Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100714657
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 3970000 characters in sequence are not A, C, G, or T
File 19 of 318
Found at i:7367230 original size:24 final size:25
Alignment explanation
Indices: 7367197--7367256 Score: 79
Period size: 24 Copynumber: 2.4 Consensus size: 25
7367187 CATATTTTTC
*
7367197 AAATAGATGAACTAATTTTTTT-AAT
1 AAATAAATGAACT-ATTTTTTTGAAT
*
7367222 -ATTAAATGAACTATTTTTTTGAAT
1 AAATAAATGAACTATTTTTTTGAAT
7367246 AAATAAATGAA
1 AAATAAATGAA
7367257 AAACAAGAGT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
23 8 0.27
24 13 0.43
25 9 0.30
ACGTcount: A:0.47, C:0.03, G:0.08, T:0.42
Consensus pattern (25 bp):
AAATAAATGAACTATTTTTTTGAAT
Found at i:7367248 original size:21 final size:22
Alignment explanation
Indices: 7367191--7367249 Score: 66
Period size: 23 Copynumber: 2.6 Consensus size: 22
7367181 GTTAGCCATA
* *
7367191 TTTTTCAAATAGATGAACTAAT
1 TTTTTTAAATAAATGAACTAAT
7367213 TTTTTTAATATTAAATGAACT-AT
1 TTTTTTAA-A-TAAATGAACTAAT
*
7367236 TTTTTTGAATAAAT
1 TTTTTTAAATAAAT
7367250 AAATGAAAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
21 5 0.16
22 8 0.25
23 10 0.31
24 9 0.28
ACGTcount: A:0.39, C:0.05, G:0.07, T:0.49
Consensus pattern (22 bp):
TTTTTTAAATAAATGAACTAAT
Found at i:7367839 original size:14 final size:14
Alignment explanation
Indices: 7367820--7367849 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
7367810 AACTAACTAG
7367820 ATCTCCTTCTTCCT
1 ATCTCCTTCTTCCT
7367834 ATCTCCTTCTTCCT
1 ATCTCCTTCTTCCT
7367848 AT
1 AT
7367850 AAAAGTAGAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.10, C:0.40, G:0.00, T:0.50
Consensus pattern (14 bp):
ATCTCCTTCTTCCT
Found at i:7374038 original size:28 final size:28
Alignment explanation
Indices: 7373993--7374049 Score: 69
Period size: 28 Copynumber: 2.0 Consensus size: 28
7373983 ACGAGATGGC
* * * * *
7373993 ATAAAAAATTTGTCTATTGAATTTATAT
1 ATAAAAAACTTATATATTAAATATATAT
7374021 ATAAAAAACTTATATATTAAATATATAT
1 ATAAAAAACTTATATATTAAATATATAT
7374049 A
1 A
7374050 AATACATAAT
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
28 24 1.00
ACGTcount: A:0.51, C:0.04, G:0.04, T:0.42
Consensus pattern (28 bp):
ATAAAAAACTTATATATTAAATATATAT
Found at i:7376812 original size:12 final size:12
Alignment explanation
Indices: 7376795--7376829 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
7376785 TGTAGTGAAA
*
7376795 TGCTTTTGCTTT
1 TGCTTTTGCATT
7376807 TGCTTTTGCATT
1 TGCTTTTGCATT
*
7376819 TGCATTTGCAT
1 TGCTTTTGCAT
7376830 CATACATTCT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.09, C:0.17, G:0.17, T:0.57
Consensus pattern (12 bp):
TGCTTTTGCATT
Found at i:7382231 original size:4 final size:4
Alignment explanation
Indices: 7382224--7382260 Score: 74
Period size: 4 Copynumber: 9.2 Consensus size: 4
7382214 ATAAATTCCT
7382224 TCCA TCCA TCCA TCCA TCCA TCCA TCCA TCCA TCCA T
1 TCCA TCCA TCCA TCCA TCCA TCCA TCCA TCCA TCCA T
7382261 AGATGCCAGG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 33 1.00
ACGTcount: A:0.24, C:0.49, G:0.00, T:0.27
Consensus pattern (4 bp):
TCCA
Found at i:7397243 original size:22 final size:23
Alignment explanation
Indices: 7397213--7397255 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
7397203 CTTTTTGCTG
*
7397213 TTATTTTTTTA-ATTAATTTTTT
1 TTATATTTTTATATTAATTTTTT
*
7397235 TTATATTTTTATATTTATTTT
1 TTATATTTTTATATTAATTTT
7397256 AAGATTAATT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 10 0.56
23 8 0.44
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (23 bp):
TTATATTTTTATATTAATTTTTT
Found at i:7397912 original size:35 final size:31
Alignment explanation
Indices: 7397845--7397906 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
7397835 TTGCTTTAAG
7397845 AAATTCCAACAGTTTTTTTTTTCATTCTTGT
1 AAATTCCAACAGTTTTTTTTTTCATTCTTGT
7397876 AAATTCCAACAGTTTTTTTTTTCATTCTTGT
1 AAATTCCAACAGTTTTTTTTTTCATTCTTGT
7397907 CTGTAAGGAG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.23, C:0.16, G:0.06, T:0.55
Consensus pattern (31 bp):
AAATTCCAACAGTTTTTTTTTTCATTCTTGT
Found at i:7399053 original size:8 final size:8
Alignment explanation
Indices: 7399042--7399080 Score: 51
Period size: 8 Copynumber: 4.8 Consensus size: 8
7399032 TATATATTAA
*
7399042 TTTATTTT
1 TTTAATTT
7399050 TTTAATTT
1 TTTAATTT
7399058 TTTAATTAT
1 TTTAATT-T
*
7399067 TTTAAATT
1 TTTAATTT
7399075 TTTAAT
1 TTTAAT
7399081 ATAACTATTT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
8 20 0.74
9 7 0.26
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (8 bp):
TTTAATTT
Found at i:7399160 original size:12 final size:12
Alignment explanation
Indices: 7399115--7399182 Score: 63
Period size: 12 Copynumber: 6.0 Consensus size: 12
7399105 AATTTGTGTG
* *
7399115 TTGTTTTAAAAA
1 TTGTTTTAATAT
*
7399127 TTGTTTTAGTA-
1 TTGTTTTAATAT
*
7399138 TTATTTT--TAT
1 TTGTTTTAATAT
7399148 TTGTTTTAATAT
1 TTGTTTTAATAT
7399160 TTGTTTTAATAT
1 TTGTTTTAATAT
*
7399172 TT-TTTAAATAT
1 TTGTTTTAATAT
7399183 ATTTGATTTA
Statistics
Matches: 48, Mismatches: 5, Indels: 7
0.80 0.08 0.12
Matches are distributed among these distances:
9 2 0.04
10 6 0.12
11 14 0.29
12 26 0.54
ACGTcount: A:0.28, C:0.00, G:0.07, T:0.65
Consensus pattern (12 bp):
TTGTTTTAATAT
Found at i:7399164 original size:33 final size:32
Alignment explanation
Indices: 7399115--7399176 Score: 88
Period size: 33 Copynumber: 1.9 Consensus size: 32
7399105 AATTTGTGTG
*
7399115 TTGTTTTAAAAATTGTTTTAGTATTATTTTTAT
1 TTGTTTTAAAAATTGTTTTAATATT-TTTTTAT
* *
7399148 TTGTTTTAATATTTGTTTTAATATTTTTT
1 TTGTTTTAAAAATTGTTTTAATATTTTTT
7399177 AAATATATTT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
32 4 0.15
33 22 0.85
ACGTcount: A:0.24, C:0.00, G:0.08, T:0.68
Consensus pattern (32 bp):
TTGTTTTAAAAATTGTTTTAATATTTTTTTAT
Found at i:7399192 original size:25 final size:25
Alignment explanation
Indices: 7399155--7399219 Score: 78
Period size: 25 Copynumber: 2.6 Consensus size: 25
7399145 TATTTGTTTT
*
7399155 AATATTTGTTTTAATAT-TTTTTAA
1 AATATTTGATTTAATATATTTTTAA
*
7399179 ATATATTTGATTTATTATATTTTTAA
1 A-ATATTTGATTTAATATATTTTTAA
* *
7399205 AATTTTTTATTTAAT
1 AATATTTGATTTAAT
7399220 GAAATAAGAA
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
24 1 0.03
25 25 0.74
26 8 0.24
ACGTcount: A:0.34, C:0.00, G:0.03, T:0.63
Consensus pattern (25 bp):
AATATTTGATTTAATATATTTTTAA
Found at i:7399207 original size:27 final size:25
Alignment explanation
Indices: 7399156--7399207 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 25
7399146 ATTTGTTTTA
*
7399156 ATATTTGTTTTAATATTTTTTAAAT
1 ATATTTGTTTTAATATTTTTAAAAT
*
7399181 ATATTTGATTTATTATATTTTTAAAAT
1 ATATTTG-TTT-TAATATTTTTAAAAT
7399208 TTTTTATTTA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
25 7 0.30
26 3 0.13
27 13 0.57
ACGTcount: A:0.35, C:0.00, G:0.04, T:0.62
Consensus pattern (25 bp):
ATATTTGTTTTAATATTTTTAAAAT
Found at i:7407254 original size:6 final size:7
Alignment explanation
Indices: 7407233--7407257 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
7407223 ATGTTTGCTT
7407233 AACCAAA
1 AACCAAA
7407240 AACCAAA
1 AACCAAA
7407247 AACCAAA
1 AACCAAA
7407254 AACC
1 AACC
7407258 TCACCTGCAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.68, C:0.32, G:0.00, T:0.00
Consensus pattern (7 bp):
AACCAAA
Found at i:7411005 original size:46 final size:46
Alignment explanation
Indices: 7410935--7411084 Score: 228
Period size: 46 Copynumber: 3.3 Consensus size: 46
7410925 TAGAATTTTA
* * * *
7410935 ATGGTTGAAAGATGCCATGGCAACATGACAGGAAATAAACAATACC
1 ATGGTTGAAAGATACCATGGCAACATGACAGGAAATGAATAAGACC
* * *
7410981 ATGGTTGAAAGATATCATGACAACATGACAGGAAATGAATAAGACA
1 ATGGTTGAAAGATACCATGGCAACATGACAGGAAATGAATAAGACC
7411027 ATGGTTGAAAGATACCATGGCAACATGACAGGAAATGAATAAGACC
1 ATGGTTGAAAGATACCATGGCAACATGACAGGAAATGAATAAGACC
*
7411073 ATAGTTGAAAGA
1 ATGGTTGAAAGA
7411085 CACTATGACA
Statistics
Matches: 93, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 93 1.00
ACGTcount: A:0.45, C:0.13, G:0.23, T:0.19
Consensus pattern (46 bp):
ATGGTTGAAAGATACCATGGCAACATGACAGGAAATGAATAAGACC
Found at i:7416405 original size:14 final size:14
Alignment explanation
Indices: 7416386--7416412 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
7416376 AACATTAAGA
7416386 ATATATATAATAAT
1 ATATATATAATAAT
7416400 ATATATATAATAA
1 ATATATATAATAA
7416413 ACTTATAAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (14 bp):
ATATATATAATAAT
Found at i:7419133 original size:791 final size:795
Alignment explanation
Indices: 7417016--7420119 Score: 3895
Period size: 791 Copynumber: 3.9 Consensus size: 795
7417006 GTTCCGACCA
* * * * * *
7417016 GGATTGGACCACGTAGTGATGGGAGGGGGTGCTCAAATTTTATGGTCATTGAAGAAGCGGAATAT
1 GGATTGGACCACGGAGTAATGGGAAGGGGCGCTCGAATTTTATGGTCACTGAAGAAGCGGAATAT
* ** *
7417081 TCCTCTAGGTTTTG-GGATAATGAAGGGTCCATGTGTTTAAAAGACCGACTAAG-AAAAACTCAA
66 TCCTCTAAGTTTTGAGG-TAATGAAGGGTCCATGCCTTTAAAAGACCGACTGAGAAAAAACTCAA
* *
7417144 GTGCAAATTGAAGGTCCTAAAGTGATATCAAAATATTGAACGAAAGAAACAAAAAAAAAATCACA
130 GTGAAAATTGAAGGTCCTAAAGTGATAT-AAAATATTGAACGAAAG----AAAAAAAAAACCACA
* * *
7417209 ATGGTCCAAAATTGTGGTACAACACCCACAATTGTCCACTTTAGAATTGCCAATGCTTAAAAAAA
190 ATTGTCCACAATTGTGGTACAACACCCACAATTGTCCACTTTAGAATTGCCACTGCTT-AAAAAA
* * *
7417274 AACCCGACTGAAACTCTGGACCCATTTGACGGTTCACATTTGAAGTTGAAAACCAGAGCCCAAAT
254 AACCCGACTGAAACTCTAGACCCATGTGACGGTTCACATTTGAAGTTGAGAACCAGAGCCCAAAT
* * * *
7417339 ACTGACTAGCTCTAGAATTAGTTACCCTTGGTTTGGATCCTCCCATATAATCCGACTCGATAAAA
319 ACTGACTAGCTCTGGAATTAGTCACCCTTGGTTTGGACCCTCCCATATAATCCGACCCGATAAAA
* * * * *
7417404 TATACCCATTTGTTTTCCTTCGGCAACGATGTT--GTGTATAATCCTTTCAACCCGTTTATTCAT
384 TAGACCCATTTGCTTTCCTTCGGTAACGATGTTGCGTGTACAATCCTCTCAACCCGTTTATTCAT
* *
7417467 TATCTCATTCTCCCCCACTGCGATTCTCGCATTCAAAAAAGGCGTTGTACACTTTACCTTGGTGA
449 TATCTCATTCTCCCCCACTGCGATTCTCGCATTCAAAAACGGCGTCGTACACTTTACCTTGGTGA
* ** * * * * *
7417532 AGCTGATGCATTTTTTCTTAGTCGTAACTAAACAAGCTCTCATTTCGATATCTTCGCACTGCTCT
514 AGCCGACACATTTTTCCTTAGCCGCAACCAAACAAGCTCTCATTTCGATATCTTCGCACCGCTCT
* * * * * * * *
7417597 CTTTCCATGAAGTCCATTGGTTTCCAACCAATTC-GGGACTGCCACCAACCAAGTTTCCACTTGT
579 CTTTTCGTTAAGTCCATTGATTTCCAACCAA-TCAGGGACTACCACCAAACAGGTTTGCACTTGT
* * *
7417661 TGGAA-CAGTGATG-GTGAACCCAATTCGTGCACCTTCCTCGCATTGAAATATGATTTTTGATTT
643 TGGAAGCAGTGATGACT-CACCCAATTCGTGCACCTTCCTCGCATTGAAATATGATTTTTGATTC
* * * *
7417724 GCAGGATTTGTAAGCAGCGACCTAAGAAGTAAGGTTTTTGAAGGCAAGGATGTATGGATTGGATG
707 GCAGGATTTGTAAGCGGCGACCTAAGAAGGAAGGTTTTTGAAGGTAAGGATGTATGGACTGGATG
* *
7417789 ATGGGTTC-TCCGAAGTTT-TGTTCA
772 ATGGG-TCATCCGAAGTTTCAGTT-G
* * * ** *
7417813 GGATTGGACAACAGAGTAAT-AGAAGGGAGCGCTCGAATTTTATGGT-TGTCGAAGAAGCAGAAT
1 GGATTGGACCACGGAGTAATGGGAAGGG-GCGCTCGAATTTTATGGTCACT-GAAGAAGCGGAAT
* *
7417876 ATTCCTCTAAGTTTT-AGGGTAATGAAGGGTCTACGCCTTTAAAAGACCGACTGAGAAAAAACTC
64 ATTCCTCTAAGTTTTGA-GGTAATGAAGGGTCCATGCCTTTAAAAGACCGACTGAGAAAAAACTC
* *
7417940 AAGTGAAAATTGAAGGTCCTAGAGTGATACCAAAATATTGAACGAAAGAAAAAAAAAACCACAAT
128 AAGTGAAAATTGAAGGTCCTAAAGTGATA-TAAAATATTGAACGAAAGAAAAAAAAAACCACAAT
* *
7418005 TGTCCACAATTGTGGTACAACACCTACAATTGTCCACTTTAGAATTGCCACTACTTAAAAAAAAC
192 TGTCCACAATTGTGGTACAACACCCACAATTGTCCACTTTAGAATTGCCACTGCTTAAAAAAAAC
* * *
7418070 CCGACCGAAACTCTAGACCCATGTGACGGTTCACATTTGAAGTTGAGAACCAGAACCTAAATACT
257 CCGACTGAAACTCTAGACCCATGTGACGGTTCACATTTGAAGTTGAGAACCAGAGCCCAAATACT
* * *
7418135 GACTAGCTCTGGAATTAGTCACCCTTGGTTTGGACCCTCCCATATAATCGGACCCAATAAGATAG
