATTAATTCATACTTAAGTTGAATCAAATAATAATTAAGTTGAACCAAAATATA
54877499 AAAACTTATTCATACTTATTCATACTTCAAATAATAATTAATAGTATTTTGATAAAAATTATTTA
391 AAAACTTATTCATACTTATTCATACTTCAAATAATAATTAATAGTATTTTGATAAAAATTATTTA
54877564 TAACTTTTAAAG
456 TAACTTTTAAAG
* * * *
54877576 ACATTTAAAAATATTAACTATTAAAACCACACATTATTAATATAACAAAATAGTCATTTGAATAT
1 ACATTTAAAAATATTAAATATTAAAATCAAACATTATTAATATAACAAAATAGTAATTTGAATAT
54877641 AATAATATCAAGAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAATTAAATTAAGGTTATA
66 AATAATATCAAGAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAATTAAATTAAGGTTATA
* * * * * *
54877706 CAAATATTCAATAGCGATAGAACTCTTTCCAATTCTTTTTAAATTTTTTAAGATTCATCACACGT
131 TAAATATTCAATAGCGATAGAACTTTTTTCAATTCTTCTTGAATTTTTTAAGATTCATCATACGT
*
54877771 GGCGTTGTTACACCGAGGGAGGATCCATTATATCTTGCAGCTCGATATAAGGCAACCCGTCAGGT
196 GGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAGCTCGATATAAGGCAACCCGTCAGGT
54877836 TTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAGGAATGGACAAGC
261 TTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAGGAATGGACAAGC
54877891 TCAGCTATTG
Statistics
Matches: 1224, Mismatches: 25, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
467 1224 1.00
ACGTcount: A:0.41, C:0.12, G:0.11, T:0.35
Consensus pattern (467 bp):
ACATTTAAAAATATTAAATATTAAAATCAAACATTATTAATATAACAAAATAGTAATTTGAATAT
AATAATATCAAGAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAATTAAATTAAGGTTATA
TAAATATTCAATAGCGATAGAACTTTTTTCAATTCTTCTTGAATTTTTTAAGATTCATCATACGT
GGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAGCTCGATATAAGGCAACCCGTCAGGT
TTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAGGAATGGACAAGCAAGCTACATA
TATGGTAATAAAATTAATTCATACTTAAGTTGAATCAAATAATAATTAAGTTGAACCAAAATATA
AAAACTTATTCATACTTATTCATACTTCAAATAATAATTAATAGTATTTTGATAAAAATTATTTA
TAACTTTTAAAG
Found at i:54878650 original size:13 final size:13
Alignment explanation
Indices: 54878632--54878657 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
54878622 ATATAATAAT
54878632 TATTTTATGTTAA
1 TATTTTATGTTAA
54878645 TATTTTATGTTAA
1 TATTTTATGTTAA
54878658 AAATAAAAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.00, G:0.08, T:0.62
Consensus pattern (13 bp):
TATTTTATGTTAA
Found at i:54880228 original size:40 final size:40
Alignment explanation
Indices: 54880180--54880387 Score: 330
Period size: 40 Copynumber: 5.2 Consensus size: 40
54880170 GGACTAAGAT
54880180 CCGAAGGCATTTGTGCGAGTGACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTGACTATATCCGGGCTAAGTC
* *
54880220 CCGAAGGCATTTGTACTAGTGACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTGACTATATCCGGGCTAAGTC
*
54880260 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTGACTATATCCGGGCTAAGTC
* *
54880300 CCGAAGGCATTTGTGCGAGTTACTATATACGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTGACTATATCCGGGCTAAGTC
*
54880340 CCGAAGGCATTTGTGCGAGTTG-CTATATCC-GGCTAAATC
1 CCGAAGGCATTTGTGCGAG-TGACTATATCCGGGCTAAGTC
*
54880379 CCAAAGGCA
1 CCGAAGGCA
54880388 CTTGGGTTTG
Statistics
Matches: 157, Mismatches: 10, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
39 16 0.10
40 140 0.89
41 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCGAGTGACTATATCCGGGCTAAGTC
Found at i:54885599 original size:41 final size:41
Alignment explanation
Indices: 54885542--54885884 Score: 431
Period size: 41 Copynumber: 8.4 Consensus size: 41
54885532 GTTCTATGAC
54885542 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGATCTGGT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGATCTGGT
*
54885583 TTTTAGCGGCGTTTTACCGAAAGCGCCGCTAATG-TACTGGT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGAT-CTGGT
* * *
54885624 TTTTAGCGGCGTTTTACCGAAAGCACCGCTAATGCTCTGGT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGATCTGGT
* *
54885665 TTTTAGCGGCGTTTTACCCAAAGCGCCGCTAATGCTCTGGT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGATCTGGT
* *
54885706 TTTTAGCGGCGCTTTACCCAAAGCGCCGCTAATGATCTGGT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGATCTGGT
* * *
54885747 TTTTAGTGGCGTTTTACCTAAAGCACCGCTAATGATCTGGT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGATCTGGT
** * *
54885788 TTTTAATGGCGTTTTACCTAAAGCGCCGCTAATGAT-TAGT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGATCTGGT
* ** ** * * * *
54885828 TTTTAACGATGTTTTAGTAAAAAACGCCGCTATTGCTCT-AT
1 TTTTAGCGGCGTTTTA-CCAAAAGCGCCGCTAATGATCTGGT
54885869 TTTTAGCGGCGTTTTA
1 TTTTAGCGGCGTTTTA
54885885 GTAAAAAATG
Statistics
Matches: 272, Mismatches: 26, Indels: 8
0.89 0.08 0.03
Matches are distributed among these distances:
40 17 0.06
41 253 0.93
42 2 0.01
ACGTcount: A:0.21, C:0.22, G:0.23, T:0.34
Consensus pattern (41 bp):
TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGATCTGGT
Found at i:54885885 original size:41 final size:41
Alignment explanation
Indices: 54885838--54885947 Score: 170
Period size: 41 Copynumber: 2.7 Consensus size: 41
54885828 TTTTAACGAT
*
54885838 GTTTTAGTAAAAAACGCCGCTATTGCTCTATTTTTAGCGGC
1 GTTTTAGTAAAAAACGCCGCTATTGCTCTATTTTTAGCAGC
* *
54885879 GTTTTAGTAAAAAATGCCGCTGTTGCTCTATTTTTAGCAGC
1 GTTTTAGTAAAAAACGCCGCTATTGCTCTATTTTTAGCAGC
54885920 GTTTTA--AGAAAAACGCCGCTATTGCTCT
1 GTTTTAGTA-AAAAACGCCGCTATTGCTCT
54885948 GTATTTTAAA
Statistics
Matches: 63, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
39 1 0.02
40 18 0.29
41 44 0.70
ACGTcount: A:0.25, C:0.19, G:0.19, T:0.36
Consensus pattern (41 bp):
GTTTTAGTAAAAAACGCCGCTATTGCTCTATTTTTAGCAGC
Found at i:54885996 original size:12 final size:12
Alignment explanation
Indices: 54885979--54886004 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
54885969 GTTTGTTGAT
54885979 AAAACGCCGCTA
1 AAAACGCCGCTA
54885991 AAAACGCCGCTA
1 AAAACGCCGCTA
54886003 AA
1 AA
54886005 GCCCTATTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.46, C:0.31, G:0.15, T:0.08
Consensus pattern (12 bp):
AAAACGCCGCTA
Found at i:54889452 original size:48 final size:48
Alignment explanation
Indices: 54889374--54889617 Score: 229
Period size: 48 Copynumber: 5.0 Consensus size: 48
54889364 ACGAATATCA
* * * *
54889374 CGACATGTGAGTATTGAGATCCCGTGTAAGACCATATCTGGGATATGGCAT
1 CGACAT-TGA-TA-TGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCAT
* * * *
54889425 CGGCATTGATAAGAGATCCTGTGTAAGAGCC-TGTCTGGGACATGGCAT
1 CGACATTGATATGAGAGCCAGTGTAAGA-CCATGTCTGGGACATGGCAT
** *
54889473 CGATGTTGATATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCAT
1 CGACATTGATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCAT
** *
54889521 CGACATTGATATGTTAGCCAGTGTAAGACCATGGCTGGGACATGGCAT
1 CGACATTGATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCAT
* * * ** * * * * *
54889569 TGGCTTTGATATTTGTGCTAGTATAAGACCATGTTTAGGACATGGCAT
1 CGACATTGATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCAT
54889617 C
1 C
54889618 AGCACTGACA
Statistics
Matches: 163, Mismatches: 28, Indels: 7
0.82 0.14 0.04
Matches are distributed among these distances:
47 2 0.01
48 149 0.91
49 4 0.02
50 3 0.02
51 5 0.03
ACGTcount: A:0.26, C:0.17, G:0.29, T:0.28
Consensus pattern (48 bp):
CGACATTGATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCAT
Found at i:54889521 original size:96 final size:96
Alignment explanation
Indices: 54889397--54889617 Score: 257
Period size: 96 Copynumber: 2.3 Consensus size: 96
54889387 TTGAGATCCC
* * * * * *
54889397 GTGTAAGACCATATCTGGGATATGGCATCGGCATTGATAAGAGATCCTGTGTAAGAGCC-TGTCT
1 GTGTAAGACCATGTCTGGGACATGGCATCGACATTGATAAGAGAGCCAGTGTAAGA-CCATGGCT
54889461 GGGACATGGCA-TCGATGTTGATATGTGAGCCA
65 GGGACATGGCATTCGAT-TTGATATGTGAGCCA
* **
54889493 GTGTAAGACCATGTCTGGGACATGGCATCGACATTGATATGTTAGCCAGTGTAAGACCATGGCTG
1 GTGTAAGACCATGTCTGGGACATGGCATCGACATTGATAAGAGAGCCAGTGTAAGACCATGGCTG
* * * * *
54889558 GGACATGGCATTGGCTTTGATATTTGTGCTA
66 GGACATGGCATTCGATTTGATATGTGAGCCA
* * *
54889589 GTATAAGACCATGTTTAGGACATGGCATC
1 GTGTAAGACCATGTCTGGGACATGGCATC
54889618 AGCACTGACA
Statistics
Matches: 106, Mismatches: 17, Indels: 4
0.83 0.13 0.03
Matches are distributed among these distances:
95 2 0.02
96 101 0.95
97 3 0.03
ACGTcount: A:0.26, C:0.17, G:0.29, T:0.29
Consensus pattern (96 bp):
GTGTAAGACCATGTCTGGGACATGGCATCGACATTGATAAGAGAGCCAGTGTAAGACCATGGCTG
GGACATGGCATTCGATTTGATATGTGAGCCA
Found at i:54892653 original size:43 final size:43
Alignment explanation
Indices: 54892591--54892712 Score: 138
Period size: 43 Copynumber: 2.8 Consensus size: 43
54892581 ACAGTGCTAT
*
54892591 TCGGGCCTTCAAGCCTAGCAGGCTATAATGCCGGTGATTTAATA
1 TCGGG-CTTCAAGCCTAGCAGGCTATAATGCCGGTGAGTTAATA
* *** *
54892635 TCGGGCTTTAAGCCTAGCAGGCTATAATGTTTGTAAGTTAATA
