Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100714657
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 3970000 characters in sequence are not A, C, G, or T
File 186 of 318
Found at i:58395256 original size:40 final size:39
Alignment explanation
Indices: 58395076--58395285 Score: 307
Period size: 39 Copynumber: 5.3 Consensus size: 39
58395066 GGACTAAGAT
58395076 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGC
1 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGC
58395115 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGC
1 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGC
58395154 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGC
1 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGC
* * *
58395193 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAG-C
* * *
58395233 CCTAAGGCATTTGTGCGA-ATTACT-ATAACCGGGCTATGTC
1 CCGAAGGCATTTGTGCGAGA-TACTAAT-TCCGGGCTAAG-C
*
58395273 CCTAAGGCATTTG
1 CCGAAGGCATTTG
58395286 AACGAGGAGC
Statistics
Matches: 159, Mismatches: 9, Indels: 5
0.92 0.05 0.03
Matches are distributed among these distances:
39 114 0.72
40 45 0.28
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (39 bp):
CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGC
Found at i:58398484 original size:13 final size:13
Alignment explanation
Indices: 58398466--58398494 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
58398456 GGTTAAAGTG
58398466 ATAATATAATTGT
1 ATAATATAATTGT
58398479 ATAATATAATTGT
1 ATAATATAATTGT
58398492 ATA
1 ATA
58398495 CAAATGTATA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.48, C:0.00, G:0.07, T:0.45
Consensus pattern (13 bp):
ATAATATAATTGT
Found at i:58412710 original size:19 final size:19
Alignment explanation
Indices: 58412686--58412724 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
58412676 ATTTTCGAAG
*
58412686 ATAGATTTAAGATTAGGCT
1 ATAGATTTAAGATCAGGCT
*
58412705 ATAGATTTGAGATCAGGCT
1 ATAGATTTAAGATCAGGCT
58412724 A
1 A
58412725 CTATCAGTTG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.36, C:0.08, G:0.23, T:0.33
Consensus pattern (19 bp):
ATAGATTTAAGATCAGGCT
Found at i:58416033 original size:18 final size:17
Alignment explanation
Indices: 58415987--58416026 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
58415977 TTTTGAAAAG
*
58415987 AAAAGCAAATGAA-TCTT
1 AAAAACAAAT-AAGTCTT
58416004 AAAAACAAATAAGTCTT
1 AAAAACAAATAAGTCTT
58416021 AAAAAC
1 AAAAAC
58416027 TTAATAAAAG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 2 0.10
17 19 0.90
ACGTcount: A:0.60, C:0.12, G:0.07, T:0.20
Consensus pattern (17 bp):
AAAAACAAATAAGTCTT
Found at i:58420411 original size:151 final size:151
Alignment explanation
Indices: 58420137--58420439 Score: 606
Period size: 151 Copynumber: 2.0 Consensus size: 151
58420127 ATTCAGAAAA
58420137 TAATAACAAGATTTATCTTAGGTTTCATTCCCCTTAGGTATTTAGGGGATTTAGTTCATAACTAA
1 TAATAACAAGATTTATCTTAGGTTTCATTCCCCTTAGGTATTTAGGGGATTTAGTTCATAACTAA
58420202 ATAAGAAAACATCTTAGAAGAATAAAGAATACAAAACATAATGAAAATCCACAACTCCTGAAGAG
66 ATAAGAAAACATCTTAGAAGAATAAAGAATACAAAACATAATGAAAATCCACAACTCCTGAAGAG
58420267 AAATTGAGGAGAGATCTTTAG
131 AAATTGAGGAGAGATCTTTAG
58420288 TAATAACAAGATTTATCTTAGGTTTCATTCCCCTTAGGTATTTAGGGGATTTAGTTCATAACTAA
1 TAATAACAAGATTTATCTTAGGTTTCATTCCCCTTAGGTATTTAGGGGATTTAGTTCATAACTAA
58420353 ATAAGAAAACATCTTAGAAGAATAAAGAATACAAAACATAATGAAAATCCACAACTCCTGAAGAG
66 ATAAGAAAACATCTTAGAAGAATAAAGAATACAAAACATAATGAAAATCCACAACTCCTGAAGAG
58420418 AAATTGAGGAGAGATCTTTAG
131 AAATTGAGGAGAGATCTTTAG
58420439 T
1 T
58420440 CTTGATGATG
Statistics
Matches: 152, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
151 152 1.00
ACGTcount: A:0.42, C:0.13, G:0.16, T:0.29
Consensus pattern (151 bp):
TAATAACAAGATTTATCTTAGGTTTCATTCCCCTTAGGTATTTAGGGGATTTAGTTCATAACTAA
ATAAGAAAACATCTTAGAAGAATAAAGAATACAAAACATAATGAAAATCCACAACTCCTGAAGAG
AAATTGAGGAGAGATCTTTAG
Found at i:58427727 original size:80 final size:80
Alignment explanation
Indices: 58427492--58427742 Score: 235
Period size: 80 Copynumber: 3.2 Consensus size: 80
58427482 ATGTCCGTGC
* * * * * ** *
58427492 TAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCATTTGTGCA
1 TAAGTCCCGAAGGCATTTGTGCGAA-TTACTAAATCCGGGCTAAG-TCCCGAAGGCATTTGAACG
* *
58427555 AGAT-ACTAATTCCGGGC
64 AG-TGACTAAATCCGGGT
* * **
58427572 TAAG-CCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAG
1 TAAGTCCCGAAGGCATTTGTGCGAATTACTAAATCCGGGCTAAGTCCCGAAGGCATTTGAACGAG
*
58427636 TTACTAAATCCGGGT
66 TGACTAAATCCGGGT
* * *
58427651 TAAGTCCCGAAGGCATTTGTGCGAATTATTATATCCGGGCTATGTCCCGAAGGCATTTGAACGAG
1 TAAGTCCCGAAGGCATTTGTGCGAATTACTAAATCCGGGCTAAGTCCCGAAGGCATTTGAACGAG
*
58427716 -GAGCTATATCC-GGT
66 TGA-CTAAATCCGGGT
* *
58427730 TAAATTCCGAAGG
1 TAAGTCCCGAAGG
58427743 TACGTGATTT
Statistics
Matches: 145, Mismatches: 21, Indels: 11
0.82 0.12 0.06
Matches are distributed among these distances:
78 2 0.01
79 71 0.49
80 72 0.50
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.26
Consensus pattern (80 bp):
TAAGTCCCGAAGGCATTTGTGCGAATTACTAAATCCGGGCTAAGTCCCGAAGGCATTTGAACGAG
TGACTAAATCCGGGT
Found at i:58427728 original size:40 final size:40
Alignment explanation
Indices: 58427485--58427709 Score: 276
Period size: 40 Copynumber: 5.7 Consensus size: 40
58427475 TTGAATGATG
* * * * *
58427485 TCCGTGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * * *
58427525 TCCGGACTAAGAT-CCGAAGGCATTTGTGCAAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
58427565 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
58427604 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* * * *
58427644 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTATTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
58427684 TCCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
58427710 AACGAGGAGC
Statistics
Matches: 164, Mismatches: 17, Indels: 8
0.87 0.09 0.04
Matches are distributed among these distances:
39 34 0.21
40 122 0.74
41 8 0.05
ACGTcount: A:0.25, C:0.22, G:0.26, T:0.27
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:58427731 original size:119 final size:119
Alignment explanation
Indices: 58427492--58427742 Score: 271
Period size: 119 Copynumber: 2.1 Consensus size: 119
58427482 ATGTCCGTGC
*
58427492 TAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTTGTGCAAG
1 TAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTTGTGCAAG
** *
58427557 ATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGT
66 ATACTAATTCCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAAATCCGGGT
* * * **
58427611 TAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCATTTGTGCG
1 TAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCATTTGTGC-
* * * *
58427674 AA-TTA-TTATATCCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATATCC-GGT
63 AAGATACTAAT-TCCGGGCTAAG-CCCGAAGGCATTTGAACGAGTGA-CTAAATCCGGGT
* *
58427730 TAAATTCCGAAGG
1 TAAGTCCCGAAGG
58427743 TACGTGATTT
Statistics
Matches: 111, Mismatches: 15, Indels: 12
0.80 0.11 0.09
Matches are distributed among these distances:
118 4 0.04
119 73 0.66
120 34 0.31
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.26
Consensus pattern (119 bp):
TAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTTGTGCAAG
ATACTAATTCCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAAATCCGGGT
Found at i:58435479 original size:69 final size:79
Alignment explanation
Indices: 58435345--58435558 Score: 227
Period size: 69 Copynumber: 2.8 Consensus size: 79
58435335 TTGAATGATG
* * * * *
58435345 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTATAACCGGGCTAAG-TCCCGAAGGCAT
58435408 TTGTGCGAGATACT-AA
63 TTGTGCGAGATACTAAA
*
58435424 TCC-GGCTAAGCCCGAA-GCA-TTGTGCG-G-T-CTA-ATCCGGG-TAAG-CCCGAAGGCATTTG
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTG
*
58435480 TGCGAGTTACTAAA
66 TGCGAGATACTAAA
* * *
58435494 TCCGGGTTAAGTCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTG
58435559 AACGAGGAGC
Statistics
Matches: 114, Mismatches: 9, Indels: 24
0.78 0.06 0.16
Matches are distributed among these distances:
69 23 0.20
70 9 0.08
71 17 0.15
72 5 0.04
73 7 0.06
74 2 0.02
75 1 0.01
76 11 0.10
77 12 0.11
78 10 0.09
79 17 0.15
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (79 bp):
TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTG
TGCGAGATACTAAA
Found at i:58435514 original size:39 final size:39
Alignment explanation
Indices: 58435345--58435558 Score: 216
Period size: 39 Copynumber: 5.6 Consensus size: 39
58435335 TTGAATGATG
* * * *
58435345 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAA
* *
58435385 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACT-AA
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
*
58435424 TCC-GGCTAAGCCCGAA-GCA-TTGTGCG-G-T-CT-AA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
*
58435456 TCCGGG-TAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
*
58435494 TCCGGGTTAAGTCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTA-AA
*
58435534 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGT-CCGAAGGCATTTG
58435559 AACGAGGAGC
Statistics
Matches: 151, Mismatches: 11, Indels: 24
0.81 0.06 0.13
Matches are distributed among these distances:
32 17 0.11
33 6 0.04
34 8 0.05
35 8 0.05
36 4 0.03
37 7 0.05
38 14 0.09
39 42 0.28
40 37 0.25
41 8 0.05
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:58443340 original size:39 final size:40
Alignment explanation
Indices: 58443239--58443463 Score: 269
Period size: 40 Copynumber: 5.7 Consensus size: 40
58443229 TTGAATGATG
* * * * *
58443239 TCCGGGCTAAGTCCCGAAGGC-TTTGCGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
58443279 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
58443319 TCCGAGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
58443358 TCCGGGTTAAGTCCCGATGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
58443398 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
58443439 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
58443464 AACGAGGAGC
Statistics
Matches: 160, Mismatches: 20, Indels: 10
0.84 0.11 0.05
Matches are distributed among these distances:
39 33 0.21
40 118 0.74
41 9 0.06
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:58454690 original size:16 final size:16
Alignment explanation
Indices: 58454669--58454701 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
58454659 TTCTTTTCTC
58454669 GTTTTCTTTTACAAGA
1 GTTTTCTTTTACAAGA
58454685 GTTTTCTTTTACAAGA
1 GTTTTCTTTTACAAGA
58454701 G
1 G
58454702 GTTACAAAAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.24, C:0.12, G:0.15, T:0.48
Consensus pattern (16 bp):
GTTTTCTTTTACAAGA
Found at i:58461761 original size:27 final size:27
Alignment explanation
Indices: 58461727--58461918 Score: 194
Period size: 27 Copynumber: 7.1 Consensus size: 27
58461717 TAGTCATCCA
* * *
58461727 ACCACATAAGGGAAAAATAGTTATTTT
1 ACCACATAAGGGCAAAACAGTCATTTT
*
58461754 ACCTCATAAGGGCAAAATCA-TCATTTT
1 ACCACATAAGGGCAAAA-CAGTCATTTT
*
58461781 ACCACATAAGGGCAAAACCGTCATTTT
1 ACCACATAAGGGCAAAACAGTCATTTT
* * *
58461808 AACACATAAGGGAAAAACAGTTATTTT
1 ACCACATAAGGGCAAAACAGTCATTTT
*
58461835 GCCACATAAGGGCAAAACCA-TCATTTT
1 ACCACATAAGGGCAAAA-CAGTCATTTT
* *
58461862 ATCACATAAAGGCAAAATC-GTCATTTT
1 ACCACATAAGGGCAAAA-CAGTCATTTT
* * *
58461889 AACACATTAA-GGCAAAATAATCATTTT
1 ACCACA-TAAGGGCAAAACAGTCATTTT
58461916 ACC
1 ACC
58461919 TTATAGGGGT
Statistics
Matches: 137, Mismatches: 22, Indels: 12
0.80 0.13 0.07
Matches are distributed among these distances:
26 1 0.01
27 130 0.95
28 6 0.04
ACGTcount: A:0.42, C:0.19, G:0.12, T:0.27
Consensus pattern (27 bp):
ACCACATAAGGGCAAAACAGTCATTTT
Found at i:58461886 original size:81 final size:81
Alignment explanation
Indices: 58461700--58461905 Score: 279
Period size: 81 Copynumber: 2.5 Consensus size: 81
58461690 ATAAACATAC
* * ** * *
58461700 ATCACATAGAGGCAAAATAGTCA-TCCAACCACATAAGGGAAAAATAGTTATTTTACCTCATAAG
1 ATCACATAAAGGCAAAATCGTCATTTTAA-CACATAAGGGAAAAACAGTTATTTTACCACATAAG
*
58461764 GGCAAAATCATCATTTT
65 GGCAAAACCATCATTTT
* * * *
58461781 ACCACATAAGGGCAAAACCGTCATTTTAACACATAAGGGAAAAACAGTTATTTTGCCACATAAGG
1 ATCACATAAAGGCAAAATCGTCATTTTAACACATAAGGGAAAAACAGTTATTTTACCACATAAGG
58461846 GCAAAACCATCATTTT
66 GCAAAACCATCATTTT
*
58461862 ATCACATAAAGGCAAAATCGTCATTTTAACACATTAAGGCAAAA
1 ATCACATAAAGGCAAAATCGTCATTTTAACACA-TAAGGGAAAA
58461906 TAATCATTTT
Statistics
Matches: 108, Mismatches: 15, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
81 96 0.89
82 12 0.11
ACGTcount: A:0.43, C:0.19, G:0.14, T:0.24
Consensus pattern (81 bp):
ATCACATAAAGGCAAAATCGTCATTTTAACACATAAGGGAAAAACAGTTATTTTACCACATAAGG
GCAAAACCATCATTTT
Found at i:58461888 original size:54 final size:54
Alignment explanation
Indices: 58461700--58461916 Score: 197
Period size: 54 Copynumber: 4.0 Consensus size: 54
58461690 ATAAACATAC
* * *** ** *
58461700 ATCACATAGAGGCAAAATAGTCATCCAACCACATAAGGG-AAAAATAGTTATTTT
1 ATCACATAAAGGCAAAATCGTCATTTTACCACATAAGGGCAAAACCA-TCATTTT
* * * * *
58461754 ACCTCATAAGGGCAAAATCATCATTTTACCACATAAGGGCAAAACCGTCATTTT
1 ATCACATAAAGGCAAAATCGTCATTTTACCACATAAGGGCAAAACCATCATTTT
* * * * *
58461808 AACACAT-AAGGGAAAAACAGTTATTTTGCCACATAAGGGCAAAACCATCATTTT
1 ATCACATAAAGGCAAAATC-GTCATTTTACCACATAAGGGCAAAACCATCATTTT
* **
58461862 ATCACATAAAGGCAAAATCGTCATTTTAACACATTAA-GGCAAAATAATCATTTT
1 ATCACATAAAGGCAAAATCGTCATTTTACCACA-TAAGGGCAAAACCATCATTTT
58461916 A
1 A
58461917 CCTTATAGGG
Statistics
Matches: 129, Mismatches: 30, Indels: 8
0.77 0.18 0.05
Matches are distributed among these distances:
53 8 0.06
54 105 0.81
55 16 0.12
ACGTcount: A:0.42, C:0.19, G:0.13, T:0.26
Consensus pattern (54 bp):
ATCACATAAAGGCAAAATCGTCATTTTACCACATAAGGGCAAAACCATCATTTT
Found at i:58461939 original size:27 final size:27
Alignment explanation
Indices: 58461909--58462105 Score: 274
Period size: 27 Copynumber: 7.3 Consensus size: 27
58461899 GGCAAAATAA
* * *
58461909 TCATTTTACCTTATAGGGGTATTTCGG
1 TCATTTTACCCTATGGGGGTATTTCAG
58461936 TCATTTTACCCTATGGGGGTATTTCAG
1 TCATTTTACCCTATGGGGGTATTTCAG
* *
58461963 TCATATTACCCTAT-GGGGTATTTTAG
1 TCATTTTACCCTATGGGGGTATTTCAG
58461989 TCATTTTACCCTATGGGGGTATTTCAG
1 TCATTTTACCCTATGGGGGTATTTCAG
* *
58462016 TCATTTTACTCTATGGGGGTATTT-TG
1 TCATTTTACCCTATGGGGGTATTTCAG
* *
58462042 ATCATTTTACCATATAGGGGTATTTCAG
1 -TCATTTTACCCTATGGGGGTATTTCAG
58462070 TCATTTTACCCTATGGGGGTATTTC-G
1 TCATTTTACCCTATGGGGGTATTTCAG
58462096 ATCATTTTAC
1 -TCATTTTAC
58462106 AAGTAAATAA
Statistics
Matches: 151, Mismatches: 15, Indels: 8
0.87 0.09 0.05
Matches are distributed among these distances:
26 26 0.17
27 124 0.82
28 1 0.01
ACGTcount: A:0.20, C:0.16, G:0.20, T:0.43
Consensus pattern (27 bp):
TCATTTTACCCTATGGGGGTATTTCAG
Found at i:58462009 original size:80 final size:81
Alignment explanation
Indices: 58461909--58462105 Score: 290
Period size: 80 Copynumber: 2.4 Consensus size: 81
58461899 GGCAAAATAA
* *
58461909 TCATTTTACCTTATAGGGGTATTTCGGTCATTTTACCCTATGGGGGTATTTCAG-TCATATTACC
1 TCATTTTACCCTATGGGGGTATTTCGGTCATTTTACCCTATGGGGGTATTT-AGATCATATTACC
* *
58461973 CTAT-GGGGTATTTTAG
65 ATATAGGGGTATTTCAG
* * * *
58461989 TCATTTTACCCTATGGGGGTATTTCAGTCATTTTACTCTATGGGGGTATTTTGATCATTTTACCA
1 TCATTTTACCCTATGGGGGTATTTCGGTCATTTTACCCTATGGGGGTATTTAGATCATATTACCA
58462054 TATAGGGGTATTTCAG
66 TATAGGGGTATTTCAG
*
58462070 TCATTTTACCCTATGGGGGTATTTCGATCATTTTAC
1 TCATTTTACCCTATGGGGGTATTTCGGTCATTTTAC
58462106 AAGTAAATAA
Statistics
Matches: 105, Mismatches: 10, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
79 1 0.01
80 59 0.56
81 45 0.43
ACGTcount: A:0.20, C:0.16, G:0.20, T:0.43
Consensus pattern (81 bp):
