Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100714657
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 3970000 characters in sequence are not A, C, G, or T
File 198 of 318
Found at i:62445298 original size:12 final size:12
Alignment explanation
Indices: 62445281--62445306 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
62445271 CATTCCGAAG
62445281 TATATATATACA
1 TATATATATACA
62445293 TATATATATACA
1 TATATATATACA
62445305 TA
1 TA
62445307 AGTATGCCAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.50, C:0.08, G:0.00, T:0.42
Consensus pattern (12 bp):
TATATATATACA
Found at i:62445823 original size:27 final size:27
Alignment explanation
Indices: 62445792--62445969 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
62445782 TGAATTGTAC
62445792 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
62445819 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
62445845 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
62445873 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
62445901 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
62445928 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
62445955 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
62445970 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:62445857 original size:54 final size:55
Alignment explanation
Indices: 62445767--62445969 Score: 216
Period size: 54 Copynumber: 3.7 Consensus size: 55
62445757 GAGATTGGCG
* * *
62445767 CTAAGTGTGCGGGATTGAAT-TGTACAGCACTAAGTGTGCGATTTGACTATGTTGCA
1 CTAAGTGTGC-GAATTGAATATG-ATAGCACTAAGTGTGCGATTTGACTATGTAGCA
* * * **
62445823 CTAAGTGTGCGAAATGAATATGAT-GCACTAAGTGTGCGAATTGACCATGCGGCA
1 CTAAGTGTGCGAATTGAATATGATAGCACTAAGTGTGCGATTTGACTATGTAGCA
* * * *
62445877 CTAAGTGTGCGAGTTTGACTATG-TAGCACTAAGTGTGCGATTTGATTACGTAGCA
1 CTAAGTGTGCGA-ATTGAATATGATAGCACTAAGTGTGCGATTTGACTATGTAGCA
* * *
62445932 CTAAGTGTGCGAGTTGATTAT-ATAGCACTGAGTGTGCG
1 CTAAGTGTGCGAATTGAATATGATAGCACTAAGTGTGCG
62445970 GACTCAATAT
Statistics
Matches: 124, Mismatches: 19, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
54 61 0.49
55 51 0.41
56 12 0.10
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.30
Consensus pattern (55 bp):
CTAAGTGTGCGAATTGAATATGATAGCACTAAGTGTGCGATTTGACTATGTAGCA
Found at i:62445960 original size:82 final size:81
Alignment explanation
Indices: 62445767--62445969 Score: 237
Period size: 82 Copynumber: 2.5 Consensus size: 81
62445757 GAGATTGGCG
* * *
62445767 CTAAGTGTGCGGGATTGAATTGTACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTG
1 CTAAGTGTGCGAG-TTG-ATTATACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTG
*
62445832 CGAAATGAATATGATGCA
64 CGAAATGAATACGATGCA
* ** * *
62445850 CTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGC
1 CTAAGTGTGCGAGTTGATTATACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGC
** *
62445915 GATTTGATTACG-TAGCA
65 GAAATGAATACGAT-GCA
* *
62445932 CTAAGTGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 CTAAGTGTGCGAGTTGATTATACAGCACTAAGTGTGCG
62445970 GACTCAATAT
Statistics
Matches: 99, Mismatches: 19, Indels: 5
0.80 0.15 0.04
Matches are distributed among these distances:
81 19 0.19
82 69 0.70
83 11 0.11
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.30
Consensus pattern (81 bp):
CTAAGTGTGCGAGTTGATTATACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCG
AAATGAATACGATGCA
Found at i:62448418 original size:43 final size:43
Alignment explanation
Indices: 62448352--62448437 Score: 145
Period size: 43 Copynumber: 2.0 Consensus size: 43
62448342 ATCAGGAATT
* *
62448352 GGTTGGGTATCAAGTTAGAAAAGACATCAAATTGGTTGCCTTA
1 GGTTAGGTATCAAGTTAGAAAAGACATCAAATTAGTTGCCTTA
*
62448395 GGTTAGGTATCAAGTTGGAAAAGACATCAAATTAGTTGCCTTA
1 GGTTAGGTATCAAGTTAGAAAAGACATCAAATTAGTTGCCTTA
62448438 TGTATTTGTA
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 40 1.00
ACGTcount: A:0.34, C:0.12, G:0.24, T:0.30
Consensus pattern (43 bp):
GGTTAGGTATCAAGTTAGAAAAGACATCAAATTAGTTGCCTTA
Found at i:62448872 original size:38 final size:37
Alignment explanation
Indices: 62448822--62448893 Score: 101
Period size: 38 Copynumber: 1.9 Consensus size: 37
62448812 TAAATTCATA
*
62448822 TAATAATAATTATATTAAGAATGTTA-TTAAATTATATT
1 TAATAATAATTATATTAA-AAT-ATAGTTAAATTATATT
*
62448860 TAATAATAATTATGTTAAAATATAGTTAAATTAT
1 TAATAATAATTATATTAAAATATAGTTAAATTAT
62448894 TTATTATTTT
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
36 2 0.06
37 12 0.39
38 17 0.55
ACGTcount: A:0.49, C:0.00, G:0.06, T:0.46
Consensus pattern (37 bp):
TAATAATAATTATATTAAAATATAGTTAAATTATATT
Found at i:62449127 original size:16 final size:16
Alignment explanation
Indices: 62449106--62449145 Score: 55
Period size: 16 Copynumber: 2.5 Consensus size: 16
62449096 TGAACTACTG
62449106 ATTACAGCTCTATTTC-
1 ATTACAGCTCTA-TTCA
*
62449122 ATTACAACTCTATTCA
1 ATTACAGCTCTATTCA
62449138 ATTACAGC
1 ATTACAGC
62449146 CTTATTCCAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
15 3 0.14
16 18 0.86
ACGTcount: A:0.33, C:0.25, G:0.05, T:0.38
Consensus pattern (16 bp):
ATTACAGCTCTATTCA
Found at i:62455603 original size:18 final size:19
Alignment explanation
Indices: 62455582--62455621 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 19
62455572 ATATAGTTGA
*
62455582 ATTTATTA-ATGTAATTTT
1 ATTTATTATATATAATTTT
62455600 ATTT-TTATATATAATTTT
1 ATTTATTATATATAATTTT
62455618 -TTTA
1 ATTTA
62455622 ATCAATCTGT
Statistics
Matches: 19, Mismatches: 1, Indels: 4
0.79 0.04 0.17
Matches are distributed among these distances:
17 6 0.32
18 13 0.68
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.65
Consensus pattern (19 bp):
ATTTATTATATATAATTTT
Found at i:62457662 original size:20 final size:20
Alignment explanation
Indices: 62457637--62457697 Score: 71
Period size: 20 Copynumber: 3.3 Consensus size: 20
62457627 TTTTTTATTA
62457637 TTAAAATAAAGTAAAAAGTT
1 TTAAAATAAAGTAAAAAGTT
62457657 TTAAAA-AAA-T---AA-TT
1 TTAAAATAAAGTAAAAAGTT
62457671 ATTAAAATAAAGTAAAAAGTT
1 -TTAAAATAAAGTAAAAAGTT
62457692 TTAAAA
1 TTAAAA
62457698 AAATAAATAA
Statistics
Matches: 34, Mismatches: 0, Indels: 14
0.71 0.00 0.29
Matches are distributed among these distances:
14 2 0.06
15 8 0.24
16 3 0.09
17 1 0.03
18 1 0.03
19 3 0.09
20 14 0.41
21 2 0.06
ACGTcount: A:0.62, C:0.00, G:0.07, T:0.31
Consensus pattern (20 bp):
TTAAAATAAAGTAAAAAGTT
Found at i:62457679 original size:35 final size:35
Alignment explanation
Indices: 62457633--62457703 Score: 142
Period size: 35 Copynumber: 2.0 Consensus size: 35
62457623 TTATTTTTTT
62457633 ATTATTAAAATAAAGTAAAAAGTTTTAAAAAAATA
1 ATTATTAAAATAAAGTAAAAAGTTTTAAAAAAATA
62457668 ATTATTAAAATAAAGTAAAAAGTTTTAAAAAAATA
1 ATTATTAAAATAAAGTAAAAAGTTTTAAAAAAATA
62457703 A
1 A
62457704 ATAAACAAAA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.63, C:0.00, G:0.06, T:0.31
Consensus pattern (35 bp):
ATTATTAAAATAAAGTAAAAAGTTTTAAAAAAATA
Found at i:62459766 original size:99 final size:99
Alignment explanation
Indices: 62459595--62459783 Score: 342
Period size: 99 Copynumber: 1.9 Consensus size: 99
62459585 TTCATTGAAG
* *
62459595 ATCTAATGATTATATCAATAGTTTTTGATGTTTTGGCCGAGGTTATAATGGCATGTATAGGTGGA
1 ATCTAATGATTATATCAATAGTTTTTGATATTTTGGCCGAGGTTATAATGGCATGTATAGGTAGA
62459660 CTTGTGTTTGATGATTAGTTGATAAATTCACACT
66 CTTGTGTTTGATGATTAGTTGATAAATTCACACT
* *
62459694 ATCTAATGATTATATCAATGGTTTTTGATATTTTGGCCGAGGTTATAATGGCATGTGTAGGTAGA
1 ATCTAATGATTATATCAATAGTTTTTGATATTTTGGCCGAGGTTATAATGGCATGTATAGGTAGA
62459759 CTTGTGTTTGATGATTAGTTGATAA
66 CTTGTGTTTGATGATTAGTTGATAA
62459784 GTTTGGCATG
Statistics
Matches: 86, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
99 86 1.00
ACGTcount: A:0.27, C:0.08, G:0.23, T:0.42
Consensus pattern (99 bp):
ATCTAATGATTATATCAATAGTTTTTGATATTTTGGCCGAGGTTATAATGGCATGTATAGGTAGA
CTTGTGTTTGATGATTAGTTGATAAATTCACACT
Found at i:62474277 original size:35 final size:35
Alignment explanation
Indices: 62474202--62474340 Score: 122
Period size: 35 Copynumber: 4.0 Consensus size: 35
62474192 TCACATATGG
* * * * *
62474202 TCGAATATGCATTTTTAAGATAACTTCACATAT-A
1 TCGAATATACAATTTCAATATAACTTCACATGTAA
*
62474236 TCCGAATATACAATTTCAATATAAGTTCACATGTAA
1 T-CGAATATACAATTTCAATATAACTTCACATGTAA
* * * *
62474272 TCGAATACTA-AAATTCAATATAACCTCACATGCAG
1 TCGAATA-TACAATTTCAATATAACTTCACATGTAA
* *
62474307 CCGAATATACAAGTTCAATATAAGCTT-ACATGTA
1 TCGAATATACAATTTCAATATAA-CTTCACATGTA
62474341 CTTACTTATG
Statistics
Matches: 85, Mismatches: 15, Indels: 9
0.78 0.14 0.08
Matches are distributed among these distances:
34 3 0.04
35 76 0.89
36 6 0.07
ACGTcount: A:0.41, C:0.18, G:0.09, T:0.32
Consensus pattern (35 bp):
TCGAATATACAATTTCAATATAACTTCACATGTAA
Found at i:62479172 original size:23 final size:23
Alignment explanation
Indices: 62479141--62479209 Score: 120
Period size: 23 Copynumber: 3.0 Consensus size: 23
62479131 CTTAGCCTCT
* *
62479141 TTTAGTAACTGGGGCAAAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
62479164 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
62479187 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
62479210 ATTTGCACTT
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 44 1.00
ACGTcount: A:0.30, C:0.22, G:0.23, T:0.25
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Found at i:62479292 original size:20 final size:20
Alignment explanation
Indices: 62479267--62479329 Score: 108
Period size: 20 Copynumber: 3.1 Consensus size: 20
62479257 GAATACATCT
62479267 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
*
62479287 TGTGCATATCATACATGTCA
1 TGTGCATATCATACATATCA
*
62479307 TGTGCATATCATACATACCA
1 TGTGCATATCATACATATCA
62479327 TGT
1 TGT
62479330 ATAAGGGCAC
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 40 1.00
ACGTcount: A:0.32, C:0.21, G:0.13, T:0.35
Consensus pattern (20 bp):
TGTGCATATCATACATATCA
Found at i:62485698 original size:23 final size:23
Alignment explanation
Indices: 62485644--62485713 Score: 95
Period size: 23 Copynumber: 3.0 Consensus size: 23
62485634 CCTAGCCTCT
* * *
62485644 TTTAGTAACTGGGGCAAAAGACCT
1 TTTAATAACTGGGGCATAAG-CCC
62485668 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
*
62485691 TTTAATAATTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
62485714 ATTTGCACTT
Statistics
Matches: 42, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
23 24 0.57
24 18 0.43
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.27
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Found at i:62485832 original size:20 final size:20
Alignment explanation
Indices: 62485767--62485826 Score: 95
Period size: 20 Copynumber: 3.0 Consensus size: 20
62485757 TTATGAATAC
*
62485767 ATCATGTGCATA-CATACGT
1 ATCATGTGCATATCATACAT
62485786 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
62485806 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
62485826 A
1 A
62485827 CTATGTTTAT
Statistics
Matches: 37, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
19 12 0.32
20 25 0.68
ACGTcount: A:0.33, C:0.20, G:0.13, T:0.33
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:62485896 original size:25 final size:25
Alignment explanation
Indices: 62485868--62485915 Score: 87
Period size: 25 Copynumber: 1.9 Consensus size: 25
62485858 TTACAAAAAC
*
62485868 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGTAAAATGGTCATTTTTA
62485893 CCTAGGGGTAAAATGGTCATTTT
1 CCTAGGGGTAAAATGGTCATTTT
62485916 CATATTATAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.25, C:0.12, G:0.25, T:0.38
Consensus pattern (25 bp):
CCTAGGGGTAAAATGGTCATTTTTA
Found at i:62503674 original size:23 final size:23
Alignment explanation
Indices: 62503629--62503675 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
62503619 AAGTTTCTAA
