Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100714657
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 3970000 characters in sequence are not A, C, G, or T
File 196 of 318
Found at i:61715861 original size:22 final size:23
Alignment explanation
Indices: 61715828--61715873 Score: 67
Period size: 22 Copynumber: 2.0 Consensus size: 23
61715818 CCAAAATACT
61715828 AATCATTAAACCATAAACCCTAA
1 AATCATTAAACCATAAACCCTAA
* *
61715851 AATCA-TAAACCATAGACCTTAA
1 AATCATTAAACCATAAACCCTAA
61715873 A
1 A
61715874 CCTTAAACAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 16 0.76
23 5 0.24
ACGTcount: A:0.52, C:0.24, G:0.02, T:0.22
Consensus pattern (23 bp):
AATCATTAAACCATAAACCCTAA
Found at i:61716004 original size:41 final size:41
Alignment explanation
Indices: 61715915--61716028 Score: 124
Period size: 41 Copynumber: 2.8 Consensus size: 41
61715905 TAAAATAAAA
** **
61715915 TTATCATAAACATCT-CTACTGCTTCTCC-TTTGCAGTGTTT
1 TTATCATAAACA-CTGCTACTGCTTGACCTTTTGCAGCATTT
* *
61715955 TTACCATAAACACTGCTACTGCTTGACCTTTTGCGGCATTT
1 TTATCATAAACACTGCTACTGCTTGACCTTTTGCAGCATTT
* * *
61715996 TTATCATAAACGCCGCTACTACTTGACCTTTTG
1 TTATCATAAACACTGCTACTGCTTGACCTTTTG
61716029 TTAAAAACGG
Statistics
Matches: 62, Mismatches: 10, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
39 2 0.03
40 22 0.35
41 38 0.61
ACGTcount: A:0.22, C:0.26, G:0.12, T:0.39
Consensus pattern (41 bp):
TTATCATAAACACTGCTACTGCTTGACCTTTTGCAGCATTT
Found at i:61716179 original size:111 final size:111
Alignment explanation
Indices: 61715982--61716219 Score: 379
Period size: 111 Copynumber: 2.1 Consensus size: 111
61715972 ACTGCTTGAC
* *
61715982 CTTTTGCGGCATTTTTATCATAAACGCCGCTACTACTTGACCTTTTGTTAAAAACGGCGCTATAG
1 CTTTTGCGGCATTTTTATCATAAACCCCGCTACTACTTGACCTTTTGTTAAAAACGACGCTATAG
*
61716047 CTCTAACCTTTTGCGGCGTTTTCCTATTAGTGCCACTAATGTATAA
66 CTCTAACCTTTTGCGGCGTTTTCCTATTAGCGCCACTAATGTATAA
* * *
61716093 CTTTTGCGGCATTTTTATCATAAACCCCGCTGCTGCTTGACCTTTTGTTTAAAAC-ACAGCTATA
1 CTTTTGCGGCATTTTTATCATAAACCCCGCTACTACTTGACCTTTTGTTAAAAACGAC-GCTATA
* *
61716157 GCTCTAACCTTTTGTGGTGTTTTCCTATTAGCGCCACTAATGTATAA
65 GCTCTAACCTTTTGCGGCGTTTTCCTATTAGCGCCACTAATGTATAA
*
61716204 CTTTTGCGGCGTTTTT
1 CTTTTGCGGCATTTTT
61716220 TGTCCAAACG
Statistics
Matches: 117, Mismatches: 9, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
110 1 0.01
111 116 0.99
ACGTcount: A:0.21, C:0.23, G:0.16, T:0.39
Consensus pattern (111 bp):
CTTTTGCGGCATTTTTATCATAAACCCCGCTACTACTTGACCTTTTGTTAAAAACGACGCTATAG
CTCTAACCTTTTGCGGCGTTTTCCTATTAGCGCCACTAATGTATAA
Found at i:61716240 original size:12 final size:12
Alignment explanation
Indices: 61716225--61716252 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
61716215 TTTTTTGTCC
61716225 AAACGCCACTAA
1 AAACGCCACTAA
61716237 AAACGCCACTAA
1 AAACGCCACTAA
61716249 AAAC
1 AAAC
61716253 CTGTTTTCCT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.54, C:0.32, G:0.07, T:0.07
Consensus pattern (12 bp):
AAACGCCACTAA
Found at i:61716820 original size:38 final size:37
Alignment explanation
Indices: 61716744--61716822 Score: 97
Period size: 38 Copynumber: 2.1 Consensus size: 37
61716734 GAGCATTAGC
*
61716744 AGCGCTTATAAGGAAAAGCCGCTATATGTTGAGAATT
1 AGCGCTTATAAGGAAAAGCCGCTATATGTTGACAATT
* * *
61716781 AGCGCTTATATGAGAAATGCCGCTATA-GCTTGACCATT
1 AGCGCTTATAAG-GAAAAGCCGCTATATG-TTGACAATT
61716819 AGCG
1 AGCG
61716823 GCGCCTTGGA
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
37 12 0.33
38 24 0.67
ACGTcount: A:0.32, C:0.18, G:0.24, T:0.27
Consensus pattern (37 bp):
AGCGCTTATAAGGAAAAGCCGCTATATGTTGACAATT
Found at i:61717387 original size:21 final size:22
Alignment explanation
Indices: 61717363--61717407 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 22
61717353 TGATTTAGGG
*
61717363 TTTAACAGTTAGAGTTTAA-GA
1 TTTAACAGTTAGAGGTTAATGA
**
61717384 TTTAAGTGTTAGAGGTTAATGA
1 TTTAACAGTTAGAGGTTAATGA
61717406 TT
1 TT
61717408 AGGGTCGGGT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
21 16 0.80
22 4 0.20
ACGTcount: A:0.33, C:0.02, G:0.22, T:0.42
Consensus pattern (22 bp):
TTTAACAGTTAGAGGTTAATGA
Found at i:61717439 original size:21 final size:21
Alignment explanation
Indices: 61717414--61717463 Score: 57
Period size: 21 Copynumber: 2.3 Consensus size: 21
61717404 GATTAGGGTC
*
61717414 GGGTTAGGGGTTAGTGGTTTA-
1 GGGTTAGGGGTTA-TGATTTAG
*
61717435 GGGTTAAGGGTTTATGATTTAG
1 GGGTT-AGGGGTTATGATTTAG
61717457 GGGTTAG
1 GGGTTAG
61717464 AGTTTAATTA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
21 13 0.52
22 12 0.48
ACGTcount: A:0.18, C:0.00, G:0.44, T:0.38
Consensus pattern (21 bp):
GGGTTAGGGGTTATGATTTAG
Found at i:61718562 original size:157 final size:156
Alignment explanation
Indices: 61718269--61718618 Score: 402
Period size: 157 Copynumber: 2.2 Consensus size: 156
61718259 AAAATTAAGA
* ** * *
61718269 GATTAGTGGCGTTTTTAAAAAAAACGCTGCAAAAAATAGTATAGTTGAAAGAAAACGGCGTCGTT
1 GATTAGCGGCGTTTTTAAAAAAAACGCCACAAAAAACAGTATAGTTGAAAGAAAACGGCGCCGTT
* *
61718334 TTAGTTGGATAGAGTATTAGTGGCGTTTTGAAAAACGCCGCAACAGAAGTAAACTGTACTGGAAG
66 TTAGTT-GATAGAGTATTAGTGGCCTTTTGAAAAACGCCGCAAAAGAAGTAAACTGTACTGGAAG
* *
61718399 CGTCGTCGTTTTAGTTGAATATATAGAG
130 CGTCGTCATTTTAGTTAAATATATAG-G
* * * * *
61718427 GATT-GCGGCGTTTTTATAGAAAACGCCACAAAAGACAGTTTAGTTTAAAGAAAACGGCGCCGTT
1 GATTAGCGGCGTTTTTAAAAAAAACGCCACAAAAAACAGTATAGTTGAAAGAAAACGGCGCCGTT
* * * * * *
61718491 TTAGTAT-ATGAGGGTATTAGTGGCACTTTT-AAAAACGCCGCAAAATAATTAAATTTTACTGTA
66 TTAGT-TGAT-AGAGTATTAGTGGC-CTTTTGAAAAACGCCGCAAAAGAAGTAAACTGTACTGGA
61718554 CA-CGTCGTCATTTTAGTTAAATATATAGG
128 -AGCGTCGTCATTTTAGTTAAATATATAGG
* * **
61718583 GATTAGCGGCGTTTTTTAAATAAACGCTGCAAAAAA
1 GATTAGCGGCGTTTTTAAAAAAAACGCCACAAAAAA
61718619 TTAGTACTTA
Statistics
Matches: 160, Mismatches: 27, Indels: 11
0.81 0.14 0.06
Matches are distributed among these distances:
156 7 0.04
157 143 0.89
158 10 0.06
ACGTcount: A:0.35, C:0.13, G:0.22, T:0.30
Consensus pattern (156 bp):
GATTAGCGGCGTTTTTAAAAAAAACGCCACAAAAAACAGTATAGTTGAAAGAAAACGGCGCCGTT
TTAGTTGATAGAGTATTAGTGGCCTTTTGAAAAACGCCGCAAAAGAAGTAAACTGTACTGGAAGC
GTCGTCATTTTAGTTAAATATATAGG
Found at i:61720242 original size:8 final size:8
Alignment explanation
Indices: 61720229--61720286 Score: 50
Period size: 8 Copynumber: 7.4 Consensus size: 8
61720219 TGAGTATGAT
61720229 AATAGTGG
1 AATAGTGG
61720237 AATAGTGG
1 AATAGTGG
*
61720245 AATAGTGT
1 AATAGTGG
61720253 AAT--TGCG
1 AATAGTG-G
*
61720260 TATAGTGTG
1 AATAGTG-G
*
61720269 -ATAGTGT
1 AATAGTGG
61720276 AATAGTGG
1 AATAGTGG
61720284 AAT
1 AAT
61720287 TTTTTGATTG
Statistics
Matches: 40, Mismatches: 6, Indels: 8
0.74 0.11 0.15
Matches are distributed among these distances:
6 2 0.05
7 2 0.05
8 33 0.82
9 3 0.08
ACGTcount: A:0.34, C:0.02, G:0.31, T:0.33
Consensus pattern (8 bp):
AATAGTGG
Found at i:61721072 original size:99 final size:97
Alignment explanation
Indices: 61720945--61721129 Score: 266
Period size: 99 Copynumber: 1.9 Consensus size: 97
61720935 ATGTTTACTT
* **
61720945 AAATTAATAAATGCAAATTGAAAGAAAGACTTAACAA-GTTTAATGTCATTAAAT-TAAATATTT
1 AAATTAATAAATGCAAATTAAAAGAAAGACTTAACAATGTTTAAAAT-ATT--ATGTAAA-ATTT
*
61721008 TATTTTATTTTTATATTACCTAATTTTTAAATTAAC
62 TATTTTATTTTTAAATTACCTAATTTTTAAATTAAC
* *
61721044 AAATTAATAAATGCAAATTAAAAGAAAGACTTAACAATGTTTAAAATATTTTGTCAAATTTTATT
1 AAATTAATAAATGCAAATTAAAAGAAAGACTTAACAATGTTTAAAATATTATGTAAAATTTTATT
61721109 TTATTTTTAAATTACCTAATT
66 TTATTTTTAAATTACCTAATT
61721130 AAATTAAATT
Statistics
Matches: 78, Mismatches: 6, Indels: 6
0.87 0.07 0.07
Matches are distributed among these distances:
97 29 0.37
98 3 0.04
99 39 0.50
100 7 0.09
ACGTcount: A:0.45, C:0.07, G:0.06, T:0.42
Consensus pattern (97 bp):
AAATTAATAAATGCAAATTAAAAGAAAGACTTAACAATGTTTAAAATATTATGTAAAATTTTATT
TTATTTTTAAATTACCTAATTTTTAAATTAAC
Found at i:61721158 original size:5 final size:5
Alignment explanation
Indices: 61721150--61721174 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
61721140 GTATTTAAAG
61721150 TTTTA TTTTA TTTTA TTTTA TTTTA
1 TTTTA TTTTA TTTTA TTTTA TTTTA
61721175 ATCAAGAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (5 bp):
TTTTA
Found at i:61721214 original size:96 final size:96
Alignment explanation
Indices: 61721092--61721566 Score: 770
Period size: 96 Copynumber: 5.0 Consensus size: 96
61721082 GTTTAAAATA
* *
61721092 TTTTGTCAAATTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATT
1 TTTTGTCTACTTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATT
61721157 TTATTTTATTTTATTTTAATCAAGAAAAAAC
66 TTATTTTATTTTATTTTAATCAAGAAAAAAC
* *
61721188 TTTTGTCAAATTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATT
1 TTTTGTCTACTTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATT
*
61721253 TTATTTTATTTTATTTTAATCAGGAAAAAAC
66 TTATTTTATTTTATTTTAATCAAGAAAAAAC
61721284 --TTGTCTACTTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATT
1 TTTTGTCTACTTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATT
61721347 TTATTTTATTTTATTTTAATCACA-AAAAAAC
66 TTATTTTATTTTATTTTAATCA-AGAAAAAAC
* * *
61721378 CTTTGTCTACTTTTATTTTATTGTTAAATTACCTAATTAAAGTAAATTGTATTTAAAG-----TT
1 TTTTGTCTACTTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATT
*
61721438 TTATTTTATTTTATTTTAATCAGGAAAAAAAC
66 TTATTTTATTTTATTTTAATCAAG-AAAAAAC
*
61721470 TTTTGTCTACTTTTATTTTATTTTTAAATTACCTAAATAAATTAAATTGTATTTAAAGTTTTATT
1 TTTTGTCTACTTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATT
*
61721535 TTATTTTATTTTATTTTAATC-ACAAAAAAC
66 TTATTTTATTTTATTTTAATCAAGAAAAAAC
61721565 TT
1 TT
61721567 GTAAATAATT
Statistics
Matches: 356, Mismatches: 13, Indels: 21
0.91 0.03 0.05
Matches are distributed among these distances:
91 24 0.07
92 61 0.17
94 90 0.25
95 9 0.03
96 149 0.42
97 23 0.06
ACGTcount: A:0.35, C:0.07, G:0.05, T:0.54
Consensus pattern (96 bp):
TTTTGTCTACTTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATT
TTATTTTATTTTATTTTAATCAAGAAAAAAC
Found at i:61721254 original size:5 final size:5
Alignment explanation
Indices: 61721246--61721270 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
61721236 GTATTTAAAG
61721246 TTTTA TTTTA TTTTA TTTTA TTTTA
1 TTTTA TTTTA TTTTA TTTTA TTTTA
61721271 ATCAGGAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (5 bp):
TTTTA
Found at i:61721303 original size:190 final size:186
Alignment explanation
Indices: 61721093--61721566 Score: 781
Period size: 190 Copynumber: 2.5 Consensus size: 186
61721083 TTTAAAATAT
* *
61721093 TTTGTCAAATTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTT
1 TTTGTCTACTTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTT
*
61721158 TATTTTATTTTATTTTAATCAAGAAAAAACTTTTGTCAAATTTTATTTTATTTTTAAATTACCTA
66 TATTTTATTTTATTTTAATCAA-AAAAAACTTTTGTCAAATTTTATTTTATTGTTAAATTACCTA
*
61721223 ATTAAATTAAATTGTATTTAAAGTTTTATTTTATTTTATTTTATTTTAATCAGG-AAAAAAC
130 ATTAAAGTAAATTGTATTTAAAG-----TTTTATTTTATTTTATTTTAATCAGGAAAAAAAC
61721284 -TTGTCTACTTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTT
1 TTTGTCTACTTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTT
* * *
61721348 TATTTTATTTTATTTTAATCACAAAAAAACCTTTGTCTACTTTTATTTTATTGTTAAATTACCTA
66 TATTTTATTTTATTTTAATCA-AAAAAAACTTTTGTCAAATTTTATTTTATTGTTAAATTACCTA
61721413 ATTAAAGTAAATTGTATTTAAAGTTTTATTTTATTTTATTTTAATCAGGAAAAAAAC
130 ATTAAAGTAAATTGTATTTAAAGTTTTATTTTATTTTATTTTAATCAGGAAAAAAAC
*
