Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100714657
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 3970000 characters in sequence are not A, C, G, or T
File 183 of 318
Found at i:57213993 original size:21 final size:21
Alignment explanation
Indices: 57213967--57214011 Score: 81
Period size: 21 Copynumber: 2.1 Consensus size: 21
57213957 ATTTGTCGAG
*
57213967 GTAAGTTCTTGTAACTAAATT
1 GTAAGTTCGTGTAACTAAATT
57213988 GTAAGTTCGTGTAACTAAATT
1 GTAAGTTCGTGTAACTAAATT
57214009 GTA
1 GTA
57214012 TATGTTTTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.33, C:0.09, G:0.18, T:0.40
Consensus pattern (21 bp):
GTAAGTTCGTGTAACTAAATT
Found at i:57214145 original size:17 final size:19
Alignment explanation
Indices: 57214099--57214145 Score: 50
Period size: 17 Copynumber: 2.7 Consensus size: 19
57214089 CACTAAAGCT
57214099 CGAT-AAATGA-AAGTGCC
1 CGATCAAATGATAAGTGCC
*
57214116 CGATC-AATTATAA-TGCC
1 CGATCAAATGATAAGTGCC
57214133 CGA-CAAATGATAA
1 CGATCAAATGATAA
57214146 ATGATAAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
16 1 0.04
17 22 0.88
18 2 0.08
ACGTcount: A:0.43, C:0.19, G:0.17, T:0.21
Consensus pattern (19 bp):
CGATCAAATGATAAGTGCC
Found at i:57215825 original size:15 final size:17
Alignment explanation
Indices: 57215807--57215838 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
57215797 AGCATAATTT
57215807 TACCAAA-TCA-ATTCA
1 TACCAAACTCACATTCA
57215822 TACCAAACTCACATTCA
1 TACCAAACTCACATTCA
57215839 CAAGTATCAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 7 0.47
16 3 0.20
17 5 0.33
ACGTcount: A:0.44, C:0.31, G:0.00, T:0.25
Consensus pattern (17 bp):
TACCAAACTCACATTCA
Found at i:57222471 original size:26 final size:26
Alignment explanation
Indices: 57222387--57222522 Score: 181
Period size: 26 Copynumber: 5.3 Consensus size: 26
57222377 CTGGAGGCCT
57222387 AGCCTCTTTT-AAT-AACTGGGGCA-A
1 AGCC-CTTTTCAATAAACTGGGGCATA
** *
57222411 AGCCCTTTTCGGTAAACTAGGGCA-A
1 AGCCCTTTTCAATAAACTGGGGCATA
57222436 AGCCCTTTTCAATAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
**
57222462 AGCCCTTTTCGGTAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
*
57222488 AGACCTTTTCAATAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
57222514 AGCCCTTTT
1 AGCCCTTTT
57222523 GCACTTCCTC
Statistics
Matches: 97, Mismatches: 12, Indels: 4
0.86 0.11 0.04
Matches are distributed among these distances:
23 5 0.05
24 5 0.05
25 31 0.32
26 56 0.58
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
AGCCCTTTTCAATAAACTGGGGCATA
Found at i:57222514 original size:52 final size:51
Alignment explanation
Indices: 57222392--57222522 Score: 214
Period size: 52 Copynumber: 2.6 Consensus size: 51
57222382 GGCCTAGCCT
*
57222392 CTTTT-AAT-AACTGGGGCA-AAGCCCTTTTCGGTAAACTAGGGCAAAGCC
1 CTTTTCAATAAACTGGGGCATAAGCCCTTTTCGGTAAACTAGGGCAAAGAC
*
57222440 CTTTTCAATAAACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGAC
1 CTTTTCAATAAACTGGGGCATAAGCCCTTTTCGGTAAACTAGGGCA-AAGAC
57222492 CTTTTCAATAAACTGGGGCATAAGCCCTTTT
1 CTTTTCAATAAACTGGGGCATAAGCCCTTTT
57222523 GCACTTCCTC
Statistics
Matches: 77, Mismatches: 2, Indels: 4
0.93 0.02 0.05
Matches are distributed among these distances:
48 5 0.06
49 3 0.04
50 10 0.13
51 24 0.31
52 35 0.45
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.28
Consensus pattern (51 bp):
CTTTTCAATAAACTGGGGCATAAGCCCTTTTCGGTAAACTAGGGCAAAGAC
Found at i:57222603 original size:11 final size:11
Alignment explanation
Indices: 57222589--57222627 Score: 55
Period size: 11 Copynumber: 3.7 Consensus size: 11
57222579 GCACTTCATA
57222589 CATATCATGTG
1 CATATCATGTG
*
57222600 CATATCA--TA
1 CATATCATGTG
57222609 CATATCATGTG
1 CATATCATGTG
57222620 CATATCAT
1 CATATCAT
57222628 ATCAATCATG
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
9 8 0.33
11 16 0.67
ACGTcount: A:0.33, C:0.21, G:0.10, T:0.36
Consensus pattern (11 bp):
CATATCATGTG
Found at i:57222607 original size:20 final size:20
Alignment explanation
Indices: 57222584--57222646 Score: 96
Period size: 20 Copynumber: 3.2 Consensus size: 20
57222574 CATAAGCACT
57222584 TCATACATATCATGTGCATA
1 TCATACATATCATGTGCATA
57222604 TCATACATATCATGTGCATA
1 TCATACATATCATGTGCATA
57222624 TCATATCA-ATCATGT--ATA
1 TCATA-CATATCATGTGCATA
57222642 TCATA
1 TCATA
57222647 TTCCGCGCAT
Statistics
Matches: 42, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
18 8 0.19
20 32 0.76
21 2 0.05
ACGTcount: A:0.37, C:0.19, G:0.08, T:0.37
Consensus pattern (20 bp):
TCATACATATCATGTGCATA
Found at i:57222644 original size:9 final size:10
Alignment explanation
Indices: 57222589--57222645 Score: 57
Period size: 9 Copynumber: 5.8 Consensus size: 10
57222579 GCACTTCATA
57222589 CATATCATGT
1 CATATCATGT
*
57222599 GCATATCAT-A
1 -CATATCATGT
57222609 CATATCATGT
1 CATATCATGT
*
57222619 GCATATCATAT
1 -CATATCATGT
57222630 CA-ATCATGT
1 CATATCATGT
57222639 -ATATCAT
1 CATATCAT
57222646 ATTCCGCGCA
Statistics
Matches: 39, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
8 1 0.03
9 19 0.49
10 2 0.05
11 17 0.44
ACGTcount: A:0.35, C:0.19, G:0.09, T:0.37
Consensus pattern (10 bp):
CATATCATGT
Found at i:57232232 original size:27 final size:27
Alignment explanation
Indices: 57232194--57232353 Score: 182
Period size: 27 Copynumber: 6.0 Consensus size: 27
57232184 GTTAAGACTT
*
57232194 CAGTTTGTAAAATTACTGAAATACCCC
1 CAGTTTGTAAAATTACTAAAATACCCC
*
57232221 CAGTTTGTAAAATTA-TCGAAATACCCC
1 CAGTTTGTAAAATTACT-AAAATACCCC
*
57232248 CAGTTTGTAAAATTACTAAAATATCCC
1 CAGTTTGTAAAATTACTAAAATACCCC
*
57232275 CAGTTTGTAAAATTACCAAAATA-CCC
1 CAGTTTGTAAAATTACTAAAATACCCC
* ** * *
57232301 TAGTTTGTAAAATTTTTGAAATACCCT
1 CAGTTTGTAAAATTACTAAAATACCCC
* *
57232328 C-GATTTGTGAAATTACCAAAATACCC
1 CAG-TTTGTAAAATTACTAAAATACCC
57232354 ATGTAGTGTA
Statistics
Matches: 114, Mismatches: 15, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
26 23 0.20
27 90 0.79
28 1 0.01
ACGTcount: A:0.38, C:0.20, G:0.10, T:0.32
Consensus pattern (27 bp):
CAGTTTGTAAAATTACTAAAATACCCC
Found at i:57232276 original size:54 final size:53
Alignment explanation
Indices: 57232194--57232353 Score: 205
Period size: 53 Copynumber: 3.0 Consensus size: 53
57232184 GTTAAGACTT
* * *
57232194 CAGTTTGTAAAATTACTGAAATACCCCCAGTTTGTAAAATTATCGAAATACCCC
1 CAGTTTGTAAAATTACTAAAATACCCCCAGTTTGTAAAATTACCAAAATA-CCC
*
57232248 CAGTTTGTAAAATTACTAAAATATCCCCAGTTTGTAAAATTACCAAAATACCC
1 CAGTTTGTAAAATTACTAAAATACCCCCAGTTTGTAAAATTACCAAAATACCC
* ** * * *
57232301 TAGTTTGTAAAATTTTTGAAATACCCTC-GATTTGTGAAATTACCAAAATACCC
1 CAGTTTGTAAAATTACTAAAATACCCCCAG-TTTGTAAAATTACCAAAATACCC
57232354 ATGTAGTGTA
Statistics
Matches: 94, Mismatches: 11, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
52 1 0.01
53 47 0.50
54 46 0.49
ACGTcount: A:0.38, C:0.20, G:0.10, T:0.32
Consensus pattern (53 bp):
CAGTTTGTAAAATTACTAAAATACCCCCAGTTTGTAAAATTACCAAAATACCC
Found at i:57232335 original size:53 final size:52
Alignment explanation
Indices: 57232194--57232353 Score: 205
Period size: 54 Copynumber: 3.0 Consensus size: 52
57232184 GTTAAGACTT
* *
57232194 CAGTTTGTAAAATTACTGAAATACCCCCAGTTTGTAAAATTATCGAAATACCCC
1 CAGTTTGTAAAATTACTGAAATA-CCCCAGTTTGTAAAATTACCAAAATA-CCC
*
57232248 CAGTTTGTAAAATTACTAAAATATCCCCAGTTTGTAAAATTACCAAAATACCC
1 CAGTTTGTAAAATTACTGAAATA-CCCCAGTTTGTAAAATTACCAAAATACCC
* ** *
57232301 TAGTTTGTAAAATTTTTGAAATACCCTC-GATTTGTGAAATTACCAAAATACCC
1 CAGTTTGTAAAATTACTGAAATACCC-CAG-TTTGTAAAATTACCAAAATACCC
57232354 ATGTAGTGTA
Statistics
Matches: 95, Mismatches: 9, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
52 4 0.04
53 45 0.47
54 46 0.48
ACGTcount: A:0.38, C:0.20, G:0.10, T:0.32
Consensus pattern (52 bp):
CAGTTTGTAAAATTACTGAAATACCCCAGTTTGTAAAATTACCAAAATACCC
Found at i:57232385 original size:27 final size:27
Alignment explanation
Indices: 57232337--57232409 Score: 85
Period size: 27 Copynumber: 2.7 Consensus size: 27
57232327 TCGATTTGTG
* * *
57232337 AAATTACCAAAATACCCATGT-AGTGTA
1 AAATGACCATAATACCCCTGTAAG-GTA
* *
57232364 AAATGACCGTAATGCCCCTGTAAGGTA
1 AAATGACCATAATACCCCTGTAAGGTA
57232391 AAATGACCATAATACCCCT
1 AAATGACCATAATACCCCT
57232410 ATATGGTAGA
Statistics
Matches: 38, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
27 36 0.95
28 2 0.05
ACGTcount: A:0.40, C:0.23, G:0.14, T:0.23
Consensus pattern (27 bp):
AAATGACCATAATACCCCTGTAAGGTA
Found at i:57232417 original size:27 final size:27
Alignment explanation
Indices: 57232361--57232422 Score: 79
Period size: 27 Copynumber: 2.3 Consensus size: 27
57232351 CCCATGTAGT
* * *
57232361 GTAAAATGACCGTAATGCCCCTGTAAG
1 GTAAAATGACCATAATACCCCTATAAG
*
57232388 GTAAAATGACCATAATACCCCTATATG
1 GTAAAATGACCATAATACCCCTATAAG
*
57232415 GTAGAATG
1 GTAAAATG
57232423 GCGATTATGC
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.37, C:0.19, G:0.19, T:0.24
Consensus pattern (27 bp):
GTAAAATGACCATAATACCCCTATAAG
Found at i:57234719 original size:40 final size:40
Alignment explanation
Indices: 57234671--57234862 Score: 278
Period size: 40 Copynumber: 4.8 Consensus size: 40
57234661 ATAACAACTC
57234671 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGTCACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGTCACTA
* * *
57234711 GCATAAATGCCTTCGGGACTTAGCCCGGATATAGTCGCTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGTCACTA
* * *
57234751 GCAAAAATGCCTTCGGGTCTTAGCCCAGATATAG-CAACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGTC-ACTA
* *
57234791 GCACAAATGCCTTCGGATCTTAGTCCGGATATAGTCACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGTCACTA
* *
57234831 GCACAAAAGCCTTCGGGACTTAGCCCGGATAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAT
57234863 CATTCGAATA
Statistics
Matches: 133, Mismatches: 17, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
39 1 0.01
40 131 0.98
41 1 0.01
ACGTcount: A:0.27, C:0.26, G:0.22, T:0.24
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGTCACTA
Found at i:57239711 original size:28 final size:28
Alignment explanation
Indices: 57239678--57239780 Score: 134
Period size: 28 Copynumber: 3.7 Consensus size: 28
57239668 ACTGCATGAC
* *
57239678 TATGAATGTGATTGGGCCTGACGGGTCA
1 TATGAATGTGATTGGGCCTGATGGGCCA
*
57239706 TATGAAAGTGATTGGGCCTGATGGGCCA
1 TATGAATGTGATTGGGCCTGATGGGCCA
* * *
57239734 TACGAATGTGGTTGGGCCCGATGGGCCA
1 TATGAATGTGATTGGGCCTGATGGGCCA
* *
57239762 TATAAATGAGATTGGGCCT
1 TATGAATGTGATTGGGCCT
57239781 AAAGGGGCCA
Statistics
Matches: 63, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
28 63 1.00
ACGTcount: A:0.23, C:0.16, G:0.35, T:0.26
Consensus pattern (28 bp):
TATGAATGTGATTGGGCCTGATGGGCCA
Found at i:57240924 original size:48 final size:48
Alignment explanation
Indices: 57240863--57242120 Score: 2084
Period size: 48 Copynumber: 26.0 Consensus size: 48
57240853 ATATACACAC
* * *
57240863 ATCTCCTATATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
57240911 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
57240959 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
57241007 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
57241055 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
