Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100714657
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 3970000 characters in sequence are not A, C, G, or T
File 18 of 318
Found at i:6982008 original size:12 final size:12
Alignment explanation
Indices: 6981993--6982023 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
6981983 TTCTCTTTTA
6981993 TTTTTCTTTCCC
1 TTTTTCTTTCCC
*
6982005 TTTTTCTTTCTC
1 TTTTTCTTTCCC
6982017 TTTTTCT
1 TTTTTCT
6982024 CCCCTGCTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (12 bp):
TTTTTCTTTCCC
Found at i:6982124 original size:16 final size:16
Alignment explanation
Indices: 6982103--6982133 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
6982093 TTTATTATTT
6982103 TATTAACATAATATAA
1 TATTAACATAATATAA
*
6982119 TATTAATATAATATA
1 TATTAACATAATATA
6982134 TTAAAATATC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (16 bp):
TATTAACATAATATAA
Found at i:6983151 original size:22 final size:24
Alignment explanation
Indices: 6983113--6983162 Score: 61
Period size: 22 Copynumber: 2.2 Consensus size: 24
6983103 ACTAATGAAC
*
6983113 AGAGAGCACTGAAGTGCTA-T-AG
1 AGAGAGCACTAAAGTGCTAGTCAG
6983135 AGAGAGCAC-AAATGTGCTAGTCAG
1 AGAGAGCACTAAA-GTGCTAGTCAG
6983159 AGAG
1 AGAG
6983163 CATTGGCATG
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
21 2 0.08
22 15 0.62
23 1 0.04
24 6 0.25
ACGTcount: A:0.38, C:0.14, G:0.32, T:0.16
Consensus pattern (24 bp):
AGAGAGCACTAAAGTGCTAGTCAG
Found at i:6983186 original size:25 final size:25
Alignment explanation
Indices: 6983155--6983262 Score: 162
Period size: 25 Copynumber: 4.3 Consensus size: 25
6983145 AATGTGCTAG
*
6983155 TCAGAGAGCATTGGCATGCTAATAA
1 TCAGAGAGCATTGGCGTGCTAATAA
* *
6983180 TCAGAGAGCATTGGCTTGCTAATAT
1 TCAGAGAGCATTGGCGTGCTAATAA
* *
6983205 TCAGAGAGCACTGGCGTGCTAATAT
1 TCAGAGAGCATTGGCGTGCTAATAA
6983230 TCAGAGAGCATTGGCGTGCTAATAA
1 TCAGAGAGCATTGGCGTGCTAATAA
*
6983255 TTAGAGAG
1 TCAGAGAG
6983263 AACGCTGAGG
Statistics
Matches: 76, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 76 1.00
ACGTcount: A:0.31, C:0.16, G:0.27, T:0.26
Consensus pattern (25 bp):
TCAGAGAGCATTGGCGTGCTAATAA
Found at i:6986547 original size:25 final size:24
Alignment explanation
Indices: 6986509--6986566 Score: 91
Period size: 24 Copynumber: 2.4 Consensus size: 24
6986499 GGTTTCTTGA
6986509 TTTTTTT-GGAGGGTTAGGTTTTT
1 TTTTTTTGGGAGGGTTAGGTTTTT
*
6986532 CTTTTTTTGGGGGGGTTAGGTTTTT
1 -TTTTTTTGGGAGGGTTAGGTTTTT
6986557 TTTTTTTGGG
1 TTTTTTTGGG
6986567 TTAGGTTTTT
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
24 17 0.53
25 15 0.47
ACGTcount: A:0.05, C:0.02, G:0.33, T:0.60
Consensus pattern (24 bp):
TTTTTTTGGGAGGGTTAGGTTTTT
Found at i:6986556 original size:20 final size:20
Alignment explanation
Indices: 6986533--6986578 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 20
6986523 TAGGTTTTTC
6986533 TTTTTTTGGGGGGGTTAGGT
1 TTTTTTTGGGGGGGTTAGGT
****
6986553 TTTTTTTTTTTGGGTTAGGT
1 TTTTTTTGGGGGGGTTAGGT
6986573 TTTTTT
1 TTTTTT
6986579 CTTTTTTCTT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.04, C:0.00, G:0.30, T:0.65
Consensus pattern (20 bp):
TTTTTTTGGGGGGGTTAGGT
Found at i:6986573 original size:25 final size:25
Alignment explanation
Indices: 6986520--6986600 Score: 83
Period size: 25 Copynumber: 3.2 Consensus size: 25
6986510 TTTTTTGGAG
**
6986520 GGTTAGGTTTTTCTTTTTTTGGG-GG
1 GGTTAGGTTTTT-TTTTTTTGGGTTA
6986545 GGTTAGGTTTTTTTTTTTTGGGTTA
1 GGTTAGGTTTTTTTTTTTTGGGTTA
***
6986570 GGTTTTTTTCTTTTTTCTTTTGGGTTA
1 GGTTAGGTT-TTTTTT-TTTTGGGTTA
6986597 GGTT
1 GGTT
6986601 TTTTTTGGGA
Statistics
Matches: 48, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
24 10 0.21
25 18 0.38
26 6 0.12
27 14 0.29
ACGTcount: A:0.05, C:0.04, G:0.28, T:0.63
Consensus pattern (25 bp):
GGTTAGGTTTTTTTTTTTTGGGTTA
Found at i:6986590 original size:27 final size:27
Alignment explanation
Indices: 6986553--6986605 Score: 97
Period size: 27 Copynumber: 2.0 Consensus size: 27
6986543 GGGGTTAGGT
*
6986553 TTTTTTTTTTTGGGTTAGGTTTTTTTC
1 TTTTTTCTTTTGGGTTAGGTTTTTTTC
6986580 TTTTTTCTTTTGGGTTAGGTTTTTTT
1 TTTTTTCTTTTGGGTTAGGTTTTTTT
6986606 TGGGAGGGCT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.04, C:0.04, G:0.19, T:0.74
Consensus pattern (27 bp):
TTTTTTCTTTTGGGTTAGGTTTTTTTC
Found at i:6986605 original size:20 final size:20
Alignment explanation
Indices: 6986544--6986583 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
6986534 TTTTTTGGGG
*
6986544 GGGTTAGGTTTTTTTTTTTT
1 GGGTTAGGTTTTTTTCTTTT
6986564 GGGTTAGGTTTTTTTCTTTT
1 GGGTTAGGTTTTTTTCTTTT
6986584 TTCTTTTGGG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.05, C:0.03, G:0.25, T:0.68
Consensus pattern (20 bp):
GGGTTAGGTTTTTTTCTTTT
Found at i:6987032 original size:27 final size:27
Alignment explanation
Indices: 6986994--6987112 Score: 127
Period size: 27 Copynumber: 4.2 Consensus size: 27
6986984 AACTTGACAC
6986994 TTTTTCCTAATTTGGTACCTAAACTTT
1 TTTTTCCTAATTTGGTACCTAAACTTT
6987021 TTTTGTCC-AATTTGGTATCC-AAACTTGACACT
1 TTTT-TCCTAATTTGGTA-CCTAAACTT-----T
6987053 TTTTTCCTAATTTGGTACCTAAACTTTT
1 TTTTTCCTAATTTGGTACCTAAAC-TTT
*
6987081 TTTTGTCC-AATTTGGTACCTAATCTTT
1 TTTT-TCCTAATTTGGTACCTAAACTTT
6987108 TTTTT
1 TTTTT
6987113 GTTTGATTTG
Statistics
Matches: 80, Mismatches: 1, Indels: 23
0.77 0.01 0.22
Matches are distributed among these distances:
26 1 0.01
27 26 0.32
28 25 0.31
29 3 0.04
31 5 0.06
32 18 0.22
33 2 0.03
ACGTcount: A:0.21, C:0.18, G:0.09, T:0.51
Consensus pattern (27 bp):
TTTTTCCTAATTTGGTACCTAAACTTT
Found at i:6987065 original size:32 final size:32
Alignment explanation
Indices: 6986984--6987078 Score: 116
Period size: 32 Copynumber: 3.2 Consensus size: 32
6986974 TTGATACTTG
6986984 AACTTGACAC-TTTTTCCTAATTTGGTACCTA
1 AACTTGACACTTTTTTCCTAATTTGGTACCTA
6987015 AACTT-----TTTTTGTCC-AATTTGGTATCC-A
1 AACTTGACACTTTTT-TCCTAATTTGGTA-CCTA
6987042 AACTTGACACTTTTTTCCTAATTTGGTACCTA
1 AACTTGACACTTTTTTCCTAATTTGGTACCTA
6987074 AACTT
1 AACTT
6987079 TTTTTTGTCC
Statistics
Matches: 54, Mismatches: 0, Indels: 19
0.74 0.00 0.26
Matches are distributed among these distances:
27 19 0.35
28 5 0.09
31 10 0.19
32 20 0.37
ACGTcount: A:0.25, C:0.21, G:0.09, T:0.44
Consensus pattern (32 bp):
AACTTGACACTTTTTTCCTAATTTGGTACCTA
Found at i:6987072 original size:59 final size:59
Alignment explanation
Indices: 6986984--6987097 Score: 212
Period size: 59 Copynumber: 1.9 Consensus size: 59
6986974 TTGATACTTG
6986984 AACTTGACACTTTTTCCTAATTTGGTACCTAAAC-TTTTTTTGTCCAATTTGGTATCCA
1 AACTTGACACTTTTTCCTAATTTGGTACCTAAACTTTTTTTTGTCCAATTTGGTATCCA
6987042 AACTTGACACTTTTTTCCTAATTTGGTACCTAAACTTTTTTTTGTCCAATTTGGTA
1 AACTTGACAC-TTTTTCCTAATTTGGTACCTAAACTTTTTTTTGTCCAATTTGGTA
6987098 CCTAATCTTT
Statistics
Matches: 54, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
58 10 0.19
59 24 0.44
60 20 0.37
ACGTcount: A:0.24, C:0.19, G:0.11, T:0.46
Consensus pattern (59 bp):
AACTTGACACTTTTTCCTAATTTGGTACCTAAACTTTTTTTTGTCCAATTTGGTATCCA
Found at i:6987092 original size:28 final size:29
Alignment explanation
Indices: 6986994--6987114 Score: 137
Period size: 28 Copynumber: 4.2 Consensus size: 29
6986984 AACTTGACAC
6986994 TTTT-TCCTAATTTGGTACCTAAAC-TTT
1 TTTTGTCCTAATTTGGTACCTAAACTTTT
*
6987021 TTTTGTCC-AATTTGGTATCC-AAACTTGACACT
1 TTTTGTCCTAATTTGGTA-CCTAAACTT----TT
6987053 TTTT-TCCTAATTTGGTACCTAAACTTTT
1 TTTTGTCCTAATTTGGTACCTAAACTTTT
*
6987081 TTTTGTCC-AATTTGGTACCTAATCTTTT
1 TTTTGTCCTAATTTGGTACCTAAACTTTT
6987109 TTTTGT
1 TTTTGT
6987115 TTGATTTGGT
Statistics
Matches: 81, Mismatches: 3, Indels: 19
0.79 0.03 0.18
Matches are distributed among these distances:
27 17 0.21
28 36 0.44
29 3 0.04
31 5 0.06
32 20 0.25
ACGTcount: A:0.21, C:0.18, G:0.10, T:0.51
Consensus pattern (29 bp):
TTTTGTCCTAATTTGGTACCTAAACTTTT
Found at i:6987272 original size:4 final size:4
Alignment explanation
Indices: 6987256--6987291 Score: 63
Period size: 4 Copynumber: 9.0 Consensus size: 4
6987246 TATGTTCAAT
*
6987256 TTAA TTAA CTAA TTAA TTAA TTAA TTAA TTAA TTAA
1 TTAA TTAA TTAA TTAA TTAA TTAA TTAA TTAA TTAA
6987292 AAATAATGAA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
4 30 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (4 bp):
TTAA
Found at i:6989723 original size:14 final size:13
Alignment explanation
Indices: 6989692--6989725 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
6989682 AAAATTAATA
6989692 TTTTTAAAATATT
1 TTTTTAAAATATT
*
6989705 TTTTTATAATATT
1 TTTTTAAAATATT
6989718 TATTTTAA
1 T-TTTTAA