61721470 TTTTGTCTACTTTTATTTTATTTTTAAATTACCTAAATAAATTAAATTGTATTTAAAGTTTTATT
1 -TTTGTCTACTTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATT
*
61721535 TTATTTTATTTTATTTTAATCACAAAAAACTT
65 TTATTTTATTTTATTTTAATCAAAAAAAACTT
61721567 GTAAATAATT
Statistics
Matches: 269, Mismatches: 10, Indels: 12
0.92 0.03 0.04
Matches are distributed among these distances:
185 26 0.10
186 7 0.03
187 8 0.03
188 84 0.31
190 143 0.53
191 1 0.00
ACGTcount: A:0.35, C:0.07, G:0.05, T:0.54
Consensus pattern (186 bp):
TTTGTCTACTTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTT
TATTTTATTTTATTTTAATCAAAAAAAACTTTTGTCAAATTTTATTTTATTGTTAAATTACCTAA
TTAAAGTAAATTGTATTTAAAGTTTTATTTTATTTTATTTTAATCAGGAAAAAAAC
Found at i:61721348 original size:5 final size:5
Alignment explanation
Indices: 61721340--61721364 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
61721330 GTATTTAAAG
61721340 TTTTA TTTTA TTTTA TTTTA TTTTA
1 TTTTA TTTTA TTTTA TTTTA TTTTA
61721365 ATCACAAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (5 bp):
TTTTA
Found at i:61721536 original size:5 final size:5
Alignment explanation
Indices: 61721528--61721552 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
61721518 GTATTTAAAG
61721528 TTTTA TTTTA TTTTA TTTTA TTTTA
1 TTTTA TTTTA TTTTA TTTTA TTTTA
61721553 ATCACAAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (5 bp):
TTTTA
Found at i:61721758 original size:9 final size:9
Alignment explanation
Indices: 61721746--61721852 Score: 83
Period size: 9 Copynumber: 11.7 Consensus size: 9
61721736 ATATATATAT
*
61721746 CATATTTTA
1 CATAATTTA
61721755 CATAATTTA
1 CATAATTTA
*
61721764 CATAACTTA
1 CATAATTTA
61721773 CATAA--TA
1 CATAATTTA
*
61721780 CATAAATATA
1 CAT-AATTTA
*
61721790 TATCACATCTTA
1 CAT-A-AT-TTA
*
61721802 AATAATTTA
1 CATAATTTA
*
61721811 CATAATTTG
1 CATAATTTA
* *
61721820 GATAACTTA
1 CATAATTTA
61721829 CATAATTTA
1 CATAATTTA
*
61721838 CATAACTTA
1 CATAATTTA
61721847 CATAAT
1 CATAAT
61721853 ACATAAATAT
Statistics
Matches: 78, Mismatches: 15, Indels: 10
0.76 0.15 0.10
Matches are distributed among these distances:
7 5 0.06
8 2 0.03
9 57 0.73
10 7 0.09
11 3 0.04
12 4 0.05
ACGTcount: A:0.45, C:0.14, G:0.02, T:0.39
Consensus pattern (9 bp):
CATAATTTA
Found at i:61721773 original size:18 final size:18
Alignment explanation
Indices: 61721752--61721852 Score: 98
Period size: 18 Copynumber: 5.5 Consensus size: 18
61721742 ATATCATATT
61721752 TTACATAATTTACATAAC
1 TTACATAATTTACATAAC
*
61721770 TTACATAA--TACATAAA
1 TTACATAATTTACATAAC
* * *
61721786 TATATATCACATCTTAAATAAT
1 T-TACAT-A-AT-TTACATAAC
**
61721808 TTACATAATTTGGATAAC
1 TTACATAATTTACATAAC
61721826 TTACATAATTTACATAAC
1 TTACATAATTTACATAAC
61721844 TTACATAAT
1 TTACATAAT
61721853 ACATAAATAT
Statistics
Matches: 67, Mismatches: 10, Indels: 12
0.75 0.11 0.13
Matches are distributed among these distances:
16 8 0.12
17 4 0.06
18 40 0.60
19 3 0.04
20 1 0.01
21 4 0.06
22 7 0.10
ACGTcount: A:0.46, C:0.14, G:0.02, T:0.39
Consensus pattern (18 bp):
TTACATAATTTACATAAC
Found at i:61726949 original size:13 final size:14
Alignment explanation
Indices: 61726933--61726961 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
61726923 TTCTAAATAT
61726933 TTATAA-TGTTTAA
1 TTATAATTGTTTAA
61726946 TTATAATTGTTTAA
1 TTATAATTGTTTAA
61726960 TT
1 TT
61726962 CAATTCATCA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 6 0.40
14 9 0.60
ACGTcount: A:0.34, C:0.00, G:0.07, T:0.59
Consensus pattern (14 bp):
TTATAATTGTTTAA
Found at i:61727414 original size:21 final size:21
Alignment explanation
Indices: 61727371--61727415 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
61727361 ACTTAGAGCG
*
61727371 GAGGCAGCAGCGAGGGAGACA
1 GAGGCAGCAGCGAGGCAGACA
*
61727392 GAGGCAGCATCGATGGCAG-CA
1 GAGGCAGCAGCGA-GGCAGACA
61727413 GAG
1 GAG
61727416 TAGAGCAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 17 0.81
22 4 0.19
ACGTcount: A:0.31, C:0.20, G:0.44, T:0.04
Consensus pattern (21 bp):
GAGGCAGCAGCGAGGCAGACA
Found at i:61728485 original size:21 final size:23
Alignment explanation
Indices: 61728441--61728487 Score: 62
Period size: 21 Copynumber: 2.1 Consensus size: 23
61728431 AGTAAAGTGT
* *
61728441 ATTAAATATATTATATAAATTTA
1 ATTAAATATATTATAAAAAATTA
61728464 ATTAAA-AT-TTATAAAAAATTA
1 ATTAAATATATTATAAAAAATTA
61728485 ATT
1 ATT
61728488 TTTAAATAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 14 0.64
22 2 0.09
23 6 0.27
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (23 bp):
ATTAAATATATTATAAAAAATTA
Found at i:61728832 original size:68 final size:67
Alignment explanation
Indices: 61728737--61728865 Score: 249
Period size: 68 Copynumber: 1.9 Consensus size: 67
61728727 ATTGTAATAA
61728737 ATAATATATATGATTGGATTTATTTCTTTACAAAAAAAAAGTTAAAAATTAATATACAATTCTAA
1 ATAATATATATGATTGGATTTATTTCTTTAC-AAAAAAAAGTTAAAAATTAATATACAATTCTAA
61728802 TCT
65 TCT
61728805 ATAATATATATGATTGGATTTATTTCTTTACAAAAAAAAGTTAAAAATTAATATACAATTC
1 ATAATATATATGATTGGATTTATTTCTTTACAAAAAAAAGTTAAAAATTAATATACAATTC
61728866 CTTAATTTAA
Statistics
Matches: 61, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
67 30 0.49
68 31 0.51
ACGTcount: A:0.47, C:0.07, G:0.06, T:0.40
Consensus pattern (67 bp):
ATAATATATATGATTGGATTTATTTCTTTACAAAAAAAAGTTAAAAATTAATATACAATTCTAAT
CT
Found at i:61733731 original size:45 final size:45
Alignment explanation
Indices: 61733668--61733757 Score: 171
Period size: 45 Copynumber: 2.0 Consensus size: 45
61733658 GGTTGCATGT
61733668 TGATGATAACTGGGTGCGCTTGTATACGGATGCATCCGTTCAGAA
1 TGATGATAACTGGGTGCGCTTGTATACGGATGCATCCGTTCAGAA
*
61733713 TGATGGTAACTGGGTGCGCTTGTATACGGATGCATCCGTTCAGAA
1 TGATGATAACTGGGTGCGCTTGTATACGGATGCATCCGTTCAGAA
61733758 AGTTTTGCTG
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 44 1.00
ACGTcount: A:0.23, C:0.18, G:0.30, T:0.29
Consensus pattern (45 bp):
TGATGATAACTGGGTGCGCTTGTATACGGATGCATCCGTTCAGAA
Found at i:61741785 original size:25 final size:26
Alignment explanation
Indices: 61741725--61741773 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
61741715 ATTTGTTTTA
*
61741725 ATATTTG-TTT-TTATGTTTTTAAAC
1 ATATTTGATTTATTATATTTTTAAAC
61741749 ATATTTGATTTATTATATTTTTAAA
1 ATATTTGATTTATTATATTTTTAAA
61741774 ATTTTTTATT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 7 0.32
25 3 0.14
26 12 0.55
ACGTcount: A:0.31, C:0.02, G:0.06, T:0.61
Consensus pattern (26 bp):
ATATTTGATTTATTATATTTTTAAAC
Found at i:61744783 original size:20 final size:21
Alignment explanation
Indices: 61744758--61744798 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
61744748 GTTTAAAAAC
*
61744758 ATAAAAA-AATATTAAAACAA
1 ATAAAAATAATACTAAAACAA
*
61744778 ATAAAAATGATACTAAAACAA
1 ATAAAAATAATACTAAAACAA
61744799 TTCTTAAAAC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 7 0.39
21 11 0.61
ACGTcount: A:0.71, C:0.07, G:0.02, T:0.20
Consensus pattern (21 bp):
ATAAAAATAATACTAAAACAA
Found at i:61747706 original size:48 final size:47
Alignment explanation
Indices: 61747386--61747705 Score: 410
Period size: 48 Copynumber: 6.7 Consensus size: 47
61747376 CGCACCCTAG
61747386 GTGCTAATATCATGGCCCGAAGCCAAATCAATGAAGC-CTGCACCTGAA
1 GTGCTAATATCATGGCCCGAAGCCAAATCAATGAA-CTC-GCACCTGAA
*
61747434 GTGCTAATATCATGGCCCGAAGCCAAATCAATGAAGCTCGCACCCGAA
1 GTGCTAATATCATGGCCCGAAGCCAAATCAATGAA-CTCGCACCTGAA
* * **
61747482 GTGCCAATATCATGACCCGAAGCCAAATCAATGAAGCTCATA-CTCGAA
1 GTGCTAATATCATGGCCCGAAGCCAAATCAATGAA-CTCGCACCT-GAA
* * * * *
61747530 GTGCCAATATCATTGCCCGAAGTCAAATCAATGTAACTCACACCCGAA
1 GTGCTAATATCATGGCCCGAAGCCAAATCAATG-AACTCGCACCTGAA
**
61747578 GTGCTAATATCATGGCCCTTAGCCAAATCAATGTAACTCGCACCTGAA
1 GTGCTAATATCATGGCCCGAAGCCAAATCAATG-AACTCGCACCTGAA
** *
61747626 GCACTAATATCATGGCCCGAAGCCAAATCAATAGAACTCGCACATGAA
1 GTGCTAATATCATGGCCCGAAGCCAAATCAAT-GAACTCGCACCTGAA
*
61747674 GTGCTAATATTATGGCCCGAAGCCAAATCAAT
1 GTGCTAATATCATGGCCCGAAGCCAAATCAAT
61747706 ATAACTCCTA
Statistics
Matches: 241, Mismatches: 26, Indels: 10
0.87 0.09 0.04
Matches are distributed among these distances:
47 1 0.00
48 235 0.98
49 5 0.02
ACGTcount: A:0.35, C:0.27, G:0.18, T:0.20
Consensus pattern (47 bp):
GTGCTAATATCATGGCCCGAAGCCAAATCAATGAACTCGCACCTGAA
Found at i:61757094 original size:14 final size:13
Alignment explanation
Indices: 61757071--61757102 Score: 55
Period size: 14 Copynumber: 2.4 Consensus size: 13
61757061 GGGATATCAA
61757071 AACAATAATTAAG
1 AACAATAATTAAG
61757084 AACACATAATTAAG
1 AACA-ATAATTAAG
61757098 AACAA
1 AACAA
61757103 GTTAAATATT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 5 0.28
14 13 0.72
ACGTcount: A:0.62, C:0.12, G:0.06, T:0.19
Consensus pattern (13 bp):
AACAATAATTAAG
Found at i:61758339 original size:6 final size:7
Alignment explanation
Indices: 61758323--61758348 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
61758313 TTATACATAG
61758323 TTTTTAT
1 TTTTTAT
61758330 TTTTTAT
1 TTTTTAT
61758337 TTTTTAT
1 TTTTTAT
61758344 TTTTT
1 TTTTT
61758349 GTTAAGAACA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (7 bp):
TTTTTAT
Found at i:61759243 original size:17 final size:17
Alignment explanation
Indices: 61759217--61759254 Score: 67
Period size: 17 Copynumber: 2.2 Consensus size: 17
61759207 TTTGAAAAGG
61759217 AAAACAAATGAATCTTA
1 AAAACAAATGAATCTTA
*
61759234 AAAACGAATGAATCTTA
1 AAAACAAATGAATCTTA
61759251 AAAA
1 AAAA
61759255 TGTAATAAAG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.61, C:0.11, G:0.08, T:0.21
Consensus pattern (17 bp):
AAAACAAATGAATCTTA
Found at i:61767634 original size:27 final size:27
Alignment explanation
Indices: 61767604--61767660 Score: 105
Period size: 27 Copynumber: 2.1 Consensus size: 27
61767594 CCTATCAATA
*
61767604 ATATCTCAAAATAAACCATAAGTAATC
1 ATATCTCAAAATAAACCATAAGTAAAC
61767631 ATATCTCAAAATAAACCATAAGTAAAC
1 ATATCTCAAAATAAACCATAAGTAAAC
61767658 ATA
1 ATA
61767661 CATTGAGAAT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.54, C:0.18, G:0.04, T:0.25
Consensus pattern (27 bp):
ATATCTCAAAATAAACCATAAGTAAAC
Found at i:61780850 original size:32 final size:32
Alignment explanation
Indices: 61780797--61780868 Score: 99
Period size: 32 Copynumber: 2.2 Consensus size: 32
61780787 GGTCAGGTAA
* * *
61780797 GGCCATGTACGACACATGGGCTCGACCTATTG
1 GGCCGTGTACGACACACGGGCTCAACCTATTG
* *
61780829 GGCTGTGTATGACACACGGGCTCAACCTATTG
1 GGCCGTGTACGACACACGGGCTCAACCTATTG
61780861 GGCCGTGT
1 GGCCGTGT
61780869 GGGCCACATG
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.24
Consensus pattern (32 bp):
GGCCGTGTACGACACACGGGCTCAACCTATTG
Found at i:61785468 original size:352 final size:349
Alignment explanation
Indices: 61784930--61785617 Score: 1076
Period size: 352 Copynumber: 2.0 Consensus size: 349
61784920 GTGATAGTCA
* * *
61784930 ATTTATAATAATAAGTATAATTTAATATGAACCCAAAGTCTAATTAAAATGATAAAATTACTATT
1 ATTTATAATAATAAATATAATTTAATACGAACCCAAAGTCCAATTAAAATGATAAAATTACTATT
* *
61784995 TATTTTATATAAAAACACTATTAATAAAATAGTTATAATTATTTTTTAATGTCAATAATATCAAA
66 TATTTTATATAAAAACACTATTAATAAAATAATTATAATTATTTTTTAATCTCAATAATATCAAA
* *
61785060 TTCATTCCCATATATTTTCCTAAACATGCGAATAATTATAAAAATGTCCAATCTTATCAAATATC
131 TTCAATCCCATATATTTTCATAAACATGCGAATAATTATAAAAATGTCCAATCTTATCAAATATC
* *
61785125 AATAAAAAAAGATGGAGAGAAAAATTCGGTCTC-AGTTTACACTATAAATATAGCACAACATGGC
196 AATAAAAAAAGATGAAGAGAAAAATTCAGTCTCGA-TTTACACTATAAATATAGCACAACATGGC
* *
