Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100714657
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 3970000 characters in sequence are not A, C, G, or T
File 197 of 318
Found at i:62045334 original size:42 final size:42
Alignment explanation
Indices: 62045287--62045378 Score: 139
Period size: 42 Copynumber: 2.2 Consensus size: 42
62045277 TAGTCTCCCC
* ** * *
62045287 AAATGGGCTTGCATACATTCATTGGTATTTCATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATACTG
62045329 AAATGGGCTTGCATACATCCATTGACATTACATGTGATACTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATACTG
62045371 AAATGGGC
1 AAATGGGC
62045379 CTAAGGGCCA
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.29, C:0.15, G:0.22, T:0.34
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCCATTGACATTACATGTGATACTG
Found at i:62046152 original size:27 final size:27
Alignment explanation
Indices: 62046122--62046395 Score: 200
Period size: 27 Copynumber: 10.2 Consensus size: 27
62046112 ATTACTGTTT
* *
62046122 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTCGATTTATAAAATTACCAAAA
* * *
62046149 TACCATCGGTTTACAAAATTACCAAAA
1 TACCCTCGATTTATAAAATTACCAAAA
**
62046176 TACCCTCGA-CCAGTAAAATTACCAAAA
1 TACCCTCGATTTA-TAAAATTACCAAAA
* * * * *
62046203 TACCCTAG-TCTGTAAAATTGCTAAAA
1 TACCCTCGATTTATAAAATTACCAAAA
* * * *
62046229 TACCCTTGGTTTGTAAAATTACCGAAA
1 TACCCTCGATTTATAAAATTACCAAAA
* *
62046256 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTCGATTTATAAAATTACCAAAA
* *
62046283 TACCC-CTAGTTTGTAAAATTACCAAAA
1 TACCCTCGA-TTTATAAAATTACCAAAA
* * * *
62046310 TACCACT-GGTTTGTGAAATTACCGAAA
1 TACC-CTCGATTTATAAAATTACCAAAA
* *
62046337 TACCCTCAATTT-TTAAATTACCAAAA
1 TACCCTCGATTTATAAAATTACCAAAA
** * *
62046363 TACCCTTAATTTACAAAGTTA-CAGAAA
1 TACCCTCGATTTATAAAATTACCA-AAA
62046390 TACCCT
1 TACCCT
62046396 TGACTTTCTA
Statistics
Matches: 203, Mismatches: 35, Indels: 18
0.79 0.14 0.07
Matches are distributed among these distances:
26 49 0.24
27 153 0.75
28 1 0.00
ACGTcount: A:0.41, C:0.22, G:0.08, T:0.29
Consensus pattern (27 bp):
TACCCTCGATTTATAAAATTACCAAAA
Found at i:62046227 original size:80 final size:81
Alignment explanation
Indices: 62046136--62046367 Score: 281
Period size: 80 Copynumber: 2.9 Consensus size: 81
62046126 CTCGATTTAC
** * *
62046136 AAAATTACTAAAATACCATCGGTTTACAAAATTACCAAAATACCCTCGACCAGTAAAATTACCAA
1 AAAATTACTAAAATACCATCGGTTTGTAAAATTACCGAAATACCCTCAACCAGTAAAATTACCAA
62046201 AATA-CCCTAGTCTGT
66 AATACCCCTAGTCTGT
* * * ***
62046216 AAAATTGCTAAAATACCCTTGGTTTGTAAAATTACCGAAATACCCTCAATTTGTAAAATTACCAA
1 AAAATTACTAAAATACCATCGGTTTGTAAAATTACCGAAATACCCTCAACCAGTAAAATTACCAA
*
62046281 AATACCCCTAGTTTGT
66 AATACCCCTAGTCTGT
* * *** *
62046297 AAAATTACCAAAATACCA-CTGGTTTGTGAAATTACCGAAATACCCTCAA-TTTTTAAATTACCA
1 AAAATTACTAAAATACCATC-GGTTTGTAAAATTACCGAAATACCCTCAACCAGTAAAATTACCA
62046360 AAATACCC
65 AAATACCC
62046368 TTAATTTACA
Statistics
Matches: 132, Mismatches: 18, Indels: 4
0.86 0.12 0.03
Matches are distributed among these distances:
80 79 0.60
81 53 0.40
ACGTcount: A:0.41, C:0.22, G:0.08, T:0.28
Consensus pattern (81 bp):
AAAATTACTAAAATACCATCGGTTTGTAAAATTACCGAAATACCCTCAACCAGTAAAATTACCAA
AATACCCCTAGTCTGT
Found at i:62046228 original size:26 final size:26
Alignment explanation
Indices: 62046136--62046368 Score: 216
Period size: 27 Copynumber: 8.7 Consensus size: 26
62046126 CTCGATTTAC
* * * **
62046136 AAAATTACTAAAATACCATCGGTTTAC
1 AAAATTACCAAAATACCCT-AGTTTGT
* ***
62046163 AAAATTACCAAAATACCCTCGACCAGT
1 AAAATTACCAAAATACCCTAG-TTTGT
*
62046190 AAAATTACCAAAATACCCTAGTCTGT
1 AAAATTACCAAAATACCCTAGTTTGT
* * *
62046216 AAAATTGCTAAAATACCCTTGGTTTGT
1 AAAATTACCAAAATACCC-TAGTTTGT
* *
62046243 AAAATTACCGAAATACCCTCAATTTGT
1 AAAATTACCAAAATACCCT-AGTTTGT
62046270 AAAATTACCAAAATACCCCTAGTTTGT
1 AAAATTACCAAAATA-CCCTAGTTTGT
*
62046297 AAAATTACCAAAATACCACTGGTTTGT
1 AAAATTACCAAAATACC-CTAGTTTGT
* * *
62046324 GAAATTACCGAAATACCCTCAATTT-T
1 AAAATTACCAAAATACCCT-AGTTTGT
*
62046350 TAAATTACCAAAATACCCT
1 AAAATTACCAAAATACCCT
62046369 TAATTTACAA
Statistics
Matches: 171, Mismatches: 29, Indels: 13
0.80 0.14 0.06
Matches are distributed among these distances:
26 43 0.25
27 124 0.73
28 4 0.02
ACGTcount: A:0.41, C:0.22, G:0.08, T:0.29
Consensus pattern (26 bp):
AAAATTACCAAAATACCCTAGTTTGT
Found at i:62046396 original size:27 final size:26
Alignment explanation
Indices: 62046325--62046396 Score: 83
Period size: 26 Copynumber: 2.7 Consensus size: 26
62046315 CTGGTTTGTG
* * **
62046325 AAATTACCGAAATACCCTCAATTTTT
1 AAATTACAGAAATACCCTTAATTTAC
62046351 AAATTACCA-AAATACCCTTAATTTAC
1 AAATTA-CAGAAATACCCTTAATTTAC
62046377 AAAGTTACAGAAATACCCTT
1 AAA-TTACAGAAATACCCTT
62046397 GACTTTCTAA
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
26 25 0.64
27 14 0.36
ACGTcount: A:0.43, C:0.22, G:0.04, T:0.31
Consensus pattern (26 bp):
AAATTACAGAAATACCCTTAATTTAC
Found at i:62046602 original size:27 final size:27
Alignment explanation
Indices: 62046511--62046602 Score: 114
Period size: 27 Copynumber: 3.4 Consensus size: 27
62046501 ACCCCTATTA
*
62046511 GGTAAAAAGACCGTAAAGCCCCTGTAG
1 GGTAAAATGACCGTAAAGCCCCTGTAG
* *
62046538 GGTAAAGTGATCGTAAAGCCCCTGTAG
1 GGTAAAATGACCGTAAAGCCCCTGTAG
* **
62046565 GGTAAACTGACCGTAATA-CCCCTGTCT
1 GGTAAAATGACCGTAA-AGCCCCTGTAG
62046592 GGTAAAATGAC
1 GGTAAAATGAC
62046603 AAATATGCCT
Statistics
Matches: 56, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
27 55 0.98
28 1 0.02
ACGTcount: A:0.33, C:0.22, G:0.25, T:0.21
Consensus pattern (27 bp):
GGTAAAATGACCGTAAAGCCCCTGTAG
Found at i:62047484 original size:51 final size:52
Alignment explanation
Indices: 62047405--62047514 Score: 147
Period size: 51 Copynumber: 2.2 Consensus size: 52
62047395 GAGGAAGTGC
62047405 AAAAAGGCTTATGCCCCAGTTTACCG-AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAAGGCTTATGCCCCAGTTTACCGAAAAAGGGCTT-TGCCCCAGTTTATTG
* * *
62047457 AAAAGGGCTT-TGCCCCAGTTTATCGAAAAAGGGCTTTGCCCTAG-TTATT-
1 AAAAAGGCTTATGCCCCAGTTTACCGAAAAAGGGCTTTGCCCCAGTTTATTG
*
62047506 AAAGAGGCT
1 AAAAAGGCT
62047515 AGGCCTCCAG
Statistics
Matches: 52, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
49 7 0.13
50 5 0.10
51 21 0.40
52 19 0.37
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (52 bp):
AAAAAGGCTTATGCCCCAGTTTACCGAAAAAGGGCTTTGCCCCAGTTTATTG
Found at i:62047504 original size:25 final size:26
Alignment explanation
Indices: 62047405--62047502 Score: 137
Period size: 26 Copynumber: 3.8 Consensus size: 26
62047395 GAGGAAGTGC
* *
62047405 AAAAAGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATCG
*
62047431 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATCG
62047457 AAAAGGGCTT-TGCCCCAGTTTATCG
1 AAAAGGGCTTATGCCCCAGTTTATCG
*
62047482 AAAAAGGGCTT-TGCCCTAGTT
1 -AAAAGGGCTTATGCCCCAGTT
62047503 ATTAAAGAGG
Statistics
Matches: 66, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
25 14 0.21
26 52 0.79
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATCG
Found at i:62047706 original size:42 final size:42
Alignment explanation
Indices: 62047647--62047738 Score: 148
Period size: 42 Copynumber: 2.2 Consensus size: 42
62047637 TAGTCTCCCC
* ** *
62047647 AAATGGGCTTGCATACATTCATTGGTATTTCATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
62047689 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
62047731 AAATGGGC
1 AAATGGGC
62047739 CTAAGGGCCA
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.29, C:0.14, G:0.22, T:0.35
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
Found at i:62059611 original size:50 final size:49
Alignment explanation
Indices: 62059483--62059615 Score: 205
Period size: 49 Copynumber: 2.7 Consensus size: 49
62059473 TGTGGTGTGT
* *
62059483 CAGTGTAAGACCTGTCTGGGACATGGCATCGACACCAATAGATGAGAGC
1 CAGTGTAAGACCTGTCTGGGACATGGCATCGGCACCAATAGATGAAAGC
* *
62059532 CAGTGTAAGACCTGTCTGGGACATGGCATCGGC-CTCACTATATGAAAGC
1 CAGTGTAAGACCTGTCTGGGACATGGCATCGGCAC-CAATAGATGAAAGC
62059581 CAGTGTAAGACCATGTCTGGGACATGGCATCGGCA
1 CAGTGTAAGACC-TGTCTGGGACATGGCATCGGCA
62059616 TCTTAACTCA
Statistics
Matches: 77, Mismatches: 4, Indels: 4
0.91 0.05 0.05
Matches are distributed among these distances:
48 1 0.01
49 55 0.71
50 21 0.27
ACGTcount: A:0.28, C:0.23, G:0.29, T:0.20
Consensus pattern (49 bp):
CAGTGTAAGACCTGTCTGGGACATGGCATCGGCACCAATAGATGAAAGC
Found at i:62067542 original size:6 final size:6
Alignment explanation
Indices: 62067526--62067570 Score: 65
Period size: 6 Copynumber: 7.3 Consensus size: 6
62067516 TATAAACACC
62067526 TATTATT TATTTT TATTATT TA-TTT TATTTT TATTTT TATTTT TA
1 TATT-TT TATTTT TATT-TT TATTTT TATTTT TATTTT TATTTT TA
62067571 AATTACTTTT
Statistics
Matches: 36, Mismatches: 0, Indels: 5
0.88 0.00 0.12
Matches are distributed among these distances:
5 4 0.11
6 24 0.67
7 8 0.22
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (6 bp):
TATTTT
Found at i:62067563 original size:24 final size:23
Alignment explanation
Indices: 62067526--62067585 Score: 75
Period size: 24 Copynumber: 2.5 Consensus size: 23
62067516 TATAAACACC
**
62067526 TATTATTTATTTTTATTATTTATTT
1 TATT-TTTATTTTTATT-TTTAAAT
62067551 TATTTTTATTTTTATTTTTAAAT
1 TATTTTTATTTTTATTTTTAAAT
62067574 TACTTTTTATTT
1 TA-TTTTTATTT
62067586 CCATTTAATA
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
23 7 0.22
24 21 0.66
25 4 0.12
ACGTcount: A:0.23, C:0.02, G:0.00, T:0.75
Consensus pattern (23 bp):
TATTTTTATTTTTATTTTTAAAT
Found at i:62071651 original size:27 final size:27
Alignment explanation
Indices: 62071621--62071798 Score: 178
Period size: 27 Copynumber: 6.6 Consensus size: 27
62071611 ATATTGAGTC
* *
62071621 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* *
62071648 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
62071675 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
62071703 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
62071730 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* * * *
62071757 CGCACACTTAGTGCAACATACTTAAAT
1 CGCACACTTAGTGCTACATAATCAACT
62071784 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
62071799 GTACAATTTA
Statistics
Matches: 128, Mismatches: 20, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
27 104 0.81
28 24 0.19
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.28
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:62071760 original size:82 final size:81
Alignment explanation
Indices: 62071642--62071797 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
62071632 TGCTATATAA
* * *
62071642 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATACTCAAA-TCGCA
62071707 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * ** *
62071724 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATACTTAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATACTCAAATCGCA
62071788 CACTTAGTGC
65 CACTTAGTGC
62071798 TGTACAATTT
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 16 0.25
82 49 0.75
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.28
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATACTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:62079569 original size:27 final size:27
Alignment explanation
Indices: 62079539--62079716 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
62079529 ATATTGAGTC
* * * *
62079539 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
62079566 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
62079593 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
62079621 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
62079648 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
62079675 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
62079702 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
62079717 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:62079678 original size:82 final size:81