TCATTTTACCCTATGGGGGTATTTCGGTCATTTTACCCTATGGGGGTATTTAGATCATATTACCA
TATAGGGGTATTTCAG
Found at i:58463134 original size:27 final size:26
Alignment explanation
Indices: 58463086--58463145 Score: 68
Period size: 27 Copynumber: 2.3 Consensus size: 26
58463076 GCGAGGCTGC
*
58463086 CAGATATTGTGCTGAAGTCACCAGATA
1 CAGATATTGTGCTGAAGCCACCAGA-A
* *
58463113 TAGATATTGTGGCT-AGGCCACCAGAA
1 CAGATATTGT-GCTGAAGCCACCAGAA
58463139 CAGATAT
1 CAGATAT
58463146 ATATATGTGG
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
26 7 0.25
27 18 0.64
28 3 0.11
ACGTcount: A:0.33, C:0.18, G:0.23, T:0.25
Consensus pattern (26 bp):
CAGATATTGTGCTGAAGCCACCAGAA
Found at i:58463164 original size:31 final size:32
Alignment explanation
Indices: 58463107--58463168 Score: 90
Period size: 31 Copynumber: 2.0 Consensus size: 32
58463097 CTGAAGTCAC
* *
58463107 CAGATATAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATAGATATTGTGGCGAAGCCACCAGAA
*
58463139 CAGATATATATA-TGTGGCGAAGCCACCAGA
1 CAGATATAGATATTGTGGCGAAGCCACCAGA
58463169 TTGCAGCGAG
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
31 16 0.59
32 11 0.41
ACGTcount: A:0.35, C:0.19, G:0.24, T:0.21
Consensus pattern (32 bp):
CAGATATAGATATTGTGGCGAAGCCACCAGAA
Found at i:58463939 original size:27 final size:27
Alignment explanation
Indices: 58463881--58464024 Score: 146
Period size: 27 Copynumber: 5.3 Consensus size: 27
58463871 GGTAAAATGG
* * * *
58463881 TAATTTTACCCCACAAGGGTATCTCGA
1 TAATTCTACCCTACAGGGGTATTTCGA
*
58463908 TAATTCTACCCTACAGGGGTATTTCAA
1 TAATTCTACCCTACAGGGGTATTTCGA
* * *
58463935 AAATTCTATCCTACAGGGGTATATTTG-
1 TAATTCTACCCTACAGGGGTAT-TTCGA
* *
58463962 TAATTCTACCCTACAGAGGTATTTCGG
1 TAATTCTACCCTACAGGGGTATTTCGA
* * * *
58463989 TAATTCTATCCTACAAGAGTATTTCGG
1 TAATTCTACCCTACAGGGGTATTTCGA
58464016 TAATTCTAC
1 TAATTCTAC
58464025 AACTTATCCA
Statistics
Matches: 97, Mismatches: 18, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
26 3 0.03
27 92 0.95
28 2 0.02
ACGTcount: A:0.29, C:0.21, G:0.15, T:0.35
Consensus pattern (27 bp):
TAATTCTACCCTACAGGGGTATTTCGA
Found at i:58464019 original size:54 final size:54
Alignment explanation
Indices: 58463879--58464024 Score: 168
Period size: 54 Copynumber: 2.7 Consensus size: 54
58463869 AGGGTAAAAT
* * * * * *
58463879 GGTAATTTTACCCCACAAGGGTATCTCGATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTATCCTACAAGGGTATTTCGGTAATTCTACCCTACAGAGGTATTTC
*** * *
58463933 AAAAATTCTATCCTACAGGGGTATATT-TGTAATTCTACCCTACAGAGGTATTTC
1 GGTAATTCTATCCTACAAGGGTAT-TTCGGTAATTCTACCCTACAGAGGTATTTC
*
58463987 GGTAATTCTATCCTACAAGAGTATTTCGGTAATTCTAC
1 GGTAATTCTATCCTACAAGGGTATTTCGGTAATTCTAC
58464025 AACTTATCCA
Statistics
Matches: 73, Mismatches: 17, Indels: 4
0.78 0.18 0.04
Matches are distributed among these distances:
53 2 0.03
54 70 0.96
55 1 0.01
ACGTcount: A:0.29, C:0.21, G:0.16, T:0.34
Consensus pattern (54 bp):
GGTAATTCTATCCTACAAGGGTATTTCGGTAATTCTACCCTACAGAGGTATTTC
Found at i:58466437 original size:21 final size:21
Alignment explanation
Indices: 58466403--58466445 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 21
58466393 GTGTACGGTC
*
58466403 AAAATGTTTATGAAGTGAAAAA
1 AAAATGTGTATGAA-TGAAAAA
*
58466425 AAAATGTGT-TGAATGACAAA
1 AAAATGTGTATGAATGAAAAA
58466445 A
1 A
58466446 TGATGACCAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 7 0.37
21 4 0.21
22 8 0.42
ACGTcount: A:0.53, C:0.02, G:0.19, T:0.26
Consensus pattern (21 bp):
AAAATGTGTATGAATGAAAAA
Found at i:58466999 original size:27 final size:27
Alignment explanation
Indices: 58466940--58467091 Score: 214
Period size: 27 Copynumber: 5.6 Consensus size: 27
58466930 TAAATTGTAC
*
58466940 AGCACTAAGTGTGCGAGTTGGACTATGT
1 AGCACTAAGTGTGCGAATT-GACTATGT
58466968 AGCACTAAGTGTGCGAATTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* *
58466995 TGCACTAAGTGTGCGAATTAACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* *
58467022 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGA-ATTGACTATGT
* *
58467050 AGCACTAAGTGTGCGAGTTGACTATAT
1 AGCACTAAGTGTGCGAATTGACTATGT
*
58467077 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
58467092 GACTTAATAT
Statistics
Matches: 112, Mismatches: 11, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
27 70 0.62
28 42 0.38
ACGTcount: A:0.27, C:0.14, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAATTGACTATGT
Found at i:58467006 original size:55 final size:55
Alignment explanation
Indices: 58466940--58467091 Score: 225
Period size: 55 Copynumber: 2.8 Consensus size: 55
58466930 TAAATTGTAC
58466940 AGCACTAAGTGTGCGAGTTGGACTATGTAGCACTAAGTGTGCGA-ATTGACTATGT
1 AGCACTAAGTGTGCGAGTT-GACTATGTAGCACTAAGTGTGCGAGATTGACTATGT
* * * * *
58466995 TGCACTAAGTGTGCGAATTAACTATGTAGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGATTGACTATGT
* *
58467050 AGCACTAAGTGTGCGAGTTGACTATATAGCACTGAGTGTGCG
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCG
58467092 GACTTAATAT
Statistics
Matches: 86, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
54 23 0.27
55 63 0.73
ACGTcount: A:0.27, C:0.14, G:0.28, T:0.30
Consensus pattern (55 bp):
AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGATTGACTATGT
Found at i:58467054 original size:82 final size:82
Alignment explanation
Indices: 58466940--58467091 Score: 250
Period size: 82 Copynumber: 1.9 Consensus size: 82
58466930 TAAATTGTAC
* *
58466940 AGCACTAAGTGTGCGAGTTGGACTATGTAGCACTAAGTGTGCGAATTGACTATGTTGCACTAAGT
1 AGCACTAAGTGTGCGAGTTGGACTATGTAGCACTAAGTGTGCGAATTGACTATATAGCACTAAGT
58467005 GTGCGAATTAACTATGT
66 GTGCGAATTAACTATGT
* * * *
58467022 AGCACTAAGTGTGCGAGTTTGATTATGTAGCACTAAGTGTGCGAGTTGACTATATAGCACTGAGT
1 AGCACTAAGTGTGCGAGTTGGACTATGTAGCACTAAGTGTGCGAATTGACTATATAGCACTAAGT
58467087 GTGCG
66 GTGCG
58467092 GACTTAATAT
Statistics
Matches: 64, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
82 64 1.00
ACGTcount: A:0.27, C:0.14, G:0.28, T:0.30
Consensus pattern (82 bp):
AGCACTAAGTGTGCGAGTTGGACTATGTAGCACTAAGTGTGCGAATTGACTATATAGCACTAAGT
GTGCGAATTAACTATGT
Found at i:58469339 original size:20 final size:20
Alignment explanation
Indices: 58469306--58469388 Score: 118
Period size: 20 Copynumber: 4.2 Consensus size: 20
58469296 ATACGTGGGA
58469306 TATGATAT--ACATGAT-TG
1 TATGATATGCACATGATATG
*
58469323 ATATGTTATGCACATGATATG
1 -TATGATATGCACATGATATG
*
58469344 TATGATATGCATATGATATG
1 TATGATATGCACATGATATG
58469364 TATGATATGCACATGATATG
1 TATGATATGCACATGATATG
58469384 TATGA
1 TATGA
58469389 AGTGCTCATG
Statistics
Matches: 58, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
18 7 0.12
20 49 0.84
21 2 0.03
ACGTcount: A:0.35, C:0.07, G:0.19, T:0.39
Consensus pattern (20 bp):
TATGATATGCACATGATATG
Found at i:58469350 original size:9 final size:9
Alignment explanation
Indices: 58469336--58469388 Score: 61
Period size: 9 Copynumber: 5.4 Consensus size: 9
58469326 TGTTATGCAC
58469336 ATGATATGT
1 ATGATATGT
58469345 ATGATATGCAT
1 ATGATATG--T
58469356 ATGATATGT
1 ATGATATGT
*
58469365 ATGATATGCAC
1 ATGATATG--T
58469376 ATGATATGT
1 ATGATATGT
58469385 ATGA
1 ATGA
58469389 AGTGCTCATG
Statistics
Matches: 38, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
9 21 0.55
11 17 0.45
ACGTcount: A:0.36, C:0.06, G:0.21, T:0.38
Consensus pattern (9 bp):
ATGATATGT
Found at i:58469358 original size:11 final size:11
Alignment explanation
Indices: 58469323--58469383 Score: 67
Period size: 11 Copynumber: 5.9 Consensus size: 11
58469313 TACATGATTG
*
58469323 ATATGTTATGC
1 ATATGATATGC
*
58469334 ACATGATATG-
1 ATATGATATGC
58469344 -TATGATATGC
1 ATATGATATGC
58469354 ATATGATATG-
1 ATATGATATGC
58469364 -TATGATATGC
1 ATATGATATGC
*
58469374 ACATGATATG
1 ATATGATATG
58469384 TATGAAGTGC
Statistics
Matches: 42, Mismatches: 4, Indels: 8
0.78 0.07 0.15
Matches are distributed among these distances:
9 17 0.40
11 25 0.60
ACGTcount: A:0.34, C:0.08, G:0.20, T:0.38
Consensus pattern (11 bp):
ATATGATATGC
Found at i:58469398 original size:20 final size:20
Alignment explanation
Indices: 58469315--58469400 Score: 97
Period size: 20 Copynumber: 4.3 Consensus size: 20
58469305 ATATGATATA
* *
58469315 CATGAT-TGATATGTTATGCA
1 CATGATATG-TATGATATGCT
58469335 CATGATATGTATGATATGCAT
1 CATGATATGTATGATATGC-T
*
58469356 -ATGATATGTATGATATGCA
1 CATGATATGTATGATATGCT
58469375 CATGATATGTATGA-AGTGCT
1 CATGATATGTATGATA-TGCT
58469395 CATGAT
1 CATGAT
58469401 GAATTCATAA
Statistics
Matches: 58, Mismatches: 4, Indels: 8
0.83 0.06 0.11
Matches are distributed among these distances:
19 1 0.02
20 55 0.95
21 2 0.03
ACGTcount: A:0.33, C:0.09, G:0.21, T:0.37
Consensus pattern (20 bp):
CATGATATGTATGATATGCT
Found at i:58469400 original size:40 final size:41
Alignment explanation
Indices: 58469315--58469400 Score: 117
Period size: 40 Copynumber: 2.1 Consensus size: 41
58469305 ATATGATATA
*
58469315 CATGATTGATATGTTATGCACATGATATGTATGATATGCAT
1 CATGATTGATATGATATGCACATGATATGTATGATATGCAT
58469356 -ATGATATG-TATGATATGCACATGATATGTATGA-AGTGC-T
1 CATGAT-TGATATGATATGCACATGATATGTATGATA-TGCAT
58469395 CATGAT
1 CATGAT
58469401 GAATTCATAA
Statistics
Matches: 41, Mismatches: 1, Indels: 7
0.84 0.02 0.14
Matches are distributed among these distances:
39 2 0.05
40 37 0.90
41 2 0.05
ACGTcount: A:0.33, C:0.09, G:0.21, T:0.37
Consensus pattern (41 bp):
CATGATTGATATGATATGCACATGATATGTATGATATGCAT
Found at i:58469528 original size:52 final size:52
Alignment explanation
Indices: 58469450--58469589 Score: 209
Period size: 52 Copynumber: 2.8 Consensus size: 52
58469440 GAGGAAGTGC
* *
58469450 AAAAGGGCTTATGCCTCAGTTTATTGAAAAGGGCTTATGCCCTAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG
58469502 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTT-TGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG
*
58469553 AAAAGGGCTT-TGCCCAAG-TTATT-AAAAGAGGC-TATGC
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAG-GGCTTATGC
58469590 ATCCAGATAT
Statistics
Matches: 83, Mismatches: 3, Indels: 7
0.89 0.03 0.08
Matches are distributed among these distances:
48 6 0.07
49 11 0.13
50 7 0.08
51 24 0.29
52 35 0.42
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.28
Consensus pattern (52 bp):
AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG
Found at i:58469547 original size:25 final size:26
Alignment explanation
Indices: 58469450--58469589 Score: 173
Period size: 26 Copynumber: 5.5 Consensus size: 26
58469440 GAGGAAGTGC
*
58469450 AAAAGGGCTTATGCCTCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
* **
58469476 AAAAGGGCTTATGCCCTAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
58469502 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
**
58469528 AAAAGGGCTT-TGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
*
58469553 AAAAGGGCTT-TGCCCAAG-TTATT-
1 AAAAGGGCTTATGCCCCAGTTTATTG
58469576 AAAAGAGGC-TATGC
1 AAAAG-GGCTTATGC
58469590 ATCCAGATAT
Statistics
Matches: 100, Mismatches: 12, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
23 6 0.06
24 9 0.09
25 30 0.30
26 55 0.55
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.28
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATTG
Found at i:58477819 original size:18 final size:20
Alignment explanation
Indices: 58477788--58477829 Score: 52
Period size: 18 Copynumber: 2.2 Consensus size: 20
58477778 AAAATCAGTC
*
58477788 AAAAAAGTCAAAA-T-AATA
1 AAAAAAGACAAAATTCAATA
*
58477806 AAAAAAGACGAAATTCAATA
1 AAAAAAGACAAAATTCAATA
58477826 AAAA
1 AAAA
58477830 TTTAAAAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
18 11 0.55
19 1 0.05
20 8 0.40
ACGTcount: A:0.71, C:0.07, G:0.07, T:0.14
Consensus pattern (20 bp):
AAAAAAGACAAAATTCAATA
Found at i:58483771 original size:40 final size:40
Alignment explanation
Indices: 58483623--58483834 Score: 232
Period size: 40 Copynumber: 5.3 Consensus size: 40
58483613 CATTTGAATG
* * * *
58483623 ATATCCGGGCTAAGTCTCGAAGGCATTTATGCTAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATT
* * * *
58483663 TTATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATT
*
58483703 TTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-T
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG-TGATT
* *
58483743 ATATCCGGGCTAAGACCCGAAGGCATTTGTGTGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG-TGATT
* * * ** *
58483783 ATACCCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATT
58483823 ATATCC-GGCTAA
1 ATATCCGGGCTAA
58483835 ATTCTGAAGA
Statistics
Matches: 153, Mismatches: 16, Indels: 7
0.87 0.09 0.04
Matches are distributed among these distances:
39 7 0.05
40 143 0.93
41 3 0.02
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.29
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATT
Found at i:58491897 original size:40 final size:40
Alignment explanation
Indices: 58491842--58492052 Score: 239
Period size: 40 Copynumber: 5.3 Consensus size: 40
58491832 ATTTGAATGA
*
58491842 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
1 TATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATTT
*
58491882 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
1 TATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATTT
* * *
58491922 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-TA
1 TATCCGGGCTAAGACCCGAAGGCATTTATGCTAG-TGATTT
* * * *
58491962 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTA
1 TATCCGGGCTAAGACCCGAAGGCATTTATGCTAG-TGATTT
* * * * * * *
58492002 TACCCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTA
1 TATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATTT
58492042 TATCC-GGCTAA
1 TATCCGGGCTAA
58492053 ATTCCGAAGA
Statistics
Matches: 156, Mismatches: 12, Indels: 7
0.89 0.07 0.04
Matches are distributed among these distances:
39 7 0.04
40 146 0.94
41 3 0.02
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATTT
Found at i:58494265 original size:25 final size:26
Alignment explanation
Indices: 58494194--58494290 Score: 153
Period size: 26 Copynumber: 3.8 Consensus size: 26
58494184 GAGGAAGTGC
58494194 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
**
58494220 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCG
58494246 AAAAGGGCTT-TGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
*
58494271 AAAAGGG-TTTTGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
58494291 ATTAAAAGAG
Statistics
Matches: 66, Mismatches: 4, Indels: 3
0.90 0.05 0.04
Matches are distributed among these distances:
24 2 0.03
25 30 0.45
26 34 0.52
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.27
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTACCG
Found at i:58494271 original size:51 final size:49
Alignment explanation
Indices: 58494194--58494303 Score: 168
Period size: 51 Copynumber: 2.2 Consensus size: 49
58494184 GAGGAAGTGC
58494194 AAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTTATGCCCCAGTTTATT
1 AAAAGGGCTTATGCCCCAGTTTACCGAAAAGGG-TTATGCCCCAG-TTATT
*
58494245 GAAAAGGGCTT-TGCCCCAGTTTACCGAAAAGGGTTTTGCCCCAGTTATT
1 -AAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGTTATGCCCCAGTTATT
58494294 AAAAGAGGCT
1 AAAAG-GGCT
58494304 AGGCCTCCAG
Statistics
Matches: 56, Mismatches: 1, Indels: 5
0.90 0.02 0.08
Matches are distributed among these distances:
48 5 0.09
49 9 0.16
50 10 0.18
51 22 0.39
52 10 0.18
ACGTcount: A:0.28, C:0.22, G:0.24, T:0.26
Consensus pattern (49 bp):
AAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGTTATGCCCCAGTTATT
Found at i:58503268 original size:30 final size:30
Alignment explanation
Indices: 58503183--58503279 Score: 106
Period size: 30 Copynumber: 3.2 Consensus size: 30
58503173 TAAACTAAAA
* *
58503183 TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
1 TGAGCTAAGGTTTAGCTCGTGAGCTGAAGT
* * * * * *
58503213 TGAGCTGAGGCTAAACTCCTAAGCTGAAGT