61785189 ACTTTGATACCAATTATTGGAAAAAATTCAGTTTGAAAACGATTTT-TTTCATAGTGGAAAATTA
260 ACTCTGATACCAATTATTGGAAAAAATTCAGTTTGAAAACGATTTTCTTTCATAGCGGAAAATTA
61785253 AAATTTTGAAAATCGACCCGGCTAT
325 AAATTTTGAAAATCGACCCGGCTAT
* *
61785278 ATTTATAATAATAAATATAATTTAATACGAATCCAAAGTCCAATTAAAATTATAAAATTAGCTAT
1 ATTTATAATAATAAATATAATTTAATACGAACCCAAAGTCCAATTAAAATGATAAAATTA-CTAT
* * *
61785343 TTATTTTATATAAAAACAGTATTGATAAAATAATTATAATTATTGTTTTTTATTCTCAATAATAT
65 TTATTTTATATAAAAACACTATTAATAAAATAATTATAATTA---TTTTTTAATCTCAATAATAT
* *
61785408 CACATTCAATCCCATATATTTTTATAAACATGCGAATAATTATAAAAATG-CCACATCTTATCAA
127 CAAATTCAATCCCATATATTTTCATAAACATGCGAATAATTATAAAAATGTCCA-ATCTTATCAA
* * * * *
61785472 ATATCAATCAAACAAGATGAAGAGAGAGATTCAGTCTCGATTTACACTATAAATATAGCATAACA
191 ATATCAATAAAAAAAGATGAAGAGAAAAATTCAGTCTCGATTTACACTATAAATATAGCACAACA
* *
61785537 TGGCACTCTGATACCAATTATTGGAAAAAATTCAGTTTGAAAACGGTTTTCTTTCATAGCGGAAT
256 TGGCACTCTGATACCAATTATTGGAAAAAATTCAGTTTGAAAACGATTTTCTTTCATAGCGGAAA
61785602 ATTAAAATTTTGAAAA
321 ATTAAAATTTTGAAAA
61785618 ACGATCTGAT
Statistics
Matches: 308, Mismatches: 25, Indels: 9
0.90 0.07 0.03
Matches are distributed among these distances:
348 55 0.18
349 43 0.14
351 3 0.01
352 178 0.58
353 29 0.09
ACGTcount: A:0.43, C:0.12, G:0.09, T:0.35
Consensus pattern (349 bp):
ATTTATAATAATAAATATAATTTAATACGAACCCAAAGTCCAATTAAAATGATAAAATTACTATT
TATTTTATATAAAAACACTATTAATAAAATAATTATAATTATTTTTTAATCTCAATAATATCAAA
TTCAATCCCATATATTTTCATAAACATGCGAATAATTATAAAAATGTCCAATCTTATCAAATATC
AATAAAAAAAGATGAAGAGAAAAATTCAGTCTCGATTTACACTATAAATATAGCACAACATGGCA
CTCTGATACCAATTATTGGAAAAAATTCAGTTTGAAAACGATTTTCTTTCATAGCGGAAAATTAA
AATTTTGAAAATCGACCCGGCTAT
Found at i:61788933 original size:8 final size:8
Alignment explanation
Indices: 61788920--61788949 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
61788910 ATATAAGTAA
61788920 ATATTATT
1 ATATTATT
61788928 ATATTATT
1 ATATTATT
61788936 ATATTATT
1 ATATTATT
*
61788944 ACATTA
1 ATATTA
61788950 CATTAATTAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.40, C:0.03, G:0.00, T:0.57
Consensus pattern (8 bp):
ATATTATT
Found at i:61791521 original size:108 final size:110
Alignment explanation
Indices: 61791374--61791574 Score: 300
Period size: 108 Copynumber: 1.8 Consensus size: 110
61791364 ATCCTTTTGA
* *
61791374 AACTTACCATTGTCATGTCTCGACATGGTCTTACATGGTATCCTTGCCTTATG-AA-CTCACTAA
1 AACTTACCAATGTCATGTCTCGACATGGTCTTACATGGTATCCTTGCCTTA-GAAACCTCACCAA
*
61791437 -TGCCATGCCTTGACATGGTTTTACATGGGACCTTTGTCTTATAGT
65 TTGCCATGCCTTGACATGGTCTTACATGGGACCTTTGTCTTATAGT
* * * *
61791482 AACTTATCAATGTCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTAGAAACCTTACCAAT
1 AACTTACCAATGTCATGTCTCGACATGGTCTTACATGGTATCCTTGCCTTAGAAACCTCACCAAT
*
61791547 TGCCATGCCTTGATATGGTCTTACATGG
66 TGCCATGCCTTGACATGGTCTTACATGG
61791575 TATCCTTAAA
Statistics
Matches: 82, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
107 1 0.01
108 49 0.60
109 6 0.07
110 26 0.32
ACGTcount: A:0.23, C:0.23, G:0.18, T:0.36
Consensus pattern (110 bp):
AACTTACCAATGTCATGTCTCGACATGGTCTTACATGGTATCCTTGCCTTAGAAACCTCACCAAT
TGCCATGCCTTGACATGGTCTTACATGGGACCTTTGTCTTATAGT
Found at i:61799194 original size:55 final size:53
Alignment explanation
Indices: 61799051--61799258 Score: 188
Period size: 55 Copynumber: 3.8 Consensus size: 53
61799041 ATCCTTTTGA
* ** * *
61799051 AACTTACCATTGCCATGTCCCGGCATGGTCTTACATGGTATCCTTGCCTTATG
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATG
* * *
61799104 AACTCACCAATGCCATGCCTT-AGCATGGTCTTACATGGGA-CCTTTGTCTTATAG
1 AACTTACCAATGCCATGTCTTGA-CATGGTCTTACATGGGATCC-TTGCCTTAT-G
* * *
61799158 TAACTTATCAATGCCATGTCTTGACATGATCTTACATGGTATCCTTGCCTTA-G
1 -AACTTACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATG
* * * * *
61799211 AAACCTTACCAATTTCCATGCCCTGGCATGGTCTTACATGGTATCCTT
1 -AA-CTTACCAA-TGCCATGTCTTGACATGGTCTTACATGGGATCCTT
61799259 AAACCCTAAT
Statistics
Matches: 126, Mismatches: 21, Indels: 14
0.78 0.13 0.09
Matches are distributed among these distances:
52 2 0.02
53 43 0.34
54 8 0.06
55 70 0.56
56 3 0.02
ACGTcount: A:0.23, C:0.26, G:0.17, T:0.34
Consensus pattern (53 bp):
AACTTACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATG
Found at i:61799197 original size:108 final size:110
Alignment explanation
Indices: 61799051--61799251 Score: 282
Period size: 108 Copynumber: 1.8 Consensus size: 110
61799041 ATCCTTTTGA
* * *
61799051 AACTTACCATTGCCATGTCCCGGCATGGTCTTACATGGTATCCTTGCCTTATG-AA-CTCACCAA
1 AACTTACCAATGCCATGTCCCGACATGATCTTACATGGTATCCTTGCCTTA-GAAACCTCACCAA
*
61799114 -TGCCATGCCTTAGCATGGTCTTACATGGGACCTTTGTCTTATAGT
65 TTGCCATGCCCTAGCATGGTCTTACATGGGACCTTTGTCTTATAGT
* ** *
61799159 AACTTATCAATGCCATGTCTTGACATGATCTTACATGGTATCCTTGCCTTAGAAACCTTACCAAT
1 AACTTACCAATGCCATGTCCCGACATGATCTTACATGGTATCCTTGCCTTAGAAACCTCACCAAT
* *
61799224 TTCCATGCCCTGGCATGGTCTTACATGG
66 TGCCATGCCCTAGCATGGTCTTACATGG
61799252 TATCCTTAAA
Statistics
Matches: 80, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
107 1 0.01
108 47 0.59
109 7 0.09
110 25 0.31
ACGTcount: A:0.23, C:0.26, G:0.17, T:0.33
Consensus pattern (110 bp):
AACTTACCAATGCCATGTCCCGACATGATCTTACATGGTATCCTTGCCTTAGAAACCTCACCAAT
TGCCATGCCCTAGCATGGTCTTACATGGGACCTTTGTCTTATAGT
Found at i:61801161 original size:45 final size:45
Alignment explanation
Indices: 61800997--61801158 Score: 254
Period size: 45 Copynumber: 3.6 Consensus size: 45
61800987 CTGACATTTC
61800997 GCCTGCTAGGCTC-AAGGCCCGAATAATATCTCACCGGCATTATA
1 GCCTGCTAGGCTCAAAGGCCCGAATAATATCTCACCGGCATTATA
*
61801041 GCCTGCTAGGCTCAAAAAGGCCCGAATAATATCTCACCAGCATTATA
1 GCCTGCTAGGCTC--AAAGGCCCGAATAATATCTCACCGGCATTATA
** * *
61801088 GCCTGCTAGGCTCAAAGTTCCGAATAGTATCTCACCGGTATTATA
1 GCCTGCTAGGCTCAAAGGCCCGAATAATATCTCACCGGCATTATA
61801133 GCCTGCTAGGCTCAAAGGCCCGAATA
1 GCCTGCTAGGCTCAAAGGCCCGAATA
61801159 GTACTGTACA
Statistics
Matches: 107, Mismatches: 8, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
44 13 0.12
45 51 0.48
47 43 0.40
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (45 bp):
GCCTGCTAGGCTCAAAGGCCCGAATAATATCTCACCGGCATTATA
Found at i:61802223 original size:11 final size:11
Alignment explanation
Indices: 61802207--61802232 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
61802197 TCCAATGTTT
61802207 CCAATTTAGTC
1 CCAATTTAGTC
61802218 CCAATTTAGTC
1 CCAATTTAGTC
61802229 CCAA
1 CCAA
61802233 ATCATTTCTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.31, C:0.31, G:0.08, T:0.31
Consensus pattern (11 bp):
CCAATTTAGTC
Found at i:61810273 original size:16 final size:16
Alignment explanation
Indices: 61810252--61810294 Score: 61
Period size: 15 Copynumber: 2.7 Consensus size: 16
61810242 AAACAAAAAT
61810252 AAAATAAAATTACATA
1 AAAATAAAATTACATA
*
61810268 AAAAT-AAATTCCATA
1 AAAATAAAATTACATA
61810283 AAAATTAAAATT
1 AAAA-TAAAATT
61810295 TTTCGACCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
15 13 0.54
16 6 0.25
17 5 0.21
ACGTcount: A:0.65, C:0.07, G:0.00, T:0.28
Consensus pattern (16 bp):
AAAATAAAATTACATA
Found at i:61812903 original size:332 final size:333
Alignment explanation
Indices: 61812115--61813104 Score: 1874
Period size: 332 Copynumber: 3.0 Consensus size: 333
61812105 AAACCCGATT
*
61812115 TGAGATTTTAGGAAAATCTCGTTTGTATGTAAAATCCTTTTCTGTAAGCAATTTATCAAGCATGC
1 TGAGATTTTAGGAAAATCTCGTTTGTGTGTAAAATCCTTTTCTGTAAGCAATTTATCAAGCATGC
* *
61812180 AAAATAACGAACGTTCAAATCCAAAATTAAGTTAAAATTGAATAGTCCAGAGAGTCCCTAAAATT
66 AAAATAACGAACGTTCAAATCCAAAATTAAGTTAAAATCGAATAGTCCAGGGAGTCCCTAAAATT
61812245 TACAACTCTCAAAACAGTCCAAATTTTAAATTAACCAAAATACCAAGTTTTAGCAGTTTACAATA
131 TACAACTCTCAAAACAGTCCAAATTTTAAATTAACCAAAATACCAAGTTTTAGCAGTTTACAATA
* *
61812310 AAGTGGCCACCCCTAAGTCTCTGCTGCACCGATCTGCCTAACTCTGTGGATTGCCTGTACAGAAT
196 AAGTGGCCACCCCTGAGTCTCTGCTGCACCGATCCGCCTAACTCTGTGGATTGCCTGTACAGAAT
61812375 AAATAGAAAAGAGTGATTTTGTGTAAGCTCAGTGTGTAACCCCACAAAATTAAGCATGCAAAAAT
261 AAATAGAAAAGAGTGATTTTGTGTAAGCTCAGTGTGTAACCCCACAAAATTAAGCATGCAAAAAT
61812440 AACGAACG
326 AACGAACG
61812448 TGAGATTTTAGGAAAATCTCGTTTGTGTGTAAAATCCTTTTCTGTAAGCAATTTATCAAGCATGC
1 TGAGATTTTAGGAAAATCTCGTTTGTGTGTAAAATCCTTTTCTGTAAGCAATTTATCAAGCATGC
61812513 AAAATAACGAACGTTCAAATCCAAAATTAAGTTAAAATCGAATAGTCCAGGGAGTCCCTAAAATT
66 AAAATAACGAACGTTCAAATCCAAAATTAAGTTAAAATCGAATAGTCCAGGGAGTCCCTAAAATT
*
61812578 TACAACTCTCAAAACAGTCCAAATTTTAAATTAACCAAAATACCAAGTTTTAGTAGTTTACAATA
131 TACAACTCTCAAAACAGTCCAAATTTTAAATTAACCAAAATACCAAGTTTTAGCAGTTTACAATA
61812643 AAGTGGCCACCCCTGAGTCTCTGCTGCACCGATCCGCCTAACTCTGTGGATTGCCTGTACAGAAT
196 AAGTGGCCACCCCTGAGTCTCTGCTGCACCGATCCGCCTAACTCTGTGGATTGCCTGTACAGAAT
61812708 AAATAGAAAAGAGTGATTTTGTGTAA-CTCAGTGTGTAACCCCACAAAATTAAGCATGCAAAAAT
261 AAATAGAAAAGAGTGATTTTGTGTAAGCTCAGTGTGTAACCCCACAAAATTAAGCATGCAAAAAT
*
61812772 AATGAACG
326 AACGAACG
61812780 TGAGATTTTAGGAAAATCTCGTTTGTGTGTAAAATCCTTTTCTGTAAGCAATTTATCAAGCATGC
1 TGAGATTTTAGGAAAATCTCGTTTGTGTGTAAAATCCTTTTCTGTAAGCAATTTATCAAGCATGC
* *
61812845 AAAATAACGAATGTTCAAATCCAAAATTAAGTTAAAATCGAACAGTCCAGGGAGTCCCTAAAATT
66 AAAATAACGAACGTTCAAATCCAAAATTAAGTTAAAATCGAATAGTCCAGGGAGTCCCTAAAATT
61812910 TACAACTCTCAAAACAGTCCAAATTTTAAATTAACCAAAATACCAAGTTTTAGCAGTTTACAATA
131 TACAACTCTCAAAACAGTCCAAATTTTAAATTAACCAAAATACCAAGTTTTAGCAGTTTACAATA
* *
61812975 AAGTGGCCACCCCTGAGTCTCTGTTACACCGATCCGCCTAACTCTGTGGATTGCCTGTACAGAAT
196 AAGTGGCCACCCCTGAGTCTCTGCTGCACCGATCCGCCTAACTCTGTGGATTGCCTGTACAGAAT
61813040 AAATAGAAAAGAGTGATTTTGTGTAAGCTCAGTGTGTAACCCCACAAAATTAAGCATGCAAAAAT
261 AAATAGAAAAGAGTGATTTTGTGTAAGCTCAGTGTGTAACCCCACAAAATTAAGCATGCAAAAAT
61813105 CCGTACAATC
Statistics
Matches: 644, Mismatches: 12, Indels: 2
0.98 0.02 0.00
Matches are distributed among these distances:
332 326 0.51
333 318 0.49
ACGTcount: A:0.37, C:0.19, G:0.16, T:0.28
Consensus pattern (333 bp):
TGAGATTTTAGGAAAATCTCGTTTGTGTGTAAAATCCTTTTCTGTAAGCAATTTATCAAGCATGC
AAAATAACGAACGTTCAAATCCAAAATTAAGTTAAAATCGAATAGTCCAGGGAGTCCCTAAAATT
TACAACTCTCAAAACAGTCCAAATTTTAAATTAACCAAAATACCAAGTTTTAGCAGTTTACAATA
AAGTGGCCACCCCTGAGTCTCTGCTGCACCGATCCGCCTAACTCTGTGGATTGCCTGTACAGAAT
AAATAGAAAAGAGTGATTTTGTGTAAGCTCAGTGTGTAACCCCACAAAATTAAGCATGCAAAAAT
AACGAACG
Found at i:61817394 original size:49 final size:49
Alignment explanation
Indices: 61817339--61817438 Score: 182
Period size: 49 Copynumber: 2.0 Consensus size: 49
61817329 GTATGGCATT
*
61817339 CTTCTTTATCCTTACATTGAATAGATTCGAAAGCACTAAAGGTAACATG
1 CTTCTTTATCCTTACATTGAATAGATTCGAAAACACTAAAGGTAACATG
*
61817388 CTTCTTTATCCTTGCATTGAATAGATTCGAAAACACTAAAGGTAACATG
1 CTTCTTTATCCTTACATTGAATAGATTCGAAAACACTAAAGGTAACATG
61817437 CT
1 CT
61817439 CATCATTAAG
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 49 1.00
ACGTcount: A:0.34, C:0.19, G:0.14, T:0.33
Consensus pattern (49 bp):
CTTCTTTATCCTTACATTGAATAGATTCGAAAACACTAAAGGTAACATG
Found at i:61819899 original size:16 final size:17
Alignment explanation
Indices: 61819880--61819913 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
61819870 AAATATTATG
61819880 AAATAAAAAT-AAACAA
1 AAATAAAAATCAAACAA
*
61819896 AAATAAACATCAAACAA
1 AAATAAAAATCAAACAA
61819913 A
1 A
61819914 CTCCCTCCCC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 9 0.56
17 7 0.44
ACGTcount: A:0.76, C:0.12, G:0.00, T:0.12
Consensus pattern (17 bp):
AAATAAAAATCAAACAA
Found at i:61821458 original size:28 final size:28
Alignment explanation
Indices: 61821397--61821461 Score: 78