322 GACTAGCTCTGGAATTAGTCACCCTTGGTTTGGACCCTCCCATATAATCCGACCCGATAAAATAG
* * * * * *
7418200 ACCTATTTGCTTTCCTCCTGTAATGATGTTGCGTGTGCCATCCTCTCAACCCGTTTATTCATTAT
387 ACCCATTTGCTTTCCTTCGGTAACGATGTTGCGTGTACAATCCTCTCAACCCGTTTATTCATTAT
* * * ** *
7418265 CTCTTTCTCCCCTACTG-GTATTCTTGCATTCAAAAATAGCGTCGTACACTTTACCTTGGAGAAG
452 CTCATTCTCCCCCACTGCG-ATTCTCGCATTCAAAAACGGCGTCGTACACTTTACCTTGGTGAAG
** * * * *
7418329 CCGACGTATTTTTCCCTAGCTGTAACCAAACAAGCTCCCATTTCGATATCTTCGCACCGCTCTCT
516 CCGACACATTTTTCCTTAGCCGCAACCAAACAAGCTCTCATTTCGATATCTTCGCACCGCTCTCT
* *
7418394 TTTCGTTAAGTCCATTGATTTCCAACCAATCAGGGACTACCACCAAACATGTTTGAACTTGTTGG
581 TTTCGTTAAGTCCATTGATTTCCAACCAATCAGGGACTACCACCAAACAGGTTTGCACTTGTTGG
* * * * *
7418459 AAGCAGTGATGACTCACCCAATTTGTGCGCCTTCATCGTATTGAAGTATGATTTTTGATTCGCAG
646 AAGCAGTGATGACTCACCCAATTCGTGCACCTTCCTCGCATTGAAATATGATTTTTGATTCGCAG
*
7418524 GATTTGTAAGCGGCGACCTAAGAAGGAAGGTTTTTGAAGGTAAGGATGTATGGACTGGATGATAG
711 GATTTGTAAGCGGCGACCTAAGAAGGAAGGTTTTTGAAGGTAAGGATGTATGGACTGGATGATGG
* *
7418589 GTCATTCAAAGTTTCAGTTG
776 GTCATCCGAAGTTTCAGTTG
* *
7418609 GGATTGGACTATGGAGTAATGGGAAGGGGCGCTCGAATTTTATGGTCACTGAAGAAGCGGAATAT
1 GGATTGGACCACGGAGTAATGGGAAGGGGCGCTCGAATTTTATGGTCACTGAAGAAGCGGAATAT
* *
7418674 T-CTTTCAAGTTTTGAGGTAATGAAGGGTCCATACCTTTAAAAGACCGACTGA-AAAAAACTCAA
66 TCCTCT-AAGTTTTGAGGTAATGAAGGGTCCATGCCTTTAAAAGACCGACTGAGAAAAAACTCAA
* * *
7418737 GTGAAAATTGAAGGTTCTAGAGTGAT-TAAAATATTGAACGAAAG-AAAAAAAAACTACAATTGT
130 GTGAAAATTGAAGGTCCTAAAGTGATATAAAATATTGAACGAAAGAAAAAAAAAACCACAATTGT
* * * * *
7418800 CCACAATTGTGGTACAACACCCATAATTTTCCATTTTAAAATTGCCACTGCTTAAAAAAAA-TCG
195 CCACAATTGTGGTACAACACCCACAATTGTCCACTTTAGAATTGCCACTGCTTAAAAAAAACCCG
* * * *
7418864 ACTAAAACTTTAGACCCACGTGACGGTTCACATTTGAAGTTGAGAACCGGAGCCCAAATACTGAC
260 ACTGAAACTCTAGACCCATGTGACGGTTCACATTTGAAGTTGAGAACCAGAGCCCAAATACTGAC
* * * *
7418929 TAGCTCTGGAATTAGTCACCCTTGGTTTGGACCCTCTCAAATAATCTGACCCGATAAGATAGACC
325 TAGCTCTGGAATTAGTCACCCTTGGTTTGGACCCTCCCATATAATCCGACCCGATAAAATAGACC
* * * * * *
7418994 CATTTGCTTTTCTACGGTAACGATGTTGCGTGTACCATCTTTTCAACACGTTTATTCATTATCT-
390 CATTTGCTTTCCTTCGGTAACGATGTTGCGTGTACAATCCTCTCAACCCGTTTATTCATTATCTC
** * * * *
7419058 ACTTCTCCCCCACTATGATTCTCGCATTCAGAAACGGTGTCATACACTTTACCTTGGTGAAGCCA
455 A-TTCTCCCCCACTGCGATTCTCGCATTCAAAAACGGCGTCGTACACTTTACCTTGGTGAAGCCG
* * * * * *
7419123 ACACATTTTTCATTAGCCACAACCAAACAAGCTTTCGTTTCGATA-CGTTCACACTGCTCTCTTT
519 ACACATTTTTCCTTAGCCGCAACCAAACAAGCTCTCATTTCGATATC-TTCGCACCGCTCTCTTT
* * * *
7419187 TCGTTAAGTCCATTGATTTCCAACCAATCAGGGACTGCCACTAAGCGGGTTTGCACTTGTTGGAA
583 TCGTTAAGTCCATTGATTTCCAACCAATCAGGGACTACCACCAAACAGGTTTGCACTTGTTGGAA
* * * * * * * *
7419252 GCAATAATGGCACACCCAATTCGTGCACATTCCTCGCATTGAAACATGATTTTTGTTTCACAGGA
648 GCAGTGATGACTCACCCAATTCGTGCACCTTCCTCGCATTGAAATATGATTTTTGATTCGCAGGA
* * *
7419317 TTTGTAAGCGGCGACCCAAAAAGGAA-GTTCTTTGAAGGTAAGGATGTATGGACCGGATGATGGG
713 TTTGTAAGCGGCGACCTAAGAAGGAAGGTT-TTTGAAGGTAAGGATGTATGGACTGGATGATGGG
* **
7419381 TCATCCGAAGTTCCAGCCG
777 TCATCCGAAGTTTCAGTTG
* * * *
7419400 GGATTAGACCACCGAGTAATGGGAATGGGCACTCGAATTTTATAGTTGTC-C--AAGAAGCGGAA
1 GGATTGGACCACGGAGTAATGGGAAGGGGCGCTCGAATTTTAT-G--GTCACTGAAGAAGCGGAA
* * ** * *
7419462 TATTCCTCTAGGTTTTGGGGTAATGAACAGTCCATGCCTTTAAAAGATCAACTGAGAAAAAACTC
63 TATTCCTCTAAGTTTTGAGGTAATGAAGGGTCCATGCCTTTAAAAGACCGACTGAGAAAAAACTC
* *
7419527 AAGTGAAAATTAAAGGTCCTAAAGTGATACTAAAATATTGAACGAAAG-AAAAAAAAACCAAAAT
128 AAGTGAAAATTGAAGGTCCTAAAGTGATA-TAAAATATTGAACGAAAGAAAAAAAAAACCACAAT
* * * * *
7419591 TGTCTACAATTGTGGTACAAGACCTACAATTGTCCACTTTAGAATTGCTACTGCTTAAAAAAAAA
192 TGTCCACAATTGTGGTACAACACCCACAATTGTCCACTTTAGAATTGCCACTGCTTAAAAAAAAC
* * * * * * *
7419656 CTGACTGAAACTCCAGACCCATGTGAAGGTTCACAATTAAAGTTGAGAACCGGAGCCCAAATATT
257 CCGACTGAAACTCTAGACCCATGTGACGGTTCACATTTGAAGTTGAGAACCAGAGCCCAAATACT
* * * * * ** *
7419721 GATTAGCTCTGGAATTAGTCACCATTGGTTTAGACCCTCCTATATAATCCAACTTGATAAAATAT
322 GACTAGCTCTGGAATTAGTCACCCTTGGTTTGGACCCTCCCATATAATCCGACCCGATAAAATAG
* ** * *
7419786 ACCTATTTGCTTTCCTTCGAAAACGATGCTGCGTGTATAATCCTCTCAACCCGTTTATTCATTAT
387 ACCCATTTGCTTTCCTTCGGTAACGATGTTGCGTGTACAATCCTCTCAACCCGTTTATTCATTAT
* ** * * * * **
7419851 CTCCTTCTCCCTTACTGCGATTTTTGCATTTAAAAACGGCGTTGTACACTTTACCTTGGCAAAGC
452 CTCATTCTCCCCCACTGCGATTCTCGCATTCAAAAACGGCGTCGTACACTTTACCTTGGTGAAGC
* * * *
7419916 CG--ACATTTTTCCTTAGCCGCAACCAAACAAGCTCTCGTTTCAATATATTCGCACCACTCTCTT
517 CGACACATTTTTCCTTAGCCGCAACCAAACAAGCTCTCATTTCGATATCTTCGCACCGCTCTCTT
* *
7419979 TTCGTTAAGTCTATTGATTTCCAACCAATCAGGGACTACCACCAAACGGGTTTGCACTTGTTGGA
582 TTCGTTAAGTCCATTGATTTCCAACCAATCAGGGACTACCACCAAACAGGTTTGCACTTGTTGGA
* * **
7420044 AGCAGTGATGACGCACCCAATTCGTGCACCTTCCTCGCATTGAAATATGATTTTTGATTTGCAAT
647 AGCAGTGATGACTCACCCAATTCGTGCACCTTCCTCGCATTGAAATATGATTTTTGATTCGCAGG
7420109 ATTTGTAAGCG
712 ATTTGTAAGCG
7420120 AAGAGGACCA
Statistics
Matches: 1992, Mismatches: 283, Indels: 68
0.85 0.12 0.03
Matches are distributed among these distances:
790 4 0.00
791 549 0.28
792 112 0.06
793 345 0.17
794 161 0.08
795 448 0.22
796 218 0.11
797 101 0.05
798 54 0.03
ACGTcount: A:0.31, C:0.21, G:0.19, T:0.29
Consensus pattern (795 bp):
GGATTGGACCACGGAGTAATGGGAAGGGGCGCTCGAATTTTATGGTCACTGAAGAAGCGGAATAT
TCCTCTAAGTTTTGAGGTAATGAAGGGTCCATGCCTTTAAAAGACCGACTGAGAAAAAACTCAAG
TGAAAATTGAAGGTCCTAAAGTGATATAAAATATTGAACGAAAGAAAAAAAAAACCACAATTGTC
CACAATTGTGGTACAACACCCACAATTGTCCACTTTAGAATTGCCACTGCTTAAAAAAAACCCGA
CTGAAACTCTAGACCCATGTGACGGTTCACATTTGAAGTTGAGAACCAGAGCCCAAATACTGACT
AGCTCTGGAATTAGTCACCCTTGGTTTGGACCCTCCCATATAATCCGACCCGATAAAATAGACCC
ATTTGCTTTCCTTCGGTAACGATGTTGCGTGTACAATCCTCTCAACCCGTTTATTCATTATCTCA
TTCTCCCCCACTGCGATTCTCGCATTCAAAAACGGCGTCGTACACTTTACCTTGGTGAAGCCGAC
ACATTTTTCCTTAGCCGCAACCAAACAAGCTCTCATTTCGATATCTTCGCACCGCTCTCTTTTCG
TTAAGTCCATTGATTTCCAACCAATCAGGGACTACCACCAAACAGGTTTGCACTTGTTGGAAGCA
GTGATGACTCACCCAATTCGTGCACCTTCCTCGCATTGAAATATGATTTTTGATTCGCAGGATTT
GTAAGCGGCGACCTAAGAAGGAAGGTTTTTGAAGGTAAGGATGTATGGACTGGATGATGGGTCAT
CCGAAGTTTCAGTTG
Found at i:7421438 original size:21 final size:21
Alignment explanation
Indices: 7421413--7421481 Score: 72
Period size: 21 Copynumber: 3.4 Consensus size: 21
7421403 TATAATGATT
7421413 ATTATTATGATTTTATATTAA
1 ATTATTATGATTTTATATTAA
*
7421434 ATTATTATAATTATTA-ATT-A
1 ATTATTATGATT-TTATATTAA
* * *
7421454 A-CATTATGGTTTTATATTAG
1 ATTATTATGATTTTATATTAA
7421474 ATTATTAT
1 ATTATTAT
7421482 TATTAGTATT
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
18 3 0.08
19 10 0.26
20 3 0.08
21 19 0.50
22 3 0.08
ACGTcount: A:0.38, C:0.01, G:0.06, T:0.55
Consensus pattern (21 bp):
ATTATTATGATTTTATATTAA
Found at i:7421837 original size:14 final size:14
Alignment explanation
Indices: 7421813--7421845 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
7421803 AAGAATTAAG
7421813 GAAACAAAGAAACA
1 GAAACAAAGAAACA
7421827 -AAACAAAAGAAACA
1 GAAAC-AAAGAAACA
7421841 GAAAC
1 GAAAC
7421846 GAAGCACGGA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
13 4 0.24
14 9 0.53
15 4 0.24
ACGTcount: A:0.73, C:0.15, G:0.12, T:0.00
Consensus pattern (14 bp):
GAAACAAAGAAACA
Found at i:7422920 original size:24 final size:24
Alignment explanation
Indices: 7422888--7422953 Score: 116
Period size: 24 Copynumber: 2.8 Consensus size: 24
7422878 GATTTAAAAT
7422888 ATTCTGGGTGTGTTTGGGTTGGAC
1 ATTCTGGGTGTGTTTGGGTTGGAC
7422912 ATTCTGGGTGTGTTTGGGTTGGAC
1 ATTCTGGGTGTGTTTGGGTTGGAC
*
7422936 AATCT-GGTGTGTTTGGGT
1 ATTCTGGGTGTGTTTGGGT
7422954 GGAAATCCGC
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
23 13 0.32
24 28 0.68
ACGTcount: A:0.09, C:0.08, G:0.41, T:0.42
Consensus pattern (24 bp):
ATTCTGGGTGTGTTTGGGTTGGAC
Found at i:7424788 original size:15 final size:15
Alignment explanation
Indices: 7424750--7424781 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
7424740 AAATTGAATT
7424750 TTCATCAATCCAAAC
1 TTCATCAATCCAAAC
*
7424765 TTCATCAATCCGAAC
1 TTCATCAATCCAAAC
7424780 TT
1 TT
7424782 GTTCAATGAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.34, C:0.31, G:0.03, T:0.31
Consensus pattern (15 bp):
TTCATCAATCCAAAC
Found at i:7428564 original size:95 final size:94
Alignment explanation
Indices: 7428356--7428545 Score: 263
Period size: 95 Copynumber: 2.0 Consensus size: 94
7428346 TCTCAGCCAT
* * * * ** * *
7428356 TCATTAAGATTACAAGTATTCTCTATCAACATTTATCAATTTGGCATGTTAATTAAGTTATAAAA
1 TCATTAATATTATAAATATTTTC-ATCAACATTTATCAATTTCACATATTAATTAAATTATAAAA
* *
7428421 TATATAACTATTTTCTCACTTGGTTTATAA
65 TATATAACTATTTTCTCACTTGGCTTAAAA
*
7428451 TCATTAATATTATAAATATCTTTCATCAACATTTATCAATTTCACATATTGATTAAATTATAAAA
1 TCATTAATATTATAAATAT-TTTCATCAACATTTATCAATTTCACATATTAATTAAATTATAAAA
7428516 TATATAACTATTTTCTCACTTGGCTTAAAA
65 TATATAACTATTTTCTCACTTGGCTTAAAA
7428546 CTAGTTGATG
Statistics
Matches: 83, Mismatches: 11, Indels: 2
0.86 0.11 0.02
Matches are distributed among these distances:
95 80 0.96
96 3 0.04
ACGTcount: A:0.38, C:0.13, G:0.06, T:0.43
Consensus pattern (94 bp):
TCATTAATATTATAAATATTTTCATCAACATTTATCAATTTCACATATTAATTAAATTATAAAAT
ATATAACTATTTTCTCACTTGGCTTAAAA
Found at i:7432165 original size:11 final size:11
Alignment explanation
Indices: 7432151--7432190 Score: 53
Period size: 11 Copynumber: 3.6 Consensus size: 11
7432141 TATTTTCTTC
7432151 CTATTTTGCTA
1 CTATTTTGCTA
7432162 CTATTTTGCTA
1 CTATTTTGCTA
* * *
7432173 TTATGTTGTTA
1 CTATTTTGCTA
7432184 CTATTTT
1 CTATTTT
7432191 ATTGTTATTG
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.17, C:0.12, G:0.10, T:0.60
Consensus pattern (11 bp):
CTATTTTGCTA
Found at i:7444965 original size:35 final size:36
Alignment explanation
Indices: 7444910--7444985 Score: 102
Period size: 35 Copynumber: 2.1 Consensus size: 36
7444900 GTTTAGGGTC
* *
7444910 TCAATAAAATTTTGATCTCATTTTTTAAGTTTTGA-
1 TCAATAAAATTTTGATCTCATTTTTAAAGATTTGAT
*
7444945 TCAATAAAATTGTTTA-CTCATTTTTAAAGATTTGAT
1 TCAATAAAATT-TTGATCTCATTTTTAAAGATTTGAT
7444981 TCAAT
1 TCAAT
7444986 CTGAAAAATA
Statistics
Matches: 36, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
35 28 0.78
36 8 0.22
ACGTcount: A:0.34, C:0.09, G:0.08, T:0.49
Consensus pattern (36 bp):
TCAATAAAATTTTGATCTCATTTTTAAAGATTTGAT
Found at i:7448002 original size:30 final size:30
Alignment explanation
Indices: 7447966--7448025 Score: 120
Period size: 30 Copynumber: 2.0 Consensus size: 30
7447956 AAAGCAGCGT
7447966 CTGTGCACCACCATGTCGGCCAAGGACTGC
1 CTGTGCACCACCATGTCGGCCAAGGACTGC
7447996 CTGTGCACCACCATGTCGGCCAAGGACTGC
1 CTGTGCACCACCATGTCGGCCAAGGACTGC
7448026 GGCCACCACG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.20, C:0.37, G:0.27, T:0.17
Consensus pattern (30 bp):
CTGTGCACCACCATGTCGGCCAAGGACTGC
Found at i:7456257 original size:14 final size:16
Alignment explanation
Indices: 7456229--7456265 Score: 51
Period size: 15 Copynumber: 2.4 Consensus size: 16
7456219 GAGAGTGGAA
7456229 AAAAAAAAGAAAACT-
1 AAAAAAAAGAAAACTG
*
7456244 AAAAAAAAG-GAACTG
1 AAAAAAAAGAAAACTG
7456259 AAAAAAA
1 AAAAAAA
7456266 TTGAAAGAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
14 4 0.20
15 16 0.80
ACGTcount: A:0.78, C:0.05, G:0.11, T:0.05
Consensus pattern (16 bp):
AAAAAAAAGAAAACTG
Found at i:7460047 original size:18 final size:20
Alignment explanation
Indices: 7460005--7460041 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
7459995 ATATTTTATG
*
7460005 ATTA-TTTAATTAGATATAT
1 ATTATTTTAATAAGATATAT
7460024 ATTATTTTAATAAGATAT
1 ATTATTTTAATAAGATAT
7460042 TTTATTATTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