1 TCGGGCTTCAAGCCTAGCAGGCTATAATGCCGGTGAGTTAATA
* * * *
54892678 TCTGGCTTCGAGCCTAGCAGGC-GTAATACCGGTGA
1 TCGGGCTTCAAGCCTAGCAGGCTATAATGCCGGTGA
54892713 ATGAATTCAG
Statistics
Matches: 63, Mismatches: 15, Indels: 2
0.79 0.19 0.03
Matches are distributed among these distances:
42 7 0.11
43 51 0.81
44 5 0.08
ACGTcount: A:0.25, C:0.20, G:0.26, T:0.29
Consensus pattern (43 bp):
TCGGGCTTCAAGCCTAGCAGGCTATAATGCCGGTGAGTTAATA
Found at i:54899383 original size:43 final size:43
Alignment explanation
Indices: 54899322--54899415 Score: 134
Period size: 43 Copynumber: 2.2 Consensus size: 43
54899312 CCTACGAGCT
* * *
54899322 TAGCAGGCTATAATGCCAGCGATTTAATATCGAGCTTTAAGTC
1 TAGCAGGCTATAATGCCAGCGAGTTAATATCGAGCTTCAAGCC
* * *
54899365 TAGCAGGCTATAATGCCAGTGAGTTAATATCGGGCTTCGAGCC
1 TAGCAGGCTATAATGCCAGCGAGTTAATATCGAGCTTCAAGCC
54899408 TAGCAGGC
1 TAGCAGGC
54899416 GTAATACCGG
Statistics
Matches: 45, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 45 1.00
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.27
Consensus pattern (43 bp):
TAGCAGGCTATAATGCCAGCGAGTTAATATCGAGCTTCAAGCC
Found at i:54899966 original size:41 final size:40
Alignment explanation
Indices: 54899898--54900147 Score: 275
Period size: 41 Copynumber: 6.1 Consensus size: 40
54899888 GTAGAAATTA
* *
54899898 TAAAACACGGAGCAATAGCGGCGTTTTTGGTAAAACGCCGC
1 TAAAA-ACAGAGCAATAGCGGCATTTTTGGTAAAACGCCGC
* *
54899939 TAAAAACAGAGCAATAGTGGTATTTTTTGGTAAAACGCCGC
1 TAAAAACAGAGCAATAGCGGCA-TTTTTGGTAAAACGCCGC
**** *
54899980 TAAAAACAGAGCAATAGCGGCATTTTACCAAAAACGCTGC
1 TAAAAACAGAGCAATAGCGGCATTTTTGGTAAAACGCCGC
* * *
54900020 TAAAAACCAGAGCATTAGCGGCGTTTTTGGTGAAACGCCGC
1 TAAAAA-CAGAGCAATAGCGGCATTTTTGGTAAAACGCCGC
* * *
54900061 TGAAAACCAGAGCATTAGCGGCACTTTTGGTAAAACGCCGC
1 T-AAAAACAGAGCAATAGCGGCATTTTTGGTAAAACGCCGC
* ** * *
54900102 TAAAAACCAGAGCATTAGCGGCGCTTTCGATAAAACGCCGC
1 TAAAAA-CAGAGCAATAGCGGCATTTTTGGTAAAACGCCGC
54900143 TAAAA
1 TAAAA
54900148 GTCATATAAT
Statistics
Matches: 178, Mismatches: 27, Indels: 8
0.84 0.13 0.04
Matches are distributed among these distances:
40 36 0.20
41 138 0.78
42 4 0.02
ACGTcount: A:0.35, C:0.22, G:0.23, T:0.20
Consensus pattern (40 bp):
TAAAAACAGAGCAATAGCGGCATTTTTGGTAAAACGCCGC
Found at i:54900250 original size:17 final size:17
Alignment explanation
Indices: 54900217--54900251 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
54900207 TTAAAAAACT
**
54900217 AAACCCCTAAATCCTAA
1 AAACCCCTAAAGACTAA
54900234 AAACCCCTAAAGACTAA
1 AAACCCCTAAAGACTAA
54900251 A
1 A
54900252 CTATAACCCC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.51, C:0.31, G:0.03, T:0.14
Consensus pattern (17 bp):
AAACCCCTAAAGACTAA
Found at i:54900544 original size:16 final size:15
Alignment explanation
Indices: 54900515--54900570 Score: 58
Period size: 17 Copynumber: 3.5 Consensus size: 15
54900505 TCATCAAATT
54900515 AACTCTAAAACCCTA
1 AACTCTAAAACCCTA
*
54900530 AACTCTTAAACCCCTA
1 AACTC-TAAAACCCTA
*
54900546 AACCTAATAAAACCCTA
1 AA-CT-CTAAAACCCTA
*
54900563 AACACTAA
1 AACTCTAA
54900571 TCTATAACCC
Statistics
Matches: 33, Mismatches: 5, Indels: 6
0.75 0.11 0.14
Matches are distributed among these distances:
15 8 0.24
16 12 0.36
17 13 0.39
ACGTcount: A:0.48, C:0.32, G:0.00, T:0.20
Consensus pattern (15 bp):
AACTCTAAAACCCTA
Found at i:54900561 original size:17 final size:18
Alignment explanation
Indices: 54900520--54900571 Score: 65
Period size: 16 Copynumber: 3.1 Consensus size: 18
54900510 AAATTAACTC
*
54900520 TAAAACCCTAAACTCT--
1 TAAAACCCTAAACACTAA
*
54900536 TAAACCCCTAAAC-CTAA
1 TAAAACCCTAAACACTAA
54900553 TAAAACCCTAAACACTAA
1 TAAAACCCTAAACACTAA
54900571 T
1 T
54900572 CTATAACCCT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
15 2 0.06
16 12 0.39
17 12 0.39
18 5 0.16
ACGTcount: A:0.48, C:0.31, G:0.00, T:0.21
Consensus pattern (18 bp):
TAAAACCCTAAACACTAA
Found at i:54901225 original size:19 final size:20
Alignment explanation
Indices: 54901190--54901231 Score: 68
Period size: 20 Copynumber: 2.1 Consensus size: 20
54901180 ATTAGATTGA
54901190 AAAAAAATTGATAAATAAAT
1 AAAAAAATTGATAAATAAAT
*
54901210 AAAAACATTGAT-AATAAAT
1 AAAAAAATTGATAAATAAAT
54901229 AAA
1 AAA
54901232 TATAAAATAT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
19 10 0.48
20 11 0.52
ACGTcount: A:0.69, C:0.02, G:0.05, T:0.24
Consensus pattern (20 bp):
AAAAAAATTGATAAATAAAT
Found at i:54901499 original size:6 final size:6
Alignment explanation
Indices: 54901483--54901513 Score: 53
Period size: 6 Copynumber: 5.2 Consensus size: 6
54901473 ACCCATACGA
*
54901483 TCCCTT CCCCTT TCCCTT TCCCTT TCCCTT T
1 TCCCTT TCCCTT TCCCTT TCCCTT TCCCTT T
54901514 GGTTTTGAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.00, C:0.52, G:0.00, T:0.48
Consensus pattern (6 bp):
TCCCTT
Found at i:54903738 original size:22 final size:23
Alignment explanation
Indices: 54903687--54903739 Score: 76
Period size: 22 Copynumber: 2.4 Consensus size: 23
54903677 AGAAAACCAT
54903687 TTTAT-GTGTTAAATGCTGAAAA
1 TTTATGGTGTTAAATGCTGAAAA
*
54903709 TTTA-GGTGTTAAATGCTG-CAA
1 TTTATGGTGTTAAATGCTGAAAA
54903730 TTTATGGTGT
1 TTTATGGTGT
54903740 CTGAAAGTTG
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
21 6 0.21
22 22 0.79
ACGTcount: A:0.28, C:0.06, G:0.23, T:0.43
Consensus pattern (23 bp):
TTTATGGTGTTAAATGCTGAAAA
Found at i:54905553 original size:43 final size:41
Alignment explanation
Indices: 54905492--54905638 Score: 170
Period size: 43 Copynumber: 3.4 Consensus size: 41
54905482 TTTTTGAAGT
* *
54905492 TCATGATTTTTAGCGGCGTTTGAGAGAAAAGGGCCGCTAAAAG
1 TCATGATTTTTAGCGGCGTTTG-G-GAAAAGTGCCGCTAAAGG
* *
54905535 TCATG-TTCTTTAGTGGCGTCTATGGGAAAAGTGCTGCTAAAGG
1 TCATGATT-TTTAGCGGCGT-T-TGGGAAAAGTGCCGCTAAAGG
* *
54905578 TCATGATCTTTAGCGGCGTTTGTGGGAAAAGTGCCGTTAAAGG
1 TCATGATTTTTAGCGGCG-TT-TGGGAAAAGTGCCGCTAAAGG
54905621 TCATGATTTTTAGCGGCG
1 TCATGATTTTTAGCGGCG
54905639 CTTTTCCCGA
Statistics
Matches: 89, Mismatches: 10, Indels: 10
0.82 0.09 0.09
Matches are distributed among these distances:
42 2 0.02
43 81 0.91
44 4 0.04
45 2 0.02
ACGTcount: A:0.24, C:0.14, G:0.31, T:0.31
Consensus pattern (41 bp):
TCATGATTTTTAGCGGCGTTTGGGAAAAGTGCCGCTAAAGG
Found at i:54905660 original size:86 final size:86
Alignment explanation
Indices: 54905492--54905675 Score: 185
Period size: 86 Copynumber: 2.1 Consensus size: 86
54905482 TTTTTGAAGT
* *
54905492 TCATGATTTTTAGCGGCGTTTGAGAGAAAAGGGCCGCTAAAAGTCATGTTCTTTAGTGGCGTCTA
1 TCATGATCTTTAGCGGCGTTTGAGAGAAAAGGGCCGCTAAAAGTCATGTTCTTTAGCGGCGTCTA
** * * **
54905557 TGGGAAAAGTGCTGCTAAAGG
66 TCCGAAAAGCGCCGCTAAAAA
* * * * *
54905578 TCATGATCTTTAGCGGCGTTTGTGGGAAAAGTGCCGTTAAAGGTCATGATT-TTTAGCGGCG-CT
1 TCATGATCTTTAGCGGCGTTTGAGAGAAAAGGGCCGCTAAAAGTCATG-TTCTTTAGCGGCGTC-
*
54905641 TTTCCCGAAAA-CGCCGCTAAAAA
64 TAT-CCGAAAAGCGCCGCTAAAAA
*
54905664 TCATGACCTTTA
1 TCATGATCTTTA
54905676 ACAGCATTTT
Statistics
Matches: 80, Mismatches: 15, Indels: 6
0.79 0.15 0.06
Matches are distributed among these distances:
85 1 0.01
86 72 0.90
87 7 0.09
ACGTcount: A:0.26, C:0.17, G:0.27, T:0.30
Consensus pattern (86 bp):
TCATGATCTTTAGCGGCGTTTGAGAGAAAAGGGCCGCTAAAAGTCATGTTCTTTAGCGGCGTCTA
TCCGAAAAGCGCCGCTAAAAA
Found at i:54910817 original size:45 final size:44
Alignment explanation
Indices: 54910751--54910838 Score: 140
Period size: 45 Copynumber: 2.0 Consensus size: 44
54910741 ATATCGTACA
* *
54910751 ATACTATTCTGGCCTTTGAGCCTAGCAGGCTATAATGCCAGTGAG
1 ATACTATTCAGGCCTTCGAGCCTAGCAGGCTA-AATGCCAGTGAG
*
54910796 ATACTATTCAGGCCTTCGAGCCTAGCAGGCTAAATGCCGGTGA
1 ATACTATTCAGGCCTTCGAGCCTAGCAGGCTAAATGCCAGTGA
54910839 TTTGATAAAA
Statistics
Matches: 40, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
44 10 0.25
45 30 0.75
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (44 bp):
ATACTATTCAGGCCTTCGAGCCTAGCAGGCTAAATGCCAGTGAG
Found at i:54921981 original size:45 final size:45
Alignment explanation
Indices: 54921917--54922132 Score: 218
Period size: 45 Copynumber: 5.0 Consensus size: 45
54921907 TATCGTACGG
* *
54921917 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATGATGCCAGTGAGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
* * *
54921962 TACTATTCGAGCCTTTGAGCCTAGCAGGCTATAATGTCGGTCAGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
* * *
54922007 TACTATTCGGGCCTTTGAGCCTAGTAAGCTATAATGCCGGTGAAA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
* * *
54922052 TGA-TATT--GGACTTCGAGCCTAGCAGGCGA-AATGCCGGTG-GA
1 T-ACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
* *
54922093 TGA--ATTCGGG--TTTAAAACCTAGCAGGCTA-AATGCCGGTGA