Period size: 28 Copynumber: 2.3 Consensus size: 28
61821387 TATTGGGACT
* *
61821397 ATCTAGAGCTGGGAAGTCTACCAAGGTCA
1 ATCTAAAG-TGGGAAGTCTACCAAGGTAA
*
61821426 ATCTAAAGTGGGAAGTCTGCCAAGG-AA
1 ATCTAAAGTGGGAAGTCTACCAAGGTAA
61821453 AGTCTAAAG
1 A-TCTAAAG
61821462 AAACGATAGT
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
27 2 0.06
28 23 0.72
29 7 0.22
ACGTcount: A:0.35, C:0.17, G:0.28, T:0.20
Consensus pattern (28 bp):
ATCTAAAGTGGGAAGTCTACCAAGGTAA
Found at i:61825157 original size:26 final size:27
Alignment explanation
Indices: 61825114--61825175 Score: 65
Period size: 26 Copynumber: 2.4 Consensus size: 27
61825104 AACACGTCAG
* **
61825114 GAAAGAAAG-CTTATGTGGTGTAATAT
1 GAAAGAAAGCCTGATGTGGCATAATAT
*
61825140 GAAAGAAAGCCTGA-GTGGCATAATCT
1 GAAAGAAAGCCTGATGTGGCATAATAT
*
61825166 GAAGGAAAGC
1 GAAAGAAAGC
61825176 TTGTATGGCG
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
26 27 0.90
27 3 0.10
ACGTcount: A:0.40, C:0.10, G:0.29, T:0.21
Consensus pattern (27 bp):
GAAAGAAAGCCTGATGTGGCATAATAT
Found at i:61840121 original size:24 final size:24
Alignment explanation
Indices: 61840089--61840139 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
61840079 GATATTCTAG
* * *
61840089 TAGAGATAGAGGTAGTCGACACTC
1 TAGAAATAGAGGAACTCGACACTC
*
61840113 TAGAAATAGAGGAACTTGACACTC
1 TAGAAATAGAGGAACTCGACACTC
61840137 TAG
1 TAG
61840140 TTCAAAACCA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.37, C:0.16, G:0.25, T:0.22
Consensus pattern (24 bp):
TAGAAATAGAGGAACTCGACACTC
Found at i:61845316 original size:15 final size:15
Alignment explanation
Indices: 61845275--61845316 Score: 50
Period size: 15 Copynumber: 2.8 Consensus size: 15
61845265 GAAATGATGT
61845275 TACATGATATATAGA
1 TACATGATATATAGA
* *
61845290 TATATGAAATATATGA
1 TACATGATATATA-GA
61845306 TACAT-ATATAT
1 TACATGATATAT
61845317 GGAATTTGAT
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
15 16 0.73
16 6 0.27
ACGTcount: A:0.48, C:0.05, G:0.10, T:0.38
Consensus pattern (15 bp):
TACATGATATATAGA
Found at i:61845931 original size:10 final size:10
Alignment explanation
Indices: 61845916--61845947 Score: 55
Period size: 10 Copynumber: 3.2 Consensus size: 10
61845906 TTATGTGATT
61845916 ATTTGGTATG
1 ATTTGGTATG
61845926 ATTTGGTATG
1 ATTTGGTATG
*
61845936 TTTTGGTATG
1 ATTTGGTATG
61845946 AT
1 AT
61845948 AACCAAATGT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.19, C:0.00, G:0.28, T:0.53
Consensus pattern (10 bp):
ATTTGGTATG
Found at i:61848476 original size:4 final size:4
Alignment explanation
Indices: 61848467--61848504 Score: 51
Period size: 4 Copynumber: 9.5 Consensus size: 4
61848457 TAATCGTGCC
*
61848467 TTCT TTCT TTCT TTCT TTCT TT-T TTAT TTCAT TTCT TT
1 TTCT TTCT TTCT TTCT TTCT TTCT TTCT TTC-T TTCT TT
61848505 ATTATTTTAT
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
3 3 0.10
4 24 0.77
5 4 0.13
ACGTcount: A:0.05, C:0.18, G:0.00, T:0.76
Consensus pattern (4 bp):
TTCT
Found at i:61848488 original size:16 final size:16
Alignment explanation
Indices: 61848467--61848511 Score: 56
Period size: 16 Copynumber: 2.8 Consensus size: 16
61848457 TAATCGTGCC
*
61848467 TTCTTTCTTTCTTTC-T
1 TTCTTT-TTTATTTCAT
61848483 TTCTTTTTTATTTCAT
1 TTCTTTTTTATTTCAT
*
61848499 TTCTTTATTATTT
1 TTCTTTTTTATTT
61848512 TATTATATTA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
15 7 0.27
16 19 0.73
ACGTcount: A:0.09, C:0.16, G:0.00, T:0.76
Consensus pattern (16 bp):
TTCTTTTTTATTTCAT
Found at i:61848538 original size:8 final size:8
Alignment explanation
Indices: 61848503--61848548 Score: 58
Period size: 8 Copynumber: 5.8 Consensus size: 8
61848493 TTTCATTTCT
*
61848503 TTATTATT
1 TTATTATA
61848511 TTATTATA
1 TTATTATA
61848519 TTATTA-A
1 TTATTATA
*
61848526 CTATTATA
1 TTATTATA
61848534 TTATTATAA
1 TTATTAT-A
61848543 TTATTA
1 TTATTA
61848549 ATTTCTTAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
7 6 0.18
8 20 0.61
9 7 0.21
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.61
Consensus pattern (8 bp):
TTATTATA
Found at i:61854162 original size:17 final size:17
Alignment explanation
Indices: 61854121--61854162 Score: 75
Period size: 17 Copynumber: 2.5 Consensus size: 17
61854111 TTAAATTGGT
*
61854121 TTTGAAAGCTTCCGCGA
1 TTTGAAATCTTCCGCGA
61854138 TTTGAAATCTTCCGCGA
1 TTTGAAATCTTCCGCGA
61854155 TTTGAAAT
1 TTTGAAAT
61854163 ATGACTCTAG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.36
Consensus pattern (17 bp):
TTTGAAATCTTCCGCGA
Found at i:61855616 original size:18 final size:20
Alignment explanation
Indices: 61855593--61855632 Score: 57
Period size: 19 Copynumber: 2.1 Consensus size: 20
61855583 TTATTAGAAA
61855593 TTGTAA-CTATTTTAA-GCT
1 TTGTAATCTATTTTAAGGCT
*
61855611 TTGTAATGTATTTTAAGGCT
1 TTGTAATCTATTTTAAGGCT
61855631 TT
1 TT
61855633 TTTACCTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 6 0.32
19 8 0.42
20 5 0.26
ACGTcount: A:0.25, C:0.07, G:0.15, T:0.53
Consensus pattern (20 bp):
TTGTAATCTATTTTAAGGCT
Found at i:61856670 original size:15 final size:15
Alignment explanation
Indices: 61856652--61856681 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
61856642 ATTGTTATTT
*
61856652 TTACTATTATTTTAA
1 TTACAATTATTTTAA
61856667 TTACAATTATTTTAA
1 TTACAATTATTTTAA
61856682 ACTTTAAACT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.37, C:0.07, G:0.00, T:0.57
Consensus pattern (15 bp):
TTACAATTATTTTAA
Found at i:61857066 original size:26 final size:25
Alignment explanation
Indices: 61857014--61857064 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
61857004 ATAAACTTAG
61857014 ACAAAAAAATAAAATTTATTTAAAA
1 ACAAAAAAATAAAATTTATTTAAAA
61857039 ACAAAAAAATAAAATTTATTTAAAA
1 ACAAAAAAATAAAATTTATTTAAAA
61857064 A
1 A
61857065 ACGAGTTAAG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.69, C:0.04, G:0.00, T:0.27
Consensus pattern (25 bp):
ACAAAAAAATAAAATTTATTTAAAA
Found at i:61857274 original size:29 final size:30
Alignment explanation
Indices: 61857241--61857302 Score: 108
Period size: 29 Copynumber: 2.1 Consensus size: 30
61857231 ACTTATTTTA
*
61857241 TTATTAATTTTATTATTA-TTTAAAGATAT
1 TTATTAATTTTATTATTATTTTAAAAATAT
61857270 TTATTAATTTTATTATTATTTTAAAAATAT
1 TTATTAATTTTATTATTATTTTAAAAATAT
61857300 TTA
1 TTA
61857303 CCTATTAATT
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
29 18 0.58
30 13 0.42
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.60
Consensus pattern (30 bp):
TTATTAATTTTATTATTATTTTAAAAATAT
Found at i:61857330 original size:22 final size:21
Alignment explanation
Indices: 61857278--61857341 Score: 58
Period size: 22 Copynumber: 3.0 Consensus size: 21
61857268 ATTTATTAAT
* *
61857278 TTTATTATTATTTTAAAAATA
1 TTTATTATTAATTTAAATATA
* *
61857299 TTTACCTATTAATTTACATATA
1 TTTA-TTATTAATTTAAATATA
*
61857321 TCTTATTATT-ATTTATATATA
1 T-TTATTATTAATTTAAATATA
61857342 CATAATTTTT
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
21 14 0.40
22 18 0.51
23 3 0.09
ACGTcount: A:0.38, C:0.06, G:0.00, T:0.56
Consensus pattern (21 bp):
TTTATTATTAATTTAAATATA
Found at i:61857402 original size:9 final size:9
Alignment explanation
Indices: 61857385--61857431 Score: 51
Period size: 9 Copynumber: 5.1 Consensus size: 9
61857375 CAAATATTTA
*
61857385 TTTTGATAT
1 TTTTAATAT
61857394 TTTTAATAT
1 TTTTAATAT
61857403 TTTTAAT-T
1 TTTTAATAT
*
61857411 TATTATATATT
1 TTTTA-ATA-T
61857422 TTTTAATAT
1 TTTTAATAT
61857431 T
1 T
61857432 ATATAAAAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 6
0.78 0.07 0.15
Matches are distributed among these distances:
8 5 0.16
9 19 0.59
10 3 0.09
11 5 0.16
ACGTcount: A:0.30, C:0.00, G:0.02, T:0.68
Consensus pattern (9 bp):
TTTTAATAT
Found at i:61857405 original size:17 final size:18
Alignment explanation
Indices: 61857383--61857423 Score: 50
Period size: 17 Copynumber: 2.3 Consensus size: 18
61857373 GACAAATATT
61857383 TATTTTGATATTT-TTA-A
1 TATTTTGA-ATTTATTATA
*
61857400 TATTTTTAATTTATTATA
1 TATTTTGAATTTATTATA
61857418 TATTTT
1 TATTTT
61857424 TTAATATTAT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
16 4 0.19
17 10 0.48
18 7 0.33
ACGTcount: A:0.29, C:0.00, G:0.02, T:0.68
Consensus pattern (18 bp):
TATTTTGAATTTATTATA
Found at i:61857406 original size:18 final size:18
Alignment explanation
Indices: 61857399--61857436 Score: 53
Period size: 17 Copynumber: 2.2 Consensus size: 18
61857389 GATATTTTTA
61857399 ATATTTTTAATTTATTAT
1 ATATTTTTAATTTATTAT
61857417 ATATTTTTTAA--TATTAT
1 ATA-TTTTTAATTTATTAT
61857434 ATA
1 ATA
61857437 AAAAAATAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 9 0.47
18 3 0.16
19 7 0.37
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (18 bp):
ATATTTTTAATTTATTAT
Found at i:61858556 original size:21 final size:23
Alignment explanation
Indices: 61858516--61858559 Score: 65
Period size: 21 Copynumber: 2.0 Consensus size: 23
61858506 CTTTTATTAT
61858516 TTTTATAAATAAATAATATTTTA
1 TTTTATAAATAAATAATATTTTA
*
61858539 TTTTAT-AATTAA-AATATTTTA
1 TTTTATAAATAAATAATATTTTA
61858560 AAATTTTAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 9 0.45
22 5 0.25
23 6 0.30
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (23 bp):
TTTTATAAATAAATAATATTTTA
Found at i:61861194 original size:17 final size:16
Alignment explanation
Indices: 61861156--61861200 Score: 54
Period size: 17 Copynumber: 2.6 Consensus size: 16
61861146 GGGATTAATG
*
61861156 TAAATAATAATATTAAGT
1 TAAAT-ATAA-ATTAAGA
61861174 TAAATATAAATTAAGAA
1 TAAATATAAATTAAG-A
61861191 TAAATATAAA
1 TAAATATAAA
61861201 ATTGTAGGGA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
16 6 0.24
17 14 0.56
18 5 0.20
ACGTcount: A:0.62, C:0.00, G:0.04, T:0.33
Consensus pattern (16 bp):
TAAATATAAATTAAGA
Found at i:61862567 original size:27 final size:27
Alignment explanation
Indices: 61862519--61862677 Score: 148
Period size: 27 Copynumber: 5.9 Consensus size: 27
61862509 GTGAGGCTGC
* *
61862519 CAGATATTGTGAC-GAAGTCACCAGATA
1 CAGATATTGTGGCAG-AGCCACCAGATA
*
61862546 CATATATTGTGGCAGAGCCACCAGA-A
1 CAGATATTGTGGCAGAGCCACCAGATA
*
61862572 CAGATACATGTGGCAGAGCCACCAGAT-
1 CAGATA-TTGTGGCAGAGCCACCAGATA
* * *
61862599 CAGATAATAGTGGCATAGCCACCAG-GA
1 CAGAT-ATTGTGGCAGAGCCACCAGATA
61862626 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
* *
61862653 TAGATAAATTGTGGCATAGCCACCA
1 CAGAT--ATTGTGGCAGAGCCACCA
61862678 AGGCGCTTCC
Statistics
Matches: 109, Mismatches: 14, Indels: 17
0.78 0.10 0.12
Matches are distributed among these distances:
26 8 0.07
27 82 0.75
28 17 0.16
29 2 0.02
ACGTcount: A:0.35, C:0.22, G:0.24, T:0.19
Consensus pattern (27 bp):
CAGATATTGTGGCAGAGCCACCAGATA
Found at i:61862612 original size:54 final size:53
Alignment explanation
Indices: 61862537--61862677 Score: 201
Period size: 54 Copynumber: 2.6 Consensus size: 53
61862527 GTGACGAAGT
* *
61862537 CACCAGATACATATATTGTGGCAGAGCCACCAGAACAGATACATGTGGCAGAGC
1 CACCAGATAGATA-ATTGTGGCATAGCCACCAGAACAGATACATGTGGCAGAGC
* * *
61862591 CACCAGATCAGATAATAGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
1 CACCAGAT-AGATAATTGTGGCATAGCCACCAGAACAGATACATGTGGCAGAGC
61862645 CACCAGATTAGATAAATTGTGGCATAGCCACCA
1 CACCAGA-TAGAT-AATTGTGGCATAGCCACCA
61862678 AGGCGCTTCC
Statistics
Matches: 78, Mismatches: 6, Indels: 5
0.88 0.07 0.06
Matches are distributed among these distances:
54 55 0.71
55 23 0.29
ACGTcount: A:0.35, C:0.23, G:0.23, T:0.18
