Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100714657
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 3970000 characters in sequence are not A, C, G, or T
File 185 of 318
Found at i:58000059 original size:27 final size:27
Alignment explanation
Indices: 57999787--58000069 Score: 169
Period size: 27 Copynumber: 10.4 Consensus size: 27
57999777 ATTACCAAAG
* * *
57999787 TACCCTCGATTTACAGAATTACTATTC
1 TACCCTCGATTTATAAAATTACTATTT
* *
57999814 TACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTATAAAATTACTATTT
* *
57999841 TACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTATAAAATTACTATTT
* ***
57999868 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTCGATTTATAAAATTACTATTT
* * ***
57999895 TACCC-CTGGTTTGTAAAATTACTAAAA
1 TACCCTC-GATTTATAAAATTACTATTT
* * **
57999922 TA-CCTCCTAATTTGTAAAATTACTGA-AA
1 TACCCT-C-GATTTATAAAATTACT-ATTT
* * ***
57999950 TACCCTTGACTTGTA-AAAATTACCAAAG
1 TACCCTCGA-TT-TATAAAATTACTATTT
* * *
57999978 TACCCTCGATTTATAGAATTATTGTTT
1 TACCCTCGATTTATAAAATTACTATTT
* * *
58000005 TACCTTCGATTTACAGAATTACTATTT
1 TACCCTCGATTTATAAAATTACTATTT
* **
58000032 TACCCTTGATTTATAAAATTACCGTTT
1 TACCCTCGATTTATAAAATTACTATTT
*
58000059 TACTCTCGATT
1 TACCCTCGATT
58000070 GTGAAATTAC
Statistics
Matches: 206, Mismatches: 41, Indels: 18
0.78 0.15 0.07
Matches are distributed among these distances:
26 5 0.02
27 157 0.76
28 39 0.19
29 5 0.02
ACGTcount: A:0.33, C:0.20, G:0.08, T:0.39
Consensus pattern (27 bp):
TACCCTCGATTTATAAAATTACTATTT
Found at i:58000252 original size:27 final size:27
Alignment explanation
Indices: 57999868--58000254 Score: 197
Period size: 27 Copynumber: 14.3 Consensus size: 27
57999858 ATTACTGTTT
* ** *
57999868 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTTGATTTGTAAAATTACCAAAA
* * *
57999895 TACCCCTGGTTTGTAAAATTACTAAAA
1 TACCCTTGATTTGTAAAATTACCAAAA
* * **
57999922 TACCTCCTAATTTGTAAAATTACTGAAA
1 TACC-CTTGATTTGTAAAATTACCAAAA
* *
57999950 TACCCTTGACTTGTAAAAATTACCAAAG
1 TACCCTTGATTTGT-AAAATTACCAAAA
* * * ******
57999978 TACCCTCGATTTATAGAATTATTGTTT
1 TACCCTTGATTTGTAAAATTACCAAAA
** * * ***
58000005 TA-CCTTCGATTTACAGAATTACTATTT
1 TACCCTT-GATTTGTAAAATTACCAAAA
* ****
58000032 TACCCTTGATTTATAAAATTACCGTTT
1 TACCCTTGATTTGTAAAATTACCAAAA
* * * **
58000059 TACTCTCGA-TTGTGAAATTACTGAAA
1 TACCCTTGATTTGTAAAATTACCAAAA
* ** *
58000085 TACCCCT-ATAGGGTAGAATTACCAAAA
1 TACCCTTGAT-TTGTAAAATTACCAAAA
* *
58000112 CACCCCT-AGTTTGTAAAATTACCAAAA
1 TACCCTTGA-TTTGTAAAATTACCAAAA
* * *
58000139 TACCATTGGTTTGTGAAATTACCAAAA
1 TACCCTTGATTTGTAAAATTACCAAAA
*
58000166 TACCCTTAATTTGTAAAATTACCAAAA
1 TACCCTTGATTTGTAAAATTACCAAAA
* ** *
58000193 TACCCCTGATTTACAAAATTACAAAAA
1 TACCCTTGATTTGTAAAATTACCAAAA
* *
58000220 TACCCTTGATTTGTAGATTTACCAAAA
1 TACCCTTGATTTGTAAAATTACCAAAA
*
58000247 CACCCTTG
1 TACCCTTG
58000255 TAAGATGAAA
Statistics
Matches: 278, Mismatches: 74, Indels: 16
0.76 0.20 0.04
Matches are distributed among these distances:
25 1 0.00
26 18 0.06
27 209 0.75
28 50 0.18
ACGTcount: A:0.37, C:0.20, G:0.09, T:0.34
Consensus pattern (27 bp):
TACCCTTGATTTGTAAAATTACCAAAA
Found at i:58001081 original size:20 final size:20
Alignment explanation
Indices: 58001056--58001122 Score: 100
Period size: 20 Copynumber: 3.4 Consensus size: 20
58001046 GATATGATAT
*
58001056 ACATGAT-TGATATGATATGC
1 ACATGATATG-TATGAAATGC
*
58001076 ACATGATATGTATAAAATGC
1 ACATGATATGTATGAAATGC
58001096 ACATGATATGTATGAAATGC
1 ACATGATATGTATGAAATGC
58001116 ACATGAT
1 ACATGAT
58001123 GTATTCATAA
Statistics
Matches: 43, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
20 41 0.95
21 2 0.05
ACGTcount: A:0.40, C:0.10, G:0.18, T:0.31
Consensus pattern (20 bp):
ACATGATATGTATGAAATGC
Found at i:58001251 original size:52 final size:50
Alignment explanation
Indices: 58001172--58001283 Score: 188
Period size: 52 Copynumber: 2.2 Consensus size: 50
58001162 GAGGAAGTGC
*
58001172 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAA-GGATT-TGCCCCAGTTTACCG
*
58001224 GAAAGGGCTTATGCCCCAGTTTATTGAAAAGGATTTGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGATTTGCCCCAGTTTACCG
58001274 AAAAGGGCTT
1 AAAAGGGCTT
58001284 TGCACAAGTT
Statistics
Matches: 57, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
50 24 0.42
51 4 0.07
52 29 0.51
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.27
Consensus pattern (50 bp):
AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGATTTGCCCCAGTTTACCG
Found at i:58001293 original size:25 final size:26
Alignment explanation
Indices: 58001172--58001283 Score: 156
Period size: 26 Copynumber: 4.4 Consensus size: 26
58001162 GAGGAAGTGC
**
58001172 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCG
58001198 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
* **
58001224 GAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCG
*
58001250 AAAA-GGATT-TGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
58001274 AAAAGGGCTT
1 AAAAGGGCTT
58001284 TGCACAAGTT
Statistics
Matches: 75, Mismatches: 10, Indels: 3
0.85 0.11 0.03
Matches are distributed among these distances:
24 17 0.23
25 8 0.11
26 50 0.67
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.27
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTACCG
Found at i:58001564 original size:31 final size:30
Alignment explanation
Indices: 58001512--58001594 Score: 123
Period size: 31 Copynumber: 2.7 Consensus size: 30
58001502 CGCTTACAGT
*
58001512 AAAGGCTTCAG-CCAGTTATATGATTTATGA
1 AAAGGCTTCGGCCCAG-TATATGATTTATGA
58001542 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGT-ATATGATTTATGA
*
58001573 AAAGGCTTCGGCTCAGTATATG
1 AAAGGCTTCGGCCCAGTATATG
58001595 TGGAGACTGA
Statistics
Matches: 49, Mismatches: 2, Indels: 4
0.89 0.04 0.07
Matches are distributed among these distances:
30 16 0.33
31 33 0.67
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (30 bp):
AAAGGCTTCGGCCCAGTATATGATTTATGA
Found at i:58005723 original size:20 final size:20
Alignment explanation
Indices: 58005698--58005742 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
58005688 AGGGACTAAA
* *
58005698 ATGAAAAGTTGTAAAATTTG
1 ATGAAAAATTCTAAAATTTG
*
58005718 ATGAAAAATTCTAAAATTTT
1 ATGAAAAATTCTAAAATTTG
58005738 ATGAA
1 ATGAA
58005743 TACATATGCT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.49, C:0.02, G:0.13, T:0.36
Consensus pattern (20 bp):
ATGAAAAATTCTAAAATTTG
Found at i:58007494 original size:29 final size:29
Alignment explanation
Indices: 58007452--58007516 Score: 130
Period size: 29 Copynumber: 2.2 Consensus size: 29
58007442 GTGTCTCAAC
58007452 CGTGTGTGCCACACAGCCTAGAACACGGA
1 CGTGTGTGCCACACAGCCTAGAACACGGA
58007481 CGTGTGTGCCACACAGCCTAGAACACGGA
1 CGTGTGTGCCACACAGCCTAGAACACGGA
58007510 CGTGTGT
1 CGTGTGT
58007517 CTTGGCCGTG
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 36 1.00
ACGTcount: A:0.25, C:0.29, G:0.29, T:0.17
Consensus pattern (29 bp):
CGTGTGTGCCACACAGCCTAGAACACGGA
Found at i:58008224 original size:29 final size:25
Alignment explanation
Indices: 58008171--58008220 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
58008161 TGATGGTTGA
58008171 ATGTTGAATCTTGGTTTTCTTTCTT
1 ATGTTGAATCTTGGTTTTCTTTCTT
58008196 ATGTTGAATCTTGGTTTTCTTTCTT
1 ATGTTGAATCTTGGTTTTCTTTCTT
58008221 TCTTTCATGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.12, C:0.12, G:0.16, T:0.60
Consensus pattern (25 bp):
ATGTTGAATCTTGGTTTTCTTTCTT
Found at i:58011393 original size:30 final size:30
Alignment explanation
Indices: 58011359--58011419 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
58011349 TCCTTAACTC
58011359 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
58011389 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
58011419 A
1 A
58011420 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:58015114 original size:33 final size:33
Alignment explanation
Indices: 58015077--58015154 Score: 129
Period size: 33 Copynumber: 2.3 Consensus size: 33
58015067 GGTATAAAAG
*
58015077 AATGTATATATAGTTTATATTTTTATGCACACA
1 AATGTATATATAGTTTATATTTTTATGCACAAA
58015110 AATGTATATATAGTTTATATTTTTATGCACAAA
1 AATGTATATATAGTTTATATTTTTATGCACAAA
*
58015143 AAGTCTATATAT
1 AA-TGTATATAT
58015155 CTATACAAGT
Statistics
Matches: 42, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
33 34 0.81
34 8 0.19
ACGTcount: A:0.38, C:0.08, G:0.09, T:0.45
Consensus pattern (33 bp):
AATGTATATATAGTTTATATTTTTATGCACAAA
Found at i:58018728 original size:5 final size:5
Alignment explanation
Indices: 58018718--58018744 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
58018708 TTTCGTGTCC
58018718 TTTGT TTTGT TTTGT TTTGT TTTGT TT
1 TTTGT TTTGT TTTGT TTTGT TTTGT TT
58018745 CGTAGTAAAG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.00, C:0.00, G:0.19, T:0.81
Consensus pattern (5 bp):
TTTGT
Found at i:58034568 original size:49 final size:49
Alignment explanation
Indices: 58034502--58034746 Score: 310
Period size: 49 Copynumber: 4.9 Consensus size: 49
58034492 TAGCCAAAGC
* * * *
58034502 TATCTGGTACGCATAGTAGCCTGCACATAGTACTACACATGCGACCAAT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCAAT
* *
58034551 TATCCGGTACATGTAGTAGCCTGCACTTAGTACTACACATGTGACCAAT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCAAT
* *
58034600 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAAC
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACC-AAT
* * * *
58034650 CATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCATAGT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCA-A-T
* * * * *
58034701 TTTCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACC
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACC
58034747 TCACAATAGA
Statistics
Matches: 170, Mismatches: 23, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
49 87 0.51
50 46 0.27
51 37 0.22
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.27
Consensus pattern (49 bp):
TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCAAT
Found at i:58034735 original size:101 final size:98
Alignment explanation
Indices: 58034502--58034746 Score: 319
Period size: 99 Copynumber: 2.5 Consensus size: 98
58034492 TAGCCAAAGC
* * * ** * *
58034502 TATCTGGTACGCATAGTAGCCTGCACATAGTACTACACATGCGACCAATTATCCGGTACATGTAG
1 TATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACACGCGACCAACCATCCGATACACGTAG
*
58034567 TAGCCTGCACTTAGTACTACACATGTGACCAAT
66 TAGCCTGCACTTAGTACTACACACGTGACCAAT
* * * * *
58034600 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACGTA
1 TATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACACGCGACC-AACCATCCGATACACGTA
*
58034665 GTAGCCTGCACTTAGTACTACACACGTGATCATAGT
65 GTAGCCTGCACTTAGTACTACACACGTGACCA-A-T
* *
58034701 TTTCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACC
1 TATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACACGCGACC
58034747 TCACAATAGA
Statistics
Matches: 126, Mismatches: 18, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
98 41 0.33
99 43 0.34
100 1 0.01
101 41 0.33
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.27
Consensus pattern (98 bp):
TATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACACGCGACCAACCATCCGATACACGTAG
TAGCCTGCACTTAGTACTACACACGTGACCAAT
Found at i:58038820 original size:42 final size:42
Alignment explanation
Indices: 58038759--58038885 Score: 152
Period size: 42 Copynumber: 3.0 Consensus size: 42
58038749 CTTCGTTTTC
** *
58038759 TCGATGCCATAGTTCAACTATGGTTTTACACATCTTCACATAA
1 TCGATGCCATAGCCCAACTATGGTTTTACACATATTCACAT-A
*
58038802 T-GATGCCATAGCCCAACTATGGTTTTACACATATTCATATA
1 TCGATGCCATAGCCCAACTATGGTTTTACACATATTCACATA
* * *
58038843 TCGATGCCATAGCCTAGCTATGGTCTTACACGA-A-TCACATA
1 TCGATGCCATAGCCCAACTATGGTTTTACAC-ATATTCACATA
58038884 TC
1 TC
58038886 TCACTGATGC
Statistics
Matches: 74, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
41 10 0.14
42 62 0.84
43 2 0.03
ACGTcount: A:0.30, C:0.24, G:0.13, T:0.32
Consensus pattern (42 bp):
TCGATGCCATAGCCCAACTATGGTTTTACACATATTCACATA
Found at i:58038945 original size:47 final size:48
Alignment explanation
Indices: 58038842--58038967 Score: 161
Period size: 47 Copynumber: 2.7 Consensus size: 48
58038832 ATATTCATAT
* * * * *
58038842 ATCGATGCCATAGCCTAGCTATGGTCTTACACGAATCACATATCTCAC
1 ATCGATGCCATATCCCAGATATGGTCTTATACGAATCACATATATCAC
*
58038890 -T-GATGCCATATCCCAGATATGGTCTTATAC-AGT-AGCATATATCAC
1 ATCGATGCCATATCCCAGATATGGTCTTATACGAATCA-CATATATCAC
58038935 ATCGATGCCATATCCCAGATATGGTCTTATACG
1 ATCGATGCCATATCCCAGATATGGTCTTATACG
58038968 GAAATCACTT
Statistics
Matches: 68, Mismatches: 6, Indels: 8
0.83 0.07 0.10
Matches are distributed among these distances:
44 1 0.01
45 11 0.16
46 26 0.38
47 30 0.44
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (48 bp):