* *
62503629 TTTTTTATCTTAAATATTTTAAT
1 TTTTTTATATTAAATATTATAAT
62503652 TTTTTTATAATTAAAT-TTATAAT
1 TTTTTTAT-ATTAAATATTATAAT
62503675 T
1 T
62503676 ATTAAATTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
23 15 0.71
24 6 0.29
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.64
Consensus pattern (23 bp):
TTTTTTATATTAAATATTATAAT
Found at i:62505489 original size:30 final size:30
Alignment explanation
Indices: 62505453--62505518 Score: 123
Period size: 30 Copynumber: 2.2 Consensus size: 30
62505443 GTGCTAAGGT
*
62505453 CGTGTCCTTCATACGGTTGAGACACACGGC
1 CGTGTCCTTCATACGGTTGAGACACACAGC
62505483 CGTGTCCTTCATACGGTTGAGACACACAGC
1 CGTGTCCTTCATACGGTTGAGACACACAGC
62505513 CGTGTC
1 CGTGTC
62505519 TCTACCCGTG
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 35 1.00
ACGTcount: A:0.20, C:0.30, G:0.26, T:0.24
Consensus pattern (30 bp):
CGTGTCCTTCATACGGTTGAGACACACAGC
Found at i:62506301 original size:33 final size:33
Alignment explanation
Indices: 62506252--62506355 Score: 156
Period size: 33 Copynumber: 3.2 Consensus size: 33
62506242 AATATGCAAA
*
62506252 ACAGTCTGGGCTTTAGCCCTATACAGTATCAGT
1 ACAGTCTGGGCCTTAGCCCTATACAGTATCAGT
*
62506285 AGAGTCTGGGCCTTAGCCCTATACAGTATCAGT
1 ACAGTCTGGGCCTTAGCCCTATACAGTATCAGT
* *
62506318 ACAGTTTGGGCCTAAG-CCTAATACAGTATCAGT
1 ACAGTCTGGGCCTTAGCCCT-ATACAGTATCAGT
62506351 ACAGT
1 ACAGT
62506356 GTAATGCAAT
Statistics
Matches: 65, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
32 3 0.05
33 62 0.95
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.28
Consensus pattern (33 bp):
ACAGTCTGGGCCTTAGCCCTATACAGTATCAGT
Found at i:62506831 original size:27 final size:27
Alignment explanation
Indices: 62506798--62506884 Score: 86
Period size: 27 Copynumber: 3.2 Consensus size: 27
62506788 AAAAACAGTC
* * **
62506798 ATTTTACCCTACACGGGTATTTCGGTA
1 ATTTTACACTACAAGGGTATTTCAATA
62506825 ATTTTACACTACAAGGGTATTTCAATA
1 ATTTTACACTACAAGGGTATTTCAATA
* * * *
62506852 ATTTTATA-AATCGAGGGTATTTCAGTA
1 ATTTTACACTA-CAAGGGTATTTCAATA
62506879 ATTTTA
1 ATTTTA
62506885 TAATTTGGGG
Statistics
Matches: 51, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
26 1 0.02
27 50 0.98
ACGTcount: A:0.31, C:0.14, G:0.15, T:0.40
Consensus pattern (27 bp):
ATTTTACACTACAAGGGTATTTCAATA
Found at i:62506885 original size:27 final size:28
Alignment explanation
Indices: 62506807--62506887 Score: 94
Period size: 27 Copynumber: 3.0 Consensus size: 28
62506797 CATTTTACCC
* * * *
62506807 TACACGGGTATTTCGGTAATTTTA-CAC
1 TACAAGGGTATTTCAGTAATTTTATAAA
*
62506834 TACAAGGGTATTTCAATAATTTTATAAA
1 TACAAGGGTATTTCAGTAATTTTATAAA
*
62506862 T-CGAGGGTATTTCAGTAATTTTATAA
1 TACAAGGGTATTTCAGTAATTTTATAA
62506888 TTTGGGGTCT
Statistics
Matches: 46, Mismatches: 7, Indels: 2
0.84 0.13 0.04
Matches are distributed among these distances:
27 44 0.96
28 2 0.04
ACGTcount: A:0.33, C:0.11, G:0.16, T:0.40
Consensus pattern (28 bp):
TACAAGGGTATTTCAGTAATTTTATAAA
Found at i:62509458 original size:33 final size:33
Alignment explanation
Indices: 62509421--62509507 Score: 94
Period size: 28 Copynumber: 2.8 Consensus size: 33
62509411 AGTCTGGGTT
62509421 TTAGCCCTATACAGTATCAGTACAGTCTAGGCC
1 TTAGCCCTATACAGTATCAGTACAGTCTAGGCC
* * *
62509454 TTAGCCCTATACA--AT-A--ACACTGTGGGCC
1 TTAGCCCTATACAGTATCAGTACAGTCTAGGCC
* *
62509482 TAAGCCCAATACAGTATCAGTACAGT
1 TTAGCCCTATACAGTATCAGTACAGT
62509508 GTAATGCAAT
Statistics
Matches: 43, Mismatches: 6, Indels: 10
0.73 0.10 0.17
Matches are distributed among these distances:
28 20 0.47
30 3 0.07
31 3 0.07
33 17 0.40
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.25
Consensus pattern (33 bp):
TTAGCCCTATACAGTATCAGTACAGTCTAGGCC
Found at i:62509981 original size:27 final size:26
Alignment explanation
Indices: 62509951--62510036 Score: 102
Period size: 27 Copynumber: 3.2 Consensus size: 26
62509941 CAAAACAGTC
62509951 ATTTTACCCTACAAGGGTATTTCGGTA
1 ATTTTACCC-ACAAGGGTATTTCGGTA
*
62509978 ATTTTACACCACAAGGGTATTTCGATA
1 ATTTTAC-CCACAAGGGTATTTCGGTA
***
62510005 ATTTTATAAACAGAGGGTATTTCGGT-
1 ATTTTACCCACA-AGGGTATTTCGGTA
62510031 ATTTTA
1 ATTTTA
62510037 TAATCCGAGG
Statistics
Matches: 52, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
26 9 0.17
27 41 0.79
28 2 0.04
ACGTcount: A:0.30, C:0.14, G:0.17, T:0.38
Consensus pattern (26 bp):
ATTTTACCCACAAGGGTATTTCGGTA
Found at i:62510046 original size:26 final size:27
Alignment explanation
Indices: 62509964--62510046 Score: 89
Period size: 27 Copynumber: 3.1 Consensus size: 27
62509954 TTACCCTACA
* * *
62509964 AGGGTATTTCGGTAATTTTA-CACCACA
1 AGGGTATTTCGGTAATTTTATAAAC-CG
* *
62509991 AGGGTATTTCGATAATTTTATAAACAG
1 AGGGTATTTCGGTAATTTTATAAACCG
*
62510018 AGGGTATTTCGGT-ATTTTATAATCCG
1 AGGGTATTTCGGTAATTTTATAAACCG
62510044 AGG
1 AGG
62510047 TCTTAACGAC
Statistics
Matches: 47, Mismatches: 8, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
26 14 0.30
27 31 0.66
28 2 0.04
ACGTcount: A:0.30, C:0.12, G:0.22, T:0.36
Consensus pattern (27 bp):
AGGGTATTTCGGTAATTTTATAAACCG
Found at i:62515070 original size:26 final size:26
Alignment explanation
Indices: 62515041--62515090 Score: 68
Period size: 26 Copynumber: 1.9 Consensus size: 26
62515031 TTTTCATTAC
62515041 ATTTTAT-AGTTTTT-AGATTAATTTTT
1 ATTTTATCA-TTTTTAAG-TTAATTTTT
62515067 ATTTTATCATTTTTAAGTTAATTT
1 ATTTTATCATTTTTAAGTTAATTT
62515091 GAGTTCACTT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.28, C:0.02, G:0.06, T:0.64
Consensus pattern (26 bp):
ATTTTATCATTTTTAAGTTAATTTTT
Found at i:62517278 original size:37 final size:37
Alignment explanation
Indices: 62517223--62517297 Score: 141
Period size: 37 Copynumber: 2.0 Consensus size: 37
62517213 ATTTAAGCTC
*
62517223 ATTGGACCTATTAGAACTTCAAAGGATAATCGAGTGA
1 ATTGAACCTATTAGAACTTCAAAGGATAATCGAGTGA
62517260 ATTGAACCTATTAGAACTTCAAAGGATAATCGAGTGA
1 ATTGAACCTATTAGAACTTCAAAGGATAATCGAGTGA
62517297 A
1 A
62517298 CAATGTCAGT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.40, C:0.13, G:0.20, T:0.27
Consensus pattern (37 bp):
ATTGAACCTATTAGAACTTCAAAGGATAATCGAGTGA
Found at i:62517431 original size:22 final size:22
Alignment explanation
Indices: 62517376--62517431 Score: 78
Period size: 23 Copynumber: 2.5 Consensus size: 22
62517366 GAGCTGATGT
*
62517376 ACAGTAAGCTTTATTGAGCTGA
1 ACAGTAAGCTCTATTGAGCTGA
62517398 A-ACGATAAGCTCTATTGAGCTGA
1 ACA-G-TAAGCTCTATTGAGCTGA
62517421 ACAGTAAGCTC
1 ACAGTAAGCTC
62517432 ATACGATCTG
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
21 1 0.03
22 9 0.30
23 19 0.63
24 1 0.03
ACGTcount: A:0.34, C:0.18, G:0.21, T:0.27
Consensus pattern (22 bp):
ACAGTAAGCTCTATTGAGCTGA
Found at i:62517443 original size:45 final size:46
Alignment explanation
Indices: 62517394--62517484 Score: 105
Period size: 45 Copynumber: 2.0 Consensus size: 46
62517384 CTTTATTGAG
*
62517394 CTGAAACGATAAGC-TCTATTGAGCTG-AACAGTAAGCTCATACGAT
1 CTGAAACGATAAGCTTC-AATGAGCTGAAACAGTAAGCTCATACGAT
* * * *
62517439 CTGAAATGGTAAGCTTCAATGAGCTGAAAATAGTAAGCTCTTACGA
1 CTGAAACGATAAGCTTCAATGAGCTG-AAACAGTAAGCTCATACGA
62517485 GCTAATATAT
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
45 20 0.53
46 2 0.05
47 16 0.42
ACGTcount: A:0.36, C:0.18, G:0.21, T:0.25
Consensus pattern (46 bp):
CTGAAACGATAAGCTTCAATGAGCTGAAACAGTAAGCTCATACGAT
Found at i:62517453 original size:23 final size:23
Alignment explanation
Indices: 62517391--62517514 Score: 76
Period size: 23 Copynumber: 5.3 Consensus size: 23
62517381 AAGCTTTATT
* * *
62517391 GAGCTGAAACGATAAGCTC-TATT
1 GAGCTGAAATGGTAAGCTCATA-C
62517414 GAGCTGAACA--GTAAGCTCATAC
1 GAGCTGAA-ATGGTAAGCTCATAC
* *
62517436 GATCTGAAATGGTAAGCTTCA-AT
1 GAGCTGAAATGGTAAGC-TCATAC
* *
62517459 GAGCTGAAAATAGTAAGCTCTTAC
1 GAGCTG-AAATGGTAAGCTCATAC
* *
62517483 GAGCTAATATATCGGTAAGCTCATAT
1 GAGCTGA-A-AT-GGTAAGCTCATAC
62517509 GAGCTG
1 GAGCTG
62517515 TGGTGAGTCT
Statistics
Matches: 78, Mismatches: 13, Indels: 17
0.72 0.12 0.16
Matches are distributed among these distances:
21 1 0.01
22 14 0.18
23 25 0.32
24 21 0.27
25 2 0.03
26 15 0.19
ACGTcount: A:0.35, C:0.17, G:0.23, T:0.26
Consensus pattern (23 bp):
GAGCTGAAATGGTAAGCTCATAC
Found at i:62517486 original size:24 final size:23
Alignment explanation
Indices: 62517414--62517487 Score: 62
Period size: 24 Copynumber: 3.2 Consensus size: 23
62517404 AAGCTCTATT
* *
62517414 GAGCTG-AACAGTAAGCTCATAC
1 GAGCTGAAATAGTAAGCTCTTAC
* * * *
62517436 GATCTGAAATGGTAAGCT-TCAAT
1 GAGCTGAAATAGTAAGCTCT-TAC
62517459 GAGCTGAAAATAGTAAGCTCTTAC
1 GAGCTG-AAATAGTAAGCTCTTAC
62517483 GAGCT
1 GAGCT
62517488 AATATATCGG
Statistics
Matches: 38, Mismatches: 10, Indels: 6
0.70 0.19 0.11
Matches are distributed among these distances:
22 5 0.13
23 15 0.39
24 17 0.45
25 1 0.03
ACGTcount: A:0.35, C:0.18, G:0.23, T:0.24
Consensus pattern (23 bp):
GAGCTGAAATAGTAAGCTCTTAC
Found at i:62518057 original size:15 final size:15
Alignment explanation
Indices: 62518037--62518066 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
62518027 CACTTTTAAC
62518037 CACATAATTTTACAA
1 CACATAATTTTACAA
62518052 CACATAATTTTACAA
1 CACATAATTTTACAA
62518067 TTTCACAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.47, C:0.20, G:0.00, T:0.33
Consensus pattern (15 bp):
CACATAATTTTACAA
Found at i:62523962 original size:64 final size:64
Alignment explanation
Indices: 62523851--62524015 Score: 197
Period size: 64 Copynumber: 2.6 Consensus size: 64
62523841 GGAAACTTTT
* ** * * ** **
62523851 GCTTTGTAGAGGTTCATTGGATTAGAATGGGGTTTCAGTATTGAATATTGTTAAGTAAATTATG
1 GCTTTGCAGAGGTTCGGTGGATGAGAATGGGGTTTCAATATCAAATATCATTAAGTAAATTATG
* *
62523915 GCTTTGC-GAAGGTTTGGTGGATGAGAATGGGGTTTGAATATCAAATATCATTAAGTAAATTATG
1 GCTTTGCAG-AGGTTCGGTGGATGAGAATGGGGTTTCAATATCAAATATCATTAAGTAAATTATG
* *
62523979 GCTTTGCAGAGGTTCGGTGCATGAGAATGGCGTTTCA
1 GCTTTGCAGAGGTTCGGTGGATGAGAATGGGGTTTCA
62524016 GTATAAGAAG
Statistics
Matches: 84, Mismatches: 15, Indels: 4
0.82 0.15 0.04
Matches are distributed among these distances:
63 1 0.01
64 82 0.98
65 1 0.01
ACGTcount: A:0.27, C:0.08, G:0.29, T:0.36
Consensus pattern (64 bp):
GCTTTGCAGAGGTTCGGTGGATGAGAATGGGGTTTCAATATCAAATATCATTAAGTAAATTATG
Found at i:62524325 original size:43 final size:43
Alignment explanation
Indices: 62524270--62524556 Score: 466
Period size: 43 Copynumber: 6.7 Consensus size: 43
62524260 GAAAAAGACA
62524270 CCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGGAAAAGCG
1 CCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGGAAAAGCG
*
62524313 CCGCTAAAGGTCAAGGCTTTTAGTGGCGTTTGTGGGAAAAGCG
1 CCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGGAAAAGCG
62524356 CCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGGAAAAGCG
1 CCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGGAAAAGCG
* ** *
62524399 CCACTAAACATCAAGGCTTTTAGCGGCGTTTGTGGTAAAAGCG
1 CCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGGAAAAGCG
* * *
62524442 CCGCTAAACGTCAAGGCTTTTTAGCGGCGTTTGTGGTAAAAGTG
1 CCGCTAAAGGTCAAGGC-TTTTAGCGGCGTTTGTGGGAAAAGCG
* *
62524486 CCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGCGTAAAGCG
1 CCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGGAAAAGCG
*
62524529 CCGCTAAACGTCAAGGCTTTTAGCGGCG
1 CCGCTAAAGGTCAAGGCTTTTAGCGGCG
62524557 CTTTTTTTAC
Statistics
Matches: 228, Mismatches: 15, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
43 187 0.82
44 41 0.18
ACGTcount: A:0.23, C:0.20, G:0.32, T:0.25
Consensus pattern (43 bp):
CCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGGAAAAGCG
Found at i:62524577 original size:130 final size:129
Alignment explanation
Indices: 62524270--62524556 Score: 475
Period size: 130 Copynumber: 2.2 Consensus size: 129
62524260 GAAAAAGACA
* * *
62524270 CCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCAAGGCTTTTA
1 CCGCTAAACGTCAAGGCTTTTAGCGGCGTTTGTGGTAAAAGCGCCGCTAAACGTCAAGGCTTTTA
* *
62524335 GTGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGGAAAAGCG
66 GCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGCGAAAAGCG
* *
62524399 CCACTAAACATCAAGGCTTTTAGCGGCGTTTGTGGTAAAAGCGCCGCTAAACGTCAAGGCTTTTT
1 CCGCTAAACGTCAAGGCTTTTAGCGGCGTTTGTGGTAAAAGCGCCGCTAAACGTCAAGGC-TTTT
* * *
62524464 AGCGGCGTTTGTGGTAAAAGTGCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGCGTAAAGCG
65 AGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGCGAAAAGCG
62524529 CCGCTAAACGTCAAGGCTTTTAGCGGCG
1 CCGCTAAACGTCAAGGCTTTTAGCGGCG
62524557 CTTTTTTTAC
Statistics
Matches: 145, Mismatches: 12, Indels: 1
0.92 0.08 0.01
Matches are distributed among these distances:
129 55 0.38
130 90 0.62
ACGTcount: A:0.23, C:0.20, G:0.32, T:0.25
Consensus pattern (129 bp):
CCGCTAAACGTCAAGGCTTTTAGCGGCGTTTGTGGTAAAAGCGCCGCTAAACGTCAAGGCTTTTA
GCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGCGAAAAGCG
Found at i:62524666 original size:31 final size:31
Alignment explanation
Indices: 62524631--62524697 Score: 80
Period size: 31 Copynumber: 2.2 Consensus size: 31
62524621 CTTCCTGCAT
* *
62524631 TAAAATCCAACCAAATACAACAAATATAATA
1 TAAAATCCAACCAAAAACAACAAATATAACA
* * * *
62524662 TAAAATGCAGCCAAAAACAGCAAATTTAACA
1 TAAAATCCAACCAAAAACAACAAATATAACA
62524693 TAAAA
1 TAAAA
62524698 ATATAACCAA
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.60, C:0.18, G:0.04, T:0.18
Consensus pattern (31 bp):
TAAAATCCAACCAAAAACAACAAATATAACA
Found at i:62525001 original size:21 final size:21
Alignment explanation
Indices: 62524951--62525001 Score: 50
Period size: 21 Copynumber: 2.4 Consensus size: 21
62524941 CCATCGCTCA
**
62524951 TGCCTCTGCCTCTTTCGCTGC
1 TGCCTCTGCCTCCCTCGCTGC
* *
62524972 AG-CTGCTGCCTCCCTCTCTGC
1 TGCCT-CTGCCTCCCTCGCTGC
62524993 TGCCTCTGC
1 TGCCTCTGC
62525002 TCTAAGTTGT
Statistics
Matches: 23, Mismatches: 5, Indels: 4
0.72 0.16 0.12
Matches are distributed among these distances:
20 2 0.09
21 19 0.83
22 2 0.09
ACGTcount: A:0.02, C:0.45, G:0.20, T:0.33
Consensus pattern (21 bp):
TGCCTCTGCCTCCCTCGCTGC
Found at i:62530375 original size:79 final size:81
Alignment explanation
Indices: 62530273--62530457 Score: 236
Period size: 79 Copynumber: 2.3 Consensus size: 81
62530263 GCTCCTCGTT
* *
62530273 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
62530336 GGATTTAGTAAC-TCGCA
64 GGATATAGTAACTTAGCA
* **
62530353 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
* *
62530417 ATATGGTCACTTAGCA
66 ATATAGTAACTTAGCA
62530433 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
62530458 CATCATTCAA
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 55 0.60
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
ATATAGTAACTTAGCA
Found at i:62530457 original size:40 final size:40
Alignment explanation
Indices: 62530273--62530457 Score: 234
Period size: 40 Copynumber: 4.7 Consensus size: 40
62530263 GCTCCTCGTT
* *
62530273 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
62530313 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
*
62530353 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * * *
62530392 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
62530433 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
62530458 CATCATTCAA
Statistics
Matches: 126, Mismatches: 13, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
38 2 0.02
39 32 0.25
40 80 0.63
41 12 0.10
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:62533752 original size:9 final size:9
Alignment explanation
Indices: 62533738--62534008 Score: 188
Period size: 9 Copynumber: 29.6 Consensus size: 9
62533728 TATTTAAGTA
62533738 TTATGTAAG
1 TTATGTAAG
*
62533747 TTATGTAAT
1 TTATGTAAG
*
62533756 TTATGATATG
1 TTATG-TAAG
* * *
62533766 ATATAT-AT
1 TTATGTAAG
*
62533774 TTATGTAAA
1 TTATGTAAG
* *
62533783 TTATAT-AT
1 TTATGTAAG
*
62533791 TTATCTAAG
1 TTATGTAAG
*
62533800 TTATATAAG
1 TTATGTAAG
62533809 TTATGTAAG
1 TTATGTAAG
*
62533818 TTATGTAAA
1 TTATGTAAG
*
62533827 TTATGATATAAAA
1 TTATG---T-AAG
*
62533840 TATATTTAAG
1 T-TATGTAAG
62533850 TATTATGTAAG
1 --TTATGTAAG
62533861 TTATGTAAG
1 TTATGTAAG
* *
62533870 TTATAT-AT
1 TTATGTAAG
*
62533878 TTATCTAAG
1 TTATGTAAG
*
62533887 TTATATAAG
1 TTATGTAAG
*
62533896 TTATATAAG
1 TTATGTAAG
*
62533905 TTATGTATG
1 TTATGTAAG
*
62533914 TTATATAAG
1 TTATGTAAG
62533923 TTATGTAAG
1 TTATGTAAG
* *
62533932 TTATATATG
1 TTATGTAAG
*
62533941 TTATATAAG
1 TTATGTAAG
62533950 TTATGTAAG
1 TTATGTAAG
*
62533959 TTATATAAG
1 TTATGTAAG
*
62533968 TTATATAAG
1 TTATGTAAG
*
62533977 TTATGTACG
1 TTATGTAAG
*
62533986 TTTTGTAAG
1 TTATGTAAG
* *
62533995 TTATATAAA
1 TTATGTAAG
62534004 TTATG
1 TTATG
62534009 ATATCAAATA
Statistics
Matches: 208, Mismatches: 43, Indels: 22
0.76 0.16 0.08
Matches are distributed among these distances:
8 16 0.08
9 168 0.81
10 7 0.03
11 8 0.04
12 2 0.01
13 4 0.02
14 3 0.01
ACGTcount: A:0.38, C:0.01, G:0.13, T:0.48
Consensus pattern (9 bp):
TTATGTAAG
Found at i:62533817 original size:18 final size:18
Alignment explanation
Indices: 62533738--62534008 Score: 207
Period size: 18 Copynumber: 15.3 Consensus size: 18
62533728 TATTTAAGTA
* *
62533738 TTATGTAAGTTATGTAAT
1 TTATGTAAGTTATATAAG
* * *
62533756 TTATGATATGATATAT-AT
1 TTATG-TAAGTTATATAAG
* *
62533774 TTATGTAAATTATAT-AT
1 TTATGTAAGTTATATAAG
*
62533791 TTATCTAAGTTATATAAG
1 TTATGTAAGTTATATAAG
* *
62533809 TTATGTAAGTTATGTAAA
1 TTATGTAAGTTATATAAG
*
62533827 TTATG--A--TATA-AAA
1 TTATGTAAGTTATATAAG
* *
62533840 TATATTTAAGTATTATGTAAG
1 T-TATGTAAG--TTATATAAG
*
62533861 TTATGTAAGTTATAT-AT
1 TTATGTAAGTTATATAAG
*
62533878 TTATCTAAGTTATATAAG
1 TTATGTAAGTTATATAAG
* * *
62533896 TTATATAAGTTATGTATG
1 TTATGTAAGTTATATAAG
* *
62533914 TTATATAAGTTATGTAAG
1 TTATGTAAGTTATATAAG
* *
62533932 TTATATATGTTATATAAG
1 TTATGTAAGTTATATAAG
62533950 TTATGTAAGTTATATAAG
1 TTATGTAAGTTATATAAG
* * *
62533968 TTATATAAGTTATGTACG
1 TTATGTAAGTTATATAAG
* *
62533986 TTTTGTAAGTTATATAAA
1 TTATGTAAGTTATATAAG
62534004 TTATG
1 TTATG
62534009 ATATCAAATA
Statistics
Matches: 204, Mismatches: 38, Indels: 22
0.77 0.14 0.08
Matches are distributed among these distances:
13 4 0.02
14 6 0.03
16 2 0.01
17 37 0.18
18 135 0.66
19 7 0.03
20 10 0.05
21 3 0.01
ACGTcount: A:0.38, C:0.01, G:0.13, T:0.48
Consensus pattern (18 bp):
TTATGTAAGTTATATAAG
Found at i:62533830 original size:27 final size:27
Alignment explanation
Indices: 62533791--62534008 Score: 222
Period size: 27 Copynumber: 7.9 Consensus size: 27
62533781 AATTATATAT
*
62533791 TTATCTAAGTTATATAAGTTATGTAAG
1 TTATGTAAGTTATATAAGTTATGTAAG
* * *
62533818 TTATGTAAATTATGATATAAAATATATTTAAG
1 TTATGT-AAGT-T-ATAT-AAGT-TATGTAAG
* * *
62533850 TATTATGTAAGTTATGTAAGTTATAT-AT
1 --TTATGTAAGTTATATAAGTTATGTAAG
* *
62533878 TTATCTAAGTTATATAAGTTATATAAG
1 TTATGTAAGTTATATAAGTTATGTAAG
*
62533905 TTATGTATGTTATATAAGTTATGTAAG
1 TTATGTAAGTTATATAAGTTATGTAAG
* *
62533932 TTATATATGTTATATAAGTTATGTAAG
1 TTATGTAAGTTATATAAGTTATGTAAG
* *
62533959 TTATATAAGTTATATAAGTTATGTACG
1 TTATGTAAGTTATATAAGTTATGTAAG
* *
62533986 TTTTGTAAGTTATATAAATTATG
1 TTATGTAAGTTATATAAGTTATG
62534009 ATATCAAATA
Statistics
Matches: 162, Mismatches: 21, Indels: 16
0.81 0.11 0.08
Matches are distributed among these distances:
26 22 0.14
27 101 0.62
28 4 0.02
29 5 0.03
30 7 0.04
31 6 0.04
32 8 0.05
33 3 0.02
34 6 0.04
ACGTcount: A:0.38, C:0.01, G:0.14, T:0.47
Consensus pattern (27 bp):
TTATGTAAGTTATATAAGTTATGTAAG
Found at i:62533848 original size:114 final size:114
Alignment explanation
Indices: 62533714--62533935 Score: 313
Period size: 114 Copynumber: 1.9 Consensus size: 114
62533704 ACTAGTTATG
* * * *
62533714 TATGATATGATATATATTTAAGTATTATGTAAGTTATGTAATTTATGATATGATATAT-ATTTAT
1 TATGATATAAAATATATTTAAGTATTATGTAAGTTATGTAAGTTAT-ATAT-ATATATAAGTTAT
* *
62533778 GTAAATTATAT-ATTTATCTAAGTTATATAAGTTATGTAAGTTATGTAAAT
64 ATAAATTATATAAGTTATCTAAGTTATATAAGTTATGTAAGTTATGTAAAT
* *
62533828 TATGATATAAAATATATTTAAGTATTATGTAAGTTATGTAAGTTATATATTTATCTAAGTTATAT
1 TATGATATAAAATATATTTAAGTATTATGTAAGTTATGTAAGTTATATATATATATAAGTTATAT
* * *
62533893 AAGTTATATAAGTTATGTATGTTATATAAGTTATGTAAGTTAT
66 AAATTATATAAGTTATCTAAGTTATATAAGTTATGTAAGTTAT
62533936 ATATGTTATA
Statistics
Matches: 95, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
112 4 0.04
113 18 0.19
114 73 0.77
ACGTcount: A:0.39, C:0.01, G:0.13, T:0.48
Consensus pattern (114 bp):
TATGATATAAAATATATTTAAGTATTATGTAAGTTATGTAAGTTATATATATATATAAGTTATAT
AAATTATATAAGTTATCTAAGTTATATAAGTTATGTAAGTTATGTAAAT
Found at i:62534133 original size:15 final size:15
Alignment explanation
Indices: 62534113--62534142 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
62534103 AAGTAGCGGG
62534113 ATTAAATAATATTTA
1 ATTAAATAATATTTA
62534128 ATTAAATAATATTTA
1 ATTAAATAATATTTA
62534143 TAAAAATTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (15 bp):
ATTAAATAATATTTA
Found at i:62538681 original size:10 final size:11
Alignment explanation
Indices: 62538660--62538710 Score: 57
Period size: 12 Copynumber: 4.3 Consensus size: 11
62538650 ACTAAACCAC
62538660 TTTTCATATATA
1 TTTT-ATATATA
62538672 TATTTATATATA
1 T-TTTATATATA
*
62538684 TTTTAAAATAATA
1 TTTT-ATAT-ATA
62538697 TTTTATATATA
1 TTTTATATATA
62538708 TTT
1 TTT
62538711 ATCTTATATA
Statistics
Matches: 34, Mismatches: 2, Indels: 7
0.79 0.05 0.16
Matches are distributed among these distances:
11 9 0.26
12 15 0.44
13 10 0.29
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (11 bp):
TTTTATATATA
Found at i:62538719 original size:15 final size:15
Alignment explanation
Indices: 62538699--62538730 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
62538689 AAATAATATT
*
62538699 TTATATATATTTATC
1 TTATATACATTTATC
62538714 TTATATACATTTATC
1 TTATATACATTTATC
62538729 TT
1 TT
62538731 CTAAATTAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.31, C:0.09, G:0.00, T:0.59
Consensus pattern (15 bp):
TTATATACATTTATC
Found at i:62539799 original size:41 final size:41
Alignment explanation
Indices: 62539742--62539960 Score: 334
Period size: 41 Copynumber: 5.4 Consensus size: 41
62539732 GTTATGAGAT
62539742 TTTTAGCGGCGTTTTACCGAAAGCGCTGCTAATGCTCTGGC
1 TTTTAGCGGCGTTTTACCGAAAGCGCTGCTAATGCTCTGGC
* * *
62539783 TTTTAGCTGCGTTTTACCTAACGCG-TCGCTAATGCTCTGGC
1 TTTTAGCGGCGTTTTACCGAAAGCGCT-GCTAATGCTCTGGC
*
62539824 TTTTAGCGGCGTTTTACCGAAAGCGCCGCTAATGCTCTGGC
1 TTTTAGCGGCGTTTTACCGAAAGCGCTGCTAATGCTCTGGC
* *
62539865 TTTTAGCGGCGTTTTACAGAAAGCGCCGCTAATGCTCTGGC
1 TTTTAGCGGCGTTTTACCGAAAGCGCTGCTAATGCTCTGGC
* * *
62539906 TTTTAGCGGCGTTTTACAGAAAGCACTGCTAATGCTCT-GT
1 TTTTAGCGGCGTTTTACCGAAAGCGCTGCTAATGCTCTGGC
62539946 TTTTAGCGGCGTTTT
1 TTTTAGCGGCGTTTT
62539961 TTACTAAAAC
Statistics
Matches: 165, Mismatches: 11, Indels: 5
0.91 0.06 0.03
Matches are distributed among these distances:
40 17 0.10
41 148 0.90
ACGTcount: A:0.17, C:0.24, G:0.25, T:0.34
Consensus pattern (41 bp):
TTTTAGCGGCGTTTTACCGAAAGCGCTGCTAATGCTCTGGC
Found at i:62549906 original size:15 final size:16
Alignment explanation
Indices: 62549886--62549923 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
62549876 AATTAGAAAG
62549886 ATGAAAAGTT-ATTAA
1 ATGAAAAGTTAATTAA
**
62549901 ATGAAATTTTAATTAA
1 ATGAAAAGTTAATTAA
62549917 ATGAAAA
1 ATGAAAA
62549924 AGAAAATAAT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
15 8 0.42
16 11 0.58
ACGTcount: A:0.55, C:0.00, G:0.11, T:0.34
Consensus pattern (16 bp):
ATGAAAAGTTAATTAA
Found at i:62580059 original size:27 final size:27
Alignment explanation
Indices: 62579995--62580234 Score: 142
Period size: 27 Copynumber: 8.9 Consensus size: 27
62579985 AATACTTTAG
* *
62579995 TTTACAAAATTACTGAAA-TACCCTCAA
1 TTTACAAAATTAC-CAAATTACCCTCGA