57241103 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
57241151 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
57241199 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
57241247 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACACATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
57241295 ATCTCATATATATATACATATTTCACACTAGCCATTCGGCTTTACCACACATACAT
1 ATCTC--------ATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* * *
57241351 ATCTCATATATATTTCACACTAGCCATTCGGCTTTACCACACATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* * *
57241399 ATCTCATATATATTTCACACTAGCCATTCGGCTTTACCACAGATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
57241447 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
57241495 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
57241543 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
57241591 ATCTCATACATATTTCACATTAGCTATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
57241639 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACACATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
57241687 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACACATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
57241735 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
57241783 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACAACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* * *
57241831 ATCTCATATATATTTCACACTAGCCATTCGGCTTTACCACACATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
57241879 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
57241927 ATCTCATACATATTTCACATTAGCCATTAGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
57241975 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACACATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* * *
57242023 ATCTCATATATATATCACATTAGCCATTCGGCTTTACCACAGATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
57242071 ATCTCATACATATTTCACATTAGCCATTTGGCTTTACCACATATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
57242119 AT
1 AT
57242121 TTATCTTGCA
Statistics
Matches: 1161, Mismatches: 41, Indels: 16
0.95 0.03 0.01
Matches are distributed among these distances:
48 1113 0.96
56 48 0.04
ACGTcount: A:0.32, C:0.27, G:0.06, T:0.35
Consensus pattern (48 bp):
ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
Found at i:57248374 original size:27 final size:27
Alignment explanation
Indices: 57248277--57248381 Score: 124
Period size: 27 Copynumber: 4.0 Consensus size: 27
57248267 AACATCCCAG
*
57248277 TTTGTAAAATTACCAAAATACCC--AA
1 TTTGTAAAATTACCAAAATACCCTTGA
* * **
57248302 TTTGTAAAATTACCGAAACACCCCCGA
1 TTTGTAAAATTACCAAAATACCCTTGA
*
57248329 TTTGTAAAATTATCAAAATACCCTTGA
1 TTTGTAAAATTACCAAAATACCCTTGA
* *
57248356 TTTGTGAAATTACTAAAATACCCTTG
1 TTTGTAAAATTACCAAAATACCCTTG
57248382 TAGTGTAAAA
Statistics
Matches: 67, Mismatches: 11, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
25 21 0.31
27 46 0.69
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.31
Consensus pattern (27 bp):
TTTGTAAAATTACCAAAATACCCTTGA
Found at i:57268115 original size:27 final size:28
Alignment explanation
Indices: 57268031--57268126 Score: 124
Period size: 27 Copynumber: 3.4 Consensus size: 28
57268021 CATGAGATTG
* * *
57268031 GCACTAAGTGTGCGGGTTTAAATTGT-TCA
1 GCACTAAGTGTGCGAGTTT-GATTATAT-A
57268060 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
57268088 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
57268115 GCACTGAGTGTG
1 GCACTAAGTGTG
57268127 TGGACTTAAT
Statistics
Matches: 62, Mismatches: 4, Indels: 4
0.89 0.06 0.06
Matches are distributed among these distances:
27 22 0.35
28 21 0.34
29 19 0.31
ACGTcount: A:0.26, C:0.12, G:0.28, T:0.33
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:57268141 original size:29 final size:27
Alignment explanation
Indices: 57268059--57268142 Score: 87
Period size: 27 Copynumber: 3.0 Consensus size: 27
57268049 TAAATTGTTC
* *
57268059 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTAATTATAT
* *
57268087 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTAATTATAT
* *
57268114 AGCACTGAGTGTGTGGACTTAATATATAT
1 AGCACTAAGTGTG-CGACTTAAT-TATAT
57268143 TTTTGAATCA
Statistics
Matches: 49, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
27 22 0.45
28 22 0.45
29 5 0.10
ACGTcount: A:0.30, C:0.11, G:0.25, T:0.35
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTAATTATAT
Found at i:57276152 original size:27 final size:28
Alignment explanation
Indices: 57276068--57276165 Score: 128
Period size: 27 Copynumber: 3.5 Consensus size: 28
57276058 CATGAGATTG
* * *
57276068 GCACTAAGTGTGCGGGTTTAAATTGT-TCA
1 GCACTAAGTGTGCGAGTTT-GATTATAT-A
57276097 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
57276125 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
57276152 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
57276166 GACTTAATAT
Statistics
Matches: 64, Mismatches: 4, Indels: 4
0.89 0.06 0.06
Matches are distributed among these distances:
27 24 0.38
28 21 0.33
29 19 0.30
ACGTcount: A:0.26, C:0.13, G:0.29, T:0.33
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:57276179 original size:29 final size:27
Alignment explanation
Indices: 57276096--57276179 Score: 96
Period size: 27 Copynumber: 3.0 Consensus size: 27
57276086 TAAATTGTTC
* *
57276096 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTAATTATAT
* *
57276124 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTAATTATAT
*
57276151 AGCACTGAGTGTGCGGACTTAATATATAT
1 AGCACTAAGTGTGC-GACTTAAT-TATAT
57276180 TTTTGAATCA
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
27 23 0.46
28 22 0.44
29 5 0.10
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTAATTATAT
Found at i:57280391 original size:29 final size:31
Alignment explanation
Indices: 57280353--57280414 Score: 94
Period size: 31 Copynumber: 2.1 Consensus size: 31
57280343 GAATATTATA
57280353 ATGTGGTTAGAT-A-ATATATTTTATA-ATC
1 ATGTGGTTAGATAATATATATTTTATATATC
57280381 ATGTGGGTTAGATAATATATATTTTATATATC
1 ATGT-GGTTAGATAATATATATTTTATATATC
57280413 AT
1 AT
57280415 ACCACAATAA
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
28 4 0.13
29 8 0.27
30 1 0.03
31 12 0.40
32 5 0.17
ACGTcount: A:0.35, C:0.03, G:0.15, T:0.47
Consensus pattern (31 bp):
ATGTGGTTAGATAATATATATTTTATATATC
Found at i:57283027 original size:50 final size:48
Alignment explanation
Indices: 57282913--57283145 Score: 247
Period size: 50 Copynumber: 4.8 Consensus size: 48
57282903 ATATCGGTGC
* * * ** *
57282913 CGATGCCATGTCCTAAACATGGTCTTACACTGGCACTCCTC-TCGAGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCACTCCTCGTCCTGT
* * * * *
57282960 CAATGCCATATCCCAGACATGGTCTTACACTAACTCTTCTCTGTCCATGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCACTCCTC-GTCC-TGT
57283010 CGATGCCATGTCCCAGACATGGTCTTACACTAGCACTCCTCAGT-CTGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCACTCCTC-GTCCTGT
* *
57283058 ACCGATGCCATGTCCTAGACATGGTCTTACACTGGCACTCCTCGAT-CTGT
1 --CGATGCCATGTCCCAGACATGGTCTTACACTAGCACTCCTCG-TCCTGT
*
57283108 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCAC
1 --CGATGCCATGTCCCAGACATGGTCTTACACTAGCAC
57283146 ACTTACTGCC
Statistics
Matches: 159, Mismatches: 21, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
47 33 0.21
48 3 0.02
49 4 0.03
50 119 0.75
ACGTcount: A:0.21, C:0.33, G:0.18, T:0.27
Consensus pattern (48 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTAGCACTCCTCGTCCTGT
Found at i:57283119 original size:100 final size:97
Alignment explanation
Indices: 57282909--57283145 Score: 298
Period size: 100 Copynumber: 2.4 Consensus size: 97
57282899 TCACATATCG
* *
57282909 GTGCCGATGCCATGTCCTAAACATGGTCTTACACTGGCACTCCTCTCGAGCCAATGCCATATCCC
1 GTGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCACTCCTCTCGAGCCAATGCCATATCCC
* *
57282974 AGACATGGTCTTACACTAACTCTTCTCTGTCC
66 AGACATGGTCTTACACTAACACTCCTCTGTCC
* * * * *
57283006 ATGTCGATGCCATGTCCCAGACATGGTCTTACACTAGCACTCCTCAGTCTGTA-CCGATGCCATG
1 GTGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCACTCCTC--TC-G-AGCCAATGCCATA
* ** *
57283070 TCCTAGACATGGTCTTACACTGGCACTCCTC-GATCT
62 TCCCAGACATGGTCTTACACTAACACTCCTCTG-TCC
57283106 GTGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCAC
1 GTGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCAC
57283146 ACTTACTGCC
Statistics
Matches: 119, Mismatches: 16, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
97 40 0.34
99 3 0.03
100 75 0.63
101 1 0.01
ACGTcount: A:0.21, C:0.33, G:0.19, T:0.27
Consensus pattern (97 bp):
GTGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCACTCCTCTCGAGCCAATGCCATATCCC
AGACATGGTCTTACACTAACACTCCTCTGTCC
Found at i:57283215 original size:44 final size:44
Alignment explanation
Indices: 57283166--57283258 Score: 168
Period size: 44 Copynumber: 2.1 Consensus size: 44
57283156 ATGGTCCAAC
*
57283166 CATGGTCTTTTCCGTCAATTCTTTCTTAATTGCCATGTTATAAA
1 CATGGTCTTTTCCGTCAATTCTTCCTTAATTGCCATGTTATAAA
57283210 CATGGTCTTTTCCGTCAATTCTTCCTTAATTGCCATGTTATAAA
1 CATGGTCTTTTCCGTCAATTCTTCCTTAATTGCCATGTTATAAA
*
57283254 AATGG
1 CATGG
57283259 ACCTTGAGAT
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
44 47 1.00
ACGTcount: A:0.24, C:0.20, G:0.13, T:0.43
Consensus pattern (44 bp):
CATGGTCTTTTCCGTCAATTCTTCCTTAATTGCCATGTTATAAA
Found at i:57284729 original size:183 final size:183
Alignment explanation
Indices: 57284421--57284787 Score: 734
Period size: 183 Copynumber: 2.0 Consensus size: 183
57284411 AATTTCTATT
57284421 TAAGGACCTCTACTTTAAACTCTCATTTCAGTTAAGTACTTTATGAACTAGAACACATATTTTGC
1 TAAGGACCTCTACTTTAAACTCTCATTTCAGTTAAGTACTTTATGAACTAGAACACATATTTTGC
57284486 AACTTTTGCAAATAAATCCTAATAGACAAATTAAACATGCAATCTATAAAATTCTTATCGTTAGT
66 AACTTTTGCAAATAAATCCTAATAGACAAATTAAACATGCAATCTATAAAATTCTTATCGTTAGT
57284551 CTAACACATGCATCCAATCAATCGGTAAATCATGATAATTCATCATAATAAAC
131 CTAACACATGCATCCAATCAATCGGTAAATCATGATAATTCATCATAATAAAC
57284604 TAAGGACCTCTACTTTAAACTCTCATTTCAGTTAAGTACTTTATGAACTAGAACACATATTTTGC
1 TAAGGACCTCTACTTTAAACTCTCATTTCAGTTAAGTACTTTATGAACTAGAACACATATTTTGC
57284669 AACTTTTGCAAATAAATCCTAATAGACAAATTAAACATGCAATCTATAAAATTCTTATCGTTAGT
66 AACTTTTGCAAATAAATCCTAATAGACAAATTAAACATGCAATCTATAAAATTCTTATCGTTAGT
57284734 CTAACACATGCATCCAATCAATCGGTAAATCATGATAATTCATCATAATAAAC
131 CTAACACATGCATCCAATCAATCGGTAAATCATGATAATTCATCATAATAAAC
57284787 T
1 T
57284788 TTTCTATTTC
Statistics
Matches: 184, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
183 184 1.00
ACGTcount: A:0.39, C:0.19, G:0.09, T:0.33
Consensus pattern (183 bp):
TAAGGACCTCTACTTTAAACTCTCATTTCAGTTAAGTACTTTATGAACTAGAACACATATTTTGC
AACTTTTGCAAATAAATCCTAATAGACAAATTAAACATGCAATCTATAAAATTCTTATCGTTAGT
CTAACACATGCATCCAATCAATCGGTAAATCATGATAATTCATCATAATAAAC
Found at i:57298838 original size:27 final size:28
Alignment explanation
Indices: 57298754--57298851 Score: 128
Period size: 27 Copynumber: 3.5 Consensus size: 28
57298744 CATGAGATTG
* * *
57298754 GCACTAAGTGTGCGGGTTTAAATTGT-TCA
1 GCACTAAGTGTGCGAGTTT-GATTATAT-A
57298783 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