ATCGATGCCATATCCCAGATATGGTCTTATACGAATCACATATATCAC
Found at i:58039026 original size:31 final size:31
Alignment explanation
Indices: 58038991--58039171 Score: 231
Period size: 31 Copynumber: 5.8 Consensus size: 31
58038981 ACTTTCACTT
* *
58038991 GTAGCCGAAGCTACAACTATTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* *
58039022 GTAGCCGGAGCTACCATTTTTTCACTGATCAG
1 GTAGCCGAAGCTACCA-CTTTTCACTGATCAG
*
58039054 GTAGCCGGAGCTACCACTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* *
58039085 GAAGCTGGAA-CTACCGA-TTTTCACTGATCAG
1 GTAGC-CGAAGCTACC-ACTTTTCACTGATCAG
* *
58039116 GTAGCAGAAGCTACCACTTTTCACTGATCAA
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
*
58039147 GTAGCTGAAGCTACCACTTTTCACT
1 GTAGCCGAAGCTACCACTTTTCACT
58039172 TGTCATTTGT
Statistics
Matches: 133, Mismatches: 12, Indels: 10
0.86 0.08 0.06
Matches are distributed among these distances:
30 4 0.03
31 97 0.73
32 32 0.24
ACGTcount: A:0.27, C:0.26, G:0.20, T:0.27
Consensus pattern (31 bp):
GTAGCCGAAGCTACCACTTTTCACTGATCAG
Found at i:58039253 original size:50 final size:51
Alignment explanation
Indices: 58039147--58039275 Score: 190
Period size: 50 Copynumber: 2.5 Consensus size: 51
58039137 CACTGATCAA
* * *
58039147 GTAGCTGAAGCTACCACTTTTCACTTGTCATTTGTCATTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTGTCATTTGTCATTGATCAGATAAGT
* *
58039198 GTAGCCGAAGCTATCACTTATCACTT-TCACTTT-TCCTTGATTAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTGTCA-TTTGTCATTGATCAGATAAGT
58039248 GTAGCCGAAGCTATCACTTATCACTTGT
1 GTAGCCGAAGCTATCACTTATCACTTGT
58039276 TGCCATGGTC
Statistics
Matches: 71, Mismatches: 5, Indels: 4
0.89 0.06 0.05
Matches are distributed among these distances:
50 44 0.62
51 27 0.38
ACGTcount: A:0.26, C:0.22, G:0.16, T:0.36
Consensus pattern (51 bp):
GTAGCCGAAGCTATCACTTATCACTTGTCATTTGTCATTGATCAGATAAGT
Found at i:58046328 original size:22 final size:21
Alignment explanation
Indices: 58046302--58046342 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 21
58046292 CGTAATAAAC
58046302 CCAAAA-AAAATAAATTAAAAAA
1 CCAAAATAAAA-AAA-TAAAAAA
58046324 CCAAAATAAAAAAATAAAA
1 CCAAAATAAAAAAATAAAA
58046343 GGTCCAAATT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 5 0.28
22 9 0.50
23 4 0.22
ACGTcount: A:0.78, C:0.10, G:0.00, T:0.12
Consensus pattern (21 bp):
CCAAAATAAAAAAATAAAAAA
Found at i:58047818 original size:24 final size:24
Alignment explanation
Indices: 58047791--58047837 Score: 94
Period size: 24 Copynumber: 2.0 Consensus size: 24
58047781 AGCCTTACAT
58047791 ATTTAATTATTTTTTATTGTATGA
1 ATTTAATTATTTTTTATTGTATGA
58047815 ATTTAATTATTTTTTATTGTATG
1 ATTTAATTATTTTTTATTGTATG
58047838 TACATTGTCA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.28, C:0.00, G:0.09, T:0.64
Consensus pattern (24 bp):
ATTTAATTATTTTTTATTGTATGA
Found at i:58048295 original size:18 final size:18
Alignment explanation
Indices: 58048252--58048295 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
58048242 CTTTTTTATT
58048252 TATTTGTATAATATTTCA
1 TATTTGTATAATATTTCA
* * * *
58048270 TCTATGTATATTGTTTCA
1 TATTTGTATAATATTTCA
58048288 TATTTGTA
1 TATTTGTA
58048296 ACCTTGATTT
Statistics
Matches: 20, Mismatches: 6, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.27, C:0.07, G:0.09, T:0.57
Consensus pattern (18 bp):
TATTTGTATAATATTTCA
Found at i:58052942 original size:19 final size:18
Alignment explanation
Indices: 58052904--58052943 Score: 53
Period size: 19 Copynumber: 2.2 Consensus size: 18
58052894 ATCTAAAAAG
*
58052904 AAAAATAAAAAAGTACAA
1 AAAAATAAAAAAGAACAA
*
58052922 AAAAATAAAAAAAGAATAA
1 AAAAAT-AAAAAAGAACAA
58052941 AAA
1 AAA
58052944 GAAGAATAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 6 0.32
19 13 0.68
ACGTcount: A:0.82, C:0.03, G:0.05, T:0.10
Consensus pattern (18 bp):
AAAAATAAAAAAGAACAA
Found at i:58053504 original size:9 final size:9
Alignment explanation
Indices: 58053490--58053580 Score: 60
Period size: 9 Copynumber: 9.9 Consensus size: 9
58053480 ATGAGAACTT
58053490 AAAAAAATA
1 AAAAAAATA
58053499 AAAAAAATA
1 AAAAAAATA
*
58053508 AAAAGGAA-A
1 AAAA-AAATA
* *
58053517 AAAACAATC
1 AAAAAAATA
*
58053526 AAAAAAAGA
1 AAAAAAATA
58053535 AAAATAAA-A
1 AAAA-AAATA
*
58053544 AAAAGAATCA
1 AAAAAAAT-A
* *
58053554 ATCAAAAATT
1 A-AAAAAATA
*
58053564 GAAAAAATA
1 AAAAAAATA
58053573 AAAAAAAT
1 AAAAAAAT
58053581 GAGAGGTCAA
Statistics
Matches: 62, Mismatches: 14, Indels: 12
0.70 0.16 0.14
Matches are distributed among these distances:
8 4 0.06
9 46 0.74
10 7 0.11
11 5 0.08
ACGTcount: A:0.79, C:0.04, G:0.05, T:0.11
Consensus pattern (9 bp):
AAAAAAATA
Found at i:58053529 original size:27 final size:26
Alignment explanation
Indices: 58053490--58053580 Score: 76
Period size: 27 Copynumber: 3.3 Consensus size: 26
58053480 ATGAGAACTT
* *
58053490 AAAAAAATAAAAAAAATAAAAAGGAAA
1 AAAAAAATCAAAAAAAGAAAAA-GAAA
* *
58053517 AAAACAATCAAAAAAAGAAAAATAAA
1 AAAAAAATCAAAAAAAGAAAAAGAAA
*
58053543 AAAAAGAATCAATCAAAAATTGAAAAA-ATA
1 AAAAA-AATCAA--AAAAA--GAAAAAGAAA
58053573 AAAAAAAT
1 AAAAAAAT
58053581 GAGAGGTCAA
Statistics
Matches: 53, Mismatches: 6, Indels: 8
0.79 0.09 0.12
Matches are distributed among these distances:
26 7 0.13
27 25 0.47
29 8 0.15
30 7 0.13
31 6 0.11
ACGTcount: A:0.79, C:0.04, G:0.05, T:0.11
Consensus pattern (26 bp):
AAAAAAATCAAAAAAAGAAAAAGAAA
Found at i:58053532 original size:15 final size:15
Alignment explanation
Indices: 58053514--58053561 Score: 55
Period size: 14 Copynumber: 3.1 Consensus size: 15
58053504 AATAAAAAGG
58053514 AAAAAAACAATCAAA
1 AAAAAAACAATCAAA
58053529 AAAAGAAA-AAT-AAA
1 AAAA-AAACAATCAAA
58053543 AAAAAGAATCAATCAAA
1 AAAAA-AA-CAATCAAA
58053560 AA
1 AA
58053562 TTGAAAAAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 8
0.78 0.00 0.22
Matches are distributed among these distances:
13 1 0.04
14 9 0.32
15 7 0.25
16 6 0.21
17 5 0.18
ACGTcount: A:0.79, C:0.08, G:0.04, T:0.08
Consensus pattern (15 bp):
AAAAAAACAATCAAA
Found at i:58054688 original size:64 final size:64
Alignment explanation
Indices: 58054610--58054737 Score: 213
Period size: 64 Copynumber: 2.0 Consensus size: 64
58054600 TCATTCGTAA
*
58054610 CACATCTAGTTAGGAGCATTTGATTCATTTCGATCATAACATCCTAATTATTT-GACATAAGCAT
1 CACATCTAGTTAGGAGCATTTGATTCATTTCAATCATAACATCCTAATTATTTAG-CATAAGCAT
* *
58054674 CACATCTAGTTAGGAGCATTTGATTCATTTCAATCATAGCATTCTAATTATTTAGCATAAGCAT
1 CACATCTAGTTAGGAGCATTTGATTCATTTCAATCATAACATCCTAATTATTTAGCATAAGCAT
58054738 AGATACATGA
Statistics
Matches: 60, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
64 59 0.98
65 1 0.02
ACGTcount: A:0.33, C:0.18, G:0.12, T:0.37
Consensus pattern (64 bp):
CACATCTAGTTAGGAGCATTTGATTCATTTCAATCATAACATCCTAATTATTTAGCATAAGCAT
Found at i:58055048 original size:45 final size:44
Alignment explanation
Indices: 58054943--58055248 Score: 133
Period size: 44 Copynumber: 6.8 Consensus size: 44
58054933 CATAGCAAAC
**
58054943 CTTATCTCCCT-AAGTTGCAGTGGAGCAGGTTGAAGTGACAGGT
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGTGACAGGT
*
58054986 CTTATCTCTCTGAAGTTGCAGTGGAGCAGACTGAAGAT-AGC-GAGT
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAG-TGA-CAG-GT
* * * ** * * * * *
58055031 CTTATTTCCCTGAAGTTGTAGTGCAATAAATTGAAGCTATAAATAAATAGAT
1 CTTATCTCCCTGAAGTTGCAGTG-GA-GCA--G-A-CT-GAAGT-GACAGGT
** * * ***
58055083 CTTATCTCTTTGAAGTTGCAGTAGAGCAGA-T-CA-T-AGCAAAC
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGTGA-CAGGT
* * **
58055124 CTTATCTCCCTGAAGTTGTAGTGGAGTAGGTTGAAGTGACAGGT
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGTGACAGGT
* * **
58055168 CTTATCTCCCTGAAGTTGTAGTGGAGTAGACTGAAGAT-AGCAAAT
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAG-TGA-CAGGT
* * * * *
58055213 CTTATTTCCATGAAGTTGCAATGGAACAGATTGAAG
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAG
58055249 CTATAAATAA
Statistics
Matches: 196, Mismatches: 46, Indels: 40
0.70 0.16 0.14
Matches are distributed among these distances:
40 1 0.01
41 26 0.13
42 2 0.01
43 12 0.06
44 62 0.32
45 59 0.30
46 1 0.01
47 2 0.01
48 1 0.01
49 1 0.01
50 2 0.01
51 4 0.02
52 21 0.11
53 2 0.01
ACGTcount: A:0.30, C:0.16, G:0.25, T:0.30
Consensus pattern (44 bp):
CTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGTGACAGGT
Found at i:58055107 original size:181 final size:182
Alignment explanation
Indices: 58054801--58055354 Score: 878
Period size: 182 Copynumber: 3.1 Consensus size: 182
58054791 TCTGTGAAGT
* * *
58054801 CAGGTCTTATCTCCCTGAAGTTGCAATGGAGCA-ACTGAAGATAACGAATCTTATTTCCTTGAAG
1 CAGGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCGAATCTTATTTCCATGAAG
* * *
58054865 ATGCAGTGGAACAGATTGAAGCTTTAAATAAACAGATCTTATCTCTTTGAAGTTCCAGTAGAGCA
66 TTGCAGTGGAACAGATTGAAGCTATAAATAAACAGATCTTATCTCTTTGAAGTTGCAGTAGAGCA
*
58054930 GATCATAGCAAACCTTATCTCCCT-AAGTTGCAGTGGAGCAGGTTGAAGTGA
131 GATCATAGCAAACCTTATCTCCCTAAAGTTGTAGTGGAGCAGGTTGAAGTGA
* * *
58054981 CAGGTCTTATCTCTCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCGAGTCTTATTTCCCTGAAG
1 CAGGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCGAATCTTATTTCCATGAAG
* * * * *
58055046 TTGTAGTGCAATAAATTGAAGCTATAAATAAATAGATCTTATCTCTTTGAAGTTGCAGTAGAGCA
66 TTGCAGTGGAACAGATTGAAGCTATAAATAAACAGATCTTATCTCTTTGAAGTTGCAGTAGAGCA
* *
58055111 GATCATAGCAAACCTTATCTCCCTGAAGTTGTAGTGGAGTAGGTTGAAGTGA
131 GATCATAGCAAACCTTATCTCCCTAAAGTTGTAGTGGAGCAGGTTGAAGTGA
* * *
58055163 CAGGTCTTATCTCCCTGAAGTTGTAGTGGAGTAGACTGAAGATAGCAAATCTTATTTCCATGAAG
1 CAGGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCGAATCTTATTTCCATGAAG
* * * *
58055228 TTGCAATGGAACAGATTGAAGCTATAAATAAACAGATCTTATATCTCTGAAGTTGCAGTAGAGTA
66 TTGCAGTGGAACAGATTGAAGCTATAAATAAACAGATCTTATCTCTTTGAAGTTGCAGTAGAGCA
58055293 GATCATAGCAAACCTTATCTCCCTAAAGTTGTAGTGGAGCAGGTTGAAGTGA
131 GATCATAGCAAACCTTATCTCCCTAAAGTTGTAGTGGAGCAGGTTGAAGTGA
58055345 CAGGTCTTAT
1 CAGGTCTTAT
58055355 TGTAGTGGAG
Statistics
Matches: 340, Mismatches: 32, Indels: 2
0.91 0.09 0.01
Matches are distributed among these distances:
180 31 0.09
181 109 0.32
182 200 0.59
ACGTcount: A:0.31, C:0.16, G:0.23, T:0.30
Consensus pattern (182 bp):
CAGGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCGAATCTTATTTCCATGAAG
TTGCAGTGGAACAGATTGAAGCTATAAATAAACAGATCTTATCTCTTTGAAGTTGCAGTAGAGCA
GATCATAGCAAACCTTATCTCCCTAAAGTTGTAGTGGAGCAGGTTGAAGTGA
Found at i:58055158 original size:93 final size:93
Alignment explanation
Indices: 58054980--58055341 Score: 308
Period size: 93 Copynumber: 3.9 Consensus size: 93
58054970 GGTTGAAGTG
* * * * ** *
58054980 ACAGGTCTTATCTCTCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCGAGTCTTATTTCCCTGAA
1 ACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGA-T---CATAGCAAACCTTATCTCCCTGAA
* * *
58055045 GTTGTAGTGCAATAAATTGAAGCTATAAATAA
62 GTTGTAGTGGAACAGATTGAAGCTATAAATAA
* *
58055077 ATAGATCTTATCTCTTTGAAGTTGCAGTAGAGCAGATCATAGCAAACCTTATCTCCCTGAAGTTG
1 ACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCATAGCAAACCTTATCTCCCTGAAGTTG
** * *
58055142 TAGTGGAGTAGGTTGAAG-------T-G
66 TAGTGGAACAGATTGAAGCTATAAATAA
* * * * ** * * *
58055162 ACAGGTCTTATCTCCCTGAAGTTGTAGTGGAGTAGACTGAAGATAGCAAATCTTATTTCCATGAA
1 ACAGATCTTATCTCTCTGAAGTTGCAGT--AG-AG-CAGATCATAGCAAACCTTATCTCCCTGAA
* *
58055227 GTTGCAATGGAACAGATTGAAGCTATAAATAA
62 GTTGTAGTGGAACAGATTGAAGCTATAAATAA
* * *
58055259 ACAGATCTTATATCTCTGAAGTTGCAGTAGAGTAGATCATAGCAAACCTTATCTCCCTAAAGTTG
1 ACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCATAGCAAACCTTATCTCCCTGAAGTTG
* *
58055324 TAGTGGAGCAGGTTGAAG
66 TAGTGGAACAGATTGAAG
58055342 TGACAGGTCT
Statistics
Matches: 206, Mismatches: 47, Indels: 28
0.73 0.17 0.10
Matches are distributed among these distances:
85 23 0.11
86 1 0.00
87 2 0.01
88 2 0.01
89 40 0.19
93 76 0.37
94 2 0.01
95 2 0.01
96 2 0.01
97 56 0.27
ACGTcount: A:0.32, C:0.15, G:0.23, T:0.30
Consensus pattern (93 bp):
ACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCATAGCAAACCTTATCTCCCTGAAGTTG
TAGTGGAACAGATTGAAGCTATAAATAA
Found at i:58055363 original size:33 final size:33
Alignment explanation
Indices: 58055321--58055387 Score: 134
Period size: 33 Copynumber: 2.0 Consensus size: 33
58055311 CTCCCTAAAG
58055321 TTGTAGTGGAGCAGGTTGAAGTGACAGGTCTTA
1 TTGTAGTGGAGCAGGTTGAAGTGACAGGTCTTA
58055354 TTGTAGTGGAGCAGGTTGAAGTGACAGGTCTTA
1 TTGTAGTGGAGCAGGTTGAAGTGACAGGTCTTA
58055387 T
1 T
58055388 CTCCCTAAAG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.24, C:0.09, G:0.36, T:0.31
Consensus pattern (33 bp):
TTGTAGTGGAGCAGGTTGAAGTGACAGGTCTTA
Found at i:58056014 original size:352 final size:351
Alignment explanation
Indices: 58055503--58056270 Score: 1119
Period size: 352 Copynumber: 2.2 Consensus size: 351
58055493 AGTTATAGTA
* * **
58055503 GAGCAGATTTAAGCCACTAGCCTTATCTCTCTGAGGTAGCAAGAGAGCG-GGTTGGTGATTGTAG