* ** *
62580022 ATTGTAAAATTACCAAAGTACCCTCGA
1 TTTACAAAATTACCAAATTACCCTCGA
* * *** *
62580049 TTTATAGAATTACCGTTTTACCCTTGA
1 TTTACAAAATTACCAAATTACCCTCGA
***
62580076 TTTACAAAATTACCGTTTTACCCTCGA
1 TTTACAAAATTACCAAATTACCCTCGA
*** **** **
62580103 TTTATTGAATTACTGTTTTACCCTTAA
1 TTTACAAAATTACCAAATTACCCTCGA
* * **
62580130 TTTACACAATTACTATTTTACCCTCGA
1 TTTACAAAATTACCAAATTACCCTCGA
* *
62580157 TTTACAAAATTACTAAAATACCCTCGA
1 TTTACAAAATTACCAAATTACCCTCGA
* *
62580184 TTTACAAAATTACCAAAATACCCTTGA
1 TTTACAAAATTACCAAATTACCCTCGA
* *
62580211 -TTAGTAAAATTACCAAAATACCCT
1 TTTA-CAAAATTACCAAATTACCCT
62580235 AGTCTGTAAA
Statistics
Matches: 176, Mismatches: 35, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
26 6 0.03
27 170 0.97
ACGTcount: A:0.37, C:0.22, G:0.06, T:0.35
Consensus pattern (27 bp):
TTTACAAAATTACCAAATTACCCTCGA
Found at i:62580206 original size:81 final size:81
Alignment explanation
Indices: 62579995--62580377 Score: 234
Period size: 81 Copynumber: 4.7 Consensus size: 81
62579985 AATACTTTAG
* * * * ** * *
62579995 TTTACAAAATTACTGAAATACCCTCAAATTGTAAAATTACCAAAGTACCCTCGATTTATAGAATT
1 TTTACAAAATTACTGAAATACCCTCGATTTATAAAATTACCAAAATACCCTTAATTTACACAATT
* *
62580060 ACCGTTTTACCCTTGA
66 ACCATTTTACCCTCGA
* *** ** *****
62580076 TTTACAAAATTACCGTTTTACCCTCGATTTATTGAATTACTGTTTTACCCTTAATTTACACAATT
1 TTTACAAAATTACTGAAATACCCTCGATTTATAAAATTACCAAAATACCCTTAATTTACACAATT
*
62580141 ACTATTTTACCCTCGA
66 ACCATTTTACCCTCGA
* * *
62580157 TTTACAAAATTACTAAAATACCCTCGATTTACAAAATTACCAAAATACCCTTGATTAGTA-A-AA
1 TTTACAAAATTACTGAAATACCCTCGATTTATAAAATTACCAAAATACCCTTAATT--TACACAA
*** *
62580220 TTACCAAAATACCCTAG-
64 TTACCATTTTACCCTCGA
* ** * * * * * * * ** *
62580237 TCTGTAAAATTGCTAAAATACCCTTGGTTTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATT
1 TTTACAAAATTACTGAAATACCCTCGATTTATAAAATTACCAAAATACCCTTAATTTACACAATT
*** *
62580302 ACCAAAATACCACTAG-
66 ACCATTTTACC-CTCGA
*** * * * *
62580318 TTTGTGAAATTACCGAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTAATTTACA
1 TTTACAAAATTACTGAAATACCCTCGATTTATAAAATTACCAAAATACCCTTAATTTACA
62580378 AAGTTACAGA
Statistics
Matches: 234, Mismatches: 63, Indels: 10
0.76 0.21 0.03
Matches are distributed among these distances:
78 1 0.00
79 1 0.00
80 60 0.26
81 169 0.72
82 1 0.00
83 2 0.01
ACGTcount: A:0.38, C:0.21, G:0.07, T:0.34
Consensus pattern (81 bp):
TTTACAAAATTACTGAAATACCCTCGATTTATAAAATTACCAAAATACCCTTAATTTACACAATT
ACCATTTTACCCTCGA
Found at i:62580275 original size:80 final size:81
Alignment explanation
Indices: 62580162--62580370 Score: 287
Period size: 80 Copynumber: 2.6 Consensus size: 81
62580152 CTCGATTTAC
** *
62580162 AAAATTACTAAAATACCCTCGATTTACAAAATTACCAAAATA-CCCTTGATTAGTAAAATTACCA
1 AAAATTACTAAAATACCCTCGATTTGTAAAATTACCAAAATACCCCTAG-TTAGTAAAATTACCA
62580226 AAATACC-CTAGTCTGT
65 AAATACCACTAGTCTGT
* * * *
62580242 AAAATTGCTAAAATACCCTTGGTTTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAA
1 AAAATTACTAAAATACCCTCGATTTGTAAAATTACCAAAATACCCCTAGTTAGTAAAATTACCAA
*
62580307 AATACCACTAGTTTGT
66 AATACCACTAGTCTGT
* ** *
62580323 GAAATTACCGAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTA
1 AAAATTACTAAAATACCCTCGATTTGTAAAATTACCAAAATACCCCTA
62580371 ATTTACAAAG
Statistics
Matches: 112, Mismatches: 15, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
80 58 0.52
81 54 0.48
ACGTcount: A:0.42, C:0.21, G:0.08, T:0.29
Consensus pattern (81 bp):
AAAATTACTAAAATACCCTCGATTTGTAAAATTACCAAAATACCCCTAGTTAGTAAAATTACCAA
AATACCACTAGTCTGT
Found at i:62580281 original size:27 final size:27
Alignment explanation
Indices: 62580162--62580480 Score: 239
Period size: 27 Copynumber: 11.8 Consensus size: 27
62580152 CTCGATTTAC
* * * **
62580162 AAAATTACTAAAATACCCTCGATTTAC
1 AAAATTACCAAAATACCCTTGGTTTGT
* *
62580189 AAAATTACCAAAATACCCTTGATTAGT
1 AAAATTACCAAAATACCCTTGGTTTGT
* *
62580216 AAAATTACCAAAATACCC-TAGTCTGT
1 AAAATTACCAAAATACCCTTGGTTTGT
* *
62580242 AAAATTGCTAAAATACCCTTGGTTTGT
1 AAAATTACCAAAATACCCTTGGTTTGT
* *
62580269 AAAATTACCAAAATACCCCTAGTTTGT
1 AAAATTACCAAAATACCCTTGGTTTGT
*
62580296 AAAATTACCAAAATACCAC-TAGTTTGT
1 AAAATTACCAAAATACC-CTTGGTTTGT
* * ***
62580323 GAAATTACCGAAATACCCTCAATTTGT
1 AAAATTACCAAAATACCCTTGGTTTGT
* ** **
62580350 AAAATTACCAAAATACCCCTAATTTAC
1 AAAATTACCAAAATACCCTTGGTTTGT
* * *
62580377 AAAGTTA-CAGAAATACCCTTGACTTTCT
1 AAAATTACCA-AAATACCCTTG-GTTTGT
*** * **
62580405 AAAAATTATGGAAATACCATTGGTTTAC
1 -AAAATTACCAAAATACCCTTGGTTTGT
**
62580433 AAAATTACTGAAATACCCTTGGTTTGT
1 AAAATTACCAAAATACCCTTGGTTTGT
* * *
62580460 AGATTTACCAAAACACCCTTG
1 AAAATTACCAAAATACCCTTG
62580481 TAGGATGAAA
Statistics
Matches: 235, Mismatches: 50, Indels: 14
0.79 0.17 0.05
Matches are distributed among these distances:
26 23 0.10
27 189 0.80
28 7 0.03
29 16 0.07
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.30
Consensus pattern (27 bp):
AAAATTACCAAAATACCCTTGGTTTGT
Found at i:62580391 original size:81 final size:78
Alignment explanation
Indices: 62580162--62580395 Score: 272
Period size: 80 Copynumber: 2.9 Consensus size: 78
62580152 CTCGATTTAC
** * *
62580162 AAAATTACTAAAATACCCTCGATTTACAAAATTACCAAAATACCCTTGATTAGTAAAATTACCAA
1 AAAATTACTAAAATACCCTCGATTTGTAAAATTACCAAAATACCCCTAATT--TAAAATTACCAA
62580227 AATACCCTAGTCTGT
64 AATACCCTAGTCTGT
* * * *
62580242 AAAATTGCTAAAATACCCTTGGTTTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAA
1 AAAATTACTAAAATACCCTCGATTTGTAAAATTACCAAAATACCCCTA-ATT-TAAAATTACCAA
*
62580307 AATACCACTAGTTTGT
64 AATACC-CTAGTCTGT
* ** *
62580323 GAAATTACCGAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTAATTTACAAAGTTA-CAG
1 AAAATTACTAAAATACCCTCGATTTGTAAAATTACCAAAATACCCCTAATTTA-AAA-TTACCA-
62580387 AAATACCCT
63 AAATACCCT
62580396 TGACTTTCTA
Statistics
Matches: 132, Mismatches: 17, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
79 2 0.02
80 69 0.52
81 61 0.46
ACGTcount: A:0.42, C:0.21, G:0.08, T:0.29
Consensus pattern (78 bp):
AAAATTACTAAAATACCCTCGATTTGTAAAATTACCAAAATACCCCTAATTTAAAATTACCAAAA
TACCCTAGTCTGT
Found at i:62580602 original size:27 final size:26
Alignment explanation
Indices: 62580501--62580602 Score: 107
Period size: 27 Copynumber: 3.8 Consensus size: 26
62580491 TGACTAAAGT
* * *
62580501 ACCCCTATTAGGTAAAAAGACCGTAA
1 ACCCCTGTAAGGTAAAATGACCGTAA
62580527 AGCCCCTGTAAGGTAAAGA-GACCGTAAA
1 A-CCCCTGTAAGGTAAA-ATGACCGT-AA
* *
62580555 ACCCCTGTAGGGTAAAGTGACCGTAA
1 ACCCCTGTAAGGTAAAATGACCGTAA
*
62580581 TACCCCTGTATGGTAAAATGAC
1 -ACCCCTGTAAGGTAAAATGAC
62580603 GAATATGCCC
Statistics
Matches: 65, Mismatches: 6, Indels: 9
0.81 0.08 0.11
Matches are distributed among these distances:
26 3 0.05
27 58 0.89
28 4 0.06
ACGTcount: A:0.36, C:0.23, G:0.22, T:0.20
Consensus pattern (26 bp):
ACCCCTGTAAGGTAAAATGACCGTAA
Found at i:62581526 original size:25 final size:26
Alignment explanation
Indices: 62581403--62581564 Score: 215
Period size: 26 Copynumber: 6.3 Consensus size: 26
62581393 GAGGAAGTGC
62581403 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
* **
62581429 AAAAGGGCTTATGCCCTAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
* *
62581455 AAAATGGCTTATGCCCTAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
62581481 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
* **
62581507 AAAAGAGCTT-TGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
62581532 AAAAGGGCTT-TGCCCCAG-TTATT-
1 AAAAGGGCTTATGCCCCAGTTTATTG
62581555 AAAAGAGGCT
1 AAAAG-GGCT
62581565 AGGCCTCCAG
Statistics
Matches: 121, Mismatches: 14, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
23 5 0.04
24 7 0.06
25 30 0.25
26 79 0.65
ACGTcount: A:0.28, C:0.20, G:0.22, T:0.29
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATTG
Found at i:62581756 original size:42 final size:42
Alignment explanation
Indices: 62581697--62581790 Score: 161
Period size: 42 Copynumber: 2.2 Consensus size: 42
62581687 TAGTCTCCCC
* * *
62581697 AAATGGGCTTGCATACATTCATTGGTATTTCATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGGCATTACATGTGATATTG
62581739 AAATGGGCTTGCATACATCCATTGGCATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGGCATTACATGTGATATTG
62581781 AAATGGGCTT
1 AAATGGGCTT
62581791 AAGGGCCATA
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
42 49 1.00
ACGTcount: A:0.28, C:0.14, G:0.22, T:0.36
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCCATTGGCATTACATGTGATATTG
Found at i:62581889 original size:31 final size:31
Alignment explanation
Indices: 62581812--62581890 Score: 131
Period size: 31 Copynumber: 2.5 Consensus size: 31
62581802 CGTTTACAGT
*
62581812 AAAGGCTTCGGCCCAATGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
* *
62581843 AAAGGATTTGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
62581874 AAAGGCTTCGGCCCAGT
1 AAAGGCTTCGGCCCAGT
62581891 AACCGTTAAA
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 43 1.00
ACGTcount: A:0.30, C:0.16, G:0.25, T:0.28
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:62595531 original size:44 final size:44
Alignment explanation
Indices: 62595467--62595552 Score: 127
Period size: 44 Copynumber: 2.0 Consensus size: 44
62595457 TGTATGAGGT
** *
62595467 ATCCGAGCTTGTTGATTTGGTCCGAGTTCATTATAGATGCGAGC
1 ATCCGAGCTCATTGAGTTGGTCCGAGTTCATTATAGATGCGAGC
* *
62595511 ATCCGAGCTCATTGAGTTGGTCTGAGTTCATTATGGATGCGA
1 ATCCGAGCTCATTGAGTTGGTCCGAGTTCATTATAGATGCGA
62595553 TATATGTAAT
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
44 37 1.00
ACGTcount: A:0.21, C:0.17, G:0.28, T:0.34
Consensus pattern (44 bp):
ATCCGAGCTCATTGAGTTGGTCCGAGTTCATTATAGATGCGAGC
Found at i:62605551 original size:19 final size:18
Alignment explanation
Indices: 62605508--62605554 Score: 67
Period size: 18 Copynumber: 2.6 Consensus size: 18
62605498 TTATATAACA
*
62605508 AAAAATTTATTTTTCAAT
1 AAAAATTTATTTTTCAAC
*
62605526 AAAAATTTATTTTTGAAC
1 AAAAATTTATTTTTCAAC
62605544 AAAGAATTTAT
1 AAA-AATTTAT
62605555 AAATTTCAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
18 19 0.73
19 7 0.27
ACGTcount: A:0.47, C:0.04, G:0.04, T:0.45
Consensus pattern (18 bp):
AAAAATTTATTTTTCAAC
Found at i:62609518 original size:184 final size:182
Alignment explanation
Indices: 62609211--62609553 Score: 605
Period size: 184 Copynumber: 1.9 Consensus size: 182
62609201 AAAACATATA
* * *
62609211 TAATTGAAGGACCAATTGTGTAATTGGACCCTCCTTAAAGGCCCACGGTAGGAATGATGTGGAAT
1 TAATTGAAGGACCAATTATGTAACTGGACCCTCCTTAAAGGCCAACGGTAGGAATGATGTGGAAT
62609276 TATCTAGATTTTGGTAAATTGCAACTAGGTCCGAATTAATTAAAAATGGACTAAATCATAAAAGT
66 TATCTAGATTTTGGTAAATTGCAACTAGGTCCGAATTAATTAAAAATGGACTAAATCATAAAAGT
62609341 TGAAAAAGATGGTTTCTATTAGTTAAAAAGGTAGATCAATATACCTATATGG
131 TGAAAAAGATGGTTTCTATTAGTTAAAAAGGTAGATCAATATACCTATATGG
* *
62609393 TAATTGAAGGACCAATTATGTAACTGGACCCTCCTTAAGGGGCCAAATGGTAGGAATGATGTGGA
1 TAATTGAAGGACCAATTATGTAACTGGACCCTCCTTAA-AGGCC-AACGGTAGGAATGATGTGGA
*
62609458 ATTATCTAGATTTTGGTAAATTGCAACTAGGTTCGAATTAATTAAAAATGGACTAAATCATAAAA
64 ATTATCTAGATTTTGGTAAATTGCAACTAGGTCCGAATTAATTAAAAATGGACTAAATCATAAAA
*
62609523 TTTGAAAAAGATGGTTTCTATTAGTTAAAAA
129 GTTGAAAAAGATGGTTTCTATTAGTTAAAAA
62609554 TGTAAAGGTA
Statistics
Matches: 152, Mismatches: 7, Indels: 2
0.94 0.04 0.01
Matches are distributed among these distances:
182 36 0.24
183 4 0.03
184 112 0.74
ACGTcount: A:0.38, C:0.11, G:0.20, T:0.31
Consensus pattern (182 bp):
TAATTGAAGGACCAATTATGTAACTGGACCCTCCTTAAAGGCCAACGGTAGGAATGATGTGGAAT
TATCTAGATTTTGGTAAATTGCAACTAGGTCCGAATTAATTAAAAATGGACTAAATCATAAAAGT
TGAAAAAGATGGTTTCTATTAGTTAAAAAGGTAGATCAATATACCTATATGG
Found at i:62611254 original size:11 final size:11
Alignment explanation
Indices: 62611238--62611267 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
62611228 GCAATTTTGT
62611238 AATTAAATCAA
1 AATTAAATCAA
*
62611249 AATTAAAACAA
1 AATTAAATCAA