Consensus pattern (53 bp):
CACCAGATAGATAATTGTGGCATAGCCACCAGAACAGATACATGTGGCAGAGC
Found at i:61870568 original size:27 final size:27
Alignment explanation
Indices: 61870520--61870679 Score: 141
Period size: 27 Copynumber: 5.9 Consensus size: 27
61870510 GTGAGGCTGC
* *
61870520 CAGATATTGTGAC-GAAGTCACCAAATA
1 CAGATATTGTGGCAG-AGCCACCAAATA
*
61870547 CAGATATTGTGGCAGAGCCACCAGA-A
1 CAGATATTGTGGCAGAGCCACCAAATA
61870573 CAGATATATGTGGCAGAGCCACCAAAT-
1 CAGATAT-TGTGGCAGAGCCACCAAATA
* * **
61870600 CAAATAATTGTGGCATAGCCACC-AGGA
1 CAGAT-ATTGTGGCAGAGCCACCAAATA
*
61870627 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAAATA
* *
61870654 TAGATAAATTGTGGCATAGCCACCAA
1 CAGAT--ATTGTGGCAGAGCCACCAA
61870680 GGCGCTTCCT
Statistics
Matches: 108, Mismatches: 16, Indels: 17
0.77 0.11 0.12
Matches are distributed among these distances:
26 11 0.10
27 77 0.71
28 18 0.17
29 2 0.02
ACGTcount: A:0.37, C:0.21, G:0.23, T:0.19
Consensus pattern (27 bp):
CAGATATTGTGGCAGAGCCACCAAATA
Found at i:61870610 original size:54 final size:54
Alignment explanation
Indices: 61870538--61870678 Score: 212
Period size: 54 Copynumber: 2.6 Consensus size: 54
61870528 GTGACGAAGT
*
61870538 CACCAAATACAGAT-ATTGTGGCAGAGCCACCAGAACAGATATATGTGGCAGAGC
1 CACCAAAT-CAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
* *
61870592 CACCAAATCAAATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
1 CACCAAATCAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
* *
61870646 CACCAGATTAGATAAATTGTGGCATAGCCACCA
1 CACCAAATCAGAT-AATTGTGGCATAGCCACCA
61870679 AGGCGCTTCC
Statistics
Matches: 79, Mismatches: 6, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
53 4 0.05
54 56 0.71
55 19 0.24
ACGTcount: A:0.37, C:0.23, G:0.22, T:0.18
Consensus pattern (54 bp):
CACCAAATCAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
Found at i:61872725 original size:41 final size:41
Alignment explanation
Indices: 61872680--61872848 Score: 139
Period size: 41 Copynumber: 4.1 Consensus size: 41
61872670 GCACAAACAT
* *
61872680 CCTTCGGAA-TCAAGCCCGATTCTTAGCACTGGCTCAAAAGC
1 CCTTCGGAACT-AAGCCCGATTATGAGCACTGGCTCAAAAGC
* * * * *
61872721 CCTTC-GAGACCAAGCTCGGATTA-GACCACTGGCTCGAAGGC
1 CCTTCGGA-ACTAAGC-CCGATTATGAGCACTGGCTCAAAAGC
* * **
61872762 CCTTCGGAACTAAGTCCGGTTATGA-CACTGGCTTTAAAGC
1 CCTTCGGAACTAAGCCCGATTATGAGCACTGGCTCAAAAGC
* ** * *
61872802 CCTTCGAAACTAAGTTCGGTTATTAGCACTGGCTCAAAAGC
1 CCTTCGGAACTAAGCCCGATTATGAGCACTGGCTCAAAAGC
61872843 CCTTCG
1 CCTTCG
61872849 AGACCAAGCT
Statistics
Matches: 103, Mismatches: 19, Indels: 12
0.77 0.14 0.09
Matches are distributed among these distances:
40 41 0.40
41 55 0.53
42 7 0.07
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.24
Consensus pattern (41 bp):
CCTTCGGAACTAAGCCCGATTATGAGCACTGGCTCAAAAGC
Found at i:61872849 original size:41 final size:41
Alignment explanation
Indices: 61872702--61872849 Score: 167
Period size: 41 Copynumber: 3.6 Consensus size: 41
61872692 AGCCCGATTC
* * *
61872702 TTAGCACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGG--A
1 TTAGCACTGGCTCAAAAGCCCTTCGAAACTAAGTTCGGTTA
* * * *
61872741 TTAGACCACTGGCTCGAAGGCCCTTCGGAACTAAGTCCGGTTA
1 TTAG--CACTGGCTCAAAAGCCCTTCGAAACTAAGTTCGGTTA
* **
61872784 TGA-CACTGGCTTTAAAGCCCTTCGAAACTAAGTTCGGTTA
1 TTAGCACTGGCTCAAAAGCCCTTCGAAACTAAGTTCGGTTA
61872824 TTAGCACTGGCTCAAAAGCCCTTCGA
1 TTAGCACTGGCTCAAAAGCCCTTCGA
61872850 GACCAAGCTC
Statistics
Matches: 88, Mismatches: 16, Indels: 8
0.79 0.14 0.07
Matches are distributed among these distances:
39 4 0.05
40 34 0.39
41 47 0.53
43 3 0.03
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (41 bp):
TTAGCACTGGCTCAAAAGCCCTTCGAAACTAAGTTCGGTTA
Found at i:61876496 original size:17 final size:17
Alignment explanation
Indices: 61876441--61876500 Score: 61
Period size: 17 Copynumber: 3.4 Consensus size: 17
61876431 TGGCATCATT
61876441 AATAATTCAATTTTAATATA
1 AATAATTCAA--TT-ATATA
61876461 AAT-ATTCAA-TATGACTA
1 AATAATTCAATTAT-A-TA
61876478 AATAATTCAATTATATA
1 AATAATTCAATTATATA
61876495 AATAAT
1 AATAAT
61876501 ATAAAATGTG
Statistics
Matches: 36, Mismatches: 0, Indels: 11
0.77 0.00 0.23
Matches are distributed among these distances:
15 2 0.06
16 2 0.06
17 13 0.36
18 7 0.19
19 9 0.25
20 3 0.08
ACGTcount: A:0.52, C:0.07, G:0.02, T:0.40
Consensus pattern (17 bp):
AATAATTCAATTATATA
Found at i:61877377 original size:17 final size:16
Alignment explanation
Indices: 61877342--61877371 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
61877332 TATGAGTCAT
61877342 ATTTATATTTTAATAA
1 ATTTATATTTTAATAA
61877358 ATTTA-ATTTTAATA
1 ATTTATATTTTAATA
61877372 TAAATTCTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (16 bp):
ATTTATATTTTAATAA
Found at i:61880252 original size:53 final size:53
Alignment explanation
Indices: 61880188--61880290 Score: 188
Period size: 53 Copynumber: 1.9 Consensus size: 53
61880178 TGTTATAATT
61880188 GTTGCAAATTGTGTTTAATTTTACTAAAATATATTTCATTCATATAGTTTACA
1 GTTGCAAATTGTGTTTAATTTTACTAAAATATATTTCATTCATATAGTTTACA
* *
61880241 GTTGCAAATTGTGTTTCATTTTGCTAAAATATATTTCATTCATATAGTTT
1 GTTGCAAATTGTGTTTAATTTTACTAAAATATATTTCATTCATATAGTTT
61880291 GCATACTTAG
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
53 48 1.00
ACGTcount: A:0.31, C:0.10, G:0.11, T:0.49
Consensus pattern (53 bp):
GTTGCAAATTGTGTTTAATTTTACTAAAATATATTTCATTCATATAGTTTACA
Found at i:61887168 original size:48 final size:47
Alignment explanation
Indices: 61887022--61887197 Score: 177
Period size: 48 Copynumber: 3.8 Consensus size: 47
61887012 TTATGAGAGC
* * *
61887022 CAGTGTAAGACCATGTCTAGGACATGGCATCGGCA-TTGAGACGA-GAA
1 CAGTGTAAGACCATGTCTAGGACATGGCATCGGCACGTAAGA-GATG-T
* *
61887069 CTAGTGTAAGA-CATGTTTGGGACAT-GCATCGGCTACG--AGATG-TGT
1 C-AGTGTAAGACCATGTCTAGGACATGGCATCGGC-ACGTAAGA-GATGT
*
61887114 CAGTGTAAGACCATGCCTAGGACATGGCATCGGCACGTATAGAGATGT
1 CAGTGTAAGACCATGTCTAGGACATGGCATCGGCACGTA-AGAGATGT
* *
61887162 CAGTGTAAGACCATGTCTGGGACATGGCATTGGCAC
1 CAGTGTAAGACCATGTCTAGGACATGGCATCGGCAC
61887198 TGATATGTGA
Statistics
Matches: 108, Mismatches: 11, Indels: 19
0.78 0.08 0.14
Matches are distributed among these distances:
44 9 0.08
45 15 0.14
46 21 0.19
47 15 0.14
48 48 0.44
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.23
Consensus pattern (47 bp):
CAGTGTAAGACCATGTCTAGGACATGGCATCGGCACGTAAGAGATGT
Found at i:61887277 original size:48 final size:47
Alignment explanation
Indices: 61887019--61887338 Score: 172
Period size: 48 Copynumber: 6.7 Consensus size: 47
61887009 ACATTATGAG
* * * * * * *
61887019 AGCCAGTGTAAGACCATGTCTAGGACATGGCATCGGCATTGAGACGAGA
1 AGCCAGTGTAAGACCATGTTTGGGACATGGCATCGAC-CTCA-TCGATA
* * *
61887068 A-CTAGTGTAAGA-CATGTTTGGGACAT-GCATCG-GCT-A-CGAGATG
1 AGCCAGTGTAAGACCATGTTTGGGACATGGCATCGACCTCATC--GATA
* * ** * * * *
61887111 TGTCAGTGTAAGACCATGCCTAGGACATGGCATCGGCACGT-ATAGAGA
1 AGCCAGTGTAAGACCATGTTTGGGACATGGCATC-G-ACCTCATCGATA
* * * * * * *
61887159 TGTCAGTGTAAGACCATGTCTGGGACATGGCATTGGCACTGATATG-TGA
1 AGCCAGTGTAAGACCATGTTTGGGACATGGCATCGAC-CTCAT-CGAT-A
* *
61887208 GAGCTAGTGTAAGACCATGTTTGGGACATGGCGTCGACCTCATTTCGATA
1 -AGCCAGTGTAAGACCATGTTTGGGACATGGCATCGACCTCA--TCGATA
* * * *
61887258 A-TCAGTGTAAGACCATGTTTGGGACATGGCATCGACTTGATGGATA
1 AGCCAGTGTAAGACCATGTTTGGGACATGGCATCGACCTCATCGATA
* *
61887304 AGCCAGAGTAAGACCATGTTTGGAACATGGCATCG
1 AGCCAGTGTAAGACCATGTTTGGGACATGGCATCG
61887339 GCATTATACC
Statistics
Matches: 210, Mismatches: 43, Indels: 38
0.72 0.15 0.13
Matches are distributed among these distances:
41 1 0.00
43 3 0.01
44 10 0.05
45 11 0.05
46 18 0.09
47 45 0.21
48 79 0.38
49 9 0.04
50 32 0.15
51 2 0.01
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.24
Consensus pattern (47 bp):
AGCCAGTGTAAGACCATGTTTGGGACATGGCATCGACCTCATCGATA
Found at i:61894475 original size:48 final size:48
Alignment explanation
Indices: 61894373--61894600 Score: 181
Period size: 48 Copynumber: 4.8 Consensus size: 48
61894363 TTATTTGTGT
* * * *
61894373 GCTAGTGTAAGA-CATGTCTAGGACAT-GCATTAGCCACAT-TA-TGAGA
1 GCTAGTGTAAGACCATGTTTGGGACATGGCA-TCG-CACATATAGAGAGA
*
61894419 GCCAGTGTAAGACCATGTTTGGGACATGGCATCG-ACAT-TGAGACGAGA
1 GCTAGTGTAAGACCATGTTTGGGACATGGCATCGCACATAT-AGA-GAGA
* *
61894467 GCTAGTGTAAGA-CATGTTTGGGACATGGCATCGGCACGTATAGAG-GT
1 GCTAGTGTAAGACCATGTTTGGGACATGGCATC-GCACATATAGAGAGA
* * *
61894514 G-TCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACGTATAGAG-GT
1 GCT-AGTGTAAGACCATGTTTGGGACATGGCATC-GCACATATAGAGAGA
* **
61894562 G-TCAGTGTAAGACAATGTCGGGGACATGGCATCAGCACA
1 GCT-AGTGTAAGACCATGTTTGGGACATGGCATC-GCACA
61894601 GATATGTGAG
Statistics
Matches: 159, Mismatches: 13, Indels: 18
0.84 0.07 0.09
Matches are distributed among these distances:
45 5 0.03
46 13 0.08
47 45 0.28
48 89 0.56
49 6 0.04
50 1 0.01
ACGTcount: A:0.29, C:0.18, G:0.31, T:0.23
Consensus pattern (48 bp):
GCTAGTGTAAGACCATGTTTGGGACATGGCATCGCACATATAGAGAGA
Found at i:61894569 original size:95 final size:96
Alignment explanation
Indices: 61894421--61894599 Score: 233
Period size: 95 Copynumber: 1.9 Consensus size: 96
61894411 TTATGAGAGC
* *
61894421 CAGTGTAAGACCATGTTTGGGACATGGCATCGACATTGAGACGAGAGCTAGTGTAAGAC-ATGTT
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGACATTGAGACGAGAGCTAGTGTAAGACAATGTC
* *
61894485 TGGGACATGGCATCGGCACGTATAGAGGTGT
66 GGGGACATGGCATCAGCACGTATAGAGGTGT
* *
61894516 CAGTGTAAGACCATGTCTGGGACATGGCATCGGCACGTAT-AGA-G-GTG-TCAGTGTAAGACAA
1 CAGTGTAAGACCATGTCTGGGACATGGCATC-G-ACAT-TGAGACGAGAGCT-AGTGTAAGACAA
61894577 TGTCGGGGACATGGCATCAGCAC
62 TGTCGGGGACATGGCATCAGCAC
61894600 AGATATGTGA
Statistics
Matches: 73, Mismatches: 6, Indels: 9
0.83 0.07 0.10
Matches are distributed among these distances:
94 1 0.01
95 42 0.58
96 23 0.32
97 6 0.08
98 1 0.01
ACGTcount: A:0.27, C:0.18, G:0.32, T:0.22
Consensus pattern (96 bp):
CAGTGTAAGACCATGTCTGGGACATGGCATCGACATTGAGACGAGAGCTAGTGTAAGACAATGTC
GGGGACATGGCATCAGCACGTATAGAGGTGT
Found at i:61894713 original size:47 final size:47
Alignment explanation
Indices: 61894644--61894807 Score: 312
Period size: 47 Copynumber: 3.5 Consensus size: 47
61894634 GTCAATGTAT
*
61894644 GACCATGTTTGGGACATGGCATCGACTTGATGGATGAGCCAGAGTAA
1 GACCATGTCTGGGACATGGCATCGACTTGATGGATGAGCCAGAGTAA
61894691 GACCATGTCTGGGACATGGCATCGACTTGATGGATGAGCCAGAGTAA
1 GACCATGTCTGGGACATGGCATCGACTTGATGGATGAGCCAGAGTAA
61894738 GACCATGTCTGGGACATGGCATCGACTTGATGGATGAGCCAGAGTAA
1 GACCATGTCTGGGACATGGCATCGACTTGATGGATGAGCCAGAGTAA
61894785 GACCATGTCTGGGACATGG-ATCG
1 GACCATGTCTGGGACATGGCATCG
61894808 GCATTATACC
Statistics
Matches: 116, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
46 4 0.03
47 112 0.97
ACGTcount: A:0.27, C:0.19, G:0.32, T:0.22
Consensus pattern (47 bp):
GACCATGTCTGGGACATGGCATCGACTTGATGGATGAGCCAGAGTAA
Found at i:61896570 original size:46 final size:46
Alignment explanation
Indices: 61896503--61896674 Score: 199
Period size: 46 Copynumber: 3.7 Consensus size: 46
61896493 AACCCGCCCC
*
61896503 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTCGCATCCA
* *
61896549 TAAGTGAACTCAGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C-A-TTCGCATCCA
* * * *
61896597 TCA-CGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTCGCATCCA
*
61896642 TAGGTGAACTCGGACTCAACTCAACGAGTTCGG
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG
61896675 ATGCTCAACC
Statistics