1 GAGCAGATTTTAGCCACCAGCCTTA-CTCTCTGAGGTAGCAAGAGAG-GAGGTTGGCAATTGTAG
* * * * *
58055567 TCTTATCTTCCTGAGGCAGTAAGGAAGTAGATAAAGATTGAAGACTTATCTCCCTAAGCAGTAGT
64 CCTTATCTTCCTAAGGCAGCAAGGAAGCAGATAAAGATTGAAAACTTATCTCCCTAAGCAGTAGT
* * * * ** *
58055632 GGAGCAGATTGAAGACGGCGAATCTTATCTCCATGTATCAGTAATGGAGAAGATTTAAGCCACCA
129 GGAGAAGATCGAAGACGGAGAATCTTATCTCCATGAATCAACAATGAAGAAGATTTAAGCCACCA
* * *
58055697 GCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGGTGATTGTATTCTTATCTTCCTAAAATAGC
194 ACCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGGTGATTGTAGTCTTATCTTCCTAAAATAGA
* *
58055762 AAGGAAGCAAACTGAAGATTGAAGATCTTATCTCTATAAGCAGTTGTGGAGCAGATCGAAGATGG
259 AAGGAAGCAAACTGAAGATTGAAGATCTTATCTCCATAAGAAGTTGTGGAGCAGATCGAAGATGG
*
58055827 CGAGTCTTATATTCCCAAGGTAGCAGGG
324 AGAGTCTTATATTCCCAAGGTAGCAGGG
* * *
58055855 GAGCAAATTTTAGCCACCAGCCTTA-TCTCTAAGGTAGCAAAAGAGGAGGTTGGCAATTGTAGCC
1 GAGCAGATTTTAGCCACCAGCCTTACTCTCTGAGGTAGCAAGAGAGGAGGTTGGCAATTGTAGCC
* *
58055919 TTATCTTCCTAAGGTAGCAAGGAAGCAGAATGAAGATTGAAAATCTTATCTCCCTAAGCAGTAGT
66 TTATCTTCCTAAGGCAGCAAGGAAGCAG-ATAAAGATTGAAAA-CTTATCTCCCTAAGCAGTAGT
*
58055984 GGAGAAGATCGAAGACGGAGAATCTTATCTCCATGAATCAACAATGAAGTAGATTTAAGCCACCA
129 GGAGAAGATCGAAGACGGAGAATCTTATCTCCATGAATCAACAATGAAGAAGATTTAAGCCACCA
* **
58056049 ACCTTATCTTTCTGAGGTAGCAAGAGAGCAGGTTGGTGATTGTAGTCTTATCTTCCTAAGGTAGA
194 ACCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGGTGATTGTAGTCTTATCTTCCTAAAATAGA
* * * * *
58056114 AAGGAAGCAGACTGAAGATTGAAGATCTTATCTCCCTACGAAGTTGTGGAGTAGATTGAAGATGG
259 AAGGAAGCAAACTGAAGATTGAAGATCTTATCTCCATAAGAAGTTGTGGAGCAGATCGAAGATGG
* *
58056179 AGAGTCTTATCTTCCCGAGGTAGCAGGG
324 AGAGTCTTATATTCCCAAGGTAGCAGGG
*
58056207 GAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGGCAATT-TAGC
1 GAGCAGATTTTAGCCACCAGCCTTA-CTCTCTGAGGTAGCAAGAGAGGAGGTTGGCAATTGTAGC
58056271 AAGGAAGCAG
Statistics
Matches: 369, Mismatches: 42, Indels: 9
0.88 0.10 0.02
Matches are distributed among these distances:
349 1 0.00
350 56 0.15
351 12 0.03
352 266 0.72
353 4 0.01
354 30 0.08
ACGTcount: A:0.31, C:0.17, G:0.26, T:0.26
Consensus pattern (351 bp):
GAGCAGATTTTAGCCACCAGCCTTACTCTCTGAGGTAGCAAGAGAGGAGGTTGGCAATTGTAGCC
TTATCTTCCTAAGGCAGCAAGGAAGCAGATAAAGATTGAAAACTTATCTCCCTAAGCAGTAGTGG
AGAAGATCGAAGACGGAGAATCTTATCTCCATGAATCAACAATGAAGAAGATTTAAGCCACCAAC
CTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGGTGATTGTAGTCTTATCTTCCTAAAATAGAAA
GGAAGCAAACTGAAGATTGAAGATCTTATCTCCATAAGAAGTTGTGGAGCAGATCGAAGATGGAG
AGTCTTATATTCCCAAGGTAGCAGGG
Found at i:58056132 original size:177 final size:176
Alignment explanation
Indices: 58055503--58056261 Score: 918
Period size: 177 Copynumber: 4.3 Consensus size: 176
58055493 AGTTATAGTA
* *
58055503 GAGCAGATTTAAGCCACTAGCCTTATCTCTCTGAGGTAGCAAGAGAGCGGGTTGGTGATTGTAGT
1 GAGCAGATTTAAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGGTGATTGTAGT
* * * * *
58055568 CTTATCTTCCTGAGGCAGTAAGGAAGTAGA-TAAAGATTGAAGA-CTTATCTCCCTAAGCAGTAG
66 CTTATCTTCCTAAGGTAGCAAGGAAGCAGACTGAAGATTGAAGATCTTATCTCCCTAAGCAGTAG
* * * * *
58055631 TGGAGCAGATTGAAGACGGCGAATCTTATCTCCATGTATCAGTAATG
131 TGGAGCAGATCGAAGACGGAGAATCTTATCTCCATGAAT-AGCAAGG
* *
58055678 GAGAAGATTTAAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGGTGATTGTATT
1 GAGCAGATTTAAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGGTGATTGTAGT
** * ** *
58055743 CTTATCTTCCTAAAATAGCAAGGAAGCAAACTGAAGATTGAAGATCTTATCTCTATAAGCAGTTG
66 CTTATCTTCCTAAGGTAGCAAGGAAGCAGACTGAAGATTGAAGATCTTATCTCCCTAAGCAGTAG
* * * * * * *
58055808 TGGAGCAGATCGAAGATGGCGAGTCTTATATTCCCAAG-GTAGCAGGG
131 TGGAGCAGATCGAAGACGGAGAATCTTAT-CT-CCATGAATAGCAAGG
* * * * * ** *
58055855 GAGCAAATTTTAGCCACCAGCCTTA--TCTCTAAGGTAGCAAAAGAGGAGGTTGGCAATTGTAGC
1 GAGCAGATTTAAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGGTGATTGTAGT
* *
58055918 CTTATCTTCCTAAGGTAGCAAGGAAGCAGAATGAAGATTGAAAATCTTATCTCCCTAAGCAGTAG
66 CTTATCTTCCTAAGGTAGCAAGGAAGCAGACTGAAGATTGAAGATCTTATCTCCCTAAGCAGTAG
* * *
58055983 TGGAGAAGATCGAAGACGGAGAATCTTATCTCCATGAATCAACAATG
131 TGGAGCAGATCGAAGACGGAGAATCTTATCTCCATGAAT-AGCAAGG
* * * *
58056030 AAGTAGATTTAAGCCACCAACCTTATCTTTCTGAGGTAGCAAGAGAGCAGGTTGGTGATTGTAGT
1 GAGCAGATTTAAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGGTGATTGTAGT
* * * *
58056095 CTTATCTTCCTAAGGTAGAAAGGAAGCAGACTGAAGATTGAAGATCTTATCTCCCTACGAAGTTG
66 CTTATCTTCCTAAGGTAGCAAGGAAGCAGACTGAAGATTGAAGATCTTATCTCCCTAAGCAGTAG
* * * * * * *
58056160 TGGAGTAGATTGAAGATGGAGAGTCTTATCTTCC-CGAGGTAGCAGGG
131 TGGAGCAGATCGAAGACGGAGAATCTTATC-TCCATGA-ATAGCAAGG
*
58056207 GAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGG
1 GAGCAGATTTAAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGG
58056262 CAATTTAGCA
Statistics
Matches: 490, Mismatches: 84, Indels: 18
0.83 0.14 0.03
Matches are distributed among these distances:
173 4 0.01
174 2 0.00
175 221 0.45
176 12 0.02
177 241 0.49
178 6 0.01
179 4 0.01
ACGTcount: A:0.31, C:0.17, G:0.26, T:0.26
Consensus pattern (176 bp):
GAGCAGATTTAAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGGTGATTGTAGT
CTTATCTTCCTAAGGTAGCAAGGAAGCAGACTGAAGATTGAAGATCTTATCTCCCTAAGCAGTAG
TGGAGCAGATCGAAGACGGAGAATCTTATCTCCATGAATAGCAAGG
Found at i:58057896 original size:17 final size:17
Alignment explanation
Indices: 58057860--58057892 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
58057850 TTGAGTCTTT
*
58057860 TTATTTTATATAATTCA
1 TTATTTTATAAAATTCA
58057877 TTATTTT-TAAAATTCA
1 TTATTTTATAAAATTCA
58057893 ATTAACATTC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.36, C:0.06, G:0.00, T:0.58
Consensus pattern (17 bp):
TTATTTTATAAAATTCA
Found at i:58067717 original size:27 final size:27
Alignment explanation
Indices: 58067541--58067722 Score: 177
Period size: 27 Copynumber: 6.8 Consensus size: 27
58067531 CATTTGTCTC
* *
58067541 ATAGGGGTATTACAGTCATTTTACCCT
1 ATAGGGGTATTTCGGTCATTTTACCCT
* * * *
58067568 ACAGGGGTATTTTGGTTATCTTACCCT
1 ATAGGGGTATTTCGGTCATTTTACCCT
* *
58067595 AAAGGGGTATTTCGATCATTTTACCCT
1 ATAGGGGTATTTCGGTCATTTTACCCT
* ** * *
58067622 ACATAGGTATTTCGATCATTTTAACCT
1 ATAGGGGTATTTCGGTCATTTTACCCT
* * *
58067649 ATGGGGGT-TTTCAGTTATTTTACCCT
1 ATAGGGGTATTTCGGTCATTTTACCCT
* *
58067675 ATAGGGGTATTCCGGTCATTTTACCTT
1 ATAGGGGTATTTCGGTCATTTTACCCT
* *
58067702 ATGGGGGTATTTCGGTAATTT
1 ATAGGGGTATTTCGGTCATTT
58067723 ACAAACTGGG
Statistics
Matches: 123, Mismatches: 31, Indels: 2
0.79 0.20 0.01
Matches are distributed among these distances:
26 21 0.17
27 102 0.83
ACGTcount: A:0.22, C:0.16, G:0.21, T:0.41
Consensus pattern (27 bp):
ATAGGGGTATTTCGGTCATTTTACCCT
Found at i:58067724 original size:53 final size:52
Alignment explanation
Indices: 58067558--58067724 Score: 165
Period size: 53 Copynumber: 3.1 Consensus size: 52
58067548 TATTACAGTC
* * * **
58067558 ATTTTACCCTACAGGGGTATTTTGGTTATCTTACCCTAAAGGGGTATTTCGAT
1 ATTTTACCCTACAGGGGTATTTCGGTCATTTTA-CCTATGGGGGTATTTCGAT
** * *
58067611 CATTTTACCCTACATAGGTATTTCGATCATTTTAACCTATGGGGGT-TTTCAGTT
1 -ATTTTACCCTACAGGGGTATTTCGGTCATTTT-ACCTATGGGGGTATTTC-GAT
* * *
58067665 ATTTTACCCTATAGGGGTATTCCGGTCATTTTACCTTATGGGGGTATTTCGGT
1 ATTTTACCCTACAGGGGTATTTCGGTCATTTTACC-TATGGGGGTATTTCGAT
*
58067718 AATTTAC
1 ATTTTAC
58067725 AAACTGGGGT
Statistics
Matches: 93, Mismatches: 16, Indels: 9
0.79 0.14 0.08
Matches are distributed among these distances:
52 3 0.03
53 48 0.52
54 41 0.44
55 1 0.01
ACGTcount: A:0.22, C:0.17, G:0.20, T:0.41
Consensus pattern (52 bp):
ATTTTACCCTACAGGGGTATTTCGGTCATTTTACCTATGGGGGTATTTCGAT
Found at i:58070618 original size:39 final size:39
Alignment explanation
Indices: 58070564--58070874 Score: 496
Period size: 39 Copynumber: 8.0 Consensus size: 39
58070554 AAGACACTGA
58070564 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
*
58070603 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTACTGG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
* *
58070642 AAATATATCCAGGCTAAAGTCCCGCAGGCTTCGTGCTGG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
* * * *
58070681 AAATATATCTGGGCCAAAGTCCCACAGGCTTCGTGCTGG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
***
58070720 AAATGTATCCAAACTAAAGTCCCGCAGGCTTCGTGCTGG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
*
58070759 AAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTGCTGG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
*
58070798 AAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTGCTGG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
* *
58070837 AAATGTATCCGGGTTAAAGTCCCGCAGGCTTTGTGCTG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTG
58070875 ATAAATAATT
Statistics
Matches: 250, Mismatches: 22, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 250 1.00
ACGTcount: A:0.23, C:0.26, G:0.28, T:0.23
Consensus pattern (39 bp):
AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
Found at i:58075937 original size:79 final size:80
Alignment explanation
Indices: 58075838--58076020 Score: 221
Period size: 79 Copynumber: 2.3 Consensus size: 80
58075828 TACTCGTTCA
* * *
58075838 AATGCCTTTGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
* *
58075901 ATTTAGTAAC-TCGCACC
64 ATATAGTAACTTAGCA-C
**
58075918 AATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGAT
1 AATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGAT
* *
58075982 ATGGTCACTTAGCAC
66 ATAGTAACTTAGCAC
*
58075997 AAGGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
58076021 CATCATTCGA
Statistics
Matches: 89, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 59 0.66
80 27 0.30
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (80 bp):
AATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGAT
ATAGTAACTTAGCAC
Found at i:58076020 original size:40 final size:40
Alignment explanation
Indices: 58075817--58076020 Score: 220
Period size: 40 Copynumber: 5.1 Consensus size: 40
58075807 CGGAATTTAA
** * *
58075817 CCGGATATAGCT-ACTCGTTCAAATGCCTTTGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
58075857 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
58075897 CCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
58075936 CCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * * *
58075976 CCGGATATGGTCACTTAGCAC-AAGGCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
58076016 CCGGA
1 CCGGA
58076021 CATCATTCGA
Statistics
Matches: 139, Mismatches: 18, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.24
40 95 0.68
41 9 0.06
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:58078174 original size:13 final size:13
Alignment explanation
Indices: 58078156--58078180 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
58078146 TAATGGTATA
58078156 TTGAATCCATGAC
1 TTGAATCCATGAC
58078169 TTGAATCCATGA
1 TTGAATCCATGA
58078181 AAATTTAGTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.32
Consensus pattern (13 bp):
TTGAATCCATGAC
Found at i:58079920 original size:49 final size:49
Alignment explanation
Indices: 58079864--58080227 Score: 537
Period size: 49 Copynumber: 7.6 Consensus size: 49
58079854 TATTTGAATA
* *
58079864 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
58079913 AATGTGAAAATG--TATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
58079960 AATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
58080009 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
58080058 AATGTGAAAGTG--TATATACGTGATAGGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
58080105 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * * * *
58080152 AATGTGGAAGTGTATATATATGTGACAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
58080201 GATGTGAAAGTGTATA-A-ATGTGATAAG
1 AATGTGAAAGTGTATATATATGTGATAAG
58080228 TCCCGAAGGG
Statistics
Matches: 288, Mismatches: 23, Indels: 10
0.90 0.07 0.03
Matches are distributed among these distances:
47 140 0.49
48 1 0.00
49 147 0.51
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.29
Consensus pattern (49 bp):
AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:58079942 original size:47 final size:48
Alignment explanation
Indices: 58079864--58080227 Score: 520
Period size: 47 Copynumber: 7.6 Consensus size: 48
58079854 TATTTGAATA
* *
58079864 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTG-ATATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
58079913 AATGTGAAAATG-TATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGATATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
58079960 AATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG-ATATATATGTGATAAGGCCTAATGGCCGATGTGATG
58080009 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG-ATATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
58080058 AATGTGAAAGTG-TATATACGTGATAGGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGATATATATGTGATAAGGCCTAATGGCCGATGTGATG