1 TGAGCTAAGGTTTAGCTCGTGAGCTGAAGT
58503243 TGAGCTAAGGTTTAGCTCGTGAGCTGAA-T
1 TGAGCTAAGGTTTAGCTCGTGAGCTGAAGT
58503272 ATGAGCTA
1 -TGAGCTA
58503280 GGAGTGAGCT
Statistics
Matches: 52, Mismatches: 14, Indels: 2
0.76 0.21 0.03
Matches are distributed among these distances:
29 1 0.02
30 51 0.98
ACGTcount: A:0.28, C:0.16, G:0.28, T:0.28
Consensus pattern (30 bp):
TGAGCTAAGGTTTAGCTCGTGAGCTGAAGT
Found at i:58505550 original size:30 final size:29
Alignment explanation
Indices: 58505505--58505589 Score: 109
Period size: 30 Copynumber: 2.8 Consensus size: 29
58505495 TTCTTTTGTT
*
58505505 TCAATTTCTTTTTCATCTTCTTTTTCACTC
1 TCAATTTCTTTTTCAT-TTCTTTTTCAATC
58505535 TCAAATTTC-TTTTCATTCTCTTTTTCAATC
1 TC-AATTTCTTTTTCATT-TCTTTTTCAATC
*
58505565 TCATTTTCTTTTTCATTTTCTTTTT
1 TCAATTTCTTTTTCA-TTTCTTTTT
58505590 GCTTTTCAAA
Statistics
Matches: 49, Mismatches: 2, Indels: 8
0.83 0.03 0.14
Matches are distributed among these distances:
29 6 0.12
30 35 0.71
31 8 0.16
ACGTcount: A:0.14, C:0.22, G:0.00, T:0.64
Consensus pattern (29 bp):
TCAATTTCTTTTTCATTTCTTTTTCAATC
Found at i:58505589 original size:18 final size:18
Alignment explanation
Indices: 58505540--58505595 Score: 60
Period size: 18 Copynumber: 3.1 Consensus size: 18
58505530 CACTCTCAAA
*
58505540 TTTC-TTTTCATTCTCTT
1 TTTCATTTTCATTTTCTT
* *
58505557 TTTCAATCTCATTTTCTT
1 TTTCATTTTCATTTTCTT
*
58505575 TTTCATTTTCTTTTTGCTT
1 TTTCATTTTCATTTT-CTT
58505594 TT
1 TT
58505596 CAAAGGCTTT
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
17 4 0.13
18 22 0.71
19 5 0.16
ACGTcount: A:0.09, C:0.20, G:0.02, T:0.70
Consensus pattern (18 bp):
TTTCATTTTCATTTTCTT
Found at i:58505596 original size:12 final size:12
Alignment explanation
Indices: 58505565--58505589 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
58505555 TTTTTCAATC
58505565 TCATTTTCTTTT
1 TCATTTTCTTTT
58505577 TCATTTTCTTTT
1 TCATTTTCTTTT
58505589 T
1 T
58505590 GCTTTTCAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.08, C:0.16, G:0.00, T:0.76
Consensus pattern (12 bp):
TCATTTTCTTTT
Found at i:58505607 original size:12 final size:12
Alignment explanation
Indices: 58505592--58505622 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
58505582 TTCTTTTTGC
58505592 TTTTCAAAGGCT
1 TTTTCAAAGGCT
58505604 TTTTCAAAGGCT
1 TTTTCAAAGGCT
58505616 TTTTCAA
1 TTTTCAA
58505623 GTTCTCTCAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.26, C:0.16, G:0.13, T:0.45
Consensus pattern (12 bp):
TTTTCAAAGGCT
Found at i:58505680 original size:5 final size:5
Alignment explanation
Indices: 58505670--58505726 Score: 55
Period size: 5 Copynumber: 11.0 Consensus size: 5
58505660 CTCTTGCCTC
*
58505670 TCTTT TCTTT T-TATT TCATTT TCTTT T-TCT TCTTT TGCTTTT TCTTT
1 TCTTT TCTTT TCT-TT TC-TTT TCTTT TCTTT TCTTT T-C-TTT TCTTT
58505717 TCTTT TCTTT
1 TCTTT TCTTT
58505727 GTTTTCTCTT
Statistics
Matches: 44, Mismatches: 2, Indels: 12
0.76 0.03 0.21
Matches are distributed among these distances:
4 4 0.09
5 29 0.66
6 6 0.14
7 5 0.11
ACGTcount: A:0.04, C:0.18, G:0.02, T:0.77
Consensus pattern (5 bp):
TCTTT
Found at i:58505710 original size:15 final size:14
Alignment explanation
Indices: 58505670--58505726 Score: 60
Period size: 16 Copynumber: 3.7 Consensus size: 14
58505660 CTCTTGCCTC
*
58505670 TCTTTTCTTTTTATT
1 TCTTTTCTTTTT-CT
58505685 TCATTTTCTTTTTCT
1 TC-TTTTCTTTTTCT
58505700 TCTTTTGCTTTTTCTTT
1 TCTTTT-CTTTTTC--T
58505717 TCTTTTCTTT
1 TCTTTTCTTT
58505727 GTTTTCTCTT
Statistics
Matches: 37, Mismatches: 1, Indels: 7
0.82 0.02 0.16
Matches are distributed among these distances:
14 4 0.11
15 12 0.32
16 14 0.38
17 7 0.19
ACGTcount: A:0.04, C:0.18, G:0.02, T:0.77
Consensus pattern (14 bp):
TCTTTTCTTTTTCT
Found at i:58505727 original size:21 final size:21
Alignment explanation
Indices: 58505670--58505737 Score: 61
Period size: 21 Copynumber: 3.2 Consensus size: 21
58505660 CTCTTGCCTC
* *
58505670 TCTTTTCTTTT-TATTTCATTT
1 TCTTTTCTTTTCT-TTGCTTTT
*
58505691 TCTTTT-TCTTCTTTTGCTTTT
1 TCTTTTCTTTTC-TTTGCTTTT
58505712 TCTTTTCTTTTCTTTG-TTTT
1 TCTTTTCTTTTCTTTGCTTTT
58505732 CTCTTT
1 -TCTTT
58505738 ACAAGAATGT
Statistics
Matches: 39, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
20 7 0.18
21 27 0.69
22 5 0.13
ACGTcount: A:0.03, C:0.18, G:0.03, T:0.76
Consensus pattern (21 bp):
TCTTTTCTTTTCTTTGCTTTT
Found at i:58508348 original size:30 final size:30
Alignment explanation
Indices: 58508263--58508359 Score: 97
Period size: 30 Copynumber: 3.2 Consensus size: 30
58508253 TAAACTAAAA
* *
58508263 TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
1 TGAGCTAAGGTTTAGCTCGTGAGCTGAAGT
* * * * * *
58508293 TGAGCTGAGGCTAAACTCCTAAGCTGAAGT
1 TGAGCTAAGGTTTAGCTCGTGAGCTGAAGT
*
58508323 TGAGCTAAGGTTTAGCTTGTGAGCTGAA-T
1 TGAGCTAAGGTTTAGCTCGTGAGCTGAAGT
58508352 ATGAGCTA
1 -TGAGCTA
58508360 GGAGTGAGCT
Statistics
Matches: 51, Mismatches: 15, Indels: 2
0.75 0.22 0.03
Matches are distributed among these distances:
29 1 0.02
30 50 0.98
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.29
Consensus pattern (30 bp):
TGAGCTAAGGTTTAGCTCGTGAGCTGAAGT
Found at i:58517589 original size:28 final size:27
Alignment explanation
Indices: 58517553--58517639 Score: 68
Period size: 28 Copynumber: 3.0 Consensus size: 27
58517543 AAGTTAACTG
*
58517553 GGCCTTAGCCCATATCAGTATTAATCTA
1 GGCC-TAGCCCATATCAGTATAAATCTA
*
58517581 GGCCATAGCCCCT-TACAGTATCAGAATATACTA
1 GGCC-TAGCCCATAT-CAGTAT---AA-AT-CTA
*
58517614 GGCCTAGCCCATATCAGTATCAATCT
1 GGCCTAGCCCATATCAGTATAAATCT
58517640 GGGCTGTAGC
Statistics
Matches: 47, Mismatches: 5, Indels: 15
0.70 0.07 0.22
Matches are distributed among these distances:
27 3 0.06
28 19 0.40
29 1 0.02
31 1 0.02
32 15 0.32
33 8 0.17
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.28
Consensus pattern (27 bp):
GGCCTAGCCCATATCAGTATAAATCTA
Found at i:58519193 original size:25 final size:22
Alignment explanation
Indices: 58519139--58519193 Score: 56
Period size: 25 Copynumber: 2.3 Consensus size: 22
58519129 TTTCGGCTAG
58519139 AGAAGAAAAGAAGGAGAAAAGA
1 AGAAGAAAAGAAGGAGAAAAGA
* *
58519161 AAATAGAAGAAGAGAGGAGAAGAGA
1 AGA-AGAA-AAGA-AGGAGAAAAGA
58519186 AGGAAGAA
1 A-GAAGAA
58519194 TTCGACACTC
Statistics
Matches: 26, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
22 2 0.08
23 4 0.15
24 4 0.15
25 15 0.58
26 1 0.04
ACGTcount: A:0.64, C:0.00, G:0.35, T:0.02
Consensus pattern (22 bp):
AGAAGAAAAGAAGGAGAAAAGA
Found at i:58519826 original size:3 final size:3
Alignment explanation
Indices: 58519818--58519852 Score: 52
Period size: 3 Copynumber: 11.7 Consensus size: 3
58519808 AAACATACGA
* *
58519818 AAT AAT AAT AAT AAA AAT AAT AAT AAT AAT GAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
58519853 ATCCAAATTA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.69, C:0.00, G:0.03, T:0.29
Consensus pattern (3 bp):
AAT
Found at i:58519837 original size:15 final size:15
Alignment explanation
Indices: 58519817--58519846 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
58519807 CAAACATACG
58519817 AAATAATAATAATAA
1 AAATAATAATAATAA
58519832 AAATAATAATAATAA
1 AAATAATAATAATAA
58519847 TGATAAATCC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (15 bp):
AAATAATAATAATAA
Found at i:58521290 original size:55 final size:53
Alignment explanation
Indices: 58521226--58521354 Score: 150
Period size: 53 Copynumber: 2.4 Consensus size: 53
58521216 AGGAAATCAT
* * *
58521226 GTAAGACCATGTCAAGACATGGCATTGATAAACTACTATAAGGCAAGGATCCCAC
1 GTAAGACCATGTCAAGACATGGCAATGAT-AACT-CTATAAGGCAAGCATACCAC
* * * * * *
58521281 GTAAGACCATGCCAAGGCATGGCAATGGTGAGTTTATAAGGCAAGCATACCAC
1 GTAAGACCATGTCAAGACATGGCAATGATAACTCTATAAGGCAAGCATACCAC
*
58521334 ATAAGACCATGTCAAGACATG
1 GTAAGACCATGTCAAGACATG
58521355 AAAATGGTAA
Statistics
Matches: 62, Mismatches: 12, Indels: 2
0.82 0.16 0.03
Matches are distributed among these distances:
53 35 0.56
54 2 0.03
55 25 0.40
ACGTcount: A:0.37, C:0.21, G:0.22, T:0.19
Consensus pattern (53 bp):
GTAAGACCATGTCAAGACATGGCAATGATAACTCTATAAGGCAAGCATACCAC
Found at i:58521341 original size:53 final size:53
Alignment explanation
Indices: 58521262--58521369 Score: 144
Period size: 53 Copynumber: 2.0 Consensus size: 53
58521252 GATAAACTAC
* * * * ** *
58521262 TATAAGGCAAGGATCCCACGTAAGACCATGCCAAGGCATGGCAATGGTGAGTT
1 TATAAGGCAAGCATACCACATAAGACCATGCCAAGACATGAAAATGGTAAGTT
*
58521315 TATAAGGCAAGCATACCACATAAGACCATGTCAAGACATGAAAATGGTAAGTT
1 TATAAGGCAAGCATACCACATAAGACCATGCCAAGACATGAAAATGGTAAGTT
58521368 TA
1 TA
58521370 GAAAGGAAAG
Statistics
Matches: 47, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
53 47 1.00
ACGTcount: A:0.38, C:0.19, G:0.23, T:0.20
Consensus pattern (53 bp):
TATAAGGCAAGCATACCACATAAGACCATGCCAAGACATGAAAATGGTAAGTT
Found at i:58524204 original size:734 final size:746
Alignment explanation
Indices: 58522766--58525767 Score: 4958
Period size: 734 Copynumber: 4.0 Consensus size: 746
58522756 GGTCACCTTG
*
58522766 GAGAATGAAGAGATAGCACACCATACATGAATGGAAACTTTCATGAACCTTAAAGACATTGAATA
1 GAGAATGAAGAGATAGCACACCATACATGAATGGAAACATTCATGAACCTTAAAGACATTGAATA
58522831 TGGTCATACATGCACTTGGCCGAACATGCACCTAAGAGATTCAAGTCCCCCAACCGTCCATGCAC
66 TGGTCATACATGCACTTGGCCGAACATGCACCTAAGAGATTCAAGTCCCCCAACCGTCCATGCAC
58522896 CTTC-AAATTCATGCTTGCTTTTAATCTCCATATGTCCATTGCGTTTCTACAAGAAATGTGAACA
131 CTTCAAAATTCATGCTTGCTTTTAATCTCCATATGTCCATTGCGTTTCTACAAGAAATGTGAACA
58522960 GAATTAATTCAAACTAATGTGAACACAAATATCAACATTAAATTCGGTTATGACAAATTTAATTA
196 GAATTAATTCAAACTAATGTGAACACAAATATCAACATTAAATTCGGTTATGACAAATTTAATTA
*
58523025 TCATCAATAAACACTTTTAAGACATACTTAATATAACTAATGTGAACTAAATTTAATATGTAGGA
261 TCATCAATAAACACTTTTAAGACATACTTAATATAGCTAATGTGAACTAAATTTAATATGTAGGA
*
58523090 TATTAATTAGCTAATTATTGAACTTATTAATTAAAAAGTCAATAGTAGTCAAATGAATTCAAAGT
326 TATTAATTAACTAATTATTGAACTTATTAATTAAAAAGTCAATAGTAGTCAAATGAATTCAAAGT
58523155 GAACTCCACGAGCTGATGGTTAATTCATGAGCTAAACCCGAG-TGGGCTTAAACTCGTGAGCTGA
391 GAACTCCACGAGCTGATGGTTAATTCATGAGCTAAACCCGAGCTGGGCTTAAACTCGTGAGCTGA
*
58523219 TAATGAGCTGGTCCCGAGCTAATGAGCTGGTGTGGAGCTATATGGGAGCTAACTTGAACTGAAGG
456 TAATGAGCTGGTCCCGAGCTAATGAGCTGGTGTGGAGCTACATGGGAGCTAACTTGAACTGAAGG
* *
58523284 TGAGCTCAGTGAGCTGAACTGAACTTGTAGAAAAGTTCGGCATGGATTTCCAAAATGGCCACTAA
521 TGAGCCCGGTGAGCTGAACTGAACTTGTAGAAAAGTTCGGCATGGATTTCCAAAATGGCCACTAA
*
58523349 CTAGTTCGATAGGTCTAGCATTGACATCATCCCACACATGCTGAACTAAAGCTATAACGGCTTCT
586 CTGGTTCGATAGGTCTAGCATTGACATCATCCCACACATGCTGAACTAAAGCTATAACGGCTTCT
58523414 TTAAATTGTTTTGCACGAGCCCTTGTGAT-GGCCCTTGAGGTAGCACCATC-GATCTC-GCTTGG
651 TTAAATTGTTTTGCACGAGCCCTTGTGATCGGCCCTTGAGGTAGCACCATCGGATCTCGGCTTGG
58523476 AC-TGACTTATG-GA-G-C-TGATGT-A-CA
716 ACTTGACTTATGTGATGTCTTGATGTCAGCA
58523500 GAGAATGAAGAGATAGCACACCATACATGAATGGAAACATTCATGAACCTTAAAGACATTGAATA
1 GAGAATGAAGAGATAGCACACCATACATGAATGGAAACATTCATGAACCTTAAAGACATTGAATA
*
58523565 TGGTCACACATGCACTTGGCCGAACATGCACCTAAGAGATTCAAGT-CCCCAACCGTCCATGCAC
66 TGGTCATACATGCACTTGGCCGAACATGCACCTAAGAGATTCAAGTCCCCCAACCGTCCATGCAC
58523629 CTTCAAAATTCATGCTTGCTTTTAATCTCCATATGTCCATTGCGTTTCTACAAGAAATGTGAACA
131 CTTCAAAATTCATGCTTGCTTTTAATCTCCATATGTCCATTGCGTTTCTACAAGAAATGTGAACA
* *
58523694 -AATTAATTCAAACTAATATGAACACAAATATCAACATTAAATTCAGTTATGACAAATTTAATTA
196 GAATTAATTCAAACTAATGTGAACACAAATATCAACATTAAATTCGGTTATGACAAATTTAATTA
* *
58523758 TCATCAAGAAACACTTTTAAGACATACTTAATATAGCTAACGTGAACTAAATTTAATATGTAGGA
261 TCATCAATAAACACTTTTAAGACATACTTAATATAGCTAATGTGAACTAAATTTAATATGTAGGA
58523823 TATTAATTAACTAATTATTGAACTTATTAATTAAAAAGTCAATAGTAGTCAAATGAATTCAAAGT
326 TATTAATTAACTAATTATTGAACTTATTAATTAAAAAGTCAATAGTAGTCAAATGAATTCAAAGT
58523888 GAACTCCACGAGCTGATGGTTAATTCATGAGCTAAACCCGAGCTGGGCTTAAACTCGTGAGCTGA
391 GAACTCCACGAGCTGATGGTTAATTCATGAGCTAAACCCGAGCTGGGCTTAAACTCGTGAGCTGA
*
58523953 TAATGAGCTGGTCCCGAGCTAATGAGCTAGTGTGGAGCTACATGGGAGCTAACTTGAACTGAAGG
456 TAATGAGCTGGTCCCGAGCTAATGAGCTGGTGTGGAGCTACATGGGAGCTAACTTGAACTGAAGG
*
58524018 TGAGCCCGGTGAGTTGAACTGAACTTGTAGAAAAGTTCGGCATGGATTTCCAAAATGGCCACTAA
521 TGAGCCCGGTGAGCTGAACTGAACTTGTAGAAAAGTTCGGCATGGATTTCCAAAATGGCCACTAA
58524083 CTGGTTCGATAGGTCTAGCATTGACATCAT-CCACACATGCTGAACTAAAGCTATAACGGCTTCT
586 CTGGTTCGATAGGTCTAGCATTGACATCATCCCACACATGCTGAACTAAAGCTATAACGGCTTCT
*
58524147 TTAAATTGTTTTACACGAG-CCTTGTGATCGGCCCTTGAGGTAGCACCATCGGATCTC-GCTTGG
651 TTAAATTGTTTTGCACGAGCCCTTGTGATCGGCCCTTGAGGTAGCACCATCGGATCTCGGCTTGG
58524210 ACTTGACTTATGGAAGCCGTGATCGTATCAGTGTGAGTGTCCTTTGGCCGAATGGTCA
716 ACTTGACTTAT-------GTGAT-G--TC--T-TGA-TG-----T---C--A--G-CA
58524268 CCTTGGAGAATGAAGAGATAGCACACCATACATGAATGGAAACATTCATGAACCTTAAA-ACATT
1 -----GAGAATGAAGAGATAGCACACCATACATGAATGGAAACATTCATGAACCTTAAAGACATT
*
58524332 GAATATGGTCATACATGCACTTGGCCGAACATGTACCTAAGAGATTCAAGTCCCCCAACCGTCCA
61 GAATATGGTCATACATGCACTTGGCCGAACATGCACCTAAGAGATTCAAGTCCCCCAACCGTCCA
*
58524397 TGCACCTTTAAAATTCATGCTTGCTTTTAATCTCCATATGTCCATTGCGTTTCTACAAGAAATGT
126 TGCACCTTCAAAATTCATGCTTGCTTTTAATCTCCATATGTCCATTGCGTTTCTACAAGAAATGT
58524462 GAACAGAATTAATTCAAACTAATGTGAACACAAATATCAACATTAAATTCGGTTATGACAAATTT
191 GAACAGAATTAATTCAAACTAATGTGAACACAAATATCAACATTAAATTCGGTTATGACAAATTT
58524527 AATTATCATCAATAAACACTTTTAAGACATACTTAATATAGCTAATGTGAACTAAATTTAATATG
256 AATTATCATCAATAAACACTTTTAAGACATACTTAATATAGCTAATGTGAACTAAATTTAATATG
**
58524592 TAGGATATTAATTAACTGGTTATTGAAC-TATTAATTAAAAAGTCAATAGTAGTCAAATGAATTC
321 TAGGATATTAATTAACTAATTATTGAACTTATTAATTAAAAAGTCAATAGTAGTCAAATGAATTC
*
58524656 AAAGTGAAAT-CACGAGCTGATGGTTAATTCATGAGCTAAACCCGAGCT-GGC-TAAACTCGTGA
386 AAAGTGAACTCCACGAGCTGATGGTTAATTCATGAGCTAAACCCGAGCTGGGCTTAAACTCGTGA
58524718 GCTGATAATGAGCTGGTCCCGAGCTAATGAGCTGGTGTGGAGCTACATGGGAGCTAACTTGAACT
451 GCTGATAATGAGCTGGTCCCGAGCTAATGAGCTGGTGTGGAGCTACATGGGAGCTAACTTGAACT
*
58524783 GAAGTTGAGCCCGGTGAGCT-AACTGAACTTGTAG-AAAGTTCGGCATGGATTTCCAAAATGGCC
516 GAAGGTGAGCCCGGTGAGCTGAACTGAACTTGTAGAAAAGTTCGGCATGGATTTCCAAAATGGCC
58524846 ACTAACTGGTTCGATAGGTCTAGCATTGACATCATCCCACACATGCTGAACTAAAGCTATAACGG
581 ACTAACTGGTTCGATAGGTCTAGCATTGACATCATCCCACACATGCTGAACTAAAGCTATAACGG
58524911 CTTCTTTAAATTGTTTTGCACGAGCCCTTGTGATCGGCCCTTGAGGTAGCACCATCGGATCTCGG
646 CTTCTTTAAATTGTTTTGCACGAGCCCTTGTGATCGGCCCTTGAGGTAGCACCATCGGATCTCGG
*
58524976 CTTGGACTTGATTTATGGGAACCGTGATCGTATCAGTGTGAGTGTCCTTTGGCCGAATGTCA
711 CTTGGACTTGACTTAT-------GTGAT-G--TC--T-TGA-TG-----T---C--A-G-CA
58525038 CCTTGGAGAATGAAGAGATAGCACACCATACATGAATGGAAACATTCATGAACCTTAAAGACATT
1 -----GAGAATGAAGAGATAGCACACCATACATGAATGGAAACATTCATGAACCTTAAAGACATT
*
58525103 GAATATGGTCATACATGCACTTGGCCGAACATGCACCTAAGAGATTCAAGTCCCCCAACTGTCCA
61 GAATATGGTCATACATGCACTTGGCCGAACATGCACCTAAGAGATTCAAGTCCCCCAACCGTCCA
58525168 TGCACCTTCAAAATTCATGCTTGCTTTTAATCTCCATATGTCCATTGCGTTTCTACAAGAAATGT
126 TGCACCTTCAAAATTCATGCTTGCTTTTAATCTCCATATGTCCATTGCGTTTCTACAAGAAATGT
*
58525233 GAACAGAATTAATTCAAACTAATGTGAACACAAATATCAACATT-AATTTGGTTATGACAAATTT
191 GAACAGAATTAATTCAAACTAATGTGAACACAAATATCAACATTAAATTCGGTTATGACAAATTT
*
58525297 AATTATCATTAATAAACACTTTTAAGACATACTTAATATAGCTAATGTGAACTAAATTTAATATG
256 AATTATCATCAATAAACACTTTTAAGACATACTTAATATAGCTAATGTGAACTAAATTTAATATG
58525362 TAGGATATTAATTAACTAATTATTGAACTTATTAATTAAAAAGTCAATAGTAGTCAAATGAATTC
321 TAGGATATTAATTAACTAATTATTGAACTTATTAATTAAAAAGTCAATAGTAGTCAAATGAATTC
*
58525427 AAAGTGAACTCCACGAGCTGATGGTTAATTCATGAGCTAAACCCGAGCTGGGCCTAAACTCGTGA
386 AAAGTGAACTCCACGAGCTGATGGTTAATTCATGAGCTAAACCCGAGCTGGGCTTAAACTCGTGA
*
58525492 GCTGATAATGAGCTGGTCCCGAGCTAATGAGCTGGTGTGGAGCTACATAGGAGCTAACTTGAACT
451 GCTGATAATGAGCTGGTCCCGAGCTAATGAGCTGGTGTGGAGCTACATGGGAGCTAACTTGAACT
* *
58525557 GAAGGTGAGCTCGGTGAGCTGAACTGAACTTCTAGAAAAGTTCGGCATGGATTTCCAAAATGGCC
516 GAAGGTGAGCCCGGTGAGCTGAACTGAACTTGTAGAAAAGTTCGGCATGGATTTCCAAAATGGCC
* **