Alignment explanation
Indices: 62079560--62079715 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
62079550 TGCTATATAA
* *
62079560 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
62079625 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
62079642 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
62079706 CACTTAGTGC
65 CACTTAGTGC
62079716 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:62091495 original size:49 final size:49
Alignment explanation
Indices: 62091436--62091558 Score: 151
Period size: 49 Copynumber: 2.5 Consensus size: 49
62091426 GGTGTGTCAA
*
62091436 TGTAAGACCTGTCTGGGACATGGCATCTA-CAC-CGATAGATGAGAGCCAG
1 TGTAAGACCTGTCTGGGACATGGCATC-AGC-CTCGATAGATGAAAGCCAG
* * * *
62091485 TGTAAGACCTGTCTAGGACATGGCATCAGCCTCGCTATATGAAAGCTAG
1 TGTAAGACCTGTCTGGGACATGGCATCAGCCTCGATAGATGAAAGCCAG
*
62091534 TGTAAGACCATGCCTGGGACATGGC
1 TGTAAGACC-TGTCTGGGACATGGC
62091559 TTCGACATCT
Statistics
Matches: 64, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
48 2 0.03
49 49 0.77
50 13 0.20
ACGTcount: A:0.28, C:0.23, G:0.28, T:0.22
Consensus pattern (49 bp):
TGTAAGACCTGTCTGGGACATGGCATCAGCCTCGATAGATGAAAGCCAG
Found at i:62094671 original size:30 final size:30
Alignment explanation
Indices: 62094635--62094694 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
62094625 TTCCCGAGCC
62094635 TAGGGGCAAAA-GTGTAATTATGCAAAAGTT
1 TAGGGGCAAAATG-GTAATTATGCAAAAGTT
* *
62094665 TAGGGGCAAAATGGTAATTTTGCCAAAGTT
1 TAGGGGCAAAATGGTAATTATGCAAAAGTT
62094695 CGTATTAAAG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
30 26 0.96
31 1 0.04
ACGTcount: A:0.37, C:0.08, G:0.27, T:0.28
Consensus pattern (30 bp):
TAGGGGCAAAATGGTAATTATGCAAAAGTT
Found at i:62095408 original size:49 final size:50
Alignment explanation
Indices: 62095341--62095587 Score: 282
Period size: 49 Copynumber: 5.0 Consensus size: 50
62095331 AGCTATTGTG
* * *
62095341 AGGTCACGTGTGTAGTACTAAGTGCAAGCTACTACGTGTACCAGATTGTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTT
* * * * *
62095391 -GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTGATAACTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAT-AGTT
* * * * *
62095441 CGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTT
** * * *
62095491 AGGTCATGTGTGTAGTACTAAGTGCAGACTACTACGTGTACCGGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTT
* * *
62095541 -GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAG
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAG
62095588 CTTCGGCTAC
Statistics
Matches: 162, Mismatches: 33, Indels: 5
0.81 0.17 0.03
Matches are distributed among these distances:
49 78 0.48
50 46 0.28
51 38 0.23
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.29
Consensus pattern (50 bp):
AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTT
Found at i:62095585 original size:99 final size:100
Alignment explanation
Indices: 62095344--62095585 Score: 317
Period size: 100 Copynumber: 2.4 Consensus size: 100
62095334 TATTGTGAGG
* * * *
62095344 TCACGTGTGTAGTACTAAGTGCAAGCTACTACGTGTACCAGATTGTTGGTCGCATGTGTAGTACT
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGTTGGTCACATGTGTAGTACT
* * *
62095409 AAGTGCAGGCTACTATGCGTACCTGATAACTTCGA
66 AAGTGCAGACTACTACGCGTACCGGATAACTTCGA
* * **
62095444 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCATGTGTGTAGTAC
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGTT-GGTCACATGTGTAGTAC
* *
62095509 TAAGTGCAGACTACTACGTGTACCGGATAA-TT-GG
65 TAAGTGCAGACTACTACGCGTACCGGATAACTTCGA
* * *
62095543 TCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGAT
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAT
62095586 AGCTTCGGCT
Statistics
Matches: 125, Mismatches: 16, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
99 39 0.31
100 46 0.37
101 40 0.32
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (100 bp):
TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGTTGGTCACATGTGTAGTACT
AAGTGCAGACTACTACGCGTACCGGATAACTTCGA
Found at i:62104964 original size:43 final size:42
Alignment explanation
Indices: 62104890--62104970 Score: 117
Period size: 43 Copynumber: 1.9 Consensus size: 42
62104880 TCTGAACTCA
* **
62104890 TTCACCGGCATTTCGCCTGCTAGGCTTGAAGCCCGATATCAT
1 TTCACCGGCATTTAGCCTGCTAGGCCCGAAGCCCGATATCAT
*
62104932 TTCACTGGCATTTTAGCCTGCTAGGCCCGAAGCCCGATA
1 TTCACCGGCA-TTTAGCCTGCTAGGCCCGAAGCCCGATA
62104971 ATATTATTCA
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
42 9 0.26
43 25 0.74
ACGTcount: A:0.20, C:0.31, G:0.22, T:0.27
Consensus pattern (42 bp):
TTCACCGGCATTTAGCCTGCTAGGCCCGAAGCCCGATATCAT
Found at i:62111057 original size:39 final size:40
Alignment explanation
Indices: 62110962--62111145 Score: 186
Period size: 40 Copynumber: 4.7 Consensus size: 40
62110952 TTGAATGCTG
* *
62110962 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
62111000 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
* *
62111041 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
*
62111080 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT
* *
62111119 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
62111146 GACGAGGAGC
Statistics
Matches: 124, Mismatches: 12, Indels: 17
0.81 0.08 0.11
Matches are distributed among these distances:
39 54 0.44
40 59 0.48
41 10 0.08
42 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:62111097 original size:79 final size:81
Alignment explanation
Indices: 62110962--62111145 Score: 220
Period size: 79 Copynumber: 2.3 Consensus size: 81
62110952 TTGAATGCTG
*
62110962 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
62111025 TGTGCGAGA-TACTA-A
66 TGTGCGA-ATTACTATA
* * * **
62111040 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
62111102 TTTGTGCGAATTACTATA
64 TTTGTGCGAATTACTATA
* *
62111120 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
62111146 GACGAGGAGC
Statistics
Matches: 91, Mismatches: 8, Indels: 11
0.83 0.07 0.10
Matches are distributed among these distances:
78 11 0.12
79 59 0.65
80 21 0.23
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAATTACTATA
Found at i:62111167 original size:79 final size:79
Alignment explanation
Indices: 62110963--62111178 Score: 205
Period size: 79 Copynumber: 2.7 Consensus size: 79
62110953 TGAATGCTGT
* * * **
62110963 CCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCATT
1 CCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTGACTAAATCCGGGTTAA-ATCCCGAAGGCATT
*
62111025 TGTGCGAGATACTAATT
63 TGTGCGAGATACTAATA
* *
62111042 CCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGT
1 CCGGGCTAAGCCCGAAGGCATTTGTGCGAGTGACTAAATCCGGGTTAAATCCCGAAGGCATTTGT
62111107 GCGA-ATTACT-ATAA
66 GCGAGA-TACTAAT-A
* * *
62111121 CCGGGCTATGTCCCGAAGGCATTTG-GACGAG-GAGCTATATCC-GGTTAAATTCCGAAGG
1 CCGGGCTAAG-CCCGAAGGCATTTGTG-CGAGTGA-CTAAATCCGGGTTAAATCCCGAAGG
62111179 TACGTGATTT
Statistics
Matches: 116, Mismatches: 13, Indels: 16
0.80 0.09 0.11
Matches are distributed among these distances:
78 13 0.11
79 72 0.62
80 31 0.27
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (79 bp):
CCGGGCTAAGCCCGAAGGCATTTGTGCGAGTGACTAAATCCGGGTTAAATCCCGAAGGCATTTGT
GCGAGATACTAATA
Found at i:62118977 original size:35 final size:37
Alignment explanation
Indices: 62118922--62119045 Score: 116
Period size: 36 Copynumber: 3.4 Consensus size: 37
62118912 ACATATCGGA
*
62118922 TAAGACGAA-GCATTGTGCGAGATACTAATTCCGGGC
1 TAAGACGAAGGCATTGTGCGAGATACTAAATCCGGGC
* *
62118958 TAAG-CGAAGGCATTG-GCGAGTTACTAAATCCGGGT
1 TAAGACGAAGGCATTGTGCGAGATACTAAATCCGGGC
* *
62118993 TAAGTCCG-AGGCATTGTGCGA-TTACTATAA-CCGGGC
1 TAAG-ACGAAGGCATTGTGCGAGATACTA-AATCCGGGC
* *
62119029 TATGTCCGAAGGCATTG
1 TAAG-ACGAAGGCATTG
62119046 AACGGGAGCT
Statistics
Matches: 77, Mismatches: 5, Indels: 11
0.83 0.05 0.12
Matches are distributed among these distances:
35 25 0.32
36 36 0.47
37 16 0.21
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.24
Consensus pattern (37 bp):
TAAGACGAAGGCATTGTGCGAGATACTAAATCCGGGC
Found at i:62134598 original size:40 final size:38
Alignment explanation
Indices: 62134426--62134604 Score: 159
Period size: 40 Copynumber: 4.6 Consensus size: 38
62134416 ATGATGTCCG
* * *
62134426 GGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCC
1 GGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTA-AACC
* * *
62134465 GGACTAAGAT-CTGAAGGCATTTGTACGAGTTACTAATTCC
1 GG-CTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAA-ACC
* *
62134505 GGCTAAG-CCCGAAGGC-TTTGGTGCGAGTCACTAAATCG
1 GGCTAAGTCCCGAAGGCATTT-GTGCGAGTTACTAAA-CC
*
62134543 GGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACC
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AACC
*
62134582 AGGCTATGTCCCGAAGGCATTTG
1 -GGCTAAGTCCCGAAGGCATTTG
62134605 AACGAGTAGC
Statistics
Matches: 115, Mismatches: 14, Indels: 21
0.77 0.09 0.14
Matches are distributed among these distances:
37 3 0.03
38 26 0.23
39 30 0.26
40 49 0.43
41 7 0.06
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (38 bp):
GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAACC
Found at i:62143212 original size:40 final size:40
Alignment explanation
Indices: 62143116--62143223 Score: 155
Period size: 40 Copynumber: 2.6 Consensus size: 40
62143106 CGAATTCTCA
*
62143116 CACACTAAGTGCCAATACATAGCCGAAGCTATTTTAATCTTG
1 CACACTAAGTGCC-ATACATAGCCGAAGCTATTTGAATC-TG
* *
62143158 CACACTAAATGCCATACATAGCTGAAGCTATCTTGAATC-G
1 CACACTAAGTGCCATACATAGCCGAAGCTAT-TTGAATCTG
62143198 CACACTAAGTGCCATACATAGCCGAA
1 CACACTAAGTGCCATACATAGCCGAA
62143224 TTTTCGTCAA
Statistics
Matches: 60, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
40 25 0.42
41 17 0.28
42 18 0.30
ACGTcount: A:0.35, C:0.26, G:0.15, T:0.24
Consensus pattern (40 bp):
CACACTAAGTGCCATACATAGCCGAAGCTATTTGAATCTG
Found at i:62148941 original size:14 final size:16
Alignment explanation
Indices: 62148922--62148960 Score: 55
Period size: 14 Copynumber: 2.6 Consensus size: 16
62148912 AAGAAAATTA
*
62148922 TGATATATGACA-A-G
1 TGATATATGAAATATG
62148936 TGATATATGAAATATG
1 TGATATATGAAATATG
62148952 TGATATATG
1 TGATATATG
62148961 TTATGTAAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 11 0.50
15 1 0.05
16 10 0.45
ACGTcount: A:0.41, C:0.03, G:0.21, T:0.36
Consensus pattern (16 bp):
TGATATATGAAATATG
Found at i:62149244 original size:45 final size:45
Alignment explanation
Indices: 62149157--62149268 Score: 138
Period size: 45 Copynumber: 2.5 Consensus size: 45
62149147 GAATTCCGAG
62149157 CTCGTTGAGTTGGTCCGAGTTCGTGATATATGTGAGAAATCTGAA
1 CTCGTTGAGTTGGTCCGAGTTCGTGATATATGTGAGAAATCTGAA
* * * * *
62149202 CTTGTTGAGTTGGCCCAAGTTCGT-AGTATATGTGA-AGCATCTGAG
1 CTCGTTGAGTTGGTCCGAGTTCGTGA-TATATGTGAGA-AATCTGAA
*
62149247 CTCGTTAAGTTGGTCCGAGTTC
1 CTCGTTGAGTTGGTCCGAGTTC
62149269 ATTATGGATA
Statistics
Matches: 56, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
44 2 0.04
45 54 0.96
ACGTcount: A:0.21, C:0.16, G:0.29, T:0.34
Consensus pattern (45 bp):
CTCGTTGAGTTGGTCCGAGTTCGTGATATATGTGAGAAATCTGAA
Found at i:62149292 original size:44 final size:44
Alignment explanation
Indices: 62149237--62149321 Score: 116
Period size: 44 Copynumber: 1.9 Consensus size: 44
62149227 GTATATGTGA
* * * *
62149237 AGCATCTGAGCTCGTTAAGTTGGTCCGAGTTCATTATGGATACG
1 AGCATCCGAGCTCGCTAAGGTGGTCCGAGTTCATAATGGATACG
* *
62149281 AGCATCCGAGCTTGCTGAGGTGGTCCGAGTTCATAATGGAT
1 AGCATCCGAGCTCGCTAAGGTGGTCCGAGTTCATAATGGAT
62149322 GTGATACATG
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
44 35 1.00
ACGTcount: A:0.22, C:0.19, G:0.29, T:0.29
Consensus pattern (44 bp):
AGCATCCGAGCTCGCTAAGGTGGTCCGAGTTCATAATGGATACG
Found at i:62159359 original size:26 final size:26
Alignment explanation
Indices: 62159323--62159373 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 26
62159313 TTTGTTTCTA