58080105 AATGTGAAAGTG-TATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGATATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * * * *
58080152 AATGTGGAAGTGTATATATATGTGACAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTG-ATATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
58080201 GATGTGAAAGTG-TATAAATGTGATAAG
1 AATGTGAAAGTGATATATATGTGATAAG
58080228 TCCCGAAGGG
Statistics
Matches: 287, Mismatches: 24, Indels: 10
0.89 0.07 0.03
Matches are distributed among these distances:
47 144 0.50
49 143 0.50
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.29
Consensus pattern (48 bp):
AATGTGAAAGTGATATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:58079985 original size:96 final size:96
Alignment explanation
Indices: 58079864--58080227 Score: 570
Period size: 96 Copynumber: 3.8 Consensus size: 96
58079854 TATTTGAATA
* *
58079864 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAATGTATA
1 AATGTGAAAGTGTATATATATGTGATAGGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
*
58079929 TATGTGATAAGGCCTAATAGCCGATGTGATG
66 TATGTGATAAGGCCTAATGGCCGATGTGATG
* *
58079960 AATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTGTATATATATGTGATAGGGCCGAATGGCCAATGTGATGAATGTGAAAGTG--TA
58080025 TATATGTGATAAGGCCTAATGGCCGATGTGATG
64 TATATGTGATAAGGCCTAATGGCCGATGTGATG
* * *
58080058 AATGTGAAAGTG--TATATACGTGATAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTGTATATATATGTGATAGGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
58080121 TATGTGATAAGGCCTAATGGCCGATGTGATG
66 TATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * *
58080152 AATGTGGAAGTGTATATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATA
1 AATGTGAAAGTGTATATATATGTGATAGGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
*
58080217 AATGTGATAAG
66 TATGTGATAAG
58080228 TCCCGAAGGG
Statistics
Matches: 249, Mismatches: 15, Indels: 8
0.92 0.06 0.03
Matches are distributed among these distances:
94 46 0.18
96 157 0.63
98 46 0.18
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.29
Consensus pattern (96 bp):
AATGTGAAAGTGTATATATATGTGATAGGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
TATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:58080396 original size:37 final size:37
Alignment explanation
Indices: 58080346--58080424 Score: 158
Period size: 37 Copynumber: 2.1 Consensus size: 37
58080336 CCAAGCTCTA
58080346 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
58080383 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
58080420 AAGAC
1 AAGAC
58080425 TTCGTAATAA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 42 1.00
ACGTcount: A:0.22, C:0.19, G:0.34, T:0.25
Consensus pattern (37 bp):
AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
Found at i:58084479 original size:39 final size:39
Alignment explanation
Indices: 58084425--58084696 Score: 427
Period size: 39 Copynumber: 7.0 Consensus size: 39
58084415 AAGACACTGA
58084425 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
*
58084464 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTACTGG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
* *
58084503 AAATATATCCGGGCTAAAGTCCTGCAGGCTTCGTGCTGG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
* * *
58084542 AAATATCTCCGGGCCAAAGTCCCGCAGGCTTCGTGCTGG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
* *
58084581 AAATGTATCCGGACTAAAGTCCCGCAGGCTTCATGCTGG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
*
58084620 AAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTGCTGG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
* * * *
58084659 AAATGTATCTGGGTTAAAGTCTCGCAGGCTTTGTGCTG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTG
58084697 ATAATATAAT
Statistics
Matches: 213, Mismatches: 20, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 213 1.00
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.24
Consensus pattern (39 bp):
AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
Found at i:58091593 original size:32 final size:32
Alignment explanation
Indices: 58091556--58091642 Score: 102
Period size: 32 Copynumber: 2.7 Consensus size: 32
58091546 CTTCAGTAGT
* *
58091556 GGTATTATAAGTGGCACAAAGCCATCAGTAAC
1 GGTATTATAATTGGCACAAAGCCATCAGCAAC
* ** * *
58091588 TGTATTATGTTTGGCACATAGCCATCAGCGAC
1 GGTATTATAATTGGCACAAAGCCATCAGCAAC
*
58091620 GGTAATATAATTGGCACAAAGCC
1 GGTATTATAATTGGCACAAAGCC
58091643 TTGGGTAAAT
Statistics
Matches: 43, Mismatches: 12, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
32 43 1.00
ACGTcount: A:0.33, C:0.20, G:0.22, T:0.25
Consensus pattern (32 bp):
GGTATTATAATTGGCACAAAGCCATCAGCAAC
Found at i:58092209 original size:27 final size:27
Alignment explanation
Indices: 58092138--58092201 Score: 101
Period size: 27 Copynumber: 2.4 Consensus size: 27
58092128 TTACCCTATA
*
58092138 GGGGTATTTCAATAATTTTATAAACTG
1 GGGGTATTTCAATAATTTTACAAACTG
* *
58092165 AGGGTATTTCAATAATTTTACAAGCTG
1 GGGGTATTTCAATAATTTTACAAACTG
58092192 GGGGTATTTC
1 GGGGTATTTC
58092202 GGTAATTTCT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.30, C:0.09, G:0.22, T:0.39
Consensus pattern (27 bp):
GGGGTATTTCAATAATTTTACAAACTG
Found at i:58093434 original size:27 final size:27
Alignment explanation
Indices: 58093396--58093484 Score: 99
Period size: 27 Copynumber: 3.3 Consensus size: 27
58093386 CAAAAAAGTC
* * *
58093396 ATTTTACCCTACAGGGGTATTTCGATA
1 ATTTTACACTACAGGGGTATTTTGGTA
* *
58093423 ATTTTACACTACAAGGGTGTTTTGGTA
1 ATTTTACACTACAGGGGTATTTTGGTA
* *
58093450 ATTTTACA-AACTGGGGGTATTTTGGTA
1 ATTTTACACTAC-AGGGGTATTTTGGTA
58093477 ATTTTACA
1 ATTTTACA
58093485 AACTGAGGTA
Statistics
Matches: 52, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
26 2 0.04
27 50 0.96
ACGTcount: A:0.27, C:0.12, G:0.20, T:0.40
Consensus pattern (27 bp):
ATTTTACACTACAGGGGTATTTTGGTA
Found at i:58102483 original size:30 final size:30
Alignment explanation
Indices: 58102449--58102510 Score: 124
Period size: 30 Copynumber: 2.1 Consensus size: 30
58102439 TTTTAAATGA
58102449 TGGTTGATTAAGTATGAAATGCTAAGTAAT
1 TGGTTGATTAAGTATGAAATGCTAAGTAAT
58102479 TGGTTGATTAAGTATGAAATGCTAAGTAAT
1 TGGTTGATTAAGTATGAAATGCTAAGTAAT
58102509 TG
1 TG
58102511 TATTTGAATG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.35, C:0.03, G:0.24, T:0.37
Consensus pattern (30 bp):
TGGTTGATTAAGTATGAAATGCTAAGTAAT
Found at i:58103666 original size:15 final size:15
Alignment explanation
Indices: 58103646--58103693 Score: 53
Period size: 15 Copynumber: 3.3 Consensus size: 15
58103636 TCAAAGGTGG
58103646 GTTTATGGATATGAA
1 GTTTATGGATATGAA
* * *
58103661 GTTTATGTAGATGGA
1 GTTTATGGATATGAA
*
58103676 -TTTATGGATATAAA
1 GTTTATGGATATGAA
58103690 GTTT
1 GTTT
58103694 TTGTAGGTTT
Statistics
Matches: 25, Mismatches: 7, Indels: 2
0.74 0.21 0.06
Matches are distributed among these distances:
14 10 0.40
15 15 0.60
ACGTcount: A:0.31, C:0.00, G:0.25, T:0.44
Consensus pattern (15 bp):
GTTTATGGATATGAA
Found at i:58110452 original size:48 final size:48
Alignment explanation
Indices: 58110394--58110634 Score: 430
Period size: 48 Copynumber: 5.0 Consensus size: 48
58110384 ATATACACAC
* * *
58110394 ATCTCCTACATATTTCACACTAGCCCTTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
58110442 ATCTCATACATATTTCACATTAGCTATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
58110490 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
58110538 ATCTCATACATATTTCACATTAGCCATTCAGCTTTACCACA-ATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
58110585 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
58110633 AT
1 AT
58110635 ATTTATCTTG
Statistics
Matches: 185, Mismatches: 7, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
47 46 0.25
48 139 0.75
ACGTcount: A:0.31, C:0.28, G:0.06, T:0.35
Consensus pattern (48 bp):
ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
Found at i:58121176 original size:444 final size:443
Alignment explanation
Indices: 58120339--58121237 Score: 1753
Period size: 444 Copynumber: 2.0 Consensus size: 443
58120329 TTTACAACAC
58120339 CAACTAAGTTTTCCAACTAAGTAACACGGAATGTTTTGAACGCTTCGATGTGGCGCATCAGATCC
1 CAAC-AAG-TTTCCAACTAAGTAACACGGAATGTTTTGAACGCTTCGATGTGGCGCATCAGATCC
58120404 GGTCATAACGTCTAGGCCGGGTTTGGGGTGTTACATTGGTCGCACAAAATTTGGAATGCTTTAAT
64 GGTCATAACGTCTAGGCCGGGTTTGGGGTGTTACATTGGTCGCACAAAATTTGGAATGCTTTAAT
58120469 TTTCACATATCGAACCAAAATAGCAATTTCTAGGTTTAAACACATAAGTTTGTTCACTTGCTAGA
129 TTTCACATATCGAACCAAAATAGCAATTTCTAGGTTTAAACACATAAGTTTGTTCACTTGCTAGA
58120534 AAATGCAACAAAGGTTTCATGCGTGTCATGATTTCAAACATGCTGATCCAAAAGAATTTGTGCAT
194 AAATGCAACAAAGGTTTCATGCGTGTCATGATTTCAAACATGCTGATCCAAAAGAATTTGTGCAT
58120599 ATACAAAAACAAATAATCCAAACTCCTTACATTCATCAGGACAAATGGGCATAAATTTAAAGATT
259 ATACAAAAACAAATAATCCAAACTCCTTACATTCATCAGGACAAATGGGCATAAATTTAAAGATT
58120664 TTGCACAAGGCAGTAGTTGATTCACATAATCACCACAATCAAACAACTTAAATGTCTTTCGTGAA
324 TTGCACAAGGCAGTAGTTGATTCACATAATCACCACAATCAAACAACTTAAATGTCTTTCGTGAA
*
58120729 GAATCGTTACCATGTAAGATGATATTATGTTCTTGCCGATTTAATCGGACGTCAT
389 GAATCGTTACCATGTAAGATGATATTATGTGCTTGCCGATTTAATCGGACGTCAT
58120784 CAACAAGTTTCCAACTAAGTAACACGGAATGTTTTGAACGCTTCGATGTGGCGCATCAGATCCGG
1 CAACAAGTTTCCAACTAAGTAACACGGAATGTTTTGAACGCTTCGATGTGGCGCATCAGATCCGG
58120849 TCATAACGTCTAGGCCGGGTTTGGGGTGTTACATTGGTCGCACAAAATTTGGAATGCTTTAATTT
66 TCATAACGTCTAGGCCGGGTTTGGGGTGTTACATTGGTCGCACAAAATTTGGAATGCTTTAA-TT
58120914 TTCACATATCGAACCAAAATAGCAATTTCTAGGTTTAAACACATAAGTTTGTTCACTTGCTAGAA
130 TTCACATATCGAACCAAAATAGCAATTTCTAGGTTTAAACACATAAGTTTGTTCACTTGCTAGAA
*
58120979 AATGCAACAAAGGTTTCATGCGTGTCATGATTTCAATCATGCTGATCCAAAAGAATTTGTGCATA
195 AATGCAACAAAGGTTTCATGCGTGTCATGATTTCAAACATGCTGATCCAAAAGAATTTGTGCATA
58121044 TACAAAAACAAATAATCCAAACTCCTTACATTCATCAGGACAAATGGGCATAAATTTAAAGATTT
260 TACAAAAACAAATAATCCAAACTCCTTACATTCATCAGGACAAATGGGCATAAATTTAAAGATTT
58121109 TGCACAAGGCAGTAGTTGATTCACATAATCACCACAATCAAACAACTTAAATGTCTTTCGTGAAG
325 TGCACAAGGCAGTAGTTGATTCACATAATCACCACAATCAAACAACTTAAATGTCTTTCGTGAAG
58121174 AATCGTTACCATGTAAGATGATATTATGTGCTTGCCGATTTAATCGGACGTCAT
390 AATCGTTACCATGTAAGATGATATTATGTGCTTGCCGATTTAATCGGACGTCAT
58121228 CAACAAGTTT
1 CAACAAGTTT
58121238 TACACCACAA
Statistics
Matches: 451, Mismatches: 2, Indels: 3
0.99 0.00 0.01
Matches are distributed among these distances:
443 120 0.27
444 327 0.73
445 4 0.01
ACGTcount: A:0.34, C:0.19, G:0.18, T:0.30
Consensus pattern (443 bp):
CAACAAGTTTCCAACTAAGTAACACGGAATGTTTTGAACGCTTCGATGTGGCGCATCAGATCCGG
TCATAACGTCTAGGCCGGGTTTGGGGTGTTACATTGGTCGCACAAAATTTGGAATGCTTTAATTT
TCACATATCGAACCAAAATAGCAATTTCTAGGTTTAAACACATAAGTTTGTTCACTTGCTAGAAA
ATGCAACAAAGGTTTCATGCGTGTCATGATTTCAAACATGCTGATCCAAAAGAATTTGTGCATAT
ACAAAAACAAATAATCCAAACTCCTTACATTCATCAGGACAAATGGGCATAAATTTAAAGATTTT
GCACAAGGCAGTAGTTGATTCACATAATCACCACAATCAAACAACTTAAATGTCTTTCGTGAAGA
ATCGTTACCATGTAAGATGATATTATGTGCTTGCCGATTTAATCGGACGTCAT
Found at i:58121721 original size:30 final size:28
Alignment explanation
Indices: 58121668--58121723 Score: 76
Period size: 30 Copynumber: 1.9 Consensus size: 28
58121658 TTCTTCCACG
* *
58121668 CTTTCTTTTTGCTCACTCTCTTTTTCAA
1 CTTTCTTTTTGCACACACTCTTTTTCAA
58121696 CTTTACTTTCTTGCACACACTCTTTTTC
1 CTTT-CTTT-TTGCACACACTCTTTTTC
58121724 TTTTTCGCTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 4 0.17
29 4 0.17
30 16 0.67
ACGTcount: A:0.12, C:0.30, G:0.04, T:0.54
Consensus pattern (28 bp):
CTTTCTTTTTGCACACACTCTTTTTCAA
Found at i:58121835 original size:12 final size:12
Alignment explanation
Indices: 58121818--58121851 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
58121808 TGTTCTTTTT
*
58121818 CTTTTTCAATGG
1 CTTTTTCAATGA
58121830 CTTTTTCAATGA
1 CTTTTTCAATGA
*
58121842 CTTTCTCAAT
1 CTTTTTCAAT
58121852 CTCTTTCAAG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.21, C:0.21, G:0.09, T:0.50
Consensus pattern (12 bp):
CTTTTTCAATGA
Found at i:58122916 original size:15 final size:15
Alignment explanation
Indices: 58122896--58122943 Score: 53
Period size: 15 Copynumber: 3.3 Consensus size: 15
58122886 TCAAAGGTGG
58122896 GTTTATGGATATGAA
1 GTTTATGGATATGAA
* * *
58122911 GTTTATGTAGATGGA
1 GTTTATGGATATGAA
*
58122926 -TTTATGGATATAAA
1 GTTTATGGATATGAA
58122940 GTTT
1 GTTT
58122944 TTGTAGGTTT
Statistics
Matches: 25, Mismatches: 7, Indels: 2
0.74 0.21 0.06
Matches are distributed among these distances:
14 10 0.40
15 15 0.60
ACGTcount: A:0.31, C:0.00, G:0.25, T:0.44
Consensus pattern (15 bp):
GTTTATGGATATGAA
Found at i:58127231 original size:17 final size:17
Alignment explanation
Indices: 58127211--58127246 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
58127201 TAAGCTTGTA
58127211 TAGTTAATAAGAAAACT
1 TAGTTAATAAGAAAACT
58127228 TAGTTAATAAGAAAACT