58525622 ACTAACTTGTTCGATA-GTCTAGCATTGACATCATCCCACACATGCTGAACTAAAGCTATAATAG
581 ACTAACTGGTTCGATAGGTCTAGCATTGACATCATCCCACACATGCTGAACTAAAGCTATAACGG
*
58525686 CTTCTTTAAATTGTTTTGCACGAGCCCTTGTGATCGGCCCTTGAGGTAGCACCATCAGATCTCGG
646 CTTCTTTAAATTGTTTTGCACGAGCCCTTGTGATCGGCCCTTGAGGTAGCACCATCGGATCTCGG
58525751 CTTGGACTTGACTTATG
711 CTTGGACTTGACTTATG
58525768 GGAAGCTGTG
Statistics
Matches: 2163, Mismatches: 50, Indels: 76
0.94 0.02 0.03
Matches are distributed among these distances:
732 9 0.00
733 325 0.15
734 359 0.17
735 8 0.00
742 1 0.00
743 2 0.00
745 1 0.00
748 1 0.00
752 3 0.00
753 2 0.00
758 1 0.00
764 1 0.00
768 67 0.03
769 66 0.03
770 303 0.14
771 279 0.13
772 130 0.06
773 184 0.09
774 239 0.11
775 138 0.06
776 44 0.02
ACGTcount: A:0.33, C:0.19, G:0.19, T:0.29
Consensus pattern (746 bp):
GAGAATGAAGAGATAGCACACCATACATGAATGGAAACATTCATGAACCTTAAAGACATTGAATA
TGGTCATACATGCACTTGGCCGAACATGCACCTAAGAGATTCAAGTCCCCCAACCGTCCATGCAC
CTTCAAAATTCATGCTTGCTTTTAATCTCCATATGTCCATTGCGTTTCTACAAGAAATGTGAACA
GAATTAATTCAAACTAATGTGAACACAAATATCAACATTAAATTCGGTTATGACAAATTTAATTA
TCATCAATAAACACTTTTAAGACATACTTAATATAGCTAATGTGAACTAAATTTAATATGTAGGA
TATTAATTAACTAATTATTGAACTTATTAATTAAAAAGTCAATAGTAGTCAAATGAATTCAAAGT
GAACTCCACGAGCTGATGGTTAATTCATGAGCTAAACCCGAGCTGGGCTTAAACTCGTGAGCTGA
TAATGAGCTGGTCCCGAGCTAATGAGCTGGTGTGGAGCTACATGGGAGCTAACTTGAACTGAAGG
TGAGCCCGGTGAGCTGAACTGAACTTGTAGAAAAGTTCGGCATGGATTTCCAAAATGGCCACTAA
CTGGTTCGATAGGTCTAGCATTGACATCATCCCACACATGCTGAACTAAAGCTATAACGGCTTCT
TTAAATTGTTTTGCACGAGCCCTTGTGATCGGCCCTTGAGGTAGCACCATCGGATCTCGGCTTGG
ACTTGACTTATGTGATGTCTTGATGTCAGCA
Found at i:58525244 original size:771 final size:778
Alignment explanation
Indices: 58523500--58525786 Score: 4210
Period size: 770 Copynumber: 3.0 Consensus size: 778
58523490 CTGATGTACA
58523500 GAGAATGAAGAGATAGCACACCATACATGAATGGAAACATTCATGAACCTTAAAGACATTGAATA
1 GAGAATGAAGAGATAGCACACCATACATGAATGGAAACATTCATGAACCTTAAAGACATTGAATA
*
58523565 TGGTCACACATGCACTTGGCCGAACATGCACCTAAGAGATTCAAGT-CCCCAACCGTCCATGCAC
66 TGGTCATACATGCACTTGGCCGAACATGCACCTAAGAGATTCAAGTCCCCCAACCGTCCATGCAC
58523629 CTTCAAAATTCATGCTTGCTTTTAATCTCCATATGTCCATTGCGTTTCTACAAGAAATGTGAACA
131 CTTCAAAATTCATGCTTGCTTTTAATCTCCATATGTCCATTGCGTTTCTACAAGAAATGTGAACA
* *
58523694 -AATTAATTCAAACTAATATGAACACAAATATCAACATTAAATTCAGTTATGACAAATTTAATTA
196 GAATTAATTCAAACTAATGTGAACACAAATATCAACATTAAATTCGGTTATGACAAATTTAATTA
* *
58523758 TCATCAAGAAACACTTTTAAGACATACTTAATATAGCTAACGTGAACTAAATTTAATATGTAGGA
261 TCATCAATAAACACTTTTAAGACATACTTAATATAGCTAATGTGAACTAAATTTAATATGTAGGA
58523823 TATTAATTAACTAATTATTGAACTTATTAATTAAAAAGTCAATAGTAGTCAAATGAATTCAAAGT
326 TATTAATTAACTAATTATTGAACTTATTAATTAAAAAGTCAATAGTAGTCAAATGAATTCAAAGT
58523888 GAACTCCACGAGCTGATGGTTAATTCATGAGCTAAACCCGAGCTGGGCTTAAACTCGTGAGCTGA
391 GAACTCCACGAGCTGATGGTTAATTCATGAGCTAAACCCGAGCTGGGC-TAAACTCGTGAGCTGA
*
58523953 TAATGAGCTGGTCCCGAGCTAATGAGCTAGTGTGGAGCTACATGGGAGCTAACTTGAACTGAAGG
455 TAATGAGCTGGTCCCGAGCTAATGAGCTGGTGTGGAGCTACATGGGAGCTAACTTGAACTGAAGG
*
58524018 TGAGCCCGGTGAGTTGAACTGAACTTGTAGAAAAGTTCGGCATGGATTTCCAAAATGGCCACTAA
520 TGAGCCCGGTGAGCTGAACTGAACTTGTAGAAAAGTTCGGCATGGATTTCCAAAATGGCCACTAA
58524083 CTGGTTCGATAGGTCTAGCATTGACATCAT-CCACACATGCTGAACTAAAGCTATAACGGCTTCT
585 CTGGTTCGATAGGTCTAGCATTGACATCATCCCACACATGCTGAACTAAAGCTATAACGGCTTCT
*
58524147 TTAAATTGTTTTACACGAG-CCTTGTGATCGGCCCTTGAGGTAGCACCATCGGATCTC-GCTTGG
650 TTAAATTGTTTTGCACGAGCCCTTGTGATCGGCCCTTGAGGTAGCACCATCGGATCTCGGCTTGG
58524210 ACTTGACTTAT-GGAAGCCGTGATCGTATCAGTGTGAGTGTCCTTTGGCCGAATGGTCACCTTG
715 ACTTGACTTATGGGAAGCCGTGATCGTATCAGTGTGAGTGTCCTTTGGCCGAATGGTCACCTTG
58524273 GAGAATGAAGAGATAGCACACCATACATGAATGGAAACATTCATGAACCTTAAA-ACATTGAATA
1 GAGAATGAAGAGATAGCACACCATACATGAATGGAAACATTCATGAACCTTAAAGACATTGAATA
*
58524337 TGGTCATACATGCACTTGGCCGAACATGTACCTAAGAGATTCAAGTCCCCCAACCGTCCATGCAC
66 TGGTCATACATGCACTTGGCCGAACATGCACCTAAGAGATTCAAGTCCCCCAACCGTCCATGCAC
*
58524402 CTTTAAAATTCATGCTTGCTTTTAATCTCCATATGTCCATTGCGTTTCTACAAGAAATGTGAACA
131 CTTCAAAATTCATGCTTGCTTTTAATCTCCATATGTCCATTGCGTTTCTACAAGAAATGTGAACA
58524467 GAATTAATTCAAACTAATGTGAACACAAATATCAACATTAAATTCGGTTATGACAAATTTAATTA
196 GAATTAATTCAAACTAATGTGAACACAAATATCAACATTAAATTCGGTTATGACAAATTTAATTA
58524532 TCATCAATAAACACTTTTAAGACATACTTAATATAGCTAATGTGAACTAAATTTAATATGTAGGA
261 TCATCAATAAACACTTTTAAGACATACTTAATATAGCTAATGTGAACTAAATTTAATATGTAGGA
**
58524597 TATTAATTAACTGGTTATTGAAC-TATTAATTAAAAAGTCAATAGTAGTCAAATGAATTCAAAGT
326 TATTAATTAACTAATTATTGAACTTATTAATTAAAAAGTCAATAGTAGTCAAATGAATTCAAAGT
*
58524661 GAAAT-CACGAGCTGATGGTTAATTCATGAGCTAAACCCGAGCT-GGCTAAACTCGTGAGCTGAT
391 GAACTCCACGAGCTGATGGTTAATTCATGAGCTAAACCCGAGCTGGGCTAAACTCGTGAGCTGAT
*
58524724 AATGAGCTGGTCCCGAGCTAATGAGCTGGTGTGGAGCTACATGGGAGCTAACTTGAACTGAAGTT
456 AATGAGCTGGTCCCGAGCTAATGAGCTGGTGTGGAGCTACATGGGAGCTAACTTGAACTGAAGGT
58524789 GAGCCCGGTGAGCT-AACTGAACTTGTAG-AAAGTTCGGCATGGATTTCCAAAATGGCCACTAAC
521 GAGCCCGGTGAGCTGAACTGAACTTGTAGAAAAGTTCGGCATGGATTTCCAAAATGGCCACTAAC
58524852 TGGTTCGATAGGTCTAGCATTGACATCATCCCACACATGCTGAACTAAAGCTATAACGGCTTCTT
586 TGGTTCGATAGGTCTAGCATTGACATCATCCCACACATGCTGAACTAAAGCTATAACGGCTTCTT
58524917 TAAATTGTTTTGCACGAGCCCTTGTGATCGGCCCTTGAGGTAGCACCATCGGATCTCGGCTTGGA
651 TAAATTGTTTTGCACGAGCCCTTGTGATCGGCCCTTGAGGTAGCACCATCGGATCTCGGCTTGGA
*
58524982 CTTGATTTATGGGAA-CCGTGATCGTATCAGTGTGAGTGTCCTTTGGCCGAAT-GTCACCTTG
716 CTTGACTTATGGGAAGCCGTGATCGTATCAGTGTGAGTGTCCTTTGGCCGAATGGTCACCTTG
58525043 GAGAATGAAGAGATAGCACACCATACATGAATGGAAACATTCATGAACCTTAAAGACATTGAATA
1 GAGAATGAAGAGATAGCACACCATACATGAATGGAAACATTCATGAACCTTAAAGACATTGAATA
*
58525108 TGGTCATACATGCACTTGGCCGAACATGCACCTAAGAGATTCAAGTCCCCCAACTGTCCATGCAC
66 TGGTCATACATGCACTTGGCCGAACATGCACCTAAGAGATTCAAGTCCCCCAACCGTCCATGCAC
58525173 CTTCAAAATTCATGCTTGCTTTTAATCTCCATATGTCCATTGCGTTTCTACAAGAAATGTGAACA
131 CTTCAAAATTCATGCTTGCTTTTAATCTCCATATGTCCATTGCGTTTCTACAAGAAATGTGAACA
*
58525238 GAATTAATTCAAACTAATGTGAACACAAATATCAACATT-AATTTGGTTATGACAAATTTAATTA
196 GAATTAATTCAAACTAATGTGAACACAAATATCAACATTAAATTCGGTTATGACAAATTTAATTA
*
58525302 TCATTAATAAACACTTTTAAGACATACTTAATATAGCTAATGTGAACTAAATTTAATATGTAGGA
261 TCATCAATAAACACTTTTAAGACATACTTAATATAGCTAATGTGAACTAAATTTAATATGTAGGA
58525367 TATTAATTAACTAATTATTGAACTTATTAATTAAAAAGTCAATAGTAGTCAAATGAATTCAAAGT
326 TATTAATTAACTAATTATTGAACTTATTAATTAAAAAGTCAATAGTAGTCAAATGAATTCAAAGT
58525432 GAACTCCACGAGCTGATGGTTAATTCATGAGCTAAACCCGAGCTGGGCCTAAACTCGTGAGCTGA
391 GAACTCCACGAGCTGATGGTTAATTCATGAGCTAAACCCGAGCTGGG-CTAAACTCGTGAGCTGA
*
58525497 TAATGAGCTGGTCCCGAGCTAATGAGCTGGTGTGGAGCTACATAGGAGCTAACTTGAACTGAAGG
455 TAATGAGCTGGTCCCGAGCTAATGAGCTGGTGTGGAGCTACATGGGAGCTAACTTGAACTGAAGG
* *
58525562 TGAGCTCGGTGAGCTGAACTGAACTTCTAGAAAAGTTCGGCATGGATTTCCAAAATGGCCACTAA
520 TGAGCCCGGTGAGCTGAACTGAACTTGTAGAAAAGTTCGGCATGGATTTCCAAAATGGCCACTAA
* **
58525627 CTTGTTCGATA-GTCTAGCATTGACATCATCCCACACATGCTGAACTAAAGCTATAATAGCTTCT
585 CTGGTTCGATAGGTCTAGCATTGACATCATCCCACACATGCTGAACTAAAGCTATAACGGCTTCT
*
58525691 TTAAATTGTTTTGCACGAGCCCTTGTGATCGGCCCTTGAGGTAGCACCATCAGATCTCGGCTTGG
650 TTAAATTGTTTTGCACGAGCCCTTGTGATCGGCCCTTGAGGTAGCACCATCGGATCTCGGCTTGG
*
58525756 ACTTGACTTATGGGAAGCTGTGATCGTATCA
715 ACTTGACTTATGGGAAGCCGTGATCGTATCA
58525787 ACCATAGCCG
Statistics
Matches: 1467, Mismatches: 33, Indels: 25
0.96 0.02 0.02
Matches are distributed among these distances:
768 64 0.04
769 66 0.04
770 303 0.21
771 277 0.19
772 134 0.09
773 183 0.12
774 240 0.16
775 143 0.10
776 57 0.04
ACGTcount: A:0.33, C:0.19, G:0.19, T:0.29
Consensus pattern (778 bp):
GAGAATGAAGAGATAGCACACCATACATGAATGGAAACATTCATGAACCTTAAAGACATTGAATA
TGGTCATACATGCACTTGGCCGAACATGCACCTAAGAGATTCAAGTCCCCCAACCGTCCATGCAC
CTTCAAAATTCATGCTTGCTTTTAATCTCCATATGTCCATTGCGTTTCTACAAGAAATGTGAACA
GAATTAATTCAAACTAATGTGAACACAAATATCAACATTAAATTCGGTTATGACAAATTTAATTA
TCATCAATAAACACTTTTAAGACATACTTAATATAGCTAATGTGAACTAAATTTAATATGTAGGA
TATTAATTAACTAATTATTGAACTTATTAATTAAAAAGTCAATAGTAGTCAAATGAATTCAAAGT
GAACTCCACGAGCTGATGGTTAATTCATGAGCTAAACCCGAGCTGGGCTAAACTCGTGAGCTGAT
AATGAGCTGGTCCCGAGCTAATGAGCTGGTGTGGAGCTACATGGGAGCTAACTTGAACTGAAGGT
GAGCCCGGTGAGCTGAACTGAACTTGTAGAAAAGTTCGGCATGGATTTCCAAAATGGCCACTAAC
TGGTTCGATAGGTCTAGCATTGACATCATCCCACACATGCTGAACTAAAGCTATAACGGCTTCTT
TAAATTGTTTTGCACGAGCCCTTGTGATCGGCCCTTGAGGTAGCACCATCGGATCTCGGCTTGGA
CTTGACTTATGGGAAGCCGTGATCGTATCAGTGTGAGTGTCCTTTGGCCGAATGGTCACCTTG
Found at i:58528761 original size:29 final size:29
Alignment explanation
Indices: 58528728--58528786 Score: 77
Period size: 29 Copynumber: 2.0 Consensus size: 29
58528718 GTTTTCATGA
58528728 TTATGAAC-TTAT-ATTTTATTTTGGGACTT
1 TTATGAACTTTATGATTTTA-TTTGGG-CTT
*
58528757 TTATGGACTTTATGATTTTATTTGGGCTT
1 TTATGAACTTTATGATTTTATTTGGGCTT
58528786 T
1 T
58528787 AATTTTTGTG
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
29 11 0.41
30 10 0.37
31 6 0.22
ACGTcount: A:0.20, C:0.07, G:0.17, T:0.56
Consensus pattern (29 bp):
TTATGAACTTTATGATTTTATTTGGGCTT
Found at i:58530114 original size:46 final size:46
Alignment explanation
Indices: 58530047--58530139 Score: 177
Period size: 46 Copynumber: 2.0 Consensus size: 46
58530037 GAACGTCCTA
58530047 AATACAAGTGTTTATTTATATGCCATCCATTGAACCTTAATCATGC
1 AATACAAGTGTTTATTTATATGCCATCCATTGAACCTTAATCATGC
*
58530093 AATACAAGTGTTTGTTTATATGCCATCCATTGAACCTTAATCATGC
1 AATACAAGTGTTTATTTATATGCCATCCATTGAACCTTAATCATGC
58530139 A
1 A
58530140 TGCACCCTTC
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 46 1.00
ACGTcount: A:0.32, C:0.19, G:0.12, T:0.37
Consensus pattern (46 bp):
AATACAAGTGTTTATTTATATGCCATCCATTGAACCTTAATCATGC
Found at i:58535493 original size:401 final size:401
Alignment explanation
Indices: 58534750--58536750 Score: 3770
Period size: 401 Copynumber: 5.0 Consensus size: 401
58534740 AAATACATGT
58534750 TGATACGAACCGCCTCGGGGAGAGTCGAGTCGTATACGAGTTTGCCCGATCGTCTACGATAAAGT
1 TGATACGAACCGCCTCGGGGAGAGTCGAGTCGTATACGAGTTTGCCCGATCGTCTACGATAAAGT
* *
58534815 ATCGTTCAGTTTGTTCAAAAAAACTGTTTCTAAATAAATTATGCGGAAGCTATTCAAGGGGTTCA
66 ATCGTTCGGTTTGTTCAAAAAAAATGTTTCTAAATAAATTATGCGGAAGCTATTCAAGGGGTTCA
58534880 AATGAAGGGGTTAAAATATGAATATTAAGGTTCGGTTTAAAGTAAATGAAAGAATGGAAAGAAGG
131 AATGAAGGGGTTAAAATATGAATATTAAGGTTCGGTTTAAAGTAAATGAAAGAATGGAAAGAAGG
58534945 AACTCAAAAGCAAGCACGAACCAATATTAGAAAATATCGACCCAAATGCTTATAGGCTTTCAAGG
196 AACTCAAAAGCAAGCACGAACCAATATTAGAAAATATCGACCCAAATGCTTATAGGCTTTCAAGG
*
58535010 TGAAAATGAAAATGATAGAACCTCGACCCACTACTTAACAAAGTAGGAACCTCGGTATATGGGTG
261 CGAAAATGAAAATGATAGAACCTCGACCCACTACTTAACAAAGTAGGAACCTCGGTATATGGGTG
58535075 AACGAAACAGGGTTGACGCCACTACTAGGTAGATAAGTCAACAAAGTCTCAAACAAAGTTTAGAG
326 AACGAAACAGGGTTGACGCCACTACTAGGTAGATAAGTCAACAAAGTCTCAAACAAAGTTTAGAG
58535140 AAGAAAATCAA
391 AAGAAAATCAA
58535151 TGATACGAACCGCCTCGGGGAGAGTCGAGTCGTATACGAGTTTGCCCGATCGTCTACGATAAAGT
1 TGATACGAACCGCCTCGGGGAGAGTCGAGTCGTATACGAGTTTGCCCGATCGTCTACGATAAAGT
*
58535216 ATCGTTCGGTTTGTTCAAAAAAAATGTTTCTAAATAAATTATGCGGAAGCTACTCAAGGGGTTCA
66 ATCGTTCGGTTTGTTCAAAAAAAATGTTTCTAAATAAATTATGCGGAAGCTATTCAAGGGGTTCA
*
58535281 AATGAAGGGGTTAAAATATGAATATTAAGGTTTGGTTTAAAGTAAATGAAAGAATGGAAAGAAGG
131 AATGAAGGGGTTAAAATATGAATATTAAGGTTCGGTTTAAAGTAAATGAAAGAATGGAAAGAAGG
58535346 AACTCAAAAGCAAGCACGAACCAATATTAGAAAATATCGACCCAAATGCTTATAGGCTTTCAAGG
196 AACTCAAAAGCAAGCACGAACCAATATTAGAAAATATCGACCCAAATGCTTATAGGCTTTCAAGG
58535411 CGAAAATGAAAATGATAGAACCTCGACCCACTACTTAACAAAGTAGGAACCTCGGTATATGGGTG
261 CGAAAATGAAAATGATAGAACCTCGACCCACTACTTAACAAAGTAGGAACCTCGGTATATGGGTG
*
58535476 AACGAAACAGGGTTGACGCCGCTACTAGGTAGATAAGTCAACAAAGTCTCAAACAAAGTTTAGAG
326 AACGAAACAGGGTTGACGCCACTACTAGGTAGATAAGTCAACAAAGTCTCAAACAAAGTTTAGAG
58535541 AAGAAAATCAA
391 AAGAAAATCAA
* *
58535552 TGATACGAACCGCCTCGGGGAGAGTCAAGTCGTATACGAGTTTGCCCGATCGTCTACGACAAAGT
1 TGATACGAACCGCCTCGGGGAGAGTCGAGTCGTATACGAGTTTGCCCGATCGTCTACGATAAAGT
* * *
58535617 ATCGTTCGATTTGTTC-ACAAAAATGTTTCTAAATAAATTATGTGGAAGCTATTCAAGGGGTTCA
66 ATCGTTCGGTTTGTTCAAAAAAAATGTTTCTAAATAAATTATGCGGAAGCTATTCAAGGGGTTCA
*
58535681 AATGAAGGGGTTAAAATATGAATATTAAGGTTCGGTTTAAAGTAAATGAAATAATGGAAAGAAGG
131 AATGAAGGGGTTAAAATATGAATATTAAGGTTCGGTTTAAAGTAAATGAAAGAATGGAAAGAAGG
*
58535746 AACTCAAAAGCAAGCACGAACCAATATTAGAAAATATTGACCCAAATGCTTATAGGCTTTCAAGG
196 AACTCAAAAGCAAGCACGAACCAATATTAGAAAATATCGACCCAAATGCTTATAGGCTTTCAAGG
58535811 CGAAAATGAAAATGATAGAACCTCGACCCACTACTTAACAAAGTAGGAACCTCGGTATATGGGTG
261 CGAAAATGAAAATGATAGAACCTCGACCCACTACTTAACAAAGTAGGAACCTCGGTATATGGGTG
58535876 AACGAAACAGGGTTGACGCCACTACTAGGTAGATAAGTCAACAAAGTCTCAAACAAAGTTTAGAG
326 AACGAAACAGGGTTGACGCCACTACTAGGTAGATAAGTCAACAAAGTCTCAAACAAAGTTTAGAG
58535941 AAGAAAATCAA
391 AAGAAAATCAA
* *
58535952 TGATACGAACCGCCTCGAGGAGAGTCGAGTCGTATACGAGTTTGCCCGATCGTCTACGAAAAAGT
1 TGATACGAACCGCCTCGGGGAGAGTCGAGTCGTATACGAGTTTGCCCGATCGTCTACGATAAAGT
*
58536017 ATCGTTCGGTTTGTTCAAAAAAGATGTTTCTAAATAAATTATGCGGAAGCTATTCAAGGGGTTCA
66 ATCGTTCGGTTTGTTCAAAAAAAATGTTTCTAAATAAATTATGCGGAAGCTATTCAAGGGGTTCA
* *
58536082 AATGAAGGGTTTAAAATATGAATATTAAGGTTCGTTTTAAAGTAAATGAAAGAATGGAAAGAAGG
131 AATGAAGGGGTTAAAATATGAATATTAAGGTTCGGTTTAAAGTAAATGAAAGAATGGAAAGAAGG
58536147 AACTCAAAAGCAAGCACGAACCAATATTAGAAAATATCGACCCAAATGCTTATAGGCTTTCAAGG
196 AACTCAAAAGCAAGCACGAACCAATATTAGAAAATATCGACCCAAATGCTTATAGGCTTTCAAGG
* *
58536212 AGAAAATGAAAATGATAGAACCTCGACCCACTACTTAACAAAGTAGGAACCTCAGTATATGGGTG
261 CGAAAATGAAAATGATAGAACCTCGACCCACTACTTAACAAAGTAGGAACCTCGGTATATGGGTG
*
58536277 AACGAAACAGGGTCGACGCCACTACTAGGTAGATAAGTCAACAAAGTCTCAAACAAAGTTTAGAG
326 AACGAAACAGGGTTGACGCCACTACTAGGTAGATAAGTCAACAAAGTCTCAAACAAAGTTTAGAG
58536342 AAGAAAATCAA
391 AAGAAAATCAA
* *
58536353 TGATACGAACCGCCTCGGGGAGAGTCGAGTCGTATGCGAGTTTGCCCGATCGTCTACGAGAAAGT
1 TGATACGAACCGCCTCGGGGAGAGTCGAGTCGTATACGAGTTTGCCCGATCGTCTACGATAAAGT
*
58536418 ATCGTTCGGTTTGTTCAAAAAAGATGTTTCTAAATAAATTATGCGGAAGCTATTCAAGGGGTTCA
66 ATCGTTCGGTTTGTTCAAAAAAAATGTTTCTAAATAAATTATGCGGAAGCTATTCAAGGGGTTCA
58536483 AATGAAGGGGTTAAAATATGAATATTAAGGTTCGGTTTAAAGTAAATGAAAGAATGGAAAGAAGG
131 AATGAAGGGGTTAAAATATGAATATTAAGGTTCGGTTTAAAGTAAATGAAAGAATGGAAAGAAGG
58536548 AACTCAAAAGCAAGCACGAACCAATATTAGAAAATATCGACCCAAATGCTTATAGGCTTTCAAGG
196 AACTCAAAAGCAAGCACGAACCAATATTAGAAAATATCGACCCAAATGCTTATAGGCTTTCAAGG
*
58536613 CGAAAATGAAAATGATAGAACCTCGACCCACTACTTAACAAAGTAGGAACCTCAGTATATGGGTG
261 CGAAAATGAAAATGATAGAACCTCGACCCACTACTTAACAAAGTAGGAACCTCGGTATATGGGTG
58536678 AACGAAACAGGGTTGACGCCACTACTAGGTAGATAAGTCAACAAAGTCTCAAACAAAGTTTAGAG
326 AACGAAACAGGGTTGACGCCACTACTAGGTAGATAAGTCAACAAAGTCTCAAACAAAGTTTAGAG
58536743 AAGAAAAT
391 AAGAAAAT
58536751 TCTCACAAGA
Statistics
Matches: 1562, Mismatches: 37, Indels: 2
0.98 0.02 0.00
Matches are distributed among these distances:
400 389 0.25
401 1173 0.75
ACGTcount: A:0.39, C:0.16, G:0.22, T:0.23
Consensus pattern (401 bp):
TGATACGAACCGCCTCGGGGAGAGTCGAGTCGTATACGAGTTTGCCCGATCGTCTACGATAAAGT
ATCGTTCGGTTTGTTCAAAAAAAATGTTTCTAAATAAATTATGCGGAAGCTATTCAAGGGGTTCA
AATGAAGGGGTTAAAATATGAATATTAAGGTTCGGTTTAAAGTAAATGAAAGAATGGAAAGAAGG
AACTCAAAAGCAAGCACGAACCAATATTAGAAAATATCGACCCAAATGCTTATAGGCTTTCAAGG
CGAAAATGAAAATGATAGAACCTCGACCCACTACTTAACAAAGTAGGAACCTCGGTATATGGGTG
AACGAAACAGGGTTGACGCCACTACTAGGTAGATAAGTCAACAAAGTCTCAAACAAAGTTTAGAG
AAGAAAATCAA
Found at i:58536386 original size:801 final size:801
Alignment explanation
Indices: 58534750--58536750 Score: 3770
Period size: 801 Copynumber: 2.5 Consensus size: 801
58534740 AAATACATGT
*
58534750 TGATACGAACCGCCTCGGGGAGAGTCGAGTCGTATACGAGTTTGCCCGATCGTCTACGATAAAGT
1 TGATACGAACCGCCTCGGGGAGAGTCGAGTCGTATACGAGTTTGCCCGATCGTCTACGACAAAGT
58534815 ATCGTTC-AGTTTGTTCAAAAAAACTGTTTCTAAATAAATTATGCGGAAGCTATTCAAGGGGTTC
66 ATCGTTCGA-TTTGTTCAAAAAAA-TGTTTCTAAATAAATTATGCGGAAGCTATTCAAGGGGTTC
58534879 AAATGAAGGGGTTAAAATATGAATATTAAGGTTCGGTTTAAAGTAAATGAAAGAATGGAAAGAAG
129 AAATGAAGGGGTTAAAATATGAATATTAAGGTTCGGTTTAAAGTAAATGAAAGAATGGAAAGAAG