Matches: 104, Mismatches: 13, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 1 0.01
46 58 0.56
47 26 0.25
48 3 0.03
49 2 0.02
50 4 0.04
51 2 0.02
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTCGCATCCA
Found at i:61896615 original size:93 final size:93
Alignment explanation
Indices: 61896508--61896678 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
61896498 GCCCCTAAGT
* *
61896508 GAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
61896573 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * *
61896601 GAACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCATAGGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
61896666 CGAGTTCGGATGC
66 CGAGTTCGGATGC
61896679 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:61897132 original size:30 final size:30
Alignment explanation
Indices: 61897098--61897157 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
61897088 ATTTAATACG
*
61897098 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTACCCCTA
* * *
61897128 AACTTTTGCATAATTACACTTTTACCCCTA
1 AACTTTGGAAAAATTACACTTTTACCCCTA
61897158 GGCTCGCGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.32, C:0.25, G:0.07, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTACCCCTA
Found at i:61908184 original size:17 final size:17
Alignment explanation
Indices: 61908159--61908200 Score: 75
Period size: 17 Copynumber: 2.5 Consensus size: 17
61908149 TTAAAATTAA
*
61908159 ATAAGAATGGTTATTTT
1 ATAAAAATGGTTATTTT
61908176 ATAAAAATGGTTATTTT
1 ATAAAAATGGTTATTTT
61908193 ATAAAAAT
1 ATAAAAAT
61908201 AAAATTAATT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 24 1.00
ACGTcount: A:0.45, C:0.00, G:0.12, T:0.43
Consensus pattern (17 bp):
ATAAAAATGGTTATTTT
Found at i:61913995 original size:17 final size:18
Alignment explanation
Indices: 61913962--61913996 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
61913952 AATCATTATA
61913962 CAATTCATCAATCAATTC
1 CAATTCATCAATCAATTC
*
61913980 CAATTC-TCATTCAATTC
1 CAATTCATCAATCAATTC
61913997 AAATATCACT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 10 0.62
18 6 0.38
ACGTcount: A:0.34, C:0.29, G:0.00, T:0.37
Consensus pattern (18 bp):
CAATTCATCAATCAATTC
Found at i:61914736 original size:25 final size:26
Alignment explanation
Indices: 61914708--61914765 Score: 75
Period size: 25 Copynumber: 2.3 Consensus size: 26
61914698 CTTATTTCAT
*
61914708 TAAATAAAAAAT-TTTAAAAATATAA
1 TAAATAAAAAATATTTAAAAACATAA
* *
61914733 TAAATCAAATATATTTAAAAACATAA
1 TAAATAAAAAATATTTAAAAACATAA
61914759 -AAATAAA
1 TAAATAAA
61914766 TATTAAGACA
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
25 16 0.57
26 12 0.43
ACGTcount: A:0.67, C:0.03, G:0.00, T:0.29
Consensus pattern (26 bp):
TAAATAAAAAATATTTAAAAACATAA
Found at i:61914751 original size:26 final size:24
Alignment explanation
Indices: 61914720--61914768 Score: 71
Period size: 26 Copynumber: 2.0 Consensus size: 24
61914710 AATAAAAAAT
*
61914720 TTTAAAAATATAATAAATCAAATATA
1 TTTAAAAACATAA-AAAT-AAATATA
61914746 TTTAAAAACATAAAAATAAATAT
1 TTTAAAAACATAAAAATAAATAT
61914769 TAAGACAAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 6 0.27
25 4 0.18
26 12 0.55
ACGTcount: A:0.63, C:0.04, G:0.00, T:0.33
Consensus pattern (24 bp):
TTTAAAAACATAAAAATAAATATA
Found at i:61914788 original size:21 final size:22
Alignment explanation
Indices: 61914755--61914797 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
61914745 ATTTAAAAAC
* *
61914755 ATAAAAATAAATATTAAGACAA
1 ATAAAAATAAATACTAAAACAA
61914777 ATAAAAAT-AATACTAAAACAA
1 ATAAAAATAAATACTAAAACAA
61914798 TTCTTAAAAC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 11 0.58
22 8 0.42
ACGTcount: A:0.70, C:0.07, G:0.02, T:0.21
Consensus pattern (22 bp):
ATAAAAATAAATACTAAAACAA
Found at i:61918777 original size:19 final size:20
Alignment explanation
Indices: 61918753--61918801 Score: 57
Period size: 19 Copynumber: 2.5 Consensus size: 20
61918743 ACTAAAATGT
61918753 AAAATTGTGAAAATTGAT-G
1 AAAATTGTGAAAATTGATAG
* *
61918772 AAAATTCT-AAAATTTATAG
1 AAAATTGTGAAAATTGATAG
61918791 AAAATATGTGA
1 AAAAT-TGTGA
61918802 TGTAAATTTT
Statistics
Matches: 24, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
18 8 0.33
19 13 0.54
20 2 0.08
21 1 0.04
ACGTcount: A:0.51, C:0.02, G:0.14, T:0.33
Consensus pattern (20 bp):
AAAATTGTGAAAATTGATAG
Found at i:61954583 original size:40 final size:40
Alignment explanation
Indices: 61954505--61954724 Score: 259
Period size: 40 Copynumber: 5.5 Consensus size: 40
61954495 ACCCAAGTAT
* *
61954505 CTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* * **
61954544 CTTCGGGTCTTAGCCCAGATATAGTCACTAGCATGAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
*
61954584 CTTCGGGACTTAGCCCGAATATAGTCACTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
*
61954624 CTTC-GGACTTAGCCCGGGTATAG-CAACTACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTA---GCACAAATGC
* * *
61954666 TTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
*
61954706 CTTCAGGACTTAGCCCGGA
1 CTTCGGGACTTAGCCCGGA
61954725 CATCATCCGA
Statistics
Matches: 154, Mismatches: 19, Indels: 15
0.82 0.10 0.08
Matches are distributed among these distances:
38 1 0.01
39 32 0.21
40 86 0.56
41 1 0.01
42 13 0.08
43 21 0.14
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:61954688 original size:82 final size:80
Alignment explanation
Indices: 61954505--61954724 Score: 259
Period size: 82 Copynumber: 2.7 Consensus size: 80
61954495 ACCCAAGTAT
* * * * *
61954505 CTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATGCCTTCGGGTCTTAGCCCAGATATAG
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGCCTTCAGGACTTAGCCCGGATATAG
**
61954568 TCACTAGCATGAATGC
65 TCACTAGCACAAATGC
* *
61954584 CTTCGGGACTTAGCCCGAATATAGTCACTAGCACAAATGCCTTC-GGACTTAGCCCGGGTATAG-
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCAGGACTTAGCCCGGATATAGT
61954647 CAACTACTCGCACAAATGC
66 C-ACTA---GCACAAATGC
* * *
61954666 TTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGCCTTCAGGACTTAGCCCGGA
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCAGGACTTAGCCCGGA
61954725 CATCATCCGA
Statistics
Matches: 121, Mismatches: 13, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 32 0.26
80 26 0.21
81 1 0.01
82 48 0.40
83 13 0.11
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCAGGACTTAGCCCGGATATAGT
CACTAGCACAAATGC
Found at i:61958915 original size:48 final size:48
Alignment explanation
Indices: 61958599--61958913 Score: 420
Period size: 48 Copynumber: 6.6 Consensus size: 48
61958589 AAATGTGCAT
* * * *
61958599 GTGTAAGAACATGTCTGGGA-TTGGCATTGGCGATGATATGTGTGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGACGATGATATGTGTGCCA
*
61958646 GTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATGTGTGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGACGATGATATGTGTGCCA
* *
61958694 GTGTAAGACCATGTTTGGGACATGCCATCGACGATGATATGTGTGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGACGATGATATGTGTGCCA
* * * *
61958742 GTGTAAGACCATGTCTGGGGCATGACATCAACGATGATATGTGTACCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGACGATGATATGTGTGCCA
* * *
61958790 GTGTAAGACCATGTCTAGGACATAGCATCG-GGAATGATATGTGTGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGACG-ATGATATGTGTGCCA
* * *
61958838 GTGTAAGACCATGTCTGGGACATGGCATTGACGATGATATGTGGAGTC-
1 GTGTAAGACCATGTCTGGGACATGGCATCGACGATGATATGT-GTGCCA
* *
61958886 TTGTAAGACCATGTCGGGGACATGGCAT
1 GTGTAAGACCATGTCTGGGACATGGCAT
61958914 TGGTACTTTA
Statistics
Matches: 238, Mismatches: 26, Indels: 7
0.88 0.10 0.03
Matches are distributed among these distances:
47 20 0.08
48 214 0.90
49 4 0.02
ACGTcount: A:0.26, C:0.17, G:0.31, T:0.26
Consensus pattern (48 bp):
GTGTAAGACCATGTCTGGGACATGGCATCGACGATGATATGTGTGCCA
Found at i:61960973 original size:25 final size:25
Alignment explanation
Indices: 61960907--61960973 Score: 73
Period size: 24 Copynumber: 2.6 Consensus size: 25
61960897 ATATATTACC
* *
61960907 TTATATGTTGGCTTATTTTGGAATGG
1 TTATAAGTTGG-TTATTTTGGAATAG
*
61960933 TTATGAGTTGGTTATTTTGG-ATAG
1 TTATAAGTTGGTTATTTTGGAATAG
*
61960957 TTGTAAGTTGGTGTATT
1 TTATAAGTTGGT-TATT
61960974 AACACTTTAG
Statistics
Matches: 35, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
24 13 0.37
25 13 0.37
26 9 0.26
ACGTcount: A:0.19, C:0.01, G:0.28, T:0.51
Consensus pattern (25 bp):
TTATAAGTTGGTTATTTTGGAATAG
Found at i:61962634 original size:28 final size:29
Alignment explanation
Indices: 61962603--61962662 Score: 70
Period size: 29 Copynumber: 2.1 Consensus size: 29
61962593 GATTTTTGAC
*
61962603 AAAAATGTCAAA-T-AGGGATTAAATTGTG
1 AAAAATGT-AAATTGAGGGATTAAATTATG
* *
61962631 AAAAGTGTAAATTGAGGGGTTAAATTATG
1 AAAAATGTAAATTGAGGGATTAAATTATG
61962660 AAA
1 AAA
61962663 TAAATGTGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
27 3 0.11
28 8 0.30
29 16 0.59
ACGTcount: A:0.47, C:0.02, G:0.23, T:0.28
Consensus pattern (29 bp):
AAAAATGTAAATTGAGGGATTAAATTATG
Found at i:61974809 original size:38 final size:38
Alignment explanation
Indices: 61974766--61974904 Score: 134
Period size: 38 Copynumber: 3.4 Consensus size: 38
61974756 TTTCAAATTA
*
61974766 ACATGTATAACTGTGGCATATCCACTTAGCACCACATT
1 ACATGTATAACCGTGGCATATCCACTTAGCACCACATT
* * *
61974804 ACATGTTTAACCGTGGTATATCCACTTAGCACCACGCTAATGA
1 ACATGTATAACCGTGGCATATCCACTTAGCACCA--C--AT-T
* *
61974847 ATCAATATATGTAACCGTGGCATATCCACTTAGCACCACGTT
1 A-C-ATGTA--TAACCGTGGCATATCCACTTAGCACCACATT
*
61974889 ACATGTTTAACCGTGG
1 ACATGTATAACCGTGG
61974905 TTTTCTCATT
Statistics
Matches: 81, Mismatches: 11, Indels: 18
0.74 0.10 0.16
Matches are distributed among these distances:
38 40 0.49
40 4 0.05
41 1 0.01
42 3 0.04
43 2 0.02
44 1 0.01
45 4 0.05
47 26 0.32
ACGTcount: A:0.30, C:0.25, G:0.16, T:0.29
Consensus pattern (38 bp):
ACATGTATAACCGTGGCATATCCACTTAGCACCACATT
Found at i:61982964 original size:31 final size:31
Alignment explanation
Indices: 61982926--61982988 Score: 126
Period size: 31 Copynumber: 2.0 Consensus size: 31
61982916 TCGTGACAGG
61982926 TAAGTTTTAAATATTTATAATTAATCGTTCT
1 TAAGTTTTAAATATTTATAATTAATCGTTCT
61982957 TAAGTTTTAAATATTTATAATTAATCGTTCT
1 TAAGTTTTAAATATTTATAATTAATCGTTCT
61982988 T
1 T
61982989 GAAACTAACT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.35, C:0.06, G:0.06, T:0.52
Consensus pattern (31 bp):
TAAGTTTTAAATATTTATAATTAATCGTTCT
Found at i:61993060 original size:37 final size:37
Alignment explanation
Indices: 61993010--61993088 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
61993000 TTATTACGAA
* * *
61993010 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
61993047 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
61993084 GTCTT
1 GTCTT
61993089 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:61997121 original size:40 final size:40
Alignment explanation
Indices: 61997091--61997400 Score: 476
Period size: 40 Copynumber: 7.8 Consensus size: 40
61997081 AGCATGATTA
* * *
61997091 CTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAATG
1 CTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATG
** *
61997131 CTCTTCGGGGTTTAGCACGGATATATCACTAGCACGAATG
1 CTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATG
* * *
61997171 CTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATG
1 CTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATG
* * * * *
61997211 CTCTTAGGGATTTAACCTGGATATATCACTAGCACGAATA