62159323 TTTTGTACTTTTTCTTCTC-ATTTTTAC
1 TTTTGTAC-TTTT-TTCTCAATTTTTAC
62159350 TTTTG-ACTTTTTTCTCAATTTTTA
1 TTTTGTACTTTTTTCTCAATTTTTA
62159374 TTTGTCGCAT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
24 5 0.22
25 11 0.48
26 2 0.09
27 5 0.22
ACGTcount: A:0.14, C:0.16, G:0.04, T:0.67
Consensus pattern (26 bp):
TTTTGTACTTTTTTCTCAATTTTTAC
Found at i:62160490 original size:10 final size:11
Alignment explanation
Indices: 62160477--62160527 Score: 52
Period size: 12 Copynumber: 4.6 Consensus size: 11
62160467 AACTAAGATT
62160477 AATAAAATA-A
1 AATAAAATATA
*
62160487 AATAAACAAATA
1 AATAAA-ATATA
*
62160499 AA-AATATATA
1 AATAAAATATA
62160509 AATATAAATATA
1 AATA-AAATATA
62160521 AATAAAA
1 AATAAAA
62160528 ATGAAACAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 7
0.75 0.09 0.16
Matches are distributed among these distances:
10 12 0.36
11 8 0.24
12 13 0.39
ACGTcount: A:0.75, C:0.02, G:0.00, T:0.24
Consensus pattern (11 bp):
AATAAAATATA
Found at i:62163918 original size:28 final size:28
Alignment explanation
Indices: 62163887--62163958 Score: 99
Period size: 28 Copynumber: 2.6 Consensus size: 28
62163877 TTGATATTTT
*
62163887 GCACACTAAGTGTCATTCTCAATATCTC
1 GCACACTAAGTGCCATTCTCAATATCTC
*
62163915 GCACACTAAGTGCCATTCTCAATATTTC
1 GCACACTAAGTGCCATTCTCAATATCTC
* * *
62163943 GTACACTGAGTACCAT
1 GCACACTAAGTGCCAT
62163959 ATTTGATTGC
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 39 1.00
ACGTcount: A:0.29, C:0.28, G:0.12, T:0.31
Consensus pattern (28 bp):
GCACACTAAGTGCCATTCTCAATATCTC
Found at i:62171134 original size:42 final size:42
Alignment explanation
Indices: 62171017--62171136 Score: 107
Period size: 42 Copynumber: 2.9 Consensus size: 42
62171007 TCACATCGAA
* * ** *
62171017 GCCATATCCTAGATATGGTCTTATAC-GAAGTCTCATTTTGAC
1 GCCATATCCCAGATATGGTCTTATACAGAA-TCTCATATCAAT
* * * ** * *
62171059 GCTATGTCCTAGAGGTGGTCTTACACAAAATCTCATATCAAT
1 GCCATATCCCAGATATGGTCTTATACAGAATCTCATATCAAT
*
62171101 GCCATATCCCAGATATGGTCTTATACAGGATCTCAT
1 GCCATATCCCAGATATGGTCTTATACAGAATCTCAT
62171137 CAACCCAAAT
Statistics
Matches: 59, Mismatches: 18, Indels: 2
0.75 0.23 0.03
Matches are distributed among these distances:
42 57 0.97
43 2 0.03
ACGTcount: A:0.28, C:0.23, G:0.17, T:0.33
Consensus pattern (42 bp):
GCCATATCCCAGATATGGTCTTATACAGAATCTCATATCAAT
Found at i:62178203 original size:75 final size:76
Alignment explanation
Indices: 62178114--62178272 Score: 239
Period size: 76 Copynumber: 2.1 Consensus size: 76
62178104 TCATATTTTA
*
62178114 AATTTAGAGTTGGATTTGTTTCATTTTT-AGCTCTAGAATTTAGATTTTAAGTTTTAATAAATTT
1 AATTTAGAGCTGGATTTGTTTCATTTTTAAGCTCTAGAATTTAGATTTTAAGTTTTAATAAATTT
*
62178178 AATTAGATTTT
66 AATTAGATGTT
* * * * *
62178189 AGTTTAGAGCTGGATTTGTTTCATTTTTAAGTTGTAGAATTTAGATTTTAAGTTTTCATAGATTT
1 AATTTAGAGCTGGATTTGTTTCATTTTTAAGCTCTAGAATTTAGATTTTAAGTTTTAATAAATTT
*
62178254 CATTAGATGTT
66 AATTAGATGTT
62178265 AATTTAGA
1 AATTTAGA
62178273 AATTAGATTA
Statistics
Matches: 74, Mismatches: 9, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
75 26 0.35
76 48 0.65
ACGTcount: A:0.30, C:0.04, G:0.16, T:0.50
Consensus pattern (76 bp):
AATTTAGAGCTGGATTTGTTTCATTTTTAAGCTCTAGAATTTAGATTTTAAGTTTTAATAAATTT
AATTAGATGTT
Found at i:62179363 original size:388 final size:388
Alignment explanation
Indices: 62178647--62179815 Score: 2293
Period size: 388 Copynumber: 3.0 Consensus size: 388
62178637 CTGTAGGATA
62178647 TATTTTTTAGATATATAGGAATGCTACAATTTTATACGAAATATTACTCTCAAATCCAAATTTTG
1 TATTTTTTAGATATATAGGAATGCTACAATTTTATACGAAATATTACTCTCAAATCCAAATTTTG
62178712 AAAATAAGACCAATATTTAGTTTTAATGATTTTTTCTAAATTCATTTTAGGATTAGTTTTAATGA
66 AAAATAAGACCAATATTTAGTTTTAATGATTTTTTCTAAATTCATTTTAGGATTAGTTTTAATGA
*
62178777 TTTTAGGCAACATGTGCTCCAATAGGTTTCCATGTCTAGTTTGCTATTGCTAGGTACTTTTCTAG
131 TTTTAGCCAACATGTGCTCCAATAGGTTTCCATGTCTAGTTTGCTATTGCTAGGTACTTTTCTAG
62178842 CACATTGTGACAACTTTACATGTGCATAAATCCTTAAATGGATTTAAGGTAAATTTAACTTGAGT
196 CACATTGTGACAACTTTACATGTGCATAAATCCTTAAATGGATTTAAGGTAAATTTAACTTGAGT
62178907 CTTATTTAATGTATTGTTAGTCTAAACAATCACATTTATATCTCTATTTTTGGGAGTCAATCTTA
261 CTTATTTAATGTATTGTTAGTCTAAACAATCACATTTATATCTCTATTTTTGGGAGTCAATCTTA
62178972 CTTCGACAATTAAGACAAACTATCTCCCTCATTAAGCTTATAGACAACATAATAGTCTCATAT
326 CTTCGACAATTAAGACAAACTATCTCCCTCATTAAGCTTATAGACAACATAATAGTCTCATAT
62179035 TATTTTTTAGATATATAGGAATGCTACAATTTTATACGAAATATTACTCTCAAATCCAAATTTTG
1 TATTTTTTAGATATATAGGAATGCTACAATTTTATACGAAATATTACTCTCAAATCCAAATTTTG
62179100 AAAATAAGACCAATATTTAGTTTTAATGATTTTTTCTAAATTCATTTTAGGATTAGTTTTAATGA
66 AAAATAAGACCAATATTTAGTTTTAATGATTTTTTCTAAATTCATTTTAGGATTAGTTTTAATGA
62179165 TTTTAGCCAACATGTGCTCCAATAGGTTTCCATGTCTAGTTTGCTATTGCTAGGTACTTTTCTAG
131 TTTTAGCCAACATGTGCTCCAATAGGTTTCCATGTCTAGTTTGCTATTGCTAGGTACTTTTCTAG
*
62179230 CACATTGTGACAACTTTACATGTGCATAAATCCTTAAATGGATTTCAGGTAAATTTAACTTGAGT
196 CACATTGTGACAACTTTACATGTGCATAAATCCTTAAATGGATTTAAGGTAAATTTAACTTGAGT
*
62179295 CTTATTTAATGTATTGTTAGTCTAAACAATTACATTTATATCTCTATTTTTGGGAGTCAATCTTA
261 CTTATTTAATGTATTGTTAGTCTAAACAATCACATTTATATCTCTATTTTTGGGAGTCAATCTTA
62179360 CTTCGACAATTAAGACAAACTATCTCCCTCATTAAGCTTATAGACAACATAATAGTCTCATAT
326 CTTCGACAATTAAGACAAACTATCTCCCTCATTAAGCTTATAGACAACATAATAGTCTCATAT
*
62179423 TATTTTTTAGATATATAAGAATGCTACAATTTTATACGAAATATTACTCTCAAATCCAAATTTTG
1 TATTTTTTAGATATATAGGAATGCTACAATTTTATACGAAATATTACTCTCAAATCCAAATTTTG
62179488 AAAATAAGACCAATATTTAGTTTTAATGATTTTTTCTAAATTCATTTTAGGATTAGTTTTAATGA
66 AAAATAAGACCAATATTTAGTTTTAATGATTTTTTCTAAATTCATTTTAGGATTAGTTTTAATGA
*
62179553 TTTTAGCCAACATGTGCTCCAATAGGTTTCCATGTCTAGTTTGCTATTGCTAGTTACTTTTCTAG
131 TTTTAGCCAACATGTGCTCCAATAGGTTTCCATGTCTAGTTTGCTATTGCTAGGTACTTTTCTAG
62179618 CACATTGTGACAACTTTACATGTGCATAAATCCTTAAATGGATTTAAGGTAAATTTAACTTGAGT
196 CACATTGTGACAACTTTACATGTGCATAAATCCTTAAATGGATTTAAGGTAAATTTAACTTGAGT
62179683 CTTATTTAATGTATTGTTAGTCTAAACAATCACATTTATATCTCTATTTTTGGGAGTCAATCTTA
261 CTTATTTAATGTATTGTTAGTCTAAACAATCACATTTATATCTCTATTTTTGGGAGTCAATCTTA
62179748 CTTCGACAATTAAGACAAACTATCTCCCTCATTAAGCTTATAGACAACATAATAGTCTCATAT
326 CTTCGACAATTAAGACAAACTATCTCCCTCATTAAGCTTATAGACAACATAATAGTCTCATAT
62179811 TATTT
1 TATTT
62179816 GAATCATTTG
Statistics
Matches: 774, Mismatches: 7, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
388 774 1.00
ACGTcount: A:0.33, C:0.15, G:0.12, T:0.41
Consensus pattern (388 bp):
TATTTTTTAGATATATAGGAATGCTACAATTTTATACGAAATATTACTCTCAAATCCAAATTTTG
AAAATAAGACCAATATTTAGTTTTAATGATTTTTTCTAAATTCATTTTAGGATTAGTTTTAATGA
TTTTAGCCAACATGTGCTCCAATAGGTTTCCATGTCTAGTTTGCTATTGCTAGGTACTTTTCTAG
CACATTGTGACAACTTTACATGTGCATAAATCCTTAAATGGATTTAAGGTAAATTTAACTTGAGT
CTTATTTAATGTATTGTTAGTCTAAACAATCACATTTATATCTCTATTTTTGGGAGTCAATCTTA
CTTCGACAATTAAGACAAACTATCTCCCTCATTAAGCTTATAGACAACATAATAGTCTCATAT
Found at i:62183339 original size:13 final size:14
Alignment explanation
Indices: 62183312--62183341 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
62183302 CATTAAGTTA
62183312 ATATAATATAAAAC
1 ATATAATATAAAAC
62183326 ATATAATA-AAAAC
1 ATATAATATAAAAC
62183339 ATA
1 ATA
62183342 AGTGTTCATA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.50
14 8 0.50
ACGTcount: A:0.67, C:0.07, G:0.00, T:0.27
Consensus pattern (14 bp):
ATATAATATAAAAC
Found at i:62183762 original size:45 final size:42
Alignment explanation
Indices: 62183700--62183920 Score: 205
Period size: 45 Copynumber: 5.1 Consensus size: 42
62183690 TAGGATTTCA
*
62183700 ATATGTGATTTCATGTAAGACCACGTCTGGGACGTTGGCATCAAT
1 ATATGTGATTTCGTGTAAGACCACGTCTGGGACGTTGGCAT---T
*
62183745 ATATGTGATTTTGTGTAAGACCACGTCTGGGACGTTGGCATCGAT
1 ATATGTGATTTCGTGTAAGACCACGTCTGGGACGTTGGCAT---T
* * * * ** *
62183790 ATAAGTGGTTACGTGTAAGACCATGTCTGGGATATCGGCATT
1 ATATGTGATTTCGTGTAAGACCACGTCTGGGACGTTGGCATT
*
62183832 ATATTTGATTT-GTGTAAGACC-CTGTCTGGGACAG-TGGCATT
1 ATATGTGATTTCGTGTAAGACCAC-GTCTGGGAC-GTTGGCATT
* ** *
62183873 GATATGAGATAACATGTAAGACCACGTCTGGGACGTTGGCATT
1 -ATATGTGATTTCGTGTAAGACCACGTCTGGGACGTTGGCATT
*
62183916 GTATG
1 ATATG
62183921 ATATATGTGA
Statistics
Matches: 145, Mismatches: 25, Indels: 15
0.78 0.14 0.08
Matches are distributed among these distances:
41 24 0.17
42 20 0.14
43 25 0.17
44 1 0.01
45 75 0.52
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.32
Consensus pattern (42 bp):
ATATGTGATTTCGTGTAAGACCACGTCTGGGACGTTGGCATT
Found at i:62185663 original size:19 final size:19
Alignment explanation
Indices: 62185639--62185676 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
62185629 TGAATATTAA
62185639 CATATTGGTTTAGTTATGT
1 CATATTGGTTTAGTTATGT
*
62185658 CATATTGGTTTGGTTATGT
1 CATATTGGTTTAGTTATGT
62185677 GAATTTAATA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.18, C:0.05, G:0.24, T:0.53
Consensus pattern (19 bp):
CATATTGGTTTAGTTATGT
Found at i:62189274 original size:25 final size:27
Alignment explanation
Indices: 62189233--62189288 Score: 73
Period size: 26 Copynumber: 2.1 Consensus size: 27
62189223 TCCTCTCTCG
62189233 AGCCATATAATAGGAAA-CTCACAAAA
1 AGCCATATAATAGGAAAGCTCACAAAA
*
62189259 AGCCAT-TAATTA-GAAAGCTCACAAAG
1 AGCCATATAA-TAGGAAAGCTCACAAAA
62189285 AGCC
1 AGCC
62189289 TATCGGGAAG
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
25 7 0.26
26 20 0.74
ACGTcount: A:0.48, C:0.21, G:0.14, T:0.16
Consensus pattern (27 bp):
AGCCATATAATAGGAAAGCTCACAAAA
Found at i:62189366 original size:26 final size:26
Alignment explanation
Indices: 62189337--62189397 Score: 86
Period size: 26 Copynumber: 2.3 Consensus size: 26
62189327 ATAAGAGCCA
* *
62189337 TAATCAGGAAGTTCACAAAGAACTTT
1 TAATCAGGAAGCTCACAAAGAACCTT
* *
62189363 TAATTAGGAAGCTCACAAAGAGCCTT
1 TAATCAGGAAGCTCACAAAGAACCTT
62189389 TAATCAGGA
1 TAATCAGGA
62189398 GCTTCGGATA
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.41, C:0.16, G:0.18, T:0.25
Consensus pattern (26 bp):
TAATCAGGAAGCTCACAAAGAACCTT
Found at i:62193245 original size:21 final size:21
Alignment explanation
Indices: 62193221--62193262 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
62193211 AAATGATAAG
62193221 TTTAATTTCAAAAACTTTGGT
1 TTTAATTTCAAAAACTTTGGT
*
62193242 TTTAATTTTAAAAACTTTGGT
1 TTTAATTTCAAAAACTTTGGT
62193263 AGAAATCCTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.33, C:0.07, G:0.10, T:0.50
Consensus pattern (21 bp):
TTTAATTTCAAAAACTTTGGT
Found at i:62216703 original size:47 final size:47
Alignment explanation
Indices: 62216561--62216705 Score: 209
Period size: 47 Copynumber: 3.1 Consensus size: 47
62216551 CCCTTCGGGA
* * * * * *
62216561 CTTATCACATTTATGCACTTTCACATTCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
***
62216608 CCCGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
62216655 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
62216702 CTTA
1 CTTA
62216706 CTATCATTTC
Statistics
Matches: 86, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
47 86 1.00
ACGTcount: A:0.26, C:0.32, G:0.10, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:62216899 original size:47 final size:47
Alignment explanation
Indices: 62216821--62217106 Score: 437
Period size: 47 Copynumber: 6.1 Consensus size: 47
62216811 CCCTTCGGGA
* * * * * * *
62216821 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
***
62216868 CCCGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
62216915 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
62216962 CTTATTACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
62217009 CTTATTACATATATACACTTTCGCATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
62217056 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
62217103 CTTA
1 CTTA
62217107 CTATCATTTC
Statistics
Matches: 219, Mismatches: 20, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 219 1.00
ACGTcount: A:0.28, C:0.30, G:0.10, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:62220177 original size:42 final size:42
Alignment explanation