6989726 TTTATGCCAC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
13 13 0.72
14 5 0.28
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (13 bp):
TTTTTAAAATATT
Found at i:6997388 original size:21 final size:21
Alignment explanation
Indices: 6997364--6997404 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
6997354 TCCATTGTTC
*
6997364 AATAAGTCTTTAGTTATAGAT
1 AATAAGTCTTCAGTTATAGAT
*
6997385 AATAAGTCTTCAGTTTTAGA
1 AATAAGTCTTCAGTTATAGA
6997405 ATTTTTTTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.37, C:0.07, G:0.15, T:0.41
Consensus pattern (21 bp):
AATAAGTCTTCAGTTATAGAT
Found at i:6998339 original size:14 final size:14
Alignment explanation
Indices: 6998320--6998347 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
6998310 CATTATTTAT
6998320 TTAATAATTGTAGA
1 TTAATAATTGTAGA
6998334 TTAATAATTGTAGA
1 TTAATAATTGTAGA
6998348 ATATATAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.00, G:0.14, T:0.43
Consensus pattern (14 bp):
TTAATAATTGTAGA
Found at i:6998769 original size:6 final size:6
Alignment explanation
Indices: 6998758--6998789 Score: 55
Period size: 6 Copynumber: 5.3 Consensus size: 6
6998748 ATGACATGTT
*
6998758 GAGACA GAGACA GAGACA GAGACA GAAACA GA
1 GAGACA GAGACA GAGACA GAGACA GAGACA GA
6998790 AAAAGAAAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.53, C:0.16, G:0.31, T:0.00
Consensus pattern (6 bp):
GAGACA
Found at i:6999843 original size:6 final size:6
Alignment explanation
Indices: 6999832--6999861 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
6999822 TGATTAATGC
*
6999832 ATTCAT ATTCAT ATTCAT ATTCTT ATTCAT
1 ATTCAT ATTCAT ATTCAT ATTCAT ATTCAT
6999862 GTTATATTTG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.30, C:0.17, G:0.00, T:0.53
Consensus pattern (6 bp):
ATTCAT
Found at i:7000615 original size:21 final size:21
Alignment explanation
Indices: 7000590--7000641 Score: 77
Period size: 21 Copynumber: 2.5 Consensus size: 21
7000580 AATTAGTTAT
* *
7000590 TTTAGGGTTTACGGTTAGTGG
1 TTTAGGATTTACAGTTAGTGG
*
7000611 TTTAGGATTTATAGTTAGTGG
1 TTTAGGATTTACAGTTAGTGG
7000632 TTTAGGATTT
1 TTTAGGATTT
7000642 TAGGGTTAAT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.19, C:0.02, G:0.31, T:0.48
Consensus pattern (21 bp):
TTTAGGATTTACAGTTAGTGG
Found at i:7000741 original size:19 final size:18
Alignment explanation
Indices: 7000719--7000777 Score: 55
Period size: 19 Copynumber: 3.1 Consensus size: 18
7000709 TGGTTAGTTA
7000719 ATTAAATTAGGGTTATTCG
1 ATTAAATTAGGGTTATT-G
* * *
7000738 ATTAAATGAGCGTCAATTG
1 ATTAAATTAGGGT-TATTG
*
7000757 ATTAATTTAGGGTTAATTG
1 ATTAAATTAGGGTT-ATTG
7000776 AT
1 AT
7000778 ACATAATGGT
Statistics
Matches: 31, Mismatches: 7, Indels: 4
0.74 0.17 0.10
Matches are distributed among these distances:
19 28 0.90
20 3 0.10
ACGTcount: A:0.34, C:0.05, G:0.20, T:0.41
Consensus pattern (18 bp):
ATTAAATTAGGGTTATTG
Found at i:7001124 original size:126 final size:126
Alignment explanation
Indices: 7000899--7001270 Score: 681
Period size: 126 Copynumber: 3.0 Consensus size: 126
7000889 TTAGGTTAAT
7000899 TGAGTAGACGTTTCTGAACAAATAGTGTCAAAAACGCTTCAAGCAGGATGCACTGTCAGCAAAAT
1 TGAGTAGACGTTTCTGAACAAATAGTGTCAAAAACGCTTCAAGCAGGATGCACTGTCAGCAAAAT
* *
7000964 TTTGGAAAAAAGCTCCCACGTGGACGCGCTTTTGCTACAATAGTTCGTAGAAAAATAATTC
66 TTCGGAAAAAAGCTCCCACGTGGACGCGCTTTTGCTACAGTAGTTCGTAGAAAAATAATTC
*
7001025 TGAGTAGACGTTTCTGAACAAATAGTGTCAAAAACGCTTCAAGCAGGATGCACTATCAGCAAAAT
1 TGAGTAGACGTTTCTGAACAAATAGTGTCAAAAACGCTTCAAGCAGGATGCACTGTCAGCAAAAT
*
7001090 TTCGGAAAAAAGCTCCCACGTGAACGCGCTTTTGCTACAGTAGTTCGTAGAAAAATAATTC
66 TTCGGAAAAAAGCTCCCACGTGGACGCGCTTTTGCTACAGTAGTTCGTAGAAAAATAATTC
*
7001151 TGAGTAGACGTTTCTGAACAAATAGTGTCAAAAACGCTTTAAGCAGGATGCACTGTCAGCAAAAT
1 TGAGTAGACGTTTCTGAACAAATAGTGTCAAAAACGCTTCAAGCAGGATGCACTGTCAGCAAAAT
* *
7001216 TTCAGAAAAAAGCTCCCACATGGACGCGCTTTTGCTACAGTAGTTCGTAGAAAAA
66 TTCGGAAAAAAGCTCCCACGTGGACGCGCTTTTGCTACAGTAGTTCGTAGAAAAA
7001271 CTGAGGCTAT
Statistics
Matches: 237, Mismatches: 9, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
126 237 1.00
ACGTcount: A:0.35, C:0.19, G:0.20, T:0.25
Consensus pattern (126 bp):
TGAGTAGACGTTTCTGAACAAATAGTGTCAAAAACGCTTCAAGCAGGATGCACTGTCAGCAAAAT
TTCGGAAAAAAGCTCCCACGTGGACGCGCTTTTGCTACAGTAGTTCGTAGAAAAATAATTC
Found at i:7003669 original size:13 final size:14
Alignment explanation
Indices: 7003653--7003688 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 14
7003643 CAATCTCATA
7003653 TCTCAATTTCAA-T
1 TCTCAATTTCAATT
7003666 TCTCAA-TTCAATT
1 TCTCAATTTCAATT
7003679 TCTC-ATTTCA
1 TCTCAATTTCA
7003689 TTCCAATAGC
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
12 6 0.29
13 15 0.71
ACGTcount: A:0.28, C:0.25, G:0.00, T:0.47
Consensus pattern (14 bp):
TCTCAATTTCAATT
Found at i:7003678 original size:18 final size:19
Alignment explanation
Indices: 7003640--7003680 Score: 59
Period size: 18 Copynumber: 2.2 Consensus size: 19
7003630 TGGTTCATGT
7003640 TTTCAATCTCATATCTCAA
1 TTTCAATCTCATATCTCAA
7003659 TTTCAATTCTCA-AT-TCAA
1 TTTCAA-TCTCATATCTCAA
7003677 TTTC
1 TTTC
7003681 TCATTTCATT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 8 0.38
19 8 0.38
20 5 0.24
ACGTcount: A:0.29, C:0.24, G:0.00, T:0.46
Consensus pattern (19 bp):
TTTCAATCTCATATCTCAA
Found at i:7004341 original size:15 final size:15
Alignment explanation
Indices: 7004317--7004369 Score: 70
Period size: 15 Copynumber: 3.5 Consensus size: 15
7004307 ATATATATAT
*
7004317 TATAATTTCAATCAA
1 TATAAATTCAATCAA
7004332 TATAAATTCAATCAA
1 TATAAATTCAATCAA
* * *
7004347 AATGATTTCAATCAA
1 TATAAATTCAATCAA
7004362 TATAAATT
1 TATAAATT
7004370 TGATAAATTC
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
15 31 1.00
ACGTcount: A:0.49, C:0.11, G:0.02, T:0.38
Consensus pattern (15 bp):
TATAAATTCAATCAA
Found at i:7005236 original size:19 final size:19
Alignment explanation
Indices: 7005212--7005250 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
7005202 AATACTTATT
*
7005212 TATTATTTATACATGTGTA
1 TATTATTAATACATGTGTA
7005231 TATTATTAATACATGTGTA
1 TATTATTAATACATGTGTA
7005250 T
1 T
7005251 CTATTTAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.33, C:0.05, G:0.10, T:0.51
Consensus pattern (19 bp):
TATTATTAATACATGTGTA
Found at i:7005258 original size:19 final size:19
Alignment explanation
Indices: 7005215--7005258 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
7005205 ACTTATTTAT
7005215 TATTT-ATACATGTGTATA
1 TATTTAATACATGTGTATA
*
7005233 T-TATTAATACATGTGTATC
1 TAT-TTAATACATGTGTATA
7005252 TATTTAA
1 TATTTAA
7005259 AATCATACAT
Statistics
Matches: 22, Mismatches: 1, Indels: 5
0.79 0.04 0.18
Matches are distributed among these distances:
17 1 0.05
18 3 0.14
19 17 0.77
20 1 0.05
ACGTcount: A:0.34, C:0.07, G:0.09, T:0.50
Consensus pattern (19 bp):
TATTTAATACATGTGTATA
Found at i:7006345 original size:127 final size:127
Alignment explanation
Indices: 7006119--7006372 Score: 508
Period size: 127 Copynumber: 2.0 Consensus size: 127
7006109 GCTATTGCTA
7006119 GCACAGGATGGCAGTGGAAGAATCCTTCCAATTGCGTTTGTAATAACACCAGGGGAGTCAGCTGA
1 GCACAGGATGGCAGTGGAAGAATCCTTCCAATTGCGTTTGTAATAACACCAGGGGAGTCAGCTGA
7006184 TGACTGAGATTTCTTTCTTTCTAGGCTAAGGAGGCATGTTTGCCCCCAACCTAATATCTGTG
66 TGACTGAGATTTCTTTCTTTCTAGGCTAAGGAGGCATGTTTGCCCCCAACCTAATATCTGTG
7006246 GCACAGGATGGCAGTGGAAGAATCCTTCCAATTGCGTTTGTAATAACACCAGGGGAGTCAGCTGA
1 GCACAGGATGGCAGTGGAAGAATCCTTCCAATTGCGTTTGTAATAACACCAGGGGAGTCAGCTGA
7006311 TGACTGAGATTTCTTTCTTTCTAGGCTAAGGAGGCATGTTTGCCCCCAACCTAATATCTGTG
66 TGACTGAGATTTCTTTCTTTCTAGGCTAAGGAGGCATGTTTGCCCCCAACCTAATATCTGTG
7006373 TCATATCAGA
Statistics
Matches: 127, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
127 127 1.00
ACGTcount: A:0.25, C:0.21, G:0.25, T:0.28
Consensus pattern (127 bp):
GCACAGGATGGCAGTGGAAGAATCCTTCCAATTGCGTTTGTAATAACACCAGGGGAGTCAGCTGA
TGACTGAGATTTCTTTCTTTCTAGGCTAAGGAGGCATGTTTGCCCCCAACCTAATATCTGTG
Found at i:7008678 original size:18 final size:18
Alignment explanation
Indices: 7008652--7008694 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
7008642 GATTAAGAAA
* *
7008652 AGGAAACATAAAAGGGTT
1 AGGATACATAAAAGGGAT
*
7008670 AGGATACATATAAGGGAT
1 AGGATACATAAAAGGGAT
7008688 AGGATAC
1 AGGATAC
7008695 GTACCTGGCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.47, C:0.07, G:0.28, T:0.19
Consensus pattern (18 bp):
AGGATACATAAAAGGGAT
Found at i:7008847 original size:30 final size:30
Alignment explanation
Indices: 7008760--7008847 Score: 110
Period size: 30 Copynumber: 2.9 Consensus size: 30
7008750 TTGGGCCCGG