62611260 AATTAAAT
1 AATTAAAT
62611268 TGAAGAATAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.67, C:0.07, G:0.00, T:0.27
Consensus pattern (11 bp):
AATTAAATCAA
Found at i:62613857 original size:21 final size:21
Alignment explanation
Indices: 62613833--62613877 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
62613823 TACACAGGTG
*
62613833 TGTGGAGTAGCCACACAGACA
1 TGTGGAATAGCCACACAGACA
* *
62613854 TGTGGAATGGCCACACAGCCA
1 TGTGGAATAGCCACACAGACA
62613875 TGT
1 TGT
62613878 TTGAACCATA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.29, C:0.24, G:0.29, T:0.18
Consensus pattern (21 bp):
TGTGGAATAGCCACACAGACA
Found at i:62614196 original size:13 final size:13
Alignment explanation
Indices: 62614178--62614202 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
62614168 ATTGAAGGTG
62614178 GATATGAGTTTTA
1 GATATGAGTTTTA
62614191 GATATGAGTTTT
1 GATATGAGTTTT
62614203 CAAGTGATTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.28, C:0.00, G:0.24, T:0.48
Consensus pattern (13 bp):
GATATGAGTTTTA
Found at i:62616544 original size:49 final size:48
Alignment explanation
Indices: 62616384--62616651 Score: 159
Period size: 49 Copynumber: 5.7 Consensus size: 48
62616374 TTTGTGTGCC
* * * * *
62616384 AGTGTAAGACATTTCTGGGACAT-TCATCGGCCTCGAGTTCT-A-AGAT
1 AGTGTAAGACCTGTCTGGGACATGGCATCGGCCTCGA-TTGTGAGAGCT
* * * * *
62616430 AGTGTAGGACATGTCTGGGACAT-GTATCGG-CTACGA--GATGTG-TC-
1 AGTGTAAGACCTGTCTGGGACATGGCATCGGCCT-CGATTG-TGAGAGCT
* * *
62616474 AGTGTAAGACTATGTCTGGGACATGGCATTGGCAC-GGATATGTGAGAGCT
1 AGTGTAAGAC-CTGTCTGGGACATGGCATCGGC-CTCGAT-TGTGAGAGCT
* * * * *
62616524 AGTGTAAGACCTGTCTGGGACATGGCGTCGGCCTCGATTTTTATAGTT
1 AGTGTAAGACCTGTCTGGGACATGGCATCGGCCTCGATTGTGAGAGCT
* *
62616572 AGTGTAAGACCATGTCTGGGACATGGCATC--CACTTGA-TG-GATGAGCC
1 AGTGTAAGACC-TGTCTGGGACATGGCATCGGC-CTCGATTGTGA-GAGCT
*
62616619 AGTGTAAGACCATGTTTGGGACATGGCATCGGC
1 AGTGTAAGACC-TGTCTGGGACATGGCATCGGC
62616652 ATTATACCCT
Statistics
Matches: 173, Mismatches: 30, Indels: 35
0.73 0.13 0.15
Matches are distributed among these distances:
44 10 0.06
45 15 0.09
46 37 0.21
47 33 0.19
48 26 0.15
49 42 0.24
50 10 0.06
ACGTcount: A:0.24, C:0.18, G:0.31, T:0.28
Consensus pattern (48 bp):
AGTGTAAGACCTGTCTGGGACATGGCATCGGCCTCGATTGTGAGAGCT
Found at i:62616643 original size:145 final size:140
Alignment explanation
Indices: 62616384--62616652 Score: 324
Period size: 145 Copynumber: 1.9 Consensus size: 140
62616374 TTTGTGTGCC
* * *
62616384 AGTGTAAGACATTTCTGGGACATTCATCGGCCTCGAGTTCTAAGATAGTGTAGGACATGTCTGGG
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGTTCTAAGATAGTGTAAGACATGTCTGGG
* ** * * * *
62616449 ACATGTATCGGCTACGAGATGTGTCAGTGTAAGACTATGTCTGGGACATGGCATTGGCACGGATA
66 ACATGCATCCACTACGAGATGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACGGATA
62616514 TGTGAGAGCT
131 TGTGAGAGCT
* * * * *
62616524 AGTGTAAGACCTGTCTGGGACATGGCGTCGGCCTCGATTTTTATAGTTAGTGTAAGACCATGTCT
1 AGTGTAAGACATGTCTGGGACAT-GCATCGGCCTCGAGTTCTA-AGATAGTGTAAGA-CATGTCT
* *
62616589 GGGACATGGCATCCACT-TGATGGATGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCA
63 GGGACAT-GCATCCACTACGA--GATGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCA
62616653 TTATACCCTA
Statistics
Matches: 106, Mismatches: 17, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
140 21 0.20
141 15 0.14
142 11 0.10
143 16 0.15
144 6 0.06
145 37 0.35
ACGTcount: A:0.24, C:0.18, G:0.30, T:0.28
Consensus pattern (140 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGTTCTAAGATAGTGTAAGACATGTCTGGG
ACATGCATCCACTACGAGATGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACGGATA
TGTGAGAGCT
Found at i:62621222 original size:31 final size:31
Alignment explanation
Indices: 62621171--62621230 Score: 84
Period size: 31 Copynumber: 1.9 Consensus size: 31
62621161 TTTAATTTAA
* ** *
62621171 TCAATTTTAGTCTTTTTACTTTTTAAATTGG
1 TCAATTTTAGTCCTCCTACTTTTCAAATTGG
62621202 TCAATTTTAGTCCTCCTACTTTTCAAATT
1 TCAATTTTAGTCCTCCTACTTTTCAAATT
62621231 TTGAAATTTT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 25 1.00
ACGTcount: A:0.23, C:0.17, G:0.07, T:0.53
Consensus pattern (31 bp):
TCAATTTTAGTCCTCCTACTTTTCAAATTGG
Found at i:62623636 original size:23 final size:23
Alignment explanation
Indices: 62623610--62623653 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
62623600 TGAATTTGAA
*
62623610 CAAAAAAATTAGAGCATTTTTCT
1 CAAAAAAATTAGACCATTTTTCT
**
62623633 CAAATGAATTAGACCATTTTT
1 CAAAAAAATTAGACCATTTTT
62623654 AGAAGCCAGG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.41, C:0.14, G:0.09, T:0.36
Consensus pattern (23 bp):
CAAAAAAATTAGACCATTTTTCT
Found at i:62625581 original size:3 final size:3
Alignment explanation
Indices: 62625521--62625569 Score: 50
Period size: 3 Copynumber: 17.0 Consensus size: 3
62625511 CAAATTGAAT
* *
62625521 TAA TAA TGA TAA -AA -AA TAA TAA TTA TAA TAA TAA -AA TAA TAAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T-AA
62625564 TAA TAA
1 TAA TAA
62625570 AATTCAATAA
Statistics
Matches: 39, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
2 6 0.15
3 30 0.77
4 3 0.08
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.31
Consensus pattern (3 bp):
TAA
Found at i:62625584 original size:15 final size:16
Alignment explanation
Indices: 62625545--62625595 Score: 54
Period size: 15 Copynumber: 3.2 Consensus size: 16
62625535 AATAATAATT
62625545 ATAATAATAAAA-T-A
1 ATAATAATAAAATTCA
62625559 ATAAATAATAAAATTCA
1 AT-AATAATAAAATTCA
*
62625576 ATAAT-ATAACATTCCA
1 ATAATAATAAAATT-CA
62625592 ATAA
1 ATAA
62625596 CTCATTACCA
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
14 2 0.06
15 17 0.53
16 10 0.31
17 3 0.09
ACGTcount: A:0.63, C:0.08, G:0.00, T:0.29
Consensus pattern (16 bp):
ATAATAATAAAATTCA
Found at i:62628596 original size:43 final size:43
Alignment explanation
Indices: 62628531--62628614 Score: 132
Period size: 43 Copynumber: 2.0 Consensus size: 43
62628521 AACTTATACA
* *
62628531 AAATCATATAACGATGCTAATGTCCCAGACATGGTCTTACACG
1 AAATCATATAACGATGCCAATGTCCCAGACATGGTCGTACACG
* *
62628574 AAATCATATAATGATGCCAATGTCCCATACATGGTCGTACA
1 AAATCATATAACGATGCCAATGTCCCAGACATGGTCGTACA
62628615 TGTAATCTCA
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 37 1.00
ACGTcount: A:0.36, C:0.23, G:0.15, T:0.26
Consensus pattern (43 bp):
AAATCATATAACGATGCCAATGTCCCAGACATGGTCGTACACG
Found at i:62630567 original size:28 final size:28
Alignment explanation
Indices: 62630534--62630595 Score: 97
Period size: 28 Copynumber: 2.2 Consensus size: 28
62630524 TCAATGTACG
* *
62630534 AAATATTGAGAATGGCACTTAGTGTGCA
1 AAATATTGAGAACGACACTTAGTGTGCA
*
62630562 AGATATTGAGAACGACACTTAGTGTGCA
1 AAATATTGAGAACGACACTTAGTGTGCA
62630590 AAATAT
1 AAATAT
62630596 CGAATAATTC
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.39, C:0.11, G:0.23, T:0.27
Consensus pattern (28 bp):
AAATATTGAGAACGACACTTAGTGTGCA
Found at i:62637995 original size:21 final size:20
Alignment explanation
Indices: 62637958--62638006 Score: 62
Period size: 20 Copynumber: 2.4 Consensus size: 20
62637948 TTTACTCCTT
*
62637958 TTTTTTTCTTTTGTCTTTCG
1 TTTTTTTCTTTTGTCTTTCA
*
62637978 TTTTTTTCTTTTATTCTTTCA
1 TTTTTTTCTTTT-GTCTTTCA
62637999 TTTGTTTT
1 TTT-TTTT
62638007 ATTTATTTTA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
20 12 0.48
21 9 0.36
22 4 0.16
ACGTcount: A:0.04, C:0.12, G:0.06, T:0.78
Consensus pattern (20 bp):
TTTTTTTCTTTTGTCTTTCA
Found at i:62638544 original size:27 final size:27
Alignment explanation
Indices: 62638505--62638578 Score: 112
Period size: 27 Copynumber: 2.7 Consensus size: 27
62638495 TTAATTTAAC
* *
62638505 ATAATTTATATCTAAATAATTGATTAT
1 ATAATTAAAATCTAAATAATTGATTAT
62638532 ATAATTAAAATCTAAATAATTGATTAT
1 ATAATTAAAATCTAAATAATTGATTAT
*
62638559 ATAATTAAAATATAACATAA
1 ATAATTAAAATCTAA-ATAA
62638579 AAATCTTAGA
Statistics
Matches: 43, Mismatches: 3, Indels: 1
0.91 0.06 0.02
Matches are distributed among these distances:
27 39 0.91
28 4 0.09
ACGTcount: A:0.53, C:0.04, G:0.03, T:0.41
Consensus pattern (27 bp):
ATAATTAAAATCTAAATAATTGATTAT
Found at i:62640822 original size:27 final size:27
Alignment explanation
Indices: 62640792--62640860 Score: 102
Period size: 27 Copynumber: 2.6 Consensus size: 27
62640782 AAAATTATTG
*
62640792 TTTTGCCCTTATATGGTAAAATGACTA
1 TTTTGCCCCTATATGGTAAAATGACTA
* * *
62640819 TTTTGCCCGTATGTGGTAAGATGACTA
1 TTTTGCCCCTATATGGTAAAATGACTA
62640846 TTTTGCCCCTATATG
1 TTTTGCCCCTATATG
62640861 AGGTATTTAT
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 37 1.00
ACGTcount: A:0.23, C:0.17, G:0.19, T:0.41
Consensus pattern (27 bp):
TTTTGCCCCTATATGGTAAAATGACTA
Found at i:62650206 original size:85 final size:85
Alignment explanation
Indices: 62650063--62650241 Score: 349
Period size: 85 Copynumber: 2.1 Consensus size: 85
62650053 GGCCGGCCAT
62650063 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
62650128 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
62650148 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
62650213 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
*
62650233 GGGCATGGG
1 GAGCATGGG
62650242 CAATAAAATA
Statistics
Matches: 93, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
85 93 1.00
ACGTcount: A:0.37, C:0.08, G:0.28, T:0.26
Consensus pattern (85 bp):
GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
GTAAGGATTAATAAAATAAA
Found at i:62651585 original size:49 final size:47
Alignment explanation
Indices: 62651506--62652104 Score: 810
Period size: 47 Copynumber: 12.6 Consensus size: 47
62651496 TATTTGAATA
*
62651506 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
62651553 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAAG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
62651602 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
62651649 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATT
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
62651698 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
*
62651747 AATGTGAAAGTGTATATATGTGATAAGACCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
62651794 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
62651843 AATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
62651890 AATGTGAACA-TGTGTATGTGTGATAAGGCTGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
62651937 AATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGGCTAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * * *
62651984 AATGTGAACA-TGCATATATGAGATAAGGTCGAATGGACAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
62652031 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
62652078 GATGTGGAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
62652105 TCCCGAAGGG
Statistics
Matches: 514, Mismatches: 30, Indels: 16
0.92 0.05 0.03
Matches are distributed among these distances:
46 1 0.00
47 330 0.64
49 182 0.35
50 1 0.00
ACGTcount: A:0.34, C:0.08, G:0.29, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
Found at i:62651615 original size:96 final size:94
Alignment explanation
Indices: 62651506--62652104 Score: 812
Period size: 96 Copynumber: 6.3 Consensus size: 94
62651496 TATTTGAATA
62651506 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTG--TATA
* * *
62651571 TATGTGATAAGGCCTAATGGCCGATGTGAAG
64 TATGTGATAAGGCCGAATGGCCAATGTGATG
* *
62651602 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTG--TATA
* * *
62651667 TATGTGATAAGGCCTAATGGCCGATGTGATT
64 TATGTGATAAGGCCGAATGGCCAATGTGATG
*
62651698 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATA
*
62651763 TATGTGATAAGACCGAATGGCCAATGTGATG
64 TATGTGATAAGGCCGAATGGCCAATGTGATG
* *
62651794 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA-TGTGT