1 T-ACTATTCGGGCCTTT-GAGCCTAGCAGGCTATAATGCCGGTGA
54922133 TTTGATAAAA
Statistics
Matches: 145, Mismatches: 21, Indels: 13
0.81 0.12 0.07
Matches are distributed among these distances:
40 5 0.03
41 26 0.18
42 12 0.08
43 17 0.12
45 84 0.58
46 1 0.01
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.26
Consensus pattern (45 bp):
TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
Found at i:54924066 original size:93 final size:95
Alignment explanation
Indices: 54923926--54924102 Score: 259
Period size: 93 Copynumber: 1.9 Consensus size: 95
54923916 CGCCCATAAG
* * *
54923926 CGAACTCGGACTCAACTCAACGAAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCA
1 CGAACTCGGACTCAACTCAAC--AAC-AGCTCGGACATTCGCATCCATAAATGAACTCGGACTCA
54923991 ACTCAACAAGCTCGGATGCCTAGTTACATTTCA
63 ACTCAACAAGCTCGGATGCCTAGTTACATTTCA
*
54924024 CGAACTCGGACTCAACTCAAC-A-AGTTCGGACATTCGCATCCATAAATGAACTCGGACTCAACT
1 CGAACTCGGACTCAACTCAACAACAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACT
* *
54924087 CAACGAGTTCGGATGC
66 CAACAAGCTCGGATGC
54924103 TCAACCATCC
Statistics
Matches: 73, Mismatches: 6, Indels: 5
0.87 0.07 0.06
Matches are distributed among these distances:
93 51 0.70
95 1 0.01
98 21 0.29
ACGTcount: A:0.31, C:0.29, G:0.20, T:0.20
Consensus pattern (95 bp):
CGAACTCGGACTCAACTCAACAACAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACT
CAACAAGCTCGGATGCCTAGTTACATTTCA
Found at i:54934036 original size:15 final size:15
Alignment explanation
Indices: 54934014--54934076 Score: 74
Period size: 15 Copynumber: 4.2 Consensus size: 15
54934004 AAGAAATCGA
54934014 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
54934029 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
*
54934043 AATAAAGAAATCCAAA
1 -ATAAAGAAATCCAAG
*
54934059 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
54934074 ATA
1 ATA
54934077 CGATACTATG
Statistics
Matches: 39, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
14 4 0.10
15 32 0.82
16 3 0.08
ACGTcount: A:0.60, C:0.16, G:0.13, T:0.11
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:54934046 original size:30 final size:30
Alignment explanation
Indices: 54934012--54934071 Score: 102
Period size: 30 Copynumber: 2.0 Consensus size: 30
54934002 ACAAGAAATC
* *
54934012 GAATAAAGAAATCCAAGATAGAGAAACCCA
1 GAATAAAGAAATCCAAAATAAAGAAACCCA
54934042 GAATAAAGAAATCCAAAATAAAGAAACCCA
1 GAATAAAGAAATCCAAAATAAAGAAACCCA
54934072 AGATACGATA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.60, C:0.17, G:0.13, T:0.10
Consensus pattern (30 bp):
GAATAAAGAAATCCAAAATAAAGAAACCCA
Found at i:54937124 original size:49 final size:49
Alignment explanation
Indices: 54937070--54937387 Score: 430
Period size: 49 Copynumber: 6.5 Consensus size: 49
54937060 CTGGTACGCA
* * * *
54937070 TAGTAGCCTGCACATAGTATTACACATGCGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACG
*
54937119 TAGTAGCCTGCACTTAGTACTACACACGTGGCCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACG
*
54937168 TAGTAGCCTGCACTTAGTACCACACACGTGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACG
54937217 TAGTAGCCTGCACTTAGTACT--ACAC---ACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACG
** * *
54937261 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGTTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC-AATTATCCGGTACACG
* * * * *
54937311 TAGTAGCTTGCACTTAGTACTACACACGTGATCACAGTTTTCGGGTACACA
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-C-CAATTATCCGGTACACG
*
54937362 TAGTAGCCTACACTTAGTACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
54937388 TACGACCTTA
Statistics
Matches: 239, Mismatches: 22, Indels: 14
0.87 0.08 0.05
Matches are distributed among these distances:
44 40 0.17
46 4 0.02
47 4 0.02
49 114 0.48
50 42 0.18
51 34 0.14
52 1 0.00
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.25
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACG
Found at i:54943261 original size:40 final size:39
Alignment explanation
Indices: 54943211--54943324 Score: 153
Period size: 38 Copynumber: 2.9 Consensus size: 39
54943201 TATCTAAAAA
54943211 AACACCGCTAAAGGTCATGACC-TTAGCGGCGCTTTCCCAC
1 AACACCGCTAAA-GTCATGACCTTTAGCGGCGCTTT-CCAC
* *
54943251 AACATCGCTAAAAGTCATGACCTTTAGTGGC-CTTTCCAC
1 AACACCGCT-AAAGTCATGACCTTTAGCGGCGCTTTCCAC
54943290 AA-ACCCGCTAAAGTCATGACCTTTAGCGGCGCTTT
1 AACA-CCGCTAAAGTCATGACCTTTAGCGGCGCTTT
54943325 TCTTAAAAAT
Statistics
Matches: 66, Mismatches: 4, Indels: 9
0.84 0.05 0.11
Matches are distributed among these distances:
38 21 0.32
39 14 0.21
40 21 0.32
41 10 0.15
ACGTcount: A:0.26, C:0.31, G:0.18, T:0.25
Consensus pattern (39 bp):
AACACCGCTAAAGTCATGACCTTTAGCGGCGCTTTCCAC
Found at i:54943312 original size:38 final size:39
Alignment explanation
Indices: 54943210--54943324 Score: 155
Period size: 40 Copynumber: 2.9 Consensus size: 39
54943200 TTATCTAAAA
54943210 AAACACCGCTAAAGGTCATGACC-TTAGCGGCGCTTTCCC
1 AAACACCGCTAAA-GTCATGACCTTTAGCGGCGCTTTCCC
* *
54943249 ACAACATCGCTAAAAGTCATGACCTTTAGTGGC-CTTTCCAC
1 A-AACACCGCT-AAAGTCATGACCTTTAGCGGCGCTTTCC-C
54943290 AAAC-CCGCTAAAGTCATGACCTTTAGCGGCGCTTT
1 AAACACCGCTAAAGTCATGACCTTTAGCGGCGCTTT
54943325 TCTTAAAAAT
Statistics
Matches: 67, Mismatches: 4, Indels: 10
0.83 0.05 0.12
Matches are distributed among these distances:
38 20 0.30
39 9 0.13
40 26 0.39
41 12 0.18
ACGTcount: A:0.27, C:0.30, G:0.18, T:0.24
Consensus pattern (39 bp):
AAACACCGCTAAAGTCATGACCTTTAGCGGCGCTTTCCC
Found at i:54957528 original size:12 final size:12
Alignment explanation
Indices: 54957511--54957552 Score: 66
Period size: 12 Copynumber: 3.5 Consensus size: 12
54957501 ACTGACTTGG
54957511 GTCACACGACCA
1 GTCACACGACCA
*
54957523 GTCACACCACCA
1 GTCACACGACCA
*
54957535 GTCATACGACCA
1 GTCACACGACCA
54957547 GTCACA
1 GTCACA
54957553 TGCCTGTATA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
12 26 1.00
ACGTcount: A:0.33, C:0.40, G:0.14, T:0.12
Consensus pattern (12 bp):
GTCACACGACCA
Found at i:54957685 original size:18 final size:18
Alignment explanation
Indices: 54957662--54957699 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
54957652 TGACCATTGA
*
54957662 ACAACACGACTGAGACAC
1 ACAACACGACTAAGACAC
*
54957680 ACAACACGGCTAAGACAC
1 ACAACACGACTAAGACAC
54957698 AC
1 AC
54957700 GCCCATGTCC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.45, C:0.34, G:0.16, T:0.05
Consensus pattern (18 bp):
ACAACACGACTAAGACAC
Found at i:54958715 original size:42 final size:41
Alignment explanation
Indices: 54958624--54958774 Score: 153
Period size: 42 Copynumber: 3.6 Consensus size: 41
54958614 TGCCAACGTT
* * * *
54958624 CCAGACGTGGTCTTACATGTAATCAAATATCGATGCCACTGTC
1 CCAGACATGGTCTTACACGAAATCAAATA-CGATG-CAATGTC
* * *
54958667 CTAGACAAGGTCTTACACGAAATCAAATACGATGTCGATGTC
1 CCAGACATGGTCTTACACGAAATCAAATACGATG-CAATGTC
54958709 CCAGACATGGTCTTACACGTAAATCATAAGT-CGATGCCAATGTC
1 CCAGACATGGTCTTACACG-AAATCA-AA-TACGATG-CAATGTC
*
54958753 CCAGACGTGGTCTTACAC-AAAT
1 CCAGACATGGTCTTACACGAAAT
54958775 ACACATATTG
Statistics
Matches: 92, Mismatches: 13, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
42 31 0.34
43 30 0.33
44 30 0.33
45 1 0.01
ACGTcount: A:0.32, C:0.25, G:0.19, T:0.25
Consensus pattern (41 bp):
CCAGACATGGTCTTACACGAAATCAAATACGATGCAATGTC
Found at i:54962216 original size:45 final size:44
Alignment explanation
Indices: 54962143--54962313 Score: 168
Period size: 45 Copynumber: 3.8 Consensus size: 44
54962133 TGTAACCCGC
54962143 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAA-CGAACTCGGACTCAACTCAACGAGCTCGGGC-TTCGCAT
* * * *
54962189 CCATAAGTGAACTC-GACTCAACTCAACGAGCTCGGATGCCTAG-TT
1 CCATAA-CGAACTCGGACTCAACTCAACGAGCTCGG--GCTTCGCAT
* * * *
54962234 ACATTCACGAACTCGGACTCAACTCAACGAGTTC-GACATTCGCAT
1 CCA-TAACGAACTCGGACTCAACTCAACGAGCTCGGGC-TTCGCAT
* *
54962279 CCATAATGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAACGAACTCGGACTCAACTCAACGAGCTCGG
54962314 ATGCTCAACC
Statistics
Matches: 103, Mismatches: 15, Indels: 15
0.77 0.11 0.11
Matches are distributed among these distances:
43 1 0.01
44 30 0.29
45 35 0.34
46 35 0.34
47 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.20
Consensus pattern (44 bp):
CCATAACGAACTCGGACTCAACTCAACGAGCTCGGGCTTCGCAT
Found at i:54962304 original size:90 final size:91
Alignment explanation
Indices: 54962150--54962317 Score: 277
Period size: 90 Copynumber: 1.9 Consensus size: 91
54962140 CGCCCATAAG
* *
54962150 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGACTCAACTCAA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGACTCAACTCAA
54962215 CGAGCTCGGATGCCTAGTTACATTCA