7008760 TGATTGTA-GCGGCGCTGTTGATGAG-CTTGC
1 TGATTGTATG-GGCGCTGTTGATG-GCCTTGC
7008790 TGATTGTATGGGCGCTGTTGATGGGCCTT-C
1 TGATTGTATGGGCGCTGTTGAT-GGCCTTGC
*
7008820 TGATTGTGTGGGCGCTGTTGATAGGCCT
1 TGATTGTATGGGCGCTGTTGAT-GGCCT
7008848 GCGTCGTCGT
Statistics
Matches: 53, Mismatches: 2, Indels: 6
0.87 0.03 0.10
Matches are distributed among these distances:
30 48 0.91
31 5 0.09
ACGTcount: A:0.11, C:0.16, G:0.38, T:0.35
Consensus pattern (30 bp):
TGATTGTATGGGCGCTGTTGATGGCCTTGC
Found at i:7010576 original size:13 final size:13
Alignment explanation
Indices: 7010558--7010583 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
7010548 GCAGGGGAGA
7010558 AAAAGAAAGAAAG
1 AAAAGAAAGAAAG
7010571 AAAAGAAAGAAAG
1 AAAAGAAAGAAAG
7010584 GGAGAAAAGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (13 bp):
AAAAGAAAGAAAG
Found at i:7012661 original size:21 final size:21
Alignment explanation
Indices: 7012636--7012692 Score: 82
Period size: 21 Copynumber: 2.8 Consensus size: 21
7012626 ATGCAAACAT
*
7012636 CATAACTGAAAATTAAATTTG
1 CATAAATGAAAATTAAATTTG
7012657 CATAAATGAAAATTAAATTTG
1 CATAAATGAAAATTAAATTTG
*
7012678 AATAAAT--AAATTAAA
1 CATAAATGAAAATTAAA
7012693 GTATCACTCA
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
19 8 0.24
21 26 0.76
ACGTcount: A:0.56, C:0.05, G:0.07, T:0.32
Consensus pattern (21 bp):
CATAAATGAAAATTAAATTTG
Found at i:7015166 original size:15 final size:16
Alignment explanation
Indices: 7015148--7015180 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
7015138 TATTATTTTA
7015148 AAAAATATT-TTAAAT
1 AAAAATATTATTAAAT
*
7015163 AAAAGTATTATTAAAT
1 AAAAATATTATTAAAT
7015179 AA
1 AA
7015181 TATGTTTTTG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 8 0.50
16 8 0.50
ACGTcount: A:0.61, C:0.00, G:0.03, T:0.36
Consensus pattern (16 bp):
AAAAATATTATTAAAT
Found at i:7015176 original size:16 final size:16
Alignment explanation
Indices: 7015136--7015180 Score: 51
Period size: 16 Copynumber: 2.9 Consensus size: 16
7015126 TAGTCAATTT
*
7015136 AGTATTATTTTAA-AAA
1 AGTATTA-TTAAATAAA
7015152 A-TATT-TTAAATAAA
1 AGTATTATTAAATAAA
7015166 AGTATTATTAAATAA
1 AGTATTATTAAATAA
7015181 TATGTTTTTG
Statistics
Matches: 25, Mismatches: 1, Indels: 6
0.78 0.03 0.19
Matches are distributed among these distances:
13 4 0.16
14 4 0.16
15 8 0.32
16 9 0.36
ACGTcount: A:0.53, C:0.00, G:0.04, T:0.42
Consensus pattern (16 bp):
AGTATTATTAAATAAA
Found at i:7016568 original size:12 final size:12
Alignment explanation
Indices: 7016551--7016576 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
7016541 GTCGTCGTCG
7016551 TCGTCATCATCA
1 TCGTCATCATCA
7016563 TCGTCATCATCA
1 TCGTCATCATCA
7016575 TC
1 TC
7016577 TTCTTCTTCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.23, C:0.35, G:0.08, T:0.35
Consensus pattern (12 bp):
TCGTCATCATCA
Found at i:7024634 original size:23 final size:23
Alignment explanation
Indices: 7024608--7024666 Score: 118
Period size: 23 Copynumber: 2.6 Consensus size: 23
7024598 TGAATTTACT
7024608 TGTTATGAACATAAACACTCTCG
1 TGTTATGAACATAAACACTCTCG
7024631 TGTTATGAACATAAACACTCTCG
1 TGTTATGAACATAAACACTCTCG
7024654 TGTTATGAACATA
1 TGTTATGAACATA
7024667 TGTTTATTAG
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 36 1.00
ACGTcount: A:0.36, C:0.19, G:0.14, T:0.32
Consensus pattern (23 bp):
TGTTATGAACATAAACACTCTCG
Found at i:7035919 original size:2 final size:2
Alignment explanation
Indices: 7035912--7035955 Score: 88
Period size: 2 Copynumber: 22.0 Consensus size: 2
7035902 TTTGATAGTA
7035912 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
7035954 AG
1 AG
7035956 GAGCCTGTTG
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:7046422 original size:12 final size:11
Alignment explanation
Indices: 7046407--7046432 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
7046397 TCTTTTACAG
7046407 TTTTTTTTTTA
1 TTTTTTTTTTA
7046418 TTTTTTTTTTA
1 TTTTTTTTTTA
7046429 TTTT
1 TTTT
7046433 GAGTAGTATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.08, C:0.00, G:0.00, T:0.92
Consensus pattern (11 bp):
TTTTTTTTTTA
Found at i:7046800 original size:15 final size:15
Alignment explanation
Indices: 7046780--7046819 Score: 53
Period size: 16 Copynumber: 2.6 Consensus size: 15
7046770 TTTTATAAAT
*
7046780 TTAAAAATAATTATA
1 TTAAAAATAATAATA
7046795 TTAAAAATAAATAATA
1 TTAAAAAT-AATAATA
*
7046811 TAAAAAATA
1 TTAAAAATA
7046820 TTCAATTTGA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
15 9 0.41
16 13 0.59
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.33
Consensus pattern (15 bp):
TTAAAAATAATAATA
Found at i:7058944 original size:3 final size:3
Alignment explanation
Indices: 7058936--7058963 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
7058926 GGCTTCTCTT
7058936 TGA TGA TGA TGA TGA TGA TGA TGA TGA T
1 TGA TGA TGA TGA TGA TGA TGA TGA TGA T
7058964 CTTTTGTTCT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.32, C:0.00, G:0.32, T:0.36
Consensus pattern (3 bp):
TGA
Found at i:7066589 original size:46 final size:46
Alignment explanation
Indices: 7066516--7066666 Score: 185
Period size: 47 Copynumber: 3.2 Consensus size: 46
7066506 CACATAGTCC
* * ** *
7066516 CATATCACATACCGAGGCCATAGCCCAGCCATGGTCTTATACGGATCA
1 CATATCAC--ACCGATGCCATATCCCAGATATGGTCTTATACGGAGCA
* *
7066564 CATATCACACTGATGCCATATCCCAGATATGGTCTTATACAGTAGCA
1 CATATCACACCGATGCCATATCCCAGATATGGTCTTATAC-GGAGCA
*
7066611 CATATCACACCGATGCCATATCCCGGATATGGTCTTATACGGAAGCA
1 CATATCACACCGATGCCATATCCCAGATATGGTCTTATACGG-AGCA
*
7066658 CAAATCACA
1 CATATCACA
7066667 TTTCTCCGAA
Statistics
Matches: 90, Mismatches: 11, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
46 28 0.31
47 54 0.60
48 8 0.09
ACGTcount: A:0.32, C:0.28, G:0.17, T:0.23
Consensus pattern (46 bp):
CATATCACACCGATGCCATATCCCAGATATGGTCTTATACGGAGCA
Found at i:7071912 original size:18 final size:18
Alignment explanation
Indices: 7071878--7071911 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
7071868 AGGTTTCCAC
*
7071878 AACATATTGTTATTTTTA
1 AACATAATGTTATTTTTA
7071896 AACATAATGTT-TTTTT
1 AACATAATGTTATTTTT
7071912 TCCTATCAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.32, C:0.06, G:0.06, T:0.56
Consensus pattern (18 bp):
AACATAATGTTATTTTTA
Found at i:7072106 original size:11 final size:11
Alignment explanation
Indices: 7072076--7072105 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
7072066 CAAATTTGAT
7072076 TTTTTAAAATA
1 TTTTTAAAATA
7072087 TTTTTAAAATA
1 TTTTTAAAATA
7072098 -TTTTAAAA
1 TTTTTAAAA
7072106 AATTAATTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 8 0.42
11 11 0.58
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (11 bp):
TTTTTAAAATA
Found at i:7072648 original size:25 final size:25
Alignment explanation
Indices: 7072619--7072669 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
7072609 AGTTTATAGG
*
7072619 TACGATACTCTTGGATTATAAAAAA
1 TACGATACTCTAGGATTATAAAAAA
7072644 TACGATACTCTAGGATTATAAAAAA
1 TACGATACTCTAGGATTATAAAAAA
7072669 T
1 T
7072670 GGAAAATATG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.45, C:0.12, G:0.12, T:0.31
Consensus pattern (25 bp):
TACGATACTCTAGGATTATAAAAAA
Found at i:7083403 original size:21 final size:21
Alignment explanation
Indices: 7083379--7083470 Score: 66
Period size: 21 Copynumber: 4.4 Consensus size: 21
7083369 AATTCATTCT
7083379 ATTATTTTAATCGATTTGACA
1 ATTATTTTAATCGATTTGACA
** * *
7083400 ATTATTTTTAAATTTAATTGATTA
1 ATTA-TTTT-AATCGATTTGA-CA
* *
7083424 ATTTTTTTAATTC-A-TT--CT
1 ATTATTTTAA-TCGATTTGACA
7083442 ATTATTTTAATCGATTTGACA
1 ATTATTTTAATCGATTTGACA
7083463 ATTATTTT
1 ATTATTTT
7083471 TAAATTTAAC
Statistics
Matches: 53, Mismatches: 10, Indels: 16
0.67 0.13 0.20
Matches are distributed among these distances:
17 2 0.04
18 10 0.19
19 2 0.04
21 15 0.28
22 7 0.13
23 13 0.25
24 4 0.08
ACGTcount: A:0.32, C:0.07, G:0.05, T:0.57
Consensus pattern (21 bp):
ATTATTTTAATCGATTTGACA
Found at i:7083436 original size:63 final size:64
Alignment explanation
Indices: 7083360--7083488 Score: 233
Period size: 63 Copynumber: 2.0 Consensus size: 64
7083350 AAAATCAGAG
*
7083360 TTTTTTTAAAATTCATTCTATTATTTTAATCGATTTGACAATTATTTTTAAATTTAATTGATTAA
1 TTTTTTT-AAATTCATTCTATTATTTTAATCGATTTGACAATTATTTTTAAATTTAACTGATTAA
7083425 TTTTTTT-AATTCATTCTATTATTTTAATCGATTTGACAATTATTTTTAAATTTAACTGATTAA
1 TTTTTTTAAATTCATTCTATTATTTTAATCGATTTGACAATTATTTTTAAATTTAACTGATTAA
7083488 T
1 T
7083489 CAATTAACAT
Statistics
Matches: 63, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
63 56 0.89
65 7 0.11