1 TAGTTAATAAGAAAACT
58127245 TA
1 TA
58127247 CCATTAATTC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.53, C:0.06, G:0.11, T:0.31
Consensus pattern (17 bp):
TAGTTAATAAGAAAACT
Found at i:58129640 original size:27 final size:27
Alignment explanation
Indices: 58129570--58129648 Score: 79
Period size: 27 Copynumber: 2.9 Consensus size: 27
58129560 ATGACATCAA
* * *
58129570 GGATAATCTAACAGGACGTTAAACATG
1 GGATACTCTAAGAGGACGTTAAACACG
* *
58129597 GGATACTTTGAGAGGACGTTAAACACG
1 GGATACTCTAAGAGGACGTTAAACACG
* *
58129624 GGATAGTCTAATG-GGACATTAAACA
1 GGATACTCTAA-GAGGACGTTAAACA
58129649 GAAGATAGTC
Statistics
Matches: 42, Mismatches: 9, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
27 41 0.98
28 1 0.02
ACGTcount: A:0.38, C:0.14, G:0.25, T:0.23
Consensus pattern (27 bp):
GGATACTCTAAGAGGACGTTAAACACG
Found at i:58130730 original size:25 final size:25
Alignment explanation
Indices: 58130702--58130777 Score: 82
Period size: 26 Copynumber: 3.0 Consensus size: 25
58130692 TCATCCCTAT
58130702 TTTACCCTAGTAAAATTTTGATGAA
1 TTTACCCTAGTAAAATTTTGATGAA
* * *
58130727 TTTACCTTTAGTAAAATTTTGACGAT
1 TTTACC-CTAGTAAAATTTTGATGAA
* *
58130753 TTTGCCCCTGGTAAAATTTTG-TGAA
1 TTT-ACCCTAGTAAAATTTTGATGAA
58130778 AATGTGTTCC
Statistics
Matches: 41, Mismatches: 8, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
25 8 0.20
26 31 0.76
27 2 0.05
ACGTcount: A:0.30, C:0.13, G:0.14, T:0.42
Consensus pattern (25 bp):
TTTACCCTAGTAAAATTTTGATGAA
Found at i:58132736 original size:49 final size:48
Alignment explanation
Indices: 58132675--58132839 Score: 138
Period size: 49 Copynumber: 3.4 Consensus size: 48
58132665 GTTAGTGTAG
* *
58132675 GACCTGTATGGGACATGGCATCGACACTGATAGATGAGAGCCAGTGAAA
1 GACCTGTCTGGGACATGGCATCGAC-CTGATAGATGAAAGCCAGTGAAA
* * *
58132724 GACCTGTCTGGGACATGGCATCGGCCTCGATATATGAAAGTCAGT-ATAA
1 GACCTGTCTGGGACATGGCATCGACCT-GATAGATGAAAGCCAGTGA-AA
* * * * * * ** *
58132773 GACTTGTCTGTGACACGACATCGACTTTA-ATG-TGTTAGCCAGTGTAA
1 GACCTGTCTGGGACATGGCATCGACCTGATA-GATGAAAGCCAGTGAAA
58132820 GACCATGTCTGGGACATGGC
1 GACC-TGTCTGGGACATGGC
58132840 GTCAGCATTT
Statistics
Matches: 90, Mismatches: 21, Indels: 11
0.74 0.17 0.09
Matches are distributed among these distances:
47 14 0.16
48 16 0.18
49 60 0.67
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (48 bp):
GACCTGTCTGGGACATGGCATCGACCTGATAGATGAAAGCCAGTGAAA
Found at i:58140032 original size:46 final size:46
Alignment explanation
Indices: 58139980--58140141 Score: 152
Period size: 46 Copynumber: 3.5 Consensus size: 46
58139970 TGTGAGCCAA
*
58139980 TGTAAGACATGTCTGGGACATGCATTGGCCACATT-ATGAGTGCTAG
1 TGTAAGACATGTCTGGGACATGCATTGGCC-CATTGATGAGAGCTAG
* * * *
58140026 TGTAAGACGTGTTTGGGACAGGCATCGG--CATTGAGATGAGAGCTAG
1 TGTAAGACATGTCTGGGACATGCATTGGCCCATT--GATGAGAGCTAG
** * *
58140072 TGTAAGACATGTCTGGGACATGCATTGGCCTC-GGGATAAACAAGCTAG
1 TGTAAGACATGTCTGGGACATGCATTGGCC-CATTGAT-GA-GAGCTAG
*
58140120 TGTAAGACCTGTCTGGGACATG
1 TGTAAGACATGTCTGGGACATG
58140142 GCATCGATAT
Statistics
Matches: 94, Mismatches: 14, Indels: 14
0.77 0.11 0.11
Matches are distributed among these distances:
43 4 0.04
46 61 0.65
47 1 0.01
48 27 0.29
49 1 0.01
ACGTcount: A:0.27, C:0.17, G:0.31, T:0.25
Consensus pattern (46 bp):
TGTAAGACATGTCTGGGACATGCATTGGCCCATTGATGAGAGCTAG
Found at i:58141315 original size:28 final size:28
Alignment explanation
Indices: 58141275--58141329 Score: 85
Period size: 29 Copynumber: 1.9 Consensus size: 28
58141265 ACACGGGCTA
58141275 GGACACGG-GTGTGTCATGGCTGTGTGAG
1 GGACACGGAGTGTGTCA-GGCTGTGTGAG
58141303 GGACACGGATGTGTGTCAGGCTGTGTG
1 GGACACGGA-GTGTGTCAGGCTGTGTG
58141330 GAAATCCCTG
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
28 8 0.32
29 9 0.36
30 8 0.32
ACGTcount: A:0.15, C:0.15, G:0.45, T:0.25
Consensus pattern (28 bp):
GGACACGGAGTGTGTCAGGCTGTGTGAG
Found at i:58141946 original size:43 final size:43
Alignment explanation
Indices: 58141813--58141978 Score: 160
Period size: 43 Copynumber: 3.9 Consensus size: 43
58141803 TAGCTCGTAC
* * * *
58141813 AATGCC-ATATCCCAGATATGGTCTTACATGTTATCAC-ATAT
1 AATGCCAATGTCCCAGACATGGTCTTACACGTAATCACAATAT
* * * * *
58141854 CAATGCCACTGTCCCAGACA-GAGTCTTATACGAAATC-GATTAAT
1 -AATGCCAATGTCCCAGACATG-GTCTTACACGTAATCACAAT-AT
*
58141898 GATGCCAATGTCCCAGACATGGTCTTACACGTAATCACAATAT
1 AATGCCAATGTCCCAGACATGGTCTTACACGTAATCACAATAT
* * *
58141941 AATGCCAATGTTCCAAACATGGTCTTACATGTAATCAC
1 AATGCCAATGTCCCAGACATGGTCTTACACGTAATCAC
58141979 TTCTCAATAA
Statistics
Matches: 99, Mismatches: 19, Indels: 11
0.77 0.15 0.09
Matches are distributed among these distances:
42 7 0.07
43 87 0.88
44 5 0.05
ACGTcount: A:0.33, C:0.24, G:0.14, T:0.28
Consensus pattern (43 bp):
AATGCCAATGTCCCAGACATGGTCTTACACGTAATCACAATAT
Found at i:58144434 original size:24 final size:24
Alignment explanation
Indices: 58144402--58144449 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
58144392 CTTTGGATCA
58144402 AGGAGTCAGTTTTTGCCATGTATG
1 AGGAGTCAGTTTTTGCCATGTATG
58144426 AGGAGTCAGTTTTTGCCATGTATG
1 AGGAGTCAGTTTTTGCCATGTATG
58144450 CTTTCAACAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.21, C:0.12, G:0.29, T:0.38
Consensus pattern (24 bp):
AGGAGTCAGTTTTTGCCATGTATG
Found at i:58145737 original size:16 final size:17
Alignment explanation
Indices: 58145712--58145746 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
58145702 GAGAGAGAGA
58145712 TGTGTGGAATGAA-AGG
1 TGTGTGGAATGAATAGG
*
58145728 TGTGTTGAATGAATAGG
1 TGTGTGGAATGAATAGG
58145745 TG
1 TG
58145747 AAAGGGGAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 12 0.71
17 5 0.29
ACGTcount: A:0.29, C:0.00, G:0.40, T:0.31
Consensus pattern (17 bp):
TGTGTGGAATGAATAGG
Found at i:58147666 original size:68 final size:65
Alignment explanation
Indices: 58147454--58147710 Score: 183
Period size: 68 Copynumber: 3.9 Consensus size: 65
58147444 TATTGTTCGA
*
58147454 CTCTCTTGTAC-ACATGGTGAACACTCAGTATCACCCATGTGACCTAGCCA-AT--T-TATCTCG
1 CTCTCTTGT-CTACATGGTGTACACT-AGTATCACCCATGTGACCTAG-CATATCATATATCTCG
58147514 TAG
63 TAG
* * * * ** * *
58147517 CTCTCTTGTCTACATGGTGTCTTCACCTGGAACCATGCATGCGACCTAGC-TA-CATATATCACG
1 CTCTCTTGTCTACATGGTG--TACA-CTAGTATCACCCATGTGACCTAGCATATCATATATCTCG
58147580 TAG
63 TAG
* *
58147583 CTCTCTTGTCTACATGGTGTACACATAGTATCACCCATGTGACCTAGCTATATCATAATGTCTTG
1 CTCTCTTGTCTACATGGTGTACAC-TAGTATCACCCATGTGACCTAGC-ATATCAT-ATATCTCG
58147648 TAG
63 TAG
* * * * **
58147651 CTCTCTTGTAC-ACATGATGTGCACTCAGCACCATACATGTGACCTAGC-TA-CATACTATCT
1 CTCTCTTGT-CTACATGGTGTACACT-AGTATCACCCATGTGACCTAGCATATCATA-TATCT
58147711 GTATCATCCA
Statistics
Matches: 152, Mismatches: 26, Indels: 30
0.73 0.12 0.14
Matches are distributed among these distances:
62 1 0.01
63 18 0.12
64 23 0.15
65 25 0.16
66 34 0.22
67 4 0.03
68 46 0.30
69 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.16, T:0.32
Consensus pattern (65 bp):
CTCTCTTGTCTACATGGTGTACACTAGTATCACCCATGTGACCTAGCATATCATATATCTCGTAG
Found at i:58148405 original size:30 final size:30
Alignment explanation
Indices: 58148370--58148430 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
58148360 TCCTTAACTC
*
58148370 AAACTTTGGCAAAATTATAATTTTGCCCCT
1 AAACTTTGGCAAAATTACAATTTTGCCCCT
* * * *
58148400 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGCAAAATTACAATTTTGCCCCT
58148430 A
1 A
58148431 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.30, C:0.23, G:0.08, T:0.39
Consensus pattern (30 bp):
AAACTTTGGCAAAATTACAATTTTGCCCCT
Found at i:58150547 original size:24 final size:24
Alignment explanation
Indices: 58150506--58150577 Score: 67
Period size: 25 Copynumber: 3.0 Consensus size: 24
58150496 GCTTTATCAC
**
58150506 ATAACTGGAGGCCTAGCCTCTTTTA
1 ATAACTGGAGGCAAAGCC-CTTTTA
*
58150531 ATAACT-GAGGCAAAGCCCTTTTCG
1 ATAACTGGAGGCAAAGCCCTTTT-A
*
58150555 ATAAACTGG-GGCAAAACCCTTTT
1 AT-AACTGGAGGCAAAGCCCTTTT
58150578 TGGTAAACTA
Statistics
Matches: 40, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
23 5 0.12
24 11 0.28
25 23 0.57
26 1 0.03
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.28
Consensus pattern (24 bp):
ATAACTGGAGGCAAAGCCCTTTTA
Found at i:58150561 original size:25 final size:25
Alignment explanation
Indices: 58150533--58150602 Score: 88
Period size: 25 Copynumber: 2.8 Consensus size: 25
58150523 CTCTTTTAAT
58150533 AACTGAGGCAAAGCCCTTTTCGATA
1 AACTGAGGCAAAGCCCTTTTCGATA
* * * *
58150558 AACTGGGGCAAAACCCTTTTTGGTA
1 AACTGAGGCAAAGCCCTTTTCGATA
58150583 AACT-AGGGCAAAGCCCTTTT
1 AACTGA-GGCAAAGCCCTTTT
58150603 GCACTTCCTC
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
25 38 1.00
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (25 bp):
AACTGAGGCAAAGCCCTTTTCGATA
Found at i:58157019 original size:30 final size:31
Alignment explanation
Indices: 58156945--58157029 Score: 120
Period size: 30 Copynumber: 2.8 Consensus size: 31
58156935 TCAATCTCAA
58156945 CATAT-ACTGGGCCGAAGCCTTTGCATTATT
1 CATATCACTGGGCCGAAGCCTTTGCATTATT
* * *
58156975 CATGTCACTGGGCCGAACCCTTTTCATTA-T
1 CATATCACTGGGCCGAAGCCTTTGCATTATT
*
58157005 CATATCACTAGGCCGAAGCCTTTGC
1 CATATCACTGGGCCGAAGCCTTTGC
58157030 TGTAAATGGT
Statistics
Matches: 47, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
30 26 0.55
31 21 0.45
ACGTcount: A:0.22, C:0.28, G:0.19, T:0.31
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTGCATTATT
Found at i:58172546 original size:40 final size:40
Alignment explanation
Indices: 58172516--58172725 Score: 305
Period size: 40 Copynumber: 5.3 Consensus size: 40
58172506 GGACTAAGAT
* * * **
58172516 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
*
58172556 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGCC
1 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
58172596 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
58172636 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
* ** * * *
58172676 CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
58172715 CCGAAGGCATT
1 CCGAAGGCATT
58172726 TGAACGAGGA
Statistics
Matches: 157, Mismatches: 13, Indels: 1
0.92 0.08 0.01
Matches are distributed among these distances:
39 33 0.21
40 124 0.79
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
Found at i:58180542 original size:39 final size:40
Alignment explanation
Indices: 58180449--58180657 Score: 305
Period size: 40 Copynumber: 5.3 Consensus size: 40
58180439 GGACTAAGAT
* * * **
58180449 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
58180489 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAG-C
1 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
58180528 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
58180568 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
* ** * * *
58180608 CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
58180647 CCGAAGGCATT
1 CCGAAGGCATT
58180658 TGAACGAGGA
Statistics
Matches: 157, Mismatches: 11, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
39 72 0.46
40 85 0.54
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
Found at i:58180678 original size:79 final size:79
Alignment explanation
Indices: 58180449--58180657 Score: 321
Period size: 79 Copynumber: 2.6 Consensus size: 79
58180439 GGACTAAGAT
* *
58180449 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTA
1 CCGAAGG-CATTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTA
58180514 AATCCGGGTTAAG-C
65 AATCCGGGTTAAGTC
**
58180528 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTA
1 CCGAAGGCATT-GTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTA
58180593 AATCCGGGTTAAGTC
65 AATCCGGGTTAAGTC
* * * *
58180608 CCGAAGGCATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 CCGAAGGCATTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATT
58180658 TGAACGAGGA
Statistics
Matches: 118, Mismatches: 10, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
78 3 0.03
79 103 0.87
80 12 0.10
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
ATCCGGGTTAAGTC
Found at i:58188615 original size:40 final size:40
Alignment explanation
Indices: 58188560--58188721 Score: 265
Period size: 40 Copynumber: 4.0 Consensus size: 40
58188550 CGATTGATAC
58188560 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
58188600 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATCA-
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT-AT
*
58188640 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
58188680 CCGGGCTAAGTCCCGAAGGCATTTGAGCTAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
58188720 CC
1 CC
58188722 AGCTAAACTC
Statistics
Matches: 116, Mismatches: 3, Indels: 6
0.93 0.02 0.05
Matches are distributed among these distances:
39 3 0.03
40 112 0.97
41 1 0.01