66 CGAGCTCGGATGCCTAGTTACATTCA
*
54962241 CGAACTCGGACTCAACTCAACGAGTTC-GACATTCGCATCCATAA-TGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTC-GACTCAACTCA
*
54962304 ACGAGTTCGGATGC
65 ACGAGCTCGGATGC
54962318 TCAACCATCC
Statistics
Matches: 72, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
89 7 0.10
90 39 0.54
91 26 0.36
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.21
Consensus pattern (91 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATTCA
Found at i:54973841 original size:6 final size:6
Alignment explanation
Indices: 54973830--54973882 Score: 79
Period size: 6 Copynumber: 8.5 Consensus size: 6
54973820 ATAATTTAAT
*
54973830 AAATAA AAATAA AAATAA AAATCTAA AACTAA AAATAA AAATAA AAATAA
1 AAATAA AAATAA AAATAA AAA--TAA AAATAA AAATAA AAATAA AAATAA
54973880 AAA
1 AAA
54973883 ACATATAATT
Statistics
Matches: 43, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
6 38 0.88
8 5 0.12
ACGTcount: A:0.79, C:0.04, G:0.00, T:0.17
Consensus pattern (6 bp):
AAATAA
Found at i:54973862 original size:20 final size:20
Alignment explanation
Indices: 54973833--54973882 Score: 77
Period size: 20 Copynumber: 2.6 Consensus size: 20
54973823 ATTTAATAAA
54973833 TAAAAATAAAAATAAAAATC
1 TAAAAATAAAAATAAAAATC
*
54973853 TAAAACTAAAAATAAAAA--
1 TAAAAATAAAAATAAAAATC
54973871 TAAAAATAAAAA
1 TAAAAATAAAAA
54973883 ACATATAATT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
18 11 0.39
20 17 0.61
ACGTcount: A:0.78, C:0.04, G:0.00, T:0.18
Consensus pattern (20 bp):
TAAAAATAAAAATAAAAATC
Found at i:54973883 original size:26 final size:26
Alignment explanation
Indices: 54973833--54973884 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
54973823 ATTTAATAAA
**
54973833 TAAAAATAAAAATAAAAATCTAAAAC
1 TAAAAATAAAAATAAAAATAAAAAAC
54973859 TAAAAATAAAAATAAAAATAAAAAAC
1 TAAAAATAAAAATAAAAATAAAAAAC
54973885 ATATAATTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.77, C:0.06, G:0.00, T:0.17
Consensus pattern (26 bp):
TAAAAATAAAAATAAAAATAAAAAAC
Found at i:54973961 original size:9 final size:9
Alignment explanation
Indices: 54973902--54973960 Score: 82
Period size: 9 Copynumber: 6.6 Consensus size: 9
54973892 TTTATACAAA
54973902 TAATTCGGT
1 TAATTCGGT
*
54973911 TAATTCGGG
1 TAATTCGGT
54973920 TAATTCGGT
1 TAATTCGGT
*
54973929 TAATTCGAT
1 TAATTCGGT
*
54973938 TAATTCAGT
1 TAATTCGGT
*
54973947 TAATTTGGT
1 TAATTCGGT
54973956 TAATT
1 TAATT
54973961 TTATACTTAT
Statistics
Matches: 43, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
9 43 1.00
ACGTcount: A:0.27, C:0.08, G:0.19, T:0.46
Consensus pattern (9 bp):
TAATTCGGT
Found at i:54983404 original size:40 final size:39
Alignment explanation
Indices: 54983339--54983418 Score: 115
Period size: 40 Copynumber: 2.0 Consensus size: 39
54983329 TGCGGTACCT
* *
54983339 TATGGTTGTAGGGTTGGATGGGTCGATTATATCCCCACA
1 TATGGTTGCAGGGATGGATGGGTCGATTATATCCCCACA
* *
54983378 TATGGTGTGCAGGGATGGGTGGGTCGATTTTATCCCCACA
1 TATGGT-TGCAGGGATGGATGGGTCGATTATATCCCCACA
54983418 T
1 T
54983419 GGTGTGATGG
Statistics
Matches: 36, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
39 6 0.17
40 30 0.83
ACGTcount: A:0.19, C:0.16, G:0.33, T:0.33
Consensus pattern (39 bp):
TATGGTTGCAGGGATGGATGGGTCGATTATATCCCCACA
Found at i:54996391 original size:48 final size:48
Alignment explanation
Indices: 54996329--54996647 Score: 208
Period size: 48 Copynumber: 6.8 Consensus size: 48
54996319 TGTGAGTATT
* * *
54996329 GAGATCCCGTGTAAGACCATATCTGGGATATGGCATCGACATTGATAA
1 GAGATCCAGTGTAAGACCATGTCTGGGACATGGCATCGACATTGATAA
* * * *** *
54996377 GAGATCCTGCGTAAGACCCTGTCTGGGACATGGCATCGGTGTTGATAT
1 GAGATCCAGTGTAAGACCATGTCTGGGACATGGCATCGACATTGATAA
* * *
54996425 GTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACATTGATAT
1 GAGATCCAGTGTAAGACCATGTCTGGGACATGGCATCGACATTGATAA
*** * * * * * * *
54996473 TTTAGCCTGTGTAAGACCATGCCTGGGACATGGCATTGGCTTTGATAT
1 GAGATCCAGTGTAAGACCATGTCTGGGACATGGCATCGACATTGATAA
* * * ***
54996521 GTG-TGCTAGTATAAGACCATGTCTGGGACATGGCATC-AGCATTGACGT
1 GAGAT-CCAGTGTAAGACCATGTCTGGGACATGGCATCGA-CATTGATAA
* * * * *
54996569 GAGACTTC-GTATAAGACCATATCCGGG--AT---AT-GACATTGATAT
1 GAGA-TCCAGTGTAAGACCATGTCTGGGACATGGCATCGACATTGATAA
*
54996611 GTAGATTCCA-TGTAAGACCACGTCTGGGACATGGCAT
1 G-AGA-TCCAGTGTAAGACCATGTCTGGGACATGGCAT
54996648 TGGCATCTTT
Statistics
Matches: 210, Mismatches: 49, Indels: 24
0.74 0.17 0.08
Matches are distributed among these distances:
42 8 0.04
43 22 0.10
45 2 0.01
46 2 0.01
48 175 0.83
50 1 0.00
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.27
Consensus pattern (48 bp):
GAGATCCAGTGTAAGACCATGTCTGGGACATGGCATCGACATTGATAA
Found at i:54996501 original size:96 final size:96
Alignment explanation
Indices: 54996337--54996565 Score: 300
Period size: 96 Copynumber: 2.4 Consensus size: 96
54996327 TTGAGATCCC
* * * * *
54996337 GTGTAAGACCATATCTGGGATATGGCATCGACATTGATAAGAGATCCTGCGTAAGACCCTGTCTG
1 GTGTAAGACCATGTCTGGGACATGGCATCGACATTGATAAGAGAGCCTGCGTAAGACCATGCCTG
54996402 GGACATGGCATCGG-TGTTGATATGTGAGCCA
66 GGACATGGCATCGGCT-TTGATATGTGAGCCA
**** *
54996433 GTGTAAGACCATGTCTGGGACATGGCATCGACATTGATATTTTAGCCTGTGTAAGACCATGCCTG
1 GTGTAAGACCATGTCTGGGACATGGCATCGACATTGATAAGAGAGCCTGCGTAAGACCATGCCTG
* * *
54996498 GGACATGGCATTGGCTTTGATATGTGTGCTA
66 GGACATGGCATCGGCTTTGATATGTGAGCCA
*
54996529 GTATAAGACCATGTCTGGGACATGGCATC-AGCATTGA
1 GTGTAAGACCATGTCTGGGACATGGCATCGA-CATTGA
54996566 CGTGAGACTT
Statistics
Matches: 117, Mismatches: 14, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
95 1 0.01
96 115 0.98
97 1 0.01
ACGTcount: A:0.25, C:0.18, G:0.28, T:0.28
Consensus pattern (96 bp):
GTGTAAGACCATGTCTGGGACATGGCATCGACATTGATAAGAGAGCCTGCGTAAGACCATGCCTG
GGACATGGCATCGGCTTTGATATGTGAGCCA
Found at i:54996606 original size:96 final size:95
Alignment explanation
Indices: 54996340--54996606 Score: 245
Period size: 96 Copynumber: 2.8 Consensus size: 95
54996330 AGATCCCGTG
* * * * * ** * *
54996340 TAAGACCATATCTGGGATATGGCATCGACATTGATAAGAGATCCTGCGTAAGACCCTGTCTGGGA
1 TAAGACCATGTCTGGGACATGGCATCGACATTGA-ACGTGAGCCTGTATAAGACCATGCCTGGGA
* * *
54996405 CATGGCATCGG-TGTTGATATGTGAGCCAGTG
65 CATGACATTGGCT-TTGATATGTGAGCCAGTA
** * *
54996436 TAAGACCATGTCTGGGACATGGCATCGACATTGATATTTTAGCCTGTGTAAGACCATGCCTGGGA
1 TAAGACCATGTCTGGGACATGGCATCGACATTGA-ACGTGAGCCTGTATAAGACCATGCCTGGGA
* * *
54996501 CATGGCATTGGCTTTGATATGTGTGCTAGTA
65 CATGACATTGGCTTTGATATGTGAGCCAGTA
* *
54996532 TAAGACCATGTCTGGGACATGGCATC-AGCATTG-ACGTGAGACTTCGTATAAGACCATATCC-G
1 TAAGACCATGTCTGGGACATGGCATCGA-CATTGAACGTGAG-CCT-GTATAAGACCAT-GCCTG
*
54996594 GGATATGACATTG
62 GGACATGACATTG
54996607 ATATGTAGAT
Statistics
Matches: 144, Mismatches: 22, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
94 4 0.03
95 3 0.02
96 134 0.93
97 3 0.02
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.28
Consensus pattern (95 bp):
TAAGACCATGTCTGGGACATGGCATCGACATTGAACGTGAGCCTGTATAAGACCATGCCTGGGAC
ATGACATTGGCTTTGATATGTGAGCCAGTA
Found at i:55006604 original size:17 final size:18
Alignment explanation
Indices: 55006582--55006615 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
55006572 GCCATTTTCA
55006582 GACGTGTGGG-CCACACG
1 GACGTGTGGGTCCACACG
55006599 GACGTGTGGGTCCACAC
1 GACGTGTGGGTCCACAC
55006616 AGGCCGACAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 10 0.62
18 6 0.38
ACGTcount: A:0.18, C:0.29, G:0.38, T:0.15
Consensus pattern (18 bp):
GACGTGTGGGTCCACACG
Found at i:55007502 original size:32 final size:32
Alignment explanation
Indices: 55007461--55007521 Score: 81
Period size: 32 Copynumber: 1.9 Consensus size: 32
55007451 TCAAAAGAAC
55007461 CAAATGTTTTAACAA-ATTACTCAT-GAATTTA
1 CAAATGTTTTAA-AAGATTACTCATAGAATTTA
*
55007492 CAAACTGTTTTAAAAGATTCCTCATAGAAT
1 CAAA-TGTTTTAAAAGATTACTCATAGAAT
55007522 AAACGTTTTG
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
31 6 0.23
32 16 0.62
33 4 0.15
ACGTcount: A:0.41, C:0.15, G:0.08, T:0.36
Consensus pattern (32 bp):
CAAATGTTTTAAAAGATTACTCATAGAATTTA
Found at i:55009559 original size:41 final size:41
Alignment explanation
Indices: 55009500--55009685 Score: 228
Period size: 41 Copynumber: 4.5 Consensus size: 41
55009490 AGAATATTAT
* * *
55009500 TGAATTGTACATACGTGCCCCTTTTTGTACTTTGGTACCCC
1 TGAATTGCACATACGTGCCCCTATTTGTACTTCGGTACCCC
* * *
55009541 TAAATTGCACATACGTGCCTCTATTTGTACTTCAGTACCCC
1 TGAATTGCACATACGTGCCCCTATTTGTACTTCGGTACCCC
* * * *
55009582 TGAATTACACATATGTGCCCCTATTTGTACTTTGGTACCCA
1 TGAATTGCACATACGTGCCCCTATTTGTACTTCGGTACCCC
* * * * * *
55009623 TTAATTGCACATGCATGCCCCTGTTTATACTTCGATACCCC
1 TGAATTGCACATACGTGCCCCTATTTGTACTTCGGTACCCC