ACGTcount: A:0.33, C:0.07, G:0.05, T:0.56
Consensus pattern (64 bp):
TTTTTTTAAATTCATTCTATTATTTTAATCGATTTGACAATTATTTTTAAATTTAACTGATTAA
Found at i:7084382 original size:20 final size:22
Alignment explanation
Indices: 7084325--7084383 Score: 61
Period size: 20 Copynumber: 2.7 Consensus size: 22
7084315 GATTTGTATT
7084325 ATGTCTATATTATTTTTCTTATC
1 ATGT-TATATTATTTTTCTTATC
7084348 ATGTTATAATT-TTTTT-TTAT-
1 ATGTTAT-ATTATTTTTCTTATC
* *
7084368 TTTTTATATTATTTTT
1 ATGTTATATTATTTTT
7084384 ATGTCGTGTA
Statistics
Matches: 32, Mismatches: 2, Indels: 7
0.78 0.05 0.17
Matches are distributed among these distances:
19 3 0.09
20 10 0.31
21 4 0.12
22 8 0.25
23 7 0.22
ACGTcount: A:0.22, C:0.05, G:0.03, T:0.69
Consensus pattern (22 bp):
ATGTTATATTATTTTTCTTATC
Found at i:7087641 original size:37 final size:38
Alignment explanation
Indices: 7087600--7087689 Score: 93
Period size: 33 Copynumber: 2.5 Consensus size: 38
7087590 TATTACAAAT
* *
7087600 TAAAATACATAATTTATATATTTGAA-ATAAATTTTA-A
1 TAAAATACATAATTTATATA-TTCAATATAAATATTATA
7087637 T-AAA-A-ATAATTT-TATATTCAATATAAATATTATA
1 TAAAATACATAATTTATATATTCAATATAAATATTATA
*
7087671 TAAAATACATTAAATTATA
1 TAAAATACA-TAATTTATA
7087690 AATAAAGGTT
Statistics
Matches: 43, Mismatches: 3, Indels: 12
0.74 0.05 0.21
Matches are distributed among these distances:
32 4 0.09
33 13 0.30
34 9 0.21
35 4 0.09
36 4 0.09
37 2 0.05
38 5 0.12
39 2 0.05
ACGTcount: A:0.53, C:0.03, G:0.01, T:0.42
Consensus pattern (38 bp):
TAAAATACATAATTTATATATTCAATATAAATATTATA
Found at i:7087677 original size:18 final size:18
Alignment explanation
Indices: 7087626--7087677 Score: 56
Period size: 18 Copynumber: 3.1 Consensus size: 18
7087616 TATATTTGAA
7087626 ATAAATTTTA-ATAAAA-
1 ATAAATTTTATATAAAAT
**
7087642 AT-AATTTTATATTCAAT
1 ATAAATTTTATATAAAAT
*
7087659 ATAAATATTATATAAAAT
1 ATAAATTTTATATAAAAT
7087677 A
1 A
7087678 CATTAAATTA
Statistics
Matches: 28, Mismatches: 5, Indels: 4
0.76 0.14 0.11
Matches are distributed among these distances:
15 7 0.25
16 6 0.21
17 2 0.07
18 13 0.46
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (18 bp):
ATAAATTTTATATAAAAT
Found at i:7103178 original size:33 final size:33
Alignment explanation
Indices: 7103136--7103201 Score: 132
Period size: 33 Copynumber: 2.0 Consensus size: 33
7103126 CTCCTTGGAC
7103136 CTTTAATAGTCATCTCTTGATTTTACATAGGAT
1 CTTTAATAGTCATCTCTTGATTTTACATAGGAT
7103169 CTTTAATAGTCATCTCTTGATTTTACATAGGAT
1 CTTTAATAGTCATCTCTTGATTTTACATAGGAT
7103202 TGGGGAAAAT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.27, C:0.15, G:0.12, T:0.45
Consensus pattern (33 bp):
CTTTAATAGTCATCTCTTGATTTTACATAGGAT
Found at i:7106518 original size:46 final size:45
Alignment explanation
Indices: 7106448--7106620 Score: 154
Period size: 46 Copynumber: 3.8 Consensus size: 45
7106438 GTTGAGCATC
*
7106448 CGAACTCGTTGAGTTGAGTTCGAGTTCACTTATGAATGCGAATGTT
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGAATGCGAATG-T
** * * *
7106494 CGAACTCGTTGAGTTGAGTCCGAGTT-TGTGAGATGTAACTAG-GCATCT
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACT--TATG-AA-T-GCGAATGT
* * * * *
7106542 -GAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGAATGCGAATGT
*
7106586 CCAAGCTCGTTGAGTTGAGTCCGAGTTCACTTATG
1 CGAA-CTCGTTGAGTTGAGTCCGAGTTCACTTATG
7106621 GGCGGGTTGC
Statistics
Matches: 99, Mismatches: 19, Indels: 18
0.73 0.14 0.13
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 3 0.03
46 57 0.58
47 26 0.26
48 4 0.04
49 4 0.04
50 1 0.01
ACGTcount: A:0.22, C:0.18, G:0.28, T:0.32
Consensus pattern (45 bp):
CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGAATGCGAATGT
Found at i:7106566 original size:93 final size:93
Alignment explanation
Indices: 7106443--7106612 Score: 254
Period size: 93 Copynumber: 1.8 Consensus size: 93
7106433 GCATGGTTGA
* * *
7106443 GCATCCGAACTCGTTGAGTTGAGTTCGAGTTCACTTATGAATGCGAATGTTCGAA-CTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTTCGAGTTCACTTATGAATGCGAACG-CCCAAGCTCGTTGAG
7106507 TTGAGTCCGAGTTTGTGAGATGTAACTAG
65 TTGAGTCCGAGTTTGTGAGATGTAACTAG
* * *
7106536 GCATCTGAGCTCGTTGAGTTGAG-TCTGAGTTCACTTATGGATGCGAACGCCCAAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTTC-GAGTTCACTTATGAATGCGAACGCCCAAGCTCGTTGAG
7106600 TTGAGTCCGAGTT
65 TTGAGTCCGAGTT
7106613 CACTTATGGG
Statistics
Matches: 69, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
92 5 0.07
93 64 0.93
ACGTcount: A:0.22, C:0.18, G:0.29, T:0.31
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTTCGAGTTCACTTATGAATGCGAACGCCCAAGCTCGTTGAGT
TGAGTCCGAGTTTGTGAGATGTAACTAG
Found at i:7117166 original size:25 final size:25
Alignment explanation
Indices: 7117138--7117185 Score: 71
Period size: 25 Copynumber: 1.9 Consensus size: 25
7117128 TTGCATAATT
*
7117138 ATGTCATGATT-CTATCACTACAATC
1 ATGTCA-GATTACTATCACAACAATC
7117163 ATGTCAGATTACTATCACAACAA
1 ATGTCAGATTACTATCACAACAA
7117186 CCTTCATATT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 4 0.19
25 17 0.81
ACGTcount: A:0.38, C:0.23, G:0.08, T:0.31
Consensus pattern (25 bp):
ATGTCAGATTACTATCACAACAATC
Found at i:7117468 original size:24 final size:24
Alignment explanation
Indices: 7117441--7117488 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
7117431 TGGATATAGA
7117441 GATTTCCCTTTTGGTTCTATTTAT
1 GATTTCCCTTTTGGTTCTATTTAT
7117465 GATTTCCCTTTTGGTTCTATTTAT
1 GATTTCCCTTTTGGTTCTATTTAT
7117489 TCTCACTCCT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.12, C:0.17, G:0.12, T:0.58
Consensus pattern (24 bp):
GATTTCCCTTTTGGTTCTATTTAT
Found at i:7126125 original size:20 final size:20
Alignment explanation
Indices: 7126097--7126134 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
7126087 TCAATCATTA
*
7126097 AATATATATAAAAAAAATTC
1 AATAAATATAAAAAAAATTC
*
7126117 AATAAATATAACAAAAAT
1 AATAAATATAAAAAAAAT
7126135 ATTGATTCCA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.68, C:0.05, G:0.00, T:0.26
Consensus pattern (20 bp):
AATAAATATAAAAAAAATTC
Found at i:7133092 original size:13 final size:11
Alignment explanation
Indices: 7133060--7133102 Score: 52
Period size: 11 Copynumber: 3.8 Consensus size: 11
7133050 ACCATCTTTA
*
7133060 AATAAAATAAT
1 AATAAAATATT
7133071 AAT-AAATATCT
1 AATAAAATAT-T
7133082 AAGTAAAATATT
1 AA-TAAAATATT
7133094 AATAAAATA
1 AATAAAATA
7133103 ATATTTAACT
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
10 5 0.18
11 13 0.46
12 4 0.14
13 6 0.21
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.30
Consensus pattern (11 bp):
AATAAAATATT
Found at i:7134120 original size:8 final size:7
Alignment explanation
Indices: 7134102--7134142 Score: 50
Period size: 7 Copynumber: 6.1 Consensus size: 7
7134092 CGGTAATTTT
7134102 ATTTTAA
1 ATTTTAA
7134109 ATTTTAA
1 ATTTTAA
* *
7134116 AATTTGA
1 ATTTTAA
7134123 A-TTTAA
1 ATTTTAA
7134129 A-TTTAA
1 ATTTTAA
7134135 ATTTTAA
1 ATTTTAA
7134142 A
1 A
7134143 AGATAAAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
6 11 0.37
7 19 0.63
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.51
Consensus pattern (7 bp):
ATTTTAA
Found at i:7134129 original size:13 final size:14
Alignment explanation
Indices: 7134104--7134143 Score: 57
Period size: 12 Copynumber: 3.0 Consensus size: 14
7134094 GTAATTTTAT
7134104 TTTAAATTTTAAAA
1 TTTAAATTTTAAAA
*
7134118 TTTGAA-TTT-AAA
1 TTTAAATTTTAAAA
7134130 TTTAAATTTTAAAA
1 TTTAAATTTTAAAA
7134144 GATAAAAATA
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
12 8 0.36
13 6 0.27
14 8 0.36
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (14 bp):
TTTAAATTTTAAAA
Found at i:7152121 original size:15 final size:16
Alignment explanation
Indices: 7152089--7152129 Score: 57
Period size: 15 Copynumber: 2.6 Consensus size: 16
7152079 AAATACCTAA
7152089 ATTATAAATTCATAATT
1 ATTATAAATT-ATAATT
7152106 ATTATAAATT-TAATT
1 ATTATAAATTATAATT
*
7152121 ATTAAAAAT
1 ATTATAAAT
7152130 ATATGTAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 13 0.57
17 10 0.43
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.46
Consensus pattern (16 bp):
ATTATAAATTATAATT
Found at i:7166357 original size:20 final size:22
Alignment explanation
Indices: 7166334--7166373 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
7166324 TTCAATGGTT
7166334 TTCT-TTTC-ATTTTTTTTTTC
1 TTCTATTTCGATTTTTTTTTTC
*
7166354 TTCTATTTCGCTTTTTTTTT
1 TTCTATTTCGATTTTTTTTT
7166374 GAAAATTCTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 4 0.24
21 4 0.24
22 9 0.53
ACGTcount: A:0.05, C:0.15, G:0.03, T:0.78
Consensus pattern (22 bp):
TTCTATTTCGATTTTTTTTTTC