58534944 GAACTCAAAAGCAAGCACGAACCAATATTAGAAAATATCGACCCAAATGCTTATAGGCTTTCAAG
194 GAACTCAAAAGCAAGCACGAACCAATATTAGAAAATATCGACCCAAATGCTTATAGGCTTTCAAG
*
58535009 GTGAAAATGAAAATGATAGAACCTCGACCCACTACTTAACAAAGTAGGAACCTCGGTATATGGGT
259 GCGAAAATGAAAATGATAGAACCTCGACCCACTACTTAACAAAGTAGGAACCTCGGTATATGGGT
58535074 GAACGAAACAGGGTTGACGCCACTACTAGGTAGATAAGTCAACAAAGTCTCAAACAAAGTTTAGA
324 GAACGAAACAGGGTTGACGCCACTACTAGGTAGATAAGTCAACAAAGTCTCAAACAAAGTTTAGA
*
58535139 GAAGAAAATCAATGATACGAACCGCCTCGGGGAGAGTCGAGTCGTATACGAGTTTGCCCGATCGT
389 GAAGAAAATCAATGATACGAACCGCCTCGAGGAGAGTCGAGTCGTATACGAGTTTGCCCGATCGT
*
58535204 CTACGATAAAGTATCGTTCGGTTTGTTCAAAAAAAATGTTTCTAAATAAATTATGCGGAAGCTAC
454 CTACGAAAAAGTATCGTTCGGTTTGTTCAAAAAAAATGTTTCTAAATAAATTATGCGGAAGCTAC
*
58535269 TCAAGGGGTTCAAATGAAGGGGTTAAAATATGAATATTAAGGTTTGGTTTAAAGTAAATGAAAGA
519 TCAAGGGGTTCAAATGAAGGGGTTAAAATATGAATATTAAGGTTCGGTTTAAAGTAAATGAAAGA
58535334 ATGGAAAGAAGGAACTCAAAAGCAAGCACGAACCAATATTAGAAAATATCGACCCAAATGCTTAT
584 ATGGAAAGAAGGAACTCAAAAGCAAGCACGAACCAATATTAGAAAATATCGACCCAAATGCTTAT
*
58535399 AGGCTTTCAAGGCGAAAATGAAAATGATAGAACCTCGACCCACTACTTAACAAAGTAGGAACCTC
649 AGGCTTTCAAGGAGAAAATGAAAATGATAGAACCTCGACCCACTACTTAACAAAGTAGGAACCTC
* * *
58535464 GGTATATGGGTGAACGAAACAGGGTTGACGCCGCTACTAGGTAGATAAGTCAACAAAGTCTCAAA
714 AGTATATGGGTGAACGAAACAGGGTCGACGCCACTACTAGGTAGATAAGTCAACAAAGTCTCAAA
58535529 CAAAGTTTAGAGAAGAAAATCAA
779 CAAAGTTTAGAGAAGAAAATCAA
*
58535552 TGATACGAACCGCCTCGGGGAGAGTCAAGTCGTATACGAGTTTGCCCGATCGTCTACGACAAAGT
1 TGATACGAACCGCCTCGGGGAGAGTCGAGTCGTATACGAGTTTGCCCGATCGTCTACGACAAAGT
* *
58535617 ATCGTTCGATTTGTTCACAAAAATGTTTCTAAATAAATTATGTGGAAGCTATTCAAGGGGTTCAA
66 ATCGTTCGATTTGTTCAAAAAAATGTTTCTAAATAAATTATGCGGAAGCTATTCAAGGGGTTCAA
*
58535682 ATGAAGGGGTTAAAATATGAATATTAAGGTTCGGTTTAAAGTAAATGAAATAATGGAAAGAAGGA
131 ATGAAGGGGTTAAAATATGAATATTAAGGTTCGGTTTAAAGTAAATGAAAGAATGGAAAGAAGGA
*
58535747 ACTCAAAAGCAAGCACGAACCAATATTAGAAAATATTGACCCAAATGCTTATAGGCTTTCAAGGC
196 ACTCAAAAGCAAGCACGAACCAATATTAGAAAATATCGACCCAAATGCTTATAGGCTTTCAAGGC
58535812 GAAAATGAAAATGATAGAACCTCGACCCACTACTTAACAAAGTAGGAACCTCGGTATATGGGTGA
261 GAAAATGAAAATGATAGAACCTCGACCCACTACTTAACAAAGTAGGAACCTCGGTATATGGGTGA
58535877 ACGAAACAGGGTTGACGCCACTACTAGGTAGATAAGTCAACAAAGTCTCAAACAAAGTTTAGAGA
326 ACGAAACAGGGTTGACGCCACTACTAGGTAGATAAGTCAACAAAGTCTCAAACAAAGTTTAGAGA
58535942 AGAAAATCAATGATACGAACCGCCTCGAGGAGAGTCGAGTCGTATACGAGTTTGCCCGATCGTCT
391 AGAAAATCAATGATACGAACCGCCTCGAGGAGAGTCGAGTCGTATACGAGTTTGCCCGATCGTCT
* *
58536007 ACGAAAAAGTATCGTTCGGTTTGTTCAAAAAAGATGTTTCTAAATAAATTATGCGGAAGCTATTC
456 ACGAAAAAGTATCGTTCGGTTTGTTCAAAAAAAATGTTTCTAAATAAATTATGCGGAAGCTACTC
* *
58536072 AAGGGGTTCAAATGAAGGGTTTAAAATATGAATATTAAGGTTCGTTTTAAAGTAAATGAAAGAAT
521 AAGGGGTTCAAATGAAGGGGTTAAAATATGAATATTAAGGTTCGGTTTAAAGTAAATGAAAGAAT
58536137 GGAAAGAAGGAACTCAAAAGCAAGCACGAACCAATATTAGAAAATATCGACCCAAATGCTTATAG
586 GGAAAGAAGGAACTCAAAAGCAAGCACGAACCAATATTAGAAAATATCGACCCAAATGCTTATAG
58536202 GCTTTCAAGGAGAAAATGAAAATGATAGAACCTCGACCCACTACTTAACAAAGTAGGAACCTCAG
651 GCTTTCAAGGAGAAAATGAAAATGATAGAACCTCGACCCACTACTTAACAAAGTAGGAACCTCAG
58536267 TATATGGGTGAACGAAACAGGGTCGACGCCACTACTAGGTAGATAAGTCAACAAAGTCTCAAACA
716 TATATGGGTGAACGAAACAGGGTCGACGCCACTACTAGGTAGATAAGTCAACAAAGTCTCAAACA
58536332 AAGTTTAGAGAAGAAAATCAA
781 AAGTTTAGAGAAGAAAATCAA
* *
58536353 TGATACGAACCGCCTCGGGGAGAGTCGAGTCGTATGCGAGTTTGCCCGATCGTCTACGAGAAAGT
1 TGATACGAACCGCCTCGGGGAGAGTCGAGTCGTATACGAGTTTGCCCGATCGTCTACGACAAAGT
*
58536418 ATCGTTCGGTTTGTTCAAAAAAGATGTTTCTAAATAAATTATGCGGAAGCTATTCAAGGGGTTCA
66 ATCGTTCGATTTGTTCAAAAAA-ATGTTTCTAAATAAATTATGCGGAAGCTATTCAAGGGGTTCA
58536483 AATGAAGGGGTTAAAATATGAATATTAAGGTTCGGTTTAAAGTAAATGAAAGAATGGAAAGAAGG
130 AATGAAGGGGTTAAAATATGAATATTAAGGTTCGGTTTAAAGTAAATGAAAGAATGGAAAGAAGG
58536548 AACTCAAAAGCAAGCACGAACCAATATTAGAAAATATCGACCCAAATGCTTATAGGCTTTCAAGG
195 AACTCAAAAGCAAGCACGAACCAATATTAGAAAATATCGACCCAAATGCTTATAGGCTTTCAAGG
*
58536613 CGAAAATGAAAATGATAGAACCTCGACCCACTACTTAACAAAGTAGGAACCTCAGTATATGGGTG
260 CGAAAATGAAAATGATAGAACCTCGACCCACTACTTAACAAAGTAGGAACCTCGGTATATGGGTG
58536678 AACGAAACAGGGTTGACGCCACTACTAGGTAGATAAGTCAACAAAGTCTCAAACAAAGTTTAGAG
325 AACGAAACAGGGTTGACGCCACTACTAGGTAGATAAGTCAACAAAGTCTCAAACAAAGTTTAGAG
58536743 AAGAAAAT
390 AAGAAAAT
58536751 TCTCACAAGA
Statistics
Matches: 1170, Mismatches: 27, Indels: 4
0.97 0.02 0.00
Matches are distributed among these distances:
801 780 0.67
802 389 0.33
803 1 0.00
ACGTcount: A:0.39, C:0.16, G:0.22, T:0.23
Consensus pattern (801 bp):
TGATACGAACCGCCTCGGGGAGAGTCGAGTCGTATACGAGTTTGCCCGATCGTCTACGACAAAGT
ATCGTTCGATTTGTTCAAAAAAATGTTTCTAAATAAATTATGCGGAAGCTATTCAAGGGGTTCAA
ATGAAGGGGTTAAAATATGAATATTAAGGTTCGGTTTAAAGTAAATGAAAGAATGGAAAGAAGGA
ACTCAAAAGCAAGCACGAACCAATATTAGAAAATATCGACCCAAATGCTTATAGGCTTTCAAGGC
GAAAATGAAAATGATAGAACCTCGACCCACTACTTAACAAAGTAGGAACCTCGGTATATGGGTGA
ACGAAACAGGGTTGACGCCACTACTAGGTAGATAAGTCAACAAAGTCTCAAACAAAGTTTAGAGA
AGAAAATCAATGATACGAACCGCCTCGAGGAGAGTCGAGTCGTATACGAGTTTGCCCGATCGTCT
ACGAAAAAGTATCGTTCGGTTTGTTCAAAAAAAATGTTTCTAAATAAATTATGCGGAAGCTACTC
AAGGGGTTCAAATGAAGGGGTTAAAATATGAATATTAAGGTTCGGTTTAAAGTAAATGAAAGAAT
GGAAAGAAGGAACTCAAAAGCAAGCACGAACCAATATTAGAAAATATCGACCCAAATGCTTATAG
GCTTTCAAGGAGAAAATGAAAATGATAGAACCTCGACCCACTACTTAACAAAGTAGGAACCTCAG
TATATGGGTGAACGAAACAGGGTCGACGCCACTACTAGGTAGATAAGTCAACAAAGTCTCAAACA
AAGTTTAGAGAAGAAAATCAA
Found at i:58537798 original size:30 final size:30
Alignment explanation
Indices: 58537764--58537860 Score: 99
Period size: 30 Copynumber: 3.2 Consensus size: 30
58537754 TAAACTAAAA
58537764 TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
1 TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
* * * * *
58537794 TGAGCTAAGGC-TAAACTCCTAAGCTGAAGT
1 TGAGCTAA-GCTTTAGCTCGTGAGCTAAAGT
* *
58537824 TGAGCTAAGGTTTAGCTCGTGAGTTGAAAG-
1 TGAGCTAAGCTTTAGCTCGTGAGCT-AAAGT
58537854 TGAGCTA
1 TGAGCTA
58537861 GGAGTGAGCT
Statistics
Matches: 52, Mismatches: 12, Indels: 6
0.74 0.17 0.09
Matches are distributed among these distances:
29 1 0.02
30 46 0.88
31 5 0.10
ACGTcount: A:0.29, C:0.15, G:0.28, T:0.28
Consensus pattern (30 bp):
TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
Found at i:58538179 original size:12 final size:12
Alignment explanation
Indices: 58538162--58538191 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
58538152 CAAACATTGA
58538162 ACACATTAAATC
1 ACACATTAAATC
58538174 ACACATTAAATC
1 ACACATTAAATC
58538186 ACACAT
1 ACACAT
58538192 AGATTCGGTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.50, C:0.27, G:0.00, T:0.23
Consensus pattern (12 bp):
ACACATTAAATC
Found at i:58538476 original size:20 final size:21
Alignment explanation
Indices: 58538423--58538476 Score: 60
Period size: 20 Copynumber: 2.7 Consensus size: 21
58538413 AGCTAAAAGT
*
58538423 AGCT-AAATTGAGCTCAAACA
1 AGCTGAAATAGAGCTCAAACA
*
58538443 AGCTGAAATA-AGCTCAAACG
1 AGCTGAAATAGAGCTCAAACA
*
58538463 AGCTG-ATTAGAGCT
1 AGCTGAAATAGAGCT
58538477 TGGGGAGTTG
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
19 3 0.10
20 22 0.76
21 4 0.14
ACGTcount: A:0.41, C:0.19, G:0.20, T:0.20
Consensus pattern (21 bp):
AGCTGAAATAGAGCTCAAACA
Found at i:58542540 original size:46 final size:47
Alignment explanation
Indices: 58542397--58542758 Score: 435
Period size: 46 Copynumber: 7.7 Consensus size: 47
58542387 GGCTATGGCC
58542397 GTGATG-ATGTG-AAGTGTATATATGTGAT-AGGCCTAAT-G--GAT
1 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
58542438 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
1 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
58542485 GTGATGAATGTGAAAGTGTATATATGTGATAAGG-CTAATGGCCGAT
1 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
58542531 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT-ATGGCCGAT
1 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
58542577 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG--GAT
1 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
58542622 GTGAAATGAATAGTGAAAGTTGGTGATATAATGTGAGTGATAGTAGGCCTAATGGCCGAT
1 GTG--ATGAAT-GTGAAAG-T-GT-ATAT-A--T--GTGATA--AGGCCTAATGGCCGAT
** * * * *
58542682 GTGATGAATGTG-AAGTGTATATATGTG--CGGGCCGAGTGGCCAAC
1 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
* * *
58542726 GTGATGGATGTGAAAGTGCATAAATGTGATAAG
1 GTGATGAATGTGAAAGTGTATATATGTGATAAG
58542759 TCCGAAGGGC
Statistics
Matches: 284, Mismatches: 11, Indels: 46
0.83 0.03 0.13
Matches are distributed among these distances:
41 6 0.02
42 5 0.02
43 17 0.06
44 31 0.11
45 20 0.07
46 92 0.32
47 50 0.18
48 10 0.04
49 1 0.00
50 3 0.01
51 4 0.01
52 2 0.01
53 4 0.01
54 3 0.01
55 1 0.00
56 9 0.03
57 3 0.01
58 17 0.06
60 6 0.02
ACGTcount: A:0.31, C:0.07, G:0.32, T:0.30
Consensus pattern (47 bp):
GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
Found at i:58542552 original size:93 final size:91
Alignment explanation
Indices: 58542397--58542708 Score: 436
Period size: 93 Copynumber: 3.3 Consensus size: 91
58542387 GGCTATGGCC
58542397 GTGATG-ATGTGAAGTGTATATATGTGAT-AGGCCTAAT-GGATGTGATGAATGTGAAAGTGTAT
1 GTGATGAATGTGAAGTGTATATATGTGATAAGGCCTAATGGGATGTGATGAATGTGAAAGTGTAT
58542459 ATATGTGATAAGGCCTAATGGCCGAT
66 ATATGTGATAAGGCCTAATGGCCGAT
58542485 GTGATGAATGTGAAAGTGTATATATGTGATAAGG-CTAATGGCCGATGTGATGAATGTGAAAGTG
1 GTGATGAATGTG-AAGTGTATATATGTGATAAGGCCTAATGG--GATGTGATGAATGTGAAAGTG
58542549 TATATATGTGATAAGGCCT-ATGGCCGAT
63 TATATATGTGATAAGGCCTAATGGCCGAT
58542577 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGGATGTGAAATGAATAGTGAAAGT
1 GTGATGAATGTG-AAGTGTATATATGTGATAAGGCCTAATGGGATGTG--ATGAAT-GTGAAAG-
58542642 TGGTGATATAATGTGAGTGATAGTAGGCCTAATGGCCGAT
61 T-GT-ATAT-A--T--GTGATA--AGGCCTAATGGCCGAT
58542682 GTGATGAATGTGAAGTGTATATATGTG
1 GTGATGAATGTGAAGTGTATATATGTG
58542709 CGGGCCGAGT
Statistics
Matches: 203, Mismatches: 0, Indels: 26
0.89 0.00 0.11
Matches are distributed among these distances:
88 6 0.03
89 5 0.02
90 22 0.11
91 10 0.05
92 43 0.21
93 53 0.26
94 7 0.03
95 1 0.00
96 2 0.01
97 4 0.02
98 1 0.00
100 1 0.00
102 6 0.03
104 21 0.10
105 21 0.10
ACGTcount: A:0.32, C:0.06, G:0.31, T:0.31
Consensus pattern (91 bp):
GTGATGAATGTGAAGTGTATATATGTGATAAGGCCTAATGGGATGTGATGAATGTGAAAGTGTAT
ATATGTGATAAGGCCTAATGGCCGAT
Found at i:58542946 original size:37 final size:36
Alignment explanation
Indices: 58542873--58542950 Score: 104
Period size: 36 Copynumber: 2.1 Consensus size: 36
58542863 TCCAGCTCTA
* *
58542873 AAGACCCGATGACTACGGTGGGAATTTTGTCCGGGT
1 AAGACCCGATAACTACGGTGGGAATTATGTCCGGGT
*
58542909 AAGACCCGATAACTTC-GTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGGTG-GGA-ATTATGTCCGGGT
58542946 AAGAC
1 AAGAC
58542951 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
35 3 0.08
36 17 0.46
37 17 0.46
ACGTcount: A:0.26, C:0.19, G:0.31, T:0.24
Consensus pattern (36 bp):
AAGACCCGATAACTACGGTGGGAATTATGTCCGGGT
Found at i:58544788 original size:37 final size:41
Alignment explanation
Indices: 58544734--58544830 Score: 139
Period size: 37 Copynumber: 2.4 Consensus size: 41
58544724 TTGGTTTTCA
58544734 GCACTAAGTGTGCGGGCAATAA-TGTTCA-G-GTGAGATT-
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGTGTGAGATTG
*
58544771 GCACTAAGTGTGTGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCAC-G-TGTGAGATTG
58544814 GCACTAAGTGTGCGGGC
1 GCACTAAGTGTGCGGGC
58544831 TTGAAATGCA
Statistics
Matches: 52, Mismatches: 2, Indels: 6
0.87 0.03 0.10
Matches are distributed among these distances:
37 21 0.40
38 6 0.12
40 1 0.02
42 8 0.15
43 16 0.31
ACGTcount: A:0.24, C:0.14, G:0.35, T:0.27
Consensus pattern (41 bp):
GCACTAAGTGTGCGGGCAATAAGTGTTCACGTGTGAGATTG
Found at i:58545308 original size:40 final size:40
Alignment explanation
Indices: 58545186--58545367 Score: 165
Period size: 40 Copynumber: 4.6 Consensus size: 40
58545176 TCGAATGATG
** *
58545186 TCCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGAGCATTAATGCT-AGTGA-TATA
* ** * * * *
58545226 TCCGGACTAAGAT-CCGAAG-GCATTGGTGCGAGTTACAAA
1 TCCGGGCTAAG-TCCCGAAGAGCATTAATGCTAGTGATATA
*
58545265 TCCGGGCTAAGTCCCGAAGAGCATTAATGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTAATGCTAGTGATATA
* **
58545305 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATA
1 TCCGGGCTAAGTCCCGAAGAGCATTAATGCTAGTGATATA
* *
58545345 TCCGTGCTAAATCCCGAAGAGCA
1 TCCGGGCTAAGTCCCGAAGAGCA
58545368 ATCATGCGGT
Statistics
Matches: 118, Mismatches: 20, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
38 1 0.01
39 19 0.16
40 91 0.77
41 7 0.06
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGAGCATTAATGCTAGTGATATA
Found at i:58545321 original size:79 final size:82
Alignment explanation
Indices: 58545186--58545367 Score: 212
Period size: 80 Copynumber: 2.3 Consensus size: 82
58545176 TCGAATGATG
**
58545186 TCCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAG-GCA
1 TCCGGGCTAAGTCCCGAAGAGCATTAATGCTAAGTGACCATATCCGGACTAAGATCCGAAGAGCA
* *
58545248 TTGGTGCGAGTTACAAA
66 TTCGTGCGAGTGACAAA
** * *
58545265 TCCGGGCTAAGTCCCGAAGAGCATTAATGCT-AGTGA-TGTATCCGGGCTAAGTTCCGAAGAGCA
1 TCCGGGCTAAGTCCCGAAGAGCATTAATGCTAAGTGACCATATCCGGACTAAGATCCGAAGAGCA
* * *
58545328 TTCGTGCTAGTGATATA
66 TTCGTGCGAGTGACAAA
* *
58545345 TCCGTGCTAAATCCCGAAGAGCA
1 TCCGGGCTAAGTCCCGAAGAGCA
58545368 ATCATGCGGT
Statistics
Matches: 87, Mismatches: 13, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
79 38 0.44
80 43 0.49
81 6 0.07
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.24
Consensus pattern (82 bp):
TCCGGGCTAAGTCCCGAAGAGCATTAATGCTAAGTGACCATATCCGGACTAAGATCCGAAGAGCA
TTCGTGCGAGTGACAAA
Found at i:58548655 original size:37 final size:38
Alignment explanation
Indices: 58548599--58548678 Score: 110
Period size: 37 Copynumber: 2.1 Consensus size: 38
58548589 CCGAGCTCTA
* *
58548599 AAGACCCGATGACTACGTGTGG-GAATTTTGT-CCGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCCGGGT
*
58548636 AAGACCCGATAACTTCGTGTGGAGATTATGTCCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCCGGGT
58548674 AAGAC
1 AAGAC
58548679 TTTGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
37 26 0.68
38 12 0.32
ACGTcount: A:0.25, C:0.20, G:0.30, T:0.25
Consensus pattern (38 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCCGGGT
Found at i:58565719 original size:11 final size:11
Alignment explanation
Indices: 58565700--58565747 Score: 51
Period size: 11 Copynumber: 4.1 Consensus size: 11
58565690 GTATTACGAG
*
58565700 ATTGTAAAAAA
1 ATTGAAAAAAA
58565711 ATTGAAAAAAAA
1 ATTG-AAAAAAA
58565723 GATTCGAAAAAAA
1 -ATT-GAAAAAAA
*
58565736 ATTCAAAAAAA
1 ATTGAAAAAAA
58565747 A
1 A
58565748 AGTTTGTATT
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
11 12 0.38
12 9 0.28
13 10 0.31
14 1 0.03
ACGTcount: A:0.69, C:0.04, G:0.08, T:0.19
Consensus pattern (11 bp):
ATTGAAAAAAA
Found at i:58565722 original size:12 final size:12
Alignment explanation
Indices: 58565705--58565748 Score: 54
Period size: 12 Copynumber: 3.6 Consensus size: 12
58565695 ACGAGATTGT
58565705 AAAAAAATTGAA
1 AAAAAAATTGAA
58565717 AAAAAAGATTCG-A
1 AAAAAA-ATT-GAA
*
58565730 AAAAAAATTCAA
1 AAAAAAATTGAA
58565742 AAAAAAA
1 AAAAAAA
58565749 GTTTGTATTC
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
12 17 0.61
13 10 0.36
14 1 0.04
ACGTcount: A:0.75, C:0.05, G:0.07, T:0.14
Consensus pattern (12 bp):
AAAAAAATTGAA
Found at i:58567816 original size:13 final size:14
Alignment explanation
Indices: 58567790--58567843 Score: 56
Period size: 15 Copynumber: 3.8 Consensus size: 14
58567780 TCTATTGAGC
58567790 GAGAAAAAGAAAAA
1 GAGAAAAAGAAAAA
*
58567804 GAGAAAAA-CAAAA
1 GAGAAAAAGAAAAA
*
58567817 GAGTGAAAAGAAAAA
1 GAG-AAAAAGAAAAA
*
58567832 GAAAGAAAAGAA
1 GAGA-AAAAGAA
58567844 TGAAGATGAG
Statistics
Matches: 32, Mismatches: 5, Indels: 5
0.76 0.12 0.12