Indices: 62220118--62220201 Score: 141
Period size: 42 Copynumber: 2.0 Consensus size: 42
62220108 TATGTAAGAA
*
62220118 AGGGTTGCAATCCTTACCTTGCATATGTACTTGATACAAAAG
1 AGGGTTGCAATCCTTACCTTACATATGTACTTGATACAAAAG
* *
62220160 AGGGTTGCAATGCTTACCTTACGTATGTACTTGATACAAAAG
1 AGGGTTGCAATCCTTACCTTACATATGTACTTGATACAAAAG
62220202 TGTTTGAAAC
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
42 39 1.00
ACGTcount: A:0.31, C:0.18, G:0.20, T:0.31
Consensus pattern (42 bp):
AGGGTTGCAATCCTTACCTTACATATGTACTTGATACAAAAG
Found at i:62229545 original size:40 final size:39
Alignment explanation
Indices: 62229509--62229684 Score: 174
Period size: 40 Copynumber: 4.4 Consensus size: 39
62229499 ATATCCGGAC
* *
62229509 TAAGATCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGT
1 TAAG-TCCGAAGGCATTCGTGCGAGATACTAAATCCGGGT
* * *
62229549 TAAGTCCTGAAGGCATTCGTGCGAGTTATTAAAGCCGGGT
1 TAAGTCC-GAAGGCATTCGTGCGAGATACTAAATCCGGGT
* ** *
62229589 TAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCTGGT
1 TAAGT-CCGAAGGCATTCGTGCGAGATACTAAATCCGGGT
* * * *
62229629 TATGTCCCGAAGGCATT-GTGTGAGTTACTAAATCCGGGC
1 TAAGT-CCGAAGGCATTCGTGCGAGATACTAAATCCGGGT
*
62229668 TATGTCCCGAAGGCATT
1 TAAGT-CCGAAGGCATT
62229685 TGAACGAGGA
Statistics
Matches: 120, Mismatches: 14, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
39 37 0.31
40 81 0.68
41 2 0.02
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (39 bp):
TAAGTCCGAAGGCATTCGTGCGAGATACTAAATCCGGGT
Found at i:62229611 original size:80 final size:79
Alignment explanation
Indices: 62229462--62229684 Score: 214
Period size: 80 Copynumber: 2.8 Consensus size: 79
62229452 GTGAATGCTG
* * * ** * * * * *
62229462 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGCGAATATATCCGGACTAAGAT-CCGAAGGCCTT
1 TCCGGGTTAAGTCCCGAAGGCATTGTGC-GAGTTACTAAAGCCGGGCTAAG-TCCCGAAGGCATT
*
62229526 TGTGCGAGATACTAAA
64 CGTGCGAGATACTAAA
* * *
62229542 TCCGGGTTAAGTCCTGAAGGCATTCGTGCGAGTTATTAAAGCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTTACTAAAGCCGGGCTAAGTCCCGAAGGCATTC
* **
62229607 GTGCGAGTTGTTAAA
65 GTGCGAGATACTAAA
* * * * *
62229622 TCCTGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAATCCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAAGCCGGGCTAAGTCCCGAAGGCATT
62229685 TGAACGAGGA
Statistics
Matches: 117, Mismatches: 24, Indels: 5
0.80 0.16 0.03
Matches are distributed among these distances:
79 35 0.30
80 78 0.67
81 4 0.03
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAAGCCGGGCTAAGTCCCGAAGGCATTCG
TGCGAGATACTAAA
Found at i:62236972 original size:22 final size:22
Alignment explanation
Indices: 62236942--62236985 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
62236932 TTTGGTATTT
62236942 GGGAATTGGTACGAAATGGTAA
1 GGGAATTGGTACGAAATGGTAA
* *
62236964 GGGATTTGGTATGAAATGGTAA
1 GGGAATTGGTACGAAATGGTAA
62236986 TGGTTCAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.34, C:0.02, G:0.36, T:0.27
Consensus pattern (22 bp):
GGGAATTGGTACGAAATGGTAA
Found at i:62241946 original size:22 final size:22
Alignment explanation
Indices: 62241916--62241959 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
62241906 TTTGGTATTT
62241916 GGGAATTGGTACGAAATGGTAA
1 GGGAATTGGTACGAAATGGTAA
*
62241938 GGGATTTGGTACGAAATGGTAA
1 GGGAATTGGTACGAAATGGTAA
62241960 TGGTTCAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.34, C:0.05, G:0.36, T:0.25
Consensus pattern (22 bp):
GGGAATTGGTACGAAATGGTAA
Found at i:62250965 original size:34 final size:35
Alignment explanation
Indices: 62250909--62251007 Score: 107
Period size: 34 Copynumber: 2.9 Consensus size: 35
62250899 ACTTGCATCT
* * *
62250909 CTAATACTG-TATTGA-ATTGGGCTAAGGCCTACA
1 CTAATACTGCTACTGATAATGGGCTAAGGCCCACA
* *
62250942 CTACTACTGTTACTG-TAATGGGCTAAGGCCCACA
1 CTAATACTGCTACTGATAATGGGCTAAGGCCCACA
* *
62250976 CTAATATTGCTACTGATAA-GGGCTTAGGCCCA
1 CTAATACTGCTACTGATAATGGGCTAAGGCCCA
62251008 AACTGTTTAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
33 8 0.15
34 44 0.80
35 3 0.05
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.28
Consensus pattern (35 bp):
CTAATACTGCTACTGATAATGGGCTAAGGCCCACA
Found at i:62262593 original size:13 final size:13
Alignment explanation
Indices: 62262575--62262599 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
62262565 CAATTTAGTG
62262575 TCACATGGCCATA
1 TCACATGGCCATA
62262588 TCACATGGCCAT
1 TCACATGGCCAT
62262600 GTGGTCAATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.28, C:0.32, G:0.16, T:0.24
Consensus pattern (13 bp):
TCACATGGCCATA
Found at i:62264200 original size:40 final size:40
Alignment explanation
Indices: 62264152--62264378 Score: 418
Period size: 40 Copynumber: 5.7 Consensus size: 40
62264142 ACAAACACAT
*
62264152 TTGCCTTCGGGTCTTAACCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
62264192 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAG
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
62264232 TTGCCTTCGGGTCTTAGCCCGGATACATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
62264272 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
62264312 TTGCCTTCGGGTCTTAGCCCGGATATATCATCTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
62264352 TTGCCTTCGGGTCTTAGCCCGGATATA
1 TTGCCTTCGGGTCTTAGCCCGGATATA
62264379 ATCCAATGTT
Statistics
Matches: 181, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 181 1.00
ACGTcount: A:0.21, C:0.28, G:0.21, T:0.30
Consensus pattern (40 bp):
TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
Found at i:62277242 original size:55 final size:54
Alignment explanation
Indices: 62277133--62277367 Score: 216
Period size: 55 Copynumber: 4.4 Consensus size: 54
62277123 CATTAGGGTT
* * *
62277133 TAAGAATACCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTT-TCTAAGG
1 TAAGGATACCATGTAAGACCATGCCAAGACATGGC-ATTGGTAA-GTTCTATAAGG
* * *
62277188 TAAGGATATCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTACTATAAGG
1 TAAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTT-CTATAAGG
* * * * *
62277243 CAAAGG-TCCCATGTAAGACCATGCCAAGGCATTGCATTGGTGAGTTC-ATAAGG
1 -TAAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCTATAAGG
* * ** * * *
62277296 CAATGATACCATGTAAGACCATATCGAGACATGGCAATGGTAAGTT-T-CAA--
1 TAAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCTATAAGG
62277346 -AAGGATACCATGTAAGACCATG
1 TAAGGATACCATGTAAGACCATG
62277368 AGAAGTCATG
Statistics
Matches: 148, Mismatches: 27, Indels: 16
0.77 0.14 0.08
Matches are distributed among these distances:
49 20 0.14
52 5 0.03
53 41 0.28
54 8 0.05
55 70 0.47
56 4 0.03
ACGTcount: A:0.36, C:0.17, G:0.23, T:0.24
Consensus pattern (54 bp):
TAAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCTATAAGG
Found at i:62277340 original size:108 final size:110
Alignment explanation
Indices: 62277141--62277341 Score: 291
Period size: 108 Copynumber: 1.8 Consensus size: 110
62277131 TTTAAGAATA
* *
62277141 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGTAAGGATATCATGTAAGA
1 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGATACCATGTAAGA
* *
62277206 CCATGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTC
66 CCATATCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
* * *
62277251 CCATGTAAGACCATGCCAAGGCATTGC-ATTGGTGA-G-TTCATAAGGCAATGATACCATGTAAG
1 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTC-TAAGGCAAGGATACCATGTAAG
* *
62277313 ACCATATCGAGACATGGCAATGGTAAGTT
65 ACCATATCAAGACATGGCAATGATAAGTT
62277342 TCAAAAGGAT
Statistics
Matches: 81, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
107 3 0.04
108 45 0.56
109 7 0.09
110 26 0.32
ACGTcount: A:0.34, C:0.17, G:0.24, T:0.24
Consensus pattern (110 bp):
CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGATACCATGTAAGA
CCATATCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
Found at i:62284953 original size:55 final size:55
Alignment explanation
Indices: 62284845--62285024 Score: 154
Period size: 55 Copynumber: 3.3 Consensus size: 55
62284835 ATTAGGGTTT
* * *
62284845 AAGGATACCATGTAAGACCATGCCAAGGCATGACAATTGGTAAGGTTTCTAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGACAATTGATAAGGTTTATAAGGC
* * * * *
62284900 AAGGATATCATGTTAGACCATGTCAAGACATGTC-ATTGATAA-GTTACTATAAGGTA
1 AAGGATACCATGTAAGACCATGCCAAGACATGACAATTGATAAGGTT--TATAAGG-C
* * * * * **
62284956 AAGG-TCCCATGTAAGACCATGCCAAGGCATGGC-ATTGGTGA-GTTCGTAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGACAATTGATAAGGTTTATAAGGC
*
62285008 AAGTATACCATGTAAGA
1 AAGGATACCATGTAAGA
62285025 ACATATCGAG
Statistics
Matches: 100, Mismatches: 21, Indels: 10
0.76 0.16 0.08
Matches are distributed among these distances:
52 3 0.03
53 19 0.19
54 7 0.07
55 67 0.67
56 4 0.04
ACGTcount: A:0.34, C:0.17, G:0.24, T:0.24
Consensus pattern (55 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGACAATTGATAAGGTTTATAAGGC
Found at i:62285051 original size:108 final size:110
Alignment explanation
Indices: 62284852--62285052 Score: 273
Period size: 108 Copynumber: 1.8 Consensus size: 110
62284842 TTTAAGGATA
* *
62284852 CCATGTAAGACCATGCCAAGGCATGACAATTGGTAAGGTTTCTAAGGCAAGGATATCATGTTAGA
1 CCATGTAAGACCATGCCAAGGCATGACAATTGGTAAGGTTTCTAAGGCAAGGATACCATGTAAGA
* * * *
62284917 CCATGTCAAGACATGTCATTGATAAGTTACTATAAGGTAAAGGTC
66 ACATATCAAGACATGGCAATGATAAGTTACTATAAGGTAAAGGTC
* * *
62284962 CCATGTAAGACCATGCCAAGGCATGGC-ATTGGTGA-G-TTCGTAAGGCAAGTATACCATGTAAG
1 CCATGTAAGACCATGCCAAGGCATGACAATTGGTAAGGTTTC-TAAGGCAAGGATACCATGTAAG
* *
62285024 AACATATCGAGACATGGCAATGGTAAGTT
65 AACATATCAAGACATGGCAATGATAAGTT
62285053 TCAAAAGGAT
Statistics
Matches: 79, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
107 3 0.04
108 43 0.54
109 7 0.09
110 26 0.33
ACGTcount: A:0.34, C:0.17, G:0.24, T:0.25
Consensus pattern (110 bp):
CCATGTAAGACCATGCCAAGGCATGACAATTGGTAAGGTTTCTAAGGCAAGGATACCATGTAAGA
ACATATCAAGACATGGCAATGATAAGTTACTATAAGGTAAAGGTC
Found at i:62285314 original size:16 final size:16
Alignment explanation
Indices: 62285293--62285323 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
62285283 ATAAATTTGA
62285293 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
62285309 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
62285324 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:62287539 original size:15 final size:14
Alignment explanation
Indices: 62287519--62287551 Score: 57
Period size: 14 Copynumber: 2.3 Consensus size: 14
62287509 CCAGTAAAAC
62287519 ATTTTTCGGAAAATG
1 ATTTTT-GGAAAATG
62287534 ATTTTTGGAAAATG
1 ATTTTTGGAAAATG
62287548 ATTT
1 ATTT
62287552 ACTTTTCTAG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 12 0.67
15 6 0.33
ACGTcount: A:0.33, C:0.03, G:0.18, T:0.45
Consensus pattern (14 bp):
ATTTTTGGAAAATG
Found at i:62289027 original size:32 final size:32
Alignment explanation
Indices: 62288998--62289060 Score: 101
Period size: 32 Copynumber: 2.0 Consensus size: 32
62288988 TCCAACAAGC
62288998 TTGAA-ACATAATAAATTCAAAATCTAACAAA
1 TTGAAGACATAATAAATTCAAAATCTAACAAA
* *
62289029 TTTAAGACATAATAATTTCAAAATCTAACAAA
1 TTGAAGACATAATAAATTCAAAATCTAACAAA
62289061 CTAATTTCAA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
31 4 0.14
32 25 0.86
ACGTcount: A:0.56, C:0.13, G:0.03, T:0.29
Consensus pattern (32 bp):
TTGAAGACATAATAAATTCAAAATCTAACAAA
Found at i:62289525 original size:41 final size:41
Alignment explanation
Indices: 62289468--62289549 Score: 164
Period size: 41 Copynumber: 2.0 Consensus size: 41
62289458 ATTTTCAATG
62289468 ATGAATGACGAAGATTAAAGAGTTCCTTTTCAATTTCTAGC
1 ATGAATGACGAAGATTAAAGAGTTCCTTTTCAATTTCTAGC
62289509 ATGAATGACGAAGATTAAAGAGTTCCTTTTCAATTTCTAGC
1 ATGAATGACGAAGATTAAAGAGTTCCTTTTCAATTTCTAGC
62289550 CCCTGAGCAC
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 41 1.00
ACGTcount: A:0.34, C:0.15, G:0.17, T:0.34
Consensus pattern (41 bp):
ATGAATGACGAAGATTAAAGAGTTCCTTTTCAATTTCTAGC