1 CTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATG
* *
61997251 CTCTTCGGAACTTAGTCCGGATATATCACTAGCACGAATG
1 CTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATG
61997291 CTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATG
1 CTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATG
61997331 CTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATG
1 CTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATG
61997371 CTCTTCGGGACTTAGCCCGGATATATCACT
1 CTCTTCGGGACTTAGCCCGGATATATCACT
61997401 CTCAATTCTC
Statistics
Matches: 241, Mismatches: 29, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 241 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (40 bp):
CTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATG
Found at i:61998663 original size:37 final size:37
Alignment explanation
Indices: 61998613--61998691 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
61998603 TTATTACGAA
* * *
61998613 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
61998650 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
61998687 GTCTT
1 GTCTT
61998692 TAGAGCTTGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:61998889 original size:47 final size:47
Alignment explanation
Indices: 61998812--61998927 Score: 162
Period size: 47 Copynumber: 2.5 Consensus size: 47
61998802 CTTCGGGACT
* * *
61998812 TATCACATTTATACACTTTCACATCTATCACATTGGCCACTCGGCCC
1 TATCACATATATACACTTTCACATCTATCACATCGGCCACTAGGCCC
* * *
61998859 TGTCACATATATACACTTTCACAT-TCATCACATCGGCCATTAGGCCT
1 TATCACATATATACACTTTCACATCT-ATCACATCGGCCACTAGGCCC
61998906 TATCACATATATACACTTTCAC
1 TATCACATATATACACTTTCAC
61998928 GTATACACAC
Statistics
Matches: 61, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
46 1 0.02
47 60 0.98
ACGTcount: A:0.28, C:0.31, G:0.08, T:0.33
Consensus pattern (47 bp):
TATCACATATATACACTTTCACATCTATCACATCGGCCACTAGGCCC
Found at i:62002357 original size:13 final size:13
Alignment explanation
Indices: 62002339--62002363 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
62002329 CGGCCGTGTA
62002339 AAGGACACGGGCC
1 AAGGACACGGGCC
62002352 AAGGACACGGGC
1 AAGGACACGGGC
62002364 ATGTGCCCGG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.28, G:0.40, T:0.00
Consensus pattern (13 bp):
AAGGACACGGGCC
Found at i:62011831 original size:47 final size:47
Alignment explanation
Indices: 62011768--62012071 Score: 419
Period size: 47 Copynumber: 6.4 Consensus size: 47
62011758 CCCTTCGGGA
* * *
62011768 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCACTCGGC
* * *
62011815 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGT
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCACTCGGC
* *
62011862 CTTATCTCATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCACTCGGC
* * * *
62011909 CTTATCACATATATACACTTTCAGATTCATCACGTTGGTCACTCGAC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCACTCGGC
* *
62011956 CCTATCACATATATACACTTTCACATTCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCACTCGGC
* * *
62012003 CCTATCACATATATATATACTTTCAAATTCATCACATTGGCCACTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCACTCGGC
* *
62012052 CCTATCACATATATATACTT
1 CTTATCACATATATACACTT
62012072 GTACATCAAT
Statistics
Matches: 235, Mismatches: 20, Indels: 4
0.91 0.08 0.02
Matches are distributed among these distances:
47 191 0.81
49 44 0.19
ACGTcount: A:0.28, C:0.29, G:0.09, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCACTCGGC
Found at i:62016440 original size:69 final size:69
Alignment explanation
Indices: 62016329--62016467 Score: 269
Period size: 69 Copynumber: 2.0 Consensus size: 69
62016319 GAGGCATATG
62016329 GCCTGTTCACATTGGCGTGTGACCTTTGAAACTTTAAAAATTTTGTTAACTTTTTGAGAAAATTT
1 GCCTGTTCACATTGGCGTGTGACCTTTGAAACTTTAAAAATTTTGTTAACTTTTTGAGAAAATTT
62016394 GTAT
66 GTAT
*
62016398 GCCTGTTCACATTGGCGTGTGACCTTTGAAACTTTAAAAATTTTGTTAAGTTTTTGAGAAAATTT
1 GCCTGTTCACATTGGCGTGTGACCTTTGAAACTTTAAAAATTTTGTTAACTTTTTGAGAAAATTT
62016463 GTAT
66 GTAT
62016467 G
1 G
62016468 TGCTCAGTTT
Statistics
Matches: 69, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
69 69 1.00
ACGTcount: A:0.27, C:0.12, G:0.19, T:0.42
Consensus pattern (69 bp):
GCCTGTTCACATTGGCGTGTGACCTTTGAAACTTTAAAAATTTTGTTAACTTTTTGAGAAAATTT
GTAT
Found at i:62029820 original size:49 final size:49
Alignment explanation
Indices: 62029748--62029847 Score: 191
Period size: 49 Copynumber: 2.0 Consensus size: 49
62029738 AAAATTTCGA
62029748 TACCATGAATTGAGTAGTTTTGTGTAGGTTAAAGGTTAAGAATATCTTG
1 TACCATGAATTGAGTAGTTTTGTGTAGGTTAAAGGTTAAGAATATCTTG
*
62029797 TACCATGAATTGAGTAGTTTTGTGTAGGTTAAAGGTTGAGAATATCTTG
1 TACCATGAATTGAGTAGTTTTGTGTAGGTTAAAGGTTAAGAATATCTTG
62029846 TA
1 TA
62029848 GGTAAATAAT
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 50 1.00
ACGTcount: A:0.30, C:0.06, G:0.25, T:0.39
Consensus pattern (49 bp):
TACCATGAATTGAGTAGTTTTGTGTAGGTTAAAGGTTAAGAATATCTTG
Found at i:62031081 original size:18 final size:18
Alignment explanation
Indices: 62031060--62031097 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 18
62031050 TAATTAAGAA
62031060 TTCTATTTACACTA-TTAT
1 TTCTATTTAC-CTATTTAT
62031078 TTCTATTTACCTATTTAT
1 TTCTATTTACCTATTTAT
62031096 TT
1 TT
62031098 ATTTATAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 3 0.16
18 16 0.84
ACGTcount: A:0.24, C:0.16, G:0.00, T:0.61
Consensus pattern (18 bp):
TTCTATTTACCTATTTAT
Found at i:62031157 original size:18 final size:18
Alignment explanation
Indices: 62031145--62031195 Score: 68
Period size: 18 Copynumber: 2.8 Consensus size: 18
62031135 AAAAAGATAG
62031145 AATAAAATTAAAATTAAA
1 AATAAAATTAAAATTAAA
*
62031163 ATTAAAATTAAAATTAAA
1 AATAAAATTAAAATTAAA
*
62031181 CATAAAGA-TAAAATT
1 AATAAA-ATTAAAATT
62031196 TATTTATTTA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
18 28 0.97
19 1 0.03
ACGTcount: A:0.67, C:0.02, G:0.02, T:0.29
Consensus pattern (18 bp):
AATAAAATTAAAATTAAA
Found at i:62031158 original size:6 final size:6
Alignment explanation
Indices: 62031147--62031180 Score: 68
Period size: 6 Copynumber: 5.7 Consensus size: 6
62031137 AAAGATAGAA
62031147 TAAAAT TAAAAT TAAAAT TAAAAT TAAAAT TAAA
1 TAAAAT TAAAAT TAAAAT TAAAAT TAAAAT TAAA
62031181 CATAAAGATA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (6 bp):
TAAAAT
Found at i:62039642 original size:27 final size:27
Alignment explanation
Indices: 62039512--62039642 Score: 190
Period size: 27 Copynumber: 4.9 Consensus size: 27
62039502 ATTACCAAGG
* *
62039512 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
*
62039539 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
*
62039566 TACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
* *
62039593 TACCCTTGATTCACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
* *
62039620 TACCCTTGATTTACAAAATTACT
1 TACCCTCGATTTACAGAATTACT
62039643 AAAATACCAT
Statistics
Matches: 96, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 96 1.00
ACGTcount: A:0.27, C:0.22, G:0.10, T:0.40
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACTGTTT
Found at i:62039650 original size:27 final size:27
Alignment explanation
Indices: 62039620--62039950 Score: 206
Period size: 27 Copynumber: 12.2 Consensus size: 27
62039610 ATTACTGTTT
* *
62039620 TACCCTTGATTTACAAAATTACTAAAA
1 TACCCTTGATTTATAAAATTACCAAAA
* * *
62039647 TA-CCATCAGTTTACAAAATTACCAAAA
1 TACCCTTGA-TTTATAAAATTACCAAAA
* **
62039674 TACCCTCGA-CCAGTAAAATTACCAAAA
1 TACCCTTGATTTA-TAAAATTACCAAAA
* * * * *
62039701 TACCCTAG-TCTGTAAAATTGCTAAAA
1 TACCCTTGATTTATAAAATTACCAAAA
* *
62039727 TACCCTTGGTTTGTAAAATTACCAAAA
1 TACCCTTGATTTATAAAATTACCAAAA
** *
62039754 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTTGATTTATAAAATTACCAAAA
* *
62039781 TACCCCT-AGTTTGTAAAATTACCAAAA
1 TACCCTTGA-TTTATAAAATTACCAAAA
* * * *
62039808 TACCAC-TGGTTTGTGAAATTACCGAAA
1 TACC-CTTGATTTATAAAATTACCAAAA
** *
62039835 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTTGATTTATAAAATTACCAAAA
* * *
62039862 TACCCCTGATTTACAAAGTTA-CAGAAA
1 TACCCTTGATTTATAAAATTACCA-AAA
* ***
62039889 TACCCTTGACTTTCTAAAAATTATGGAAA
1 TACCCTTGA-TTTAT-AAAATTACCAAAA
* * * **
62039918 TACCATTGGTTTACAAAATTACTGAAA
1 TACCCTTGATTTATAAAATTACCAAAA
62039945 TACCCT
1 TACCCT
62039951 AGGTTTGTAG
Statistics
Matches: 241, Mismatches: 50, Indels: 26
0.76 0.16 0.08
Matches are distributed among these distances:
26 28 0.12
27 187 0.78
28 10 0.04
29 16 0.07
ACGTcount: A:0.41, C:0.21, G:0.08, T:0.30
Consensus pattern (27 bp):
TACCCTTGATTTATAAAATTACCAAAA
Found at i:62039678 original size:54 final size:54
Alignment explanation
Indices: 62039620--62039977 Score: 249
Period size: 54 Copynumber: 6.6 Consensus size: 54
62039610 ATTACTGTTT
** *
62039620 TACCCTTGATTTACAAAATTACTAAAATACCATCAGTTTACAAAATTACCAAAA
1 TACCCTTGATTTGTAAAATTACCAAAATACCATCAGTTTACAAAATTACCAAAA
* *** * * ** * *
62039674 TACCCTCGACCAGTAAAATTACCAAAATACCCT-AGTCTGTAAAATTGCTAAAA
1 TACCCTTGATTTGTAAAATTACCAAAATACCATCAGTTTACAAAATTACCAAAA
* * * **
62039727 TACCCTTGGTTTGTAAAATTACCAAAATACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTTGATTTGTAAAATTACCAAAATACCATCAGTTTACAAAATTACCAAAA
* * *** *
62039781 TACCCCT-AGTTTGTAAAATTACCAAAATACCA-CTGGTTTGTGAAATTACCGAAA
1 TACCCTTGA-TTTGTAAAATTACCAAAATACCATC-AGTTTACAAAATTACCAAAA
** * * *
62039835 TACCCTCAATTTGTAAAATTACCAAAATACC-CCTGATTTACAAAGTTA-CAGAAA
1 TACCCTTGATTTGTAAAATTACCAAAATACCATCAG-TTTACAAAATTACCA-AAA
* *** ** **
62039889 TACCCTTGACTTTCTAAAAATTATGGAAATACCATTGGTTTACAAAATTACTGAAA
1 TACCCTTGA-TTTGT-AAAATTACCAAAATACCATCAGTTTACAAAATTACCAAAA
* * * * *
62039945 TACCCTAGGTTTGTAGATTTACCAAAACACCAT
1 TACCCTTGATTTGTAAAATTACCAAAATACCAT
62039978 TGTAGGATGA
Statistics
Matches: 235, Mismatches: 58, Indels: 22
0.75 0.18 0.07
Matches are distributed among these distances:
53 46 0.20
54 144 0.61
55 9 0.04
56 35 0.15
57 1 0.00
ACGTcount: A:0.41, C:0.21, G:0.09, T:0.30
Consensus pattern (54 bp):
TACCCTTGATTTGTAAAATTACCAAAATACCATCAGTTTACAAAATTACCAAAA
Found at i:62039705 original size:81 final size:81
Alignment explanation
Indices: 62039620--62039892 Score: 295
Period size: 81 Copynumber: 3.4 Consensus size: 81
62039610 ATTACTGTTT
* * ** * **
62039620 TACCCTTGATTTACAAAATTACTAAAATACCATCAGTTTACAAAATTACCAAAATACCCTCGACC
1 TACCCCTGATTTACAAAATTACTAAAATACCATCGGTTTGTAAAATTACCAAAATACCCTCAATT
*
62039685 AGTAAAATTACCAAAA
66 TGTAAAATTACCAAAA
* ** * * *
62039701 TA-CCCT-AGTCTGTAAAATTGCTAAAATACCCTTGGTTTGTAAAATTACCAAAATACCCTCAAT
1 TACCCCTGA-TTTACAAAATTACTAAAATACCATCGGTTTGTAAAATTACCAAAATACCCTCAAT
62039764 TTGTAAAATTACCAAAA
65 TTGTAAAATTACCAAAA
** * * *
62039781 TACCCCT-AGTTTGTAAAATTACCAAAATACCA-CTGGTTTGTGAAATTACCGAAATACCCTCAA
1 TACCCCTGA-TTTACAAAATTACTAAAATACCATC-GGTTTGTAAAATTACCAAAATACCCTCAA
62039844 TTTGTAAAATTACCAAAA
64 TTTGTAAAATTACCAAAA
*
62039862 TACCCCTGATTTACAAAGTTAC-AGAAATACC
1 TACCCCTGATTTACAAAATTACTA-AAATACC
62039893 CTTGACTTTC
Statistics
Matches: 163, Mismatches: 24, Indels: 10
0.83 0.12 0.05
Matches are distributed among these distances:
79 1 0.01
80 65 0.40
81 96 0.59
82 1 0.01
ACGTcount: A:0.41, C:0.22, G:0.08, T:0.29
Consensus pattern (81 bp):
TACCCCTGATTTACAAAATTACTAAAATACCATCGGTTTGTAAAATTACCAAAATACCCTCAATT
TGTAAAATTACCAAAA
Found at i:62040070 original size:27 final size:27
Alignment explanation
Indices: 62040001--62040096 Score: 106