19 4 0.25
20 12 0.75
ACGTcount: A:0.43, C:0.00, G:0.05, T:0.51
Consensus pattern (20 bp):
ATTATTTTAATAAGATATAT
Found at i:7462251 original size:46 final size:46
Alignment explanation
Indices: 7462199--7462519 Score: 417
Period size: 46 Copynumber: 7.0 Consensus size: 46
7462189 AGTGTGCTCT
7462199 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *
7462245 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGTAGC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *
7462291 CTGATATGAAACGTGTAAGACCATGGTTGAAAGATACCATGGCAGC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
7462337 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *** *** *
7462383 ATGACGGGAAATAAATAAGACCATGGTTGAAAGATACCATGGCAGC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * **
7462429 GTGACATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * ** * * * *
7462475 ATGACAAAAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 CTGA-TATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
7462520 TCATGTCAAA
Statistics
Matches: 247, Mismatches: 27, Indels: 1
0.90 0.10 0.00
Matches are distributed among these distances:
46 214 0.87
47 33 0.13
ACGTcount: A:0.39, C:0.15, G:0.24, T:0.21
Consensus pattern (46 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:7465206 original size:20 final size:20
Alignment explanation
Indices: 7465177--7465221 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
7465167 ATATTTTATG
*
7465177 ATTA-TTTAATTAGATATAT
1 ATTATTTTAATGAGATATAT
*
7465196 ATTATTTTAATGAGATATTT
1 ATTATTTTAATGAGATATAT
7465216 ATTATT
1 ATTATT
7465222 ATTTTATTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 4 0.17
20 19 0.83
ACGTcount: A:0.38, C:0.00, G:0.07, T:0.56
Consensus pattern (20 bp):
ATTATTTTAATGAGATATAT
Found at i:7467427 original size:46 final size:46
Alignment explanation
Indices: 7467375--7467695 Score: 426
Period size: 46 Copynumber: 7.0 Consensus size: 46
7467365 AGTGTGCTCT
7467375 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
7467421 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *
7467467 CTGATATGAAACGTGTAAGACCATGGTTGAAAGATACCATGGCAGC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
7467513 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *** *** *
7467559 ATGACGGGAAATAAATAAGACCATGGTTGAAAGATACCATGGCAGC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * **
7467605 GTGACATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * ** * * * *
7467651 ATGACAAAAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 CTGA-TATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
7467696 TCATGTCAAA
Statistics
Matches: 249, Mismatches: 25, Indels: 1
0.91 0.09 0.00
Matches are distributed among these distances:
46 216 0.87
47 33 0.13
ACGTcount: A:0.39, C:0.15, G:0.24, T:0.21
Consensus pattern (46 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:7470216 original size:2 final size:2
Alignment explanation
Indices: 7470209--7470347 Score: 133
Period size: 2 Copynumber: 71.5 Consensus size: 2
7470199 AAAGAGATTT
* * *
7470209 GA GA GA GA GA GA GA GA GG GA GA GA GA AA GA -A GA -A GG GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
* * *
7470249 GA GA GA GG GA GA GA GA GA GA -A GA -A AA GA GA GA GA GA AA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
* * * * * * *
7470289 GA GA GG GG GA GG GA GA GA GA GG GA AA GG GA GA GA GA GA TA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
7470331 GA GA GA GA GA GA GA GA G
1 GA GA GA GA GA GA GA GA G
7470348 GGAGGGATGG
Statistics
Matches: 110, Mismatches: 23, Indels: 8
0.78 0.16 0.06
Matches are distributed among these distances:
1 4 0.04
2 106 0.96
ACGTcount: A:0.48, C:0.00, G:0.51, T:0.01
Consensus pattern (2 bp):
GA
Found at i:7470230 original size:12 final size:12
Alignment explanation
Indices: 7470209--7470533 Score: 149
Period size: 12 Copynumber: 28.0 Consensus size: 12
7470199 AAAGAGATTT
*
7470209 GAGAGAGAGAGA
1 GAGAGGGAGAGA
7470221 GAGAGGGAGAGA
1 GAGAGGGAGAGA
7470233 GA-A---AGA-A
1 GAGAGGGAGAGA
7470240 GA-AGGGAGAGA
1 GAGAGGGAGAGA
7470251 GAGAGGGAGAGA
1 GAGAGGGAGAGA
* *
7470263 GAGAGAAGAAAAGA
1 GAGAG--GGAGAGA
* *
7470277 GAGAGAGAAAGA
1 GAGAGGGAGAGA
7470289 GAGAGGG-G-GA
1 GAGAGGGAGAGA
* * *
7470299 GGGAGAGAGAGG
1 GAGAGGGAGAGA
*
7470311 GAAAGGGAGAGA
1 GAGAGGGAGAGA
*
7470323 GAGA--TAGAGA
1 GAGAGGGAGAGA
7470333 GAGA--GAGAGA
1 GAGAGGGAGAGA
*
7470343 GAGAGGGAGGGA
1 GAGAGGGAGAGA
7470355 TG-GAGGGAGAG-
1 -GAGAGGGAGAGA
7470366 GAAGAGGGAGAGA
1 G-AGAGGGAGAGA
* * *
7470379 G-GGGGGAAATGG
1 GAGAGGGAGA-GA
*
7470391 GGGAGGGAGAGA
1 GAGAGGGAGAGA
7470403 GAGAGAAGG-G-GA
1 GAGAG--GGAGAGA
7470415 GATG-GGGTA-AGGA
1 GA-GAGGG-AGA-GA
*
7470428 GGGAGGGAGAGA
1 GAGAGGGAGAGA
*
7470440 -AGGAGGGAGGGA
1 GA-GAGGGAGAGA
* *
7470452 GGGAGGGAAGGAGG
1 GAGAGGG-A-GAGA
*
7470466 GAGAGAGAGAGA
1 GAGAGGGAGAGA
7470478 GAGAGGGAGAGA
1 GAGAGGGAGAGA
*
7470490 GAGA--GAGGGA
1 GAGAGGGAGAGA
*
7470500 GATAGGGAGA-A
1 GAGAGGGAGAGA
*
7470511 -AGAGGGAGATA
1 GAGAGGGAGAGA
*
7470522 GGGAGGGAGAGA
1 GAGAGGGAGAGA
7470534 TATGAGTTGA
Statistics
Matches: 237, Mismatches: 42, Indels: 68
0.68 0.12 0.20
Matches are distributed among these distances:
7 4 0.02
8 3 0.01
10 47 0.20
11 13 0.05
12 132 0.56
13 19 0.08
14 19 0.08
ACGTcount: A:0.42, C:0.00, G:0.56, T:0.02
Consensus pattern (12 bp):
GAGAGGGAGAGA
Found at i:7470232 original size:16 final size:16
Alignment explanation
Indices: 7470211--7470501 Score: 167
Period size: 16 Copynumber: 18.2 Consensus size: 16
7470201 AGAGATTTGA
7470211 GAGAGAGAGAGAGAGG
1 GAGAGAGAGAGAGAGG
*
7470227 GAGAGAGA-A-AGAAG
1 GAGAGAGAGAGAGAGG
* *
7470241 AAGGGAGAGAGAGAGG
1 GAGAGAGAGAGAGAGG
7470257 GAGAGAGAGAGA-A--
1 GAGAGAGAGAGAGAGG
* *
7470270 GA-AAAGAGAGAGAGA
1 GAGAGAGAGAGAGAGG
* * *
7470285 AAGAGAGAGGGGGAGG
1 GAGAGAGAGAGAGAGG
* *
7470301 GAGAGAGAGGGAAAGG
1 GAGAGAGAGAGAGAGG
* *
7470317 GAGAGAGAGATAGAGA
1 GAGAGAGAGAGAGAGG
7470333 GAGAGAGAGAGAGAGG
1 GAGAGAGAGAGAGAGG
* *
7470349 GAGGGATG-GAGGGAGAG
1 GAGAGA-GAGAGAGAG-G
*
7470366 GA-AGAGGGAGAGAGG
1 GAGAGAGAGAGAGAGG
* * * *
7470381 G-GGGAAATGGGGGAGG
1 GAGAGAGA-GAGAGAGG
7470397 GAGAGAGAGAGA-AGGG
1 GAGAGAGAGAGAGA-GG
* *
7470413 GAGATGGGGTAAGGAGGGAGG
1 GAGA--GAG--A-GAGAGAGG
*
7470434 GAGAGA-AGGAGGGAGG
1 GAGAGAGA-GAGAGAGG
* *
7470450 GAGGGAGGGA-AGGAGG
1 GAGAGAGAGAGA-GAGG
7470466 GAGAGAGAGAGAGAGAG
1 GAGAGAGAGAGAGAG-G
7470483 G-GAGAGAGAGAGAGG
1 GAGAGAGAGAGAGAGG
7470498 GAGA
1 GAGA
7470502 TAGGGAGAAA
Statistics
Matches: 209, Mismatches: 42, Indels: 48
0.70 0.14 0.16
Matches are distributed among these distances:
12 8 0.04
13 3 0.01
14 10 0.05
15 12 0.06
16 151 0.72
17 11 0.05
18 2 0.01
19 1 0.00
20 1 0.00
21 9 0.04
22 1 0.00
ACGTcount: A:0.42, C:0.00, G:0.57, T:0.02
Consensus pattern (16 bp):
GAGAGAGAGAGAGAGG
Found at i:7470379 original size:8 final size:8
Alignment explanation
Indices: 7470211--7470526 Score: 148
Period size: 8 Copynumber: 40.4 Consensus size: 8
7470201 AGAGATTTGA
*
7470211 GAGAGAGA
1 GAGAGAGG
7470219 GAGAGAGG
1 GAGAGAGG
*
7470227 GAGAGAGA
1 GAGAGAGG
* *
7470235 AAGAAGAAG
1 GAG-AGAGG
7470244 G-GAGA--
1 GAGAGAGG
7470249 GAGAGAGG
1 GAGAGAGG
7470257 GAGAGA--
1 GAGAGAGG
*
7470263 GAGAGAAG
1 GAGAGAGG
* * *
7470271 AAAAGAGA
1 GAGAGAGG
**
7470279 GAGAGAAA
1 GAGAGAGG
7470287 GAGAGAGG
1 GAGAGAGG
7470295 G-G-GAGG
1 GAGAGAGG
7470301 GAGAGAGAG
1 GAGAGAG-G
*
7470310 G-GAAAGG
1 GAGAGAGG
*
7470317 GAGAGAGA
1 GAGAGAGG
* *
7470325 GATAGAGA
1 GAGAGAGG
*
7470333 GAGAGAGA
1 GAGAGAGG
7470341 GAGAGAGG
1 GAGAGAGG
* *
7470349 GAGGGATG
1 GAGAGAGG
*
7470357 GAGGGAGAG
1 GAGAGAG-G
7470366 GA-AGAGG
1 GAGAGAGG
7470373 GAGAGAGGG
1 GAGAGA-GG
* *
7470382 GGGAAATGG
1 GAGAGA-GG
7470391 G-G-GAGG
1 GAGAGAGG
*
7470397 GAGAGAGA
1 GAGAGAGG
7470405 GAGA-AGG
1 GAGAGAGG
7470412 G-GAGATGG
1 GAGAGA-GG
7470420 G-GTA-A-G
1 GAG-AGAGG
*
7470426 GAGGGAGG
1 GAGAGAGG
*
7470434 GAGAGAAG
1 GAGAGAGG
*
7470442 GAGGGAGG
1 GAGAGAGG
*
7470450 GAGGGAGG
1 GAGAGAGG
7470458 GA-AGGAGG
1 GAGA-GAGG
7470466 GAGAGAGAG
1 GAGAGAG-G
7470475 AGAGAGAGG
1 -GAGAGAGG
7470484 GAGAGA--
1 GAGAGAGG
7470490 GAGAGAGG
1 GAGAGAGG
*
7470498 GAGATAGG
1 GAGAGAGG
7470506 GAGAAAGAGG
1 GAG--AGAGG
*
7470516 GAGATAGG
1 GAGAGAGG
7470524 GAG
1 GAG
7470527 GGAGAGATAT
Statistics
Matches: 239, Mismatches: 40, Indels: 58
0.71 0.12 0.17
Matches are distributed among these distances:
5 1 0.00
6 28 0.12
7 18 0.08
8 157 0.66
9 21 0.09
10 14 0.06
ACGTcount: A:0.41, C:0.00, G:0.56, T:0.02
Consensus pattern (8 bp):
GAGAGAGG
Found at i:7470434 original size:4 final size:4
Alignment explanation
Indices: 7470425--7470500 Score: 62
Period size: 4 Copynumber: 18.0 Consensus size: 4
7470415 GATGGGGTAA
* * *
7470425 GGAG GGAG GGAG AGAA GGAG GGAG GGAG GGAG GGAA GGAG GGAG AGAGAG
1 GGAG GGAG GGAG GGAG GGAG GGAG GGAG GGAG GGAG GGAG GGAG -G-GAG
* * *
7470475 AGAG AGAG GGAG AGAGAG AGAG GGAG
1 GGAG GGAG GGAG -G-GAG GGAG GGAG
7470501 ATAGGGAGAA
Statistics
Matches: 58, Mismatches: 10, Indels: 8
0.76 0.13 0.11
Matches are distributed among these distances:
4 50 0.86
5 2 0.03
6 6 0.10
ACGTcount: A:0.37, C:0.00, G:0.63, T:0.00
Consensus pattern (4 bp):
GGAG
Found at i:7470509 original size:14 final size:14
Alignment explanation
Indices: 7470213--7470501 Score: 169
Period size: 14 Copynumber: 21.3 Consensus size: 14
7470203 AGATTTGAGA
7470213 GAGAGAGAGAGAGG
1 GAGAGAGAGAGAGG
*
7470227 GAGAGAGAAAGAAGAAG
1 GAGAGAG--AG-AGAGG
7470244 G-GAGAGAGAGAGG
1 GAGAGAGAGAGAGG
*
7470257 GAGAGAGAGAGA-A
1 GAGAGAGAGAGAGG
* *
7470270 GA-AAAGAGAGAGA
1 GAGAGAGAGAGAGG
* *
7470283 GAAAGAGAGAGGGG
1 GAGAGAGAGAGAGG
*
7470297 GAGGGAGAGAGAGG
1 GAGAGAGAGAGAGG
* * *
7470311 GAAAGGGAGAGAGA
1 GAGAGAGAGAGAGG
* *
7470325 GATAGAGAGAGAGA
1 GAGAGAGAGAGAGG
*
7470339 GAGAGAGAGGGAGG
1 GAGAGAGAGAGAGG
*
7470353 GATG-GAGGGAGAGG
1 GA-GAGAGAGAGAGG
* *
7470367 AAGAGGGAGAGAGGG
1 GAGAGAGAGAGA-GG
* * * *
7470382 GGGAAATGGGGGAGG
1 GAGAGA-GAGAGAGG
7470397 GAGAGAGAGAGAAGG
1 GAGAGAGAGAG-AGG
*
7470412 G-GAGA-TG-G-GG
1 GAGAGAGAGAGAGG
* *
7470422 TA-AG-GAGGGAGG
1 GAGAGAGAGAGAGG
7470434 GAGAGA-AG-GAGG
1 GAGAGAGAGAGAGG
*
7470446 GAG-G-GAGGGAGG
1 GAGAGAGAGAGAGG
* *
7470458 GA-AG-GAGGGAGA
1 GAGAGAGAGAGAGG
7470470 GAGAGAGAGAGAGG
1 GAGAGAGAGAGAGG
7470484 GAGAGAGAGAGAGG
1 GAGAGAGAGAGAGG
7470498 GAGA
1 GAGA
7470502 TAGGGAGAAA
Statistics
Matches: 212, Mismatches: 41, Indels: 44
0.71 0.14 0.15
Matches are distributed among these distances:
10 5 0.02
11 4 0.02
12 35 0.17
13 18 0.08
14 119 0.56
15 15 0.07
16 11 0.05
17 5 0.02
ACGTcount: A:0.42, C:0.00, G:0.57, T:0.02
Consensus pattern (14 bp):
GAGAGAGAGAGAGG
Found at i:7470734 original size:2 final size:2
Alignment explanation
Indices: 7470729--7470877 Score: 103
Period size: 2 Copynumber: 77.0 Consensus size: 2
7470719 ACAGATGGGG
* * * *
7470729 GA GA GA GA GT GA GA GA GG GA GA G- GA G- GA AA GA GA GA GG GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
* * * * * *
7470769 TA GA GA GG GA GA GA GT GA GA GG GA GA GG GA GA GA GA GA GA GG
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
* * * *
7470811 GA GA AA TG- GG GA GA GA GA G- GA -A GA GA GA G- GA GA GA GG GG
1 GA GA GA -GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
* *
7470850 GA GA GG GA GA GA GA GA GG GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA
7470878 TGAGTTGAGA
Statistics
Matches: 111, Mismatches: 29, Indels: 14
0.72 0.19 0.09