Matches are distributed among these distances:
13 7 0.22
14 12 0.38
15 13 0.41
ACGTcount: A:0.74, C:0.02, G:0.22, T:0.02
Consensus pattern (14 bp):
GAGAAAAAGAAAAA
Found at i:58570218 original size:13 final size:13
Alignment explanation
Indices: 58570200--58570228 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
58570190 TTTTAACCCC
58570200 ATTACTCCTCTTG
1 ATTACTCCTCTTG
58570213 ATTACTCCTCTTG
1 ATTACTCCTCTTG
58570226 ATT
1 ATT
58570229 TGATTCCTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.17, C:0.28, G:0.07, T:0.48
Consensus pattern (13 bp):
ATTACTCCTCTTG
Found at i:58574781 original size:39 final size:38
Alignment explanation
Indices: 58574691--58574912 Score: 211
Period size: 39 Copynumber: 5.7 Consensus size: 38
58574681 TTGAATGATG
* * *
58574691 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGACCATA
1 TCCGGACTAAGT-CCGAAGGCATTTGTGCGAGA-T-ACTA-A
58574731 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAA
1 TCCGGACTAAG-TCCGAAGGCATTTGTGCGAGATACTAA
58574770 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAA
1 TCCGGACTAAG-TCCGAAGGCATTTGTGCGAGATACTAA
* * *
58574809 TTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
1 -TCCGGACTAAGTCCGAAGGCATTTGTGCGAGATACT-AA
**
58574849 T-CGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACTATA
1 TCCGGACTAAGT-CCGAAGGCATTTGTGCGAGA-TACTA-A
* *
58574888 ACCGG-CTATGTCCCGAAGGCATTTG
1 TCCGGACTAAGT-CCGAAGGCATTTG
58574913 AACGAGGAGC
Statistics
Matches: 161, Mismatches: 12, Indels: 19
0.84 0.06 0.10
Matches are distributed among these distances:
38 9 0.06
39 105 0.65
40 36 0.22
41 10 0.06
42 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (38 bp):
TCCGGACTAAGTCCGAAGGCATTTGTGCGAGATACTAA
Found at i:58574865 original size:78 final size:79
Alignment explanation
Indices: 58574691--58574912 Score: 251
Period size: 78 Copynumber: 2.8 Consensus size: 79
58574681 TTGAATGATG
* * * *
58574691 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGT-ACTATATCCGGGCTAAGACCCGAAGGCATT
58574755 TGTGCGAGATACTAA
65 TGTGCGAGATACTAA
*
58574770 TCCGGACTAAGAT-CCGAAGGCATTTGTGCG-AGATACTA-ATTCCGGGCTAAG-CCCGAAGGCA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAAG-TACTATA-TCCGGGCTAAGACCCGAAGGCA
*
58574831 TTTGTGCGAGTTACTAAA
63 TTTGTGCGAGATACT-AA
* * * * *
58574849 T-CGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAACC-GGCTATGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGTACTATATCCGGGCTAAGACCCGAAGGCATTT
58574912 G
66 G
58574913 AACGAGGAGC
Statistics
Matches: 123, Mismatches: 11, Indels: 19
0.80 0.07 0.12
Matches are distributed among these distances:
77 7 0.06
78 69 0.56
79 38 0.31
80 9 0.07
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (79 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGTACTATATCCGGGCTAAGACCCGAAGGCATTT
GTGCGAGATACTAA
Found at i:58574904 original size:117 final size:119
Alignment explanation
Indices: 58574691--58574912 Score: 278
Period size: 117 Copynumber: 1.9 Consensus size: 119
58574681 TTGAATGATG
*
58574691 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
*
58574756 GTGCGAGATACTAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
66 GTGCGAGATACTAAACCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
* * * **
58574810 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAAT-CGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAT
*
58574871 TTGTGCGA-ATTACTATAACCGG-CTATG-TCCCGAAGGCATTTG
64 TTGTGCGAGA-TACTA-AACCGGACTAAGAT-CCGAAGGCATTTG
58574913 AACGAGGAGC
Statistics
Matches: 90, Mismatches: 8, Indels: 12
0.82 0.07 0.11
Matches are distributed among these distances:
116 3 0.03
117 47 0.52
118 22 0.24
119 18 0.20
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (119 bp):
TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGATACTAAACCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:58574934 original size:78 final size:76
Alignment explanation
Indices: 58574698--58574945 Score: 220
Period size: 78 Copynumber: 3.2 Consensus size: 76
58574688 ATGTCCGGGC
* * *
58574698 TAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCATTTGTGCG
1 TAAGTCCCGAAGGCATTTGTGCGAA-TTACTATATCCGG-CTAAG-TCCCGAAGGCATTTGTGCG
* *
58574761 AGATACTAATCCGGAC
63 AG-GACTAATCCGG-T
58574777 TAAGAT-CCGAAGGCATTTGTGCGAGA-TACTA-ATTCCGGGCTAAG-CCCGAAGGCATTTGTGC
1 TAAG-TCCCGAAGGCATTTGTGCGA-ATTACTATA-TCC-GGCTAAGTCCCGAAGGCATTTGTGC
* *
58574838 GAGTTACTAAATCGGGT
62 GAG-GACT-AATCCGGT
* * **
58574855 TAAGTCCCGAAGGCATTTGTGCGAATTACTATAACCGGCTATGTCCCGAAGGCATTTGAACGAGG
1 TAAGTCCCGAAGGCATTTGTGCGAATTACTATATCCGGCTAAGTCCCGAAGGCATTTGTGCGAGG
58574920 AGCTATATCCGGT
66 A-CTA-ATCCGGT
* *
58574933 TAAATTCCGAAGG
1 TAAGTCCCGAAGG
58574946 TACGTGATTT
Statistics
Matches: 142, Mismatches: 14, Indels: 27
0.78 0.08 0.15
Matches are distributed among these distances:
77 10 0.07
78 90 0.63
79 30 0.21
80 11 0.08
81 1 0.01
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (76 bp):
TAAGTCCCGAAGGCATTTGTGCGAATTACTATATCCGGCTAAGTCCCGAAGGCATTTGTGCGAGG
ACTAATCCGGT
Found at i:58582837 original size:40 final size:40
Alignment explanation
Indices: 58582599--58582829 Score: 299
Period size: 40 Copynumber: 5.8 Consensus size: 40
58582589 TTGAATGATT
* * * *
58582599 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
58582639 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
58582679 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
58582718 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
58582758 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
58582799 -CCGGGCTATGTCCCGAAGGCATTTGAGCGAG
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG
58582830 GAGCTATATC
Statistics
Matches: 170, Mismatches: 16, Indels: 10
0.87 0.08 0.05
Matches are distributed among these distances:
39 35 0.21
40 125 0.74
41 10 0.06
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:58582845 original size:119 final size:119
Alignment explanation
Indices: 58582599--58582856 Score: 294
Period size: 119 Copynumber: 2.2 Consensus size: 119
58582589 TTGAATGATT
* *
58582599 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
* * *
58582664 GTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
66 GTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAGCGAGTGACTAAA
* * * **
58582718 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAT
* *
58582781 TTGTGCGA-ATTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAGCGAG-GAGCTATA
64 TTGTGCGAGA-TACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAGCGAGTGA-CTAAA
* *
58582838 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
58582857 TACGTGATTT
Statistics
Matches: 119, Mismatches: 14, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
118 4 0.03
119 82 0.69
120 33 0.28
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (119 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAGCGAGTGACTAAA
Found at i:58596136 original size:419 final size:419
Alignment explanation
Indices: 58595358--58596199 Score: 1675
Period size: 419 Copynumber: 2.0 Consensus size: 419
58595348 ATGAAATGAC
58595358 TGATATACCCGTATGCTATACTTGACCGTACTCGAGCATGACATTTTGCATACACGTATATATTA
1 TGATATACCCGTATGCTATACTTGACCGTACTCGAGCATGACATTTTGCATACACGTATATATTA
58595423 TGACATGACATGTTGCATGGGGGTGGGTTTGATATATATATATTGGAGGAAGTGTACTGTATTGG
66 TGACATGACATGTTGCATGGGGGTGGGTTTGATATATATATATTGGAGGAAGTGTACTGTATTGG
*
58595488 CATCATTGCTGCAATTACTGAATAGCGCCGCAACTAGTGCTATATTTGGAGTGTAGGTATGGGTG
131 CATCATTGCTGCAATTACTGAATAGCGCCGCAACTAGTGCTATATTTGGAGTGTAGGGATGGGTG
58595553 GGTCGATTTTATTCCCACATGGAGTGTAGGGTTGGACGGAGTGGAGTGTAGAGGATGGATGGGTA
196 GGTCGATTTTATTCCCACATGGAGTGTAGGGTTGGACGGAGTGGAGTGTAGAGGATGGATGGGTA
58595618 AGATTTTTGTTGCATTTTTGTTGTTGTTACTGTAATGGGTTAAGACCCACACTGATACTATTATT
261 AGATTTTTGTTGCATTTTTGTTGTTGTTACTGTAATGGGTTAAGACCCACACTGATACTATTATT
58595683 GAAATGGGCTACGGGCCACACTGATACTAGACTGTTACTGAATCATGCTTAGGCCCAAACCGCTT
326 GAAATGGGCTACGGGCCACACTGATACTAGACTGTTACTGAATCATGCTTAGGCCCAAACCGCTT
58595748 TTCCTATAGATTGTTTGATTAGTGAAAAT
391 TTCCTATAGATTGTTTGATTAGTGAAAAT
58595777 TGATATACCCGTATGCTATACTTGACCGTACTCGAGCATGACATTTTGCATACACGTATATATTA
1 TGATATACCCGTATGCTATACTTGACCGTACTCGAGCATGACATTTTGCATACACGTATATATTA
58595842 TGACATGACATGTTGCATGGGGGTGGGTTTGATATATATATATTGGAGGAAGTGTACTGTATTGG
66 TGACATGACATGTTGCATGGGGGTGGGTTTGATATATATATATTGGAGGAAGTGTACTGTATTGG
58595907 CATCATTGCTGCAATTACTGAATAGCGCCGCAACTAGTGCTATATTTGGAGTGTAGGGATGGGTG
131 CATCATTGCTGCAATTACTGAATAGCGCCGCAACTAGTGCTATATTTGGAGTGTAGGGATGGGTG
58595972 GGTCGATTTTATTCCCACATGGAGTGTAGGGTTGGACGGAGTGGAGTGTAGAGGATGGATGGGTA
196 GGTCGATTTTATTCCCACATGGAGTGTAGGGTTGGACGGAGTGGAGTGTAGAGGATGGATGGGTA
58596037 AGATTTTTGTTGCATTTTTGTTGTTGTTACTGTAATGGGTTAAGACCCACACTGATACTATTATT
261 AGATTTTTGTTGCATTTTTGTTGTTGTTACTGTAATGGGTTAAGACCCACACTGATACTATTATT
58596102 GAAATGGGCTACGGGCCACACTGATACTAGACTGTTACTGAATCATGCTTAGGCCCAAACCGCTT
326 GAAATGGGCTACGGGCCACACTGATACTAGACTGTTACTGAATCATGCTTAGGCCCAAACCGCTT
58596167 TTCCTATAGATTGTTTGATTAGTGAAAAT
391 TTCCTATAGATTGTTTGATTAGTGAAAAT
58596196 TGAT
1 TGAT
58596200 TACACACTGA
Statistics
Matches: 422, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
419 422 1.00
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.34
Consensus pattern (419 bp):
TGATATACCCGTATGCTATACTTGACCGTACTCGAGCATGACATTTTGCATACACGTATATATTA
TGACATGACATGTTGCATGGGGGTGGGTTTGATATATATATATTGGAGGAAGTGTACTGTATTGG
CATCATTGCTGCAATTACTGAATAGCGCCGCAACTAGTGCTATATTTGGAGTGTAGGGATGGGTG
GGTCGATTTTATTCCCACATGGAGTGTAGGGTTGGACGGAGTGGAGTGTAGAGGATGGATGGGTA
AGATTTTTGTTGCATTTTTGTTGTTGTTACTGTAATGGGTTAAGACCCACACTGATACTATTATT
GAAATGGGCTACGGGCCACACTGATACTAGACTGTTACTGAATCATGCTTAGGCCCAAACCGCTT
TTCCTATAGATTGTTTGATTAGTGAAAAT
Found at i:58597752 original size:55 final size:56
Alignment explanation
Indices: 58597687--58597801 Score: 137
Period size: 55 Copynumber: 2.1 Consensus size: 56
58597677 AGCATGGCTG
* *
58597687 CCAGATACAGA-AAATGTGACAGAGTCACCAGATACAGATATTTTGTGGCAGT-GCCA
1 CCAGATACAGATAAATGTGACAGAGCCACCAGA-ACAGATAATTTGTGGCA-TAGCCA
* * * *
58597743 CCAGA-ACAGATATATGTGGCAGGGCCACCAGAATAGATAATTTGTGGCATAGCCA
1 CCAGATACAGATAAATGTGACAGAGCCACCAGAACAGATAATTTGTGGCATAGCCA
58597798 CCAG
1 CCAG
58597802 GACGCTTCCT
Statistics
Matches: 51, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
54 1 0.02
55 28 0.55
56 22 0.43
ACGTcount: A:0.35, C:0.21, G:0.24, T:0.20
Consensus pattern (56 bp):
CCAGATACAGATAAATGTGACAGAGCCACCAGAACAGATAATTTGTGGCATAGCCA
Found at i:58597764 original size:27 final size:27
Alignment explanation
Indices: 58597712--58597801 Score: 110
Period size: 28 Copynumber: 3.2 Consensus size: 27
58597702 GTGACAGAGT
58597712 CACCAGATACAGATATTTTGTGGCAGTGC
1 CACCAGA-ACAGATA-TTTGTGGCAGTGC
* *
58597741 CACCAGAACAGATATATGTGGCAGGGC
1 CACCAGAACAGATATTTGTGGCAGTGC
*
58597768 CACCAGAATAGATAATTTGTGGCA-TAGC
1 CACCAGAACAGAT-ATTTGTGGCAGT-GC
58597796 CACCAG
1 CACCAG
58597802 GACGCTTCCT
Statistics
Matches: 54, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
27 23 0.43
28 24 0.44
29 7 0.13
ACGTcount: A:0.32, C:0.22, G:0.24, T:0.21
Consensus pattern (27 bp):
CACCAGAACAGATATTTGTGGCAGTGC
Found at i:58597797 original size:28 final size:27
Alignment explanation
Indices: 58597712--58597801 Score: 101
Period size: 27 Copynumber: 3.2 Consensus size: 27
58597702 GTGACAGAGT
*
58597712 CACCAGATACAGATATTTTGTGGCAGTGC
1 CACCAGA-ACAGATAATTTGTGGCA-TGC
* *
58597741 CACCAGAACAGAT-ATATGTGGCAGGGC
1 CACCAGAACAGATAATTTGTGGCA-TGC
*
58597768 CACCAGAATAGATAATTTGTGGCATAGC
1 CACCAGAACAGATAATTTGTGGCAT-GC
58597796 CACCAG
1 CACCAG
58597802 GACGCTTCCT
Statistics
Matches: 53, Mismatches: 6, Indels: 5
0.83 0.09 0.08
Matches are distributed among these distances:
27 23 0.43
28 23 0.43
29 7 0.13
ACGTcount: A:0.32, C:0.22, G:0.24, T:0.21
Consensus pattern (27 bp):
CACCAGAACAGATAATTTGTGGCATGC
Found at i:58602640 original size:40 final size:40
Alignment explanation
Indices: 58602556--58602776 Score: 211
Period size: 40 Copynumber: 5.5 Consensus size: 40
58602546 TTGAATGCTG
* * *
58602556 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
** *
58602595 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTATTAAT
1 -TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
58602636 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTAAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* * *
58602676 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTTA-AAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAG-TTACTAAT
**
58602716 TCCGGGTTAAGTCCCGAAGGCA-TTGTATGAGTTACT-AT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* * *
58602754 AACCGGGCTATGTCCCGAAGGCA
1 -TCCGGGTTAAGTCCCGAAGGCA
58602777 CTTGAACGAG
Statistics
Matches: 152, Mismatches: 22, Indels: 15
0.80 0.12 0.08
Matches are distributed among these distances:
38 4 0.03
39 26 0.17
40 110 0.72
41 12 0.08
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:58607279 original size:79 final size:80
Alignment explanation
Indices: 58607193--58607349 Score: 212
Period size: 79 Copynumber: 2.0 Consensus size: 80
58607183 AGCTCGGTTA
* * *
58607193 TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCACCAATGCCTTC
1 TAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGGATATAGTAACTTAGCA-CAAAGCCTTC
58607256 GGG-CTTAGCCCGGAAT
64 GGGACTTAGCCCGGAAT
** * *
58607272 TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATATGGTCACTTAGCACAAAGCCTTCGG
1 TAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGG
58607337 GACTTAGCCCGGA
66 GACTTAGCCCGGA
58607350 CATCATTCGA
Statistics
Matches: 68, Mismatches: 7, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
78 3 0.04
79 50 0.74
80 15 0.22
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.24
Consensus pattern (80 bp):
TAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGG
GACTTAGCCCGGAAT
Found at i:58607349 original size:40 final size:40
Alignment explanation
Indices: 58607146--58607349 Score: 220
Period size: 40 Copynumber: 5.1 Consensus size: 40
58607136 CGGAATTTAA
** * *
58607146 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGAGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
58607186 TCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
58607226 CCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
58607265 CCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
58607305 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
58607345 CCGGA
1 CCGGA
58607350 CATCATTCGA
Statistics
Matches: 138, Mismatches: 19, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.24
40 91 0.66
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:58613000 original size:55 final size:56
Alignment explanation
Indices: 58612935--58613049 Score: 137
Period size: 55 Copynumber: 2.1 Consensus size: 56
58612925 AGCATGGCTG
* *
58612935 CCAGATACAGA-AAATGTGACAGAGTCACCAAATACAGATATTTTGTGGCAGT-GCCA
1 CCAGATACAGATAAATGTGACAGAGCCACC-AATACAGATAATTTGTGGCA-TAGCCA
* * * *
58612991 CCAGA-ACAGATATATGTGGCAGGGCCACCAGTACAGATAATTTGTGGCATAGCCA
1 CCAGATACAGATAAATGTGACAGAGCCACCAATACAGATAATTTGTGGCATAGCCA
58613046 CCAG
1 CCAG
58613050 GACGCTTCCT
Statistics
Matches: 51, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
54 1 0.02
55 31 0.61
56 19 0.37
ACGTcount: A:0.35, C:0.22, G:0.23, T:0.20
Consensus pattern (56 bp):
CCAGATACAGATAAATGTGACAGAGCCACCAATACAGATAATTTGTGGCATAGCCA
Found at i:58613012 original size:27 final size:27
Alignment explanation
Indices: 58612968--58613049 Score: 103
Period size: 28 Copynumber: 3.0 Consensus size: 27
58612958 GTCACCAAAT
58612968 ACAGATATTTTGTGGCAGTGCCACCAGA
1 ACAGATA-TTTGTGGCAGTGCCACCAGA
* * *
58612996 ACAGATATATGTGGCAGGGCCACCAGT
1 ACAGATATTTGTGGCAGTGCCACCAGA