55009664 TGAATTGCACATACGTGCCCCT
1 TGAATTGCACATACGTGCCCCT
55009686 GTTTAAACTT
Statistics
Matches: 119, Mismatches: 26, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
41 119 1.00
ACGTcount: A:0.22, C:0.28, G:0.15, T:0.35
Consensus pattern (41 bp):
TGAATTGCACATACGTGCCCCTATTTGTACTTCGGTACCCC
Found at i:55010167 original size:13 final size:13
Alignment explanation
Indices: 55010151--55010191 Score: 61
Period size: 13 Copynumber: 3.4 Consensus size: 13
55010141 ATTTTTAAAT
55010151 TTTAGTGATAATA
1 TTTAGTGATAATA
55010164 TTTA-TGAT--TA
1 TTTAGTGATAATA
55010174 TTTAGTGATAATA
1 TTTAGTGATAATA
55010187 TTTAG
1 TTTAG
55010192 GAAAAATTTA
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
10 6 0.24
11 4 0.16
12 4 0.16
13 11 0.44
ACGTcount: A:0.34, C:0.00, G:0.15, T:0.51
Consensus pattern (13 bp):
TTTAGTGATAATA
Found at i:55011265 original size:41 final size:41
Alignment explanation
Indices: 55011220--55011364 Score: 173
Period size: 41 Copynumber: 3.5 Consensus size: 41
55011210 GCTTTATGCT
* * *
55011220 GGTGTATTTTCTCATGCTTTGTGCCTAGCAGGCTTCGTGCC
1 GGTGTATATTATCAGGCTTTGTGCCTAGCAGGCTTCGTGCC
* *
55011261 GGTGTATATTATCAGGCTTTGTGTCTAGCAAGCTTCGTGCC
1 GGTGTATATTATCAGGCTTTGTGCCTAGCAGGCTTCGTGCC
** * * * **
55011302 AATGTATATTATCAGGCTTTGTACCGAGCAGGCTTCCTATC
1 GGTGTATATTATCAGGCTTTGTGCCTAGCAGGCTTCGTGCC
*
55011343 GGTGTATATTATTAGGCTTTGT
1 GGTGTATATTATCAGGCTTTGT
55011365 TGTCGATGTA
Statistics
Matches: 87, Mismatches: 17, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
41 87 1.00
ACGTcount: A:0.17, C:0.19, G:0.25, T:0.39
Consensus pattern (41 bp):
GGTGTATATTATCAGGCTTTGTGCCTAGCAGGCTTCGTGCC
Found at i:55011414 original size:67 final size:67
Alignment explanation
Indices: 55011303--55011431 Score: 161
Period size: 67 Copynumber: 1.9 Consensus size: 67
55011293 CTTCGTGCCA
* * * *
55011303 ATGTATATTATCAGGCTTTGTACCGAGCAGGCTTCCTATCGGTGTATATTATTAGGCTTTGTTGT
1 ATGTATATTATCAGGCTTTCTACCGAGCAGGATTCCTATCGGTGTATATTATCAGACTTTGTTGT
55011368 CG
66 CG
* * * * *
55011370 ATGTATATTATTAGGCTTTCTGCCTAGCAGGATTCGT-GCTGGTGTATATTATCAGACTTTGT
1 ATGTATATTATCAGGCTTTCTACCGAGCAGGATTCCTATC-GGTGTATATTATCAGACTTTGT
55011432 GCCTAACAGG
Statistics
Matches: 52, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
66 1 0.02
67 51 0.98
ACGTcount: A:0.20, C:0.16, G:0.23, T:0.41
Consensus pattern (67 bp):
ATGTATATTATCAGGCTTTCTACCGAGCAGGATTCCTATCGGTGTATATTATCAGACTTTGTTGT
CG
Found at i:55011435 original size:41 final size:41
Alignment explanation
Indices: 55011371--55011465 Score: 120
Period size: 41 Copynumber: 2.3 Consensus size: 41
55011361 TTGTTGTCGA
* * *
55011371 TGTATATTATTAGGCTTTCTGCCTAGCAGGATTCGTGCTGG
1 TGTATATTATCAGACTTTCTGCCTAACAGGATTCGTGCTGG
* * *
55011412 TGTATATTATCAGACTTTGTGCCTAACAGGCTTCTTGCTGG
1 TGTATATTATCAGACTTTCTGCCTAACAGGATTCGTGCTGG
55011453 TGTAT-TATATCAG
1 TGTATAT-TATCAG
55011466 GTAACTTGTA
Statistics
Matches: 47, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
40 1 0.02
41 46 0.98
ACGTcount: A:0.20, C:0.17, G:0.23, T:0.40
Consensus pattern (41 bp):
TGTATATTATCAGACTTTCTGCCTAACAGGATTCGTGCTGG
Found at i:55013161 original size:64 final size:64
Alignment explanation
Indices: 55013006--55013264 Score: 197
Period size: 68 Copynumber: 3.9 Consensus size: 64
55012996 TGGATGATAC
* ** * * *
55013006 AGATAGTATGTAGCTAGGTCACATGTATGGTGCTGA-GTGCACATCATGT-GTACAAGAGAGCTA
1 AGATA-TATGTAGCTAGGTCGCATGGGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAGCTA
55013069 CAAG
63 C--G
* *
55013073 ACATTATTATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTAC
1 AGA-TA-TATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTAC
55013138 G
64 G
* * * * * * *
55013139 GGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAACAGAGCTA
1 AGATATATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTA
55013204 CG
63 CG
* * *
55013206 AGATAAACTG--GCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGT-GTACAAGAGAGC
1 AGATATA-TGTAGCTAGGTCGCATGGGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAGC
55013265 CGAACTATAT
Statistics
Matches: 155, Mismatches: 28, Indels: 22
0.76 0.14 0.11
Matches are distributed among these distances:
62 1 0.01
63 18 0.12
64 26 0.17
65 2 0.01
66 22 0.14
67 34 0.22
68 51 0.33
69 1 0.01
ACGTcount: A:0.30, C:0.17, G:0.29, T:0.24
Consensus pattern (64 bp):
AGATATATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACG
Found at i:55017908 original size:13 final size:13
Alignment explanation
Indices: 55017890--55017915 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
55017880 TTCTTCAGGA
55017890 AAAGATGAATCAT
1 AAAGATGAATCAT
55017903 AAAGATGAATCAT
1 AAAGATGAATCAT
55017916 GATATATGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.08, G:0.15, T:0.23
Consensus pattern (13 bp):
AAAGATGAATCAT
Found at i:55023039 original size:25 final size:25
Alignment explanation
Indices: 55022992--55023039 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
55022982 TTATAATATG
* * * *
55022992 AAAATGACCGTTTTGCCCTTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
55023017 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
55023040 GTTTAAATAT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.33, C:0.23, G:0.17, T:0.27
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:55023123 original size:11 final size:11
Alignment explanation
Indices: 55023087--55023142 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
55023077 CATGGTATGT
55023087 ATGATATGCAC
1 ATGATATGCAC
* *
55023098 ATGACATG--T
1 ATGATATGCAC
55023107 ATGATATGCAC
1 ATGATATGCAC
*
55023118 ATGATATG--T
1 ATGATATGCAC
55023127 ATGATATGCAC
1 ATGATATGCAC
55023138 ATGAT
1 ATGAT
55023143 GTATTCATAA
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:55023142 original size:20 final size:20
Alignment explanation
Indices: 55023076--55023142 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
55023066 ATTTTGATAA
*
55023076 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
*
55023096 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
55023116 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
55023136 ACATGAT
1 ACATGAT
55023143 GTATTCATAA
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.34, C:0.12, G:0.21, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:55023221 original size:25 final size:25
Alignment explanation
Indices: 55023193--55023321 Score: 167
Period size: 25 Copynumber: 5.2 Consensus size: 25
55023183 AGGAAGTGTA
55023193 AAAGGGCTTATGCCCCAGTTATGAT
1 AAAGGGCTTATGCCCCAGTTATGAT
55023218 AAAGGGCTTATGCCCCAGTTATGAT
1 AAAGGGCTTATGCCCCAGTTATGAT
*
55023243 AAAGGGCTTATGCCCCAGTTATTA-
1 AAAGGGCTTATGCCCCAGTTATGAT
*
55023267 AAAGGGCTT-TGCCCCAGTTATTA-
1 AAAGGGCTTATGCCCCAGTTATGAT
*
55023290 AAAGAGGC-TAGGCCTCCAGTTATATGAT
1 AAAG-GGCTTATGCC-CCAG-T-TATGAT
55023318 AAAG
1 AAAG
55023322 CAGCTATGCT
Statistics
Matches: 95, Mismatches: 3, Indels: 9
0.89 0.03 0.08
Matches are distributed among these distances:
23 19 0.20
24 15 0.16
25 52 0.55
26 1 0.01
27 4 0.04
28 4 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.27
Consensus pattern (25 bp):
AAAGGGCTTATGCCCCAGTTATGAT
Found at i:55023541 original size:31 final size:31
Alignment explanation
Indices: 55023506--55023569 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
55023496 TGTTTACAGT
55023506 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
55023537 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
55023568 AA
1 AA
55023570 TATGAAAAGG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.38, C:0.16, G:0.23, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:55026538 original size:70 final size:70
Alignment explanation
Indices: 55026405--55026539 Score: 218
Period size: 70 Copynumber: 1.9 Consensus size: 70
55026395 TAGTTTATTA
* * * *
55026405 CTAATTAATTTGCTGCTGTAATGCTGTAAATTATTGGCTGTCCAAATTAGGAAAAATTTATGGTG
1 CTAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTATCCAAATTAGGAAAAATTCATGGTG
55026470 CTTAG
66 CTTAG
55026475 CTAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTATCCAAATTAGGACAAAA-TCATGGT
1 CTAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTATCCAAATTAGGA-AAAATTCATGGT
55026539 G
65 G
55026540 TTATGTGCTA
Statistics
Matches: 60, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
70 56 0.93
71 4 0.07
ACGTcount: A:0.33, C:0.13, G:0.19, T:0.36
Consensus pattern (70 bp):
CTAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTATCCAAATTAGGAAAAATTCATGGTG
CTTAG
Found at i:55027369 original size:43 final size:43
Alignment explanation