Period size: 27 Copynumber: 3.6 Consensus size: 27
62039991 GACTAAAATA
**
62040001 CCCCTATTA-GGTAAAAAGATCGTAAAG
1 CCCCTA-TAGGGTAAAGTGATCGTAAAG
*
62040028 CCCCTGTAGGGTAAAGTGATCGTAAAG
1 CCCCTATAGGGTAAAGTGATCGTAAAG
*
62040055 CCCCTATAGGGTAAAGTGACCGTAATA-
1 CCCCTATAGGGTAAAGTGATCGTAA-AG
* *
62040082 CCCCTGTATGGTAAA
1 CCCCTATAGGGTAAA
62040097 ATGACGAATA
Statistics
Matches: 60, Mismatches: 7, Indels: 4
0.85 0.10 0.06
Matches are distributed among these distances:
26 2 0.03
27 57 0.95
28 1 0.02
ACGTcount: A:0.33, C:0.21, G:0.23, T:0.23
Consensus pattern (27 bp):
CCCCTATAGGGTAAAGTGATCGTAAAG
Found at i:62040934 original size:26 final size:26
Alignment explanation
Indices: 62040904--62041050 Score: 176
Period size: 26 Copynumber: 5.8 Consensus size: 26
62040894 GAGGAAGTGC
* *
62040904 AAAAGGGCTTATGCCCCAGTTTACCA
1 AAAAGGGCTTATGCCCCAGTTTATCG
* * * *
62040930 AAAAGGTCTTAT-TCCCAATTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATCG
*
62040955 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATCG
* * *
62040981 AAAATGGCTTATGCCTCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATCG
62041007 AAAAGGGCTT-TG-CCCAGTTTATCG
1 AAAAGGGCTTATGCCCCAGTTTATCG
62041031 AAAAGGGCTT-TGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
62041051 ATTAAAGAGG
Statistics
Matches: 101, Mismatches: 18, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
24 22 0.22
25 28 0.28
26 51 0.50
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.30
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATCG
Found at i:62040992 original size:51 final size:52
Alignment explanation
Indices: 62040904--62041044 Score: 193
Period size: 51 Copynumber: 2.8 Consensus size: 52
62040894 GAGGAAGTGC
*
62040904 AAAAGGGCTTATGCCCCAGTTTACC-AAAAAGGTCTTATTCC-CAATTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCGAAAAAGG-CTTATGCCTCAATTTATTG
* *
62040955 AAAAGGGCTTATGCCCCAGTTTACCGAAAATGGCTTATGCCTCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCGAAAAAGGCTTATGCCTCAATTTATTG
* *
62041007 AAAAGGGCTT-TG-CCCAGTTTATCGAAAAGGGCTT-TGCC
1 AAAAGGGCTTATGCCCCAGTTTACCGAAAAAGGCTTATGCC
62041045 CCAGTTATTA
Statistics
Matches: 83, Mismatches: 5, Indels: 6
0.88 0.05 0.06
Matches are distributed among these distances:
49 4 0.05
50 20 0.24
51 34 0.41
52 25 0.30
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (52 bp):
AAAAGGGCTTATGCCCCAGTTTACCGAAAAAGGCTTATGCCTCAATTTATTG
Found at i:62041242 original size:42 final size:42
Alignment explanation
Indices: 62041195--62041286 Score: 148
Period size: 42 Copynumber: 2.2 Consensus size: 42
62041185 TAGTCTCCCC
* ** *
62041195 AAATGGGCTTGCATACATTCATTGGTATTTCATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
62041237 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
62041279 AAATGGGC
1 AAATGGGC
62041287 CTAAGGGCCA
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.29, C:0.14, G:0.22, T:0.35
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
Found at i:62043650 original size:27 final size:27
Alignment explanation
Indices: 62043620--62043679 Score: 75
Period size: 27 Copynumber: 2.2 Consensus size: 27
62043610 CAAATTGTAA
62043620 AATTACCAAAGTACCCTCGATTTATAG
1 AATTACCAAAGTACCCTCGATTTATAG
**** *
62043647 AATTACCGTTTTACCCTCGATTTATGG
1 AATTACCAAAGTACCCTCGATTTATAG
62043674 AATTAC
1 AATTAC
62043680 TGTTTTACCC
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.32, C:0.22, G:0.12, T:0.35
Consensus pattern (27 bp):
AATTACCAAAGTACCCTCGATTTATAG
Found at i:62043678 original size:54 final size:54
Alignment explanation
Indices: 62043620--62043724 Score: 129
Period size: 54 Copynumber: 1.9 Consensus size: 54
62043610 CAAATTGTAA
* *
62043620 AATTACCAAAGTACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTATGG
1 AATTACCAAAGTACCCTCGATTCACAGAATTACCGTTTTACCCTCGATTTATGG
***** * *
62043674 AATTACTGTTTTACCCTTGATTCACAGAATTACTGTTTTACCCTCGATTTA
1 AATTACCAAAGTACCCTCGATTCACAGAATTACCGTTTTACCCTCGATTTA
62043725 CAAAATTACT
Statistics
Matches: 42, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
54 42 1.00
ACGTcount: A:0.28, C:0.22, G:0.11, T:0.39
Consensus pattern (54 bp):
AATTACCAAAGTACCCTCGATTCACAGAATTACCGTTTTACCCTCGATTTATGG
Found at i:62043684 original size:27 final size:27
Alignment explanation
Indices: 62043631--62043734 Score: 145
Period size: 27 Copynumber: 3.9 Consensus size: 27
62043621 ATTACCAAAG
*
62043631 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACTGTTT
*
62043658 TACCCTCGATTTATGGAATTACTGTTT
1 TACCCTCGATTTATAGAATTACTGTTT
* * *
62043685 TACCCTTGATTCACAGAATTACTGTTT
1 TACCCTCGATTTATAGAATTACTGTTT
* *
62043712 TACCCTCGATTTACAAAATTACT
1 TACCCTCGATTTATAGAATTACT
62043735 AAAATACCAT
Statistics
Matches: 68, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 68 1.00
ACGTcount: A:0.27, C:0.22, G:0.11, T:0.40
Consensus pattern (27 bp):
TACCCTCGATTTATAGAATTACTGTTT
Found at i:62043742 original size:27 final size:27
Alignment explanation
Indices: 62043712--62043958 Score: 230
Period size: 27 Copynumber: 9.2 Consensus size: 27
62043702 ATTACTGTTT
** *
62043712 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTCGATTTGTAAAATTACCAAAA
* * ** *
62043739 TACCATCGGTTTACAAAAGTACCAAAA
1 TACCCTCGATTTGTAAAATTACCAAAA
* **
62043766 TACCATCGATCAGTAAAATTACCAAAA
1 TACCCTCGATTTGTAAAATTACCAAAA
* * * *
62043793 TACCCTAG-TGTGTAAAATTGCTAAAA
1 TACCCTCGATTTGTAAAATTACCAAAA
* *
62043819 TACCCTTGGTTTGTAAAATTACCAAAA
1 TACCCTCGATTTGTAAAATTACCAAAA
**
62043846 TACCCTTAATTTGTAAAATTACCAAAA
1 TACCCTCGATTTGTAAAATTACCAAAA
*
62043873 TACCC-CTAGTTTGTAAAATTACCAAAA
1 TACCCTCGA-TTTGTAAAATTACCAAAA
* * *
62043900 TACCACT-GGTTTGTGAAATTACCGAAA
1 TACC-CTCGATTTGTAAAATTACCAAAA
* *
62043927 TACCCTCAATTTGTAAAATTAGCAAAA
1 TACCCTCGATTTGTAAAATTACCAAAA
62043954 TACCC
1 TACCC
62043959 CTGATTTACA
Statistics
Matches: 182, Mismatches: 33, Indels: 10
0.81 0.15 0.04
Matches are distributed among these distances:
26 24 0.13
27 157 0.86
28 1 0.01
ACGTcount: A:0.41, C:0.21, G:0.09, T:0.29
Consensus pattern (27 bp):
TACCCTCGATTTGTAAAATTACCAAAA
Found at i:62043797 original size:81 final size:80
Alignment explanation
Indices: 62043712--62043984 Score: 264
Period size: 81 Copynumber: 3.4 Consensus size: 80
62043702 ATTACTGTTT
** * * * *
62043712 TACCCTCGATTTACAAAATTACTAAAATACCATCGGTTTACAAAAGTACCAAAATACCATCGATC
1 TACCC-CGATTTACAAAATTACTAAAATACCATCGGTTTGTAAAATTACCAAAATACCCTCAATT
*
62043777 AGTAAAATTACCAAAA
65 TGTAAAATTACCAAAA
* * ** * * * *
62043793 TA-CCCTAGTGTGTAAAATTGCTAAAATACCCTTGGTTTGTAAAATTACCAAAATACCCTTAATT
1 TACCCCGA-TTTACAAAATTACTAAAATACCATCGGTTTGTAAAATTACCAAAATACCCTCAATT
62043857 TGTAAAATTACCAAAA
65 TGTAAAATTACCAAAA
* ** * * *
62043873 TACCCCTAGTTTGTAAAATTACCAAAATACCA-CTGGTTTGTGAAATTACCGAAATACCCTCAAT
1 TACCCCGA-TTTACAAAATTACTAAAATACCATC-GGTTTGTAAAATTACCAAAATACCCTCAAT
*
62043937 TTGTAAAATTAGCAAAA
64 TTGTAAAATTACCAAAA
*
62043954 TACCCCTGATTTACAAAGTTAC-AGAAATACC
1 TACCCC-GATTTACAAAATTACTA-AAATACC
62043985 CTTGACTTTC
Statistics
Matches: 159, Mismatches: 28, Indels: 10
0.81 0.14 0.05
Matches are distributed among these distances:
79 2 0.01
80 63 0.40
81 93 0.58
82 1 0.01
ACGTcount: A:0.41, C:0.21, G:0.10, T:0.29
Consensus pattern (80 bp):
TACCCCGATTTACAAAATTACTAAAATACCATCGGTTTGTAAAATTACCAAAATACCCTCAATTT
GTAAAATTACCAAAA
Found at i:62043981 original size:54 final size:54
Alignment explanation
Indices: 62043778--62043986 Score: 166
Period size: 54 Copynumber: 3.9 Consensus size: 54
62043768 CCATCGATCA
* **
62043778 GTAAAATTACCAAAATA-CCCT-AGTGTGTA-AAATTGCTA-AAATACCCT-TGGTTT
1 GTAAAATTACCAAAATACCCCTGA-T-T-TACAAATTAC-AGAAATACCCTCTAATTT
* * *
62043831 GTAAAATTACCAAAATACCCTTAATTTGTA-AAATTACCA-AAATACCC-CTAGTTT
1 GTAAAATTACCAAAATACCCCTGA-TT-TACAAATTA-CAGAAATACCCTCTAATTT
* * ** *
62043885 GTAAAATTACCAAAATACCACTGGTTTGTGAAATTACCGAAATACCCTC-AATTT
1 GTAAAATTACCAAAATACCCCTGATTT-ACAAATTACAGAAATACCCTCTAATTT
*
62043939 GTAAAATTAGCAAAATACCCCTGATTTACAAAGTTACAGAAATACCCT
1 GTAAAATTACCAAAATACCCCTGATTTACAAA-TTACAGAAATACCCT
62043987 TGACTTTCTA
Statistics
Matches: 130, Mismatches: 17, Indels: 17
0.79 0.10 0.10
Matches are distributed among these distances:
52 1 0.01
53 23 0.18
54 102 0.78
55 4 0.03
ACGTcount: A:0.41, C:0.20, G:0.10, T:0.30
Consensus pattern (54 bp):
GTAAAATTACCAAAATACCCCTGATTTACAAATTACAGAAATACCCTCTAATTT
Found at i:62044036 original size:27 final size:27
Alignment explanation
Indices: 62043997--62044048 Score: 79
Period size: 27 Copynumber: 1.9 Consensus size: 27
62043987 TGACTTTCTA
62043997 AAAATTATGGAAATACCATTGGTTTAC
1 AAAATTATGGAAATACCATTGGTTTAC
*
62044024 AAAATTACT-GAAATACCCTTGGTTT
1 AAAATTA-TGGAAATACCATTGGTTT
62044049 GTAGATTTAC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
27 22 0.96
28 1 0.04
ACGTcount: A:0.38, C:0.13, G:0.13, T:0.35
Consensus pattern (27 bp):
AAAATTATGGAAATACCATTGGTTTAC
Found at i:62044123 original size:27 final size:27
Alignment explanation
Indices: 62044093--62044193 Score: 116
Period size: 27 Copynumber: 3.7 Consensus size: 27
62044083 GACTAAAATA
**
62044093 CCCCTATTA-GGTAAAAAGACCGTAAAG
1 CCCCTA-TAGGGTAAAGTGACCGTAAAG
*
62044120 CCCCTGTAGGGTAAAGTGACCGTAAAG
1 CCCCTATAGGGTAAAGTGACCGTAAAG
62044147 CCCCTATAGGGTAAAGTGACCGTAATA-
1 CCCCTATAGGGTAAAGTGACCGTAA-AG
* * *
62044174 CCCCTGTATGGTAAAATGAC
1 CCCCTATAGGGTAAAGTGAC
62044194 GAATATGCCC
Statistics
Matches: 65, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
26 2 0.03
27 62 0.95
28 1 0.02
ACGTcount: A:0.34, C:0.23, G:0.23, T:0.21
Consensus pattern (27 bp):
CCCCTATAGGGTAAAGTGACCGTAAAG
Found at i:62045049 original size:25 final size:26
Alignment explanation
Indices: 62044996--62045142 Score: 194
Period size: 26 Copynumber: 5.8 Consensus size: 26
62044986 GAGGAAGTGC
*
62044996 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATCG
* * * *
62045022 AAAAGGTCTTAT-TCCCAATTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATCG
*
62045047 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATCG
* *
62045073 AAAATGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATCG
62045099 AAAAGGGCTT-TG-CCCAGTTTATCG
1 AAAAGGGCTTATGCCCCAGTTTATCG
62045123 AAAAGGGCTT-TGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
62045143 ATTAAAGAGG
Statistics
Matches: 104, Mismatches: 15, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
24 23 0.22
25 29 0.28
26 52 0.50
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.29
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATCG
Found at i:62045072 original size:51 final size:51
Alignment explanation
Indices: 62044996--62045139 Score: 206
Period size: 51 Copynumber: 2.8 Consensus size: 51
62044986 GAGGAAGTGC
*
62044996 AAAAGGGCTTATGCCCCAGTTTACCGAAAAGGTCTTAT-TCCCAATTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCGAAAAGG-CTTATGCCCCAATTTATTG
*
62045047 AAAAGGGCTTATGCCCCAGTTTACCGAAAATGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCGAAAA-GGCTTATGCCCCAATTTATTG
*
62045099 AAAAGGGCTT-TG-CCCAGTTTATCGAAAAGGGCTT-TGCCCCA
1 AAAAGGGCTTATGCCCCAGTTTACCGAAAA-GGCTTATGCCCCA
62045140 GTTATTAAAG
Statistics
Matches: 87, Mismatches: 4, Indels: 6
0.90 0.04 0.06
Matches are distributed among these distances:
49 7 0.08
50 20 0.23
51 37 0.43
52 23 0.26
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (51 bp):
AAAAGGGCTTATGCCCCAGTTTACCGAAAAGGCTTATGCCCCAATTTATTG
Done.