58613023 ACAGATAATTTGTGGCA-TAGCCACCAG
1 ACAGAT-ATTTGTGGCAGT-GCCACCAG
58613050 GACGCTTCCT
Statistics
Matches: 47, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
27 23 0.49
28 24 0.51
ACGTcount: A:0.30, C:0.22, G:0.26, T:0.22
Consensus pattern (27 bp):
ACAGATATTTGTGGCAGTGCCACCAGA
Found at i:58613045 original size:28 final size:27
Alignment explanation
Indices: 58612967--58613049 Score: 96
Period size: 27 Copynumber: 3.0 Consensus size: 27
58612957 AGTCACCAAA
*
58612967 TACAGATATTTTGTGGCAGTGCCACCAG
1 TACAGATAATTTGTGGCA-TGCCACCAG
* * *
58612995 AACAGAT-ATATGTGGCAGGGCCACCAG
1 TACAGATAATTTGTGGCA-TGCCACCAG
58613022 TACAGATAATTTGTGGCATAGCCACCAG
1 TACAGATAATTTGTGGCAT-GCCACCAG
58613050 GACGCTTCCT
Statistics
Matches: 46, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
27 23 0.50
28 23 0.50
ACGTcount: A:0.30, C:0.22, G:0.25, T:0.23
Consensus pattern (27 bp):
TACAGATAATTTGTGGCATGCCACCAG
Found at i:58613305 original size:95 final size:95
Alignment explanation
Indices: 58613142--58613331 Score: 380
Period size: 95 Copynumber: 2.0 Consensus size: 95
58613132 TGCTTTTCAG
58613142 ACAAAATTAACCCTAGGGGTATAAAGGTCATTTTGCATACATAGGGGTATAATAGTACATCTAAC
1 ACAAAATTAACCCTAGGGGTATAAAGGTCATTTTGCATACATAGGGGTATAATAGTACATCTAAC
58613207 TATTTCTAAGGTTTCCATGCATATCGTAGC
66 TATTTCTAAGGTTTCCATGCATATCGTAGC
58613237 ACAAAATTAACCCTAGGGGTATAAAGGTCATTTTGCATACATAGGGGTATAATAGTACATCTAAC
1 ACAAAATTAACCCTAGGGGTATAAAGGTCATTTTGCATACATAGGGGTATAATAGTACATCTAAC
58613302 TATTTCTAAGGTTTCCATGCATATCGTAGC
66 TATTTCTAAGGTTTCCATGCATATCGTAGC
58613332 CATTACGTTT
Statistics
Matches: 95, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
95 95 1.00
ACGTcount: A:0.34, C:0.17, G:0.18, T:0.32
Consensus pattern (95 bp):
ACAAAATTAACCCTAGGGGTATAAAGGTCATTTTGCATACATAGGGGTATAATAGTACATCTAAC
TATTTCTAAGGTTTCCATGCATATCGTAGC
Found at i:58616098 original size:56 final size:56
Alignment explanation
Indices: 58616038--58616174 Score: 202
Period size: 56 Copynumber: 2.4 Consensus size: 56
58616028 TCCCAGACAG
* * *
58616038 GGTCTTACTCGCACATATATATTGGAGTCACATATCGATGCCAACGTATAAAACGT
1 GGTCTTACTCGCACACATATATCGAAGTCACATATCGATGCCAACGTATAAAACGT
* *
58616094 GGTCTTACTCGTACACATATATCGAAGTCACATATCGATGCCAACGTATAAAACTT
1 GGTCTTACTCGCACACATATATCGAAGTCACATATCGATGCCAACGTATAAAACGT
* * *
58616150 GGTCTTACTCACAAACATGTATCGA
1 GGTCTTACTCGCACACATATATCGA
58616175 TGCTATGGTC
Statistics
Matches: 72, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
56 72 1.00
ACGTcount: A:0.33, C:0.23, G:0.16, T:0.28
Consensus pattern (56 bp):
GGTCTTACTCGCACACATATATCGAAGTCACATATCGATGCCAACGTATAAAACGT
Found at i:58617340 original size:14 final size:15
Alignment explanation
Indices: 58617323--58617351 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
58617313 GCACAAAAAT
58617323 TTCACACA-TATAAA
1 TTCACACATTATAAA
58617337 TTCACACATTATAAA
1 TTCACACATTATAAA
58617352 CACAGAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.48, C:0.21, G:0.00, T:0.31
Consensus pattern (15 bp):
TTCACACATTATAAA
Found at i:58621583 original size:39 final size:39
Alignment explanation
Indices: 58621477--58621584 Score: 162
Period size: 39 Copynumber: 2.8 Consensus size: 39
58621467 CCCGAAATAT
* * *
58621477 TTCCAGCACGTAGCCTGCAGACCTTAAGACCGGTTATAA
1 TTCCAGCACATAGCCTGCAGACCTTAAGTCCGGATATAA
*
58621516 TTCCAGCACATAGCCTGCGGACCTTAAGTCCGGATATAA
1 TTCCAGCACATAGCCTGCAGACCTTAAGTCCGGATATAA
* *
58621555 TTCTAGCACATAGCCTGCAGACCCTAAGTC
1 TTCCAGCACATAGCCTGCAGACCTTAAGTC
58621585 TAGATAAACA
Statistics
Matches: 62, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 62 1.00
ACGTcount: A:0.28, C:0.30, G:0.19, T:0.23
Consensus pattern (39 bp):
TTCCAGCACATAGCCTGCAGACCTTAAGTCCGGATATAA
Found at i:58627249 original size:6 final size:6
Alignment explanation
Indices: 58627231--58627352 Score: 126
Period size: 6 Copynumber: 19.8 Consensus size: 6
58627221 AAGAAACATT
58627231 ATCAGA A-CTAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGGTA A-CAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA
* * *
58627280 ATCAGA ATCAGA ACCAGA ATCAGA ATTAGGTA A-CAGA ATCAGA ATCAGT
1 ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA
58627329 ATCAGGTA AT-AGA ATCAGA ATCAG
1 ATCA-G-A ATCAGA ATCAGA ATCAG
58627353 GATGTGAATG
Statistics
Matches: 99, Mismatches: 6, Indels: 22
0.78 0.05 0.17
Matches are distributed among these distances:
5 8 0.08
6 77 0.78
7 8 0.08
8 6 0.06
ACGTcount: A:0.48, C:0.16, G:0.19, T:0.18
Consensus pattern (6 bp):
ATCAGA
Found at i:58627282 original size:31 final size:31
Alignment explanation
Indices: 58627245--58627352 Score: 132
Period size: 31 Copynumber: 3.5 Consensus size: 31
58627235 GAACTAGAAT
58627245 CAGAATCAGAATCAGAATCAGAATCAGGTAA
1 CAGAATCAGAATCAGAATCAGAATCAGGTAA
*
58627276 CAGAATCAGAATCAGAACCAGAATCA-G-AA
1 CAGAATCAGAATCAGAATCAGAATCAGGTAA
* *
58627305 TTAGGTAA-CAGAATCAGAATCAGTATCAGGTAA
1 -CA-G-AATCAGAATCAGAATCAGAATCAGGTAA
*
58627338 TAGAATCAGAATCAG
1 CAGAATCAGAATCAG
58627353 GATGTGAATG
Statistics
Matches: 67, Mismatches: 4, Indels: 12
0.81 0.05 0.14
Matches are distributed among these distances:
29 2 0.03
30 4 0.06
31 54 0.81
32 5 0.07
33 2 0.03
ACGTcount: A:0.47, C:0.16, G:0.19, T:0.18
Consensus pattern (31 bp):
CAGAATCAGAATCAGAATCAGAATCAGGTAA
Found at i:58627287 original size:37 final size:37
Alignment explanation
Indices: 58627240--58627346 Score: 162
Period size: 37 Copynumber: 2.9 Consensus size: 37
58627230 TATCAGAACT
58627240 AGAATCAGAATCAGAATCAGAATCAGAATCAGGTAAC
1 AGAATCAGAATCAGAATCAGAATCAGAATCAGGTAAC
* *
58627277 AGAATCAGAATCAGAACCAGAATCAGAATTAGGTAAC
1 AGAATCAGAATCAGAATCAGAATCAGAATCAGGTAAC
*
58627314 AGAATCAGAATCAGTATCAGGTAAT-AGAATCAG
1 AGAATCAGAATCAGAATCA-G-AATCAGAATCAG
58627347 AATCAGGATG
Statistics
Matches: 63, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
37 52 0.83
38 8 0.13
39 3 0.05
ACGTcount: A:0.48, C:0.15, G:0.20, T:0.18
Consensus pattern (37 bp):
AGAATCAGAATCAGAATCAGAATCAGAATCAGGTAAC
Found at i:58627316 original size:25 final size:25
Alignment explanation
Indices: 58627240--58627352 Score: 119
Period size: 25 Copynumber: 4.6 Consensus size: 25
58627230 TATCAGAACT
58627240 AGAATCAGAATCAGAATCA-G-AATC
1 AGAATCAGAATCAGAATCAGGTAA-C
58627264 AGAATCAGGTAA-CAGAATCA-G-AATC
1 AGAATCA-G-AATCAGAATCAGGTAA-C
* *
58627289 AGAACCAGAATCAGAATTAGGTAAC
1 AGAATCAGAATCAGAATCAGGTAAC
* *
58627314 AGAATCAGAATCAGTATCAGGTAAT
1 AGAATCAGAATCAGAATCAGGTAAC
58627339 AGAATCAGAATCAG
1 AGAATCAGAATCAG
58627353 GATGTGAATG
Statistics
Matches: 78, Mismatches: 6, Indels: 9
0.84 0.06 0.10
Matches are distributed among these distances:
23 2 0.03
24 15 0.19
25 57 0.73
26 4 0.05
ACGTcount: A:0.48, C:0.15, G:0.19, T:0.18
Consensus pattern (25 bp):
AGAATCAGAATCAGAATCAGGTAAC
Found at i:58627522 original size:27 final size:26
Alignment explanation
Indices: 58627474--58627533 Score: 66
Period size: 27 Copynumber: 2.3 Consensus size: 26
58627464 GCGAGGCTGC
*
58627474 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
58627501 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
*
58627527 TAGATAT
1 CAGATAT
58627534 ATATATGTGG
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 7 0.25
27 21 0.75
ACGTcount: A:0.35, C:0.18, G:0.23, T:0.23
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:58628240 original size:27 final size:27
Alignment explanation
Indices: 58627802--58628239 Score: 520
Period size: 27 Copynumber: 16.3 Consensus size: 27
58627792 GAGGAAAAAT
* * * *
58627802 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
58627829 GATAATTTTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * **
58627856 GGTATTTCTACCGTACAACGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
58627883 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
58627910 AGTAATTCTACCCTATAGTGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
58627937 GATAATTCTACCCTACAGTGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * **
58627964 GATAATTTTACCCTACAGTTGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
58627991 GGTAATTCTACCCTACAGGGATATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
58628018 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
58628045 GGTAATTCTACCCTACAGGGGTACTCC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
58628072 AGTAATTCTACCCTACAAGGGTA-TTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
58628098 TAGTAATTCTACCCTACAAGGATATTTC
1 -GGTAATTCTACCCTACAGGGGTATTTC
* * *
58628126 GGTAATTCTAGCATACAGGGGTATTGC
1 GGTAATTCTACCCTACAGGGGTATTTC
58628153 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
58628180 GGTATTTCTACCCTACAAGGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* **
58628207 GGTATTTCTACCCTA-AAAGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
58628233 GGTAATT
1 GGTAATT
58628240 TTATAAATCG
Statistics
Matches: 358, Mismatches: 51, Indels: 5
0.86 0.12 0.01
Matches are distributed among these distances:
26 17 0.05
27 338 0.94
28 3 0.01
ACGTcount: A:0.25, C:0.21, G:0.18, T:0.35
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:58628308 original size:27 final size:27
Alignment explanation
Indices: 58628278--58628510 Score: 164
Period size: 27 Copynumber: 8.6 Consensus size: 27
58628268 TGTACATCAG
* *
58628278 GGGTACTTTGGCAATTTTACAAGTCAA
1 GGGTATTTTGGTAATTTTACAAGTCAA
*** * *
58628305 GGGTATTTCAATAATTTTACAGGTCGA
1 GGGTATTTTGGTAATTTTACAAGTCAA
* * * * *
58628332 GGGTATTTTAGAAATTTCACAAATCAG
1 GGGTATTTTGGTAATTTTACAAGTCAA
* *
58628359 GGGTATTTTGATAATTTTACAA-ACTAA
1 GGGTATTTTGGTAATTTTACAAGTC-AA
** * *
58628386 GGGTATTTTGGTAATTTTTTAAATAAA
1 GGGTATTTTGGTAATTTTACAAGTCAA
* * **
58628413 GGGTATTTTAGTAATTTTACAA-ACTG
1 GGGTATTTTGGTAATTTTACAAGTCAA
** **
58628439 GGGATATTTTGGTAATTTTGTAAACCAA
1 GGG-TATTTTGGTAATTTTACAAGTCAA
* ** *
58628467 GGGTATTTCGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAGTCAA
58628494 GGGTATTTTGGTAATTT
1 GGGTATTTTGGTAATTT
58628511 GGTAAACTAA
Statistics
Matches: 158, Mismatches: 44, Indels: 8
0.75 0.21 0.04
Matches are distributed among these distances:
26 4 0.03
27 150 0.95
28 4 0.03
ACGTcount: A:0.31, C:0.09, G:0.21, T:0.39
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAGTCAA
Found at i:58628389 original size:54 final size:54
Alignment explanation
Indices: 58628225--58628510 Score: 213
Period size: 54 Copynumber: 5.3 Consensus size: 54
58628215 TACCCTAAAA
* * **** * *
58628225 GGTATTTCGGTAATTTTATAAATCGAGGGTAAAACGATAATTTTGTAC-ATC-AGG
1 GGTATTTTGGTAATTTTATAAATCAAGGGTATTTTGATAA-TTT-TACAAACTAAG
* * * * ** ** *
58628279 GGTACTTTGGCAATTTTACAAGTCAAGGGTATTTCAATAATTTTAC-AGGTCGAG
1 GGTATTTTGGTAATTTTATAAATCAAGGGTATTTTGATAATTTTACAAACT-AAG
* * * * *
58628333 GGTATTTTAGAAATTTCACAAATCAGGGGTATTTTGATAATTTTACAAACTAAG
1 GGTATTTTGGTAATTTTATAAATCAAGGGTATTTTGATAATTTTACAAACTAAG
* * *
58628387 GGTATTTTGGTAATTTTTTAAATAAAGGGTATTTT-AGTAATTTTACAAACT-GG
1 GGTATTTTGGTAATTTTATAAATCAAGGGTATTTTGA-TAATTTTACAAACTAAG
* * * * * *
58628440 GGATATTTTGGTAATTTTGTAAACCAAGGGTATTTCGGTAATTTTACAAACCAGG
1 GG-TATTTTGGTAATTTTATAAATCAAGGGTATTTTGATAATTTTACAAACTAAG
58628495 GGTATTTTGGTAATTT
1 GGTATTTTGGTAATTT
58628511 GGTAAACTAA
Statistics
Matches: 186, Mismatches: 39, Indels: 14
0.78 0.16 0.06
Matches are distributed among these distances:
52 4 0.02
53 7 0.04
54 169 0.91
55 6 0.03
ACGTcount: A:0.32, C:0.09, G:0.21, T:0.39
Consensus pattern (54 bp):
GGTATTTTGGTAATTTTATAAATCAAGGGTATTTTGATAATTTTACAAACTAAG
Found at i:58628401 original size:81 final size:81
Alignment explanation
Indices: 58628273--58628489 Score: 231
Period size: 81 Copynumber: 2.7 Consensus size: 81
58628263 AATTTTGTAC
* * * ** ** **
58628273 ATCAGGGGTACTTTGGCAATTTTAC-AAGTCAAGGGTATTTCAATAATTTTACAGGTCGAGGGTA
1 ATCAGGGGTATTTTGGTAATTTTACAAACT-AAGGGTATTTCGGTAATTTTACAAATAAAGGGTA
58628337 TTTTAGAAATTTCACAA
65 TTTTAGAAATTTCACAA
* * **
58628354 ATCAGGGGTATTTTGATAATTTTACAAACTAAGGGTATTTTGGTAATTTTTTAAATAAAGGGTAT
1 ATCAGGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTCGGTAATTTTACAAATAAAGGGTAT
* *
58628419 TTTAGTAATTTTACAA
66 TTTAGAAATTTCACAA
* ** *
58628435 A-CTGGGGATATTTTGGTAATTTTGTAAACCAAGGGTATTTCGGTAATTTTACAAA
1 ATCAGGGG-TATTTTGGTAATTTTACAAACTAAGGGTATTTCGGTAATTTTACAAA
58628490 CCAGGGGTAT
Statistics
Matches: 111, Mismatches: 23, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
80 5 0.05
81 103 0.93
82 3 0.03
ACGTcount: A:0.33, C:0.09, G:0.20, T:0.39
Consensus pattern (81 bp):
ATCAGGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTCGGTAATTTTACAAATAAAGGGTAT
TTTAGAAATTTCACAA
Found at i:58630502 original size:19 final size:19
Alignment explanation
Indices: 58630478--58630544 Score: 75
Period size: 19 Copynumber: 3.6 Consensus size: 19
58630468 CTAGAATCAA
58630478 AATCAAAATCAAGTAACAG
1 AATCAAAATCAAGTAACAG
58630497 AATCAAAATC-AG-AACCAG
1 AATCAAAATCAAGTAA-CAG
* * *
58630515 AATCAGAATTAGGTAACAG
1 AATCAAAATCAAGTAACAG
*
58630534 AATCAGAATCA
1 AATCAAAATCA
58630545 GTATCAGGTA
Statistics
Matches: 41, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
17 2 0.05
18 13 0.32
19 24 0.59
20 2 0.05
ACGTcount: A:0.54, C:0.16, G:0.13, T:0.16
Consensus pattern (19 bp):
AATCAAAATCAAGTAACAG
Found at i:58630519 original size:31 final size:31
Alignment explanation
Indices: 58630470--58630572 Score: 86
Period size: 31 Copynumber: 3.3 Consensus size: 31
58630460 TATCAGAACT
* * *
58630470 AGAATCAAAATCAAAATCAAGTAACAGAATC
1 AGAATCAGAACCAGAATCAAGTAACAGAATC
* *
58630501 AAAATCAGAACCAGAATC-AG-AATTAGGTAA-C
1 AGAATCAGAACCAGAATCAAGTAA-CA-G-AATC
* * *
58630532 AGAATCAGAATCAGTATCAGGTAACAGAATC
1 AGAATCAGAACCAGAATCAAGTAACAGAATC
58630563 AGAATCAGAA
1 AGAATCAGAA
58630573 TGTGAATGCA
Statistics
Matches: 56, Mismatches: 10, Indels: 12
0.72 0.13 0.15
Matches are distributed among these distances:
29 2 0.04
30 5 0.09
31 43 0.77
32 4 0.07
33 2 0.04
ACGTcount: A:0.52, C:0.16, G:0.16, T:0.17
Consensus pattern (31 bp):
AGAATCAGAACCAGAATCAAGTAACAGAATC
Found at i:58630523 original size:6 final size:6
Alignment explanation
Indices: 58630461--58630573 Score: 81
Period size: 6 Copynumber: 18.3 Consensus size: 6
58630451 AAGAAACATT
* * *
58630461 ATCAGA A-CTAGA ATCAAA ATCAAA ATCAAGTA A-CAGA ATCAAA ATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATC-AG-A ATCAGA ATCAGA ATCAGA
* * *
58630510 ACCAGA ATCAGA ATTAGGTA A-CAGA ATCAGA ATCAGT ATCAGGTA A-CAGA
1 ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA
58630560 ATCAGA ATCAGA AT
1 ATCAGA ATCAGA AT
58630574 GTGAATGCAA
Statistics
Matches: 86, Mismatches: 10, Indels: 22
0.73 0.08 0.19
Matches are distributed among these distances:
5 7 0.08
6 66 0.77
7 8 0.09
8 5 0.06
ACGTcount: A:0.51, C:0.16, G:0.15, T:0.18
Consensus pattern (6 bp):
ATCAGA
Found at i:58630540 original size:25 final size:25
Alignment explanation
Indices: 58630506--58630573 Score: 109
Period size: 25 Copynumber: 2.7 Consensus size: 25
58630496 GAATCAAAAT
* *
58630506 CAGAACCAGAATCAGAATTAGGTAA
1 CAGAATCAGAATCAGAATCAGGTAA
*
58630531 CAGAATCAGAATCAGTATCAGGTAA
1 CAGAATCAGAATCAGAATCAGGTAA
58630556 CAGAATCAGAATCAGAAT
1 CAGAATCAGAATCAGAAT
58630574 GTGAATGCAA
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 39 1.00
ACGTcount: A:0.47, C:0.16, G:0.19, T:0.18
Consensus pattern (25 bp):
CAGAATCAGAATCAGAATCAGGTAA
Found at i:58630740 original size:27 final size:26
Alignment explanation
Indices: 58630692--58630751 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
58630682 GCGAGGCTGC
*
58630692 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
58630719 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
58630745 CAGATAT
1 CAGATAT
58630752 ATATATGTGG