57298811 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
57298838 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
57298852 GACTTAATAT
Statistics
Matches: 64, Mismatches: 4, Indels: 4
0.89 0.06 0.06
Matches are distributed among these distances:
27 24 0.38
28 21 0.33
29 19 0.30
ACGTcount: A:0.26, C:0.13, G:0.29, T:0.33
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:57298865 original size:29 final size:27
Alignment explanation
Indices: 57298782--57298865 Score: 96
Period size: 27 Copynumber: 3.0 Consensus size: 27
57298772 TAAATTGTTC
* *
57298782 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTAATTATAT
* *
57298810 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTAATTATAT
*
57298837 AGCACTGAGTGTGCGGACTTAATATATAT
1 AGCACTAAGTGTGC-GACTTAAT-TATAT
57298866 TTTGAATCAT
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
27 23 0.46
28 22 0.44
29 5 0.10
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTAATTATAT
Found at i:57300988 original size:18 final size:18
Alignment explanation
Indices: 57300965--57301027 Score: 108
Period size: 18 Copynumber: 3.5 Consensus size: 18
57300955 ATGACTGAAA
57300965 GTGAATATCTGGATGTGT
1 GTGAATATCTGGATGTGT
* *
57300983 GTGAATATCCGAATGTGT
1 GTGAATATCTGGATGTGT
57301001 GTGAATATCTGGATGTGT
1 GTGAATATCTGGATGTGT
57301019 GTGAATATC
1 GTGAATATC
57301028 CAACAATGCT
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 41 1.00
ACGTcount: A:0.25, C:0.08, G:0.30, T:0.37
Consensus pattern (18 bp):
GTGAATATCTGGATGTGT
Found at i:57303778 original size:26 final size:26
Alignment explanation
Indices: 57303729--57303780 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
57303719 TACGTTACTG
**
57303729 TTACTGGCAGCTTTGCTGTGATATTA
1 TTACTGGCAGCTTTGCTGCAATATTA
57303755 TTACTGGCAGCTTTGCTGCAATATTA
1 TTACTGGCAGCTTTGCTGCAATATTA
57303781 GTGTGTTGGT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.21, C:0.17, G:0.21, T:0.40
Consensus pattern (26 bp):
TTACTGGCAGCTTTGCTGCAATATTA
Found at i:57310324 original size:93 final size:93
Alignment explanation
Indices: 57310213--57310383 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
57310203 GCCCCTAAGT
*
57310213 GAACTCAGACTCAACTCAACGAGCTCGGGCATTCGCATCCATAAATGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
*
57310278 CGAGTTTGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * * *
57310306 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
57310371 CGAGTTCGGATGC
66 CGAGTTCGGATGC
57310384 TCAACCATCC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:57310380 original size:46 final size:46
Alignment explanation
Indices: 57310208--57310380 Score: 199
Period size: 46 Copynumber: 3.7 Consensus size: 46
57310198 AACCCGCCCC
* * * *
57310208 TAAGTGAACTCAGACTCAACTCAACGAGCTCGGGCATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
* * * *
57310254 TAAATGAACTCGGACTCAACTCAACGAGTTTGGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCATCCA
* *
57310302 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
57310347 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
57310381 TGCTCAACCA
Statistics
Matches: 105, Mismatches: 15, Indels: 14
0.78 0.11 0.10
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 58 0.55
47 28 0.27
48 2 0.02
49 2 0.02
50 5 0.05
ACGTcount: A:0.31, C:0.27, G:0.20, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
Found at i:57315803 original size:93 final size:93
Alignment explanation
Indices: 57315692--57315862 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
57315682 GCCCCTAAGT
*
57315692 GAACTCAGACTCAACTCAACGAGCTCGGGCATTCGCATCCATAAATGAACTCAGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCAGACTCAACTCAA
*
57315757 CGAGTTTGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * * * *
57315785 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCAGACTCAACTCAA
57315850 CGAGTTCGGATGC
66 CGAGTTCGGATGC
57315863 TCAACCATCC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.22
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCAGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:57315859 original size:46 final size:46
Alignment explanation
Indices: 57315687--57315859 Score: 190
Period size: 46 Copynumber: 3.7 Consensus size: 46
57315677 AACCCGCCCC
* * *
57315687 TAAGTGAACTCAGACTCAACTCAACGAGCTCGGGCATTCGCATCCA
1 TAAGTGAACTCAGACTCAACTCAACGAGTTCGGACATTTGCATCCA
* * * *
57315733 TAAATGAACTCAGACTCAACTCAACGAGTTTGGATGCCTAGTTACAT-C-
1 TAAGTGAACTCAGACTCAACTCAACGAGTTCGGA---C-ATTTGCATCCA
* * *
57315781 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCAGACTCAACTCAACGAGTTCGGACATTTGCATCCA
*
57315826 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCAGACTCAACTCAACGAGTTCGGA
57315860 TGCTCAACCA
Statistics
Matches: 105, Mismatches: 15, Indels: 14
0.78 0.11 0.10
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 59 0.56
47 27 0.26
48 2 0.02
49 2 0.02
50 5 0.05
ACGTcount: A:0.31, C:0.27, G:0.19, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCAGACTCAACTCAACGAGTTCGGACATTTGCATCCA
Found at i:57322722 original size:40 final size:40
Alignment explanation
Indices: 57322624--57322793 Score: 225
Period size: 40 Copynumber: 4.3 Consensus size: 40
57322614 TCCTCGTTCA
* ** *
57322624 AATGCCTTCGGGACATAGCCCGGATTTAGTAACTCACAC-
1 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
*
57322663 AATGCCTTCGGGACATAACCCGGATTTAACAATTCGCACG
1 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
*
57322703 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
* ** * *
57322743 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
*
57322783 AAGGCCTTCGG
1 AATGCCTTCGG
57322794 ATCTTAGTCC
Statistics
Matches: 118, Mismatches: 12, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 34 0.29
40 84 0.71
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
Found at i:57322725 original size:79 final size:80
Alignment explanation
Indices: 57322624--57322770 Score: 233
Period size: 79 Copynumber: 1.9 Consensus size: 80
57322614 TCCTCGTTCA
* **
57322624 AATGCCTTCGGGACATAGCCCGGATTTAGTAACTCACAC-AATGCCTTCGGGACATAACCCGGAT
1 AATGCCTTCGGGACATAACCCGGATTTAACAACTCACACGAATGCCTTCGGGACATAACCCGGAT
57322688 TTAACAATTCGCACG
66 TTAACAATTCGCACG
* * *
57322703 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACGAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACATAACCCGGATTTAACAACTCACACGAATGCCTTCGGGACATAACCCGGAT
57322768 TTA
66 TTA
57322771 GTATCTCGCA
Statistics
Matches: 61, Mismatches: 6, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
79 34 0.56
80 27 0.44
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.24
Consensus pattern (80 bp):
AATGCCTTCGGGACATAACCCGGATTTAACAACTCACACGAATGCCTTCGGGACATAACCCGGAT
TTAACAATTCGCACG
Found at i:57322806 original size:80 final size:79
Alignment explanation
Indices: 57322622--57322846 Score: 222
Period size: 80 Copynumber: 2.8 Consensus size: 79
57322612 GCTCCTCGTT
* * * ** * *
57322622 CAAATGCCTTCGGGACATAGCCCGGATTTAGTAACTCACACAATGCCTTCGGGACATAACCCGGA
1 CAAAGGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACAATGCCTTCGGGACTTAACCCGGA
57322687 TTTAACAATTCGCA
66 TTTAACAATTCGCA
* *
57322701 CGAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACGAATGCCTTCGGGACTTAACCCGG
1 CAAAGGCCTTCGGGACTTAACCCGGATTTAACAACTCGCAC-AATGCCTTCGGGACTTAACCCGG
**
57322766 ATTT-AGTATCTCGCA
65 ATTTAACAAT-TCGCA
** * * * * *
57322781 CAAAGGCCTTC-GGATCTTAGTCCGGATATATTC-ACTTAGCACAAAGCCTTCGGGACTTAGCCC
1 CAAAGGCCTTCGGGA-CTTAACCCGGATTTA-ACAAC-TCGCACAATGCCTTCGGGACTTAACCC
57322844 GGA
63 GGA
57322847 CAGCATTCAA
Statistics
Matches: 123, Mismatches: 18, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
79 41 0.33
80 76 0.62
81 6 0.05
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (79 bp):
CAAAGGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACAATGCCTTCGGGACTTAACCCGGA
TTTAACAATTCGCA
Found at i:57322846 original size:120 final size:119
Alignment explanation
Indices: 57322624--57322846 Score: 279
Period size: 120 Copynumber: 1.9 Consensus size: 119
57322614 TCCTCGTTCA
* * *
57322624 AATGCCTTCGGGACATAGCCCGGATTTAGTAACTCACACAATGCCTTCGGGACATAACCCGGATT
1 AATGCCTTCGGGACATAACCCGGATTTAGTAACTCACACAAGGCCTTCGGGACATAACCCGGATA
* *
57322689 TAACAATTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
66 TAACAATTAGCACGAAAGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
* * * * **
57322743 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTC-GGATCTTAGTCCGGA
1 AATGCCTTCGGGACATAACCCGGATTTAGTAACTCACAC-AAGGCCTTCGGGA-CATAACCCGGA
* * *
57322807 TATATTCACTTAGCAC-AAAGCCTTCGGGACTTAGCCCGGA
64 TATA-ACAATTAGCACGAAAGCCTTCGGGACTTAACCCGGA
57322847 CAGCATTCAA
Statistics
Matches: 87, Mismatches: 14, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
119 38 0.44
120 41 0.47
121 8 0.09
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (119 bp):
AATGCCTTCGGGACATAACCCGGATTTAGTAACTCACACAAGGCCTTCGGGACATAACCCGGATA
TAACAATTAGCACGAAAGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
Found at i:57322855 original size:41 final size:41
Alignment explanation
Indices: 57322778--57322855 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
57322768 TTAGTATCTC
* * *
57322778 GCACAAAGGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
57322819 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAAGGCCTTC-GGATCTTAGCCCGGACA-CATTCA
57322856 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (41 bp):
GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:57336093 original size:30 final size:30
Alignment explanation
Indices: 57336059--57336119 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 30
57336049 TTCCCGAGCC
57336059 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
1 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
* * *
57336089 TAGGGGCAAAATTGTAATTTTGCAAAAGTT
1 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
57336119 T
1 T
57336120 GGGTTAAGGA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.39, C:0.07, G:0.25, T:0.30
Consensus pattern (30 bp):
TAGGGGCAAAAGTGTAAATATGCAAAAGTT
Found at i:57343317 original size:49 final size:48
Alignment explanation
Indices: 57343245--57343438 Score: 192
Period size: 49 Copynumber: 3.9 Consensus size: 48
57343235 GCCGAAGCTA
* *
57343245 TCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAGCAG
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCA-CAG
* *
57343294 TCTGGTACACATAGTAGCCTGCACTTAGTACTGCACACGTGACCTCACCA-
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGA-C-CA-CAG
** * * ** *
57343344 TCTAATACACGTAGTAGCCTGCACTTAGAACTACACACATGATCACAG
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCACAG
* * *
57343392 TTTCCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACC
1 --T-CTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACC
57343439 TCACAATAGA
Statistics
Matches: 117, Mismatches: 22, Indels: 10
0.79 0.15 0.07
Matches are distributed among these distances:
47 2 0.02
48 2 0.02
49 38 0.32
50 38 0.32
51 37 0.32
ACGTcount: A:0.28, C:0.29, G:0.19, T:0.24
Consensus pattern (48 bp):
TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCACAG
Found at i:57343324 original size:23 final size:23
Alignment explanation
Indices: 57343249--57343324 Score: 55
Period size: 25 Copynumber: 3.2 Consensus size: 23
57343239 AAGCTATCTG
*
57343249 GTACGCATAGTAGCCTGCACTTA
1 GTACACATAGTAGCCTGCACTTA
* * * * *
57343272 GTACTACACA-TGCGACCAGCAGTCTG
1 GTAC-ACATAGT-AG-CCTGCACT-TA
57343298 GTACACATAGTAGCCTGCACTTA
1 GTACACATAGTAGCCTGCACTTA
57343321 GTAC
1 GTAC
57343325 TGCACACGTG
Statistics
Matches: 37, Mismatches: 11, Indels: 10
0.64 0.19 0.17
Matches are distributed among these distances:
23 10 0.27
24 10 0.27
25 11 0.30
26 6 0.16
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.24
Consensus pattern (23 bp):
GTACACATAGTAGCCTGCACTTA
Found at i:57343381 original size:50 final size:49
Alignment explanation
Indices: 57343254--57343438 Score: 167
Period size: 50 Copynumber: 3.7 Consensus size: 49
57343244 ATCTGGTACG
* * **
57343254 CATAGTAGCCTGCACTTAGTACTACACATGCGACCAGCAGTCTGGTACA
1 CATAGTAGCCTGCACTTAGTACTACACACGCGACCACCAGTCTAATACA
* *
57343303 CATAGTAGCCTGCACTTAGTACTGCACACGTGACCTCACCA-TCTAATACA
1 CATAGTAGCCTGCACTTAGTACTACACACGCGA-C-CACCAGTCTAATACA
* * ** * *** *
57343353 CGTAGTAGCCTGCACTTAGAACTACACACATGATCA-CAGTTTCCGGGTACG
1 CATAGTAGCCTGCACTTAGTACTACACACGCGACCACCAG--T-CTAATACA
*
57343404 CATAGTAGCCTGCACTTAGTACTACACATGCGACC
1 CATAGTAGCCTGCACTTAGTACTACACACGCGACC
57343439 TCACAATAGA
Statistics
Matches: 109, Mismatches: 21, Indels: 10
0.78 0.15 0.07
Matches are distributed among these distances:
47 2 0.02
48 2 0.02
49 30 0.28
50 38 0.35
51 37 0.34
ACGTcount: A:0.29, C:0.30, G:0.18, T:0.23
Consensus pattern (49 bp):
CATAGTAGCCTGCACTTAGTACTACACACGCGACCACCAGTCTAATACA
Found at i:57343772 original size:14 final size:16
Alignment explanation
Indices: 57343740--57343778 Score: 55
Period size: 14 Copynumber: 2.6 Consensus size: 16
57343730 ATTTACATAA
*
57343740 CATATATCACATATTT
1 CATATATCACATATGT
57343756 CATATATCAC-T-TGT
1 CATATATCACATATGT
57343770 CATATATCA
1 CATATATCA
57343779 TCATTTTCTT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 11 0.50
15 1 0.05
16 10 0.45
ACGTcount: A:0.36, C:0.21, G:0.03, T:0.41
Consensus pattern (16 bp):
CATATATCACATATGT
Found at i:57344810 original size:13 final size:13
Alignment explanation
Indices: 57344792--57344818 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
57344782 ACTTCAAATT
57344792 AAGCACTTTATGC
1 AAGCACTTTATGC
57344805 AAGCACTTTATGC
1 AAGCACTTTATGC
57344818 A
1 A
57344819 TAGAATTTCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.33, C:0.22, G:0.15, T:0.30
Consensus pattern (13 bp):
AAGCACTTTATGC
Found at i:57345629 original size:15 final size:15
Alignment explanation
Indices: 57345573--57345637 Score: 73
Period size: 15 Copynumber: 4.4 Consensus size: 15
57345563 TAAAGATAAT
*
57345573 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
57345587 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
*
57345602 GAA-AAACCCAGAATA
1 -AAGAAATCCAGAATA
57345617 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
57345632 AAGAAA
1 AAGAAA
57345638 CCCAAGATAC
Statistics
Matches: 43, Mismatches: 3, Indels: 9
0.78 0.05 0.16
Matches are distributed among these distances:
14 11 0.26
15 29 0.67
16 3 0.07
ACGTcount: A:0.63, C:0.14, G:0.14, T:0.09
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:57345639 original size:30 final size:31
Alignment explanation
Indices: 57345573--57345641 Score: 92
Period size: 30 Copynumber: 2.3 Consensus size: 31
57345563 TAAAGATAAT
*
57345573 AAGAAAACC-GAATAAAGAAATCCAAGATAG
1 AAGAAACCCAGAATAAAGAAATCCAAGATAG
57345603 AA-AAACCCAGAATAAAGAAATCC-AGAATA-
1 AAGAAACCCAGAATAAAGAAATCCAAG-ATAG
57345632 AAGAAACCCA
1 AAGAAACCCA
57345642 AGATACGATA
Statistics
Matches: 35, Mismatches: 1, Indels: 6
0.83 0.02 0.14
Matches are distributed among these distances:
29 9 0.26
30 26 0.74
ACGTcount: A:0.61, C:0.17, G:0.13, T:0.09
Consensus pattern (31 bp):
AAGAAACCCAGAATAAAGAAATCCAAGATAG
Found at i:57348775 original size:50 final size:49
Alignment explanation
Indices: 57348657--57348782 Score: 164
Period size: 50 Copynumber: 2.6 Consensus size: 49
57348647 CAGGTACGCA
** **
57348657 TAGTAGCCTGCACTTAGTACTACACATGCGACCAACAGTCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACACGACCAACAGTCTAATACACG
* *
57348706 TAGTAGCCTGCACTTAGTACTACACACATGACCTCACCA-TCTAATACACG
1 TAGTAGCCTGCACTTAGTACTACACACACGA-C-CAACAGTCTAATACACG
*
57348756 TAGTAGCCTACACTTAGTACTACACAC
1 TAGTAGCCTGCACTTAGTACTACACAC
57348783 GTGATCACAG
Statistics
Matches: 68, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
49 28 0.41
50 36 0.53
51 4 0.06
ACGTcount: A:0.31, C:0.30, G:0.15, T:0.24
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACACGACCAACAGTCTAATACACG
Found at i:57349160 original size:14 final size:16
Alignment explanation
Indices: 57349128--57349166 Score: 55
Period size: 14 Copynumber: 2.6 Consensus size: 16
57349118 ATTTACATAA
*
57349128 CATATATCACATATTT
1 CATATATCACATATGT
57349144 CATATATCAC-T-TGT
1 CATATATCACATATGT
57349158 CATATATCA
1 CATATATCA
57349167 TCATTTTCTT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 11 0.50
15 1 0.05
16 10 0.45
ACGTcount: A:0.36, C:0.21, G:0.03, T:0.41
Consensus pattern (16 bp):
CATATATCACATATGT
Found at i:57350765 original size:41 final size:40
Alignment explanation
Indices: 57350720--57350796 Score: 109
Period size: 41 Copynumber: 1.9 Consensus size: 40
57350710 TGTGTGAAAC
* * *
57350720 GTGTAAGACCATGTCTGGGACATTGGCATCGTATATGATTT
1 GTGTAAGACCATATCTGGGACAATGGAATCG-ATATGATTT
*
57350761 GTGTAAGACCCTATCTGGGACAATGGAATCGATATG
1 GTGTAAGACCATATCTGGGACAATGGAATCGATATG
57350797 TGATAGCATG
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
40 5 0.16
41 27 0.84
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.30
Consensus pattern (40 bp):
GTGTAAGACCATATCTGGGACAATGGAATCGATATGATTT
Found at i:57352456 original size:14 final size:15
Alignment explanation
Indices: 57352419--57352456 Score: 51
Period size: 16 Copynumber: 2.5 Consensus size: 15
57352409 ATAAATATTC
*
57352419 GAATGGTATGAATAT
1 GAATAGTATGAATAT
57352434 GATATAGTATGAATAT
1 GA-ATAGTATGAATAT
57352450 G-ATAGTA
1 GAATAGTA
57352457 AATAGGTTTG
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
14 6 0.29
15 2 0.10
16 13 0.62
ACGTcount: A:0.42, C:0.00, G:0.24, T:0.34
Consensus pattern (15 bp):
GAATAGTATGAATAT
Found at i:57352979 original size:32 final size:32
Alignment explanation
Indices: 57352917--57352980 Score: 92
Period size: 32 Copynumber: 2.0 Consensus size: 32
57352907 CACAAAGAAA
* ***
57352917 GAAGAAAATAAATGAACACTCTAGTTGTGTTT
1 GAAGAAAATAAATGAACACTCCACCCGTGTTT
57352949 GAAGAAAATAAATGAACACTCCACCCGTGTTT
1 GAAGAAAATAAATGAACACTCCACCCGTGTTT
57352981 CACTACGATT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
32 28 1.00
ACGTcount: A:0.41, C:0.16, G:0.17, T:0.27
Consensus pattern (32 bp):
GAAGAAAATAAATGAACACTCCACCCGTGTTT
Found at i:57355916 original size:16 final size:16
Alignment explanation
Indices: 57355895--57355926 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
57355885 TTGGTAAATC
57355895 CTGAAATACCGAAAAG
1 CTGAAATACCGAAAAG
57355911 CTGAAATACCGAAAAG
1 CTGAAATACCGAAAAG
57355927 TCAAAATTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.19, G:0.19, T:0.12
Consensus pattern (16 bp):
CTGAAATACCGAAAAG
Found at i:57356196 original size:29 final size:29
Alignment explanation
Indices: 57356152--57356229 Score: 122
Period size: 29 Copynumber: 2.7 Consensus size: 29
57356142 ACTATGTATT
57356152 TGATTTGGGCCTAATGGGCCATACGAATG
1 TGATTTGGGCCTAATGGGCCATACGAATG
* *
57356181 TGATTTGGGCCCAATGGGCCATATGAATG
1 TGATTTGGGCCTAATGGGCCATACGAATG
*
57356210 AGA-TTGGGCCTAATGGGCCA
1 TGATTTGGGCCTAATGGGCCA
57356230 ATGGGCCATA
Statistics
Matches: 45, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
28 16 0.36
29 29 0.64
ACGTcount: A:0.24, C:0.18, G:0.32, T:0.26
Consensus pattern (29 bp):
TGATTTGGGCCTAATGGGCCATACGAATG
Found at i:57374188 original size:27 final size:27
Alignment explanation
Indices: 57374141--57374293 Score: 162
Period size: 27 Copynumber: 5.7 Consensus size: 27
57374131 CTAGTTGATC
* *
57374141 AAAATGACTATTTTGCTCTTATATGGT
1 AAAATGACTGTTTTGCCCTTATATGGT
* * *
57374168 AACATGACTGTTTGGCCCTTATTTGGT
1 AAAATGACTGTTTTGCCCTTATATGGT
* * * *
57374195 AAAATGATTGTTTTACCTTTATATGAT
1 AAAATGACTGTTTTGCCCTTATATGGT
57374222 AAAATGACTGTTTTGCCCTTATATGGT
1 AAAATGACTGTTTTGCCCTTATATGGT
*** * *
57374249 AAAATGACTGAAATGCCCCTACATGGT
1 AAAATGACTGTTTTGCCCTTATATGGT
* *
57374276 AAATTGACTATTTTGCCC
1 AAAATGACTGTTTTGCCC
57374294 CTATGTGATA
Statistics
Matches: 100, Mismatches: 26, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
27 100 1.00
ACGTcount: A:0.29, C:0.16, G:0.16, T:0.39
Consensus pattern (27 bp):
AAAATGACTGTTTTGCCCTTATATGGT
Found at i:57374303 original size:81 final size:81
Alignment explanation
Indices: 57374128--57374303 Score: 176
Period size: 81 Copynumber: 2.2 Consensus size: 81
57374118 TTACCTAAAC
* * ** * **
57374128 CCCCTA-GTTGATCAAAATGACTATTTTGCTCTTATATGGTAACATGACTGTTTGGCCCTTATTT
1 CCCCTATG-TGAT-AAAATGACTATTTTGCCCTTATATGGTAAAATGACTGAATGGCCCCTACAT
* *
57374192 GGTAAAATGATTGTTTTA
64 GGTAAAATGACTATTTTA
** * *
57374210 CCTTTATATGATAAAATGACTGTTTTGCCCTTATATGGTAAAATGACTGAAAT-GCCCCTACATG
1 CCCCTATGTGATAAAATGACTATTTTGCCCTTATATGGTAAAATGACTG-AATGGCCCCTACATG
* *
57374274 GTAAATTGACTATTTTG
65 GTAAAATGACTATTTTA
57374291 CCCCTATGTGATA
1 CCCCTATGTGATA
57374304 TATGTTTATA
Statistics
Matches: 74, Mismatches: 18, Indels: 5
0.76 0.19 0.05
Matches are distributed among these distances:
81 65 0.88
82 9 0.12
ACGTcount: A:0.28, C:0.17, G:0.16, T:0.39
Consensus pattern (81 bp):
CCCCTATGTGATAAAATGACTATTTTGCCCTTATATGGTAAAATGACTGAATGGCCCCTACATGG
TAAAATGACTATTTTA
Found at i:57377078 original size:18 final size:18
Alignment explanation
Indices: 57377055--57377101 Score: 67
Period size: 18 Copynumber: 2.6 Consensus size: 18
57377045 ATTACAGTAG
*
57377055 CAGTAAATAGTGCAATAA
1 CAGTAAACAGTGCAATAA
**
57377073 CAGTAAACAGTGCGGTAA
1 CAGTAAACAGTGCAATAA
57377091 CAGTAAACAGT
1 CAGTAAACAGT
57377102 ATGCAAGTCC
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.45, C:0.15, G:0.21, T:0.19
Consensus pattern (18 bp):
CAGTAAACAGTGCAATAA
Found at i:57380369 original size:46 final size:46
Alignment explanation
Indices: 57380319--57380494 Score: 200
Period size: 46 Copynumber: 3.8 Consensus size: 46
57380309 TGTTTGGGCA
*
57380319 TCCGAACTCGTTGAGTTAAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
57380365 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
57380410 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
57380458 -CCTGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
57380495 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 10, Indels: 20
0.79 0.07 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 5 0.05
46 60 0.55
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:57380474 original size:93 final size:93
Alignment explanation
Indices: 57380315--57380487 Score: 303
Period size: 93 Copynumber: 1.9 Consensus size: 93