Matches are distributed among these distances:
1 6 0.05
2 105 0.95
ACGTcount: A:0.41, C:0.00, G:0.56, T:0.03
Consensus pattern (2 bp):
GA
Found at i:7470873 original size:20 final size:20
Alignment explanation
Indices: 7470713--7470874 Score: 138
Period size: 20 Copynumber: 8.0 Consensus size: 20
7470703 GGGGTTAAGT
* *
7470713 GGAGAGACAGATGGGGGAGAG
1 GGAGAGAGAGA-GGGAGAGAG
* *
7470734 AGAGTGAGAGAGGGAGAG-G
1 GGAGAGAGAGAGGGAGAGAG
*
7470753 AGGAAAGAGAGAGGGATAGAGAG
1 -GGAGAGAGAGAGGG--AGAGAG
7470776 GGAGAGAGTGAGAGGGAGAG-G
1 GGAGAGA--GAGAGGGAGAGAG
*
7470797 GAGAGAGAGAGAGGGAGAAATG
1 G-GAGAGAGAGAGGGAGAGA-G
7470819 GG-GAGAGAGA-GGA-AGAG
1 GGAGAGAGAGAGGGAGAGAG
* *
7470836 AGAG-GAGAGAGGGGGAGAG
1 GGAGAGAGAGAGGGAGAGAG
7470855 GGAGAGAGAGAGGGAGAGAG
1 GGAGAGAGAGAGGGAGAGAG
7470875 AGATGAGTTG
Statistics
Matches: 114, Mismatches: 14, Indels: 27
0.74 0.09 0.17
Matches are distributed among these distances:
17 8 0.07
18 5 0.04
19 11 0.10
20 49 0.43
21 11 0.10
22 22 0.19
23 1 0.01
24 7 0.06
ACGTcount: A:0.40, C:0.01, G:0.57, T:0.03
Consensus pattern (20 bp):
GGAGAGAGAGAGGGAGAGAG
Found at i:7470957 original size:2 final size:2
Alignment explanation
Indices: 7470945--7471010 Score: 69
Period size: 2 Copynumber: 33.0 Consensus size: 2
7470935 GGGTTAAGTG
* * * * * *
7470945 GA GA TA GA GA GA GA GG GG GA GA GA GA GA GG GA GA GG GA GA GG
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
*
7470987 GA GA GA GA GA GA AA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA
7471011 TATGAGTTGA
Statistics
Matches: 52, Mismatches: 12, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
2 52 1.00
ACGTcount: A:0.44, C:0.00, G:0.55, T:0.02
Consensus pattern (2 bp):
GA
Found at i:7470968 original size:12 final size:12
Alignment explanation
Indices: 7470951--7471009 Score: 82
Period size: 12 Copynumber: 4.9 Consensus size: 12
7470941 AGTGGAGATA
*
7470951 GAGAGAGAGGGG
1 GAGAGAGAGAGG
7470963 GAGAGAGAGAGG
1 GAGAGAGAGAGG
*
7470975 GAGAGGGAGAGG
1 GAGAGAGAGAGG
*
7470987 GAGAGAGAGAGA
1 GAGAGAGAGAGG
*
7470999 AAGAGAGAGAG
1 GAGAGAGAGAG
7471010 ATATGAGTTG
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 42 1.00
ACGTcount: A:0.42, C:0.00, G:0.58, T:0.00
Consensus pattern (12 bp):
GAGAGAGAGAGG
Found at i:7473115 original size:5 final size:5
Alignment explanation
Indices: 7473101--7473151 Score: 93
Period size: 5 Copynumber: 10.2 Consensus size: 5
7473091 ATTGGAGGGA
*
7473101 GAGAT GAGAT CAGAT GAGAT GAGAT GAGAT GAGAT GAGAT GAGAT GAGAT
1 GAGAT GAGAT GAGAT GAGAT GAGAT GAGAT GAGAT GAGAT GAGAT GAGAT
7473151 G
1 G
7473152 GCTTTTAATA
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
5 44 1.00
ACGTcount: A:0.39, C:0.02, G:0.39, T:0.20
Consensus pattern (5 bp):
GAGAT
Found at i:7475740 original size:36 final size:36
Alignment explanation
Indices: 7475668--7475816 Score: 217
Period size: 36 Copynumber: 4.1 Consensus size: 36
7475658 GCTCAGGATG
* * * **
7475668 CTTATGAGAGGAAAATGAAATGTAAAACAGCATATCA
1 CTTATAAGAGGAAAATGAGAT-TTAAACAGTTTATCA
7475705 CTTATAAGAGGAAAATGAGATTTAAACAGTTTATCA
1 CTTATAAGAGGAAAATGAGATTTAAACAGTTTATCA
*
7475741 CTTATATGAGGAAAATGAGATTTAAACAGTTTATCA
1 CTTATAAGAGGAAAATGAGATTTAAACAGTTTATCA
*
7475777 CTTACAAGAGGAAAATGAGATTTAAAACAGTTTATCA
1 CTTATAAGAGGAAAATGAGATTT-AAACAGTTTATCA
7475814 CTT
1 CTT
7475817 CAGCAATTAT
Statistics
Matches: 103, Mismatches: 8, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
36 68 0.66
37 35 0.34
ACGTcount: A:0.44, C:0.10, G:0.17, T:0.29
Consensus pattern (36 bp):
CTTATAAGAGGAAAATGAGATTTAAACAGTTTATCA
Found at i:7520491 original size:30 final size:30
Alignment explanation
Indices: 7520457--7520515 Score: 118
Period size: 30 Copynumber: 2.0 Consensus size: 30
7520447 ATTATTATGT
7520457 CTATTTTCTAATGGAAGAAACAAAATAGGC
1 CTATTTTCTAATGGAAGAAACAAAATAGGC
7520487 CTATTTTCTAATGGAAGAAACAAAATAGG
1 CTATTTTCTAATGGAAGAAACAAAATAGG
7520516 TAAATGAGAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.44, C:0.12, G:0.17, T:0.27
Consensus pattern (30 bp):
CTATTTTCTAATGGAAGAAACAAAATAGGC
Found at i:7524381 original size:9 final size:10
Alignment explanation
Indices: 7524335--7524385 Score: 52
Period size: 9 Copynumber: 5.0 Consensus size: 10
7524325 CAAATTTTAA
7524335 ATATATTTTT
1 ATATATTTTT
7524345 ATA-ATTTTT
1 ATATATTTTT
*
7524354 TTGAGTATTTTCT
1 AT-A-TATTTT-T
7524367 ATATATTTTT
1 ATATATTTTT
7524377 A-ATATTTTT
1 ATATATTTTT
7524386 GCGATTTTAT
Statistics
Matches: 35, Mismatches: 2, Indels: 9
0.76 0.04 0.20
Matches are distributed among these distances:
9 15 0.43
10 6 0.17
11 6 0.17
12 6 0.17
13 2 0.06
ACGTcount: A:0.27, C:0.02, G:0.04, T:0.67
Consensus pattern (10 bp):
ATATATTTTT
Found at i:7524906 original size:15 final size:16
Alignment explanation
Indices: 7524886--7524918 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
7524876 TATATATTTT
7524886 TTATTTT-ATTTTTAA
1 TTATTTTAATTTTTAA
7524901 TTATTTTAAATTTTTAA
1 TTATTTT-AATTTTTAA
7524918 T
1 T
7524919 ATAAATATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 7 0.44
17 9 0.56
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (16 bp):
TTATTTTAATTTTTAA
Found at i:7524998 original size:21 final size:21
Alignment explanation
Indices: 7524968--7525031 Score: 53
Period size: 21 Copynumber: 3.1 Consensus size: 21
7524958 TTAAGAATTG
*
7524968 TTTTAGTATTATTTTTATTTA
1 TTTTAATATTATTTTTATTTA
* *
7524989 TTTTAATATTTGTTTTTATGT-
1 TTTTAATA-TTATTTTTATTTA
*
7525010 TTTTAA-A-TATATTTGATTTA
1 TTTTAATATTAT-TTTTATTTA
7525030 TT
1 TT
7525032 ATATTTTTTA
Statistics
Matches: 34, Mismatches: 6, Indels: 7
0.72 0.13 0.15
Matches are distributed among these distances:
18 2 0.06
19 6 0.18
20 3 0.09
21 13 0.38
22 10 0.29
ACGTcount: A:0.25, C:0.00, G:0.06, T:0.69
Consensus pattern (21 bp):
TTTTAATATTATTTTTATTTA
Found at i:7525033 original size:26 final size:25
Alignment explanation
Indices: 7524994--7525044 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 25
7524984 ATTTATTTTA
7524994 ATATTTGTTTTTAT-GTTTTTAAAT
1 ATATTTGTTTTTATAGTTTTTAAAT
*
7525018 ATATTTGATTTATTATATTTTTTAAAT
1 ATATTTG-TTT-TTATAGTTTTTAAAT
7525045 TTTTTATTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
24 7 0.30
25 3 0.13
26 4 0.17
27 9 0.39
ACGTcount: A:0.29, C:0.00, G:0.06, T:0.65
Consensus pattern (25 bp):
ATATTTGTTTTTATAGTTTTTAAAT
Found at i:7527365 original size:13 final size:13
Alignment explanation
Indices: 7527347--7527387 Score: 50
Period size: 13 Copynumber: 3.2 Consensus size: 13
7527337 ACTAGTAGTG
7527347 ACAATTTTATTGA
1 ACAATTTTATTGA
7527360 ACAATTTT-TATGA
1 ACAATTTTAT-TGA
7527373 GACAATTTTA-TGA
1 -ACAATTTTATTGA
7527386 AC
1 AC
7527388 CATAAAACAA
Statistics
Matches: 25, Mismatches: 0, Indels: 7
0.78 0.00 0.22
Matches are distributed among these distances:
12 3 0.12
13 14 0.56
14 8 0.32
ACGTcount: A:0.39, C:0.10, G:0.10, T:0.41
Consensus pattern (13 bp):
ACAATTTTATTGA
Found at i:7535008 original size:18 final size:19
Alignment explanation
Indices: 7534980--7535027 Score: 62
Period size: 18 Copynumber: 2.6 Consensus size: 19
7534970 TTGTTTTGGT
*
7534980 ATTTGAATTTGATAATTAA
1 ATTTGATTTTGATAATTAA
**
7534999 ATTT-ATTTTGATTTTTAA
1 ATTTGATTTTGATAATTAA
7535017 ATTTGATTTTG
1 ATTTGATTTTG
7535028 TCAAAATTTA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
18 15 0.60
19 10 0.40
ACGTcount: A:0.31, C:0.00, G:0.10, T:0.58
Consensus pattern (19 bp):
ATTTGATTTTGATAATTAA
Found at i:7546860 original size:5 final size:5
Alignment explanation
Indices: 7546850--7546879 Score: 60
Period size: 5 Copynumber: 6.0 Consensus size: 5
7546840 TCCACCCAGG
7546850 ATTGT ATTGT ATTGT ATTGT ATTGT ATTGT
1 ATTGT ATTGT ATTGT ATTGT ATTGT ATTGT
7546880 TGTTGGTTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 25 1.00
ACGTcount: A:0.20, C:0.00, G:0.20, T:0.60
Consensus pattern (5 bp):
ATTGT
Found at i:7554857 original size:14 final size:14
Alignment explanation
Indices: 7554819--7554872 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 14
7554809 TTGTTTTAAA
7554819 TTATATAAT-TAAT
1 TTATATAATATAAT
*
7554832 GATATATAAATATAAT
1 -TTATAT-AATATAAT
7554848 TTATATAATATGAAT
1 TTATATAATAT-AAT
7554863 TTATGATAAT
1 TTAT-ATAAT
7554873 TAAAATATAA
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
14 10 0.29
15 15 0.44
16 9 0.26
ACGTcount: A:0.48, C:0.00, G:0.06, T:0.46
Consensus pattern (14 bp):
TTATATAATATAAT
Found at i:7555349 original size:14 final size:15
Alignment explanation
Indices: 7555332--7555362 Score: 55
Period size: 14 Copynumber: 2.1 Consensus size: 15
7555322 AATATAAAAC
7555332 AAATAAATTAAA-TA
1 AAATAAATTAAAGTA
7555346 AAATAAATTAAAGTA
1 AAATAAATTAAAGTA
7555361 AA
1 AA
7555363 TAGAATAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 12 0.75
15 4 0.25
ACGTcount: A:0.71, C:0.00, G:0.03, T:0.26
Consensus pattern (15 bp):
AAATAAATTAAAGTA
Found at i:7555357 original size:19 final size:18
Alignment explanation
Indices: 7555319--7555371 Score: 61
Period size: 19 Copynumber: 2.8 Consensus size: 18
7555309 GAATTAAATT
*
7555319 ATTAATATAAAACAAATAA
1 ATTAA-ATAAAATAAATAA
7555338 ATTAAATAAAATAAATTAA
1 ATTAAATAAAATAAA-TAA
* *
7555357 AGTAAATAGAATAAA
1 ATTAAATAAAATAAA
7555372 ACGAAAGTAA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
18 9 0.30
19 21 0.70
ACGTcount: A:0.68, C:0.02, G:0.04, T:0.26
Consensus pattern (18 bp):
ATTAAATAAAATAAATAA
Found at i:7555903 original size:12 final size:12
Alignment explanation
Indices: 7555886--7555928 Score: 50
Period size: 12 Copynumber: 3.5 Consensus size: 12
7555876 TTGAGTAGAA
7555886 ATTTAATTAATT
1 ATTTAATTAATT
7555898 ATTTAAATTAATT
1 ATTT-AATTAATT
* * *
7555911 CTGTAATTAATA
1 ATTTAATTAATT
7555923 ATTTAA
1 ATTTAA
7555929 AATGTTATTA
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
12 15 0.60
13 10 0.40
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.51
Consensus pattern (12 bp):
ATTTAATTAATT
Found at i:7556311 original size:23 final size:23
Alignment explanation
Indices: 7556283--7556328 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
7556273 AATGGCATGC
7556283 CATTGGATTTGTGATGTGATGAG
1 CATTGGATTTGTGATGTGATGAG
7556306 CATTGGATTTGTGATGTGATGAG
1 CATTGGATTTGTGATGTGATGAG
7556329 GAGATTTGTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.22, C:0.04, G:0.35, T:0.39
Consensus pattern (23 bp):
CATTGGATTTGTGATGTGATGAG
Found at i:7556442 original size:27 final size:27
Alignment explanation
Indices: 7556404--7556469 Score: 98
Period size: 27 Copynumber: 2.4 Consensus size: 27
7556394 TTTAATGCCT
7556404 TATTGGTGTGTTTGGGAGGATATGA-TA
1 TATTGGTGTGTTTGGGAGGATAT-ATTA
*
7556431 TATTGGTGTGTTTGGGAGGCTATATTA
1 TATTGGTGTGTTTGGGAGGATATATTA
*
7556458 TACTGGTGTGTT
1 TATTGGTGTGTT
7556470 ATGGAAAATT
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
26 1 0.03
27 35 0.97
ACGTcount: A:0.18, C:0.03, G:0.35, T:0.44
Consensus pattern (27 bp):
TATTGGTGTGTTTGGGAGGATATATTA
Found at i:7559311 original size:52 final size:52
Alignment explanation
Indices: 7559240--7559587 Score: 468
Period size: 52 Copynumber: 6.9 Consensus size: 52
7559230 ATCAAGTGAC
* **
7559240 AAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTGG
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGG
* *
7559292 AAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGACAAGTGG
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGG
* *
7559344 AAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGAC------
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGG
* **
7559390 AAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTGG
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGG
* *
7559442 AAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGAC------
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGG
*
7559488 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGA
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGG
** *
7559540 AAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGACAA
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAA
7559588 AGTGATAAGT
Statistics
Matches: 264, Mismatches: 20, Indels: 24
0.86 0.06 0.08
Matches are distributed among these distances:
46 85 0.32
52 179 0.68
ACGTcount: A:0.35, C:0.14, G:0.22, T:0.29
Consensus pattern (52 bp):
AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGG
Found at i:7559362 original size:98 final size:98
Alignment explanation
Indices: 7559292--7559598 Score: 438
Period size: 98 Copynumber: 3.1 Consensus size: 98
7559282 TGACAAGTGG
* *
7559292 AAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGACAAGTGGAAAGTGATAAGTA
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGGAAAGTGATAAGTA
* * *
7559357 ATAGCTTCGGCTATACTTATCTGATCAAGTGAC
66 ATAGCTACGACTATACTGATCTGATCAAGTGAC
* **
7559390 AAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTGGAAAGTGATAAGTA
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGGAAAGTGATAAGTA
* * *
7559455 ATAGCTTCGGCTATACTTATCTGATCAAGTGAC
66 ATAGCTACGACTATACTGATCTGATCAAGTGAC
* *
7559488 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGAAAAGTGATAAGTG
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGGAAAGTGATAAGTA
* * *
7559553 ATAGCTTTA-G-CTACACTTATCTGATCAAGAGAC
66 ATAGC--TACGACTATACTGATCTGATCAAGTGAC
7559586 AAAGTGATAAGTG
1 AAAGTGATAAGTG
7559599 GCTACACTTA
Statistics
Matches: 194, Mismatches: 13, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
98 192 0.99
99 1 0.01
100 1 0.01
ACGTcount: A:0.35, C:0.14, G:0.22, T:0.29
Consensus pattern (98 bp):
AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGGAAAGTGATAAGTA
ATAGCTACGACTATACTGATCTGATCAAGTGAC
Found at i:7559446 original size:150 final size:144
Alignment explanation
Indices: 7559226--7559587 Score: 580
Period size: 150 Copynumber: 2.4 Consensus size: 144
7559216 TTTGAGTACT
7559226 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
7559291 GAAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGACAAGTGGAAAGTGATAAGT
66 GAAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGAC------AAAGTGATAAGT
*
7559356 AATAGCTTCGGCTATACTTA
125 AATAGCTTCGGCTACACTTA
7559376 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
*
7559441 GAAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGACAAAGTGATAAGTGATAGC
66 GAAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGACAAAGTGATAAGTAATAGC
7559506 TTCGGCTACACTTA
131 TTCGGCTACACTTA
* *
7559520 TCTGATCAAGTGACAAGTGAAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGA
1 TCTGATCAAGTGAC------AAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGA
7559585 CAA
60 CAA
7559588 AGTGATAAGT
Statistics
Matches: 202, Mismatches: 4, Indels: 12
0.93 0.02 0.06
Matches are distributed among these distances:
144 44 0.22
150 158 0.78
ACGTcount: A:0.35, C:0.15, G:0.22, T:0.29
Consensus pattern (144 bp):
TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
GAAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGACAAAGTGATAAGTAATAGC
TTCGGCTACACTTA
Found at i:7559606 original size:37 final size:37
Alignment explanation
Indices: 7559562--7559781 Score: 381
Period size: 37 Copynumber: 6.0 Consensus size: 37
7559552 GATAGCTTTA
*
7559562 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
7559599 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
*
7559636 GCTACACTTATCTGATCAAGAAACAAAGTGATAGGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
7559673 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
*
7559710 GCTACACTTATCTGATCAAGAAACAAAGTGATAGGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
**
7559747 GCTACACTTATCTGATC-AGGGAC-AAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
7559782 ATCATACGTA
Statistics
Matches: 176, Mismatches: 7, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
35 11 0.06
36 4 0.02
37 161 0.91
ACGTcount: A:0.38, C:0.16, G:0.21, T:0.25
Consensus pattern (37 bp):
GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
Found at i:7561160 original size:96 final size:98
Alignment explanation
Indices: 7561035--7561225 Score: 287
Period size: 96 Copynumber: 2.0 Consensus size: 98
7561025 ATGTGAACAT
* *
7561035 GTGATTATGTGATTCCGTGTAAGATCATAGCTGGGCTATGGCATCGGTAAGTGATATGTG-TGCG
1 GTGATTATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAAGTGATATGTGATACG
*
7561099 TGTAAGACCATAGCTGGGCTATGGCATCGGTAA
66 TGTAAGACCATAGCTGGACTATGGCATCGGTAA
* * * *
7561132 GTGA-TATGTGATTTCGTGTAAGACCATAGTTGGGCTATGGCATCGGTATGTGATTTGTGATTAC
1 GTGATTATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAAGTGATATGTGA-TAC
*
7561196 GTGTAAGACCATAGTTGGACTATGGCATCG
65 GTGTAAGACCATAGCTGGACTATGGCATCG
7561226 AGAAAACGAA
Statistics
Matches: 84, Mismatches: 8, Indels: 3
0.88 0.08 0.03
Matches are distributed among these distances:
96 50 0.60
97 4 0.05
98 30 0.36
ACGTcount: A:0.24, C:0.14, G:0.31, T:0.32
Consensus pattern (98 bp):
GTGATTATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAAGTGATATGTGATACG
TGTAAGACCATAGCTGGACTATGGCATCGGTAA
Found at i:7561169 original size:49 final size:49
Alignment explanation
Indices: 7561035--7561225 Score: 278
Period size: 49 Copynumber: 3.9 Consensus size: 49
7561025 ATGTGAACAT
* *
7561035 GTGATTATGTGATTCCGTGTAAGATCATAGCTGGGCTATGGCATCGGTAA
1 GTGA-TATGTGATTACGTGTAAGACCATAGCTGGGCTATGGCATCGGTAA
*
7561085 GTGATATGTG--TGCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAA
1 GTGATATGTGATTACGTGTAAGACCATAGCTGGGCTATGGCATCGGTAA
* * *
7561132 GTGATATGTGATTTCGTGTAAGACCATAGTTGGGCTATGGCATCGGTAT
1 GTGATATGTGATTACGTGTAAGACCATAGCTGGGCTATGGCATCGGTAA
* * *
7561181 GTGATTTGTGATTACGTGTAAGACCATAGTTGGACTATGGCATCG
1 GTGATATGTGATTACGTGTAAGACCATAGCTGGGCTATGGCATCG
7561226 AGAAAACGAA
Statistics
Matches: 131, Mismatches: 8, Indels: 5
0.91 0.06 0.03
Matches are distributed among these distances:
47 45 0.34
49 82 0.63
50 4 0.03
ACGTcount: A:0.24, C:0.14, G:0.31, T:0.32
Consensus pattern (49 bp):
GTGATATGTGATTACGTGTAAGACCATAGCTGGGCTATGGCATCGGTAA
Found at i:7564436 original size:52 final size:52
Alignment explanation
Indices: 7564365--7564712 Score: 459
Period size: 52 Copynumber: 6.9 Consensus size: 52
7564355 ATCAAGTGAC
* **
7564365 AAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTGG
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGG
* *
7564417 AAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGACAAGTGG
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGG
* *
7564469 AAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGAC------
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGG
* **
7564515 AAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTGG
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGG
* * *
7564567 AAAGTGATAAGTAATAGCTTCGGCTATACTTATCTAATCAAGTGAC------
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGG
*
7564613 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGA
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGG
** *
7564665 AAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGACAA
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAA
7564713 AGTGATAAGT
Statistics
Matches: 262, Mismatches: 22, Indels: 24
0.85 0.07 0.08
Matches are distributed among these distances:
46 84 0.32
52 178 0.68
ACGTcount: A:0.35, C:0.14, G:0.22, T:0.29
Consensus pattern (52 bp):
AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGG
Found at i:7564571 original size:150 final size:144
Alignment explanation
Indices: 7564351--7564712 Score: 571
Period size: 150 Copynumber: 2.4 Consensus size: 144
7564341 TTTGAGTACT
7564351 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
*
7564416 GAAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGACAAGTGGAAAGTGATAAGT
66 GAAAGTGATAAGTAATAGCTTCGGCTATACTTATCTAATCAAGTGAC------AAAGTGATAAGT
*
7564481 AATAGCTTCGGCTATACTTA
125 AATAGCTTCGGCTACACTTA
7564501 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
*
7564566 GAAAGTGATAAGTAATAGCTTCGGCTATACTTATCTAATCAAGTGACAAAGTGATAAGTGATAGC
66 GAAAGTGATAAGTAATAGCTTCGGCTATACTTATCTAATCAAGTGACAAAGTGATAAGTAATAGC
7564631 TTCGGCTACACTTA
131 TTCGGCTACACTTA
* *
7564645 TCTGATCAAGTGACAAGTGAAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGA
1 TCTGATCAAGTGAC------AAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGA
7564710 CAA
60 CAA
7564713 AGTGATAAGT
Statistics
Matches: 201, Mismatches: 5, Indels: 12
0.92 0.02 0.06
Matches are distributed among these distances:
144 44 0.22
150 157 0.78
ACGTcount: A:0.35, C:0.15, G:0.22, T:0.29
Consensus pattern (144 bp):
TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
GAAAGTGATAAGTAATAGCTTCGGCTATACTTATCTAATCAAGTGACAAAGTGATAAGTAATAGC
TTCGGCTACACTTA
Found at i:7564684 original size:98 final size:98
Alignment explanation
Indices: 7564357--7564723 Score: 509
Period size: 98 Copynumber: 3.7 Consensus size: 98
7564347 TACTTCTGAT
** *
7564357 CAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTGGAAAGT
1 CAAGTGA-AAAGTGATAAGTAATAGCTTCAGCTACACTTATCTGATCAAGTGAC------AAAGT
* *
7564422 GATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGA
59 GATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGA
* * *
7564462 CAAGTGGAAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGACAAAGTGATAAGT
1 CAAGTGAAAAGTGATAAGTAATAGCTTCAGCTACACTTATCTGATCAAGTGACAAAGTGATAAGT
* **
7564527 GGTAGCTTTAGCTACACTTATCTGATCAAGTGA
66 GATAGCTTCGGCTACACTTATCTGATCAAGTGA
* * * *
7564560 CAAGTGGAAAGTGATAAGTAATAGCTTCGGCTATACTTATCTAATCAAGTGACAAAGTGATAAGT
1 CAAGTGAAAAGTGATAAGTAATAGCTTCAGCTACACTTATCTGATCAAGTGACAAAGTGATAAGT
7564625 GATAGCTTCGGCTACACTTATCTGATCAAGTGA
66 GATAGCTTCGGCTACACTTATCTGATCAAGTGA
* * *
7564658 CAAGTGAAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGACAAAGTGATAAGT
1 CAAGTGAAAAGTGATAAGTAATAGCTTCAGCTACACTTATCTGATCAAGTGACAAAGTGATAAGT
7564723 G
66 G
7564724 GCTACACTTA
Statistics
Matches: 240, Mismatches: 22, Indels: 7
0.89 0.08 0.03
Matches are distributed among these distances:
98 193 0.80
104 41 0.17
105 6 0.03
ACGTcount: A:0.35, C:0.14, G:0.22, T:0.28
Consensus pattern (98 bp):
CAAGTGAAAAGTGATAAGTAATAGCTTCAGCTACACTTATCTGATCAAGTGACAAAGTGATAAGT
GATAGCTTCGGCTACACTTATCTGATCAAGTGA
Found at i:7564731 original size:37 final size:37
Alignment explanation
Indices: 7564687--7564906 Score: 381
Period size: 37 Copynumber: 6.0 Consensus size: 37
7564677 GATAGCTTTA
*
7564687 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
7564724 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
*
7564761 GCTACACTTATCTGATCAAGAAACAAAGTGATAGGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
7564798 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
*
7564835 GCTACACTTATCTGATCAAGAAACAAAGTGATAGGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
**
7564872 GCTACACTTATCTGATC-AGGGAC-AAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
7564907 ATCATACGTA
Statistics
Matches: 176, Mismatches: 7, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
35 11 0.06
36 4 0.02