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAA-AGTGTAT
*
62651858 ATGTGTGATAAGGCCGAATGGCCAATGTGATG
63 ATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
62651890 AATGTGAACA-TGTGTATGTGTGATAAGG-CTGAATGGCCAATGTGATGAATGTGAACA-TGTGT
1 AATGTGAA-AGTGTATATATGTGATAAGGCCT-AATGGCCAATGTGATGAATGTGAA-AGTGTAT
* *
62651952 ATGTGTGATAAGGCCGAATGGCTAATGTGATG
63 ATATGTGATAAGGCCGAATGGCCAATGTGATG
* * * * *
62651984 AATGTGAACA-TGCATATATGAGATAAGGTCGAATGGACAATGTGATGAATGTGAAAGTGTATAT
1 AATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATAT
62652048 ATGTGATAAGGCCGAATGGCCAATGTGATG
65 ATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
62652078 GATGTGGAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
62652105 TCCCGAAGGG
Statistics
Matches: 463, Mismatches: 32, Indels: 18
0.90 0.06 0.04
Matches are distributed among these distances:
93 3 0.01
94 177 0.38
95 1 0.00
96 234 0.51
97 2 0.00
98 46 0.10
ACGTcount: A:0.34, C:0.08, G:0.29, T:0.29
Consensus pattern (94 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATA
TGTGATAAGGCCGAATGGCCAATGTGATG
Found at i:62654596 original size:38 final size:38
Alignment explanation
Indices: 62654532--62654606 Score: 107
Period size: 38 Copynumber: 2.0 Consensus size: 38
62654522 AATCCGAGTT
*
62654532 TAAAGACCCGCTGACTATATGAAGAGATTATGTCCGGG
1 TAAAGACCCGATGACTATATGAAGAGATTATGTCCGGG
* *
62654570 TAAAGACCCGATGGCTATGT-ACAGAGATTATGTCCGG
1 TAAAGACCCGATGACTATATGA-AGAGATTATGTCCGG
62654607 ATTAAAATTC
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
37 1 0.03
38 32 0.97
ACGTcount: A:0.31, C:0.19, G:0.27, T:0.24
Consensus pattern (38 bp):
TAAAGACCCGATGACTATATGAAGAGATTATGTCCGGG
Found at i:62654722 original size:40 final size:40
Alignment explanation
Indices: 62654660--62655060 Score: 651
Period size: 40 Copynumber: 10.1 Consensus size: 40
62654650 AGGTCTCGAC
62654660 GATG-ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
*
62654699 GATGTATCCGGGCTAAGTTCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
*
62654739 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
* * *
62654779 GATGTATCCGGGTTAAGTTCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
62654819 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
62654859 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
62654899 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
62654939 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
* * ** * *
62654979 GATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCTGGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
* * * * *
62655019 GTTATATCCGGGCTAGGTCCCGAAGAGCAATCATGCTGGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
62655059 GA
1 GA
62655061 CGTGTATTCG
Statistics
Matches: 339, Mismatches: 22, Indels: 1
0.94 0.06 0.00
Matches are distributed among these distances:
39 4 0.01
40 335 0.99
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
Found at i:62656459 original size:85 final size:85
Alignment explanation
Indices: 62656316--62656494 Score: 333
Period size: 85 Copynumber: 2.1 Consensus size: 85
62656306 GGCCGGCCAT
62656316 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
62656381 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
62656401 GAGCATGGGAT-GACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTA
1 GAGCATGGG-TGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTA
62656465 TGTAAGGATTAATAAAATAAA
65 TGTAAGGATTAATAAAATAAA
*
62656486 GGGCATGGG
1 GAGCATGGG
62656495 CAATAAAATA
Statistics
Matches: 92, Mismatches: 1, Indels: 2
0.97 0.01 0.02
Matches are distributed among these distances:
85 91 0.99
86 1 0.01
ACGTcount: A:0.38, C:0.08, G:0.27, T:0.26
Consensus pattern (85 bp):
GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
GTAAGGATTAATAAAATAAA
Found at i:62658040 original size:49 final size:47
Alignment explanation
Indices: 62657762--62658456 Score: 968
Period size: 47 Copynumber: 14.6 Consensus size: 47
62657752 TATTTGAATA
*
62657762 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
62657809 AATGTGAAAGTGTATATATATGTGAT-AGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
62657857 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
62657904 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCAATGTGACG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
62657951 AATGTGAAAGTGTATTTTTTATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTA---TATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
62658001 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
62658050 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
62658099 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
62658146 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
62658195 AATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
62658242 AATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
62658289 AATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
62658336 AATGTGAACA-TGCATATATGAGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
*
62658383 AATGTGAAAATGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
62658430 GATGTGGAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
62658457 TCCCGAAGGG
Statistics
Matches: 613, Mismatches: 23, Indels: 24
0.93 0.03 0.04
Matches are distributed among these distances:
46 13 0.02
47 373 0.61
48 33 0.05
49 150 0.24
50 42 0.07
52 2 0.00
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
Found at i:62658334 original size:22 final size:22
Alignment explanation
Indices: 62658307--62658428 Score: 61
Period size: 22 Copynumber: 5.3 Consensus size: 22
62658297 CATGTGTATG
62658307 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
* * *
62658329 TGTGATGAATG-TGAACAT-GCATATA
1 TGTGAT-AAGGCCG-A-ATGGC-CA-A
*
62658354 TGAGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
** ***
62658376 TGTGATGAATGTG-AAAATGTATATA
1 TGTGAT-AA-G-GCCGAATGGCCA-A
62658401 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
62658423 TGTGAT
1 TGTGAT
62658429 GGATGTGGAA
Statistics
Matches: 70, Mismatches: 18, Indels: 24
0.62 0.16 0.21
Matches are distributed among these distances:
22 21 0.30
23 17 0.24
24 17 0.24
25 15 0.21
ACGTcount: A:0.34, C:0.11, G:0.29, T:0.25
Consensus pattern (22 bp):
TGTGATAAGGCCGAATGGCCAA
Found at i:62662801 original size:42 final size:41
Alignment explanation
Indices: 62662747--62662848 Score: 109
Period size: 42 Copynumber: 2.4 Consensus size: 41
62662737 CGAGACTATG
62662747 TGTAACGACATATCTAGGATATGACATC-ATTATGAGATTTCA
1 TGTAA-GACATATCTAGGATATGACATCGA-TATGAGATTTCA
* * *
62662789 TGTAAGACCATATCT-GACATATGGCATCGATATGAGATTTCG
1 TGTAAGA-CATATCTAG-GATATGACATCGATATGAGATTTCA
*
62662831 TGTAAGATCATAGCTAGG
1 TGTAAGA-CATATCTAGG
62662849 CTATTGGCAT
Statistics
Matches: 50, Mismatches: 6, Indels: 8
0.78 0.09 0.12
Matches are distributed among these distances:
41 3 0.06
42 45 0.90
43 2 0.04
ACGTcount: A:0.33, C:0.15, G:0.21, T:0.31
Consensus pattern (41 bp):
TGTAAGACATATCTAGGATATGACATCGATATGAGATTTCA
Found at i:62678512 original size:47 final size:47
Alignment explanation
Indices: 62678454--62678848 Score: 619
Period size: 47 Copynumber: 8.4 Consensus size: 47
62678444 CAGCCAAGAC
62678454 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
* *
62678501 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAG
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
* *
62678548 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAG
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
*
62678595 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
62678642 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
* * *
62678689 AGTGTATATATGTAATAAGGCCAAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
*
62678736 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
* * * * * * * *
62678783 AGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
* *
62678830 AGTGCATAAATGTGATAAG
1 AGTGTATATATGTGATAAG
62678849 TCCCGAAGGG
Statistics
Matches: 326, Mismatches: 22, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 326 1.00
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
Found at i:62679025 original size:37 final size:37
Alignment explanation
Indices: 62678967--62679045 Score: 106
Period size: 37 Copynumber: 2.1 Consensus size: 37
62678957 CCGAGCTCTA
* *
62678967 AAGACCCGATGACTACATGTGG-GAATTTTGTCCGGGT
1 AAGACCCGATAACTACATGTGGAG-ATTATGTCCGGGT
* *
62679004 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACATGTGGAGATTATGTCCGGGT
62679041 AAGAC
1 AAGAC
62679046 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
37 36 0.97
38 1 0.03
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACATGTGGAGATTATGTCCGGGT
Found at i:62687741 original size:54 final size:54
Alignment explanation
Indices: 62687663--62687770 Score: 207
Period size: 54 Copynumber: 2.0 Consensus size: 54
62687653 GTAATCAAAG
62687663 ATAACAAACGTTTTGATAAGTTAATTTCAAATGTAATAACGGAATGGGTTTAAC
1 ATAACAAACGTTTTGATAAGTTAATTTCAAATGTAATAACGGAATGGGTTTAAC
*
62687717 ATAACAAACGTTTTGATAAGTTAATTTCAGATGTAATAACGGAATGGGTTTAAC
1 ATAACAAACGTTTTGATAAGTTAATTTCAAATGTAATAACGGAATGGGTTTAAC
62687771 TTAAAAAATG
Statistics
Matches: 53, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
54 53 1.00
ACGTcount: A:0.40, C:0.09, G:0.18, T:0.33
Consensus pattern (54 bp):
ATAACAAACGTTTTGATAAGTTAATTTCAAATGTAATAACGGAATGGGTTTAAC
Found at i:62691054 original size:39 final size:40
Alignment explanation
Indices: 62691011--62691178 Score: 148
Period size: 40 Copynumber: 4.2 Consensus size: 40
62691001 CTCGTTCAAG
* * * *
62691011 TGCCTTCGGGACATAGCCCGG-TTATAGTAACTCATAC-AA
1 TGCCTTCGGGACTTAACCCGGATTATA-AAACTCACACGAA
* *
62691050 TGCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACGAA
1 TGCCTTCGGGACTTAACCCGGATTATAAAACTCACACGAA
* * *
62691090 TGCCTTCGGGACTTAACCCGGAATTAGT--ATCTCGCACAAA
1 TGCCTTCGGGACTTAACCCGG-ATTA-TAAAACTCACACGAA
* * * *
62691130 GGCCTTCGGGACTTAACCCGGAATTA-ATAACTCGCACAAA
1 TGCCTTCGGGACTTAACCCGG-ATTATAAAACTCACACGAA
62691170 TGCCTTCGG
1 TGCCTTCGG
62691179 ATCTTAGTCC
Statistics
Matches: 111, Mismatches: 12, Indels: 11
0.83 0.09 0.08
Matches are distributed among these distances:
39 26 0.23
40 81 0.73
41 3 0.03
42 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
TGCCTTCGGGACTTAACCCGGATTATAAAACTCACACGAA
Found at i:62691162 original size:80 final size:80
Alignment explanation
Indices: 62691046--62691231 Score: 229
Period size: 80 Copynumber: 2.3 Consensus size: 80
62691036 AGTAACTCAT
* * *
62691046 ACAATGCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACGAATGCCTTCGGGA-CTTAACCCG
1 ACAAAGCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATGCCTTC-GGATCTTAACCCG
*
62691110 GA-ATTAGT-A-TCTCGC
65 GATA-TAGTCACT-TAGC
**
62691125 ACAAAGGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACAAATGCCTTCGGATCTTAGTCC
1 ACAAA-GCCTTCGGGACTTAACCCGGATATTAA-AACTCGCACAAATGCCTTCGGATCTTAACCC
62691189 GGATATAGTCACTTAGC
64 GGATATAGTCACTTAGC
*
62691206 ACAAAGCCTTCGGGACTTAGCCCGGA
1 ACAAAGCCTTCGGGACTTAACCCGGA
62691232 CAGCATTCAA
Statistics
Matches: 94, Mismatches: 7, Indels: 11
0.84 0.06 0.10
Matches are distributed among these distances:
79 11 0.12
80 72 0.77
81 10 0.11
82 1 0.01
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (80 bp):
ACAAAGCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATGCCTTCGGATCTTAACCCGG
ATATAGTCACTTAGC
Found at i:62691191 original size:40 final size:40
Alignment explanation
Indices: 62691048--62691231 Score: 205
Period size: 40 Copynumber: 4.6 Consensus size: 40
62691038 TAACTCATAC
* *
62691048 AATGCCTTCGGGACTTAACCCGGATTTTAA-AACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACA
* *