Found at i:7167535 original size:27 final size:28
Alignment explanation
Indices: 7167505--7167571 Score: 109
Period size: 27 Copynumber: 2.4 Consensus size: 28
7167495 TAATATATCG
7167505 AATTTTAAAAAAATATAAAATA-TTTAA
1 AATTTTAAAAAAATATAAAATATTTTAA
7167532 AATTTTAAAAAAATATAAAATATTTTAA
1 AATTTTAAAAAAATATAAAATATTTTAA
*
7167560 ACATTATAAAAA
1 A-ATTTTAAAAA
7167572 TTAAAAATAG
Statistics
Matches: 37, Mismatches: 1, Indels: 2
0.93 0.03 0.05
Matches are distributed among these distances:
27 22 0.59
28 6 0.16
29 9 0.24
ACGTcount: A:0.63, C:0.01, G:0.00, T:0.36
Consensus pattern (28 bp):
AATTTTAAAAAAATATAAAATATTTTAA
Found at i:7168219 original size:12 final size:12
Alignment explanation
Indices: 7168182--7168220 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
7168172 AAAGTGATAA
*
7168182 TGATGATGACGA
1 TGATGATGACGG
* *
7168194 CGATGATGATGG
1 TGATGATGACGG
7168206 TGATGATGACGG
1 TGATGATGACGG
7168218 TGA
1 TGA
7168221 ATTAAACAAT
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.28, C:0.08, G:0.38, T:0.26
Consensus pattern (12 bp):
TGATGATGACGG
Found at i:7169946 original size:45 final size:46
Alignment explanation
Indices: 7169879--7169995 Score: 121
Period size: 46 Copynumber: 2.6 Consensus size: 46
7169869 AACAGATGTT
* * *
7169879 ATAGTGTC-TTCAATCCACGGTCTTATTTATCTT-TGACGTGATGCC
1 ATAGTGTCTTTCAA-CCATGGTCTTATTCATCTTCTGACATGATGCC
* * * * *
7169924 ATAGTGTCTTTCAACTATGGTCTTACTCATTTTCTGTCATGTTGCC
1 ATAGTGTCTTTCAACCATGGTCTTATTCATCTTCTGACATGATGCC
* *
7169970 ATGGTATCTTTCAACCATGGTCTTAT
1 ATAGTGTCTTTCAACCATGGTCTTAT
7169996 GTAACACCTC
Statistics
Matches: 58, Mismatches: 12, Indels: 3
0.79 0.16 0.04
Matches are distributed among these distances:
45 22 0.38
46 36 0.62
ACGTcount: A:0.20, C:0.21, G:0.16, T:0.43
Consensus pattern (46 bp):
ATAGTGTCTTTCAACCATGGTCTTATTCATCTTCTGACATGATGCC
Found at i:7171023 original size:38 final size:39
Alignment explanation
Indices: 7170939--7171032 Score: 102
Period size: 39 Copynumber: 2.4 Consensus size: 39
7170929 ACCAATATGG
*
7170939 CACCCAGTGCCTCATCGGATAGTTCGAAGTAATAGTTGA
1 CACCCAGTGCCTCATCGGATAGTCCGAAGTAATAGTTGA
* * * *
7170978 CAACCAGTGTCTCATCGGCCTAG-CCGAAGTAA-AGTTGG
1 CACCCAGTGCCTCATCGG-ATAGTCCGAAGTAATAGTTGA
* *
7171016 TACCCAGTACCTCATCG
1 CACCCAGTGCCTCATCG
7171033 AATCTATCCG
Statistics
Matches: 45, Mismatches: 9, Indels: 3
0.79 0.16 0.05
Matches are distributed among these distances:
38 18 0.40
39 24 0.53
40 3 0.07
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (39 bp):
CACCCAGTGCCTCATCGGATAGTCCGAAGTAATAGTTGA
Found at i:7172653 original size:5 final size:5
Alignment explanation
Indices: 7172635--7172670 Score: 63
Period size: 5 Copynumber: 7.0 Consensus size: 5
7172625 TTTCTTTTAT
7172635 ATATA ATAATA ATATA ATATA ATATA ATATA ATATA
1 ATATA AT-ATA ATATA ATATA ATATA ATATA ATATA
7172671 CTTAATTATT
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
5 25 0.83
6 5 0.17
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (5 bp):
ATATA
Found at i:7173069 original size:46 final size:46
Alignment explanation
Indices: 7172999--7173110 Score: 197
Period size: 46 Copynumber: 2.4 Consensus size: 46
7172989 GGTTGTTACA
* * *
7172999 TCTTACACATCTCATATCAGGTTGCCATGGTATCTTTCAACCATGG
1 TCTTACACATTTCATATCAAGTTGCCATGGTATCTTTCAACAATGG
7173045 TCTTACACATTTCATATCAAGTTGCCATGGTATCTTTCAACAATGG
1 TCTTACACATTTCATATCAAGTTGCCATGGTATCTTTCAACAATGG
7173091 TCTTACACATTTCATATCAA
1 TCTTACACATTTCATATCAA
7173111 AGGGCACACT
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
46 63 1.00
ACGTcount: A:0.28, C:0.24, G:0.12, T:0.37
Consensus pattern (46 bp):
TCTTACACATTTCATATCAAGTTGCCATGGTATCTTTCAACAATGG
Found at i:7175196 original size:11 final size:11
Alignment explanation
Indices: 7175180--7175227 Score: 51
Period size: 11 Copynumber: 4.2 Consensus size: 11
7175170 CTTTATATAC
7175180 TAATAAAATAA
1 TAATAAAATAA
*
7175191 TAATAAAATATCT
1 TAATAAAATA--A
* *
7175204 TATTAAAATAT
1 TAATAAAATAA
7175215 TAATAAAATAA
1 TAATAAAATAA
7175226 TA
1 TA
7175228 TTTATCTAAT
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
11 22 0.71
13 9 0.29
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.35
Consensus pattern (11 bp):
TAATAAAATAA
Found at i:7176478 original size:20 final size:18
Alignment explanation
Indices: 7176442--7176486 Score: 65
Period size: 19 Copynumber: 2.4 Consensus size: 18
7176432 AAACCTTGAA
7176442 TTTTCCCTTTCTTCTTTC
1 TTTTCCCTTTCTTCTTTC
7176460 TTTTCTCCTTTCTTTCTTTC
1 TTTTC-CCTTTC-TTCTTTC
7176480 -TTTCCCT
1 TTTTCCCT
7176487 GCTTTTCGTT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
18 8 0.32
19 10 0.40
20 7 0.28
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (18 bp):
TTTTCCCTTTCTTCTTTC
Found at i:7176721 original size:20 final size:20
Alignment explanation
Indices: 7176698--7176737 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
7176688 TATAATTATT
7176698 TAATTAATAAATATATTTTA
1 TAATTAATAAATATATTTTA
7176718 TAATTAATAAATATATTTTA
1 TAATTAATAAATATATTTTA
7176738 ATACTTAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (20 bp):
TAATTAATAAATATATTTTA
Found at i:7176739 original size:18 final size:19
Alignment explanation
Indices: 7176686--7176736 Score: 75
Period size: 20 Copynumber: 2.5 Consensus size: 19
7176676 AAAATATTAT
7176686 AATATAATTATTTAATTAATA
1 AATAT-ATT-TTTAATTAATA
7176707 AATATATTTTATAATTAATA
1 AATATATTTT-TAATTAATA
7176727 AATATATTTT
1 AATATATTTT
7176737 AATACTTAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
19 2 0.07
20 22 0.76
21 5 0.17
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (19 bp):
AATATATTTTTAATTAATA
Found at i:7176873 original size:29 final size:30
Alignment explanation
Indices: 7176840--7176897 Score: 82
Period size: 29 Copynumber: 2.0 Consensus size: 30
7176830 ATTTATCATA
* *
7176840 TAATATTAATTTAATAGTAAT-AAATACAC
1 TAATATTAACTTAATAATAATCAAATACAC
*
7176869 TAATATTTACTTAATAATAATCAAATACA
1 TAATATTAACTTAATAATAATCAAATACA
7176898 TACATGTATT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
29 18 0.72
30 7 0.28
ACGTcount: A:0.52, C:0.09, G:0.02, T:0.38
Consensus pattern (30 bp):
TAATATTAACTTAATAATAATCAAATACAC
Found at i:7180180 original size:6 final size:6
Alignment explanation
Indices: 7180169--7180197 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
7180159 TTAAGGGTTA
7180169 TTTAAT TTTAAT TTTAAT TTTAAT TTTAA
1 TTTAAT TTTAAT TTTAAT TTTAAT TTTAA
7180198 AAAGGGACAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (6 bp):
TTTAAT
Found at i:7180235 original size:13 final size:13
Alignment explanation
Indices: 7180219--7180244 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
7180209 CCTAATCTAC
7180219 AAATAAACCAAAA
1 AAATAAACCAAAA
7180232 AAATAAACCAAAA
1 AAATAAACCAAAA
7180245 GTTTAAAAAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.77, C:0.15, G:0.00, T:0.08
Consensus pattern (13 bp):
AAATAAACCAAAA
Found at i:7183272 original size:9 final size:9
Alignment explanation
Indices: 7183258--7183282 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
7183248 TATTCCAATT
7183258 TTTTTTTTA
1 TTTTTTTTA
7183267 TTTTTTTTA
1 TTTTTTTTA
7183276 TTTTTTT
1 TTTTTTT
7183283 ATAAAAAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.08, C:0.00, G:0.00, T:0.92
Consensus pattern (9 bp):
TTTTTTTTA
Found at i:7184037 original size:22 final size:24
Alignment explanation
Indices: 7184007--7184056 Score: 77
Period size: 23 Copynumber: 2.2 Consensus size: 24
7183997 ACAAATACAC
*
7184007 GAATTTCC-ACCCAAACACA-CCA
1 GAATGTCCAACCCAAACACACCCA
7184029 GAATGTCCAACCCAAACACACCCA
1 GAATGTCCAACCCAAACACACCCA
7184053 GAAT
1 GAAT
7184057 ATTTTAAATC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
22 7 0.28
23 11 0.44
24 7 0.28
ACGTcount: A:0.42, C:0.38, G:0.08, T:0.12
Consensus pattern (24 bp):
GAATGTCCAACCCAAACACACCCA
Found at i:7185511 original size:21 final size:22
Alignment explanation
Indices: 7185481--7185528 Score: 64
Period size: 21 Copynumber: 2.2 Consensus size: 22
7185471 ATATAAAAAC
*
7185481 ATAATGTTAAT-TAATAATTATA
1 ATAATGTTAATATAA-AATCATA
7185503 ATAAT-TTAATATAAAATCATA
1 ATAATGTTAATATAAAATCATA
7185524 ATAAT
1 ATAAT
7185529 AATCATTATA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
21 16 0.67
22 8 0.33
ACGTcount: A:0.54, C:0.02, G:0.02, T:0.42
Consensus pattern (22 bp):
ATAATGTTAATATAAAATCATA
Found at i:7185977 original size:30 final size:29
Alignment explanation
Indices: 7185912--7185978 Score: 75
Period size: 29 Copynumber: 2.3 Consensus size: 29
7185902 GTGTTTAAAC
* *