37 161 0.91
ACGTcount: A:0.38, C:0.16, G:0.21, T:0.25
Consensus pattern (37 bp):
GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
Found at i:7587206 original size:12 final size:12
Alignment explanation
Indices: 7587189--7587213 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
7587179 TGATTTTTAG
7587189 AAAGAATCTACC
1 AAAGAATCTACC
7587201 AAAGAATCTACC
1 AAAGAATCTACC
7587213 A
1 A
7587214 CATCCATGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.52, C:0.24, G:0.08, T:0.16
Consensus pattern (12 bp):
AAAGAATCTACC
Found at i:7590170 original size:12 final size:13
Alignment explanation
Indices: 7590140--7590172 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
7590130 TTTTACTTTT
7590140 AATTAAAACTATA
1 AATTAAAACTATA
7590153 AATTAAAA-TATA
1 AATTAAAACTATA
*
7590165 ATTTAAAA
1 AATTAAAA
7590173 ATTATCAATT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 11 0.58
13 8 0.42
ACGTcount: A:0.64, C:0.03, G:0.00, T:0.33
Consensus pattern (13 bp):
AATTAAAACTATA
Found at i:7590255 original size:21 final size:19
Alignment explanation
Indices: 7590199--7590255 Score: 53
Period size: 21 Copynumber: 2.8 Consensus size: 19
7590189 TATTATTAAA
7590199 TATTTAATTAAAATAATTTT
1 TATTTAA-TAAAATAATTTT
*
7590219 TA-TTAAAAATATATAATCTTT
1 TATTTAATAA-A-ATAAT-TTT
7590240 TATTTAATAAAGATAA
1 TATTTAATAAA-ATAA
7590256 ATTCATAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 7
0.75 0.08 0.17
Matches are distributed among these distances:
18 2 0.07
19 5 0.17
20 7 0.23
21 10 0.33
22 6 0.20
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (19 bp):
TATTTAATAAAATAATTTT
Found at i:7599802 original size:6 final size:6
Alignment explanation
Indices: 7599796--7599840 Score: 65
Period size: 6 Copynumber: 7.7 Consensus size: 6
7599786 CAACTCTTCT
* *
7599796 TCCTCT TCCTCG TCCTCG TCCTCG TCCTCG TCCTCT TCCTC- TCCT
1 TCCTCG TCCTCG TCCTCG TCCTCG TCCTCG TCCTCG TCCTCG TCCT
7599841 TCTGGGTCAC
Statistics
Matches: 37, Mismatches: 2, Indels: 1
0.93 0.05 0.03
Matches are distributed among these distances:
5 4 0.11
6 33 0.89
ACGTcount: A:0.00, C:0.51, G:0.09, T:0.40
Consensus pattern (6 bp):
TCCTCG
Found at i:7604881 original size:19 final size:19
Alignment explanation
Indices: 7604857--7604909 Score: 61
Period size: 19 Copynumber: 2.8 Consensus size: 19
7604847 GATGTTGATT
*
7604857 TAAAAAATTTAAAAATGTA
1 TAAAAAATTTAAAAATATA
* *
7604876 TAAAAATTTTAAAATTATA
1 TAAAAAATTTAAAAATATA
* *
7604895 TGAAAAATTCAAAAA
1 TAAAAAATTTAAAAA
7604910 GCATATATTA
Statistics
Matches: 27, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
19 27 1.00
ACGTcount: A:0.62, C:0.02, G:0.04, T:0.32
Consensus pattern (19 bp):
TAAAAAATTTAAAAATATA
Found at i:7607008 original size:20 final size:21
Alignment explanation
Indices: 7606983--7607028 Score: 58
Period size: 22 Copynumber: 2.2 Consensus size: 21
7606973 AGAAATATAC
* *
7606983 TATACAT-AATATTCGAAATA
1 TATACATAAATAGTCAAAATA
7607003 TATACATGAAATAGTCAAAATA
1 TATACAT-AAATAGTCAAAATA
7607025 TATA
1 TATA
7607029 TACTACTTAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 7 0.32
22 15 0.68
ACGTcount: A:0.52, C:0.09, G:0.07, T:0.33
Consensus pattern (21 bp):
TATACATAAATAGTCAAAATA
Found at i:7607783 original size:24 final size:22
Alignment explanation
Indices: 7607723--7607784 Score: 54
Period size: 22 Copynumber: 2.7 Consensus size: 22
7607713 AACAATAGTA
7607723 ATAAAGATAAAAA-ATATATATAC
1 ATAAA-ATAAAAATA-ATATATAC
** *
7607746 ATAAAATAGTAATAATATATAT
1 ATAAAATAAAAATAATATATAC
7607768 ATAACTAATAAAAATAA
1 ATAA--AATAAAAATAA
7607785 AAATAAAGAA
Statistics
Matches: 31, Mismatches: 5, Indels: 5
0.76 0.12 0.12
Matches are distributed among these distances:
22 16 0.52
23 6 0.19
24 9 0.29
ACGTcount: A:0.65, C:0.03, G:0.03, T:0.29
Consensus pattern (22 bp):
ATAAAATAAAAATAATATATAC
Found at i:7608010 original size:27 final size:28
Alignment explanation
Indices: 7607976--7608032 Score: 89
Period size: 28 Copynumber: 2.1 Consensus size: 28
7607966 TAGATAGCTA
7607976 ATAATATT-AAAACATATACATAATAAT
1 ATAATATTAAAAACATATACATAATAAT
* *
7608003 ATAATATTAAAAACATATATATATTAAT
1 ATAATATTAAAAACATATACATAATAAT
7608031 AT
1 AT
7608033 GAAAAATGCA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
27 8 0.30
28 19 0.70
ACGTcount: A:0.58, C:0.05, G:0.00, T:0.37
Consensus pattern (28 bp):
ATAATATTAAAAACATATACATAATAAT
Found at i:7608183 original size:23 final size:22
Alignment explanation
Indices: 7608157--7608229 Score: 71
Period size: 23 Copynumber: 3.4 Consensus size: 22
7608147 AATATATACG
7608157 TAATATATATATAGTAGTAACTA
1 TAATATATATATAGTAGTAA-TA
* *
7608180 TAATAAATATATATTAGTAATA
1 TAATATATATATAGTAGTAATA
* * *
7608202 -AATATAAAAATAATAGT-A-A
1 TAATATATATATAGTAGTAATA
7608221 TAATATATA
1 TAATATATA
7608230 AAAAGAAAAT
Statistics
Matches: 42, Mismatches: 7, Indels: 5
0.78 0.13 0.09
Matches are distributed among these distances:
19 1 0.02
20 8 0.19
21 13 0.31
22 2 0.05
23 18 0.43
ACGTcount: A:0.56, C:0.01, G:0.05, T:0.37
Consensus pattern (22 bp):
TAATATATATATAGTAGTAATA
Found at i:7608232 original size:21 final size:22
Alignment explanation
Indices: 7608163--7608232 Score: 72
Period size: 21 Copynumber: 3.0 Consensus size: 22
7608153 TACGTAATAT
*
7608163 ATATATAGTAGTAACTATAATAAA
1 ATATATAGTAATAA-TAT-ATAAA
7608187 TATATATTAGTAATAA-ATATAAA
1 -ATATA-TAGTAATAATATATAAA
7608210 A-ATAATAGTAATAATATATAAA
1 ATAT-ATAGTAATAATATATAAA
7608232 A
1 A
7608233 AGAAAATAAA
Statistics
Matches: 41, Mismatches: 1, Indels: 9
0.80 0.02 0.18
Matches are distributed among these distances:
21 11 0.27
22 10 0.24
23 5 0.12
24 2 0.05
25 5 0.12
26 8 0.20
ACGTcount: A:0.59, C:0.01, G:0.06, T:0.34
Consensus pattern (22 bp):
ATATATAGTAATAATATATAAA
Found at i:7608856 original size:11 final size:11
Alignment explanation
Indices: 7608840--7608882 Score: 50
Period size: 11 Copynumber: 3.9 Consensus size: 11
7608830 AAAACTCTAA
*
7608840 TTTTTTTTCTT
1 TTTTTTTTATT
*
7608851 TTTTTTTTGTT
1 TTTTTTTTATT
*
7608862 TTCTTTTTATT
1 TTTTTTTTATT
*
7608873 TTCTTTTTAT
1 TTTTTTTTAT
7608883 ATTCTCGTAT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
11 29 1.00
ACGTcount: A:0.05, C:0.07, G:0.02, T:0.86
Consensus pattern (11 bp):
TTTTTTTTATT
Found at i:7608865 original size:16 final size:15
Alignment explanation
Indices: 7608839--7608879 Score: 55
Period size: 16 Copynumber: 2.6 Consensus size: 15
7608829 TAAAACTCTA
7608839 ATTTTTTTTCTTTTT
1 ATTTTTTTTCTTTTT
*
7608854 TTTTTGTTTTCTTTTT
1 ATTTT-TTTTCTTTTT
7608870 ATTTTCTTTT
1 ATTTT-TTTT
7608880 TATATTCTCG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
15 4 0.18
16 18 0.82
ACGTcount: A:0.05, C:0.07, G:0.02, T:0.85
Consensus pattern (15 bp):
ATTTTTTTTCTTTTT
Found at i:7610430 original size:87 final size:87
Alignment explanation
Indices: 7610310--7610613 Score: 463
Period size: 87 Copynumber: 3.4 Consensus size: 87
7610300 ATGTGGCCCA
7610310 AGGCTCAACTCA-CTTCTCGCAATATGAGTTGATTTGGAAAAGTAGAAATTAAAGACAGAAATTG
1 AGGCTCAACTCATC-TCTCGCAATATGAGTTGATTTGGAAAAGTAGAAATTAAAGACAGAAATTG
7610374 AAATTACCTCAGCGTGTGAACCG
65 AAATTACCTCAGCGTGTGAACCG
7610397 AGGCTCAACTCATCTCTCGCAATATGAGTTGATTTGGAAAAGTAGAAATTAAAGACAGAAATTGA
1 AGGCTCAACTCATCTCTCGCAATATGAGTTGATTTGGAAAAGTAGAAATTAAAGACAGAAATTGA
7610462 AATTACCTCAGCGTGTGAACCG
66 AATTACCTCAGCGTGTGAACCG
7610484 AGGCTCAAGTCACCTCAACTCACCTCTCGCAATATGAGTTGATTTGGAAAAGTAGAAATTAAAGA
1 AGGCTC-A---A-CTC-A-T---CTCTCGCAATATGAGTTGATTTGGAAAAGTAGAAATTAAAGA
7610549 CAGAAATTGAAATTACCTCAGCGTGT---CCTG
56 CAGAAATTGAAATTACCTCAGCGTGTGAACC-G
*
7610579 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
1 AGGCTCAACTCATCTCTCGCAATATGAGTTGATTT
7610614 CTGAGAACAG
Statistics
Matches: 204, Mismatches: 1, Indels: 26
0.88 0.00 0.11
Matches are distributed among these distances:
85 22 0.11
87 91 0.45
88 2 0.01
89 1 0.00
90 3 0.01
91 2 0.01
92 3 0.01
93 1 0.00
94 4 0.02
95 7 0.03
97 68 0.33
ACGTcount: A:0.35, C:0.19, G:0.20, T:0.26
Consensus pattern (87 bp):
AGGCTCAACTCATCTCTCGCAATATGAGTTGATTTGGAAAAGTAGAAATTAAAGACAGAAATTGA
AATTACCTCAGCGTGTGAACCG
Found at i:7610566 original size:97 final size:95
Alignment explanation
Indices: 7610400--7610594 Score: 338
Period size: 97 Copynumber: 2.0 Consensus size: 95
7610390 TGAACCGAGG
*
7610400 CTCAACTCATCTCTCGCAATATGAGTTGATTTGGAAAAGTAGAAATTAAAGACAGAAATTGAAAT
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTGGAAAAGTAGAAATTAAAGACAGAAATTGAAAT
*
7610465 TACCTCAGCGTGTGAACC-GAGGCTCAAGTCAC
66 TACCTCAGCGTGT---CCTGAGGCTCAACTCAC
7610497 CTCAACTCACCTCTCGCAATATGAGTTGATTTGGAAAAGTAGAAATTAAAGACAGAAATTGAAAT
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTGGAAAAGTAGAAATTAAAGACAGAAATTGAAAT
7610562 TACCTCAGCGTGTCCTGAGGCTCAACTCAC
66 TACCTCAGCGTGTCCTGAGGCTCAACTCAC
7610592 CTC
1 CTC
7610595 TCGCAATATG
Statistics
Matches: 95, Mismatches: 2, Indels: 4
0.94 0.02 0.04
Matches are distributed among these distances:
94 2 0.02
95 16 0.17
97 77 0.81
ACGTcount: A:0.35, C:0.22, G:0.18, T:0.25
Consensus pattern (95 bp):
CTCAACTCACCTCTCGCAATATGAGTTGATTTGGAAAAGTAGAAATTAAAGACAGAAATTGAAAT
TACCTCAGCGTGTCCTGAGGCTCAACTCAC
Found at i:7616686 original size:46 final size:46
Alignment explanation
Indices: 7616619--7616919 Score: 404
Period size: 46 Copynumber: 6.7 Consensus size: 46
7616609 TGGCAACCTG
*
7616619 TGTGTAAGAGCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
*
7616665 TGTGTAAGACTATGGTTGAAAGATACCATGGCAACC-----TG---
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
7616703 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
*
7616749 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAGA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
* *
7616795 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
* ** * *
7616841 AGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACA-GAAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATG-AAA
* * * *
7616887 TGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCA
7616920 TCACGTCAAA
Statistics
Matches: 230, Mismatches: 16, Indels: 18
0.87 0.06 0.07
Matches are distributed among these distances:
38 35 0.15
41 2 0.01
43 2 0.01
45 1 0.00
46 190 0.83
ACGTcount: A:0.38, C:0.15, G:0.25, T:0.22
Consensus pattern (46 bp):
TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
Found at i:7616705 original size:84 final size:84
Alignment explanation
Indices: 7616570--7616875 Score: 477
Period size: 84 Copynumber: 3.5 Consensus size: 84
7616560 AGTGTGCTCT
*
7616570 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGTGTGTAAGAGCATGGT
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGTGTGTAAGACCATGGT
7616635 TGAAAGATACCATGGCAAC
66 TGAAAGATACCATGGCAAC
*
7616654 CTGATATGAAATGTGTAAGACTATGGTTGAAAGATACCATGGCAACCTGTGTGTAAGACCATGGT
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGTGTGTAAGACCATGGT
7616719 TGAAAGATACCATGGCAAC
66 TGAAAGATACCATGGCAAC
7616738 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAGATGTGTAAG
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACC-----T--G-TGTGTAAG
7616803 ACCATGGTTGAAAGATACCATGGCAAC
58 ACCATGGTTGAAAGATACCATGGCAAC
* * * **
7616830 GTGACATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
7616876 ATGACAGAAA
Statistics
Matches: 206, Mismatches: 8, Indels: 8
0.93 0.04 0.04
Matches are distributed among these distances:
84 128 0.62
89 1 0.00
91 1 0.00
92 76 0.37
ACGTcount: A:0.36, C:0.15, G:0.25, T:0.23