62691088 AATGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
*
62691128 AAGGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
** * * *
62691168 AATGCCTTC-GGATCTTAGTCCGG-ATATAGTCACTTAGCACA
1 AATGCCTTCGGGA-CTTAACCCGGAAT-TAATAAC-TCGCACA
*
62691209 AA-GCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
62691232 CAGCATTCAA
Statistics
Matches: 124, Mismatches: 14, Indels: 11
0.83 0.09 0.07
Matches are distributed among these distances:
39 8 0.06
40 105 0.85
41 11 0.09
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
Found at i:62698371 original size:39 final size:40
Alignment explanation
Indices: 62698328--62698495 Score: 148
Period size: 40 Copynumber: 4.2 Consensus size: 40
62698318 CTCGTTCAAG
* * * *
62698328 TGCCTTCGGGACATAGCCCGG-TTATAGTAACTCATAC-AA
1 TGCCTTCGGGACTTAACCCGGATTATA-AAACTCACACGAA
* *
62698367 TGCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACGAA
1 TGCCTTCGGGACTTAACCCGGATTATAAAACTCACACGAA
* * *
62698407 TGCCTTCGGGACTTAACCCGGAATTAGT--ATCTCGCACAAA
1 TGCCTTCGGGACTTAACCCGG-ATTA-TAAAACTCACACGAA
* * * *
62698447 GGCCTTCGGGACTTAACCCGGAATTA-ATAACTCGCACAAA
1 TGCCTTCGGGACTTAACCCGG-ATTATAAAACTCACACGAA
62698487 TGCCTTCGG
1 TGCCTTCGG
62698496 ATCTTAGTCC
Statistics
Matches: 111, Mismatches: 12, Indels: 11
0.83 0.09 0.08
Matches are distributed among these distances:
39 26 0.23
40 81 0.73
41 3 0.03
42 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
TGCCTTCGGGACTTAACCCGGATTATAAAACTCACACGAA
Found at i:62698479 original size:80 final size:80
Alignment explanation
Indices: 62698363--62698548 Score: 229
Period size: 80 Copynumber: 2.3 Consensus size: 80
62698353 AGTAACTCAT
* * *
62698363 ACAATGCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACGAATGCCTTCGGGA-CTTAACCCG
1 ACAAAGCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATGCCTTC-GGATCTTAACCCG
*
62698427 GA-ATTAGT-A-TCTCGC
65 GATA-TAGTCACT-TAGC
**
62698442 ACAAAGGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACAAATGCCTTCGGATCTTAGTCC
1 ACAAA-GCCTTCGGGACTTAACCCGGATATTAA-AACTCGCACAAATGCCTTCGGATCTTAACCC
62698506 GGATATAGTCACTTAGC
64 GGATATAGTCACTTAGC
*
62698523 ACAAAGCCTTCGGGACTTAGCCCGGA
1 ACAAAGCCTTCGGGACTTAACCCGGA
62698549 CAGCATTCAA
Statistics
Matches: 94, Mismatches: 7, Indels: 11
0.84 0.06 0.10
Matches are distributed among these distances:
79 11 0.12
80 72 0.77
81 10 0.11
82 1 0.01
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (80 bp):
ACAAAGCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATGCCTTCGGATCTTAACCCGG
ATATAGTCACTTAGC
Found at i:62698508 original size:40 final size:40
Alignment explanation
Indices: 62698365--62698548 Score: 205
Period size: 40 Copynumber: 4.6 Consensus size: 40
62698355 TAACTCATAC
* *
62698365 AATGCCTTCGGGACTTAACCCGGATTTTAA-AACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACA
* *
62698405 AATGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
*
62698445 AAGGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
** * * *
62698485 AATGCCTTC-GGATCTTAGTCCGG-ATATAGTCACTTAGCACA
1 AATGCCTTCGGGA-CTTAACCCGGAAT-TAATAAC-TCGCACA
*
62698526 AA-GCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
62698549 CAGCATTCAA
Statistics
Matches: 124, Mismatches: 14, Indels: 11
0.83 0.09 0.07
Matches are distributed among these distances:
39 8 0.06
40 105 0.85
41 11 0.09
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
Found at i:62701949 original size:47 final size:47
Alignment explanation
Indices: 62701842--62702108 Score: 426
Period size: 47 Copynumber: 5.6 Consensus size: 47
62701832 GAAATGATAG
* *
62701842 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG--TATATGTGTGA
* * **
62701891 TAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
*
62701938 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
*
62701985 TAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
*
62702032 TAGGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
*
62702079 TAGGGCCTAATAGCCGATGTGATGAATGTG
1 TAAGGCCTAATAGCCGATGTGATGAATGTG
62702109 CCTAATAGCC
Statistics
Matches: 209, Mismatches: 9, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
47 174 0.83
49 35 0.17
ACGTcount: A:0.30, C:0.10, G:0.31, T:0.29
Consensus pattern (47 bp):
TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
Found at i:62702018 original size:94 final size:94
Alignment explanation
Indices: 62701842--62702392 Score: 611
Period size: 94 Copynumber: 5.6 Consensus size: 94
62701832 GAAATGATAG
* * *
62701842 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATGTGTGATAAGGCCTAATAGCCG
*
62701907 ATGTGATGAATGTGAAAGTGTATATACGTGA
64 ATGTGATGAATGTGAAAGTGTATATATGTGA
*
62701938 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGAC
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGAT
*
62702003 GTGATGAATGTGAAAGTGTATATGTGTGA
66 GTGATGAATGTGAAAGTGTATATATGTGA
* * *
62702032 TAGGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAGGGCCTAATAGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGAT
*
62702097 GTGATGAATGTGCCTAATAGCCG-ACGTGATGAATGTGA
66 GTGATGAATGTG---AA-AG-TGTA--T-AT--ATGTGA
** * * * **
62702135 -AAGTGTATATGTGTGATAGGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGAT
1 TAAG-GCCTA------AT--GGCC-GAT-G-TGATG-AATG--TGAA--AGTGTATATGTGTGAT
* *
62702199 AGGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
49 AAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * *
62702245 TAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGTATGTGTGTGATAAGGCCTAATAGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGAT
62702310 GTGATGAATGTGAAAGTGTATATATGTGA
66 GTGATGAATGTGAAAGTGTATATATGTGA
* *
62702339 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAAGGCC
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCC
62702393 GAGTGGCCAA
Statistics
Matches: 386, Mismatches: 40, Indels: 60
0.79 0.08 0.12
Matches are distributed among these distances:
94 233 0.60
96 38 0.10
97 2 0.01
98 6 0.02
99 5 0.01
100 2 0.01
101 3 0.01
102 5 0.01
103 8 0.02
104 2 0.01
109 2 0.01
110 8 0.02
111 6 0.02
112 4 0.01
113 2 0.01
114 5 0.01
115 6 0.02
116 2 0.01
117 2 0.01
119 45 0.12
ACGTcount: A:0.31, C:0.10, G:0.31, T:0.29
Consensus pattern (94 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGAT
GTGATGAATGTGAAAGTGTATATATGTGA
Found at i:62702101 original size:22 final size:24
Alignment explanation
Indices: 62702074--62702131 Score: 66
Period size: 25 Copynumber: 2.4 Consensus size: 24
62702064 AGTGTATATG
62702074 TGTGAT-A-GGGCCTAATAGCCGA
1 TGTGATAATGGGCCTAATAGCCGA
*
62702096 TGTGATGAATGTGCCTAATAGCCGA
1 TGTGAT-AATGGGCCTAATAGCCGA
*
62702121 CGTGATGAATG
1 TGTGAT-AATG
62702132 TGAAAGTGTA
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
22 6 0.19
24 1 0.03
25 24 0.77
ACGTcount: A:0.28, C:0.16, G:0.31, T:0.26
Consensus pattern (24 bp):
TGTGATAATGGGCCTAATAGCCGA
Found at i:62702112 original size:119 final size:119
Alignment explanation
Indices: 62701989--62702227 Score: 478
Period size: 119 Copynumber: 2.0 Consensus size: 119
62701979 GTGTGATAAG
62701989 GCCTAATAGCCGACGTGATGAATGTGAAAGTGTATATGTGTGATAGGGCCTAATAGCCGATGTGA
1 GCCTAATAGCCGACGTGATGAATGTGAAAGTGTATATGTGTGATAGGGCCTAATAGCCGATGTGA
62702054 TGAATGTGAAAGTGTATATGTGTGATAGGGCCTAATAGCCGATGTGATGAATGT
66 TGAATGTGAAAGTGTATATGTGTGATAGGGCCTAATAGCCGATGTGATGAATGT
62702108 GCCTAATAGCCGACGTGATGAATGTGAAAGTGTATATGTGTGATAGGGCCTAATAGCCGATGTGA
1 GCCTAATAGCCGACGTGATGAATGTGAAAGTGTATATGTGTGATAGGGCCTAATAGCCGATGTGA
62702173 TGAATGTGAAAGTGTATATGTGTGATAGGGCCTAATAGCCGATGTGATGAATGT
66 TGAATGTGAAAGTGTATATGTGTGATAGGGCCTAATAGCCGATGTGATGAATGT
62702227 G
1 G
62702228 AAAGTGTATA
Statistics
Matches: 120, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
119 120 1.00
ACGTcount: A:0.29, C:0.11, G:0.31, T:0.28
Consensus pattern (119 bp):
GCCTAATAGCCGACGTGATGAATGTGAAAGTGTATATGTGTGATAGGGCCTAATAGCCGATGTGA
TGAATGTGAAAGTGTATATGTGTGATAGGGCCTAATAGCCGATGTGATGAATGT
Found at i:62702113 original size:25 final size:25
Alignment explanation
Indices: 62702083--62702133 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
62702073 GTGTGATAGG
*
62702083 GCCTAATAGCCGATGTGATGAATGT
1 GCCTAATAGCCGACGTGATGAATGT
62702108 GCCTAATAGCCGACGTGATGAATGT
1 GCCTAATAGCCGACGTGATGAATGT
62702133 G
1 G
62702134 AAAGTGTATA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.25
Consensus pattern (25 bp):
GCCTAATAGCCGACGTGATGAATGT
Found at i:62702137 original size:166 final size:166
Alignment explanation
Indices: 62701942--62702274 Score: 612
Period size: 166 Copynumber: 2.0 Consensus size: 166
62701932 ACGTGATAAG
* *
62701942 GCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGACGTGA
1 GCCTAATAGCCGACGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGACGTGA
62702007 TGAATGTGAAAGTGTATATGTGTGATAGGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATA
66 TGAATGTGAAAGTGTATATGTGTGATAGGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATA
* *
62702072 TGTGTGATAGGGCCTAATAGCCGATGTGATGAATGT
131 TGTGTGATAAGGCCTAATAGCCGACGTGATGAATGT
* *
62702108 GCCTAATAGCCGACGTGATGAATGTGAAAGTGTATATGTGTGATAGGGCCTAATAGCCGATGTGA
1 GCCTAATAGCCGACGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGACGTGA
62702173 TGAATGTGAAAGTGTATATGTGTGATAGGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATA
66 TGAATGTGAAAGTGTATATGTGTGATAGGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATA
62702238 TGTGTGATAAGGCCTAATAGCCGACGTGATGAATGT
131 TGTGTGATAAGGCCTAATAGCCGACGTGATGAATGT
62702274 G
1 G
62702275 AAAGTGTATG
Statistics
Matches: 161, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
166 161 1.00
ACGTcount: A:0.30, C:0.11, G:0.31, T:0.29
Consensus pattern (166 bp):
GCCTAATAGCCGACGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGACGTGA
TGAATGTGAAAGTGTATATGTGTGATAGGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATA
TGTGTGATAAGGCCTAATAGCCGACGTGATGAATGT
Found at i:62702179 original size:72 final size:72
Alignment explanation
Indices: 62702036--62702180 Score: 281
Period size: 72 Copynumber: 2.0 Consensus size: 72
62702026 GTGTGATAGG
*
62702036 GCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAGGGCCTAATAGCCGATGTGA
1 GCCTAATAGCCGACGTGATGAATGTGAAAGTGTATATGTGTGATAGGGCCTAATAGCCGATGTGA
62702101 TGAATGT
66 TGAATGT
62702108 GCCTAATAGCCGACGTGATGAATGTGAAAGTGTATATGTGTGATAGGGCCTAATAGCCGATGTGA
1 GCCTAATAGCCGACGTGATGAATGTGAAAGTGTATATGTGTGATAGGGCCTAATAGCCGATGTGA
62702173 TGAATGT
66 TGAATGT
62702180 G
1 G
62702181 AAAGTGTATA
Statistics
Matches: 72, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
72 72 1.00
ACGTcount: A:0.29, C:0.12, G:0.31, T:0.28
Consensus pattern (72 bp):
GCCTAATAGCCGACGTGATGAATGTGAAAGTGTATATGTGTGATAGGGCCTAATAGCCGATGTGA
TGAATGT
Found at i:62702269 original size:213 final size:213
Alignment explanation
Indices: 62701895--62702321 Score: 746
Period size: 213 Copynumber: 2.0 Consensus size: 213
62701885 ATGTGATAGG
* * *
62701895 GCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGATAAGGCCTAATGGCCGATGTGA
1 GCCTAATAGCCGACGTGATGAATGTGAAAGTGTATATACGTGATAAGGCCTAATAGCCGATGTGA
62701960 TGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGTATA
66 TGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGTATA
* * *
62702025 TGTGTGATAGGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAGGGCCTAAT
131 TGTGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAAT
62702090 AGCCGATGTGATGAATGT
196 AGCCGATGTGATGAATGT
** *
62702108 GCCTAATAGCCGACGTGATGAATGTGAAAGTGTATATGTGTGATAGGGCCTAATAGCCGATGTGA
1 GCCTAATAGCCGACGTGATGAATGTGAAAGTGTATATACGTGATAAGGCCTAATAGCCGATGTGA
* *
62702173 TGAATGTGAAAGTGTATATGTGTGATAGGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATA
66 TGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGTATA
*