Indices: 55027311--55027482 Score: 224
Period size: 43 Copynumber: 4.0 Consensus size: 43
55027301 TATCGAAATG
55027311 TGATATACGGGCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAA
1 TGATAT-CGGGCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAA
* * *
55027355 TGATATCGGGCTTCGAACCTAGCAGGCTATAATGCTGGTGAGA
1 TGATATCGGGCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAA
* * *
55027398 TAATATCGGGCCTC-AGGCCTAGCAGGCTATAATGCTGGTGAAA
1 TGATATCGGGCTTCGA-GCCTAGCAGGCTATAATGCCGGTGAAA
* *
55027441 TGATATAGGGCTTCAAGCCTAGCAGG-TGA-AATGCCGGTGAAA
1 TGATATCGGGCTTCGAGCCTAGCAGGCT-ATAATGCCGGTGAAA
55027483 GAAAGGCTTC
Statistics
Matches: 114, Mismatches: 11, Indels: 8
0.86 0.08 0.06
Matches are distributed among these distances:
42 14 0.12
43 93 0.82
44 7 0.06
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.23
Consensus pattern (43 bp):
TGATATCGGGCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAA
Found at i:55029233 original size:57 final size:57
Alignment explanation
Indices: 55029127--55029272 Score: 161
Period size: 57 Copynumber: 2.6 Consensus size: 57
55029117 GAATTCCTTG
* * * * **
55029127 TTCATTTCTAAATGAATTCATTTAT-CATTTCCATTTCCATTTTGGAGAAAACCACA
1 TTCATTTCCAAATGATTTTATTTCTCCATTTCCATTTCCATTTTCAAGAAAACCACA
* * **
55029183 TTCATTTCCAAATGATTTTATTTCTCCATTTTCATTTTCATTTTCAAGAAAACCTTA
1 TTCATTTCCAAATGATTTTATTTCTCCATTTCCATTTCCATTTTCAAGAAAACCACA
*
55029240 ATCATTTCCAAATG-TTTCCTATTTCTCCATTTC
1 TTCATTTCCAAATGATTT--TATTTCTCCATTTC
55029273 GCCATTTCTA
Statistics
Matches: 75, Mismatches: 12, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
56 24 0.32
57 38 0.51
58 13 0.17
ACGTcount: A:0.28, C:0.21, G:0.05, T:0.46
Consensus pattern (57 bp):
TTCATTTCCAAATGATTTTATTTCTCCATTTCCATTTCCATTTTCAAGAAAACCACA
Found at i:55032794 original size:46 final size:44
Alignment explanation
Indices: 55032729--55032890 Score: 132
Period size: 46 Copynumber: 3.5 Consensus size: 44
55032719 GTGTCGATGC
*
55032729 CATGTCCCAGACACGGTCTTACACTGGCTCATATCTCAAGTCGAAG
1 CATGTCCCAGACA-TGTCTTACACTGGCTCATATCTCAAG-CGAAG
* *
55032775 CATGTCCCAGACATTGTCTTACACTGACTATCATATCGT--AGCCAATG
1 CATGTCCCAGACA-TGTCTTACACTGGC--TCATATC-TCAAGCGAA-G
* * * * * *
55032822 CATGACCCAGGCATGTCTTACACTAGCTTACTA-CCCAAGGCGGATG
1 CATGTCCCAGACATGTCTTACACTGGCTCA-TATCTCAA-GC-GAAG
55032868 CATGTCCCAGACATGTCTTACAC
1 CATGTCCCAGACATGTCTTACAC
55032891 AAGCACTCGT
Statistics
Matches: 93, Mismatches: 14, Indels: 18
0.74 0.11 0.14
Matches are distributed among these distances:
44 3 0.03
45 3 0.03
46 64 0.69
47 15 0.16
48 7 0.08
49 1 0.01
ACGTcount: A:0.27, C:0.30, G:0.18, T:0.25
Consensus pattern (44 bp):
CATGTCCCAGACATGTCTTACACTGGCTCATATCTCAAGCGAAG
Found at i:55042293 original size:46 final size:46
Alignment explanation
Indices: 55042226--55042400 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
55042216 TGTAACCCGC
55042226 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCAT
*
55042272 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--G-C-A-TTCGCAT
* * * **
55042322 CTCA-CA---AACTCAGACTCAACTCAACGAGTTCGAACATTCGCAT
1 C-CATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCAT
*
55042365 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
55042401 ATGCTCAACC
Statistics
Matches: 108, Mismatches: 10, Indels: 22
0.77 0.07 0.16
Matches are distributed among these distances:
42 4 0.04
43 6 0.06
44 1 0.01
46 61 0.56
47 24 0.22
48 1 0.01
49 1 0.01
50 6 0.06
51 4 0.04
ACGTcount: A:0.31, C:0.30, G:0.19, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCAT
Found at i:55042343 original size:93 final size:93
Alignment explanation
Indices: 55042235--55042404 Score: 295
Period size: 93 Copynumber: 1.8 Consensus size: 93
55042225 CCCATAAGTG
* **
55042235 AACTCGGACTCAACTCAACGAGCTCGGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 AACTCAGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
55042300 GAGCTCGGATGCCTAGTTACATCTCACA
66 GAGCTCGGATGCCTAGTTACATCTCACA
*
55042328 AACTCAGACTCAACTCAACGAGTTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 AACTCAGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
*
55042393 GAGTTCGGATGC
66 GAGCTCGGATGC
55042405 TCAACCATCC
Statistics
Matches: 72, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.31, C:0.30, G:0.19, T:0.21
Consensus pattern (93 bp):
AACTCAGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
GAGCTCGGATGCCTAGTTACATCTCACA
Found at i:55042992 original size:20 final size:18
Alignment explanation
Indices: 55042958--55042994 Score: 56
Period size: 20 Copynumber: 1.9 Consensus size: 18
55042948 GCAACTCATA
55042958 ATTTCAACTATTTTACAC
1 ATTTCAACTATTTTACAC
55042976 ATTTACAACTCATTTTACA
1 ATTT-CAACT-ATTTTACA
55042995 ACTTAGCAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 4 0.24
19 5 0.29
20 8 0.47
ACGTcount: A:0.35, C:0.22, G:0.00, T:0.43
Consensus pattern (18 bp):
ATTTCAACTATTTTACAC
Found at i:55045551 original size:79 final size:82
Alignment explanation
Indices: 55045440--55045624 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
55045430 GCTACTCGTT
* * *
55045440 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAATTGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
55045503 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
55045520 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
55045583 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
55045600 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
55045625 CATCATTCAA
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.59
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:55045624 original size:40 final size:40
Alignment explanation
Indices: 55045421--55045624 Score: 229
Period size: 40 Copynumber: 5.1 Consensus size: 40
55045411 CGGAGTTTAA
** *
55045421 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
55045461 CCGGTTATAGTAACTCGCACAATTGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
55045501 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
55045540 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
55045580 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
55045620 CCGGA
1 CCGGA
55045625 CATCATTCAA
Statistics
Matches: 139, Mismatches: 18, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.24
40 92 0.66
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:55053745 original size:39 final size:40
Alignment explanation
Indices: 55053628--55053812 Score: 207
Period size: 40 Copynumber: 4.7 Consensus size: 40
55053618 GCTACTCGTT
*
55053628 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
* *
55053668 CAATTGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
55053708 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * * *
55053747 CAAATGCCTTC-GGATCTTAGTCCGAATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
*
55053788 CAAA-GCCTTCGGGACTTAGCTCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
55053813 CATCATTCAA
Statistics
Matches: 122, Mismatches: 18, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
38 2 0.02
39 33 0.27
40 74 0.61
41 13 0.11
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:55058351 original size:43 final size:43
Alignment explanation
Indices: 55058290--55058371 Score: 146
Period size: 43 Copynumber: 1.9 Consensus size: 43
55058280 TTCAACGAAC
*
55058290 TCGTACACTTAGTGCCAATTAATTAGCCAAGGCTATAATTGTA
1 TCGTACACTTAGCGCCAATTAATTAGCCAAGGCTATAATTGTA
*
55058333 TCGTACACTTAGCGCCAATTAATTAGCCGAGGCTATAAT
1 TCGTACACTTAGCGCCAATTAATTAGCCAAGGCTATAAT
55058372 ATCGCACACA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 37 1.00
ACGTcount: A:0.32, C:0.21, G:0.17, T:0.30
Consensus pattern (43 bp):
TCGTACACTTAGCGCCAATTAATTAGCCAAGGCTATAATTGTA
Found at i:55058390 original size:40 final size:41
Alignment explanation
Indices: 55058294--55058396 Score: 136
Period size: 43 Copynumber: 2.5 Consensus size: 41
55058284 ACGAACTCGT
*
55058294 ACACTTAGTGCCAATTAATTAGCCAAGGCTATAATTGTATCGT
1 ACACTTAGTGCCAATTAATTAGCCAAGGCTATAA-T-TATCGC
* *
55058337 ACACTTAGCGCCAATTAATTAGCCGAGGCTATAA-TATCGC
1 ACACTTAGTGCCAATTAATTAGCCAAGGCTATAATTATCGC
* *
55058377 ACACATAGTGCCAATCAATT
1 ACACTTAGTGCCAATTAATT
55058397 CAAACGAACT
Statistics
Matches: 54, Mismatches: 6, Indels: 3
0.86 0.10 0.05
Matches are distributed among these distances:
40 22 0.41
43 32 0.59
ACGTcount: A:0.34, C:0.22, G:0.16, T:0.28
Consensus pattern (41 bp):
ACACTTAGTGCCAATTAATTAGCCAAGGCTATAATTATCGC
Found at i:55064849 original size:43 final size:43
Alignment explanation
Indices: 55064801--55064953 Score: 227