Consensus pattern (84 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGTGTGTAAGACCATGGT
TGAAAGATACCATGGCAAC
Found at i:7617225 original size:23 final size:25
Alignment explanation
Indices: 7617180--7617226 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
7617170 AATAAATATA
*
7617180 CATAAAATATATGGAAATGATGAAG
1 CATAAAATATATGGAAATAATGAAG
*
7617205 CATAAAATAT-T-GATATAATGAA
1 CATAAAATATATGGAAATAATGAA
7617227 ATGAATGATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 9 0.45
24 1 0.05
25 10 0.50
ACGTcount: A:0.53, C:0.04, G:0.15, T:0.28
Consensus pattern (25 bp):
CATAAAATATATGGAAATAATGAAG
Found at i:7626398 original size:20 final size:21
Alignment explanation
Indices: 7626373--7626418 Score: 67
Period size: 22 Copynumber: 2.2 Consensus size: 21
7626363 AGAAATATAC
*
7626373 TATACAT-AATATTCAAAATA
1 TATACATAAATAGTCAAAATA
7626393 TATACATGAAATAGTCAAAATA
1 TATACAT-AAATAGTCAAAATA
7626415 TATA
1 TATA
7626419 TATACTACTT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 7 0.30
22 16 0.70
ACGTcount: A:0.54, C:0.09, G:0.04, T:0.33
Consensus pattern (21 bp):
TATACATAAATAGTCAAAATA
Found at i:7627169 original size:24 final size:22
Alignment explanation
Indices: 7627109--7627170 Score: 61
Period size: 22 Copynumber: 2.7 Consensus size: 22
7627099 AACAATAGTA
*
7627109 ATAAAGATAAAAAAAATATATAC
1 ATAAA-ATAAAAATAATATATAC
** *
7627132 ATAAAATAGTAATAATATATAT
1 ATAAAATAAAAATAATATATAC
7627154 ATAACTAATAAAAATAA
1 ATAA--AATAAAAATAA
7627171 AAATAAAAAA
Statistics
Matches: 31, Mismatches: 6, Indels: 3
0.77 0.15 0.08
Matches are distributed among these distances:
22 17 0.55
23 5 0.16
24 9 0.29
ACGTcount: A:0.66, C:0.03, G:0.03, T:0.27
Consensus pattern (22 bp):
ATAAAATAAAAATAATATATAC
Found at i:7627397 original size:27 final size:28
Alignment explanation
Indices: 7627363--7627419 Score: 89
Period size: 28 Copynumber: 2.1 Consensus size: 28
7627353 TAGATAGCTA
7627363 ATAATATT-AAAACATATACATAATAAT
1 ATAATATTAAAAACATATACATAATAAT
* *
7627390 ATAATATTAAAAACATATATATATTAAT
1 ATAATATTAAAAACATATACATAATAAT
7627418 AT
1 AT
7627420 GAAAAATGCA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
27 8 0.30
28 19 0.70
ACGTcount: A:0.58, C:0.05, G:0.00, T:0.37
Consensus pattern (28 bp):
ATAATATTAAAAACATATACATAATAAT
Found at i:7627570 original size:23 final size:22
Alignment explanation
Indices: 7627544--7627616 Score: 71
Period size: 23 Copynumber: 3.4 Consensus size: 22
7627534 AATATATACG
7627544 TAATATATATATAGTAGTAACTA
1 TAATATATATATAGTAGTAA-TA
* *
7627567 TAATAAATATATATTAGTAATA
1 TAATATATATATAGTAGTAATA
* * *
7627589 -AATATAAAAATAATAGT-A-A
1 TAATATATATATAGTAGTAATA
7627608 TAATATATA
1 TAATATATA
7627617 AAAAGAAAAT
Statistics
Matches: 42, Mismatches: 7, Indels: 5
0.78 0.13 0.09
Matches are distributed among these distances:
19 1 0.02
20 8 0.19
21 13 0.31
22 2 0.05
23 18 0.43
ACGTcount: A:0.56, C:0.01, G:0.05, T:0.37
Consensus pattern (22 bp):
TAATATATATATAGTAGTAATA
Found at i:7627619 original size:21 final size:22
Alignment explanation
Indices: 7627550--7627619 Score: 72
Period size: 21 Copynumber: 3.0 Consensus size: 22
7627540 TACGTAATAT
*
7627550 ATATATAGTAGTAACTATAATAAA
1 ATATATAGTAATAA-TAT-ATAAA
7627574 TATATATTAGTAATAA-ATATAAA
1 -ATATA-TAGTAATAATATATAAA
7627597 A-ATAATAGTAATAATATATAAA
1 ATAT-ATAGTAATAATATATAAA
7627619 A
1 A
7627620 AGAAAATAAA
Statistics
Matches: 41, Mismatches: 1, Indels: 9
0.80 0.02 0.18
Matches are distributed among these distances:
21 11 0.27
22 10 0.24
23 5 0.12
24 2 0.05
25 5 0.12
26 8 0.20
ACGTcount: A:0.59, C:0.01, G:0.06, T:0.34
Consensus pattern (22 bp):
ATATATAGTAATAATATATAAA
Found at i:7630760 original size:26 final size:26
Alignment explanation
Indices: 7630725--7630829 Score: 158
Period size: 26 Copynumber: 4.0 Consensus size: 26
7630715 AATGCCCATG
* *
7630725 ATGGAACATTTACCTAAGTTATTATC
1 ATGGAACATTTACCTAACTCATTATC
*
7630751 ATGGAACATTTACCTAACCCATTATC
1 ATGGAACATTTACCTAACTCATTATC
*
7630777 ATGGAATATTTACCTAA-TCCATTATC
1 ATGGAACATTTACCTAACT-CATTATC
7630803 ATGGAACATTTACCTAACTCATTATC
1 ATGGAACATTTACCTAACTCATTATC
7630829 A
1 A
7630830 ATTTGTACCA
Statistics
Matches: 71, Mismatches: 6, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
26 70 0.99
27 1 0.01
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (26 bp):
ATGGAACATTTACCTAACTCATTATC
Found at i:7634654 original size:21 final size:20
Alignment explanation
Indices: 7634626--7634665 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
7634616 CCCTTCCAAG
*
7634626 TGCCCCACGTCCATGGCCAT
1 TGCCCCACGACCATGGCCAT
*
7634646 TGCCACCACGACCTTGGCCA
1 TGCC-CCACGACCATGGCCA
7634666 CGACCTCTCG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.17, C:0.45, G:0.20, T:0.17
Consensus pattern (20 bp):
TGCCCCACGACCATGGCCAT
Found at i:7635715 original size:12 final size:12
Alignment explanation
Indices: 7635698--7635728 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
7635688 AGTACTACCT
*
7635698 CGGCCTCGACCA
1 CGGCCTCGACAA
7635710 CGGCCTCGACAA
1 CGGCCTCGACAA
7635722 CGGCCTC
1 CGGCCTC
7635729 TTCCCCGAGT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.16, C:0.48, G:0.26, T:0.10
Consensus pattern (12 bp):
CGGCCTCGACAA
Found at i:7638965 original size:26 final size:26
Alignment explanation
Indices: 7638936--7639040 Score: 183
Period size: 26 Copynumber: 4.0 Consensus size: 26
7638926 AATGCCCATG
*
7638936 ATGGAACATTTACCTAAGCCATTATC
1 ATGGAACATTTACCTAACCCATTATC
7638962 ATGGAACATTTACCTAACCCATTATC
1 ATGGAACATTTACCTAACCCATTATC
* *
7638988 ATGGAATATTTACCTAATCCATTATC
1 ATGGAACATTTACCTAACCCATTATC
7639014 ATGGAACATTTACCTAACCCATTATC
1 ATGGAACATTTACCTAACCCATTATC
7639040 A
1 A
7639041 ATTTGTACCA
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 74 1.00
ACGTcount: A:0.35, C:0.24, G:0.09, T:0.32
Consensus pattern (26 bp):
ATGGAACATTTACCTAACCCATTATC
Found at i:7639484 original size:15 final size:14
Alignment explanation
Indices: 7639460--7639506 Score: 60
Period size: 15 Copynumber: 3.4 Consensus size: 14
7639450 TAAAACTCTA
7639460 ATTTTTTTCTTTTT
1 ATTTTTTTCTTTTT
7639474 ATTTGTTTTCTTTTT
1 ATTT-TTTTCTTTTT
* *
7639489 ATTTTCTT-TTTAT
1 ATTTTTTTCTTTTT
7639502 ATTTT
1 ATTTT
7639507 CGTATATATA
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
13 9 0.30
14 7 0.23
15 14 0.47
ACGTcount: A:0.11, C:0.06, G:0.02, T:0.81
Consensus pattern (14 bp):
ATTTTTTTCTTTTT
Found at i:7646327 original size:18 final size:16
Alignment explanation
Indices: 7646282--7646332 Score: 59
Period size: 18 Copynumber: 3.1 Consensus size: 16
7646272 TTATGTATTT
7646282 TTAAAATT-TTAAAAA
1 TTAAAATTATTAAAAA
*
7646297 TTAAAAATCATTAAAATCA
1 TT-AAAATTATTAAAA--A
7646316 TTAAAATTATTAAAAA
1 TTAAAATTATTAAAAA
7646332 T
1 T
7646333 ATATTTTTTT
Statistics
Matches: 30, Mismatches: 2, Indels: 7
0.77 0.05 0.18
Matches are distributed among these distances:
15 2 0.07
16 7 0.23
17 6 0.20
18 12 0.40
19 3 0.10
ACGTcount: A:0.59, C:0.04, G:0.00, T:0.37
Consensus pattern (16 bp):
TTAAAATTATTAAAAA
Found at i:7646331 original size:10 final size:9
Alignment explanation
Indices: 7646300--7646330 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
7646290 TTAAAAATTA
7646300 AAAATCATT
1 AAAATCATT
7646309 AAAATCATT
1 AAAATCATT
*
7646318 AAAATTATT
1 AAAATCATT
7646327 AAAA
1 AAAA
7646331 ATATATTTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.61, C:0.06, G:0.00, T:0.32
Consensus pattern (9 bp):
AAAATCATT
Found at i:7658541 original size:13 final size:13
Alignment explanation
Indices: 7658522--7658554 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
7658512 TTTTGCATTT
7658522 TATGTGTGAGAAAA
1 TATGTGTGA-AAAA
7658536 -ATGTGTGAAAAA
1 TATGTGTGAAAAA
7658548 TATGTGT
1 TATGTGT
7658555 TTACTTAGCT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
12 4 0.22
13 14 0.78
ACGTcount: A:0.39, C:0.00, G:0.27, T:0.33
Consensus pattern (13 bp):
TATGTGTGAAAAA
Found at i:7665817 original size:15 final size:15
Alignment explanation
Indices: 7665792--7665829 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
7665782 AGACCATGGA
*
7665792 AGAAGAGGTGGA-GT
1 AGAAGAAGTGGAGGT
7665806 ATGAAGAAGTGGAGGT
1 A-GAAGAAGTGGAGGT
7665822 AGAAGAAG
1 AGAAGAAG
7665830 AAGGAGAGGA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
14 1 0.05
15 17 0.81
16 3 0.14
ACGTcount: A:0.42, C:0.00, G:0.45, T:0.13
Consensus pattern (15 bp):
AGAAGAAGTGGAGGT
Found at i:7665828 original size:3 final size:3
Alignment explanation
Indices: 7665822--7665902 Score: 92
Period size: 3 Copynumber: 27.0 Consensus size: 3
7665812 AAGTGGAGGT
* * * * *
7665822 AGA AGA AGA AGG AGA GGA AGA A-A TAGA AGA GGA AGT GGA AGA AGA
1 AGA AGA AGA AGA AGA AGA AGA AGA -AGA AGA AGA AGA AGA AGA AGA
*
7665867 AGA AGA AGA AGA AGA AGA AGA GGA AGA AGA AGA AGA
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA
7665903 CCTGGATGTT
Statistics
Matches: 64, Mismatches: 12, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
2 1 0.02
3 62 0.97
4 1 0.02
ACGTcount: A:0.59, C:0.00, G:0.38, T:0.02
Consensus pattern (3 bp):
AGA
Found at i:7670259 original size:21 final size:21
Alignment explanation
Indices: 7670233--7670281 Score: 73
Period size: 21 Copynumber: 2.3 Consensus size: 21
7670223 TTCTTCATTA
7670233 TCTTCTTCTTCG-TCTTGTTCT
1 TCTTCTTCTTCGAT-TTGTTCT
*
7670254 TGTTCTTCTTCGATTTGTTCT
1 TCTTCTTCTTCGATTTGTTCT
7670275 TCTTCTT
1 TCTTCTT
7670282 TATGATTATC
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
21 24 0.96
22 1 0.04
ACGTcount: A:0.02, C:0.24, G:0.10, T:0.63
Consensus pattern (21 bp):
TCTTCTTCTTCGATTTGTTCT
Found at i:7693362 original size:63 final size:63
Alignment explanation
Indices: 7693253--7693379 Score: 184
Period size: 63 Copynumber: 2.0 Consensus size: 63
7693243 AAGTATGGTG
* *
7693253 CTTTAGTGCCATATGGTATATCTATCTCAACCATTATAAACATGCCATACTTGGCACAATAGA
1 CTTTAGTGCCATATGGTATAGCTATCTCAACCATTATAAACATGCCATACTTGGCACAAAAGA
* * * *
7693316 CTTTGGTGCCATATGGTATAGCTATCTTC-ACCATTATCAGCCTGCCATACTTGGCACAAAAGA
1 CTTTAGTGCCATATGGTATAGCTATC-TCAACCATTATAAACATGCCATACTTGGCACAAAAGA
7693379 C
1 C
7693380 AGATACACAT
Statistics
Matches: 57, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
63 55 0.96
64 2 0.04
ACGTcount: A:0.30, C:0.24, G:0.15, T:0.31
Consensus pattern (63 bp):
CTTTAGTGCCATATGGTATAGCTATCTCAACCATTATAAACATGCCATACTTGGCACAAAAGA
Found at i:7696577 original size:22 final size:22
Alignment explanation
Indices: 7696552--7696594 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
7696542 TATCCAAACA
7696552 ATAACAACAAAATAGTAGCAAC
1 ATAACAACAAAATAGTAGCAAC
* **
7696574 ATAATAGTAAAATAGTAGCAA
1 ATAACAACAAAATAGTAGCAA
7696595 AATAGAGAGA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.58, C:0.12, G:0.12, T:0.19
Consensus pattern (22 bp):
ATAACAACAAAATAGTAGCAAC
Found at i:7696598 original size:11 final size:11
Alignment explanation
Indices: 7696559--7696599 Score: 55
Period size: 11 Copynumber: 3.7 Consensus size: 11
7696549 ACAATAACAA
7696559 CAAAATAGTAG
1 CAAAATAGTAG
* *
7696570 CAACATAATAG
1 CAAAATAGTAG
*
7696581 TAAAATAGTAG
1 CAAAATAGTAG
7696592 CAAAATAG
1 CAAAATAG
7696600 AGAGAAAATA
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.56, C:0.10, G:0.15, T:0.20
Consensus pattern (11 bp):
CAAAATAGTAG
Found at i:7696607 original size:22 final size:22
Alignment explanation
Indices: 7696560--7696609 Score: 66
Period size: 22 Copynumber: 2.3 Consensus size: 22
7696550 CAATAACAAC
* *
7696560 AAAATAGTAGCAACATAATAGT
1 AAAATAGTAGCAAAATAAGAGT