Found at i:62293938 original size:42 final size:42
Alignment explanation
Indices: 62293890--62293996 Score: 115
Period size: 43 Copynumber: 2.5 Consensus size: 42
62293880 GAGATTACGA
* * ****
62293890 GTAAGACCATATCCGGGATATGACATCGATATGAGATTTTGT
1 GTAAGACCATATCTGGGATATGACATCGATATGAAATCCCAT
* * * *
62293932 GTAAGACAATAGCTGGGCTATTGTCATCGATATGAAATCCCAT
1 GTAAGACCATATCTGGGATA-TGACATCGATATGAAATCCCAT
62293975 GTAAGACCATATCTGGGATATG
1 GTAAGACCATATCTGGGATATG
62293997 GCATTGGTAT
Statistics
Matches: 51, Mismatches: 13, Indels: 2
0.77 0.20 0.03
Matches are distributed among these distances:
42 18 0.35
43 33 0.65
ACGTcount: A:0.32, C:0.16, G:0.23, T:0.29
Consensus pattern (42 bp):
GTAAGACCATATCTGGGATATGACATCGATATGAAATCCCAT
Found at i:62295457 original size:44 final size:44
Alignment explanation
Indices: 62295340--62295445 Score: 133
Period size: 43 Copynumber: 2.4 Consensus size: 44
62295330 TATGTGTTTT
* *
62295340 CGTGTAAGACCATGTCTGGGATGTTGGCATCGACTTATGATTTA
1 CGTGTAAGACCATGTCTGGGAAGTTGGCATCAACTTATGATTTA
** * * * *
62295384 TAT-TAAGAGCACGTCCGGGAGGTTGGCATCAACTTATGATTTA
1 CGTGTAAGACCATGTCTGGGAAGTTGGCATCAACTTATGATTTA
62295427 CGTGTAAGACCATGTCTGG
1 CGTGTAAGACCATGTCTGG
62295446 AACAGTGGCA
Statistics
Matches: 49, Mismatches: 12, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
43 36 0.73
44 13 0.27
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.31
Consensus pattern (44 bp):
CGTGTAAGACCATGTCTGGGAAGTTGGCATCAACTTATGATTTA
Found at i:62296163 original size:16 final size:16
Alignment explanation
Indices: 62296142--62296175 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
62296132 ATGTGCAAAT
62296142 TTGAGAAATTGGTAAG
1 TTGAGAAATTGGTAAG
62296158 TTGAGAAATTGGTAAG
1 TTGAGAAATTGGTAAG
62296174 TT
1 TT
62296176 TATAACATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.35, C:0.00, G:0.29, T:0.35
Consensus pattern (16 bp):
TTGAGAAATTGGTAAG
Found at i:62296491 original size:32 final size:32
Alignment explanation
Indices: 62296451--62296516 Score: 123
Period size: 32 Copynumber: 2.1 Consensus size: 32
62296441 AGACACGGGC
*
62296451 GTCTGTCTCAACTGTGTGCGGCACACTGTCAT
1 GTCTGTCTCAACTGTGTACGGCACACTGTCAT
62296483 GTCTGTCTCAACTGTGTACGGCACACTGTCAT
1 GTCTGTCTCAACTGTGTACGGCACACTGTCAT
62296515 GT
1 GT
62296517 TGCACGACCA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.17, C:0.27, G:0.24, T:0.32
Consensus pattern (32 bp):
GTCTGTCTCAACTGTGTACGGCACACTGTCAT
Found at i:62304403 original size:42 final size:42
Alignment explanation
Indices: 62304344--62304462 Score: 141
Period size: 43 Copynumber: 2.8 Consensus size: 42
62304334 TAGGGTTAGT
62304344 TGAGATTACGTGTAAGACCATAATTGGGATATGGAATCGATA
1 TGAGATTACGTGTAAGACCATAATTGGGATATGGAATCGATA
* ** * *
62304386 TGAGATTTCGTGTAAGACCATAGCTGGGATATTGGCATTGATA
1 TGAGATTACGTGTAAGACCATAATTGGGATA-TGGAATCGATA
** *
62304429 TGAGATCCCATGTAAGACCAT-ATCTGGGATATGG
1 TGAGATTACGTGTAAGACCATAAT-TGGGATATGG
62304463 CGTTGGTATG
Statistics
Matches: 65, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
42 31 0.48
43 34 0.52
ACGTcount: A:0.31, C:0.13, G:0.27, T:0.29
Consensus pattern (42 bp):
TGAGATTACGTGTAAGACCATAATTGGGATATGGAATCGATA
Found at i:62304593 original size:20 final size:20
Alignment explanation
Indices: 62304555--62304593 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
62304545 TTTAAGTTGG
*
62304555 GAAAGACTATAGTATATTGT
1 GAAAGACTATAGTAAATTGT
* *
62304575 GAAAGATTATGGTAAATTG
1 GAAAGACTATAGTAAATTG
62304594 CAAGTTGGTA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.41, C:0.03, G:0.23, T:0.33
Consensus pattern (20 bp):
GAAAGACTATAGTAAATTGT
Found at i:62304773 original size:16 final size:15
Alignment explanation
Indices: 62304741--62304774 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
62304731 ACAAAGATAT
*
62304741 TTATGTTAATTTATG
1 TTATGTTAATGTATG
62304756 TTATGTTAAATGTATG
1 TTATGTT-AATGTATG
62304772 TTA
1 TTA
62304775 AAGTGTGTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 7 0.41
16 10 0.59
ACGTcount: A:0.29, C:0.00, G:0.15, T:0.56
Consensus pattern (15 bp):
TTATGTTAATGTATG
Found at i:62306844 original size:16 final size:15
Alignment explanation
Indices: 62306820--62306849 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
62306810 AACTGTTTTA
62306820 TTACAAATTTCACTC
1 TTACAAATTTCACTC
62306835 TTACATAATTTCACT
1 TTACA-AATTTCACT
62306850 TACTCCATTC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.33, C:0.23, G:0.00, T:0.43
Consensus pattern (15 bp):
TTACAAATTTCACTC
Found at i:62307176 original size:51 final size:50
Alignment explanation
Indices: 62307060--62307247 Score: 209
Period size: 50 Copynumber: 3.8 Consensus size: 50
62307050 ATCTGATACG
* * ** *
62307060 CATAGTAGCCTGCACTTAGTATTACACATGCGACC-AACAATCTGGTACA
1 CATAGTAGCCTGCACTTAGTACTACACACGCGACCTAATTATCTGGTAAA
* * * * **
62307109 GATAGTAGCCTGCACTTAGTACTACACACGTGA-TTGAAGTTGTCTGGTATG
1 CATAGTAGCCTGCACTTAGTACTACACACGCGACCT-AA-TTATCTGGTAAA
*
62307160 CATAGTAGCCTGCACTTAGTACTACACATGCGACCTAATTATCTGGTAAA
1 CATAGTAGCCTGCACTTAGTACTACACACGCGACCTAATTATCTGGTAAA
* **
62307210 CGTAGTAGCCTGCACTTAGTACTACACACATGACCTAA
1 CATAGTAGCCTGCACTTAGTACTACACACGCGACCTAA
62307248 AACCATCTTA
Statistics
Matches: 114, Mismatches: 21, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
49 29 0.25
50 45 0.39
51 39 0.34
52 1 0.01
ACGTcount: A:0.30, C:0.24, G:0.19, T:0.27
Consensus pattern (50 bp):
CATAGTAGCCTGCACTTAGTACTACACACGCGACCTAATTATCTGGTAAA
Found at i:62307265 original size:101 final size:99
Alignment explanation
Indices: 62307050--62307275 Score: 249
Period size: 101 Copynumber: 2.2 Consensus size: 99
62307040 AACCGAAGCT
* * *
62307050 ATCTGATACGCATAGTAGCCTGCACTTAGTATTACACATGCGACCAACAATCTGGTACAGATAGT
1 ATCTG-TACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAACAATCTGGTAAAGATAGT
* * * ***
62307115 AGCCTGCACTTAGTACTACACACGTGATTGAAGTT
65 AGCCTGCACTTAGTACTACACACATGACTAAAACC
* ** **
62307150 GTCTGGTATGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTAATTATCTGGTAAACG-TA
1 ATCT-GTACACATAGTAGCCTGCACTTAGTACTACACATGCGACC-AACAATCTGGTAAA-GATA
62307214 GTAGCCTGCACTTAGTACTACACACATGACCTAAAACC
63 GTAGCCTGCACTTAGTACTACACACATGA-CTAAAACC
*
62307252 ATCT-TAACACATAGTAGCTTGCAC
1 ATCTGT-ACACATAGTAGCCTGCAC
62307276 ATATGTACAT
Statistics
Matches: 105, Mismatches: 16, Indels: 9
0.81 0.12 0.07
Matches are distributed among these distances:
100 41 0.39
101 57 0.54
102 7 0.07
ACGTcount: A:0.31, C:0.24, G:0.18, T:0.27
Consensus pattern (99 bp):
ATCTGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAACAATCTGGTAAAGATAGTA
GCCTGCACTTAGTACTACACACATGACTAAAACC
Found at i:62310192 original size:15 final size:15
Alignment explanation
Indices: 62310163--62310205 Score: 50
Period size: 15 Copynumber: 2.9 Consensus size: 15
62310153 TATAGATAAC
* *
62310163 AAGAAAACCAGGATT
1 AAGAAATCCAAGATT
*
62310178 AAGAAGTCCAAGATT
1 AAGAAATCCAAGATT
*
62310193 GAGAAATCCAAGA
1 AAGAAATCCAAGA
62310206 GACAATATCA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.51, C:0.14, G:0.21, T:0.14
Consensus pattern (15 bp):
AAGAAATCCAAGATT
Found at i:62315387 original size:114 final size:114
Alignment explanation
Indices: 62315187--62315414 Score: 438
Period size: 114 Copynumber: 2.0 Consensus size: 114
62315177 TACCCACATG
62315187 GGCGTGGCCCAAGCCACACGGGCGTCTGACCCTTGTTTTGATGAAAAATTTTCTAAGTGCCAAGA
1 GGCGTGGCCCAAGCCACACGGGCGTCTGACCCTTGTTTTGATGAAAAATTTTCTAAGTGCCAAGA
*
62315252 AATTTTCTAAAGTTCTCAGTTTAGTCTCGAATCACTCTTAGGTCATGTT
66 AATTTTCTAAAGTTCTCAGTTTAGTCCCGAATCACTCTTAGGTCATGTT
*
62315301 GGCGTGGCCCAAGCCACACGGGCGTCTGACCCTTGTTTTGATGAAAAATTTTGTAAGTGCCAAGA
1 GGCGTGGCCCAAGCCACACGGGCGTCTGACCCTTGTTTTGATGAAAAATTTTCTAAGTGCCAAGA
62315366 AATTTTCTAAAGTTCTCAGTTTAGTCCCGAATCACTCTTAGGTCATGTT
66 AATTTTCTAAAGTTCTCAGTTTAGTCCCGAATCACTCTTAGGTCATGTT
62315415 TTGGGCATCG
Statistics
Matches: 112, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
114 112 1.00
ACGTcount: A:0.25, C:0.22, G:0.21, T:0.32
Consensus pattern (114 bp):
GGCGTGGCCCAAGCCACACGGGCGTCTGACCCTTGTTTTGATGAAAAATTTTCTAAGTGCCAAGA
AATTTTCTAAAGTTCTCAGTTTAGTCCCGAATCACTCTTAGGTCATGTT
Found at i:62319102 original size:21 final size:21
Alignment explanation
Indices: 62319076--62319116 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
62319066 AGCACATAAT
62319076 GGTTGTTTATCTATGCATCCG
1 GGTTGTTTATCTATGCATCCG
*
62319097 GGTTGTTTATCTGTGCATCC
1 GGTTGTTTATCTATGCATCC
62319117 AGGTAGTATG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.12, C:0.20, G:0.24, T:0.44
Consensus pattern (21 bp):
GGTTGTTTATCTATGCATCCG
Found at i:62330127 original size:50 final size:48
Alignment explanation
Indices: 62329974--62330247 Score: 193
Period size: 50 Copynumber: 5.6 Consensus size: 48
62329964 TGATATGTGT
* *
62329974 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCG-GCCACATTATGAGA
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGACCCACA-GATGAGA
* * * *
62330020 GTCAGTGTAAGACCATGTCTGCGACATAGCATC-AGCCTCA-AGACCTGAAA
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGA-CC-CACAGA--TGAGA
* * *
62330070 GCTAGTGTAAGACCATGTCTGAGACATGGCATCGACACCGACAGAGGAGA
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGAC-CC-ACAGATGAGA
* * * * *
62330120 GCCAGTGTAAGACCATGTTTGGGACATGGCATCGGTCCTAATATATGAGA
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATC-GACC-CACAGATGAGA
* * * * * **
62330170 GTCAATGTAAGACCATGTCTAGGACACGGCATTGA-CTTC-GATGTATGA
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGACCCACAGATG-A-GA
* *
62330218 GTCAGTGTAAGACCATGTCTGGGATATGGC
1 GCCAGTGTAAGACCATGTCTGGGACATGGC
62330248 GTCGGCATCT
Statistics
Matches: 179, Mismatches: 34, Indels: 28
0.74 0.14 0.12
Matches are distributed among these distances:
46 14 0.08
47 14 0.08
48 35 0.20
49 3 0.02
50 105 0.59
51 5 0.03
52 3 0.02
ACGTcount: A:0.29, C:0.21, G:0.27, T:0.23
Consensus pattern (48 bp):
GCCAGTGTAAGACCATGTCTGGGACATGGCATCGACCCACAGATGAGA
Found at i:62337339 original size:95 final size:98
Alignment explanation
Indices: 62337157--62337392 Score: 286
Period size: 95 Copynumber: 2.4 Consensus size: 98
62337147 ATTTGGGTGA
* * * * *
62337157 TATGTGTGCTAGTGTAAGA-CATGTCTAGGACATGACATCAGC-CTCGAGACCTGAAAGCTAGTG
1 TATGTGT-C-AGTGTAAGACCATGTCTAGGACATGGCATCGGCACTCGACACATGAAAGCCAGTG
62337220 TAAGACCATGTCTGGGACATGGTATC-AGCTTT-T-
64 TAAGACCATGTCTGGGACATGGTATCGA-CTTTATG
* * *
62337253 TATGTGTCAGTGTAAGACCATGTCTAGGACATGGCATCGGCACT-GACAGATGAGAGCCAGTGTC
1 TATGTGTCAGTGTAAGACCATGTCTAGGACATGGCATCGGCACTCGACACATGAAAGCCAGTGTA
62337317 AGACCATGTCTGGGACATGGTATCGACTTTGATG
66 AGACCATGTCTGGGACATGGTATCGACTTT-ATG
* * * *
62337351 TATGAGCCAGTGTAAGACCATGTCTGGGATATGGCATCGGCA
1 TATGTGTCAGTGTAAGACCATGTCTAGGACATGGCATCGGCA
62337393 TCTTACCCTA
Statistics
Matches: 122, Mismatches: 12, Indels: 10
0.85 0.08 0.07
Matches are distributed among these distances:
94 9 0.07
95 64 0.52
96 10 0.08
97 1 0.01
98 38 0.31
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (98 bp):
TATGTGTCAGTGTAAGACCATGTCTAGGACATGGCATCGGCACTCGACACATGAAAGCCAGTGTA
AGACCATGTCTGGGACATGGTATCGACTTTATG
Found at i:62337377 original size:48 final size:48
Alignment explanation
Indices: 62337216--62337389 Score: 180
Period size: 48 Copynumber: 3.6 Consensus size: 48
62337206 CCTGAAAGCT
* * *
62337216 AGTGTAAGACCATGTCTGGGACATGGTATC-AGCTTT--T-TATGTGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGA-CTTTGATGTATGAGCC
* **
62337261 AGTGTAAGACCATGTCTAGGACATGGCATCGGCACTGACAGATG-A-GAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATC-G-ACT--TTGATGTATGAGCC
* *
62337311 AGTGTCAGACCATGTCTGGGACATGGTATCGACTTTGATGTATGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACTTTGATGTATGAGCC
*
62337359 AGTGTAAGACCATGTCTGGGATATGGCATCG
1 AGTGTAAGACCATGTCTGGGACATGGCATCG
62337390 GCATCTTACC
Statistics
Matches: 105, Mismatches: 14, Indels: 17
0.77 0.10 0.12