57380305 AGGATGTTTG
*
57380315 GGCATCCGAACTCGTTGAGTTAAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTAAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAG
57380380 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
* *
57380408 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CCTGAGCTCGTTGA
1 GGCATCCGAACTCGTTGAGTTAAGTCCGAGTTCACTTATGGATGCGAACGTCC-GAACTCGTTGA
57380472 GTTGAGTCCGAGTTCG
65 GTTGAGTCCGAGTTCG
57380488 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
92 2 0.03
93 74 0.97
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTAAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:57384216 original size:42 final size:43
Alignment explanation
Indices: 57384115--57384264 Score: 137
Period size: 42 Copynumber: 3.5 Consensus size: 43
57384105 CTGAGATATT
* * * * *
57384115 GTGTAAGACCGTGTCTGGGACACAGGCCTCGAT-TTGAGATTTAT
1 GTGTAAGACCCTGTCTGGGACAAAGGCATCGATACTGA-A-TTAC
* * * *
57384159 GTGTAAGACCATGTCTGGGACATAGGCGTC-ATATCTGACTT-C
1 GTGTAAGACCCTGTCTGGGACAAAGGCATCGATA-CTGAATTAC
*
57384201 GTGTAAGACCCTGTCTAGGACAAAGGCATCGATACTGAATTAC
1 GTGTAAGACCCTGTCTGGGACAAAGGCATCGATACTGAATTAC
*
57384244 ATGTAAGACCAC-GTCTGGGAC
1 GTGTAAGACC-CTGTCTGGGAC
57384265 GTCGACATTA
Statistics
Matches: 88, Mismatches: 13, Indels: 11
0.79 0.12 0.10
Matches are distributed among these distances:
42 32 0.36
43 25 0.28
44 28 0.32
45 3 0.03
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.26
Consensus pattern (43 bp):
GTGTAAGACCCTGTCTGGGACAAAGGCATCGATACTGAATTAC
Found at i:57390586 original size:27 final size:27
Alignment explanation
Indices: 57390555--57390732 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
57390545 TAAATTGTAC
57390555 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
57390582 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
57390608 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
57390636 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
57390664 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
57390691 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
57390718 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
57390733 GGCTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:57390669 original size:82 final size:81
Alignment explanation
Indices: 57390556--57390711 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
57390546 AAATTGTACA
* *
57390556 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
57390620 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
57390637 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
57390702 TGCGAGTTGA
65 TGCGAATTGA
57390712 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:57390723 original size:82 final size:81
Alignment explanation
Indices: 57390552--57390732 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
57390542 GATTAAATTG
* *
57390552 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
57390617 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
57390633 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
57390697 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
57390715 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
57390733 GGCTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:57390743 original size:27 final size:27
Alignment explanation
Indices: 57390637--57390743 Score: 70
Period size: 27 Copynumber: 3.9 Consensus size: 27
57390627 TGACCATGCG
* * * *
57390637 GCACTAAGTGTGCGAGTTTGACTATGTA
1 GCACTAAGTGTGCGAG-CTCAATATATA
** * * **
57390665 GCACTAAGTGTGCGATTTGATTACGTA
1 GCACTAAGTGTGCGAGCTCAATATATA
* * *
57390692 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGAGCTCAATATATA
* *
57390719 GCACTGAGTGTGCGGGCTCAATATA
1 GCACTAAGTGTGCGAGCTCAATATA
57390744 CATTCGTGAA
Statistics
Matches: 68, Mismatches: 11, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
27 53 0.78
28 15 0.22
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.31
Consensus pattern (27 bp):
GCACTAAGTGTGCGAGCTCAATATATA
Found at i:57408122 original size:40 final size:40
Alignment explanation
Indices: 57408045--57408265 Score: 259
Period size: 40 Copynumber: 5.5 Consensus size: 40
57408035 ACCCAAGTAT
* *
57408045 CTTCGGGAT-TTAG-CCGGATATA-ACAACTCGCACAAATGC
1 CTTCGGG-TCTTAGCCCGGATATAGTC-ACTAGCACAAATGC
** *
57408084 CTTCGGGTCTTAGCTTGGATATAGTCACTAGCATAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
* * *
57408124 CTTCGAGACTTAGCCCGGATATAGTCGCTAGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
** *
57408164 CTTCGGGTCTTAGCCCGGATATAGAAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
* * *
57408204 CTTCGGATCTTAGTCCGGATATAGTCACTAGCATAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
57408244 CTTTGGGACTTAGCCCGGATAT
1 CTTCGGGTCTTAGCCCGGATAT
57408266 CATTCGAATA
Statistics
Matches: 152, Mismatches: 27, Indels: 5
0.83 0.15 0.03
Matches are distributed among these distances:
38 1 0.01
39 11 0.07
40 139 0.91
41 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.27
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:57436602 original size:13 final size:13
Alignment explanation
Indices: 57436584--57436610 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
57436574 GCTCGGCAGG
57436584 GACACGCCTGTGT
1 GACACGCCTGTGT
57436597 GACACGCCTGTGT
1 GACACGCCTGTGT
57436610 G
1 G
57436611 CGATTACTTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.30, G:0.33, T:0.22
Consensus pattern (13 bp):
GACACGCCTGTGT
Found at i:57468261 original size:20 final size:18
Alignment explanation
Indices: 57468233--57468287 Score: 58
Period size: 20 Copynumber: 2.9 Consensus size: 18
57468223 GTCAAATTTT
57468233 AATATATATTATAGATATA
1 AATATATATTATAGATA-A
*
57468252 GATCATATATATATA-ATAA
1 AAT-ATATAT-TATAGATAA
57468271 AATATATATTAGTAGAT
1 AATATATATTA-TAGAT
57468288 TGTTTAAGTG
Statistics
Matches: 30, Mismatches: 2, Indels: 8
0.75 0.05 0.20
Matches are distributed among these distances:
17 2 0.07
18 8 0.27
19 7 0.23
20 9 0.30
21 4 0.13
ACGTcount: A:0.51, C:0.02, G:0.07, T:0.40
Consensus pattern (18 bp):
AATATATATTATAGATAA
Found at i:57468700 original size:52 final size:52
Alignment explanation
Indices: 57468637--57468742 Score: 203
Period size: 52 Copynumber: 2.0 Consensus size: 52
57468627 GATGCACCGT
*
57468637 TCCCATTAGTGTATAAGTCTTATGTGCTAACTATAAATAATAACATGATATA
1 TCCCATTAGTGTATAAGTCTTATGTACTAACTATAAATAATAACATGATATA
57468689 TCCCATTAGTGTATAAGTCTTATGTACTAACTATAAATAATAACATGATATA
1 TCCCATTAGTGTATAAGTCTTATGTACTAACTATAAATAATAACATGATATA
57468741 TC
1 TC
57468743 ATCATTAAAT
Statistics
Matches: 53, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
52 53 1.00
ACGTcount: A:0.39, C:0.14, G:0.10, T:0.37
Consensus pattern (52 bp):
TCCCATTAGTGTATAAGTCTTATGTACTAACTATAAATAATAACATGATATA
Found at i:57474498 original size:26 final size:26
Alignment explanation
Indices: 57474469--57474519 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
57474459 GTGTCGAAAC
*
57474469 ATATTTCTCTTTTCTTTCTTCCCTTT
1 ATATTTCTCTTTTCATTCTTCCCTTT
*
57474495 ATATTTCTCTTTTCATTCTTTCCTT
1 ATATTTCTCTTTTCATTCTTCCCTT
57474520 CTAAATCTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.10, C:0.25, G:0.00, T:0.65
Consensus pattern (26 bp):
ATATTTCTCTTTTCATTCTTCCCTTT
Found at i:57477286 original size:23 final size:23
Alignment explanation
Indices: 57477260--57477318 Score: 100
Period size: 23 Copynumber: 2.6 Consensus size: 23
57477250 TAAACACCAC
*
57477260 ATGGTGTGTAGGGATGGTCAGAT
1 ATGGTGTGTAGGGATGGTCAGAG
*
57477283 ATGGTGTGTAGGGATGGTCGGAG
1 ATGGTGTGTAGGGATGGTCAGAG
57477306 ATGGTGTGTAGGG
1 ATGGTGTGTAGGG
57477319 GCTAGGGGTA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
23 34 1.00
ACGTcount: A:0.19, C:0.03, G:0.49, T:0.29
Consensus pattern (23 bp):
ATGGTGTGTAGGGATGGTCAGAG
Found at i:57477408 original size:35 final size:35
Alignment explanation
Indices: 57477357--57477426 Score: 97
Period size: 35 Copynumber: 2.0 Consensus size: 35
57477347 CTGACTCCAT
**
57477357 ATCTGTATCTGTATCTG-AGATGGGCTAAGGCCCAA
1 ATCTGTATCTAAATCTGTA-ATGGGCTAAGGCCCAA
*
57477392 ATCTGTATCTAAATCTGTAATGGGCTTAGGCCCAA
1 ATCTGTATCTAAATCTGTAATGGGCTAAGGCCCAA
57477427 GACTATTTTT
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
35 30 0.97
36 1 0.03
ACGTcount: A:0.27, C:0.20, G:0.23, T:0.30
Consensus pattern (35 bp):
ATCTGTATCTAAATCTGTAATGGGCTAAGGCCCAA
Found at i:57480745 original size:46 final size:46
Alignment explanation
Indices: 57480695--57480862 Score: 191
Period size: 46 Copynumber: 3.6 Consensus size: 46
57480685 TGGTTGAGCA
57480695 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
57480741 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
57480786 CATTCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
57480834 CCCGAGCTCGTTGAGTTGAGTCCAAGTTC
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC
57480863 GCTGATGGGC
Statistics
Matches: 101, Mismatches: 12, Indels: 18
0.77 0.09 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 54 0.53
47 28 0.28
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:57480856 original size:93 final size:93
Alignment explanation
Indices: 57480692--57480863 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
57480682 GGATGGTTGA
* *
57480692 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
*
57480757 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCAAGTTCGTGAGATGTAACTAG
* *
57480785 GCATTCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
57480850 TGAGTCCAAGTTCG
66 TGAGTCCAAGTTCG
57480864 CTGATGGGCA
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCAAGTTCGTGAGATGTAACTAG
Found at i:57508436 original size:403 final size:403
Alignment explanation
Indices: 57507689--57508498 Score: 1449
Period size: 403 Copynumber: 2.0 Consensus size: 403
57507679 CGCATATATT
*
57507689 GCTTTTATTCCTTTATAGCCAAATTTACTACCTAACACCACATGCACAACCAAGTTTCCTTTAGT
1 GCTTTTATTCCTTTATAGCAAAATTTACTACCTAACACCACATGCACAACCAAGTTTCCTTTAGT
57507754 AATTTACTTATAATCAATCTCACTTAACATTCAAGCCAAGAACACATAAGACCAAACCTAATCAT
66 AATTTACTTATAATCAATCTCACTTAACATTCAAGCCAAGAACACATAAGACCAAACCTAATCAT
**
57507819 GTTAAGCAAACCATTTCAAAGCATTTAGGCTATAACGAATATTATACCTTCACGACATATGACTA
131 GTTAAGCAAACCATTTCAAAGCATTTAGGCTATAACGAATATTATAAATTCACGACATATGACTA
*
57507884 TAAAACTAAAATAAACTTAACTCATACTCACCATGACCAAATATAAAAATAAAAGATTAGCCATT
196 TAAAACTAAAATAAACTTAACTCATACTCACCATGACCAAATACAAAAATAAAAGATTAGCCATT
*
57507949 TTCGTATGGCTTATATACATAACCAACATTCAACATTTCAAAGGTAAATTCCAGCCTATACATGC
261 TTCGTATGGCTTATACACATAACCAACATTCAACATTTCAAAGGTAAATTCCAGCCTATACATGC
*
57508014 CATAATTTAAGTTTAGCTAAAAAGGTACCAAAACAGTAGATAGTGTGATGAGCTTGGCTGACAGT
326 CATAATTTAAGTTTAGCTAAAAAGGTACCAAAACAGTAAATAGTGTGATGAGCTTGGCTGACAGT
57508079 TCCCGAGCTTGTA
391 TCCCGAGCTTGTA
57508092 GCTTTTATTCCTTTATAGCAAAATTTACTACCTAACACCACATGCACAACCAAGTTTCCTTTAGT
1 GCTTTTATTCCTTTATAGCAAAATTTACTACCTAACACCACATGCACAACCAAGTTTCCTTTAGT
*
57508157 AATTTACTTATAATCAATCTCACTTAACATTCAAGCTAAGAACACATAAGACCAAACCTAATCAT
66 AATTTACTTATAATCAATCTCACTTAACATTCAAGCCAAGAACACATAAGACCAAACCTAATCAT
* * * * *