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:58631051 original size:27 final size:27
Alignment explanation
Indices: 58631021--58631406 Score: 415
Period size: 27 Copynumber: 14.3 Consensus size: 27
58631011 GGGCAAAATT
* * * *
58631021 GTAATTTTACCCCACAAGGGTATCTCA
1 GTAATTTTACCCTACAGGGGTATTTCG
58631048 GTAATTTTACCCTACAGGGGTATTTC-
1 GTAATTTTACCCTACAGGGGTATTTCG
* *
58631074 GTTATTTCTACCCTACAGGGGTATTTCA
1 GTAATTT-TACCCTACAGGGGTATTTCG
* *
58631102 GTAATTCTACCCCTACAAGGGTATTTCG
1 GTAATTTTA-CCCTACAGGGGTATTTCG
* *
58631130 ATAATTCTACCCTACAGGGGTATTTCG
1 GTAATTTTACCCTACAGGGGTATTTCG
*
58631157 GTAATTTTACCCTACAGGGGTATTTTG
1 GTAATTTTACCCTACAGGGGTATTTCG
58631184 GT-ATTTCTACCCTACAGGGGTATTTCG
1 GTAATTT-TACCCTACAGGGGTATTTCG
* * *
58631211 ATAATTCTACCCTATAGGGGTATTTCG
1 GTAATTTTACCCTACAGGGGTATTTCG
* *
58631238 GTAATTCTACCCTACAAGGGTA-TTCTG
1 GTAATTTTACCCTACAGGGGTATTTC-G
* * **
58631265 ATAATTCTACCCTACAGGGGTACGTCG
1 GTAATTTTACCCTACAGGGGTATTTCG
* * * *
58631292 ATAATTCTACCATACAGGGGTATTGCG
1 GTAATTTTACCCTACAGGGGTATTTCG
* *
58631319 ATAATTCTACCCTACA-GGGTATTTCG
1 GTAATTTTACCCTACAGGGGTATTTCG
*
58631345 GT-ATTTCTACCCTACAAGGGTATTTCG
1 GTAATTT-TACCCTACAGGGGTATTTCG
* *
58631372 GT-ATTTCAACCCTACAAGGGTATTTCG
1 GTAATTT-TACCCTACAGGGGTATTTCG
58631399 GTAATTTT
1 GTAATTTT
58631407 GTAAATCGAG
Statistics
Matches: 316, Mismatches: 33, Indels: 20
0.86 0.09 0.05
Matches are distributed among these distances:
25 3 0.01
26 32 0.10
27 243 0.77
28 38 0.12
ACGTcount: A:0.25, C:0.21, G:0.19, T:0.35
Consensus pattern (27 bp):
GTAATTTTACCCTACAGGGGTATTTCG
Found at i:58631194 original size:54 final size:54
Alignment explanation
Indices: 58631024--58631401 Score: 465
Period size: 54 Copynumber: 7.0 Consensus size: 54
58631014 CAAAATTGTA
* * * * * *
58631024 ATTT-TACCCCACAAGGGTATCTCAGTAATTTTACCCTACAGGGGTATTTCGTT
1 ATTTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGGT
* * *
58631077 ATTTCTACCCTACAGGGGTATTTCAGTAATTCTACCCCTACAAGGGTATTTCGAT
1 ATTTCTACCCTACAGGGGTATTTCGGTAATTCTA-CCCTACAGGGGTATTTCGGT
* * *
58631132 AATTCTACCCTACAGGGGTATTTCGGTAATTTTACCCTACAGGGGTATTTTGGT
1 ATTTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGGT
* *
58631186 ATTTCTACCCTACAGGGGTATTTCGATAATTCTACCCTATAGGGGTATTTCGGT
1 ATTTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGGT
* * * ** *
58631240 AATTCTACCCTACAAGGGTA-TTCTGATAATTCTACCCTACAGGGGTACGTCGAT
1 ATTTCTACCCTACAGGGGTATTTC-GGTAATTCTACCCTACAGGGGTATTTCGGT
* * * *
58631294 AATTCTACCATACAGGGGTATTGCGATAATTCTACCCTACA-GGGTATTTCGGT
1 ATTTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGGT
* * * *
58631347 ATTTCTACCCTACAAGGGTATTTCGGTATTTCAACCCTACAAGGGTATTTCGGT
1 ATTTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGGT
58631401 A
1 A
58631402 ATTTTGTAAA
Statistics
Matches: 284, Mismatches: 36, Indels: 9
0.86 0.11 0.03
Matches are distributed among these distances:
53 50 0.18
54 183 0.64
55 51 0.18
ACGTcount: A:0.25, C:0.22, G:0.19, T:0.34
Consensus pattern (54 bp):
ATTTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGGT
Found at i:58631238 original size:81 final size:81
Alignment explanation
Indices: 58631024--58631406 Score: 479
Period size: 81 Copynumber: 4.7 Consensus size: 81
58631014 CAAAATTGTA
* * * *
58631024 ATTT-TACCCCACAAGGGTATCTC-AGTAATTTTACCCTACAGGGGTATTTC-GTTATTTCTACC
1 ATTTCTACCCTACAAGGGTATTTCGA-TAATTCTACCCTACAGGGGTATTTCGGTAATTT-TACC
*
58631086 CTACAGGGGTATTTCAGT
64 CTACAGGGGTATTTCGGT
*
58631104 AATTCTACCCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCGGTAATTTTACCC
1 ATTTCTA-CCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCGGTAATTTTACCC
*
58631169 TACAGGGGTATTTTGGT
65 TACAGGGGTATTTCGGT
* * *
58631186 ATTTCTACCCTACAGGGGTATTTCGATAATTCTACCCTATAGGGGTATTTCGGTAATTCTACCCT
1 ATTTCTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCGGTAATTTTACCCT
* *
58631251 ACAAGGGTA-TTCTGAT
66 ACAGGGGTATTTC-GGT
* * ** * * * *
58631267 AATTCTACCCTACAGGGGTACGTCGATAATTCTACCATACAGGGGTATTGCGATAATTCTACCCT
1 ATTTCTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCGGTAATTTTACCCT
58631332 ACA-GGGTATTTCGGT
66 ACAGGGGTATTTCGGT
* * * *
58631347 ATTTCTACCCTACAAGGGTATTTCGGTATTTCAACCCTACAAGGGTATTTCGGTAATTTT
1 ATTTCTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCGGTAATTTT
58631407 GTAAATCGAG
Statistics
Matches: 263, Mismatches: 34, Indels: 12
0.85 0.11 0.04
Matches are distributed among these distances:
80 60 0.23
81 131 0.50
82 65 0.25
83 7 0.03
ACGTcount: A:0.25, C:0.21, G:0.19, T:0.35
Consensus pattern (81 bp):
ATTTCTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCGGTAATTTTACCCT
ACAGGGGTATTTCGGT
Found at i:58631418 original size:27 final size:27
Alignment explanation
Indices: 58631386--58631702 Score: 258
Period size: 27 Copynumber: 11.7 Consensus size: 27
58631376 TTCAACCCTA
* *
58631386 CAAGGGTATTTCGGTAATTTTGTAAAT
1 CAAGGGTATTTTGGTAATTTTATAAAT
* *** * *
58631413 CGAGGGTAAAATGATAATTCTATAAAT
1 CAAGGGTATTTTGGTAATTTTATAAAT
* * * *
58631440 CAGGGGTACTTTGGTAATTTTACAAGT
1 CAAGGGTATTTTGGTAATTTTATAAAT
* *** * **
58631467 CGAGGGTATTTCAATAATTTTACAGGT
1 CAAGGGTATTTTGGTAATTTTATAAAT
* ** *
58631494 CGAGGGTATTTCAGTAATTTCATAAAT
1 CAAGGGTATTTTGGTAATTTTATAAAT
* * * * *
58631521 CAGGGGTATTTTGATAATTGTACAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAT
* *
58631548 CAGGGGTATTTTGGTAATTTTACAAAT
1 CAAGGGTATTTTGGTAATTTTATAAAT
* *
58631575 TAGGGGTATTTTGGTAATTTTATAAAT
1 CAAGGGTATTTTGGTAATTTTATAAAT
* * *
58631602 AAAGGGTATTTTAGTAATTTTACAAA-
1 CAAGGGTATTTTGGTAATTTTATAAAT
* *
58631628 CTAAGGGTATTTTGGTAATTTTGTAAAC
1 C-AAGGGTATTTTGGTAATTTTATAAAT
* *
58631656 CAAGGGTATTTTGGTAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAT
*
58631683 CAAGGGTATTTCGGTAATTT
1 CAAGGGTATTTTGGTAATTT
58631703 GGTAAACTAA
Statistics
Matches: 234, Mismatches: 54, Indels: 4
0.80 0.18 0.01
Matches are distributed among these distances:
27 233 1.00
28 1 0.00
ACGTcount: A:0.32, C:0.08, G:0.21, T:0.38
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTTTATAAAT
Found at i:58633694 original size:6 final size:6
Alignment explanation
Indices: 58633652--58633763 Score: 79
Period size: 6 Copynumber: 18.3 Consensus size: 6
58633642 AAGAAACATT
* *
58633652 ATCAGA A-CTAGA ATCAAA ATCAAA ATCAAGTA A-CAGA ATCAGA ATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATC-AG-A ATCAGA ATCAGA ATCAGA
* * * * *
58633701 ACCAGA ATTAGA ATTAGGTA AT-AGA ATCAGA ATCAGT ATCATGT A-CAGA
1 ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA ATCA-GA ATCAGA
58633750 ATCAGA ATCAGA AT
1 ATCAGA ATCAGA AT
58633764 GTGAATGTAA
Statistics
Matches: 89, Mismatches: 7, Indels: 20
0.77 0.06 0.17
Matches are distributed among these distances:
5 8 0.09
6 68 0.76
7 8 0.09
8 5 0.06
ACGTcount: A:0.50, C:0.14, G:0.15, T:0.21
Consensus pattern (6 bp):
ATCAGA
Found at i:58633697 original size:19 final size:19
Alignment explanation
Indices: 58633669--58633735 Score: 66
Period size: 19 Copynumber: 3.6 Consensus size: 19
58633659 CTAGAATCAA
*
58633669 AATCAAAATCAAGTAACAG
1 AATCAGAATCAAGTAACAG
58633688 AATCAGAATC-AG-AACCAG
1 AATCAGAATCAAGTAA-CAG
* * * *
58633706 AATTAGAATTAGGTAATAG
1 AATCAGAATCAAGTAACAG
58633725 AATCAGAATCA
1 AATCAGAATCA
58633736 GTATCATGTA
Statistics
Matches: 38, Mismatches: 7, Indels: 6
0.75 0.14 0.12
Matches are distributed among these distances:
17 2 0.05
18 13 0.34
19 21 0.55
20 2 0.05
ACGTcount: A:0.52, C:0.13, G:0.15, T:0.19
Consensus pattern (19 bp):
AATCAGAATCAAGTAACAG
Found at i:58633930 original size:27 final size:26
Alignment explanation
Indices: 58633882--58633941 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
58633872 GCGAGGTTGC
*
58633882 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
58633909 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
58633935 CAGATAT
1 CAGATAT
58633942 ATATATGTGG
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:58634256 original size:54 final size:54
Alignment explanation
Indices: 58634210--58634593 Score: 475
Period size: 54 Copynumber: 7.1 Consensus size: 54
58634200 GGGGCAAAAT
* * *
58634210 GGTAATTTTACCCCACAAGGGTATCTCGATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTC
* * * *
58634264 AGTAATTTTACCCTACAA-GGTATTTCGATAATTCTATCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTC
* * * * * *
58634317 GATAATTCTTCCCTATAAGGGTATTTCGGTAATTTTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTC
* * *
58634371 GGTAATTCTACCCTACAGGGGTATTTCGATAATTTTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTC
* * *
58634425 GGTAATTCTATCCAACAAGGGTATTGT-GATAATTCTACCCTACAGGGGTACTTC
1 GGTAATTCTACCCTACAAGGGTATT-TCGATAATTCTACCCTACAGGGGTATTTC
* * * *
58634479 GGTAATTCTACCATACAGGGGTATTGCGATAATTCTACCCTACAGGGGTATTCC
1 GGTAATTCTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTC
* * * * * * *
58634533 GATATTTCTACCCTACAAGGGTATTTCGGTATTTCAACCCTACAAGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTC
58634587 GGTAATT
1 GGTAATT
58634594 TTGTAAATCG
Statistics
Matches: 279, Mismatches: 48, Indels: 6
0.84 0.14 0.02
Matches are distributed among these distances:
53 45 0.16
54 233 0.84
55 1 0.00
ACGTcount: A:0.26, C:0.20, G:0.19, T:0.35
Consensus pattern (54 bp):
GGTAATTCTACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTC
Found at i:58634590 original size:27 final size:27
Alignment explanation
Indices: 58634212--58634585 Score: 421
Period size: 27 Copynumber: 13.9 Consensus size: 27
58634202 GGCAAAATGG
* * *
58634212 TAATTTTACCCCACAAGGGTATCTCGA
1 TAATTCTACCCTACAAGGGTATTTCGA
*
58634239 TAATTCTACCCTACAGGGGTATTTC-A
1 TAATTCTACCCTACAAGGGTATTTCGA
*
58634265 GTAATTTTACCCTACAA-GGTATTTCGA
1 -TAATTCTACCCTACAAGGGTATTTCGA
*
58634292 TAATTCTATCCTACAAGGGTATTTCGA
1 TAATTCTACCCTACAAGGGTATTTCGA
* * *
58634319 TAATTCTTCCCTATAAGGGTATTTCGG
1 TAATTCTACCCTACAAGGGTATTTCGA
* * * *
58634346 TAATTTTACCCTACAGGGGTATTTTGG
1 TAATTCTACCCTACAAGGGTATTTCGA
*
58634373 TAATTCTACCCTACAGGGGTATTTCGA
1 TAATTCTACCCTACAAGGGTATTTCGA
* * * *
58634400 TAATTTTACCCTATAGGGGTATTTCGG
1 TAATTCTACCCTACAAGGGTATTTCGA
* *
58634427 TAATTCTATCCAACAAGGGTATTGT-GA
1 TAATTCTACCCTACAAGGGTATT-TCGA
* * *
58634454 TAATTCTACCCTACAGGGGTACTTCGG
1 TAATTCTACCCTACAAGGGTATTTCGA
* * *
58634481 TAATTCTACCATACAGGGGTATTGCGA
1 TAATTCTACCCTACAAGGGTATTTCGA
* *
58634508 TAATTCTACCCTACAGGGGTATTCCGA
1 TAATTCTACCCTACAAGGGTATTTCGA
* *
58634535 TATTTCTACCCTACAAGGGTATTTCGG
1 TAATTCTACCCTACAAGGGTATTTCGA
* *
58634562 TATTTCAACCCTACAAGGGTATTT
1 TAATTCTACCCTACAAGGGTATTT
58634586 TGGTAATTTT
Statistics
Matches: 297, Mismatches: 45, Indels: 10
0.84 0.13 0.03
Matches are distributed among these distances:
26 24 0.08
27 272 0.92
28 1 0.00
ACGTcount: A:0.26, C:0.20, G:0.18, T:0.35
Consensus pattern (27 bp):
TAATTCTACCCTACAAGGGTATTTCGA
Found at i:58634607 original size:27 final size:27
Alignment explanation
Indices: 58634577--58634870 Score: 204
Period size: 27 Copynumber: 10.9 Consensus size: 27
58634567 CAACCCTACA
**
58634577 AGGGTATTTTGGTAATTTTGTAAATCG
1 AGGGTATTTTGGTAATTTTACAAATCG
*** * * *
58634604 AGGGTAAAATGATAATTCTATAAATC-
1 AGGGTATTTTGGTAATTTTACAAATCG
* * *
58634630 AGGGGTACTTTGGTAAATTTACAAGTCG
1 A-GGGTATTTTGGTAATTTTACAAATCG
** **
58634658 AGGGTATTTTAATAATTTTACAGGTCG
1 AGGGTATTTTGGTAATTTTACAAATCG
** * *
58634685 AGGGTATTTCAGTAATTTCACAAAT-T
1 AGGGTATTTTGGTAATTTTACAAATCG
* *
58634711 AGGGGTATTTTGATAATTTTACAAA-CC
1 A-GGGTATTTTGGTAATTTTACAAATCG
58634738 AGGGGTATTTTGGTAATTTTACAAA-CTG
1 A-GGGTATTTTGGTAATTTTACAAATC-G
* * * **
58634766 GGGGTATTTTTGTAATTTTATAAATAA
1 AGGGTATTTTGGTAATTTTACAAATCG
* *
58634793 AGGGTATTTTAGTAATTTTACAAA-CA
1 AGGGTATTTTGGTAATTTTACAAATCG
* * *
58634819 AGGGGTATTTTGGTAATTTTATAAACCA
1 A-GGGTATTTTGGTAATTTTACAAATCG
*
58634847 ATGGCT-TTTTGGTAATTTTACAAA
1 A-GGGTATTTTGGTAATTTTACAAA
58634871 CAAGGGGAAT
Statistics
Matches: 213, Mismatches: 46, Indels: 16
0.77 0.17 0.06
Matches are distributed among these distances:
26 4 0.02
27 202 0.95
28 7 0.03
ACGTcount: A:0.33, C:0.07, G:0.20, T:0.39
Consensus pattern (27 bp):
AGGGTATTTTGGTAATTTTACAAATCG
Found at i:58634744 original size:54 final size:54
Alignment explanation
Indices: 58634613--58634891 Score: 233
Period size: 54 Copynumber: 5.2 Consensus size: 54
58634603 GAGGGTAAAA
* * * * * * * *
58634613 TGATAATTCTATAAATCAGGGGTACTTTGGTAAATTTACAAGTCGA-GGGTATTT
1 TGATAATTTTACAAACCAGGGGTATTTTAGTAATTTTACAA-ACAAGGGGTATTT
* *** * * **
58634667 TAATAATTTTACAGGTC-GAGGGTATTTCAGTAATTTCACAAATTAGGGGTATTT
1 TGATAATTTTACAAACCAG-GGGTATTTTAGTAATTTTACAAACAAGGGGTATTT
* **
58634721 TGATAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAACTGGGGGTATTTT
1 TGATAATTTTACAAACCAGGGGTATTTTAGTAATTTTACAAACAAGGGGTA-TTT
* ** *
58634776 TG-TAATTTTATAAATAAAGGGTATTTTAGTAATTTTACAAACAAGGGGTATTT
1 TGATAATTTTACAAACCAGGGGTATTTTAGTAATTTTACAAACAAGGGGTATTT
* * * * * *
58634829 TGGTAATTTTATAAACCAATGGCT-TTTTGGTAATTTTACAAACAAGGGGAATTT
1 TGATAATTTTACAAACC-AGGGGTATTTTAGTAATTTTACAAACAAGGGGTATTT
58634883 TGATAATTT
1 TGATAATTT
58634892 GGTAAACTAA
Statistics
Matches: 183, Mismatches: 36, Indels: 12
0.79 0.16 0.05
Matches are distributed among these distances:
53 7 0.04
54 166 0.91
55 10 0.05
ACGTcount: A:0.33, C:0.08, G:0.20, T:0.40
Consensus pattern (54 bp):
TGATAATTTTACAAACCAGGGGTATTTTAGTAATTTTACAAACAAGGGGTATTT
Found at i:58634871 original size:27 final size:27
Alignment explanation
Indices: 58634686--58634891 Score: 225
Period size: 27 Copynumber: 7.6 Consensus size: 27
58634676 TACAGGTCGA
** * **
58634686 GGGTATTTCAGTAATTTCACAAATTAG
1 GGGTATTTTGGTAATTTTACAAACAAG
* *
58634713 GGGTATTTTGATAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACAAG
**
58634740 GGGTATTTTGGTAATTTTACAAACTGG
1 GGGTATTTTGGTAATTTTACAAACAAG
* * * *
58634767 GGGTATTTTTGTAATTTTATAAATAAA
1 GGGTATTTTGGTAATTTTACAAACAAG
*
58634794 GGGTATTTTAGTAATTTTACAAACAAG
1 GGGTATTTTGGTAATTTTACAAACAAG
* *
58634821 GGGTATTTTGGTAATTTTATAAACCAAT
1 GGGTATTTTGGTAATTTTACAAA-CAAG
*
58634849 GGCT-TTTTGGTAATTTTACAAACAAG
1 GGGTATTTTGGTAATTTTACAAACAAG
* *
58634875 GGGAATTTTGATAATTT
1 GGGTATTTTGGTAATTT
58634892 GGTAAACTAA
Statistics
Matches: 149, Mismatches: 28, Indels: 4
0.82 0.15 0.02
Matches are distributed among these distances:
26 5 0.03
27 138 0.93
28 6 0.04
ACGTcount: A:0.33, C:0.07, G:0.19, T:0.41
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACAAG
Found at i:58636859 original size:6 final size:6
Alignment explanation
Indices: 58636841--58636936 Score: 99
Period size: 6 Copynumber: 15.7 Consensus size: 6
58636831 AAGAAACATT
*
58636841 ATCAGA A-CTAGA ATCAGA ATCAGA ATCAGA ATCAGA ACCAGA ATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA
* *
58636889 ATTAGGTA A-CAGA ATCAGA ATCAGA ATTAGGTA A-CAGA ATCAGA ATCA
1 ATCA-G-A ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCA
58636937 AAATGTGAAT
Statistics
Matches: 76, Mismatches: 6, Indels: 16
0.78 0.06 0.16
Matches are distributed among these distances:
5 5 0.07
6 62 0.82
7 5 0.07
8 4 0.05
ACGTcount: A:0.49, C:0.16, G:0.18, T:0.18
Consensus pattern (6 bp):
ATCAGA
Found at i:58636907 original size:25 final size:25
Alignment explanation
Indices: 58636850--58636936 Score: 133
Period size: 25 Copynumber: 3.5 Consensus size: 25
58636840 TATCAGAACT
*
58636850 AGAATCAGAATCAGAATCA-G-AATC
1 AGAATCAGAATCAGAATTAGGTAA-C
*
58636874 AGAACCAGAATCAGAATTAGGTAAC
1 AGAATCAGAATCAGAATTAGGTAAC
58636899 AGAATCAGAATCAGAATTAGGTAAC
1 AGAATCAGAATCAGAATTAGGTAAC
58636924 AGAATCAGAATCA
1 AGAATCAGAATCA
58636937 AAATGTGAAT
Statistics
Matches: 58, Mismatches: 3, Indels: 3
0.91 0.05 0.05
Matches are distributed among these distances:
24 17 0.29
25 39 0.67
26 2 0.03
ACGTcount: A:0.49, C:0.15, G:0.18, T:0.17
Consensus pattern (25 bp):
AGAATCAGAATCAGAATTAGGTAAC
Done.