Period size: 43 Copynumber: 3.6 Consensus size: 43
55064791 TTCAACGAAC
*
55064801 TCGCACACTTAGTGCCAATTAATTAGCTGAAACTATAATTGTA
1 TCGCACACTTAGTGCCAATTAATTAGCTGAAGCTATAATTGTA
*
55064844 TCGCACACTTAGTGCTAATTAATTAGCT-AAGGCTATAATTGTA
1 TCGCACACTTAGTGCCAATTAATTAGCTGAA-GCTATAATTGTA
* * * *
55064887 CCACACACTTAGTGCCAATTAATTAGATGAGGCTATAATTGTA
1 TCGCACACTTAGTGCCAATTAATTAGCTGAAGCTATAATTGTA
*
55064930 TCGTACACTTAGTGCCAATTAATT
1 TCGCACACTTAGTGCCAATTAATT
55064954 CAACCGAACT
Statistics
Matches: 98, Mismatches: 10, Indels: 4
0.88 0.09 0.04
Matches are distributed among these distances:
42 2 0.02
43 95 0.97
44 1 0.01
ACGTcount: A:0.33, C:0.18, G:0.15, T:0.33
Consensus pattern (43 bp):
TCGCACACTTAGTGCCAATTAATTAGCTGAAGCTATAATTGTA
Found at i:55066199 original size:6 final size:6
Alignment explanation
Indices: 55066181--55066268 Score: 74
Period size: 6 Copynumber: 14.3 Consensus size: 6
55066171 AAGAAACATT
* *
55066181 ATCAGA A-CTAGA ATCAGA ATTAGA ATCAGA ATCAG- GTGACAGA ATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA
* *
55066230 ATCAGA ATCAGT ATCAGGTA AT-AGA ATCAAA ATCAGA AT
1 ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA AT
55066269 GTGAATGCAA
Statistics
Matches: 66, Mismatches: 8, Indels: 16
0.73 0.09 0.18
Matches are distributed among these distances:
5 5 0.08
6 52 0.79
7 6 0.09
8 3 0.05
ACGTcount: A:0.48, C:0.14, G:0.18, T:0.20
Consensus pattern (6 bp):
ATCAGA
Found at i:55066228 original size:31 final size:31
Alignment explanation
Indices: 55066190--55066268 Score: 113
Period size: 31 Copynumber: 2.5 Consensus size: 31
55066180 TATCAGAACT
* *
55066190 AGAATCAGAATTAGAATCAGAATCAGGTGAC
1 AGAATCAGAATCAGAATCAGAATCAGGTAAC
* *
55066221 AGAATCAGAATCAGAATCAGTATCAGGTAAT
1 AGAATCAGAATCAGAATCAGAATCAGGTAAC
*
55066252 AGAATCAAAATCAGAAT
1 AGAATCAGAATCAGAAT
55066269 GTGAATGCAA
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 43 1.00
ACGTcount: A:0.48, C:0.13, G:0.19, T:0.20
Consensus pattern (31 bp):
AGAATCAGAATCAGAATCAGAATCAGGTAAC
Found at i:55066255 original size:25 final size:23
Alignment explanation
Indices: 55066195--55066265 Score: 72
Period size: 25 Copynumber: 2.9 Consensus size: 23
55066185 GAACTAGAAT
55066195 CAGAATTAGAATCAGAATCAGGTGA
1 CAGAA-TAGAATCAGAATCA-GTGA
55066220 CAGAATCAGAATCAGAATCAGT-A
1 CAGAAT-AGAATCAGAATCAGTGA
*
55066243 TCAGGTAATAGAATCAAAATCAG
1 -CA-G-AATAGAATCAGAATCAG
55066266 AATGTGAATG
Statistics
Matches: 41, Mismatches: 1, Indels: 8
0.82 0.02 0.16
Matches are distributed among these distances:
23 1 0.02
24 5 0.12
25 32 0.78
26 3 0.07
ACGTcount: A:0.46, C:0.14, G:0.20, T:0.20
Consensus pattern (23 bp):
CAGAATAGAATCAGAATCAGTGA
Found at i:55066424 original size:27 final size:26
Alignment explanation
Indices: 55066386--55066493 Score: 99
Period size: 27 Copynumber: 4.0 Consensus size: 26
55066376 AGCATGGCTG
* * *
55066386 CCAGAATAGATATTGTGATAGAGTCA
1 CCAGAACAGATATTGTGACAGAGCCA
* *
55066412 CCAGATACAGATATTTTGGCAGAGCCA
1 CCAGA-ACAGATATTGTGACAGAGCCA
* *
55066439 CCAGAACAGATATTTGTGGCATAGCCA
1 CCAGAACAGATA-TTGTGACAGAGCCA
* * *
55066466 CCAGAATCAGATAATGTGGCAAAGCCA
1 CCAGAA-CAGATATTGTGACAGAGCCA
55066493 C
1 C
55066494 TTAATAGAAT
Statistics
Matches: 70, Mismatches: 9, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
26 12 0.17
27 52 0.74
28 6 0.09
ACGTcount: A:0.36, C:0.20, G:0.22, T:0.21
Consensus pattern (26 bp):
CCAGAACAGATATTGTGACAGAGCCA
Found at i:55067319 original size:27 final size:27
Alignment explanation
Indices: 55067057--55067333 Score: 331
Period size: 27 Copynumber: 10.3 Consensus size: 27
55067047 GGGGCAAAAT
* * *
55067057 GGTAATTTTACCCCAC-GAGGGTATCTC
1 GGTAATTCTACCCTACAG-GGGTATTTC
55067084 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
55067111 GATAATTCTACCATACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
55067138 GATAATTCTACCTTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
55067165 AGTAATTCTACCCTAGAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
55067192 GATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * * * *
55067219 AGTAATTTTACCATATAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
*
55067246 GGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
55067273 AGTAATTCTGCACTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
55067300 GGTAATTCTACCCTATAGGGTTCTTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
55067327 GGTAATT
1 GGTAATT
55067334 TTGTAAATCG
Statistics
Matches: 215, Mismatches: 34, Indels: 2
0.86 0.14 0.01
Matches are distributed among these distances:
27 214 1.00
28 1 0.00
ACGTcount: A:0.25, C:0.18, G:0.21, T:0.36
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:55067357 original size:27 final size:27
Alignment explanation
Indices: 55067327--55067403 Score: 82
Period size: 27 Copynumber: 2.9 Consensus size: 27
55067317 GGGTTCTTTC
55067327 GGTAATTTTGTAAATCGAGGGTAAAAT
1 GGTAATTTTGTAAATCGAGGGTAAAAT
* * ***
55067354 GGTAATTCTGTAAATCAAGGGTACTTT
1 GGTAATTTTGTAAATCGAGGGTAAAAT
** *
55067381 GGTAATTTTACAAGTCGAGGGTA
1 GGTAATTTTGTAAATCGAGGGTA
55067404 TTTCAATAAT
Statistics
Matches: 40, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
27 40 1.00
ACGTcount: A:0.32, C:0.08, G:0.26, T:0.34
Consensus pattern (27 bp):
GGTAATTTTGTAAATCGAGGGTAAAAT
Found at i:55067455 original size:52 final size:53
Alignment explanation
Indices: 55067365--55067512 Score: 147
Period size: 52 Copynumber: 2.8 Consensus size: 53
55067355 GTAATTCTGT
* * * * *
55067365 AAATCAAGGGTACTTTGGTAATTTTACAAGTCGAGGGTATTTCAATAATTTTGC
1 AAATCAGGGGTACTTTGGTAATTTTAAAACTAG-GGGTATTTCAATAATTTTAC
***
55067419 -AATCAGGGGTA-TTTGGTAATTTTATAAACTAGGGGTATTTTGGTAATTTTAC
1 AAATCAGGGGTACTTTGGTAATTTTA-AAACTAGGGGTATTTCAATAATTTTAC
* * * *
55067471 AAACCAGTGGTATTTTGGTAATTTTACAAACCAGGGGTATTT
1 AAATCAGGGGTACTTTGGTAATTTTA-AAACTAGGGGTATTT
55067513 TGGTGATTTT
Statistics
Matches: 79, Mismatches: 12, Indels: 6
0.81 0.12 0.06
Matches are distributed among these distances:
52 29 0.37
53 23 0.29
54 27 0.34
ACGTcount: A:0.30, C:0.09, G:0.22, T:0.39
Consensus pattern (53 bp):
AAATCAGGGGTACTTTGGTAATTTTAAAACTAGGGGTATTTCAATAATTTTAC
Found at i:55067461 original size:79 final size:81
Alignment explanation
Indices: 55067353--55067548 Score: 229
Period size: 79 Copynumber: 2.4 Consensus size: 81
55067343 GAGGGTAAAA
* * * * *
55067353 TGGTAATTCTGTAAA-TCAAGGGTACTTTGGTAATTTTACAAGTCGAG-GGTATTTCAATAATTT
1 TGGTAATTTTATAAACT-AAGGGTATTTTGGTAATTTTACAA-ACCAGTGGTATTTCAATAATTT
* *
55067416 TGC-AATCAGGGGTA-TT
64 TACAAACCAGGGGTATTT
* ***
55067432 TGGTAATTTTATAAACTAGGGGTATTTTGGTAATTTTACAAACCAGTGGTATTTTGGTAATTTTA
1 TGGTAATTTTATAAACTAAGGGTATTTTGGTAATTTTACAAACCAGTGGTATTTCAATAATTTTA
55067497 CAAACCAGGGGTATTT
66 CAAACCAGGGGTATTT
* *
55067513 TGGTGATTTTATAAACTAAGGGTATTTTAGTAATTT
1 TGGTAATTTTATAAACTAAGGGTATTTTGGTAATTT
55067549 GGTAAACTAA
Statistics
Matches: 99, Mismatches: 14, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
78 3 0.03
79 50 0.51
80 11 0.11
81 35 0.35
ACGTcount: A:0.30, C:0.08, G:0.21, T:0.41
Consensus pattern (81 bp):
TGGTAATTTTATAAACTAAGGGTATTTTGGTAATTTTACAAACCAGTGGTATTTCAATAATTTTA
CAAACCAGGGGTATTT
Found at i:55067466 original size:27 final size:27
Alignment explanation
Indices: 55067423--55067557 Score: 173
Period size: 27 Copynumber: 5.0 Consensus size: 27
55067413 TTTTGCAATC
55067423 AGGGGTA-TTTGGTAATTTTATAAACT
1 AGGGGTATTTTGGTAATTTTATAAACT
* *
55067449 AGGGGTATTTTGGTAATTTTACAAACC
1 AGGGGTATTTTGGTAATTTTATAAACT
* * *
55067476 AGTGGTATTTTGGTAATTTTACAAACC
1 AGGGGTATTTTGGTAATTTTATAAACT
*
55067503 AGGGGTATTTTGGTGATTTTATAAACT
1 AGGGGTATTTTGGTAATTTTATAAACT
* * **
55067530 AAGGGTATTTTAGTAATTTGGTAAACT
1 AGGGGTATTTTGGTAATTTTATAAACT
55067557 A
1 A
55067558 AAGTATTCTA
Statistics
Matches: 96, Mismatches: 12, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
26 7 0.07
27 89 0.93
ACGTcount: A:0.30, C:0.07, G:0.22, T:0.41
Consensus pattern (27 bp):
AGGGGTATTTTGGTAATTTTATAAACT
Found at i:55067507 original size:54 final size:53
Alignment explanation
Indices: 55067371--55067548 Score: 173
Period size: 54 Copynumber: 3.3 Consensus size: 53
55067361 CTGTAAATCA
* ** *** * *
55067371 AGGGTACTTTGGTAATTTTACAAGTC-GAGGGTATTTCAATAATTTTGC-AATC
1 AGGGTATTTTGGTAATTTTACAAACCAG-GGGTATTTTGGTAATTTTACAAACC
* *
55067423 AGGGGTA-TTTGGTAATTTTATAAACTAGGGGTATTTTGGTAATTTTACAAACC
1 A-GGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAACC
* * *
55067476 AGTGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTGATTTTATAAACTA
1 AG-GGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAAC-C