57508222 GTTAAGCAAACCATTTCAAAGCATTTAGGCTGTCACGAATATTATAAATTTATGGCATATGACTA
131 GTTAAGCAAACCATTTCAAAGCATTTAGGCTATAACGAATATTATAAATTCACGACATATGACTA
* **
57508287 TAAAACTAAAATAAACTTAACTCATACTTACCATGACTGAATACAAAAATAAAAGATTAGCCATT
196 TAAAACTAAAATAAACTTAACTCATACTCACCATGACCAAATACAAAAATAAAAGATTAGCCATT
* * * *
57508352 TTCGTATGGCTTATACACATAACCAATATTTAGCATTTCAAAGGTAAATTCTAGCCTATACATGC
261 TTCGTATGGCTTATACACATAACCAACATTCAACATTTCAAAGGTAAATTCCAGCCTATACATGC
57508417 CATAATTTAAGTTTAGCTAAAAAGGTACCAAAACAGTAAATAGTGTGATGAGCTTGGCTGACAGT
326 CATAATTTAAGTTTAGCTAAAAAGGTACCAAAACAGTAAATAGTGTGATGAGCTTGGCTGACAGT
57508482 TCCCGAGCTTGTA
391 TCCCGAGCTTGTA
57508495 GCTT
1 GCTT
57508499 GACTTTAAAA
Statistics
Matches: 388, Mismatches: 19, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
403 388 1.00
ACGTcount: A:0.38, C:0.20, G:0.11, T:0.30
Consensus pattern (403 bp):
GCTTTTATTCCTTTATAGCAAAATTTACTACCTAACACCACATGCACAACCAAGTTTCCTTTAGT
AATTTACTTATAATCAATCTCACTTAACATTCAAGCCAAGAACACATAAGACCAAACCTAATCAT
GTTAAGCAAACCATTTCAAAGCATTTAGGCTATAACGAATATTATAAATTCACGACATATGACTA
TAAAACTAAAATAAACTTAACTCATACTCACCATGACCAAATACAAAAATAAAAGATTAGCCATT
TTCGTATGGCTTATACACATAACCAACATTCAACATTTCAAAGGTAAATTCCAGCCTATACATGC
CATAATTTAAGTTTAGCTAAAAAGGTACCAAAACAGTAAATAGTGTGATGAGCTTGGCTGACAGT
TCCCGAGCTTGTA
Found at i:57518317 original size:41 final size:41
Alignment explanation
Indices: 57518146--57518327 Score: 176
Period size: 41 Copynumber: 4.5 Consensus size: 41
57518136 GGGTTTAAAT
57518146 CCGAGCTTGGTTTCGAAGGGCCTTTGAGCCAGTGCTAATAA
1 CCGAGCTTGGTTTCGAAGGGCCTTTGAGCCAGTGCTAATAA
* * *
57518187 CCGAACTTAGTTTCGAAGGG-CTTTAGAGCCAGTG-TCATAA
1 CCGAGCTTGGTTTCGAAGGGCCTTT-GAGCCAGTGCTAATAA
* * **
57518227 CCG-GACTTAGTTCCGAAGGGCCTTCAAGCCAGTGGTCTAAT--
1 CCGAG-CTTGGTTTCGAAGGGCCTTTGAGCCAGT-G-CTAATAA
* * *
57518268 CCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGCTAAGAA
1 CCGAGCTTGGTTTCGAAGGGCCTTTGAGCCAGTGCTAATAA
* * *
57518309 TCGGGCTTGATTTCGAAGG
1 CCGAGCTTGGTTTCGAAGG
57518328 ATGTTTGTGC
Statistics
Matches: 113, Mismatches: 19, Indels: 18
0.75 0.13 0.12
Matches are distributed among these distances:
39 4 0.04
40 34 0.30
41 71 0.63
42 1 0.01
43 3 0.03
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.26
Consensus pattern (41 bp):
CCGAGCTTGGTTTCGAAGGGCCTTTGAGCCAGTGCTAATAA
Found at i:57520623 original size:27 final size:27
Alignment explanation
Indices: 57520583--57520681 Score: 128
Period size: 27 Copynumber: 3.6 Consensus size: 27
57520573 AGGAAGCGTC
*
57520583 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
*
57520610 CTGGTGGCTCTGCCACACATT-TCTGTT
1 CTGGTGGCTCTGCCACA-ATTATCTGAT
*
57520637 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCACAATTATCTG-AT
* *
57520665 CTGGTGACTCTGTCACA
1 CTGGTGGCTCTGCCACA
57520682 TTAACTATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
26 3 0.05
27 41 0.66
28 18 0.29
ACGTcount: A:0.16, C:0.26, G:0.23, T:0.34
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGAT
Found at i:57521762 original size:11 final size:10
Alignment explanation
Indices: 57521734--57521767 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
57521724 AGCCTGTAAG
57521734 TATTCTGAAT
1 TATTCTGAAT
*
57521744 TTTTCTGAAT
1 TATTCTGAAT
57521754 ATATTCTGAAT
1 -TATTCTGAAT
57521765 TAT
1 TAT
57521768 CTGTTTGTAC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
10 12 0.57
11 9 0.43
ACGTcount: A:0.29, C:0.09, G:0.09, T:0.53
Consensus pattern (10 bp):
TATTCTGAAT
Found at i:57528514 original size:27 final size:26
Alignment explanation
Indices: 57528431--57528524 Score: 111
Period size: 26 Copynumber: 3.5 Consensus size: 26
57528421 CTATGCCATA
*
57528431 ATTATCTGATCTGGTGGCTCTG-CAC
1 ATTATCTGTTCTGGTGGCTCTGTCAC
*
57528456 ATATTTCTGTTCTGGTGGCTCT-TCCAC
1 AT-TATCTGTTCTGGTGGCTCTGT-CAC
*
57528483 GATTATCTGTATCTGGTGACTCTGTCAC
1 -ATTATCTGT-TCTGGTGGCTCTGTCAC
57528511 ATTATCTGTTCTGG
1 ATTATCTGTTCTGG
57528525 CAGCCATGCT
Statistics
Matches: 59, Mismatches: 4, Indels: 11
0.80 0.05 0.15
Matches are distributed among these distances:
25 2 0.03
26 22 0.37
27 18 0.31
28 16 0.27
29 1 0.02
ACGTcount: A:0.15, C:0.22, G:0.21, T:0.41
Consensus pattern (26 bp):
ATTATCTGTTCTGGTGGCTCTGTCAC
Found at i:57540444 original size:30 final size:30
Alignment explanation
Indices: 57540410--57540470 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
57540400 TTCCCGAGCC
57540410 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
1 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
* * * *
57540440 TAGGGGCAAAATTGTAATTTTTCAAAAGTT
1 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
57540470 T
1 T
57540471 GAGTTAAGGA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.39, C:0.07, G:0.23, T:0.31
Consensus pattern (30 bp):
TAGGGGCAAAAGTGTAAATATGCAAAAGTT
Found at i:57545711 original size:27 final size:27
Alignment explanation
Indices: 57545680--57545857 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
57545670 TAAATTGTAC
57545680 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
57545707 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
57545733 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
57545761 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
57545789 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
57545816 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
57545843 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
57545858 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:57545794 original size:82 final size:81
Alignment explanation
Indices: 57545681--57545836 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
57545671 AAATTGTACA
* *
57545681 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
57545745 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
57545762 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
57545827 TGCGAGTTGA
65 TGCGAATTGA
57545837 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:57545848 original size:82 final size:81
Alignment explanation
Indices: 57545677--57545857 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
57545667 GATTAAATTG
* *
57545677 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
57545742 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
57545758 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
57545822 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
57545840 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
57545858 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:57550248 original size:43 final size:42
Alignment explanation
Indices: 57550181--57550335 Score: 161
Period size: 43 Copynumber: 3.6 Consensus size: 42
57550171 CTCATACAAT
* *
57550181 GCCAACGTCCCAGACGTGGTCTTACAAGTAATCAAATATAGAT
1 GCCAACGTCCCAGACGTGGTCTTACACGTAATCAAATA-AGAA
* * * *
57550224 G-CAATTGTCCCAGACATGGTCTTACACGAAATCAAATACGAA
1 GCCAA-CGTCCCAGACGTGGTCTTACACGTAATCAAATAAGAA
* * *
57550266 GCCAACGTCCCAGACGTGGTCTTACACGTAAAAACCAAAT-TGAT
1 GCCAACGTCCCAGACGTGGTCTTACACGT---AATCAAATAAGAA
*
57550310 GCCAACGTCCCATACGTGGTCTTACA
1 GCCAACGTCCCAGACGTGGTCTTACA
57550336 TGATTTCACA
Statistics
Matches: 94, Mismatches: 13, Indels: 9
0.81 0.11 0.08
Matches are distributed among these distances:
42 27 0.29
43 33 0.35
44 27 0.29
45 7 0.07
ACGTcount: A:0.34, C:0.26, G:0.18, T:0.22
Consensus pattern (42 bp):
GCCAACGTCCCAGACGTGGTCTTACACGTAATCAAATAAGAA
Found at i:57553676 original size:25 final size:25
Alignment explanation
Indices: 57553648--57553695 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
57553638 TTATAATGTA
* *
57553648 AAAATGACCATTTTGCCCCTAGGTG
1 AAAATGACCATTATACCCCTAGGTG
57553673 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
57553696 GATGTGTTAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTG
Found at i:57553752 original size:10 final size:10
Alignment explanation
Indices: 57553739--57553773 Score: 52
Period size: 10 Copynumber: 3.4 Consensus size: 10
57553729 TTTATACAAT
57553739 ATATGCCATG
1 ATATGCCATG
*
57553749 ATATGCACATC
1 ATATGC-CATG
57553760 ATATGCCATG
1 ATATGCCATG
57553770 ATAT
1 ATAT
57553774 ATTCATATAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
10 13 0.59
11 9 0.41
ACGTcount: A:0.34, C:0.20, G:0.14, T:0.31
Consensus pattern (10 bp):
ATATGCCATG
Found at i:57553875 original size:24 final size:25
Alignment explanation
Indices: 57553818--57553875 Score: 68
Period size: 24 Copynumber: 2.4 Consensus size: 25
57553808 GAAGGAAGTG
57553818 CAAAA-AGGCTTTGCCCCAGTTTAT
1 CAAAAGAGGCTTTGCCCCAGTTTAT
* *
57553842 CGAAAG-GGCTTTGCCCTAG-TTAT
1 CAAAAGAGGCTTTGCCCCAGTTTAT
*
57553865 TAAAAGAGGCT
1 CAAAAGAGGCT
57553876 AGGCCTCCAG
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
23 8 0.29
24 20 0.71
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.28
Consensus pattern (25 bp):
CAAAAGAGGCTTTGCCCCAGTTTAT
Found at i:57561404 original size:25 final size:25
Alignment explanation
Indices: 57561375--57561425 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 25
57561365 CCCTTATAAT
* *
57561375 GTGAAAATAACCATTTTGCCCCTAG
1 GTGAAAATAACCATTATACCCCTAG
*
57561400 GTGAAAATGACCATTATACCCCTAG
1 GTGAAAATAACCATTATACCCCTAG
57561425 G
1 G
57561426 GATGTGTTAT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.33, C:0.24, G:0.18, T:0.25
Consensus pattern (25 bp):
GTGAAAATAACCATTATACCCCTAG
Found at i:57561478 original size:10 final size:10
Alignment explanation
Indices: 57561465--57561503 Score: 69
Period size: 10 Copynumber: 3.8 Consensus size: 10
57561455 CTGTTTTATA
57561465 CATGATATGC
1 CATGATATGC
57561475 CATGATATGC
1 CATGATATGC
57561485 ACATGATATGC
1 -CATGATATGC
57561496 CATGATAT
1 CATGATAT
57561504 ATTCATATAT
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
10 18 0.64
11 10 0.36
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.31
Consensus pattern (10 bp):
CATGATATGC
Found at i:57561490 original size:21 final size:21
Alignment explanation
Indices: 57561464--57561503 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
57561454 ACTGTTTTAT
57561464 ACATGATATGCCATGATATGC
1 ACATGATATGCCATGATATGC
57561485 ACATGATATGCCATGATAT
1 ACATGATATGCCATGATAT
57561504 ATTCATATAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.35, C:0.17, G:0.17, T:0.30
Consensus pattern (21 bp):
ACATGATATGCCATGATATGC
Found at i:57561606 original size:24 final size:24
Alignment explanation
Indices: 57561548--57561630 Score: 114
Period size: 25 Copynumber: 3.4 Consensus size: 24
57561538 GGAGGAAGTA
*
57561548 CAAAAGGGCTTTGCCCCAGTTTAC
1 CAAAAGGGCTTTGCCCCAGTTTAT
57561572 CGAAAAGGGCTTTGCCCCAGTTTAT
1 C-AAAAGGGCTTTGCCCCAGTTTAT
*
57561597 CAAAAGGGCTTCGCCCCAG-TTAT
1 CAAAAGGGCTTTGCCCCAGTTTAT
*
57561620 GAAAAGAGGCT
1 CAAAAG-GGCT
57561631 AGGCCTCCAG
Statistics
Matches: 54, Mismatches: 3, Indels: 4
0.89 0.05 0.07
Matches are distributed among these distances:
23 9 0.17
24 22 0.41
25 23 0.43
ACGTcount: A:0.28, C:0.25, G:0.24, T:0.23
Consensus pattern (24 bp):
CAAAAGGGCTTTGCCCCAGTTTAT
Found at i:57561641 original size:49 final size:49
Alignment explanation
Indices: 57561548--57561642 Score: 122