ACGTcount: A:0.23, C:0.24, G:0.27, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:58202602 original size:40 final size:40
Alignment explanation
Indices: 58202572--58202820 Score: 385
Period size: 40 Copynumber: 6.3 Consensus size: 40
58202562 GGACTAAGAT
* * * **
58202572 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
58202612 CCGAAGGCATTCGTGCGAGTT-TTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
58202651 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
58202691 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
58202731 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
* ** * * *
58202771 CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
58202810 CCGAAGGCATT
1 CCGAAGGCATT
58202821 TGAACGAGGA
Statistics
Matches: 198, Mismatches: 10, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
39 71 0.36
40 127 0.64
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.27
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
Found at i:58202668 original size:79 final size:80
Alignment explanation
Indices: 58202519--58202820 Score: 387
Period size: 79 Copynumber: 3.8 Consensus size: 80
58202509 TTGAATGCTG
* * * * * * ** *
58202519 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGACTAAGAT-CCGAAGGCCT
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAATCCGGGTTAAG-TCCCGAAGGCAT
* * **
58202582 TTGTGCGAGATACTAAA
64 TCGTGCGAGTTGTTAAA
58202599 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTC
58202663 GTGCGAGTTGTTAAA
66 GTGCGAGTTGTTAAA
*
58202678 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTC
58202743 GTGCGAGTTGTTAAA
66 GTGCGAGTTGTTAAA
* * * * *
58202758 TCCGGGTTAAGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATT
58202821 TGAACGAGGA
Statistics
Matches: 200, Mismatches: 19, Indels: 7
0.88 0.08 0.03
Matches are distributed among these distances:
78 1 0.00
79 101 0.50
80 92 0.46
81 6 0.03
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.26
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTC
GTGCGAGTTGTTAAA
Found at i:58202730 original size:119 final size:119
Alignment explanation
Indices: 58202519--58202820 Score: 392
Period size: 119 Copynumber: 2.5 Consensus size: 119
58202509 TTGAATGCTG
* * * * * * * * *
58202519 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATATATCCGGACTAAGAT-CCGAAGGCCTT
1 TCCGGGTTAAGTCCCGAAGGCATTGTGC-GAGTTACTAAAACCGGGCTAAG-TCCCGAAGGCATT
*
58202583 TGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAAA
64 CGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
** * *
58202638 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTC
* **
58202703 GTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
65 GTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
* *
58202758 TCCGGGTTAAGTCCCGAAGGCATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
58202821 TGAACGAGGA
Statistics
Matches: 160, Mismatches: 20, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
118 1 0.01
119 126 0.79
120 33 0.21
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.26
Consensus pattern (119 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTCG
TGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
Found at i:58202840 original size:119 final size:119
Alignment explanation
Indices: 58202594--58202855 Score: 375
Period size: 119 Copynumber: 2.2 Consensus size: 119
58202584 GTGCGAGATA
58202594 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTTTAAATCCGGGTTAAGTCCCGAAGGC
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTTTAAATCCGGGTTAAGTCCCGAAGGC
** * * ** **
58202659 ATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTG
66 ATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAG
*
58202713 TTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAAATCCGGGTTAAGTCCCGAAGG
* * *
58202778 CATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTTGAACGAGGAG
65 CATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAG
* *
58202832 CTATATCC-GGTTAAATCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGG
58202856 TACGTGATTT
Statistics
Matches: 127, Mismatches: 15, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
118 15 0.12
119 83 0.65
120 29 0.23
ACGTcount: A:0.25, C:0.21, G:0.29, T:0.26
Consensus pattern (119 bp):
CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTTTAAATCCGGGTTAAGTCCCGAAGGC
ATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAG
Found at i:58210619 original size:39 final size:40
Alignment explanation
Indices: 58210543--58210789 Score: 367
Period size: 39 Copynumber: 6.3 Consensus size: 40
58210533 GGACTAAGAT
* * * **
58210543 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
58210583 CCGAAGGCATTCGTGCGAGTT-TTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
58210622 CCGAAGGCATTCGTGCGAGTT-TTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
58210661 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
58210701 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTT-AGTC
1 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
* ** * * *
58210740 CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
58210779 CCGAAGGCATT
1 CCGAAGGCATT
58210790 TGAACGAGGA
Statistics
Matches: 195, Mismatches: 10, Indels: 5
0.93 0.05 0.02
Matches are distributed among these distances:
38 18 0.09
39 106 0.54
40 71 0.36
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.27
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
Found at i:58210699 original size:118 final size:118
Alignment explanation
Indices: 58210543--58210789 Score: 372
Period size: 118 Copynumber: 2.1 Consensus size: 118
58210533 GGACTAAGAT
* *
58210543 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTA
1 CCGAAGGCATTCGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTA
* * *
58210607 AATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAAATCCGGGTTAAGTC
66 AATCCGGGTT-AGTCCCGAAGGCATT-GTGCGAGTTACTAAAACCGGGCTAAGTC
* **
58210661 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTA
1 CCGAAGGCATTCGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTA
* *
58210726 AATCCGGGTTAGTCCCGAAGGCATTGTGTGAGTTACTAAAACCGGGCTATGTC
66 AATCCGGGTTAGTCCCGAAGGCATTGTGCGAGTTACTAAAACCGGGCTAAGTC
58210779 CCGAAGGCATT
1 CCGAAGGCATT
58210790 TGAACGAGGA
Statistics
Matches: 117, Mismatches: 10, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
117 8 0.07
118 96 0.82
119 13 0.11
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.27
Consensus pattern (118 bp):
CCGAAGGCATTCGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTA
AATCCGGGTTAGTCCCGAAGGCATTGTGCGAGTTACTAAAACCGGGCTAAGTC
Found at i:58210809 original size:78 final size:79
Alignment explanation
Indices: 58210543--58210824 Score: 347
Period size: 78 Copynumber: 3.6 Consensus size: 79
58210533 GGACTAAGAT
* * * **
58210543 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTTTAA
1 CCGAAGGCATTCGTGCGAGGTGTTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTTTAA
58210608 ATCCGGGTTAAGTC
66 ATCCGGGTTAAGTC
*
58210622 CCGAAGGCATTCGTGCGA-GTTTTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTA
1 CCGAAGGCATTCGTGCGAGGTGTTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTA
58210686 AATCCGGGTTAAGTC
65 AATCCGGGTTAAGTC
* * *
58210701 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTT-AGTCCCGAAGGCATT-GTGTGAGTTACTA
1 CCGAAGGCATTCGTGCGAGGTGTTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTA
* * *
58210764 AAACCGGGCTATGTC
65 AATCCGGGTTAAGTC
* ** * * * *
58210779 CCGAAGGCATTTGAACGAGGAGCTATATCC-GGTTAAATCCCGAAGG
1 CCGAAGGCATTCGTGCGAGGTGTTAAATCCGGGTTAAGTCCCGAAGG
58210825 TACGTGATTT
Statistics
Matches: 179, Mismatches: 21, Indels: 7
0.86 0.10 0.03
Matches are distributed among these distances:
77 4 0.02
78 94 0.53
79 67 0.37
80 14 0.08
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTCGTGCGAGGTGTTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTTTAA
ATCCGGGTTAAGTC
Found at i:58210809 original size:118 final size:118
Alignment explanation
Indices: 58210565--58210824 Score: 364
Period size: 118 Copynumber: 2.2 Consensus size: 118
58210555 GTGCGAGATA
58210565 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTTTAAATCCGGGTTAAGTCCCGAAGGC
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTTTAAATCCGGGTTAAGTCCCGAAGGC
* * * ** **
58210630 ATTCGTGCGAGTTTTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTG
66 ATTCGTGCGAGTTCTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAG
*
58210683 TTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTT-AGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAAATCCGGGTTAAGTCCCGAAGG
* * *
58210747 CATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTTGAACGAGGAG
65 CATTCGTGCGAGTT-CTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAG
* *
58210801 CTATATCC-GGTTAAATCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGG
58210825 TACGTGATTT
Statistics
Matches: 126, Mismatches: 14, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
117 23 0.18
118 90 0.71
119 13 0.10
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (118 bp):
CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTTTAAATCCGGGTTAAGTCCCGAAGGC
ATTCGTGCGAGTTCTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAG
Found at i:58220119 original size:21 final size:21
Alignment explanation
Indices: 58220093--58220143 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
58220083 CATGTCATTT
*
58220093 ACTATTCATAATGGTAATATG
1 ACTATTCATAATAGTAATATG
* **
58220114 ACTATTCTTCCTAGTAATATG
1 ACTATTCATAATAGTAATATG
58220135 ACTATTCAT
1 ACTATTCAT
58220144 CCTGGTAGTA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.33, C:0.16, G:0.10, T:0.41
Consensus pattern (21 bp):
ACTATTCATAATAGTAATATG
Found at i:58220146 original size:21 final size:21
Alignment explanation
Indices: 58220106--58220146 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
58220096 ATTCATAATG
*
58220106 GTAATATGACTATTCTTCCTA
1 GTAATATGACTATTCATCCTA
58220127 GTAATATGACTATTCATCCT
1 GTAATATGACTATTCATCCT
58220147 GGTAGTAATA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.29, C:0.20, G:0.10, T:0.41
Consensus pattern (21 bp):
GTAATATGACTATTCATCCTA
Found at i:58262846 original size:48 final size:47
Alignment explanation
Indices: 58262748--58263021 Score: 198
Period size: 48 Copynumber: 5.7 Consensus size: 47
58262738 TATGGGAGTC
* * * *
58262748 AGTGTAAGACCATGTTTGGAACATGGCATTGGTGATGTTG-T-GAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGG-CA--TTGATAGAGAGCT
* * *
58262796 AGTGTATGACCATGTTTGGGACATGGCATCGGCATTGATATATGCA-CT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGATAGA-G-AGCT
* * * *
58262844 AGTGTAAGACCATGACTAGGACATGGCATTGGGCACATT-AT-GAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCA-TCGG--CATTGATAGAGAGCT
* * ** *
58262892 GGTGTATGACCATGTCTGGGACATGGCATCAACATTGAGACGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGATA-GAGAGCT
* * * * * * *
58262940 AGTGTAAGACCATGTCTGGGACAGGGCATCAGCCTCGACATGTGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGATA-GAGAGCT
* *
58262988 AGTGTAAGACCATGTTTGGAACATGGCATCGGCA
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCA
58263022 ATTCACCCTC
Statistics
Matches: 179, Mismatches: 36, Indels: 22
0.76 0.15 0.09
Matches are distributed among these distances:
45 7 0.04
46 2 0.01
47 4 0.02
48 155 0.87
49 5 0.03
50 2 0.01
51 4 0.02
ACGTcount: A:0.27, C:0.18, G:0.30, T:0.25
Consensus pattern (47 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGATAGAGAGCT
Found at i:58262871 original size:96 final size:96
Alignment explanation
Indices: 58262748--58263021 Score: 245
Period size: 96 Copynumber: 2.9 Consensus size: 96
58262738 TATGGGAGTC
* * ** * * *
58262748 AGTGTAAGACCATGTTTGGAACATGGCATTGGTG-ATGTTGTGAGAGCTAGTGTATGACCATGTT
1 AGTGTAAGACCATGCTAGGAACATGGCATTGG-GCACATTATGAGAGCCAGTGTATGACCATGTC
58262812 TGGGACATGGCATCGGCATTGATATATGCACT
65 TGGGACATGGCATCGGCATTGATATATGCACT
*
58262844 AGTGTAAGACCATGACTAGG-ACATGGCATTGGGCACATTATGAGAGCCGGTGTATGACCATGTC
1 AGTGTAAGACCATG-CTAGGAACATGGCATTGGGCACATTATGAGAGCCAGTGTATGACCATGTC
** * *
58262908 TGGGACATGGCATCAACATTGAGACGA-G-AGCT
65 TGGGACATGGCATCGGCATTGATA-TATGCA-CT
* * ** * * * * *
58262940 AGTGTAAGACCATGTCT-GGGACAGGGCATCAGCCTCGA-CATGTGAGCCAGTGTAAGACCATGT
1 AGTGTAAGACCATG-CTAGGAACATGGCATTGGGCAC-ATTATGAGAGCCAGTGTATGACCATGT
* *
58263003 TTGGAACATGGCATCGGCA
64 CTGGGACATGGCATCGGCA
58263022 ATTCACCCTC
Statistics
Matches: 146, Mismatches: 26, Indels: 12
0.79 0.14 0.07
Matches are distributed among these distances:
95 4 0.03
96 137 0.94
97 5 0.03
ACGTcount: A:0.27, C:0.18, G:0.30, T:0.25
Consensus pattern (96 bp):
AGTGTAAGACCATGCTAGGAACATGGCATTGGGCACATTATGAGAGCCAGTGTATGACCATGTCT
GGGACATGGCATCGGCATTGATATATGCACT