7185912 AAGCCCTTAACTTATTTTTGTAGTTAAAT
1 AAGCCCTTAACTTATTTTTGTACTCAAAT
7185941 AAGCCCTTAACTTATGATTTT-TACTCATAA-
1 AAGCCCTTAACTTAT--TTTTGTACTCA-AAT
7185971 AAGCCCTT
1 AAGCCCTT
7185979 TATTTTAATA
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
29 15 0.45
30 12 0.36
31 6 0.18
ACGTcount: A:0.31, C:0.19, G:0.09, T:0.40
Consensus pattern (29 bp):
AAGCCCTTAACTTATTTTTGTACTCAAAT
Found at i:7188058 original size:13 final size:13
Alignment explanation
Indices: 7188040--7188065 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
7188030 ATAAAATAGT
7188040 TATTAATTAAAAA
1 TATTAATTAAAAA
7188053 TATTAATTAAAAA
1 TATTAATTAAAAA
7188066 AAGCTTGAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (13 bp):
TATTAATTAAAAA
Found at i:7191848 original size:19 final size:19
Alignment explanation
Indices: 7191824--7191860 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
7191814 TCAAATAAAA
**
7191824 ATATTAAATTAAAAAAATG
1 ATATTAAACAAAAAAAATG
7191843 ATATTAAACAAAAAAAAT
1 ATATTAAACAAAAAAAAT
7191861 TAATAAATAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.68, C:0.03, G:0.03, T:0.27
Consensus pattern (19 bp):
ATATTAAACAAAAAAAATG
Found at i:7199718 original size:5 final size:5
Alignment explanation
Indices: 7199708--7199732 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
7199698 TCAATTAGCC
7199708 TTTTA TTTTA TTTTA TTTTA TTTTA
1 TTTTA TTTTA TTTTA TTTTA TTTTA
7199733 ATTCATTGGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (5 bp):
TTTTA
Found at i:7199781 original size:17 final size:16
Alignment explanation
Indices: 7199753--7199791 Score: 51
Period size: 17 Copynumber: 2.4 Consensus size: 16
7199743 TCATTCATTC
* *
7199753 ATTTATTTGTTTGTAT
1 ATTTATTCGTTTATAT
7199769 ATGTTATTCGTTTATAT
1 AT-TTATTCGTTTATAT
7199786 ATTTAT
1 ATTTAT
7199792 GTTAATTCTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
16 6 0.30
17 14 0.70
ACGTcount: A:0.23, C:0.03, G:0.10, T:0.64
Consensus pattern (16 bp):
ATTTATTCGTTTATAT
Found at i:7200230 original size:25 final size:26
Alignment explanation
Indices: 7200184--7200260 Score: 72
Period size: 25 Copynumber: 3.0 Consensus size: 26
7200174 TTTGTATATA
*
7200184 TCTTTTATATGTTA-ATGATTTTAAAT
1 TCTTTTATATGTTATTTG-TTTTAAAT
*
7200210 TCTTTTAT-TGTTATTTGTTTTGAA-
1 TCTTTTATATGTTATTTGTTTTAAAT
* *
7200234 -CTTTCTATATATTATTTATTTTAAAT
1 TCTTT-TATATGTTATTTGTTTTAAAT
7200260 T
1 T
7200261 TTTATCTTAA
Statistics
Matches: 41, Mismatches: 5, Indels: 9
0.75 0.09 0.16
Matches are distributed among these distances:
23 4 0.10
24 3 0.07
25 24 0.59
26 10 0.24
ACGTcount: A:0.26, C:0.05, G:0.06, T:0.62
Consensus pattern (26 bp):
TCTTTTATATGTTATTTGTTTTAAAT
Found at i:7200365 original size:52 final size:54
Alignment explanation
Indices: 7200239--7200372 Score: 127
Period size: 52 Copynumber: 2.5 Consensus size: 54
7200229 TTGAACTTTC
7200239 TATATATTATTTATTTTAAA-TTTTTATCTTAAAATTTTACTTTGTATTATATTTGTA
1 TATATATTATTTA-TTTAAACTTTTTA--TTAAAATTTTACTTTGTATTATA-TTGTA
* * * *
7200296 TATAAATT-TTCATTTAAACTCTTTTA-TACATTTTTA-TTT-TATTATA-TGTA
1 TATATATTATTTATTTAAACT-TTTTATTAAAATTTTACTTTGTATTATATTGTA
7200346 TATATATTATTTATATTAAACTATTTT
1 TATATATTATTTAT-TTAAACT-TTTT
7200373 TTATTATCAC
Statistics
Matches: 66, Mismatches: 7, Indels: 13
0.77 0.08 0.15
Matches are distributed among these distances:
50 11 0.17
51 4 0.06
52 18 0.27
53 3 0.05
54 8 0.12
55 6 0.09
56 4 0.06
57 12 0.18
ACGTcount: A:0.33, C:0.05, G:0.02, T:0.60
Consensus pattern (54 bp):
TATATATTATTTATTTAAACTTTTTATTAAAATTTTACTTTGTATTATATTGTA
Found at i:7202151 original size:24 final size:23
Alignment explanation
Indices: 7202117--7202177 Score: 77
Period size: 24 Copynumber: 2.6 Consensus size: 23
7202107 GCGCGACCCA
7202117 TTTTTTTAATAATATAATTTTAT
1 TTTTTTTAATAATATAATTTTAT
* *
7202140 TTTTTTTAAATATTATTATTTTAT
1 TTTTTTT-AATAATATAATTTTAT
*
7202164 TATATTTTAATAAT
1 T-TTTTTTAATAAT
7202178 TTTTAAATTT
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
23 7 0.22
24 20 0.62
25 5 0.16
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (23 bp):
TTTTTTTAATAATATAATTTTAT
Found at i:7202459 original size:3 final size:3
Alignment explanation
Indices: 7202400--7202441 Score: 59
Period size: 3 Copynumber: 14.0 Consensus size: 3
7202390 TGCAGCAGCA
*
7202400 AAG AGAG AA- AAG AAG AAG AAA AAG AAG AAG AAG AAG AAG AAG
1 AAG A-AG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
7202442 GAGGAGGAGA
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
2 2 0.06
3 30 0.86
4 3 0.09
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:7203117 original size:26 final size:24
Alignment explanation
Indices: 7203087--7203136 Score: 73
Period size: 26 Copynumber: 2.0 Consensus size: 24
7203077 AAATAAAAAA
*
7203087 ATTTAAAAATATAATAAATCAAATAT
1 ATTTAAAAACATAA-AAA-CAAATAT
7203113 ATTTAAAAACATAAAAACAAATAT
1 ATTTAAAAACATAAAAACAAATAT
7203137 TAAAACAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 7 0.30
25 3 0.13
26 13 0.57
ACGTcount: A:0.64, C:0.06, G:0.00, T:0.30
Consensus pattern (24 bp):
ATTTAAAAACATAAAAACAAATAT
Found at i:7203156 original size:21 final size:21
Alignment explanation
Indices: 7203107--7203165 Score: 59
Period size: 21 Copynumber: 2.8 Consensus size: 21
7203097 ATAATAAATC
*
7203107 AAAT-ATATTTAAAA-ACATAA
1 AAATAATA-TTAAAACAAATAA
*
7203127 AAACAAATATTAAAACAAATAA
1 AAA-TAATATTAAAACAAATAA
*
7203149 AAATAATACTAAAACAA
1 AAATAATATTAAAACAA
7203166 TTCTTAAAAC
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
20 3 0.09
21 18 0.56
22 11 0.34
ACGTcount: A:0.69, C:0.08, G:0.00, T:0.22
Consensus pattern (21 bp):
AAATAATATTAAAACAAATAA
Found at i:7208477 original size:5 final size:5
Alignment explanation
Indices: 7208467--7208498 Score: 57
Period size: 5 Copynumber: 6.6 Consensus size: 5
7208457 TTGTGTGTTC
7208467 TTTAT TTTA- TTTAT TTTAT TTTAT TTTAT TTT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTT
7208499 TCACAAATAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.15
5 22 0.85
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TTTAT
Found at i:7208481 original size:9 final size:9
Alignment explanation
Indices: 7208467--7208497 Score: 53
Period size: 9 Copynumber: 3.3 Consensus size: 9
7208457 TTGTGTGTTC
7208467 TTTATTTTA
1 TTTATTTTA
7208476 TTTATTTTA
1 TTTATTTTA
7208485 TTTTATTTTA
1 -TTTATTTTA
7208495 TTT
1 TTT
7208498 TTCACAAATA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
9 12 0.57
10 9 0.43
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (9 bp):
TTTATTTTA
Found at i:7209547 original size:19 final size:20
Alignment explanation
Indices: 7209496--7209550 Score: 76
Period size: 22 Copynumber: 2.7 Consensus size: 20
7209486 TTAAAAATTA
*
7209496 TTAAAATATAATAATAATAT
1 TTAAAATAAAATAATAATAT
7209516 TTAAAATTTAAAATAATAATAT
1 TTAAAA--TAAAATAATAATAT
7209538 TTAAAA-AAAATAA
1 TTAAAATAAAATAA
7209551 AATTATATTA
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
19 7 0.22
20 6 0.19
22 19 0.59
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (20 bp):
TTAAAATAAAATAATAATAT
Found at i:7214370 original size:22 final size:22
Alignment explanation
Indices: 7214345--7214388 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
7214335 TCATATAAAT
*
7214345 TATAATAAATCTTTAATAGTAA
1 TATAATAAATCTCTAATAGTAA
*
7214367 TATAATAAGTCTCTAATAGTAA
1 TATAATAAATCTCTAATAGTAA
7214389 ACACATAAAG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.48, C:0.07, G:0.07, T:0.39
Consensus pattern (22 bp):
TATAATAAATCTCTAATAGTAA
Found at i:7214396 original size:22 final size:22
Alignment explanation
Indices: 7214348--7214397 Score: 57
Period size: 22 Copynumber: 2.3 Consensus size: 22
7214338 TATAAATTAT
* *
7214348 AATAAATCTTTAATAGTAATAT
1 AATAAATCTCTAATAGTAATAC
*
7214370 AATAAGTCTCTAATAGTAA-AC
1 AATAAATCTCTAATAGTAATAC
7214391 ACATAAA
1 A-ATAAA
7214398 GGAAAGGAGG
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
21 2 0.09
22 21 0.91
ACGTcount: A:0.52, C:0.10, G:0.06, T:0.32
Consensus pattern (22 bp):
AATAAATCTCTAATAGTAATAC
Found at i:7232634 original size:20 final size:20
Alignment explanation
Indices: 7232621--7232673 Score: 65
Period size: 20 Copynumber: 2.7 Consensus size: 20
7232611 TTTTACCATA
7232621 ATTTTTAATATTTTAAATAT
1 ATTTTTAATATTTTAAATAT
*
7232641 ATTTTTAATCA-TTTATATAT
1 ATTTTTAAT-ATTTTAAATAT
*
7232661 -TTTTTAACATTTT
1 ATTTTTAATATTTT
7232674 TTTAAAAAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
18 1 0.03
19 10 0.34
20 17 0.59
21 1 0.03
ACGTcount: A:0.34, C:0.04, G:0.00, T:0.62
Consensus pattern (20 bp):