Period size: 49 Copynumber: 1.9 Consensus size: 49
57561538 GGAGGAAGTA
* **
57561548 CAAAAGGGCTTTGCCCCAGTTTACCGAAAAGGGCTTTGCCCCAGTTTAT
1 CAAAAGGGCTTCGCCCCAGTTTACCGAAAAGGGCTAGGCCCCAGTTTAT
*
57561597 CAAAAGGGCTTCGCCCCAG-TTA-TGAAAAGAGGCTAGGCCTCCAGTT
1 CAAAAGGGCTTCGCCCCAGTTTACCGAAAAG-GGCTAGGCC-CCAGTT
57561643 ATATGATAAA
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
47 6 0.15
48 10 0.25
49 24 0.60
ACGTcount: A:0.26, C:0.26, G:0.24, T:0.23
Consensus pattern (49 bp):
CAAAAGGGCTTCGCCCCAGTTTACCGAAAAGGGCTAGGCCCCAGTTTAT
Found at i:57563154 original size:9 final size:9
Alignment explanation
Indices: 57563140--57563176 Score: 74
Period size: 9 Copynumber: 4.1 Consensus size: 9
57563130 AAAAGGGACT
57563140 AAATTGTAA
1 AAATTGTAA
57563149 AAATTGTAA
1 AAATTGTAA
57563158 AAATTGTAA
1 AAATTGTAA
57563167 AAATTGTAA
1 AAATTGTAA
57563176 A
1 A
57563177 TGTTAGGGGT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 28 1.00
ACGTcount: A:0.57, C:0.00, G:0.11, T:0.32
Consensus pattern (9 bp):
AAATTGTAA
Found at i:57565225 original size:39 final size:40
Alignment explanation
Indices: 57565117--57565301 Score: 209
Period size: 40 Copynumber: 4.7 Consensus size: 40
57565107 TCGAATGATG
* * *
57565117 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
* *
57565156 ATCCGGACTAAGAT-CTGAAGGCATTTGTGCGAGTTACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
57565197 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
*
57565236 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
57565275 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
57565302 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 15, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
39 35 0.28
40 79 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:57565323 original size:79 final size:79
Alignment explanation
Indices: 57565172--57565324 Score: 204
Period size: 79 Copynumber: 1.9 Consensus size: 79
57565162 ACTAAGATCT
* **
57565172 GAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAAT
1 GAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAAAT
57565237 CCGGGTTAAGTCCC
66 CCGGGTTAAGTCCC
* *
57565251 GAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTA
1 GAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-CTA
*
57565314 TATCC-GGTTAA
63 AATCCGGGTTAA
57565325 ATTTCGAAGG
Statistics
Matches: 65, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
78 2 0.03
79 39 0.60
80 24 0.37
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.26
Consensus pattern (79 bp):
GAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAAAT
CCGGGTTAAGTCCC
Found at i:57577873 original size:28 final size:28
Alignment explanation
Indices: 57577833--57577896 Score: 110
Period size: 28 Copynumber: 2.3 Consensus size: 28
57577823 TGGGAAGTAG
*
57577833 TTGGGCCTGATGGGCCATATGAATGTGA
1 TTGGGCCTGATGGGCCATATGAATGAGA
*
57577861 TTGGGCCTGATGGGCCATGTGAATGAGA
1 TTGGGCCTGATGGGCCATATGAATGAGA
57577889 TTGGGCCT
1 TTGGGCCT
57577897 AAAGGGGCCA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.19, C:0.16, G:0.38, T:0.28
Consensus pattern (28 bp):
TTGGGCCTGATGGGCCATATGAATGAGA
Found at i:57578554 original size:81 final size:81
Alignment explanation
Indices: 57578213--57578581 Score: 411
Period size: 81 Copynumber: 4.6 Consensus size: 81
57578203 TAATAAAGAG
* * * * * *
57578213 AAATTACTAAAATACCCCTAATTTGTAAAATTATCGAAATACCCCCGGTTTGTAAAATTACCGAA
1 AAATTACCAAAATACCCTTGATTTGTAAAATTACCGAAATACCCTCGATTTGTAAAATTACCGAA
* * *
57578278 ATACTCTCGATTTGTA
66 ACACCCTCAATTTGTA
*** * * *
57578294 AAATTACCAAAATACCCCCAATTTGTGAAATTACTGAAACACCCTCGATTTGTAAAATTACCGAA
1 AAATTACCAAAATACCCTTGATTTGTAAAATTACCGAAATACCCTCGATTTGTAAAATTACCGAA
57578359 ACACCCTCAATTTGTA
66 ACACCCTCAATTTGTA
* * * * * * *
57578375 AAATTATCGAAACA-CCTTCGATTTGTAAAATTACCAAAACACCTTCGATTTGTAAAATTACCAA
1 AAATTACCAAAATACCCTT-GATTTGTAAAATTACCGAAATACCCTCGATTTGTAAAATTACCGA
*
57578439 AATACCCTCAATTTGTA
65 AACACCCTCAATTTGTA
* * *
57578456 AAATTACCAAAATACCCTTGATTTGTAAAATTACCAAAATACCATTGATTTGTAAAATTACCGAA
1 AAATTACCAAAATACCCTTGATTTGTAAAATTACCGAAATACCCTCGATTTGTAAAATTACCGAA
* *
57578521 ACA-CCTCTGATTTATA
66 ACACCCTC-AATTTGTA
* * *
57578537 AAATTATCGAAATACCCTTG-TAGTGTAAAATTACCGAAATACCCT
1 AAATTACCAAAATACCCTTGAT-TTGTAAAATTACCGAAATACCCT
57578582 TGTAGGGTAA
Statistics
Matches: 246, Mismatches: 38, Indels: 8
0.84 0.13 0.03
Matches are distributed among these distances:
80 7 0.03
81 235 0.96
82 4 0.02
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.30
Consensus pattern (81 bp):
AAATTACCAAAATACCCTTGATTTGTAAAATTACCGAAATACCCTCGATTTGTAAAATTACCGAA
ACACCCTCAATTTGTA
Found at i:57578586 original size:27 final size:27
Alignment explanation
Indices: 57578213--57578583 Score: 365
Period size: 27 Copynumber: 13.7 Consensus size: 27
57578203 TAATAAAGAG
** * *
57578213 AAATTACTAAAATACCCCTAATTTGTA
1 AAATTACCGAAATACCCTTGATTTGTA
* ** *
57578240 AAATTATCGAAATACCCCCGGTTTGTA
1 AAATTACCGAAATACCCTTGATTTGTA
* *
57578267 AAATTACCGAAATACTCTCGATTTGTA
1 AAATTACCGAAATACCCTTGATTTGTA
* *** *
57578294 AAATTACCAAAATACCCCCAATTTGTG
1 AAATTACCGAAATACCCTTGATTTGTA
* * *
57578321 AAATTACTGAAACACCCTCGATTTGTA
1 AAATTACCGAAATACCCTTGATTTGTA
* **
57578348 AAATTACCGAAACACCCTCAATTTGTA
1 AAATTACCGAAATACCCTTGATTTGTA
* *
57578375 AAATTATCGAAACA-CCTTCGATTTGTA
1 AAATTACCGAAATACCCTT-GATTTGTA
57578402 AAATTACC-AAA-ACACCTTCGATTTGTA
1 AAATTACCGAAATAC-CCTT-GATTTGTA
* **
57578429 AAATTACCAAAATACCCTCAATTTGTA
1 AAATTACCGAAATACCCTTGATTTGTA
*
57578456 AAATTACCAAAATACCCTTGATTTGTA
1 AAATTACCGAAATACCCTTGATTTGTA
* *
57578483 AAATTACCAAAATACCATTGATTTGTA
1 AAATTACCGAAATACCCTTGATTTGTA
* *
57578510 AAATTACCGAAACA-CCTCTGATTTATA
1 AAATTACCGAAATACCCT-TGATTTGTA
* *
57578537 AAATTATCGAAATACCCTTG-TAGTGTA
1 AAATTACCGAAATACCCTTGAT-TTGTA
57578564 AAATTACCGAAATACCCTTG
1 AAATTACCGAAATACCCTTG
57578584 TAGGGTAAAA
Statistics
Matches: 295, Mismatches: 41, Indels: 16
0.84 0.12 0.05
Matches are distributed among these distances:
25 1 0.00
26 9 0.03
27 274 0.93
28 9 0.03
29 2 0.01
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.30
Consensus pattern (27 bp):
AAATTACCGAAATACCCTTGATTTGTA
Found at i:57578591 original size:27 final size:27
Alignment explanation
Indices: 57578425--57578621 Score: 152
Period size: 27 Copynumber: 7.3 Consensus size: 27
57578415 ACCTTCGATT
* ** *
57578425 TGTAAAATTACCAAAATACCC-TCAATT
1 TGTAAAATTACCGAAATACCCTTGTA-G
* *
57578452 TGTAAAATTACCAAAATACCCTTG-ATT
1 TGTAAAATTACCGAAATACCCTTGTA-G
* * *
57578479 TGTAAAATTACCAAAATACCATTG-ATT
1 TGTAAAATTACCGAAATACCCTTGTA-G
* *
57578506 TGTAAAATTACCGAAACA-CCTCTG-ATT
1 TGTAAAATTACCGAAATACCCT-TGTA-G
* *
57578533 TATAAAATTATCGAAATACCCTTGTAG
1 TGTAAAATTACCGAAATACCCTTGTAG
57578560 TGTAAAATTACCGAAATACCCTTGTAG
1 TGTAAAATTACCGAAATACCCTTGTAG
* * * *
57578587 GGTAAAATGACCGACATACCCCTGTAG
1 TGTAAAATTACCGAAATACCCTTGTAG
*
57578614 GGTAAAAT
1 TGTAAAAT
57578622 GACTGTTTTG
Statistics
Matches: 151, Mismatches: 15, Indels: 8
0.87 0.09 0.05
Matches are distributed among these distances:
26 2 0.01
27 144 0.95
28 5 0.03
ACGTcount: A:0.40, C:0.19, G:0.12, T:0.29
Consensus pattern (27 bp):
TGTAAAATTACCGAAATACCCTTGTAG
Found at i:57580654 original size:28 final size:27
Alignment explanation
Indices: 57580599--57580710 Score: 129
Period size: 27 Copynumber: 4.1 Consensus size: 27
57580589 AGCATGGCTG
* *
57580599 CCAGAACAGATAA-TGTGACAGAGTCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
*
57580625 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAATTGTGGCAGAGCCA
*
57580653 CCAGAACAGA-AATATGTGGCAGGGCCA
1 CCAGAACAGATAAT-TGTGGCAGAGCCA
* * *
57580680 CCAGATCAGATAATTGTGGTATAGCCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
57580707 CCAG
1 CCAG
57580711 GATGCTTCCT
Statistics
Matches: 73, Mismatches: 9, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
26 8 0.11
27 47 0.64
28 18 0.25
ACGTcount: A:0.37, C:0.22, G:0.25, T:0.16
Consensus pattern (27 bp):
CCAGAACAGATAATTGTGGCAGAGCCA
Found at i:57580690 original size:54 final size:54
Alignment explanation
Indices: 57580599--57580710 Score: 145
Period size: 54 Copynumber: 2.1 Consensus size: 54
57580589 AGCATGGCTG
* *
57580599 CCAGAACAGATAATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGAAAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
* * * * *
57580653 CCAGAACAGAAATATGTGGCAGGGCCACCAGAT-CAGATAATTGTGGTATAGCCA
1 CCAGAACAGAAA-ATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
57580707 CCAG
1 CCAG
57580711 GATGCTTCCT
Statistics
Matches: 50, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
54 33 0.66
55 17 0.34
ACGTcount: A:0.37, C:0.22, G:0.25, T:0.16
Consensus pattern (54 bp):
CCAGAACAGAAAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
Found at i:57581128 original size:16 final size:15
Alignment explanation
Indices: 57581107--57581136 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
57581097 AAAATACCAA
57581107 CTTTTCGGCATTTTGG
1 CTTTTCGGC-TTTTGG
57581123 CTTTTCGGCTTTTG
1 CTTTTCGGCTTTTG
57581137 CTGATCTAGT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.03, C:0.20, G:0.23, T:0.53
Consensus pattern (15 bp):
CTTTTCGGCTTTTGG
Found at i:57587710 original size:17 final size:18
Alignment explanation
Indices: 57587688--57587721 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
57587678 TTTTGGGCTA
57587688 TGTGGG-CCACACGGGCG
1 TGTGGGACCACACGGGCG
*
57587705 TGTGGGACCACATGGGC
1 TGTGGGACCACACGGGC
57587722 CCACAATATA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.15, C:0.26, G:0.44, T:0.15
Consensus pattern (18 bp):
TGTGGGACCACACGGGCG
Found at i:57587955 original size:80 final size:81
Alignment explanation
Indices: 57587827--57588019 Score: 257
Period size: 80 Copynumber: 2.4 Consensus size: 81
57587817 TGTACCTGGA
57587827 CCCTTA-ATCGGTAAAATGACTATTTTGCCCTTATAAAGTAAAATGACTGTTTTGCCCTTATGAG
1 CCCTTATAT-GGTAAAATGACTATTTTGCCCTTATAAAGTAAAATGACTGTTTTGCCCTTATGAG
* *
57587891 GTAAAATAATTGTTTTG
65 GTAAAATAACTATTTTG
* * * * *
57587908 CCCTTATGA-GGTAAAATGA-TTTTTTTCCCTTATGAGGTTAAATGACTGTTTTGCCCTTATGAG
1 CCCTTAT-ATGGTAAAATGACTATTTTGCCCTTATAAAGTAAAATGACTGTTTTGCCCTTATGAG
* *
57587971 GTAAAATGACTATTTTT
65 GTAAAATAACTATTTTG
*
57587988 CCCTTATATGGTAAAATGACTGTTTTGCCCTT
1 CCCTTATATGGTAAAATGACTATTTTGCCCTT
57588020 TTATGGTAAG
Statistics
Matches: 97, Mismatches: 11, Indels: 8
0.84 0.09 0.07
Matches are distributed among these distances:
79 1 0.01
80 69 0.71
81 26 0.27
83 1 0.01
ACGTcount: A:0.27, C:0.16, G:0.17, T:0.40
Consensus pattern (81 bp):
CCCTTATATGGTAAAATGACTATTTTGCCCTTATAAAGTAAAATGACTGTTTTGCCCTTATGAGG
TAAAATAACTATTTTG
Found at i:57588028 original size:27 final size:27
Alignment explanation
Indices: 57587836--57588019 Score: 255
Period size: 27 Copynumber: 6.9 Consensus size: 27
57587826 ACCCTTAATC
* *
57587836 GGTAAAATGACTATTTTGCCCTTATAA
1 GGTAAAATGACTGTTTTGCCCTTATGA
*
57587863 AGTAAAATGACTGTTTTGCCCTTATGA
1 GGTAAAATGACTGTTTTGCCCTTATGA
* *
57587890 GGTAAAATAATTGTTTTGCCCTTATGA
1 GGTAAAATGACTGTTTTGCCCTTATGA
* *
57587917 GGTAAAATGA-TTTTTTTCCCTTATGA
1 GGTAAAATGACTGTTTTGCCCTTATGA
*
57587943 GGTTAAATGACTGTTTTGCCCTTATGA