7696582 AAAATAGTAGCAAAATAGAGAG-
1 AAAATAGTAGCAAAATA-AGAGT
7696604 AAAATA
1 AAAATA
7696610 ATAAGAATTT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
22 22 0.88
23 3 0.12
ACGTcount: A:0.60, C:0.06, G:0.16, T:0.18
Consensus pattern (22 bp):
AAAATAGTAGCAAAATAAGAGT
Found at i:7701763 original size:46 final size:46
Alignment explanation
Indices: 7701699--7701967 Score: 340
Period size: 46 Copynumber: 5.6 Consensus size: 46
7701689 TTTGAGTACT
* * *
7701699 TCTGATCAAGTGATAAAGTGATAAGTTATAGCTTCGGCTATACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTCGGCTACACTTA
*
7701745 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTCAGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTCGGCTACACTTA
7701791 TCTGATCAAGTGACAAGTGGAAAGTGATAAGTGATAGCTTCGGCTACACTTA
1 TCTGATCAAGTGAC------AAAGTGATAAGTGATAGCTTCGGCTACACTTA
* *
7701843 TCTGATCAAGTGACAAGTGGAAAGTGATAAGTTATAGCTTCGGCTATACTTA
1 TCTGATCAAGTGAC------AAAGTGATAAGTGATAGCTTCGGCTACACTTA
**
7701895 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTCGGCTACACTTA
* *
7701941 TTTGATCAAGAGACAAAGTGATAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTG
7701968 GCTACACTTA
Statistics
Matches: 204, Mismatches: 13, Indels: 12
0.89 0.06 0.05
Matches are distributed among these distances:
46 109 0.53
52 95 0.47
ACGTcount: A:0.34, C:0.14, G:0.22, T:0.30
Consensus pattern (46 bp):
TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTCGGCTACACTTA
Found at i:7701824 original size:52 final size:52
Alignment explanation
Indices: 7701759--7701956 Score: 291
Period size: 52 Copynumber: 3.9 Consensus size: 52
7701749 ATCAAGTGAC
7701759 AAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTGG
1 AAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTGG
*
7701811 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGG
1 AAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTGG
* * *
7701863 AAAGTGATAAGTTATAGCTTCGGCTATACTTATCTGATCAAGTGAC------
1 AAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTGG
* * *
7701909 AAAGTGATAAGTGATAGCTTTAGCTACACTTATTTGATCAAGAGACAA
1 AAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAA
7701957 AGTGATAAGT
Statistics
Matches: 135, Mismatches: 9, Indels: 8
0.89 0.06 0.05
Matches are distributed among these distances:
46 40 0.30
52 95 0.70
ACGTcount: A:0.35, C:0.15, G:0.22, T:0.29
Consensus pattern (52 bp):
AAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTGG
Found at i:7701975 original size:37 final size:37
Alignment explanation
Indices: 7701931--7702077 Score: 242
Period size: 37 Copynumber: 4.0 Consensus size: 37
7701921 GATAGCTTTA
*
7701931 GCTACACTTATTTGATCAAGAGACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
*
7701968 GCTACACTTATTTGATCAAGAGACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
*
7702005 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
* *
7702042 GCTACACTTATCTGATCAAGGGA-TAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
7702078 ATCATACGTA
Statistics
Matches: 105, Mismatches: 5, Indels: 1
0.95 0.05 0.01
Matches are distributed among these distances:
36 12 0.11
37 93 0.89
ACGTcount: A:0.37, C:0.14, G:0.22, T:0.27
Consensus pattern (37 bp):
GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
Found at i:7704626 original size:18 final size:18
Alignment explanation
Indices: 7704603--7704873 Score: 169
Period size: 18 Copynumber: 14.6 Consensus size: 18
7704593 GAATAATTAT
7704603 TTATTCAGTAACAGTCAA
1 TTATTCAGTAACAGTCAA
* *
7704621 TTATTCGGTAACAATCAA
1 TTATTCAGTAACAGTCAA
* * ** *
7704639 TTATTCAATAATAACCAG
1 TTATTCAGTAACAGTCAA
*
7704657 TTATTCAGTATC-GATCAA
1 TTATTCAGTAACAG-TCAA
7704675 TTGATCGGTTATCCAGTAACAGTCAA
1 TT-A-----T-T-CAGTAACAGTCAA
*
7704701 TTATTCAGTAA-AATCAGA
1 TTATTCAGTAACAGTCA-A
*
7704719 -TATTCAGTAACTA-TTAA
1 TTATTCAGTAAC-AGTCAA
*
7704736 GTTATTCAGTAGCAGTC-A
1 -TTATTCAGTAACAGTCAA
* * *
7704754 TTCATTCAGTGACAATCAG
1 TT-ATTCAGTAACAGTCAA
*
7704773 TTATTCAGTAA-TGATCAA
1 TTATTCAGTAACAG-TCAA
* * *
7704791 TTATTCAGTAATATTCAG
1 TTATTCAGTAACAGTCAA
7704809 TTATTCAGTAACAGTCTAA
1 TTATTCAGTAACAGTC-AA
*
7704828 -TATCCAGTAACAGTCAA
1 TTATTCAGTAACAGTCAA
* *
7704845 TTATCCGGTAACAGTCAA
1 TTATTCAGTAACAGTCAA
7704863 TTATTCAGTAA
1 TTATTCAGTAA
7704874 TAATCAGTTA
Statistics
Matches: 195, Mismatches: 36, Indels: 44
0.71 0.13 0.16
Matches are distributed among these distances:
17 19 0.10
18 142 0.73
19 17 0.09
20 1 0.01
24 1 0.01
25 2 0.01
26 12 0.06
27 1 0.01
ACGTcount: A:0.37, C:0.16, G:0.13, T:0.35
Consensus pattern (18 bp):
TTATTCAGTAACAGTCAA
Found at i:7704818 original size:72 final size:71
Alignment explanation
Indices: 7704684--7704885 Score: 228
Period size: 72 Copynumber: 2.8 Consensus size: 71
7704674 ATTGATCGGT
* * *
7704684 TATCCAGTAACAGTCAATTATTCAGTAAAATCAGA-TATTCAGTAACTATTAAGTTATTCAGTAG
1 TATCCAGTAACAATCAATTATTCAGTAAAATCA-ATTATTCAGTAA-TATTCAGTTATTCAGTAA
*
7704748 CAGTC-AT
64 CAGTCTAA
* * * *
7704755 TCATTCAGTGACAATCAGTTATTCAGTAATGATCAATTATTCAGTAATATTCAGTTATTCAGTAA
1 T-ATCCAGTAACAATCAATTATTCAGTAA-AATCAATTATTCAGTAATATTCAGTTATTCAGTAA
7704820 CAGTCTAA
64 CAGTCTAA
* * * * *
7704828 TATCCAGTAACAGTCAATTATCCGGTAACAGTCAATTATTCAGTAATAATCAGTTATT
1 TATCCAGTAACAATCAATTATTCAGTAA-AATCAATTATTCAGTAATATTCAGTTATT
7704886 TTATACCTTT
Statistics
Matches: 109, Mismatches: 18, Indels: 7
0.81 0.13 0.05
Matches are distributed among these distances:
71 1 0.01
72 92 0.84
73 16 0.15
ACGTcount: A:0.37, C:0.16, G:0.12, T:0.35
Consensus pattern (71 bp):
TATCCAGTAACAATCAATTATTCAGTAAAATCAATTATTCAGTAATATTCAGTTATTCAGTAACA
GTCTAA
Found at i:7705060 original size:6 final size:6
Alignment explanation
Indices: 7705049--7705073 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
7705039 ACAAATTCGG
7705049 AACAGT AACAGT AACAGT AACAGT A
1 AACAGT AACAGT AACAGT AACAGT A
7705074 TTCAACACAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.52, C:0.16, G:0.16, T:0.16
Consensus pattern (6 bp):
AACAGT
Found at i:7705102 original size:45 final size:45
Alignment explanation
Indices: 7705053--7705157 Score: 156
Period size: 45 Copynumber: 2.3 Consensus size: 45
7705043 ATTCGGAACA
* * * *
7705053 GTAACAGTAACAGTAACAGTATTCAACACACAAAGTGCTGAATCG
1 GTAACAGTAGCAGTAACAATATTCAACACACAAAATGCCGAATCG
* *
7705098 GTAACGGTAGCAGTAACAATATTCGACACACAAAATGCCGAATCG
1 GTAACAGTAGCAGTAACAATATTCAACACACAAAATGCCGAATCG
7705143 GTAACAGTAGCAGTA
1 GTAACAGTAGCAGTA
7705158 GCGGTAACAG
Statistics
Matches: 53, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
45 53 1.00
ACGTcount: A:0.41, C:0.20, G:0.20, T:0.19
Consensus pattern (45 bp):
GTAACAGTAGCAGTAACAATATTCAACACACAAAATGCCGAATCG
Found at i:7705423 original size:5 final size:5
Alignment explanation
Indices: 7705415--7705455 Score: 64
Period size: 5 Copynumber: 8.0 Consensus size: 5
7705405 ATTCCTTTCC
*
7705415 ATTCA ATTCA ATTCA ATTCA ATTCA ATTTA ATTCAA ATTCA
1 ATTCA ATTCA ATTCA ATTCA ATTCA ATTCA ATTC-A ATTCA
7705456 TTTTTCCACT
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
5 28 0.85
6 5 0.15
ACGTcount: A:0.41, C:0.17, G:0.00, T:0.41
Consensus pattern (5 bp):
ATTCA
Found at i:7705834 original size:21 final size:21
Alignment explanation
Indices: 7705809--7705869 Score: 63
Period size: 21 Copynumber: 2.9 Consensus size: 21
7705799 TTCAATTTCA
7705809 ATTCAATAA-CAATTCACATAT
1 ATTCAATAATCAATTCA-ATAT
7705830 ATTC-ATAAATCAATTCAATAT
1 ATTCAAT-AATCAATTCAATAT
* * *
7705851 AATCAATATTCAATCCAAT
1 ATTCAATAATCAATTCAAT
7705870 TCATATAATC
Statistics
Matches: 34, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
20 2 0.06
21 23 0.68
22 9 0.26
ACGTcount: A:0.48, C:0.18, G:0.00, T:0.34
Consensus pattern (21 bp):
ATTCAATAATCAATTCAATAT
Found at i:7707089 original size:27 final size:28
Alignment explanation
Indices: 7707025--7707093 Score: 79
Period size: 27 Copynumber: 2.4 Consensus size: 28
7707015 GAATATCCAA
*
7707025 CCCAAACACACCCGGAATATTATAAATCCT
1 CCCAAACACA-CCGG-ATATAATAAATCCT
*
7707055 -CCATAACACACCGG-TATAATATATCCT
1 CCCA-AACACACCGGATATAATAAATCCT
7707082 CCCAAACACACC
1 CCCAAACACACC
7707094 AATAAGGCAT
Statistics
Matches: 35, Mismatches: 2, Indels: 7
0.80 0.05 0.16
Matches are distributed among these distances:
27 19 0.54
28 3 0.09
29 7 0.20
30 6 0.17
ACGTcount: A:0.39, C:0.36, G:0.06, T:0.19
Consensus pattern (28 bp):
CCCAAACACACCGGATATAATAAATCCT
Found at i:7707720 original size:12 final size:12
Alignment explanation
Indices: 7707705--7707735 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
7707695 TTCTCTTTTA
7707705 TTTTTCTTTCCC
1 TTTTTCTTTCCC
*
7707717 TTTTTCTTTCTC
1 TTTTTCTTTCCC
7707729 TTTTTCT
1 TTTTTCT
7707736 CCCCTGCTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (12 bp):
TTTTTCTTTCCC
Found at i:7707836 original size:16 final size:16
Alignment explanation
Indices: 7707815--7707845 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
7707805 TTTATTATTT
7707815 TATTAACATAATATAA
1 TATTAACATAATATAA
*
7707831 TATTAATATAATATA
1 TATTAACATAATATA
7707846 TTAAAATATC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (16 bp):
TATTAACATAATATAA
Found at i:7710402 original size:27 final size:27
Alignment explanation
Indices: 7710371--7710423 Score: 88
Period size: 27 Copynumber: 2.0 Consensus size: 27
7710361 AGTGTACAAA
*
7710371 ATATTGAGAATGGCACTTAGTGTGCAG
1 ATATTGAGAATGACACTTAGTGTGCAG
*
7710398 ATATTGAGAGTGACACTTAGTGTGCA
1 ATATTGAGAATGACACTTAGTGTGCA
7710424 AAATATCGAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.30, C:0.11, G:0.28, T:0.30
Consensus pattern (27 bp):
ATATTGAGAATGACACTTAGTGTGCAG
Found at i:7717957 original size:24 final size:23
Alignment explanation
Indices: 7717903--7717968 Score: 71
Period size: 24 Copynumber: 2.7 Consensus size: 23
7717893 ACCCATTAAA
7717903 AATTAATAATCTTAAAAGCTCAAACC
1 AATTAA-AAT-TTAAAA-CTCAAACC
7717929 AATTAAAATTTAAAACTCAATACTC
1 AATTAAAATTTAAAACTCAA-AC-C
*
7717954 -ATTAATATTTAAAAC
1 AATTAAAATTTAAAAC
7717969 CTAAACTGGT
Statistics
Matches: 37, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
23 5 0.14
24 22 0.59
25 4 0.11
26 6 0.16
ACGTcount: A:0.52, C:0.15, G:0.02, T:0.32
Consensus pattern (23 bp):
AATTAAAATTTAAAACTCAAACC
Found at i:7721715 original size:9 final size:9
Alignment explanation
Indices: 7721701--7721730 Score: 51
Period size: 9 Copynumber: 3.2 Consensus size: 9
7721691 AGATATAATT
7721701 AAAATTTAA
1 AAAATTTAA
7721710 AAAATTTAA
1 AAAATTTAA
7721719 AATAATTTAA
1 AA-AATTTAA
7721729 AA
1 AA
7721731 TAAGAATTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 11 0.55
10 9 0.45
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (9 bp):
AAAATTTAA
Found at i:7721727 original size:10 final size:10
Alignment explanation
Indices: 7721703--7721733 Score: 55
Period size: 10 Copynumber: 3.2 Consensus size: 10
7721693 ATATAATTAA
7721703 AATTTAAAA-
1 AATTTAAAAT
7721712 AATTTAAAAT
1 AATTTAAAAT
7721722 AATTTAAAAT
1 AATTTAAAAT
7721732 AA
1 AA
7721734 GAATTATAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 9 0.43
10 12 0.57
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (10 bp):
AATTTAAAAT
Found at i:7722721 original size:12 final size:12
Alignment explanation
Indices: 7722704--7722729 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
7722694 TTAATTAATT
7722704 TAAAAAATTAAA
1 TAAAAAATTAAA
7722716 TAAAAAATTAAA
1 TAAAAAATTAAA
7722728 TA
1 TA
7722730 TTTTTTTATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (12 bp):
TAAAAAATTAAA
Done.