Found at i:58270243 original size:14 final size:14
Alignment explanation
Indices: 58270224--58270257 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
58270214 GCTTAAAATT
58270224 TGGCACACAGGTAG
1 TGGCACACAGGTAG
*
58270238 TGGCACATAGGTAG
1 TGGCACACAGGTAG
*
58270252 AGGCAC
1 TGGCAC
58270258 GGGCGTGTGT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.29, C:0.21, G:0.35, T:0.15
Consensus pattern (14 bp):
TGGCACACAGGTAG
Found at i:58273300 original size:13 final size:13
Alignment explanation
Indices: 58273278--58273310 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
58273268 AAGGGTTTGT
58273278 TTAT-TAAACTAA
1 TTATCTAAACTAA
58273290 TTATCTAAACTAA
1 TTATCTAAACTAA
*
58273303 TTAACTAA
1 TTATCTAA
58273311 TTTAATTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.39
Consensus pattern (13 bp):
TTATCTAAACTAA
Found at i:58276247 original size:28 final size:29
Alignment explanation
Indices: 58276200--58276259 Score: 79
Period size: 28 Copynumber: 2.1 Consensus size: 29
58276190 AATAAAATTG
58276200 AAATGAAAATAGTAATAAAAAGAAAAATA
1 AAATGAAAATAGTAATAAAAAGAAAAATA
* *
58276229 AAAT-AAAATAAGTAA-AAAAATAAGAATA
1 AAATGAAAAT-AGTAATAAAAAGAAAAATA
58276257 AAA
1 AAA
58276260 AGATAGGAGG
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
28 19 0.68
29 9 0.32
ACGTcount: A:0.75, C:0.00, G:0.08, T:0.17
Consensus pattern (29 bp):
AAATGAAAATAGTAATAAAAAGAAAAATA
Found at i:58281638 original size:13 final size:13
Alignment explanation
Indices: 58281616--58281661 Score: 76
Period size: 13 Copynumber: 3.6 Consensus size: 13
58281606 AAGGGTTTGT
58281616 TTAT-TAAACTAA
1 TTATCTAAACTAA
58281628 TTATCTAAACTAA
1 TTATCTAAACTAA
58281641 TTATCTAAACTAA
1 TTATCTAAACTAA
*
58281654 TTAACTAA
1 TTATCTAA
58281662 TTTAATTAAA
Statistics
Matches: 32, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
12 4 0.12
13 28 0.88
ACGTcount: A:0.48, C:0.13, G:0.00, T:0.39
Consensus pattern (13 bp):
TTATCTAAACTAA
Found at i:58282635 original size:367 final size:367
Alignment explanation
Indices: 58281962--58282694 Score: 1360
Period size: 367 Copynumber: 2.0 Consensus size: 367
58281952 CCGAGAAAAT
* *
58281962 CTCGTAACCCTATTTCTAGGCGTTCGATCAACTCCGCTTAATTATTCCAAATCTACTCTTAGGCA
1 CTCGTAACCCTATTTCTAGGCGTTCGATCAACTCCGCCTAATTATGCCAAATCTACTCTTAGGCA
*
58282027 GGGTCTATTCCTCCTCTACATAAGCACATCAAATCATGAATTAATACTTGGAATATTAACTCAAG
66 GGGTCTATTCCTCCTCTACATAAGCACATCAAATCATGAATTAATACCTGGAATATTAACTCAAG
58282092 CATTAAGAACACATAATTAAAAACAAATCAAATATTTATCATACAGTTCAGATAATAATAACAAG
131 CATTAAGAACACATAATTAAAAACAAATCAAATATTTATCATACAGTTCAGATAATAATAACAAG
* **
58282157 ATCCAACATAGGTTTTATCCCCGTTTGGTATCTAAGGGGTTTAGTTCATAATAAAATAAGAGTAC
196 ATCCAACATAGGTTTTATCCCCCTTAAGTATCTAAGGGGTTTAGTTCATAATAAAATAAGAGTAC
58282222 ATCTCAAAAGTATAAAAATAACAAAACATGAAGAAAACTCTAAAACCCCTGAAGGAATTCTGAGA
261 ATCTCAAAAGTATAAAAATAACAAAACATGAAGAAAACTCTAAAACCCCTGAAGGAATTCTGAGA
58282287 GAGATCTTCAG-TCTTGGAATAGTTCCGGCTTTTGGGATGGAA
326 GAGATCTT-AGATCTTGGAATAGTTCCGGCTTTTGGGATGGAA
*
58282329 CTCGTAACCCTATTTCTAGGCGTTCGATCAACTCCGCCTAATTATGCCCAATCTACTCTTAGGCA
1 CTCGTAACCCTATTTCTAGGCGTTCGATCAACTCCGCCTAATTATGCCAAATCTACTCTTAGGCA
58282394 GGGTCTATTCCTCCTCTACATAAGCACATCAAATCATGAATTAATACCTGGAATATTAACTCAAG
66 GGGTCTATTCCTCCTCTACATAAGCACATCAAATCATGAATTAATACCTGGAATATTAACTCAAG
*
58282459 CATTAAGAACACATAATTAAAAACAAATCAAGTATTTATCATACAGTTCAGATAATAATAACAAG
131 CATTAAGAACACATAATTAAAAACAAATCAAATATTTATCATACAGTTCAGATAATAATAACAAG
*
58282524 ATCCATCATAGGTTTTATCCCCCTTAAGTATCTAAGGGGTTTAGTTCATAATAAAATAAGAGTAC
196 ATCCAACATAGGTTTTATCCCCCTTAAGTATCTAAGGGGTTTAGTTCATAATAAAATAAGAGTAC
58282589 ATCTCAAAAGTATAAAAATAACAAAACATGAAGAAAACTCTAAAACCCCTGAAGGAATTCTGAGA
261 ATCTCAAAAGTATAAAAATAACAAAACATGAAGAAAACTCTAAAACCCCTGAAGGAATTCTGAGA
*
58282654 GAGATCTTAGATCTTGGAGTAGTTCCGGCTTTTGGGATGGA
326 GAGATCTTAGATCTTGGAATAGTTCCGGCTTTTGGGATGGA
58282695 TCGTCTTGCT
Statistics
Matches: 355, Mismatches: 10, Indels: 2
0.97 0.03 0.01
Matches are distributed among these distances:
366 2 0.01
367 353 0.99
ACGTcount: A:0.37, C:0.19, G:0.15, T:0.29
Consensus pattern (367 bp):
CTCGTAACCCTATTTCTAGGCGTTCGATCAACTCCGCCTAATTATGCCAAATCTACTCTTAGGCA
GGGTCTATTCCTCCTCTACATAAGCACATCAAATCATGAATTAATACCTGGAATATTAACTCAAG
CATTAAGAACACATAATTAAAAACAAATCAAATATTTATCATACAGTTCAGATAATAATAACAAG
ATCCAACATAGGTTTTATCCCCCTTAAGTATCTAAGGGGTTTAGTTCATAATAAAATAAGAGTAC
ATCTCAAAAGTATAAAAATAACAAAACATGAAGAAAACTCTAAAACCCCTGAAGGAATTCTGAGA
GAGATCTTAGATCTTGGAATAGTTCCGGCTTTTGGGATGGAA
Found at i:58283084 original size:11 final size:11
Alignment explanation
Indices: 58283070--58283094 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
58283060 TTTTGTCCCC
58283070 TTTTTGCTCAT
1 TTTTTGCTCAT
58283081 TTTTTGCTCAT
1 TTTTTGCTCAT
58283092 TTT
1 TTT
58283095 GACTATTGGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.08, C:0.16, G:0.08, T:0.68
Consensus pattern (11 bp):
TTTTTGCTCAT
Found at i:58284385 original size:11 final size:11
Alignment explanation
Indices: 58284369--58284395 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
58284359 CAAATTTGAG
58284369 ATTTTAAAATT
1 ATTTTAAAATT
58284380 ATTTTAAAATT
1 ATTTTAAAATT
58284391 ATTTT
1 ATTTT
58284396 TGATGTTTAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (11 bp):
ATTTTAAAATT
Found at i:58290735 original size:26 final size:26
Alignment explanation
Indices: 58290696--58290773 Score: 111
Period size: 26 Copynumber: 3.0 Consensus size: 26
58290686 TTTACGTGCA
* *
58290696 AGGGACACATGGCCAGACAGCACGCT
1 AGGGACACACGGCCAGACAGCACGCC
* * *
58290722 GGGGACACACGGCCAGACAGTACACC
1 AGGGACACACGGCCAGACAGCACGCC
58290748 AGGGACACACGGCCAGACAGCACGCC
1 AGGGACACACGGCCAGACAGCACGCC
58290774 CATGGGGCTG
Statistics
Matches: 44, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 44 1.00
ACGTcount: A:0.31, C:0.35, G:0.31, T:0.04
Consensus pattern (26 bp):
AGGGACACACGGCCAGACAGCACGCC
Found at i:58295033 original size:40 final size:40
Alignment explanation
Indices: 58294978--58295245 Score: 464
Period size: 40 Copynumber: 6.7 Consensus size: 40
58294968 GAGCATTGGA
58294978 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
58295018 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTA
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
58295058 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
58295098 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTA
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
* * *
58295138 ATATGTCCGGGCTATGACCCGAAGGCAATTATGCGAGATG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
58295178 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
* *
58295218 ATATGTCCGGGTTAAGACCCGAAGGCAA
1 ATATATCCGGGCTAAGACCCGAAGGCAA
58295246 ATGTGTTTGC
Statistics
Matches: 215, Mismatches: 13, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 215 1.00
ACGTcount: A:0.31, C:0.20, G:0.27, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
Found at i:58317757 original size:39 final size:40
Alignment explanation
Indices: 58317693--58317898 Score: 278
Period size: 39 Copynumber: 5.3 Consensus size: 40
58317683 GTAACTCACC
* *
58317693 AATG-CTTCGGGACATAACCCAGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
58317732 AATGCCTTCGGGACTTAACCC-GATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
58317771 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA-G
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
58317810 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
58317850 AAGGCCTTCGGGGCTTAA-CCGGAATT-GTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
58317888 AATGCCTTCGG
1 AATGCCTTCGG
58317899 ATCTTAGTCC
Statistics
Matches: 156, Mismatches: 8, Indels: 7
0.91 0.05 0.04
Matches are distributed among these distances:
38 22 0.14
39 87 0.56
40 47 0.30
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:58317797 original size:79 final size:80
Alignment explanation
Indices: 58317693--58317898 Score: 278
Period size: 79 Copynumber: 2.6 Consensus size: 80
58317683 GTAACTCACC
* *
58317693 AATG-CTTCGGGACATAACCCAGATTTAATAACTCGCACGAATGCCTTCGGGACTTAACCC-GAT
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAATGCCTTCGGGACTTAACCCGGAT
*
58317756 TTAATAACTCGCACG
66 TTAATAACTCGCACA
58317771 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA-GAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAATGCCTTCGGGACTTAACCCGGAT
* *
58317835 TTAGTATCTCGCACA
66 TTAATAACTCGCACA
* * * * * *
58317850 AAGGCCTTCGGGGCTTAA-CCGGAATT-GTATCTCGCACAAATGCCTTCGG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAATGCCTTCGG
58317899 ATCTTAGTCC
Statistics
Matches: 114, Mismatches: 11, Indels: 6
0.87 0.08 0.05
Matches are distributed among these distances:
77 8 0.07
78 44 0.39
79 62 0.54
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (80 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAATGCCTTCGGGACTTAACCCGGAT
TTAATAACTCGCACA
Found at i:58325000 original size:40 final size:40
Alignment explanation
Indices: 58324902--58325071 Score: 234
Period size: 40 Copynumber: 4.3 Consensus size: 40
58324892 TCCTCGTTCA
* * * *
58324902 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCACG
*
58324941 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCACG
*
58324981 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCACG
* * * *
58325021 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCACG
*
58325061 AAGGCCTTCGG
1 AATGCCTTCGG
58325072 ATCTTAGTCT
Statistics
Matches: 119, Mismatches: 11, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
39 34 0.29
40 85 0.71
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCACG
Found at i:58325108 original size:80 final size:79
Alignment explanation
Indices: 58324900--58325124 Score: 211
Period size: 80 Copynumber: 2.8 Consensus size: 79
58324890 GCTCCTCGTT
* * * * * * *
58324900 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCA-CACAATGCCTTCGGGACATAACCCGG
1 CAAAGGCCTTCGGGACTTAACCCGGATATAATAACT-AGCACAATGCCTTCGGGACTTAACCCGG
58324964 ATTTAACAACTCGCA
65 ATTTAACAACTCGCA
* * * *
58324979 CGAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAATGCCTTCGGGACTTAACCCGG
1 CAAAGGCCTTCGGGACTTAACCCGGATATAATAACTAGCAC-AATGCCTTCGGGACTTAACCCGG
** *
58325044 ATTTAGTATCTCGCA
65 ATTTAACAACTCGCA
** * * * * *
58325059 CAAAGGCCTTC-GGATCTTAGTCTGGATATATTCACTTAGCACAAAGCCTTCGGGACTTAGCCCG
1 CAAAGGCCTTCGGGA-CTTAACCCGGATATAATAAC-TAGCACAATGCCTTCGGGACTTAACCCG
58325123 GA
64 GA
58325125 CAGCATTCAA
Statistics
Matches: 121, Mismatches: 21, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
79 37 0.31
80 79 0.65
81 5 0.04
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (79 bp):
CAAAGGCCTTCGGGACTTAACCCGGATATAATAACTAGCACAATGCCTTCGGGACTTAACCCGGA
TTTAACAACTCGCA
Found at i:58326712 original size:56 final size:56
Alignment explanation
Indices: 58326652--58326787 Score: 200
Period size: 56 Copynumber: 2.4 Consensus size: 56
58326642 TCCCAGACAG
* **
58326652 GGTCTTACTCGCACACATATATCGGAGTCACATATCGATGCCAACATATAAAATGT
1 GGTCTTACTCGCACACATATATCGGAGTCACATATCGATACCAACATATAAAACAT
** * *
58326708 GGTCTTACTCGCACACATATATTAGAGTCATATATTGATACCAACATATAAAACAT
1 GGTCTTACTCGCACACATATATCGGAGTCACATATCGATACCAACATATAAAACAT
*
58326764 GGTCTTACTCGCTCACATATATCG
1 GGTCTTACTCGCACACATATATCG
58326788 ATGCCATGGT
Statistics
Matches: 70, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
56 70 1.00
ACGTcount: A:0.34, C:0.23, G:0.14, T:0.29
Consensus pattern (56 bp):
GGTCTTACTCGCACACATATATCGGAGTCACATATCGATACCAACATATAAAACAT
Found at i:58329147 original size:18 final size:18
Alignment explanation
Indices: 58329126--58329170 Score: 63
Period size: 18 Copynumber: 2.5 Consensus size: 18
58329116 TACAAAATTA
58329126 AAAAAAAAGTTCGAATAT
1 AAAAAAAAGTTCGAATAT
** *
58329144 AAAAAAAAGTTTTAGTAT
1 AAAAAAAAGTTCGAATAT
58329162 AAAAAAAAG
1 AAAAAAAAG
58329171 AGAGAAGTGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.64, C:0.02, G:0.11, T:0.22
Consensus pattern (18 bp):
AAAAAAAAGTTCGAATAT
Found at i:58330102 original size:6 final size:6
Alignment explanation
Indices: 58330093--58330156 Score: 65
Period size: 6 Copynumber: 10.5 Consensus size: 6
58330083 AAAGAGAATG
* * * * *
58330093 AGAAAA AGAAAA ATGAAAT TGAAAA AGAAAG TGAAAA AGAAAA AGAGAA
1 AGAAAA AGAAAA A-GAAAA AGAAAA AGAAAA AGAAAA AGAAAA AGAAAA
*
58330142 GGAAAA AGAAAA AGA
1 AGAAAA AGAAAA AGA
58330157 GATGGAGAGT
Statistics
Matches: 45, Mismatches: 12, Indels: 2
0.76 0.20 0.03
Matches are distributed among these distances:
6 41 0.91
7 4 0.09
ACGTcount: A:0.72, C:0.00, G:0.22, T:0.06
Consensus pattern (6 bp):
AGAAAA
Found at i:58330127 original size:18 final size:18
Alignment explanation
Indices: 58330093--58330206 Score: 81
Period size: 18 Copynumber: 6.3 Consensus size: 18