1 GGTAAAATGACTGTTTTGCCCTTATGA
* *
57587970 GGTAAAATGACTATTTTTCCCTTAT-A
1 GGTAAAATGACTGTTTTGCCCTTATGA
57587996 TGGTAAAATGACTGTTTTGCCCTT
1 -GGTAAAATGACTGTTTTGCCCTT
57588020 TTATGGTAAG
Statistics
Matches: 138, Mismatches: 17, Indels: 4
0.87 0.11 0.03
Matches are distributed among these distances:
26 24 0.17
27 114 0.83
ACGTcount: A:0.28, C:0.14, G:0.17, T:0.41
Consensus pattern (27 bp):
GGTAAAATGACTGTTTTGCCCTTATGA
Found at i:57594566 original size:17 final size:19
Alignment explanation
Indices: 57594530--57594571 Score: 61
Period size: 17 Copynumber: 2.3 Consensus size: 19
57594520 TATAAACATT
57594530 TTAAATTAAACAAAATAAA
1 TTAAATTAAACAAAATAAA
*
57594549 TTAAATTAGA-AAAA-AAA
1 TTAAATTAAACAAAATAAA
57594566 TTAAAT
1 TTAAAT
57594572 CTTAATTAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 9 0.41
18 4 0.18
19 9 0.41
ACGTcount: A:0.67, C:0.02, G:0.02, T:0.29
Consensus pattern (19 bp):
TTAAATTAAACAAAATAAA
Found at i:57598846 original size:34 final size:33
Alignment explanation
Indices: 57598762--57598848 Score: 138
Period size: 33 Copynumber: 2.6 Consensus size: 33
57598752 CTGTATTGAG
*
57598762 ATGGGCTAAGGCCCAGACTACCTATGTTACTGAA
1 ATGGGCT-AGGCCCAGACTGCCTATGTTACTGAA
*
57598796 ATGGGCTAGGCCCAGACTGCCTCTGTTACTGAA
1 ATGGGCTAGGCCCAGACTGCCTATGTTACTGAA
57598829 ATGGGCTCAGGCCCAGACTG
1 ATGGGCT-AGGCCCAGACTG
57598849 ATACTATTAC
Statistics
Matches: 50, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
33 31 0.62
34 19 0.38
ACGTcount: A:0.24, C:0.26, G:0.28, T:0.22
Consensus pattern (33 bp):
ATGGGCTAGGCCCAGACTGCCTATGTTACTGAA
Found at i:57598859 original size:34 final size:33
Alignment explanation
Indices: 57598749--57598863 Score: 121
Period size: 34 Copynumber: 3.5 Consensus size: 33
57598739 CTTTGTTTGC
* *
57598749 ATACTG-TATTGAGATGGGCTAAGGCCCAGACT-
1 ATACTGTTACTGAAATGGGCT-AGGCCCAGACTG
57598781 ACCTA-TGTTACTGAAATGGGCTAGGCCCAGACTG
1 A--TACTGTTACTGAAATGGGCTAGGCCCAGACTG
*
57598815 CCT-CTGTTACTGAAATGGGCTCAGGCCCAGACTG
1 -ATACTGTTACTGAAATGGGCT-AGGCCCAGACTG
*
57598849 ATACTATTACTGAAA
1 ATACTGTTACTGAAA
57598864 AATAGGATAA
Statistics
Matches: 70, Mismatches: 5, Indels: 14
0.79 0.06 0.16
Matches are distributed among these distances:
32 1 0.01
33 32 0.46
34 37 0.53
ACGTcount: A:0.28, C:0.23, G:0.24, T:0.25
Consensus pattern (33 bp):
ATACTGTTACTGAAATGGGCTAGGCCCAGACTG
Found at i:57605999 original size:28 final size:28
Alignment explanation
Indices: 57605959--57606056 Score: 89
Period size: 28 Copynumber: 3.5 Consensus size: 28
57605949 ATATATGAAC
57605959 TATGTGTGCGAGATTAGTAACCGAGCAA
1 TATGTGTGCGAGATTAGTAACCGAGCAA
*
57605987 TATGTGTGCGAGATCGGGT-GTAA--G-GCAC
1 TATGTGTGCGAGAT----TAGTAACCGAGCAA
* *
57606015 TATGTGTGCGAAATTATTAACCGAG-AA
1 TATGTGTGCGAGATTAGTAACCGAGCAA
57606042 CTATGTGTGCGAGAT
1 -TATGTGTGCGAGAT
57606057 CGGGTGTAAG
Statistics
Matches: 56, Mismatches: 5, Indels: 18
0.71 0.06 0.23
Matches are distributed among these distances:
24 1 0.02
25 3 0.05
27 2 0.04
28 44 0.79
29 1 0.02
31 4 0.07
32 1 0.02
ACGTcount: A:0.29, C:0.13, G:0.31, T:0.28
Consensus pattern (28 bp):
TATGTGTGCGAGATTAGTAACCGAGCAA
Found at i:57606047 original size:56 final size:56
Alignment explanation
Indices: 57605957--57606078 Score: 201
Period size: 56 Copynumber: 2.2 Consensus size: 56
57605947 GAATATATGA
*
57605957 ACTATGTGTGCGAGATTAGTAACCGAGCAATATGTGTGCGAGATCGGGTGTAAGGC
1 ACTATGTGTGCGAAATTAGTAACCGAGCAATATGTGTGCGAGATCGGGTGTAAGGC
*
57606013 ACTATGTGTGCGAAATTATTAACCGAG-AACTATGTGTGCGAGATCGGGTGTAAGGC
1 ACTATGTGTGCGAAATTAGTAACCGAGCAA-TATGTGTGCGAGATCGGGTGTAAGGC
*
57606069 ACTGTGTGTG
1 ACTATGTGTG
57606079 TGCAAAATTA
Statistics
Matches: 62, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
55 2 0.03
56 60 0.97
ACGTcount: A:0.26, C:0.14, G:0.33, T:0.27
Consensus pattern (56 bp):
ACTATGTGTGCGAAATTAGTAACCGAGCAATATGTGTGCGAGATCGGGTGTAAGGC
Found at i:57606076 original size:28 final size:28
Alignment explanation
Indices: 57605987--57606078 Score: 91
Period size: 28 Copynumber: 3.3 Consensus size: 28
57605977 AACCGAGCAA
57605987 TATGTGTGCGAGATCGGGTGTAAGGCAC
1 TATGTGTGCGAGATCGGGTGTAAGGCAC
* ** *
57606015 TATGTGTGCGAAAT--TAT-TAACCGAGAAC
1 TATGTGTGCGAGATCGGGTGTAA--G-GCAC
57606043 TATGTGTGCGAGATCGGGTGTAAGGCAC
1 TATGTGTGCGAGATCGGGTGTAAGGCAC
*
57606071 TGTGTGTG
1 TATGTGTG
57606079 TGCAAAATTA
Statistics
Matches: 49, Mismatches: 9, Indels: 12
0.70 0.13 0.17
Matches are distributed among these distances:
25 3 0.06
26 1 0.02
27 1 0.02
28 39 0.80
29 1 0.02
30 1 0.02
31 3 0.06
ACGTcount: A:0.24, C:0.13, G:0.35, T:0.28
Consensus pattern (28 bp):
TATGTGTGCGAGATCGGGTGTAAGGCAC
Found at i:57613718 original size:28 final size:28
Alignment explanation
Indices: 57613687--57613788 Score: 111
Period size: 28 Copynumber: 3.6 Consensus size: 28
57613677 ATGAATATAT
57613687 GCACTATGTGTGCGAGATTAGTAACCGA
1 GCACTATGTGTGCGAGATTAGTAACCGA
* *
57613715 GCACTATGTGTGCAAGATCGAGTGTAA--G-
1 GCACTATGTGTGCGAGAT-TA--GTAACCGA
* *
57613743 GCACTATGTGTGCGAAATTATTAACCGA
1 GCACTATGTGTGCGAGATTAGTAACCGA
*
57613771 GCACTATGTGTACGAGAT
1 GCACTATGTGTGCGAGAT
57613789 CGGGTGTAAG
Statistics
Matches: 60, Mismatches: 8, Indels: 12
0.75 0.10 0.15
Matches are distributed among these distances:
25 3 0.05
27 2 0.03
28 49 0.82
29 2 0.03
31 4 0.07
ACGTcount: A:0.29, C:0.17, G:0.27, T:0.26
Consensus pattern (28 bp):
GCACTATGTGTGCGAGATTAGTAACCGA
Found at i:57613773 original size:56 final size:56
Alignment explanation
Indices: 57613687--57613803 Score: 189
Period size: 56 Copynumber: 2.1 Consensus size: 56
57613677 ATGAATATAT
* *
57613687 GCACTATGTGTGCGAGATTAGTAACCGAGCACTATGTGTGCAAGATCGAGTGTAAG
1 GCACTATGTGTGCGAAATTAGTAACCGAGCACTATGTGTACAAGATCGAGTGTAAG
* * *
57613743 GCACTATGTGTGCGAAATTATTAACCGAGCACTATGTGTACGAGATCGGGTGTAAG
1 GCACTATGTGTGCGAAATTAGTAACCGAGCACTATGTGTACAAGATCGAGTGTAAG
57613799 GCACT
1 GCACT
57613804 GTGATACGAG
Statistics
Matches: 56, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
56 56 1.00
ACGTcount: A:0.28, C:0.17, G:0.29, T:0.26
Consensus pattern (56 bp):
GCACTATGTGTGCGAAATTAGTAACCGAGCACTATGTGTACAAGATCGAGTGTAAG
Found at i:57613802 original size:28 final size:28
Alignment explanation
Indices: 57613715--57613803 Score: 85
Period size: 28 Copynumber: 3.2 Consensus size: 28
57613705 TAGTAACCGA
*
57613715 GCACTATGTGTGCAAGATCGAGTGTAAG
1 GCACTATGTGTGCGAGATCGAGTGTAAG
* *
57613743 GCACTATGTGTGCGAAAT-TA-T-TAACCG
1 GCACTATGTGTGCGAGATCGAGTGTAA--G
* *
57613770 AGCACTATGTGTACGAGATCGGGTGTAAG
1 -GCACTATGTGTGCGAGATCGAGTGTAAG
57613799 GCACT
1 GCACT
57613804 GTGATACGAG
Statistics
Matches: 48, Mismatches: 7, Indels: 12
0.72 0.10 0.18
Matches are distributed among these distances:
25 3 0.06
26 1 0.02
27 2 0.04
28 37 0.77
29 1 0.02
30 1 0.02
31 3 0.06
ACGTcount: A:0.28, C:0.17, G:0.29, T:0.26
Consensus pattern (28 bp):
GCACTATGTGTGCGAGATCGAGTGTAAG
Found at i:57617103 original size:13 final size:14
Alignment explanation
Indices: 57617082--57617114 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
57617072 TTTATTAATG
57617082 AAATATATTAAA-AT
1 AAAT-TATTAAATAT
57617096 AAATTATTAAATAT
1 AAATTATTAAATAT
57617110 AAATT
1 AAATT
57617115 TATATTTTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 7 0.39
14 11 0.61
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (14 bp):
AAATTATTAAATAT
Found at i:57618038 original size:21 final size:20
Alignment explanation
Indices: 57618009--57618048 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
57617999 AATGGCTCCG
57618009 ATCTAATTGAAAGAATTGAA
1 ATCTAATTGAAAGAATTGAA
* *
57618029 ATCTCAATTGCAAGAGTTGA
1 ATCT-AATTGAAAGAATTGA
57618049 CAGATAAGGG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.42, C:0.10, G:0.17, T:0.30
Consensus pattern (20 bp):
ATCTAATTGAAAGAATTGAA
Found at i:57619694 original size:30 final size:30
Alignment explanation
Indices: 57619660--57619718 Score: 91
Period size: 30 Copynumber: 2.0 Consensus size: 30
57619650 ATTTTCGGGC
* *
57619660 CTAGGGGTAAAATGGTCATTTTGTCAAAGT
1 CTAGGGGCAAAATGGTCATTTTGCCAAAGT
*
57619690 CTAGGGGCACAATGGTCATTTTGCCAAAG
1 CTAGGGGCAAAATGGTCATTTTGCCAAAG
57619719 ATATGAATAC
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.29, C:0.15, G:0.27, T:0.29
Consensus pattern (30 bp):
CTAGGGGCAAAATGGTCATTTTGCCAAAGT
Found at i:57622605 original size:93 final size:93
Alignment explanation
Indices: 57622490--57622660 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
57622480 GCCCCTAAGT
* *
57622490 GAACTCGGACTCAACTCAACAAGCTCGGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACCCAACTCAACAAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
57622555 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
*
57622583 GAACTCGGACCCAACTCAACAAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACCCAACTCAACAAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
57622648 TGAGTTCGGATGC
66 CGAGTTCGGATGC
57622661 TCAACCATCC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGGACCCAACTCAACAAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:57622657 original size:46 final size:46
Alignment explanation
Indices: 57622485--57622657 Score: 183
Period size: 46 Copynumber: 3.7 Consensus size: 46
57622475 AACCCGCCCC
* *
57622485 TAAGTGAACTCGGACTCAACTCAACAAGCTCGGGCATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACAAGTTCGGACATTCGCATCCA
* * *
57622531 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT--T
1 TAAGTGAACTCGGACTCAACTCAACAAGTTCGGA---C-A-TTCGCATCCA
* * *
57622579 TCA-CGAACTCGGACCCAACTCAACAAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACAAGTTCGGACATTCGCATCCA
**
57622624 TAAGTGAACTCGGACTCAACTCAATGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACAAGTTCGGA
57622658 TGCTCAACCA
Statistics
Matches: 102, Mismatches: 16, Indels: 18
0.75 0.12 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 2 0.02
46 57 0.56
47 27 0.26
48 2 0.02
49 1 0.01
50 4 0.04
51 2 0.02
ACGTcount: A:0.31, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACAAGTTCGGACATTCGCATCCA
Found at i:57623114 original size:30 final size:30
Alignment explanation
Indices: 57623080--57623139 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
57623070 ATTTAATACG
57623080 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
57623110 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
57623140 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:57628080 original size:27 final size:27
Alignment explanation
Indices: 57628050--57628227 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
57628040 ATATTGAGTC
* * * *
57628050 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
57628077 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
57628104 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
57628132 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
57628159 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
57628186 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
57628213 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
57628228 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Done.