*
55067531 AGGGTATTTTAGTAATTT
1 AGGGTATTTTGGTAATTT
55067549 GGTAAACTAA
Statistics
Matches: 105, Mismatches: 15, Indels: 10
0.81 0.12 0.08
Matches are distributed among these distances:
52 33 0.31
53 14 0.13
54 56 0.53
55 2 0.02
ACGTcount: A:0.29, C:0.08, G:0.22, T:0.41
Consensus pattern (53 bp):
AGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAACC
Found at i:55069514 original size:6 final size:6
Alignment explanation
Indices: 55069496--55069583 Score: 65
Period size: 6 Copynumber: 14.3 Consensus size: 6
55069486 AAGAAACATT
* *
55069496 ATCAGA A-CTAGA ATCAGA ATCAGA ATCAGA ATTAG- GTGACAGA ATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA
* * *
55069545 ATCAGA ATCAGT ATTAGGTA A-CAGA ATCAAA ATCAGA AT
1 ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA AT
55069584 GTGAATGCAA
Statistics
Matches: 64, Mismatches: 10, Indels: 16
0.71 0.11 0.18
Matches are distributed among these distances:
5 4 0.06
6 53 0.83
7 5 0.08
8 2 0.03
ACGTcount: A:0.48, C:0.14, G:0.18, T:0.20
Consensus pattern (6 bp):
ATCAGA
Found at i:55069541 original size:31 final size:31
Alignment explanation
Indices: 55069505--55069583 Score: 131
Period size: 31 Copynumber: 2.5 Consensus size: 31
55069495 TATCAGAACT
*
55069505 AGAATCAGAATCAGAATCAGAATTAGGTGAC
1 AGAATCAGAATCAGAATCAGAATTAGGTAAC
*
55069536 AGAATCAGAATCAGAATCAGTATTAGGTAAC
1 AGAATCAGAATCAGAATCAGAATTAGGTAAC
*
55069567 AGAATCAAAATCAGAAT
1 AGAATCAGAATCAGAAT
55069584 GTGAATGCAA
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 45 1.00
ACGTcount: A:0.48, C:0.13, G:0.19, T:0.20
Consensus pattern (31 bp):
AGAATCAGAATCAGAATCAGAATTAGGTAAC
Found at i:55069750 original size:27 final size:26
Alignment explanation
Indices: 55069703--55069808 Score: 104
Period size: 27 Copynumber: 4.0 Consensus size: 26
55069693 CATGGCTGCT
* ** *
55069703 AGAACAGATATTGTGATAGAGTCACC
1 AGAACAGATATTTTGGCAGAGCCACC
55069729 AGATACAGATATTTTGGCAGAGCCACC
1 AGA-ACAGATATTTTGGCAGAGCCACC
* *
55069756 AGAATAGATATTTGTGGCATAGCCACC
1 AGAACAGATATTT-TGGCAGAGCCACC
* * *
55069783 AGAATCAGATAATGTGGCAAAGCCAC
1 AGAA-CAGATATTTTGGCAGAGCCAC
55069809 TTAACAGAAT
Statistics
Matches: 67, Mismatches: 10, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
26 12 0.18
27 49 0.73
28 6 0.09
ACGTcount: A:0.37, C:0.19, G:0.23, T:0.22
Consensus pattern (26 bp):
AGAACAGATATTTTGGCAGAGCCACC
Found at i:55070402 original size:27 final size:27
Alignment explanation
Indices: 55070372--55070600 Score: 241
Period size: 27 Copynumber: 8.5 Consensus size: 27
55070362 CCCCACGAGA
*
55070372 GTATCTCAGTAATTCTACCCTACAGGG
1 GTATTTCAGTAATTCTACCCTACAGGG
* *
55070399 GTATTT-TGATAATTCTACCTTACAGGG
1 GTATTTCAG-TAATTCTACCCTACAGGG
*
55070426 GTATTTCAGTAATTCTACCCTAGAGGG
1 GTATTTCAGTAATTCTACCCTACAGGG
* *
55070453 GTATTTC-GATGATTCTACCCTACAGGT
1 GTATTTCAG-TAATTCTACCCTACAGGG
* *
55070480 GTATTTCAGTAATTCTACCATACTGGG
1 GTATTTCAGTAATTCTACCCTACAGGG
** *
55070507 GTATTTTGGTAATTCTACCCTATAGGG
1 GTATTTCAGTAATTCTACCCTACAGGG
* *
55070534 GTATTT-GGTAATTCTGCCCTACAGGG
1 GTATTTCAGTAATTCTACCCTACAGGG
* * *
55070560 GTATTTC-GATAATTTTACCTTATAGGG
1 GTATTTCAG-TAATTCTACCCTACAGGG
* *
55070587 TTCTTTCAGTAATT
1 GTATTTCAGTAATT
55070601 TTGTAAATTG
Statistics
Matches: 169, Mismatches: 26, Indels: 14
0.81 0.12 0.07
Matches are distributed among these distances:
26 27 0.16
27 139 0.82
28 3 0.02
ACGTcount: A:0.24, C:0.18, G:0.20, T:0.38
Consensus pattern (27 bp):
GTATTTCAGTAATTCTACCCTACAGGG
Found at i:55070412 original size:54 final size:54
Alignment explanation
Indices: 55070372--55070600 Score: 289
Period size: 54 Copynumber: 4.3 Consensus size: 54
55070362 CCCCACGAGA
* * *
55070372 GTATCTCAGTAATTCTACCCTACAGGGGTATTTTGATAATTCTACCTTACAGGG
1 GTATTTCAGTAATTCTACCCTACAGGGGTATTTCGATAATTCTACCCTACAGGG
* * *
55070426 GTATTTCAGTAATTCTACCCTAGAGGGGTATTTCGATGATTCTACCCTACAGGT
1 GTATTTCAGTAATTCTACCCTACAGGGGTATTTCGATAATTCTACCCTACAGGG
* * * * *
55070480 GTATTTCAGTAATTCTACCATACTGGGGTATTTTGGTAATTCTACCCTATAGGG
1 GTATTTCAGTAATTCTACCCTACAGGGGTATTTCGATAATTCTACCCTACAGGG
* * * * *
55070534 GTATTT-GGTAATTCTGCCCTACAGGGGTATTTCGATAATTTTACCTTATAGGG
1 GTATTTCAGTAATTCTACCCTACAGGGGTATTTCGATAATTCTACCCTACAGGG
* *
55070587 TTCTTTCAGTAATT
1 GTATTTCAGTAATT
55070601 TTGTAAATTG
Statistics
Matches: 149, Mismatches: 25, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
53 43 0.29
54 106 0.71
ACGTcount: A:0.24, C:0.18, G:0.20, T:0.38
Consensus pattern (54 bp):
GTATTTCAGTAATTCTACCCTACAGGGGTATTTCGATAATTCTACCCTACAGGG
Found at i:55070476 original size:81 final size:80
Alignment explanation
Indices: 55070381--55070600 Score: 280
Period size: 81 Copynumber: 2.7 Consensus size: 80
55070371 AGTATCTCAG
55070381 TAATTCTACCCTACAGGGGTATTTTGATAATTCTACCTTACAGGGGTATTTCAGTAATTCTACCC
1 TAATTCTACCCTACAGGGGTATTTTGATAATTCTACCTTACAGGGGTATTTCAGTAATTCTACCC
55070446 TAGAGGGGTATTTCGA
66 TAGAGGGGTATTT-GA
* * * * * **
55070462 TGATTCTACCCTACAGGTGTA-TTTCAGTAATTCTACCATACTGGGGTATTTTGGTAATTCTACC
1 TAATTCTACCCTACAGGGGTATTTTGA-TAATTCTACCTTACAGGGGTATTTCAGTAATTCTACC
* *
55070526 CTATAGGGGTATTTGG
65 CTAGAGGGGTATTTGA
* * * * * *
55070542 TAATTCTGCCCTACAGGGGTATTTCGATAATTTTACCTTATAGGGTTCTTTCAGTAATT
1 TAATTCTACCCTACAGGGGTATTTTGATAATTCTACCTTACAGGGGTATTTCAGTAATT
55070601 TTGTAAATTG
Statistics
Matches: 115, Mismatches: 22, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
80 47 0.41
81 68 0.59
ACGTcount: A:0.24, C:0.18, G:0.20, T:0.39
Consensus pattern (80 bp):
TAATTCTACCCTACAGGGGTATTTTGATAATTCTACCTTACAGGGGTATTTCAGTAATTCTACCC
TAGAGGGGTATTTGA
Found at i:55070624 original size:107 final size:108
Alignment explanation
Indices: 55070372--55070629 Score: 243
Period size: 107 Copynumber: 2.4 Consensus size: 108
55070362 CCCCACGAGA
* ** * *** * *
55070372 GTATCTCAGTAATTCTACCCTACAGGGGTATTTTGATAATTCTACCTTACAGGGGTATTTCAGTA
1 GTATTTCAGTAATTCTACCAAACTGGGGTAAAATGGTAATTCTACCCTACAGGGGTATTTCAGTA
* *
55070437 ATTCTACCCTAGAGGGGTATTTCGATGATTCTACCCTACAGGT
66 ATTCTACCCTACAGGGGTATTTCGATAATTCTACCCTACAGGT
* *** * *
55070480 GTATTTCAGTAATTCTACCATACTGGGGTATTTTGGTAATTCTACCCTATAGGGGTATTT-GGTA
1 GTATTTCAGTAATTCTACCAAACTGGGGTAAAATGGTAATTCTACCCTACAGGGGTATTTCAGTA
* * * *
55070544 ATTCTGCCCTACAGGGGTATTTCGATAATTTTACCTTATAGG-
66 ATTCTACCCTACAGGGGTATTTCGATAATTCTACCCTACAGGT
* *** *
55070586 GTTCTTTCAGTAATT-TTGTAAATTGAGGGTAAAATGGTAATTCT
1 G-TATTTCAGTAATTCTACCAAACTG-GGGTAAAATGGTAATTCT
55070630 GTAAATCAAG
Statistics
Matches: 126, Mismatches: 22, Indels: 5
0.82 0.14 0.03
Matches are distributed among these distances:
106 6 0.05
107 66 0.52
108 54 0.43
ACGTcount: A:0.25, C:0.16, G:0.20, T:0.38
Consensus pattern (108 bp):
GTATTTCAGTAATTCTACCAAACTGGGGTAAAATGGTAATTCTACCCTACAGGGGTATTTCAGTA
ATTCTACCCTACAGGGGTATTTCGATAATTCTACCCTACAGGT
Found at i:55070708 original size:53 final size:54
Alignment explanation
Indices: 55070632--55070816 Score: 167
Period size: 54 Copynumber: 3.4 Consensus size: 54
55070622 GTAATTCTGT
* * * * *
55070632 AAATCAAGGGTACTTCGGTAATTTTAC-AAGTTGAGAGTATTTTAATAATTTTAC
1 AAATCAGGGGTATTTTGGTAATTTTACAAACTAG-GAGTATTTTAATAATTTTAC
* * **
55070686 -AATCAGGGGTATTTTGGTAATTTTATAAACTAGGGGTATTTTTGTAATTTTAC
1 AAATCAGGGGTATTTTGGTAATTTTACAAACTAGGAGTATTTTAATAATTTTAC
* * * * ** * *
55070739 AAACCAGTGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTGATTTTAT
1 AAATCAGGGGTATTTTGGTAATTTTACAAACTAGGAGTATTTTAATAATTTTAC
* * *
55070793 AAACCAAGGGTATTTTAGTAATTT
1 AAATCAGGGGTATTTTGGTAATTT
55070817 GGTAAACTAA
Statistics
Matches: 110, Mismatches: 19, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
53 39 0.35
54 71 0.65
ACGTcount: A:0.31, C:0.08, G:0.19, T:0.41
Consensus pattern (54 bp):
AAATCAGGGGTATTTTGGTAATTTTACAAACTAGGAGTATTTTAATAATTTTAC
Found at i:55070726 original size:27 final size:27
Alignment explanation
Indices: 55070668--55070816 Score: 192
Period size: 27 Copynumber: 5.6 Consensus size: 27
55070658 CAAGTTGAGA
** *
55070668 GTATTTTAATAATTTTAC-AATCAGGG
1 GTATTTTGGTAATTTTACAAACCAGGG
* *
55070694 GTATTTTGGTAATTTTATAAACTAGGG
1 GTATTTTGGTAATTTTACAAACCAGGG
* *
55070721 GTATTTTTGTAATTTTACAAACCAGTG
1 GTATTTTGGTAATTTTACAAACCAGGG
55070748 GTATTTTGGTAATTTTACAAACCAGGG
1 GTATTTTGGTAATTTTACAAACCAGGG
* * *
55070775 GTATTTTGGTGATTTTATAAACCAAGG
1 GTATTTTGGTAATTTTACAAACCAGGG
*
55070802 GTATTTTAGTAATTT
1 GTATTTTGGTAATTT
55070817 GGTAAACTAA
Statistics
Matches: 106, Mismatches: 16, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
26 15 0.14
27 91 0.86
ACGTcount: A:0.30, C:0.07, G:0.19, T:0.44
Consensus pattern (27 bp):
GTATTTTGGTAATTTTACAAACCAGGG
Done.