58330083 AAAGAGAATG
* *
58330093 AGAAAAAGAAAAATGAAAT
1 AGAAAAAG-AAAGTGAAAA
*
58330112 TGAAAAAGAAAGTGAAAA
1 AGAAAAAGAAAGTGAAAA
58330130 AGAAAAAGAGAAG-GAAAA
1 AGAAAAAGA-AAGTGAAAA
* * *
58330148 AGAAAAAGAGA-TGGAGAG
1 AGAAAAAGAAAGT-GAAAA
* * *
58330166 TGAAAAAGAATGTG-AGA
1 AGAAAAAGAAAGTGAAAA
*
58330183 AGAAAAAGAAAATTGAAAA
1 AGAAAAAG-AAAGTGAAAA
58330202 AGAAA
1 AGAAA
58330207 TTGAGTCTGA
Statistics
Matches: 72, Mismatches: 17, Indels: 12
0.71 0.17 0.12
Matches are distributed among these distances:
17 8 0.11
18 46 0.64
19 18 0.25
ACGTcount: A:0.67, C:0.00, G:0.25, T:0.09
Consensus pattern (18 bp):
AGAAAAAGAAAGTGAAAA
Found at i:58330187 original size:17 final size:16
Alignment explanation
Indices: 58330147--58330192 Score: 56
Period size: 17 Copynumber: 2.7 Consensus size: 16
58330137 GAGAAGGAAA
58330147 AAGAAAAAGAGATGGAG
1 AAGAAAAAGA-ATGGAG
*
58330164 AGTGAAAAAGAATGTGAG
1 A-AGAAAAAGAATG-GAG
58330182 AAGAAAAAGAA
1 AAGAAAAAGAA
58330193 AATTGAAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
17 13 0.52
18 12 0.48
ACGTcount: A:0.61, C:0.00, G:0.30, T:0.09
Consensus pattern (16 bp):
AAGAAAAAGAATGGAG
Found at i:58333862 original size:17 final size:17
Alignment explanation
Indices: 58333836--58333871 Score: 63
Period size: 17 Copynumber: 2.1 Consensus size: 17
58333826 TAATTGTATG
*
58333836 TTTTATTATATTATAAC
1 TTTTAGTATATTATAAC
58333853 TTTTAGTATATTATAAC
1 TTTTAGTATATTATAAC
58333870 TT
1 TT
58333872 ATTAATTACT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.33, C:0.06, G:0.03, T:0.58
Consensus pattern (17 bp):
TTTTAGTATATTATAAC
Found at i:58337920 original size:79 final size:81
Alignment explanation
Indices: 58337809--58337993 Score: 209
Period size: 79 Copynumber: 2.3 Consensus size: 81
58337799 GCTACTCGTT
* * * *
58337809 CAAATGCCTTCGGAACATAGCCCGG-TTATAGTAACTCGCACAATTGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGG-GCTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
58337872 GGATTTAGTAAC-TCGCA
64 GGATATAGTAACTTAGCA
* **
58337889 CAAATGCCTTCGGGCTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGG
1 CAAATGCCTTCGGGCTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
* *
58337953 ATATGGTCACTTAGCA
66 ATATAGTAACTTAGCA
58337969 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGG-CTTAGCCCGGA
58337994 CATCATTCAA
Statistics
Matches: 90, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.60
80 33 0.37
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (81 bp):
CAAATGCCTTCGGGCTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
ATATAGTAACTTAGCA
Found at i:58337993 original size:40 final size:40
Alignment explanation
Indices: 58337790--58337993 Score: 220
Period size: 40 Copynumber: 5.1 Consensus size: 40
58337780 CGGAATTTAA
** * *
58337790 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGAACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
58337830 CCGGTTATAGTAACTCGCACAATTGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
58337870 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
58337909 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
58337949 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
58337989 CCGGA
1 CCGGA
58337994 CATCATTCAA
Statistics
Matches: 138, Mismatches: 19, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.24
40 91 0.66
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:58345941 original size:39 final size:40
Alignment explanation
Indices: 58345824--58346008 Score: 207
Period size: 40 Copynumber: 4.7 Consensus size: 40
58345814 GCTACTCGTT
* *
58345824 CAAATGCCTTCGGGACATAGCCCAG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
* *
58345864 CAATTGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
58345904 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * * *
58345943 CAAATGCCTTC-GGATCTTAGTCTGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
58345984 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
58346009 CATCATTCAA
Statistics
Matches: 122, Mismatches: 18, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
38 2 0.02
39 33 0.27
40 74 0.61
41 13 0.11
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:58345941 original size:79 final size:82
Alignment explanation
Indices: 58345824--58346008 Score: 211
Period size: 79 Copynumber: 2.3 Consensus size: 82
58345814 GCTACTCGTT
* * * *
58345824 CAAATGCCTTCGGGACATAGCCCAG-TTATAGTAACTCGCACAATTGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
58345887 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* ** *
58345904 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCTG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
58345967 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
58345984 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
58346009 CATCATTCAA
Statistics
Matches: 89, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
78 3 0.03
79 52 0.58
80 34 0.38
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:58352715 original size:29 final size:29
Alignment explanation
Indices: 58352666--58352746 Score: 110
Period size: 29 Copynumber: 2.8 Consensus size: 29
58352656 GGCTATGTAA
*
58352666 GTGATTTGGGCCTAATAGGCCATACGAAT
1 GTGATTTGGGCCTAATGGGCCATACGAAT
* *
58352695 GTGATTTGGGCCCAATGGGCCATATGAAT
1 GTGATTTGGGCCTAATGGGCCATACGAAT
* *
58352724 GAGA-TTGGGCCTAGTGGGCCATA
1 GTGATTTGGGCCTAATGGGCCATA
58352747 TATATGTATG
Statistics
Matches: 46, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
28 17 0.37
29 29 0.63
ACGTcount: A:0.25, C:0.17, G:0.32, T:0.26
Consensus pattern (29 bp):
GTGATTTGGGCCTAATGGGCCATACGAAT
Found at i:58366540 original size:29 final size:29
Alignment explanation
Indices: 58366498--58366580 Score: 78
Period size: 29 Copynumber: 2.9 Consensus size: 29
58366488 ATGACTATGT
* * *
58366498 ATGTAATTTCGGCCTAATGGGCGATACGA
1 ATGTGATTTGGGCCTAATGGGCCATACGA
* * *
58366527 ATGTGATTTGGGCCCAATGTGCCATATGA
1 ATGTGATTTGGGCCTAATGGGCCATACGA
** *
58366556 ATAAGA-TTGGGCCTAGTGGGCCATA
1 ATGTGATTTGGGCCTAATGGGCCATA
58366581 TACATGTATG
Statistics
Matches: 43, Mismatches: 11, Indels: 1
0.78 0.20 0.02
Matches are distributed among these distances:
28 16 0.37
29 27 0.63
ACGTcount: A:0.27, C:0.17, G:0.29, T:0.28
Consensus pattern (29 bp):
ATGTGATTTGGGCCTAATGGGCCATACGA
Found at i:58367728 original size:17 final size:18
Alignment explanation
Indices: 58367693--58367728 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
58367683 ATTTTAAGGA
58367693 AAGGTTTTCAATGAAAAC
1 AAGGTTTTCAATGAAAAC
*
58367711 AAGGTTTTCGAT-AAAAC
1 AAGGTTTTCAATGAAAAC
58367728 A
1 A
58367729 CTTCAATGTG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 6 0.35
18 11 0.65
ACGTcount: A:0.44, C:0.11, G:0.17, T:0.28
Consensus pattern (18 bp):
AAGGTTTTCAATGAAAAC
Found at i:58367887 original size:30 final size:30
Alignment explanation
Indices: 58367853--58367913 Score: 113
Period size: 30 Copynumber: 2.0 Consensus size: 30
58367843 TCATAGCTTC
58367853 AGTCGAAACACACTCTCGGGCATATCAACT
1 AGTCGAAACACACTCTCGGGCATATCAACT
*
58367883 AGTCGAAACACACTCTCGGGTATATCAACT
1 AGTCGAAACACACTCTCGGGCATATCAACT
58367913 A
1 A
58367914 AGTCTCACAA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.34, C:0.28, G:0.16, T:0.21
Consensus pattern (30 bp):
AGTCGAAACACACTCTCGGGCATATCAACT
Found at i:58368901 original size:32 final size:32
Alignment explanation
Indices: 58368851--58368942 Score: 139
Period size: 32 Copynumber: 2.9 Consensus size: 32
58368841 TAACCCATCA
* *
58368851 CAATATCAATTGGGCCTAGCCCATCTCAGAAT
1 CAATATCAATTGGGCCTAGCCCATATCAGAAC
* * *
58368883 CAATATCAGTTGGACCTAGCCCATATTAGAAC
1 CAATATCAATTGGGCCTAGCCCATATCAGAAC
58368915 CAATATCAATTGGGCCTAGCCCATATCA
1 CAATATCAATTGGGCCTAGCCCATATCA
58368943 ATATCAAACC
Statistics
Matches: 52, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
32 52 1.00
ACGTcount: A:0.33, C:0.27, G:0.15, T:0.25
Consensus pattern (32 bp):
CAATATCAATTGGGCCTAGCCCATATCAGAAC
Found at i:58375464 original size:28 final size:28
Alignment explanation
Indices: 58375420--58375518 Score: 144
Period size: 28 Copynumber: 3.5 Consensus size: 28
58375410 CATGACTATA
* * *
58375420 AATGTGATTGGGTCTGACGGACCATATG
1 AATGTGATTGGGCCTGATGGGCCATATG
*
58375448 AAAGTGATTGGGCCTGATGGGCCATATG
1 AATGTGATTGGGCCTGATGGGCCATATG
*
58375476 AATGTGATTGGGCCCGATGGGCCATATG
1 AATGTGATTGGGCCTGATGGGCCATATG
*
58375504 AATGAGATTGGGCCT
1 AATGTGATTGGGCCT
58375519 AAAGGGGCCA
Statistics
Matches: 63, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 63 1.00
ACGTcount: A:0.24, C:0.15, G:0.34, T:0.26
Consensus pattern (28 bp):
AATGTGATTGGGCCTGATGGGCCATATG
Found at i:58376805 original size:17 final size:19
Alignment explanation
Indices: 58376769--58376805 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 19
58376759 TATTTCAAAG
58376769 AAGGCTTTTCAATGAAAAC
1 AAGGCTTTTCAATGAAAAC
*
58376788 AAGG-TTTTCGAT-AAAAC
1 AAGGCTTTTCAATGAAAAC
58376805 A
1 A
58376806 CTTCAATGTG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
17 6 0.35
18 7 0.41
19 4 0.24
ACGTcount: A:0.43, C:0.14, G:0.16, T:0.27
Consensus pattern (19 bp):
AAGGCTTTTCAATGAAAAC
Found at i:58379094 original size:27 final size:27
Alignment explanation
Indices: 58379064--58379185 Score: 162
Period size: 27 Copynumber: 4.6 Consensus size: 27
58379054 ACGAATTTAA
58379064 TGTATTTGCACACTTTCGATCACTTCT
1 TGTATTTGCACACTTTCGATCACTTCT
58379091 TGTATTTGCACACTTTCGATCACTTCT
1 TGTATTTGCACACTTTCGATCACTTCT
* *
58379118 TGTATTTGCACACTTTC-ATACATTTCA
1 TGTATTTGCACACTTTCGAT-CACTTCT
* *
58379145 CG--TTCGTC-CACTTTCGATCACTTCT
1 TGTATTTG-CACACTTTCGATCACTTCT
58379170 TGTATTTGCACACTTT
1 TGTATTTGCACACTTT
58379186 AGTGCTATTA
Statistics
Matches: 81, Mismatches: 8, Indels: 12
0.80 0.08 0.12
Matches are distributed among these distances:
25 16 0.20
26 6 0.07
27 59 0.73
ACGTcount: A:0.19, C:0.26, G:0.11, T:0.44
Consensus pattern (27 bp):
TGTATTTGCACACTTTCGATCACTTCT
Found at i:58379252 original size:29 final size:29
Alignment explanation
Indices: 58379212--58379270 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
58379202 TCACAATGCA
58379212 TTTACTTCGCACACTTAGTGCTCGATAAT
1 TTTACTTCGCACACTTAGTGCTCGATAAT
58379241 TTTACTTCGCACACTTAGTGCTCGATAAT
1 TTTACTTCGCACACTTAGTGCTCGATAAT
58379270 T
1 T
58379271 CACACATATA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.24, C:0.24, G:0.14, T:0.39
Consensus pattern (29 bp):
TTTACTTCGCACACTTAGTGCTCGATAAT
Found at i:58383438 original size:56 final size:56
Alignment explanation
Indices: 58383378--58383513 Score: 193
Period size: 56 Copynumber: 2.4 Consensus size: 56
58383368 TCCCAGACAG
* *
58383378 GGTCTTACTCGCACACATATATCGGAGTCACATATCGATGCCAACGTATAAAATAT
1 GGTCTTACTCGCACACATATATCGGAGTCACATATCGATACCAACGTATAAAACAT
* *
58383434 GGTCTTACAT-GCACACATATATCGGAGTCACATATCGATACCAATGTATAAAACGT
1 GGTCTTAC-TCGCACACATATATCGGAGTCACATATCGATACCAACGTATAAAACAT
* **
58383490 GGTCCTACTCATACACATATATCG
1 GGTCTTACTCGCACACATATATCG
58383514 ATGACATGGT
Statistics
Matches: 71, Mismatches: 7, Indels: 4
0.87 0.09 0.05
Matches are distributed among these distances:
55 1 0.01
56 69 0.97
57 1 0.01
ACGTcount: A:0.34, C:0.24, G:0.15, T:0.27
Consensus pattern (56 bp):
GGTCTTACTCGCACACATATATCGGAGTCACATATCGATACCAACGTATAAAACAT
Found at i:58384876 original size:10 final size:10
Alignment explanation
Indices: 58384863--58384888 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
58384853 AGCTTAGTTC
58384863 AGCTCAATTA
1 AGCTCAATTA
58384873 AGCTCAATTA
1 AGCTCAATTA
58384883 AGCTCA
1 AGCTCA
58384889 TCTCTACTTC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.38, C:0.23, G:0.12, T:0.27
Consensus pattern (10 bp):
AGCTCAATTA
Found at i:58387581 original size:15 final size:16
Alignment explanation
Indices: 58387551--58387582 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
58387541 GAATGGAGTA
58387551 AGTGAAATTATGTAAT
1 AGTGAAATTATGTAAT
58387567 AGTGAAATT-TGTAAT
1 AGTGAAATTATGTAAT
58387582 A
1 A
58387583 AAATAGTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 7 0.44
16 9 0.56
ACGTcount: A:0.44, C:0.00, G:0.19, T:0.38
Consensus pattern (16 bp):
AGTGAAATTATGTAAT
Found at i:58391258 original size:18 final size:17
Alignment explanation
Indices: 58391209--58391259 Score: 61
Period size: 15 Copynumber: 2.9 Consensus size: 17
58391199 AAATAAAGTG
58391209 AAAAGAAATTGAGAAAAGA
1 AAAAG-AATTGAG-AAAGA
58391228 AAAAGAA--GAGAAAGA
1 AAAAGAATTGAGAAAGA
58391243 AAAAGAATGTGAGAAAG
1 AAAAGAAT-TGAGAAAG
58391260 TGAATGTTTT
Statistics
Matches: 29, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
15 12 0.41
16 3 0.10
18 9 0.31
19 5 0.17
ACGTcount: A:0.67, C:0.00, G:0.25, T:0.08
Consensus pattern (17 bp):
AAAAGAATTGAGAAAGA
Done.