ATTTTTAATATTTTAAATAT
Found at i:7243012 original size:21 final size:21
Alignment explanation
Indices: 7242988--7243029 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
7242978 GGACTGGTAA
7242988 TCTGGTTTGGCTTTTCTTAAG
1 TCTGGTTTGGCTTTTCTTAAG
7243009 TCTGGTTTGGCTTTTCTTAAG
1 TCTGGTTTGGCTTTTCTTAAG
7243030 CAACATGTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.10, C:0.14, G:0.24, T:0.52
Consensus pattern (21 bp):
TCTGGTTTGGCTTTTCTTAAG
Found at i:7248152 original size:12 final size:13
Alignment explanation
Indices: 7248135--7248163 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
7248125 AAGTAGCCAT
7248135 TTTTCCTTTTC-C
1 TTTTCCTTTTCAC
7248147 TTTTCCTTTTCAC
1 TTTTCCTTTTCAC
7248160 TTTT
1 TTTT
7248164 GTTTTAGTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 11 0.69
13 5 0.31
ACGTcount: A:0.03, C:0.28, G:0.00, T:0.69
Consensus pattern (13 bp):
TTTTCCTTTTCAC
Found at i:7267394 original size:14 final size:14
Alignment explanation
Indices: 7267372--7267401 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
7267362 TTTAATTATT
7267372 ATATGTTTAATGAA
1 ATATGTTTAATGAA
*
7267386 ATATTTTTAATGAA
1 ATATGTTTAATGAA
7267400 AT
1 AT
7267402 TAAAATTCTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.43, C:0.00, G:0.10, T:0.47
Consensus pattern (14 bp):
ATATGTTTAATGAA
Found at i:7267538 original size:33 final size:35
Alignment explanation
Indices: 7267473--7267546 Score: 109
Period size: 35 Copynumber: 2.2 Consensus size: 35
7267463 ATAATTATTT
*
7267473 TTATTAACGTAAAAAAAATCACATTGATATATATG
1 TTATTAACGTAAAAAAAAGCACATTGATATATATG
7267508 TTATTAACGTAAAAAAAAGGCA-ATT-A-ATATATG
1 TTATTAACGTAAAAAAAA-GCACATTGATATATATG
7267541 TTATTA
1 TTATTA
7267547 TAGATAGACA
Statistics
Matches: 37, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
33 13 0.35
34 1 0.03
35 21 0.57
36 2 0.05
ACGTcount: A:0.49, C:0.07, G:0.09, T:0.35
Consensus pattern (35 bp):
TTATTAACGTAAAAAAAAGCACATTGATATATATG
Found at i:7271959 original size:21 final size:21
Alignment explanation
Indices: 7271920--7271960 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
7271910 ATCTGCTCAA
* *
7271920 ACTCCACCTGTTTTAGAGTAC
1 ACTCCACCTGCTGTAGAGTAC
*
7271941 ACTCCACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTAGAGTA
7271961 TTGCTCGTCT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.22, C:0.29, G:0.20, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGTAGAGTAC
Found at i:7288194 original size:28 final size:30
Alignment explanation
Indices: 7288162--7288220 Score: 79
Period size: 28 Copynumber: 2.0 Consensus size: 30
7288152 TCATTATAAC
*
7288162 TTATTGTT-AATATTT-TAA-TATATAATAT
1 TTATT-TTAAATATTTCTAAGTAAATAATAT
7288190 TTATTTTAAATATTTCTAAGTAAATAATAT
1 TTATTTTAAATATTTCTAAGTAAATAATAT
7288220 T
1 T
7288221 AATTATTTAT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
27 2 0.07
28 12 0.44
29 3 0.11
30 10 0.37
ACGTcount: A:0.41, C:0.02, G:0.03, T:0.54
Consensus pattern (30 bp):
TTATTTTAAATATTTCTAAGTAAATAATAT
Found at i:7290601 original size:44 final size:45
Alignment explanation
Indices: 7290548--7290650 Score: 127
Period size: 44 Copynumber: 2.3 Consensus size: 45
7290538 TGTCTTTGAC
* * * *
7290548 ATGGACTTACATGAATTATTCTTGTCTCCAATGCCATA-TATAAT
1 ATGGACTTACATGAATCAATCCTGTCTCCAAAGCCATATTATAAT
** *
7290592 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATTTCTAAT
1 ATGGACTTACATGAATCAATCCTGTCTCCAAAGCCATA-TTATAAT
7290638 ATGGACTTACATG
1 ATGGACTTACATG
7290651 GCTCATTTCT
Statistics
Matches: 50, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
44 32 0.64
46 18 0.36
ACGTcount: A:0.30, C:0.21, G:0.14, T:0.35
Consensus pattern (45 bp):
ATGGACTTACATGAATCAATCCTGTCTCCAAAGCCATATTATAAT
Found at i:7290649 original size:46 final size:44
Alignment explanation
Indices: 7290570--7290655 Score: 136
Period size: 46 Copynumber: 1.9 Consensus size: 44
7290560 GAATTATTCT
*
7290570 TGTCTCCAATGCCATATATAATATGGACTTACATGGCTCAATCC
1 TGTCTCCAAAGCCATATATAATATGGACTTACATGGCTCAATCC
*
7290614 TGTCTCCAAAGCCATATTTCTAATATGGACTTACATGGCTCA
1 TGTCTCCAAAGCCATA--TATAATATGGACTTACATGGCTCA
7290656 TTTCTGTTCT
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
44 15 0.39
46 23 0.61
ACGTcount: A:0.29, C:0.24, G:0.14, T:0.33
Consensus pattern (44 bp):
TGTCTCCAAAGCCATATATAATATGGACTTACATGGCTCAATCC
Found at i:7296633 original size:32 final size:32
Alignment explanation
Indices: 7296592--7296652 Score: 95
Period size: 32 Copynumber: 1.9 Consensus size: 32
7296582 TAAAAAGTAC
* *
7296592 AAAAAATTTAAATATATTGTAATATTTGATTT
1 AAAAAATTTAAATACATTGTAAGATTTGATTT
*
7296624 AAAAAATTTAAGTACATTGTAAGATTTGA
1 AAAAAATTTAAATACATTGTAAGATTTGA
7296653 ATTTCTACCC
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
32 26 1.00
ACGTcount: A:0.48, C:0.02, G:0.10, T:0.41
Consensus pattern (32 bp):
AAAAAATTTAAATACATTGTAAGATTTGATTT
Found at i:7297183 original size:11 final size:11
Alignment explanation
Indices: 7297167--7297207 Score: 82
Period size: 11 Copynumber: 3.7 Consensus size: 11
7297157 CTAGAGAGAG
7297167 AAAAAAATTGA
1 AAAAAAATTGA
7297178 AAAAAAATTGA
1 AAAAAAATTGA
7297189 AAAAAAATTGA
1 AAAAAAATTGA
7297200 AAAAAAAT
1 AAAAAAAT
7297208 CTAGAGAGAG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 30 1.00
ACGTcount: A:0.76, C:0.00, G:0.07, T:0.17
Consensus pattern (11 bp):
AAAAAAATTGA
Found at i:7308821 original size:31 final size:31
Alignment explanation
Indices: 7308786--7308846 Score: 104
Period size: 31 Copynumber: 2.0 Consensus size: 31
7308776 TATAATTTTA
7308786 TTATTAAATTATTCAAAAGTTTTTATTTAAG
1 TTATTAAATTATTCAAAAGTTTTTATTTAAG
* *
7308817 TTATTGAATTATTTAAAAGTTTTTATTTAA
1 TTATTAAATTATTCAAAAGTTTTTATTTAA
7308847 ATGATTAGGT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.38, C:0.02, G:0.07, T:0.54
Consensus pattern (31 bp):
TTATTAAATTATTCAAAAGTTTTTATTTAAG
Found at i:7313399 original size:60 final size:59
Alignment explanation
Indices: 7313306--7313420 Score: 169
Period size: 60 Copynumber: 1.9 Consensus size: 59
7313296 AACAAATTTC
* * * *
7313306 AACAAAGTAATAAATATTATTTTGAGAATATTTTTATCTTTTTTATATTAAATATAGAAT
1 AACAAAGTAATAAACATTATTTTGAGAATATTTTTA-CCTTTTAATATAAAATATAGAAT
7313366 AACAAAGTAATAAACATTATTTTGA-AGATATTTTTACCTTTTAATATAAAATATA
1 AACAAAGTAATAAACATTATTTTGAGA-ATATTTTTACCTTTTAATATAAAATATA
7313421 TAAAATATAT
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
59 17 0.34
60 33 0.66
ACGTcount: A:0.45, C:0.05, G:0.06, T:0.43
Consensus pattern (59 bp):
AACAAAGTAATAAACATTATTTTGAGAATATTTTTACCTTTTAATATAAAATATAGAAT
Found at i:7336935 original size:13 final size:12
Alignment explanation
Indices: 7336917--7336942 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
7336907 AAGTTAATTT
7336917 TATTTTTTAAAA
1 TATTTTTTAAAA
7336929 TATTTTTTAAAA
1 TATTTTTTAAAA
7336941 TA
1 TA
7336943 AATTATTTCC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (12 bp):
TATTTTTTAAAA
Found at i:7338392 original size:14 final size:12
Alignment explanation
Indices: 7338342--7338387 Score: 56
Period size: 12 Copynumber: 3.6 Consensus size: 12
7338332 ATATACATAC
7338342 TTATATATATTT
1 TTATATATATTT
*
7338354 TATATTTTATAATTT
1 T-TA-TATAT-ATTT
7338369 TTATATATATTT
1 TTATATATATTT
7338381 TTATATA
1 TTATATA
7338388 CATATACGTG
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
12 12 0.41
13 6 0.21
14 6 0.21
15 5 0.17
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (12 bp):
TTATATATATTT
Found at i:7340746 original size:19 final size:20
Alignment explanation
Indices: 7340706--7340749 Score: 56
Period size: 19 Copynumber: 2.3 Consensus size: 20
7340696 GTCTCTTTAG
* *
7340706 GCATT-CATTTCATGCATTT
1 GCATTACATTGCATGCATAT
7340725 GCATTACATTGCAT-CATAT
1 GCATTACATTGCATGCATAT
7340744 GCATTA
1 GCATTA
7340750 GATTTTCACG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 15 0.68
20 7 0.32
ACGTcount: A:0.27, C:0.20, G:0.11, T:0.41
Consensus pattern (20 bp):
GCATTACATTGCATGCATAT
Found at i:7343295 original size:7 final size:8
Alignment explanation
Indices: 7343274--7343302 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
7343264 TCTCATGAAT
7343274 TCAAAAAA
1 TCAAAAAA
7343282 TCAAAAAA
1 TCAAAAAA
7343290 TCAAAAAA
1 TCAAAAAA
7343298 TCAAA
1 TCAAA
7343303 GTCAAAATAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.72, C:0.14, G:0.00, T:0.14
Consensus pattern (8 bp):
TCAAAAAA
Found at i:7345498 original size:44 final size:44
Alignment explanation
Indices: 7345449--7345675 Score: 140
Period size: 44 Copynumber: 5.2 Consensus size: 44