Matches are distributed among these distances:
45 28 0.27
46 4 0.04
47 3 0.03
48 37 0.35
49 1 0.01
50 30 0.29
51 2 0.02
ACGTcount: A:0.25, C:0.18, G:0.29, T:0.27
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGACTTTGATGTATGAGCC
Found at i:62340330 original size:13 final size:13
Alignment explanation
Indices: 62340308--62340340 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
62340298 AAGGGTTTGT
62340308 TTAT-TAAACTAA
1 TTATCTAAACTAA
62340320 TTATCTAAACTAA
1 TTATCTAAACTAA
*
62340333 TTAACTAA
1 TTATCTAA
62340341 TTTAATTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.39
Consensus pattern (13 bp):
TTATCTAAACTAA
Found at i:62344479 original size:14 final size:15
Alignment explanation
Indices: 62344453--62344481 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
62344443 GCAAGTATGA
62344453 CACATTAACATAAAT
1 CACATTAACATAAAT
62344468 CACATT-ACATAAAT
1 CACATTAACATAAAT
62344482 ACAACATTCA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.52, C:0.21, G:0.00, T:0.28
Consensus pattern (15 bp):
CACATTAACATAAAT
Found at i:62346849 original size:28 final size:28
Alignment explanation
Indices: 62346811--62346873 Score: 74
Period size: 28 Copynumber: 2.3 Consensus size: 28
62346801 TGATGGACAA
* *
62346811 AGAG-GAAAGAGGACGACTACTGTGAAG
1 AGAGTGAAAGAGAACAACTACTGTGAAG
** *
62346838 AGAGTGAAAGAGAACAACTGTTGTGATG
1 AGAGTGAAAGAGAACAACTACTGTGAAG
62346866 AGAGTGAA
1 AGAGTGAA
62346874 GGAAAATGGA
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
27 4 0.13
28 26 0.87
ACGTcount: A:0.41, C:0.08, G:0.35, T:0.16
Consensus pattern (28 bp):
AGAGTGAAAGAGAACAACTACTGTGAAG
Found at i:62353497 original size:21 final size:21
Alignment explanation
Indices: 62353473--62353607 Score: 92
Period size: 21 Copynumber: 6.4 Consensus size: 21
62353463 TCTCACAAGC
* *
62353473 TTCTGTTTAACTCATATGAGT
1 TTCTGTTCAACTCTTATGAGT
* * *
62353494 TTCTGTTCAGCTC-TATTAAGC
1 TTCTGTTCAACTCTTA-TGAGT
* *
62353515 TTCTGTTCAACCCTTATGGGT
1 TTCTGTTCAACTCTTATGAGT
* * *
62353536 TTCTGTTTAGCTCTTATGAGC
1 TTCTGTTCAACTCTTATGAGT
* * *
62353557 TTCCGTTCAACCCTTATGGGT
1 TTCTGTTCAACTCTTATGAGT
* * * * *
62353578 TTCTGTTTAGCACTTATGTGC
1 TTCTGTTCAACTCTTATGAGT
62353599 TTCTGTTCA
1 TTCTGTTCA
62353608 GCCTTCAGGC
Statistics
Matches: 85, Mismatches: 27, Indels: 4
0.73 0.23 0.03
Matches are distributed among these distances:
20 2 0.02
21 81 0.95
22 2 0.02
ACGTcount: A:0.16, C:0.21, G:0.17, T:0.45
Consensus pattern (21 bp):
TTCTGTTCAACTCTTATGAGT
Found at i:62353519 original size:42 final size:42
Alignment explanation
Indices: 62353451--62353607 Score: 163
Period size: 42 Copynumber: 3.7 Consensus size: 42
62353441 TCGTGTTTAC
* * * * * * * *
62353451 TTTCCGTTTAGCTCTCACAAGCTTCTGTTTAACTCATATGAG
1 TTTCTGTTCAGCTCTTATAAGCTTCTGTTCAACCCTTATGGG
62353493 TTTCTGTTCAGCTC-TATTAAGCTTCTGTTCAACCCTTATGGG
1 TTTCTGTTCAGCTCTTA-TAAGCTTCTGTTCAACCCTTATGGG
* * *
62353535 TTTCTGTTTAGCTCTTATGAGCTTCCGTTCAACCCTTATGGG
1 TTTCTGTTCAGCTCTTATAAGCTTCTGTTCAACCCTTATGGG
* * **
62353577 TTTCTGTTTAGCACTTATGTGCTTCTGTTCA
1 TTTCTGTTCAGCTCTTATAAGCTTCTGTTCA
62353608 GCCTTCAGGC
Statistics
Matches: 99, Mismatches: 14, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
41 1 0.01
42 96 0.97
43 2 0.02
ACGTcount: A:0.17, C:0.23, G:0.17, T:0.44
Consensus pattern (42 bp):
TTTCTGTTCAGCTCTTATAAGCTTCTGTTCAACCCTTATGGG
Found at i:62353882 original size:13 final size:13
Alignment explanation
Indices: 62353864--62353926 Score: 74
Period size: 13 Copynumber: 4.9 Consensus size: 13
62353854 AGTTTGGCAA
62353864 TGCTTTTGAAAAG
1 TGCTTTTGAAAAG
*
62353877 TGCTTTTGGAAAG
1 TGCTTTTGAAAAG
* *
62353890 TGCTGTGGAAAAG
1 TGCTTTTGAAAAG
*
62353903 TGCTTTTGAGAAG
1 TGCTTTTGAAAAG
*
62353916 TAC-TTTGAAAA
1 TGCTTTTGAAAA
62353927 TTTTAGTTTA
Statistics
Matches: 41, Mismatches: 9, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
12 7 0.17
13 34 0.83
ACGTcount: A:0.30, C:0.08, G:0.27, T:0.35
Consensus pattern (13 bp):
TGCTTTTGAAAAG
Found at i:62354201 original size:20 final size:21
Alignment explanation
Indices: 62354173--62354223 Score: 61
Period size: 20 Copynumber: 2.4 Consensus size: 21
62354163 GTAAAATTTA
62354173 ATTAGAATATATAAACTAT-ATT
1 ATTA-AATATATAAA-TATAATT
*
62354195 -TTAAATATTTAAATATAATT
1 ATTAAATATATAAATATAATT
62354215 ATTAAATAT
1 ATTAAATAT
62354224 TTGTAATTAG
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
19 3 0.12
20 12 0.46
21 11 0.42
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.45
Consensus pattern (21 bp):
ATTAAATATATAAATATAATT
Found at i:62354221 original size:21 final size:21
Alignment explanation
Indices: 62354173--62354225 Score: 65
Period size: 21 Copynumber: 2.5 Consensus size: 21
62354163 GTAAAATTTA
*
62354173 ATTAGAATATATAAACTATATT
1 ATTA-AATATTTAAACTATATT
62354195 -TTAAATATTTAAA-TATAATT
1 ATTAAATATTTAAACTAT-ATT
62354215 ATTAAATATTT
1 ATTAAATATTT
62354226 GTAATTAGTA
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
19 3 0.11
20 12 0.43
21 13 0.46
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (21 bp):
ATTAAATATTTAAACTATATT
Found at i:62355416 original size:31 final size:31
Alignment explanation
Indices: 62355381--62355444 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
62355371 AAATTCGGGT
62355381 TTTATGAAATAAAAAATTATTAAATTTTTAC
1 TTTATGAAATAAAAAATTATTAAATTTTTAC
*
62355412 TTTATGAATTAAAAAATTATTAAATTTTTAC
1 TTTATGAAATAAAAAATTATTAAATTTTTAC
62355443 TT
1 TT
62355445 AAATTTGATT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.45, C:0.03, G:0.03, T:0.48
Consensus pattern (31 bp):
TTTATGAAATAAAAAATTATTAAATTTTTAC
Found at i:62355582 original size:16 final size:16
Alignment explanation
Indices: 62355530--62355592 Score: 58
Period size: 16 Copynumber: 3.9 Consensus size: 16
62355520 GATTGAAAAT
62355530 TTTTAAATATTTTGAGAA
1 TTTTAAA-ATTTT-AGAA
*
62355548 TTTTAAAATTTTAGTA
1 TTTTAAAATTTTAGAA
*
62355564 TTTTACAA-TTTATGAA
1 TTTTAAAATTTTA-GAA
*
62355580 -TTTAAAATGTTAG
1 TTTTAAAATTTTAG
62355593 GATTGTAATT
Statistics
Matches: 38, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
15 11 0.29
16 15 0.39
17 5 0.13
18 7 0.18
ACGTcount: A:0.38, C:0.02, G:0.10, T:0.51
Consensus pattern (16 bp):
TTTTAAAATTTTAGAA
Found at i:62358439 original size:30 final size:30
Alignment explanation
Indices: 62358379--62358440 Score: 72
Period size: 29 Copynumber: 2.1 Consensus size: 30
62358369 TAGTTATATC
* *
62358379 TTTATAATTTTTAAAGGATTAAATTAAATT
1 TTTATAATTTTTAAAGGATCAAAATAAATT
* *
62358409 TTTATAA-TTTTAGAGGGTCAAAATACAATT
1 TTTATAATTTTTAAAGGATCAAAATA-AATT
62358439 TT
1 TT
62358441 ACATTTTAGG
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
29 14 0.52
30 13 0.48
ACGTcount: A:0.40, C:0.03, G:0.10, T:0.47
Consensus pattern (30 bp):
TTTATAATTTTTAAAGGATCAAAATAAATT
Found at i:62360565 original size:91 final size:92
Alignment explanation
Indices: 62360419--62360637 Score: 264
Period size: 91 Copynumber: 2.4 Consensus size: 92
62360409 CAACTGTCTA
* * * * *
62360419 TGCAGATAAAAGTTGCTAATACTTTGTAGATGAACCATTGGTTAAGTAGGTAAACTAG-AGACTG
1 TGCATATAAAAGTTGCTAATACATTGTAGATGAACCATTGGTCAAGTAGGTAAACT-GTAGAATA
* * *
62360483 AAATATTGGTGGTTGAACCATCCATTTG
65 AAATATTGATGGATGAACCATCCATTAG
* * * * *
62360511 TGCATATAAAAGTTGTTGA-ACATTGTGGATGAACCATTGGTCGAGTAGGTAAACTGTCGAATAA
1 TGCATATAAAAGTTGCTAATACATTGTAGATGAACCATTGGTCAAGTAGGTAAACTGTAGAATAA
62360575 AATATTGATGGATGAACCATCCATTAG
66 AATATTGATGGATGAACCATCCATTAG
* * *
62360602 TGCATATAAAAGCTACTAATACA-TGTGGATGAACCA
1 TGCATATAAAAGTTGCTAATACATTGTAGATGAACCA
62360638 CTAGTCGAGG
Statistics
Matches: 108, Mismatches: 17, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
90 1 0.01
91 88 0.81
92 19 0.18
ACGTcount: A:0.36, C:0.13, G:0.22, T:0.30
Consensus pattern (92 bp):
TGCATATAAAAGTTGCTAATACATTGTAGATGAACCATTGGTCAAGTAGGTAAACTGTAGAATAA
AATATTGATGGATGAACCATCCATTAG
Found at i:62360678 original size:91 final size:89
Alignment explanation
Indices: 62360483--62360684 Score: 219
Period size: 91 Copynumber: 2.2 Consensus size: 89
62360473 CTAGAGACTG
* * * ** * *
62360483 AAATATTGGTGGTTGAACCATCCATTTGTGCATATAAAAGTTGTTGAACATTGTGGATGAACCAT
1 AAATATT-GTGGATGAACCATCCATTAGTGCATATAAAAGCTACTAAACATTGTGGATGAACCAC
* *
62360548 TGGTCGAGTAGGTAAACTGTCGAATA
65 TAGTCGAG-AGATAAACTGTCGAATA
62360574 AAATATTGATGGATGAACCATCCATTAGTGCATATAAAAGCTACTAATACA-TGTGGATGAACCA
1 AAATATTG-TGGATGAACCATCCATTAGTGCATATAAAAGCTACTAA-ACATTGTGGATGAACCA
* *
62360638 CTAGTCGAG-GATATGACTGTCGACTA
64 CTAGTCGAGAGATA-AACTGTCGAATA
*
62360664 AAAGTCATTGTGGATAAACCA
1 AAA-T-ATTGTGGATGAACCA
62360685 CTGGTCGAGC
Statistics
Matches: 94, Mismatches: 12, Indels: 10
0.81 0.10 0.09
Matches are distributed among these distances:
89 3 0.03
90 14 0.15
91 70 0.74
92 7 0.07
ACGTcount: A:0.35, C:0.14, G:0.22, T:0.29
Consensus pattern (89 bp):
AAATATTGTGGATGAACCATCCATTAGTGCATATAAAAGCTACTAAACATTGTGGATGAACCACT
AGTCGAGAGATAAACTGTCGAATA
Found at i:62361883 original size:13 final size:13
Alignment explanation
Indices: 62361865--62361899 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
62361855 ATAGAGGAAA
62361865 GAAAAGAAATAGG
1 GAAAAGAAATAGG
*
62361878 GAAAAGAAATCGG
1 GAAAAGAAATAGG
*
62361891 GAGAAGAAA
1 GAAAAGAAA
62361900 GAAATTCTAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.60, C:0.03, G:0.31, T:0.06
Consensus pattern (13 bp):
GAAAAGAAATAGG
Found at i:62368548 original size:20 final size:21
Alignment explanation
Indices: 62368514--62368552 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
62368504 TTATAATATC
*
62368514 ATAAACAATATGAATAAAAAA
1 ATAAACAATAGGAATAAAAAA
62368535 ATAAA-AATAGGAATAAAA
1 ATAAACAATAGGAATAAAA
62368553 GAAGAAATTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.72, C:0.03, G:0.08, T:0.18
Consensus pattern (21 bp):
ATAAACAATAGGAATAAAAAA
Found at i:62373622 original size:30 final size:30
Alignment explanation
Indices: 62373588--62373646 Score: 100
Period size: 30 Copynumber: 2.0 Consensus size: 30
62373578 TATTTTATTA
62373588 TTAATTTTGTTATTATTTTAAAGGCATTTG
1 TTAATTTTGTTATTATTTTAAAGGCATTTG
* *
62373618 TTAATTTTGTTATTATTTTAGAGGTATTT
1 TTAATTTTGTTATTATTTTAAAGGCATTT
62373647 TCTTGTTAAG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.25, C:0.02, G:0.14, T:0.59
Consensus pattern (30 bp):
TTAATTTTGTTATTATTTTAAAGGCATTTG
Found at i:62374191 original size:43 final size:43
Alignment explanation
Indices: 62374130--62374600 Score: 306
Period size: 43 Copynumber: 10.6 Consensus size: 43
62374120 ACATAGGATT
* *
62374130 ATCGATATGTGATTACGTGTAAGACCACGTCTGAGATGTTGGG
1 ATCGATATGTGATTACGTGTAAGACCACGTCTGAGACGTTGGC
* * * *
62374173 ATCGATATGTGATTACGTGTAATACCACATCTGGGACGTTGAC
1 ATCGATATGTGATTACGTGTAAGACCACGTCTGAGACGTTGGC
* * *
62374216 ATCGATATGTGATTTCGTGTAAGACCATGTCTG-GAATGTTGGC
1 ATCGATATGTGATTACGTGTAAGACCACGTCTGAG-ACGTTGGC
* * * * *
62374259 ATCGATATGTGAATACGTGTAAGACCATGCCT-AGGACATTGAC
1 ATCGATATGTGATTACGTGTAAGACCACGTCTGA-GACGTTGGC
* * * * *
62374302 ATCGATATGTGATTATGTGTAAGAGCACGTTTGGGACATTGGC
1 ATCGATATGTGATTACGTGTAAGACCACGTCTGAGACGTTGGC
* *
62374345 ATCGATATGTGATTACATGTAAGACCACGTTTGAGGTAAGAGCACGTTTGGGAC
1 ATCGATATGTGATTACGTGTAAGACCACG--T---CT--GAG-ACG-TT-GG-C
* ** * * * * ** * *
62374399 ATTGGCAT-CGA-TATGTGATTACATGTAAGACCACGTTTGAGACGTTGGC
1 ATCGATATGTGATTACGTG-TAAGA-CCACG-T--C---TGAGACGTTGGC
* *
62374448 ATCGATATGTGATTACGTGTAAGACCACGTCTGGGACATTGGC
1 ATCGATATGTGATTACGTGTAAGACCACGTCTGAGACGTTGGC
* *
62374491 ATCGATAT-TGATTATGTGTAAGACCACGTCTGGGACGTTGGC
1 ATCGATATGTGATTACGTGTAAGACCACGTCTGAGACGTTGGC
* * ** * *
62374533 ATCGATAAGCGATTACGTGTAAGACCTTGTCTAAGACAG-TGGT
1 ATCGATATGTGATTACGTGTAAGACCACGTCTGAGAC-GTTGGC
* *
62374576 TTCGATATGTGATTACATGTAAGAC
1 ATCGATATGTGATTACGTGTAAGAC
62374601 TATGTTTGGG
Statistics
Matches: 329, Mismatches: 75, Indels: 48
0.73 0.17 0.11
Matches are distributed among these distances:
42 40 0.12
43 230 0.70
44 2 0.01
45 1 0.00
46 1 0.00
48 1 0.00
49 8 0.02
50 9 0.03
51 9 0.03
52 9 0.03
53 10 0.03
54 8 0.02
55 1 0.00
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.30
Consensus pattern (43 bp):
ATCGATATGTGATTACGTGTAAGACCACGTCTGAGACGTTGGC
Found at i:62374413 original size:60 final size:60
Alignment explanation
Indices: 62374320--62374439 Score: 240
Period size: 60 Copynumber: 2.0 Consensus size: 60
62374310 GTGATTATGT
62374320 GTAAGAGCACGTTTGGGACATTGGCATCGATATGTGATTACATGTAAGACCACGTTTGAG
1 GTAAGAGCACGTTTGGGACATTGGCATCGATATGTGATTACATGTAAGACCACGTTTGAG
62374380 GTAAGAGCACGTTTGGGACATTGGCATCGATATGTGATTACATGTAAGACCACGTTTGAG
1 GTAAGAGCACGTTTGGGACATTGGCATCGATATGTGATTACATGTAAGACCACGTTTGAG
62374440 ACGTTGGCAT
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
60 60 1.00
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.28
Consensus pattern (60 bp):
GTAAGAGCACGTTTGGGACATTGGCATCGATATGTGATTACATGTAAGACCACGTTTGAG
Found at i:62374456 original size:103 final size:103
Alignment explanation
Indices: 62374292--62374477 Score: 309
Period size: 103 Copynumber: 1.8 Consensus size: 103
62374282 ACCATGCCTA
** * *
62374292 GGACATTGACATCGATATGTGATTATGTGTAAGAGCACGTTTGGGACATTGGCATCGATATGTGA
1 GGACATTGACATCGATATGTGATTACATGTAAGACCACGTTTGAGACATTGGCATCGATATGTGA
62374357 TTACATGTAAGACCACGTTTGAGGTAAGAGCACGTTTG
66 TTACATGTAAGACCACGTTTGAGGTAAGAGCACGTTTG
* *
62374395 GGACATTGGCATCGATATGTGATTACATGTAAGACCACGTTTGAGACGTTGGCATCGATATGTGA
1 GGACATTGACATCGATATGTGATTACATGTAAGACCACGTTTGAGACATTGGCATCGATATGTGA
*
62374460 TTACGTGTAAGACCACGT
66 TTACATGTAAGACCACGT
62374478 CTGGGACATT
Statistics
Matches: 76, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
103 76 1.00
ACGTcount: A:0.28, C:0.15, G:0.27, T:0.30
Consensus pattern (103 bp):
GGACATTGACATCGATATGTGATTACATGTAAGACCACGTTTGAGACATTGGCATCGATATGTGA
TTACATGTAAGACCACGTTTGAGGTAAGAGCACGTTTG
Found at i:62374498 original size:146 final size:145
Alignment explanation
Indices: 62374254--62374519 Score: 399
Period size: 146 Copynumber: 1.8 Consensus size: 145
62374244 GTCTGGAATG
* * *
62374254 TTGGCATCGATATGTGAATACGTGTAAGACCATGCCTAGGACATTGACATCGATATGTGATTATG
1 TTGGCATCGATATGTGAATACATGTAAGACCACGCCTAGGACATTGACATCGATATGTGATTACG
* *
62374319 TGTAAGAGCACGTTTGGGACATTGGCATCGATATGTGATTACATGTAAGACCACGTTTGAGGTAA
66 TGTAAGACCACGTCTGGGACATTGGCATCGATAT-TGATTACATGTAAGACCACGTTTGAGGTAA
62374384 GAGCACGTTTGGGACA
130 GAGCACGTTTGGGACA
* * * * *
62374400 TTGGCATCGATATGTGATTACATGTAAGACCACG-TTTGAGACGTTGGCATCGATATGTGATTAC
1 TTGGCATCGATATGTGAATACATGTAAGACCACGCCTAG-GACATTGACATCGATATGTGATTAC
**
62374464 GTGTAAGACCACGTCTGGGACATTGGCATCGATATTGATTATGTGTAAGACCACGT
65 GTGTAAGACCACGTCTGGGACATTGGCATCGATATTGATTACATGTAAGACCACGT
62374520 CTGGGACGTT
Statistics
Matches: 107, Mismatches: 12, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
145 21 0.20
146 86 0.80
ACGTcount: A:0.28, C:0.16, G:0.27, T:0.30
Consensus pattern (145 bp):
TTGGCATCGATATGTGAATACATGTAAGACCACGCCTAGGACATTGACATCGATATGTGATTACG
TGTAAGACCACGTCTGGGACATTGGCATCGATATTGATTACATGTAAGACCACGTTTGAGGTAAG
AGCACGTTTGGGACA
Found at i:62374535 original size:85 final size:86
Alignment explanation
Indices: 62374380--62374600 Score: 300
Period size: 85 Copynumber: 2.6 Consensus size: 86
62374370 CACGTTTGAG
* * *
62374380 GTAAGAGCACGTTTGGGACATTGGCATCGATATGTGATTACATGTAAGACCACGTTTGAGACGTT
1 GTAAGACCACGTCTGGGACATTGGCATCGATATGTGATTACATGTAAGACCACGTCTGAGACGTT
* *
62374445 GGCATCGATATGTGATTACGT
66 GGCATCGATAAGCGATTACGT
** *
62374466 GTAAGACCACGTCTGGGACATTGGCATCGATAT-TGATTATGTGTAAGACCACGTCTGGGACGTT
1 GTAAGACCACGTCTGGGACATTGGCATCGATATGTGATTACATGTAAGACCACGTCTGAGACGTT
62374530 GGCATCGATAAGCGATTACGT
66 GGCATCGATAAGCGATTACGT
** ** * **
62374551 GTAAGACCTTGTCTAAGACAGTGGTTTCGATATGTGATTACATGTAAGAC
1 GTAAGACCACGTCTGGGACATTGGCATCGATATGTGATTACATGTAAGAC
62374601 TATGTTTGGG
Statistics
Matches: 117, Mismatches: 17, Indels: 2
0.86 0.12 0.01
Matches are distributed among these distances:
85 72 0.62
86 45 0.38
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.29
Consensus pattern (86 bp):
GTAAGACCACGTCTGGGACATTGGCATCGATATGTGATTACATGTAAGACCACGTCTGAGACGTT
GGCATCGATAAGCGATTACGT
Found at i:62374611 original size:128 final size:128
Alignment explanation
Indices: 62374380--62374620 Score: 313
Period size: 128 Copynumber: 1.9 Consensus size: 128
62374370 CACGTTTGAG
* * * * * *
62374380 GTAAGAGCACGTTTGGGACATTGGCATCGATATGTGATTACATGTAAGACCACGTTTGAGACGTT
1 GTAAGACCACGTCTGGGACATTGGCATCGATAAGCGATTACATGTAAGACCACGTCTAAGACGTT
*
62374445 GGCATCGATATGTGATTACGTGTAAGACCACGTCTGGGACATTGGCATCGATATTGATTATGT
66 GGCATCGATATGTGATTACATGTAAGACCACGTCTGGGACATTGGCATCGATATTGATTATGT
* * **
62374508 GTAAGACCACGTCTGGGACGTTGGCATCGATAAGCGATTACGTGTAAGACCTTGTCTAAGACAG-
1 GTAAGACCACGTCTGGGACATTGGCATCGATAAGCGATTACATGTAAGACCACGTCTAAGAC-GT
** * * * *
62374572 TGGTTTCGATATGTGATTACATGTAAGACTATGTTTGGGACCTTGGCAT
65 TGGCATCGATATGTGATTACATGTAAGACCACGTCTGGGACATTGGCAT
62374621 TGTACGATAT
Statistics
Matches: 95, Mismatches: 17, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
128 94 0.99
129 1 0.01
ACGTcount: A:0.26, C:0.16, G:0.27, T:0.30
Consensus pattern (128 bp):
GTAAGACCACGTCTGGGACATTGGCATCGATAAGCGATTACATGTAAGACCACGTCTAAGACGTT
GGCATCGATATGTGATTACATGTAAGACCACGTCTGGGACATTGGCATCGATATTGATTATGT
Found at i:62382098 original size:6 final size:6
Alignment explanation
Indices: 62382082--62382154 Score: 62
Period size: 6 Copynumber: 12.5 Consensus size: 6
62382072 AACATGCAAT
* * *
62382082 AAAAT- AAAATA AAAATAA AAAATA AAAA-A TAAATA AATATA TAAATA
1 AAAATA AAAATA AAAAT-A AAAATA AAAATA AAAATA AAAATA AAAATA
* * *
62382129 TAAATA AAGATA TAAAT- AAAATA AAA
1 AAAATA AAAATA AAAATA AAAATA AAA
62382155 TTAGGTTGCG
Statistics
Matches: 54, Mismatches: 10, Indels: 7
0.76 0.14 0.10
Matches are distributed among these distances:
5 13 0.24
6 35 0.65
7 6 0.11
ACGTcount: A:0.77, C:0.00, G:0.01, T:0.22
Consensus pattern (6 bp):
AAAATA
Found at i:62382104 original size:7 final size:7
Alignment explanation
Indices: 62382087--62382120 Score: 52
Period size: 7 Copynumber: 4.9 Consensus size: 7
62382077 GCAATAAAAT
62382087 AAAAT-A
1 AAAATAA
62382093 AAAATAA
1 AAAATAA
62382100 AAAATAA
1 AAAATAA
62382107 AAAATAA
1 AAAATAA
62382114 ATAAATA
1 A-AAATA
62382121 TATAAATATA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
6 5 0.19
7 16 0.62
8 5 0.19
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (7 bp):
AAAATAA
Found at i:62382105 original size:18 final size:18
Alignment explanation
Indices: 62382082--62382154 Score: 80
Period size: 18 Copynumber: 4.2 Consensus size: 18
62382072 AACATGCAAT
62382082 AAAATA-AAATAAAAATA
1 AAAATATAAATAAAAATA
*
62382099 AAAA-ATAAAAAATAAATA
1 AAAATATAAATAA-AAATA
* *
62382117 AATATATAAATATAAATA
1 AAAATATAAATAAAAATA
*
62382135 AAGATATAAAT-AAAATA
1 AAAATATAAATAAAAATA
62382152 AAA
1 AAA
62382155 TTAGGTTGCG
Statistics
Matches: 46, Mismatches: 7, Indels: 6
0.78 0.12 0.10
Matches are distributed among these distances:
16 1 0.02
17 16 0.35
18 23 0.50
19 6 0.13
ACGTcount: A:0.77, C:0.00, G:0.01, T:0.22
Consensus pattern (18 bp):
AAAATATAAATAAAAATA
Found at i:62382117 original size:4 final size:4
Alignment explanation
Indices: 62382094--62382153 Score: 56
Period size: 4 Copynumber: 15.8 Consensus size: 4
62382084 AATAAAATAA
* *
62382094 AAAT AAA- AAAT AAA- AAAT AAAT AAAT ATAT AAAT --AT AAAT AAAG
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT
*
62382138 ATAT AAAT AAAAT AAA
1 AAAT AAAT -AAAT AAA
62382154 ATTAGGTTGC
Statistics
Matches: 45, Mismatches: 6, Indels: 10
0.74 0.10 0.16
Matches are distributed among these distances:
2 2 0.04
3 6 0.13
4 33 0.73
5 4 0.09
ACGTcount: A:0.75, C:0.00, G:0.02, T:0.23
Consensus pattern (4 bp):
AAAT
Found at i:62383272 original size:26 final size:26
Alignment explanation
Indices: 62383243--62383324 Score: 155
Period size: 26 Copynumber: 3.2 Consensus size: 26
62383233 TGATACAAAT
62383243 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
62383269 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
62383295 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
62383321 TGAT
1 TGAT
62383325 GGGAATTTCA
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 54 1.00
ACGTcount: A:0.30, C:0.06, G:0.27, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:62386242 original size:47 final size:47
Alignment explanation
Indices: 62386179--62386608 Score: 653
Period size: 47 Copynumber: 9.0 Consensus size: 47
62386169 ATGATAGTAA
*
62386179 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGATAG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAG
* *
62386226 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGAGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAG
62386273 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAG
*
62386322 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGATAG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAG
*
62386369 GGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAG
*
62386418 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAG
*
62386467 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAG
* *
62386514 GGCCTAATGGCCGATGTGATGAATGTGGAAGTGTATATATATGTGACAG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAG
* * * * * *
62386563 GGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATA
62386609 AGTCCCGAAG
Statistics
Matches: 356, Mismatches: 21, Indels: 12
0.92 0.05 0.03
Matches are distributed among these distances:
47 179 0.50
49 177 0.50
ACGTcount: A:0.31, C:0.09, G:0.31, T:0.28
Consensus pattern (47 bp):
GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAG
Found at i:62386331 original size:49 final size:49
Alignment explanation
Indices: 62386179--62386608 Score: 664
Period size: 49 Copynumber: 9.0 Consensus size: 49
62386169 ATGATAGTAA
*
62386179 GGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATACGTGATAG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAG
* *
62386226 GGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGAGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAG
62386273 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAG
*
62386322 GGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATACGTGATAG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAG
*
62386369 GGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAG
*
62386418 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAG
*
62386467 GGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAG
* *
62386514 GGCCTAATGGCCGATGTGATGAATGTGGAAGTGTATATATATGTGACAG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAG
* * * * *
62386563 GGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATA-A-ATGTGATA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATA
62386609 AGTCCCGAAG
Statistics
Matches: 357, Mismatches: 20, Indels: 12
0.92 0.05 0.03
Matches are distributed among these distances:
47 175 0.49
48 1 0.00
49 181 0.51
ACGTcount: A:0.31, C:0.09, G:0.31, T:0.28
Consensus pattern (49 bp):
GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAG
Found at i:62386350 original size:96 final size:97
Alignment explanation
Indices: 62386176--62386608 Score: 666
Period size: 96 Copynumber: 4.5 Consensus size: 97
62386166 GAAATGATAG
*
62386176 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATACGTGATAGGGCCTAATGGCCG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCG
*
62386239 ATGTGATGAATGTGAAAGTG-TATATATGAGA
66 ATGTGATGAATGTGAAAGTGATATATATGTGA
62386270 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCG
*
62386335 ATGTGATGAATGTGAAAGTG-TATATACGTGA
66 ATGTGATGAATGTGAAAGTGATATATATGTGA
* *
62386366 TAGGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCG
62386431 ATGTGATGAATGTGAAAGTGTATATATATGTGA
66 ATGTGATGAATGTGAAAGTG-ATATATATGTGA
*
62386464 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCG
*
62386527 ATGTGATGAATGTGGAAGTGTATATATATGTGA
66 ATGTGATGAATGTGAAAGTG-ATATATATGTGA
* * * * * * *
62386560 CAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATA-A-ATGTGATA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATA
62386609 AGTCCCGAAG
Statistics
Matches: 316, Mismatches: 17, Indels: 10
0.92 0.05 0.03
Matches are distributed among these distances:
94 36 0.11
96 233 0.74
97 1 0.00
98 46 0.15
ACGTcount: A:0.31, C:0.09, G:0.31, T:0.28
Consensus pattern (97 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCG
ATGTGATGAATGTGAAAGTGATATATATGTGA
Found at i:62386785 original size:37 final size:37
Alignment explanation
Indices: 62386729--62386807 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
62386719 CGGAGCTCTA
* ** *
62386729 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGAAGATTATGTCCGGGT
*
62386766 AAGACCCGATAACTTCGTGTGAAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGAAGATTATGTCCGGGT
62386803 AAGAC
1 AAGAC
62386808 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGAAGATTATGTCCGGGT
Found at i:62388723 original size:29 final size:29
Alignment explanation
Indices: 62388688--62388761 Score: 98
Period size: 29 Copynumber: 2.6 Consensus size: 29
62388678 GTTGTGAGAT
*
62388688 TGGCACTAAGTGTGC-AGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGA-G-TTGAAAGTACA
*
62388717 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
62388746 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
62388762 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
28 5 0.12
29 35 0.85
30 1 0.02
ACGTcount: A:0.27, C:0.16, G:0.31, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:62389124 original size:40 final size:40
Alignment explanation
Indices: 62389069--62389645 Score: 974
Period size: 40 Copynumber: 14.4 Consensus size: 40
62389059 GTTATTCGAA
62389069 TGATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAG
1 TGATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAG
62389109 TGATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAG
1 TGATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAG
62389149 TGATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAG
1 TGATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAG
62389189 TGATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAG
1 TGATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAG
62389229 TGATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAG
1 TGATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAG
*
62389269 CGATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAG
1 TGATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAG
*
62389309 CGATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAG
1 TGATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAG
62389349 TGATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAG
1 TGATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAG
62389389 TGATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAG
1 TGATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAG
*
62389429 CGATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAG
1 TGATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAG
*
62389469 CGATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAG
1 TGATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAG
* * *
62389509 CGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAG
1 TGATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAG
* * * * *
62389549 TGATATATCCGTGCTAAATCCCAAAGAGCATTCGTGCTAG
1 TGATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAG
* * * * *
62389589 TGATATATCCGTGCTAAATCCCGAAGAGCAATCATGCTGG
1 TGATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAG
*
62389629 TGACGTGTATTCGGGCT
1 TGA--TGTATCCGGGCT
62389646 TTCGTGCCTG
Statistics
Matches: 517, Mismatches: 18, Indels: 2
0.96 0.03 0.00
Matches are distributed among these distances:
40 508 0.98
42 9 0.02
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
TGATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAG
Found at i:62393222 original size:49 final size:47
Alignment explanation
Indices: 62393070--62393546 Score: 738
Period size: 47 Copynumber: 10.0 Consensus size: 47
62393060 ATGATAGTAA
*
62393070 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGATAG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAG
* *
62393117 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGAGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAG
62393164 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAG
*
62393213 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGATAG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAG
*
62393260 GGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAG
*
62393309 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAG
*
62393358 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAG
*
62393405 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAG
* *
62393452 GGCCTAATGGCCGATGTGATGAATGTGGAAGTGTATATATATGTGACAG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAG
* * * * * *
62393501 GGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATA
62393547 AGTCCCGAAG
Statistics
Matches: 403, Mismatches: 21, Indels: 12
0.92 0.05 0.03
Matches are distributed among these distances:
47 226 0.56
49 177 0.44
ACGTcount: A:0.31, C:0.09, G:0.31, T:0.29
Consensus pattern (47 bp):
GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAG
Found at i:62393241 original size:96 final size:96
Alignment explanation
Indices: 62393067--62393548 Score: 792
Period size: 96 Copynumber: 5.0 Consensus size: 96
62393057 GAAATGATAG
*
62393067 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATACGTGATAGGGCCTAATGGCCG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCG
*
62393130 ATGTGATGAATGTGAAAGTGTATATATGAGA
66 ATGTGATGAATGTGAAAGTGTATATATGTGA
62393161 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCG
*
62393226 ATGTGATGAATGTGAAAGTGTATATACGTGA
66 ATGTGATGAATGTGAAAGTGTATATATGTGA
* *
62393257 TAGGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCG
62393322 ATGTGATGAATGTGAAAGTGTATATATATGTGA
66 ATGTGATGAATGTGAAAGTG--TATATATGTGA
*
62393355 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCG
62393418 ATGTGATGAATGTGAAAGTGTATATATGTGA
66 ATGTGATGAATGTGAAAGTGTATATATGTGA
* * * * *
62393449 TAAGGCCTAATGGCCGATGTGATGAATGTGGAAGTGTATATATATGTGACAGGGCCGAGTGGCCA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCG
* * *
62393514 ACGTGATGGATGTGAAAGTGTATAAATGTGA
66 ATGTGATGAATGTGAAAGTGTATATATGTGA
62393545 TAAG
1 TAAG
62393549 TCCCGAAGGG
Statistics
Matches: 364, Mismatches: 18, Indels: 10
0.93 0.05 0.03
Matches are distributed among these distances:
94 82 0.23
96 238 0.65
98 44 0.12
ACGTcount: A:0.31, C:0.09, G:0.31, T:0.28
Consensus pattern (96 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCG
ATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:62396104 original size:26 final size:26
Alignment explanation
Indices: 62396054--62396104 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
62396044 ACAGTTTTAC
62396054 CCCCTAGGAGATAAATTACCGAAATA
1 CCCCTAGGAGATAAATTACCGAAATA
* *
62396080 CCCCTAGG-GTTAAATTGACCTAAAT
1 CCCCTAGGAGATAAATT-ACCGAAAT
62396105 GCATGTTTGA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 7 0.32
26 15 0.68
ACGTcount: A:0.37, C:0.24, G:0.16, T:0.24
Consensus pattern (26 bp):
CCCCTAGGAGATAAATTACCGAAATA
Found at i:62398345 original size:26 final size:26
Alignment explanation
Indices: 62398316--62398371 Score: 112
Period size: 26 Copynumber: 2.2 Consensus size: 26
62398306 TGATACAAAT
62398316 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
62398342 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
62398368 TGAT
1 TGAT
62398372 GGGAATTTCA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.30, C:0.07, G:0.27, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:62402952 original size:20 final size:20
Alignment explanation
Indices: 62402927--62402967 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
62402917 TTCTGCTTAC
62402927 TTAGTTTTATCTCCCTGTTT
1 TTAGTTTTATCTCCCTGTTT
*
62402947 TTAGTTTTATTTCCCTGTTT
1 TTAGTTTTATCTCCCTGTTT
62402967 T
1 T
62402968 AGAGTAAATT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.10, C:0.17, G:0.10, T:0.63
Consensus pattern (20 bp):
TTAGTTTTATCTCCCTGTTT
Found at i:62403219 original size:17 final size:18
Alignment explanation
Indices: 62403183--62403220 Score: 51
Period size: 17 Copynumber: 2.1 Consensus size: 18
62403173 ATAACATGTG
62403183 AAATTTTCAGAACTTATAA
1 AAATTTTCA-AACTTATAA
*
62403202 AAATTTTC-AACTTTTAA
1 AAATTTTCAAACTTATAA
62403219 AA
1 AA
62403221 TGTCACACGC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 10 0.56
19 8 0.44
ACGTcount: A:0.47, C:0.11, G:0.03, T:0.39
Consensus pattern (18 bp):
AAATTTTCAAACTTATAA
Found at i:62426313 original size:19 final size:19
Alignment explanation
Indices: 62426289--62426326 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
62426279 GAGAATTTTG
62426289 CTAAATGGACCTTATGCAT
1 CTAAATGGACCTTATGCAT
62426308 CTAAATGGACCTTATGCAT
1 CTAAATGGACCTTATGCAT
62426327 GTTAACACTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.32, C:0.21, G:0.16, T:0.32
Consensus pattern (19 bp):
CTAAATGGACCTTATGCAT
Found at i:62427367 original size:16 final size:16
Alignment explanation
Indices: 62427346--62427378 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
62427336 CGCTACAATT
62427346 ACTAATTTGGGATTCC
1 ACTAATTTGGGATTCC
62427362 ACTAATTTGGGATTCC
1 ACTAATTTGGGATTCC
62427378 A
1 A
62427379 TCCTCAGTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.27, C:0.18, G:0.18, T:0.36
Consensus pattern (16 bp):
ACTAATTTGGGATTCC
Found at i:62429772 original size:27 final size:27
Alignment explanation
Indices: 62429741--62429919 Score: 207
Period size: 27 Copynumber: 6.6 Consensus size: 27
62429731 TTAATTGTAC
62429741 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
62429768 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
62429794 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
62429822 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
62429850 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
62429877 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
62429904 AGCACTGAGTGTGCGA
1 AGCACTAAGTGTGCGA
62429920 ACTCAATATA
Statistics
Matches: 130, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 107 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:62429861 original size:82 final size:81
Alignment explanation
Indices: 62429742--62429897 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
62429732 TAATTGTACA
* *
62429742 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
62429806 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
62429823 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
62429888 TGCGAGTTGA
65 TGCGAATTGA
62429898 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:62429909 original size:82 final size:81
Alignment explanation
Indices: 62429738--62429919 Score: 231
Period size: 82 Copynumber: 2.2 Consensus size: 81
62429728 GGATTAATTG
* *
62429738 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
62429803 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
62429819 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
62429883 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
62429901 TATAGCACTGAGTGTGCGA
1 TACAGCACTAAGTGTGCGA
62429920 ACTCAATATA
Statistics
Matches: 85, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 67 0.79
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Done.