7345439 AGTTACAGAT
7345449 CTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAAC
1 CTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAAC
* * * ** * * * * *
7345493 CTTGCC-TCTTTCGGTTGTGATG-G-AGCTGGTTGAAGACAAAAGAT
1 CTTGCCTTCCTGC-ATTGACA-GCGAAGCAGATCGAAGACACAA-AC
* *
7345537 CTTGCTTTTCTGCATTGACAGCGAAGCAGATCGAAGACACAAAC
1 CTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAAC
* * * ** ** * * * * *
7345581 CTTGCC-TCTTTCGGTTGTGATAG-AGCTGGTTGAAGACAAAAGAT
1 CTTGCCTTCCTGC-ATTGACAGCGAAGCAGATCGAAGACACAA-AC
* *
7345625 CTTGCCTTCCTACATTGACAGCGAAGCAGATCAAAGACACAAAC
1 CTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAAC
7345669 CTTGCCT
1 CTTGCCT
7345676 CTTTCGGTTG
Statistics
Matches: 124, Mismatches: 49, Indels: 20
0.64 0.25 0.10
Matches are distributed among these distances:
43 36 0.29
44 53 0.43
45 35 0.28
ACGTcount: A:0.29, C:0.24, G:0.22, T:0.25
Consensus pattern (44 bp):
CTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAAC
Found at i:7345594 original size:88 final size:88
Alignment explanation
Indices: 7345445--7345872 Score: 555
Period size: 88 Copynumber: 4.9 Consensus size: 88
7345435 ATGAAGTTAC
7345445 AGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCTCTTTCGGTTG
1 AGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCTCTTTCGGTTG
7345510 TGATGGAGCTGGTTGAAGACAAA
66 TGATGGAGCTGGTTGAAGACAAA
* *
7345533 AGATCTTGCTTTTCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCTCTTTCGGTTG
1 AGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCTCTTTCGGTTG
*
7345598 TGATAGAGCTGGTTGAAGACAAA
66 TGATGGAGCTGGTTGAAGACAAA
* *
7345621 AGATCTTGCCTTCCTACATTGACAGCGAAGCAGATCAAAGACACAAACCTTGCCTCTTTCGGTTG
1 AGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCTCTTTCGGTTG
*
7345686 TGATAGAGCTGGTTGAAGACAAA
66 TGATGGAGCTGGTTGAAGACAAA
* * * * ** *
7345709 AGATCTTGCCTTCCTACATTAACAGTGAAGCAGATCGAA-A-ACAAAGCCTTGCGTCCATCGATT
1 AGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAA-CCTTGCCTCTTTCGGTT
* * * **
7345772 G-CAGTGGAGCTAGTTAAAGA-AGC
65 GTGA-TGGAGCTGGTTGAAGACAAA
* * * **
7345795 AGATCTTGCCTTCCTGCATTAACAGCAAAGCAGATC-AA-AAACAAAGCCTTGCCTCCATCGGTT
1 AGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAA-CCTTGCCTCTTTCGGTT
*
7345858 G-CATTGGAGCTGGTT
65 GTGA-TGGAGCTGGTT
7345873 AAAGGTTACA
Statistics
Matches: 310, Mismatches: 27, Indels: 8
0.90 0.08 0.02
Matches are distributed among these distances:
85 3 0.01
86 74 0.24
87 28 0.09
88 205 0.66
ACGTcount: A:0.29, C:0.23, G:0.23, T:0.25
Consensus pattern (88 bp):
AGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCTCTTTCGGTTG
TGATGGAGCTGGTTGAAGACAAA
Found at i:7345620 original size:41 final size:41
Alignment explanation
Indices: 7345487--7345620 Score: 94
Period size: 43 Copynumber: 3.1 Consensus size: 41
7345477 GATCGAAGAC
*
7345487 ACAAACCTTGCCTCTTTCGGTTGTGATGGAGCTGGTTGAAG
1 ACAAACCTTGCCTCTTTCGGTTGTGATAGAGCTGGTTGAAG
* ** * * * *
7345528 ACAAAAGATCTTG-CT-TTTCTGCAT-TGACAGCGAAGCAGATCGAAG
1 AC--AA-ACCTTGCCTCTTTC-GGTTGTGATA--G-AGCTGGTTGAAG
7345573 ACACAAACCTTGCCTCTTTCGGTTGTGATAGAGCTGGTTGAAG
1 --ACAAACCTTGCCTCTTTCGGTTGTGATAGAGCTGGTTGAAG
7345616 ACAAA
1 ACAAA
7345621 AGATCTTGCC
Statistics
Matches: 66, Mismatches: 15, Indels: 24
0.63 0.14 0.23
Matches are distributed among these distances:
41 7 0.11
42 7 0.11
43 15 0.23
44 12 0.18
45 15 0.23
46 8 0.12
47 2 0.03
ACGTcount: A:0.28, C:0.20, G:0.25, T:0.28
Consensus pattern (41 bp):
ACAAACCTTGCCTCTTTCGGTTGTGATAGAGCTGGTTGAAG
Found at i:7345717 original size:44 final size:44
Alignment explanation
Indices: 7345493--7345719 Score: 160
Period size: 44 Copynumber: 5.2 Consensus size: 44
7345483 AGACACAAAC
*
7345493 CTTGCCTCTTTCGGTTGTGATGGAGCTGGTTGAAGACAAAAGAT
1 CTTGCCTCTTTCGGTTGTGATAGAGCTGGTTGAAGACAAAAGAT
** * * * * * *
7345537 CTTG-CT-TTTCTGCAT-TGACAGCGAAGCAGATCGAAGACACAA-AC
1 CTTGCCTCTTTC-GGTTGTGATA--G-AGCTGGTTGAAGACAAAAGAT
7345581 CTTGCCTCTTTCGGTTGTGATAGAGCTGGTTGAAGACAAAAGAT
1 CTTGCCTCTTTCGGTTGTGATAGAGCTGGTTGAAGACAAAAGAT
* * * ** ** * * ** * *
7345625 CTTGCCTTCCTAC-ATTGACAGCGAAGCAGATCAAAGACACAA-AC
1 CTTGCC-TCTTTCGGTTGTGATAG-AGCTGGTTGAAGACAAAAGAT
7345669 CTTGCCTCTTTCGGTTGTGATAGAGCTGGTTGAAGACAAAAGAT
1 CTTGCCTCTTTCGGTTGTGATAGAGCTGGTTGAAGACAAAAGAT
7345713 CTTGCCT
1 CTTGCCT
7345720 TCCTACATTA
Statistics
Matches: 128, Mismatches: 43, Indels: 24
0.66 0.22 0.12
Matches are distributed among these distances:
42 7 0.05
43 35 0.27
44 43 0.34
45 35 0.27
46 8 0.06
ACGTcount: A:0.27, C:0.21, G:0.24, T:0.28
Consensus pattern (44 bp):
CTTGCCTCTTTCGGTTGTGATAGAGCTGGTTGAAGACAAAAGAT
Found at i:7346120 original size:43 final size:44
Alignment explanation
Indices: 7346021--7346126 Score: 126
Period size: 44 Copynumber: 2.4 Consensus size: 44
7346011 GATCTTGTCC
* * *
7346021 CCCTGAAGTTACAGTGGAGCAGATTGAAGCCAGAGATCTTATCT
1 CCCTGAAGTTACAGTGGAGCAGATCGAAGACAGAGATCCTATCT
* * **
7346065 CCCTG-AGATTACAGCGGAGCAGATCGAATACA-CTATCCTATCT
1 CCCTGAAG-TTACAGTGGAGCAGATCGAAGACAGAGATCCTATCT
7346108 CCCTGAAGTTACAGTGGAG
1 CCCTGAAGTTACAGTGGAG
7346127 TGGATTAAAT
Statistics
Matches: 52, Mismatches: 8, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
43 25 0.48
44 27 0.52
ACGTcount: A:0.29, C:0.24, G:0.24, T:0.24
Consensus pattern (44 bp):
CCCTGAAGTTACAGTGGAGCAGATCGAAGACAGAGATCCTATCT
Found at i:7346150 original size:43 final size:43
Alignment explanation
Indices: 7346007--7346161 Score: 152
Period size: 43 Copynumber: 3.6 Consensus size: 43
7345997 GATTGGAAAT
* *
7346007 TACA-GATCTTGTCCCCCTGAAGTTACAGTGGAGCAGATTGAA
1 TACAGGATCTTATCTCCCTGAAGTTACAGTGGAGCAGATTGAA
** * *
7346049 GCCAGAGATCTTATCTCCCTG-AGATTACAGCGGAGCAGATCGAA
1 TACAG-GATCTTATCTCCCTGAAG-TTACAGTGGAGCAGATTGAA
** * ** *
7346093 TACACTATCCTATCTCCCTGAAGTTACAGTGGAGTGGATTAAA
1 TACAGGATCTTATCTCCCTGAAGTTACAGTGGAGCAGATTGAA
* *
7346136 TAAAGGATCTTATCTCTCTGAAGTTA
1 TACAGGATCTTATCTCCCTGAAGTTA
7346162 TAGTAGAGTA
Statistics
Matches: 88, Mismatches: 21, Indels: 7
0.76 0.18 0.06
Matches are distributed among these distances:
42 2 0.02
43 51 0.58
44 35 0.40
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (43 bp):
TACAGGATCTTATCTCCCTGAAGTTACAGTGGAGCAGATTGAA
Found at i:7347923 original size:14 final size:12
Alignment explanation
Indices: 7347873--7347918 Score: 56
Period size: 12 Copynumber: 3.6 Consensus size: 12
7347863 ATATACATAC
7347873 TTATATATATTT
1 TTATATATATTT
*
7347885 TATATTTTATAATTT
1 T-TA-TATAT-ATTT
7347900 TTATATATATTT
1 TTATATATATTT
7347912 TTATATA
1 TTATATA
7347919 CATATACGTG
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
12 12 0.41
13 6 0.21
14 6 0.21
15 5 0.17
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (12 bp):
TTATATATATTT
Found at i:7350914 original size:29 final size:28
Alignment explanation
Indices: 7350881--7350936 Score: 69
Period size: 29 Copynumber: 2.0 Consensus size: 28
7350871 TACTAATTTC
7350881 TTAAAAATA-AAAAATATAAAAATTAAATT
1 TTAAAAATACAAAAA-ATAAAAA-TAAATT
* *
7350910 TTAAATATACAAAAAATCAAAATAAAT
1 TTAAAAATACAAAAAATAAAAATAAAT
7350937 GAGAAAATAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
28 5 0.21
29 14 0.58
30 5 0.21
ACGTcount: A:0.68, C:0.04, G:0.00, T:0.29
Consensus pattern (28 bp):
TTAAAAATACAAAAAATAAAAATAAATT
Found at i:7352290 original size:21 final size:21
Alignment explanation
Indices: 7352266--7352305 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
7352256 AAAAGGACAT
7352266 AAAA-CAAAACTCAAAAATTCA
1 AAAATCAAAACT-AAAAATTCA
7352287 AAAATCAAAACTAAAAATT
1 AAAATCAAAACTAAAAATT
7352306 AATATAAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 11 0.61
22 7 0.39
ACGTcount: A:0.68, C:0.15, G:0.00, T:0.17
Consensus pattern (21 bp):
AAAATCAAAACTAAAAATTCA
Found at i:7352846 original size:13 final size:13
Alignment explanation
Indices: 7352828--7352853 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
7352818 TTTGCAAGTA
7352828 AGTTTTTTTTTCT
1 AGTTTTTTTTTCT
7352841 AGTTTTTTTTTCT
1 AGTTTTTTTTTCT
7352854 CAACTACAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.08, C:0.08, G:0.08, T:0.77
Consensus pattern (13 bp):
AGTTTTTTTTTCT
Found at i:7356975 original size:24 final size:24
Alignment explanation
Indices: 7356947--7356994 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
7356937 AGTTTCAAGA
7356947 GAAAAATTTATAGAATACAATAGT
1 GAAAAATTTATAGAATACAATAGT
7356971 GAAAAATTTATAGAATACAATAGT
1 GAAAAATTTATAGAATACAATAGT
7356995 CATGTAGTTG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.54, C:0.04, G:0.12, T:0.29
Consensus pattern (24 bp):
GAAAAATTTATAGAATACAATAGT
Done.