62702238 TGTGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGTATGTGTGTGATAAGGCCTAAT
131 TGTGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAAT
62702303 AGCCGATGTGATGAATGT
196 AGCCGATGTGATGAATGT
62702321 G
1 G
62702322 AAAGTGTATA
Statistics
Matches: 202, Mismatches: 12, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
213 202 1.00
ACGTcount: A:0.30, C:0.10, G:0.31, T:0.29
Consensus pattern (213 bp):
GCCTAATAGCCGACGTGATGAATGTGAAAGTGTATATACGTGATAAGGCCTAATAGCCGATGTGA
TGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGTATA
TGTGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAAT
AGCCGATGTGATGAATGT
Found at i:62702309 original size:260 final size:261
Alignment explanation
Indices: 62701846--62702368 Score: 913
Period size: 260 Copynumber: 2.0 Consensus size: 261
62701836 TGATAGTAAG
* * *
62701846 GCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCGATGT
1 GCCTAATAGCCGACGTGATGAATGTGAAAGTG-ATATATATGTGATAGGGCCTAATAGCCGATGT
*
62701911 GATGAATGTGAAAGTGTATATACGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
65 GATGAATGTGAAAGTGTATATACGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTA
*
62701976 TATGTGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGTATATGTGTGATAGGGCCTA
130 TATGTGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTA
* *
62702041 ATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAGGGCCTAATAGCCGATGTGATGAAT
195 ATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAAT
62702106 GT
260 GT
*
62702108 GCCTAATAGCCGACGTGATGAATGTGAAAGTG-TATATGTGTGATAGGGCCTAATAGCCGATGTG
1 GCCTAATAGCCGACGTGATGAATGTGAAAGTGATATATATGTGATAGGGCCTAATAGCCGATGTG
** *
62702172 ATGAATGTGAAAGTGTATATGTGTGATAGGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTAT
66 ATGAATGTGAAAGTGTATATACGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTAT
*
62702237 ATGTGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGTATGTGTGTGATAAGGCCTAA
131 ATGTGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAA
*
62702302 TAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
196 TAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATG
62702367 T
261 T
62702368 G
1 G
62702369 AAAGTGTATA
Statistics
Matches: 248, Mismatches: 13, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
260 218 0.88
262 30 0.12
ACGTcount: A:0.30, C:0.10, G:0.31, T:0.29
Consensus pattern (261 bp):
GCCTAATAGCCGACGTGATGAATGTGAAAGTGATATATATGTGATAGGGCCTAATAGCCGATGTG
ATGAATGTGAAAGTGTATATACGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTAT
ATGTGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAA
TAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATG
T
Found at i:62702415 original size:47 final size:47
Alignment explanation
Indices: 62702108--62702392 Score: 489
Period size: 47 Copynumber: 6.1 Consensus size: 47
62702098 TGATGAATGT
* *
62702108 GCCTAATAGCCGACGTGATGAATGTGAAAGTGTATATGTGTGATAGG
1 GCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAG
*
62702155 GCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAGG
1 GCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAG
62702202 GCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAG
1 GCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAG
* *
62702249 GCCTAATAGCCGACGTGATGAATGTGAAAGTGTATGTGTGTGATAAG
1 GCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAG
*
62702296 GCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
1 GCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAG
* * *
62702343 GCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAAG
1 GCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAG
62702390 GCC
1 GCC
62702393 GAGTGGCCAA
Statistics
Matches: 229, Mismatches: 9, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 229 1.00
ACGTcount: A:0.31, C:0.10, G:0.31, T:0.28
Consensus pattern (47 bp):
GCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAG
Found at i:62702435 original size:141 final size:141
Alignment explanation
Indices: 62702112--62702436 Score: 434
Period size: 141 Copynumber: 2.3 Consensus size: 141
62702102 GAATGTGCCT
* * * ** * *
62702112 AATAGCCGACGTGATGAATGTGAAAGTGTATATGTGTGATAGGGCCTAATAGCCGATGTGATGAA
1 AATAGCCAACGTAATGAATGTGAAAGTGCATAAATGCGATAAGGCCTAATAGCCGATGTGATGAA
* * *
62702177 TGTGAAAGTGTATATGTGTGATAGGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTG
66 TGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATG
* *
62702242 TGATAAGGCCT
131 TGACAAGGCCG
* * * *** *
62702253 AATAGCCGACGTGATGAATGTGAAAGTGTATGTGTGTGATAAGGCCTAATAGCCGATGTGATGAA
1 AATAGCCAACGTAATGAATGTGAAAGTGCATAAATGCGATAAGGCCTAATAGCCGATGTGATGAA
*
62702318 TGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
66 TGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATG
62702383 TGACAAGGCCG
131 TGACAAGGCCG
* * * *
62702394 AGTGGCCAACGTAATGGATGTGGAAGTGCATAAATGCGATAAG
1 AATAGCCAACGTAATGAATGTGAAAGTGCATAAATGCGATAAG
62702437 TCCCGAAAGG
Statistics
Matches: 165, Mismatches: 19, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
141 165 1.00
ACGTcount: A:0.32, C:0.10, G:0.31, T:0.27
Consensus pattern (141 bp):
AATAGCCAACGTAATGAATGTGAAAGTGCATAAATGCGATAAGGCCTAATAGCCGATGTGATGAA
TGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATG
TGACAAGGCCG
Found at i:62702611 original size:37 final size:37
Alignment explanation
Indices: 62702555--62702633 Score: 104
Period size: 37 Copynumber: 2.1 Consensus size: 37
62702545 CCGAGCTCTA
* * * *
62702555 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGAGT
* *
62702592 AAGACCCTATAACTTCGTGTGGAGATTATGTCCGAGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGAGT
62702629 AAGAC
1 AAGAC
62702634 TTCGTAATAA
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.25, C:0.19, G:0.29, T:0.27
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGAGT
Found at i:62709608 original size:20 final size:20
Alignment explanation
Indices: 62709583--62709626 Score: 81
Period size: 20 Copynumber: 2.2 Consensus size: 20
62709573 TATTTATCTA
62709583 CATGTTTAAATGGCTACATT
1 CATGTTTAAATGGCTACATT
62709603 CATGTTTAAATGGCTACATT
1 CATGTTTAAATGGCTACATT
62709623 -ATGT
1 CATGT
62709627 ATTTAATTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
19 4 0.17
20 20 0.83
ACGTcount: A:0.30, C:0.14, G:0.16, T:0.41
Consensus pattern (20 bp):
CATGTTTAAATGGCTACATT
Found at i:62711325 original size:16 final size:16
Alignment explanation
Indices: 62711304--62711335 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
62711294 TAACACATCA
62711304 AAGTCGATGCCATGTC
1 AAGTCGATGCCATGTC
62711320 AAGTCGATGCCATGTC
1 AAGTCGATGCCATGTC
62711336 CCAGACAGGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (16 bp):
AAGTCGATGCCATGTC
Found at i:62711588 original size:94 final size:94
Alignment explanation
Indices: 62711471--62711642 Score: 247
Period size: 94 Copynumber: 1.8 Consensus size: 94
62711461 CAAGTTGACG
* * * * *
62711471 CCATGTCCCAGATAGGTCTTACACTAGCTTGTATATTTTGAGG-CTGATGCATGTCCTAGACATG
1 CCATGTCCCAGACAGGTCTTACACTAGCTGGTATATCTCGAGGTC-GATGCATGTCCTAGACATA
62711535 TCTTACACTAGCTCTCGTCTCAATACCGAT
65 TCTTACACTAGCTCTCGTCTCAATACCGAT
* * *
62711565 CCATGTCCCAGACATGTCTTACACTGGCTGGTATATCTCGATGTCGATGCATGTCCTAGACATAT
1 CCATGTCCCAGACAGGTCTTACACTAGCTGGTATATCTCGAGGTCGATGCATGTCCTAGACATAT
*
62711630 CTTACACTGGCTC
66 CTTACACTAGCTC
62711643 GCAATATGTG
Statistics
Matches: 68, Mismatches: 9, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
94 67 0.99
95 1 0.01
ACGTcount: A:0.23, C:0.27, G:0.19, T:0.32
Consensus pattern (94 bp):
CCATGTCCCAGACAGGTCTTACACTAGCTGGTATATCTCGAGGTCGATGCATGTCCTAGACATAT
CTTACACTAGCTCTCGTCTCAATACCGAT
Found at i:62711633 original size:48 final size:46
Alignment explanation
Indices: 62711472--62711683 Score: 160
Period size: 48 Copynumber: 4.5 Consensus size: 46
62711462 AAGTTGACGC
* * * * * *
62711472 CATGTCCCAGATAGGTCTTACACTAGCTTGTATATTTTGA-GGCTGATG
1 CATGTCCCAGACATGTCTTACACTGGC-TGTA-ATCTCGATGTC-GATG
* * * ** * ** *
62711520 CATGTCCTAGACATGTCTTACACTAGCTCTCGTCTCAATACCGATC
1 CATGTCCCAGACATGTCTTACACTGGCTGTAATCTCGATGTCGATG
62711566 CATGTCCCAGACATGTCTTACACTGGCTGGTATATCTCGATGTCGATG
1 CATGTCCCAGACATGTCTTACACTGGCT-GTA-ATCTCGATGTCGATG
* * * *
62711614 CATGTCCTAGACATATCTTACACTGGCTCGCAATAT-G-TGGTCGATG
1 CATGTCCCAGACATGTCTTACACTGGCT-GTAATCTCGAT-GTCGATG
*
62711660 CATTTCCCAGACATGTCTTACACT
1 CATGTCCCAGACATGTCTTACACT
62711684 AGCACACATA
Statistics
Matches: 131, Mismatches: 29, Indels: 10
0.77 0.17 0.06
Matches are distributed among these distances:
45 1 0.01
46 61 0.47
47 7 0.05
48 62 0.47
ACGTcount: A:0.23, C:0.26, G:0.19, T:0.32
Consensus pattern (46 bp):
CATGTCCCAGACATGTCTTACACTGGCTGTAATCTCGATGTCGATG
Found at i:62714468 original size:18 final size:18
Alignment explanation
Indices: 62714445--62714480 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
62714435 TTCATGGGTG
*
62714445 GTAGTCGATTATCAACTC
1 GTAGTCCATTATCAACTC
*
62714463 GTAGTCCTTTATCAACTC
1 GTAGTCCATTATCAACTC
62714481 CAACCATCTC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.25, C:0.25, G:0.14, T:0.36
Consensus pattern (18 bp):
GTAGTCCATTATCAACTC
Found at i:62719161 original size:49 final size:47
Alignment explanation
Indices: 62719048--62719468 Score: 254
Period size: 49 Copynumber: 8.9 Consensus size: 47
62719038 AGGATAAGAT
* * * * * * * *
62719048 GCCGACGCCATGTCCCAGACATAGTCTTACTCTGGCTAAAACATCAAA
1 GCCGATGCCATGTCCCAGACAT-GTCTTACACTAGCTCATATATCGAG
* * *
62719096 GTCGATGCCATGTCCCAGACAGGTCTTACACTAACTTCCATATATCGAG
1 GCCGATGCCATGTCCCAGACATGTCTTACACTAGC-T-CATATATCGAG
* * *
62719145 GCCGATGCCATGTCCCATACATGTCTTACAGTGGCTCTCATATATCG-G
1 GCCGATGCCATGTCCCAGACATGTCTTACACTAG--CTCATATATCGAG
* * * * * * * *
62719193 TGTCGATGCTATGTCCCAGTCAGGTCTTACACTAACACACA-A-C-AA
1 -GCCGATGCCATGTCCCAGACATGTCTTACACTAGCTCATATATCGAG
* * * ** *
62719238 GCTGACGCCATGTCCCAGACAGGTCTTACACTAGCTTGTAATCTCGAG
1 GCCGATGCCATGTCCCAGACATGTCTTACACTAGCTCAT-ATATCGAG
* * * * *
62719286 GCTGATG-CATGTCCCAGACATGTCTTACACTAGCTC-TCGTCTCAAT
1 GCCGATGCCATGTCCCAGACATGTCTTACACTAGCTCAT-ATATCGAG
* *
62719332 GCCGATG-CATGTCCCAGACATGTCTTACACT-GGTTAGTATATCTTGAG
1 GCCGATGCCATGTCCCAGACATGTCTTACACTAGCTCA-TATATC--GAG
* * *
62719380 GCCGATG-CATGTCCTAGACATGTCTTACACTGGCTC-TCAATAT-GTG
1 GCCGATGCCATGTCCCAGACATGTCTTACACTAGCTCAT--ATATCGAG
* * * * *
62719426 GCCGATG-AATGTCCCAAACATGTCCTACACTAGCACACATATC
1 GCCGATGCCATGTCCCAGACATGTCTTACACTAGCTCATATATC
62719469 ACCCAATGCC
Statistics
Matches: 289, Mismatches: 65, Indels: 40
0.73 0.16 0.10
Matches are distributed among these distances:
44 29 0.10
45 8 0.03
46 72 0.25
47 44 0.15
48 59 0.20
49 75 0.26
50 1 0.00
51 1 0.00
ACGTcount: A:0.26, C:0.29, G:0.19, T:0.27
Consensus pattern (47 bp):
GCCGATGCCATGTCCCAGACATGTCTTACACTAGCTCATATATCGAG
Found at i:62719352 original size:46 final size:46
Alignment explanation
Indices: 62719098--62719459 Score: 232
Period size: 46 Copynumber: 7.7 Consensus size: 46
62719088 ACATCAAAGT
* * *
62719098 CGATGCCATGTCCCAGACAGGTCTTACACTAACT-TCCATATATCGAGGC
1 CGATG-CATGTCCCAGACATGTCTTACACTAGCTCT-C--ATCTCGAGGC
* * * * *
62719147 CGATGCCATGTCCCATACATGTCTTACAGTGGCTCTCATATATCG-GTGT
1 CGATG-CATGTCCCAGACATGTCTTACACTAGCTCTC--ATCTCGAG-GC
* * * * * * *
62719196 CGATGCTATGTCCCAGTCAGGTCTTACACTAACACACA--AC-AAGC
1 CGATGC-ATGTCCCAGACATGTCTTACACTAGCTCTCATCTCGAGGC
* * * * *
62719240 TGACGCCATGTCCCAGACAGGTCTTACACTAGCTTGTAATCTCGAGGC
1 CGATG-CATGTCCCAGACATGTCTTACACTAGC-TCTCATCTCGAGGC
* * * *
62719288 TGATGCATGTCCCAGACATGTCTTACACTAGCTCTCGTCTCAATGC
1 CGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATCTCGAGGC
* * * * *
62719334 CGATGCATGTCCCAGACATGTCTTACACTGGTTAGTATATCTTGAGGC
1 CGATGCATGTCCCAGACATGTCTTACACTAGCT-CT-CATCTCGAGGC
* * * *
62719382 CGATGCATGTCCTAGACATGTCTTACACTGGCTCTCAATAT-GTGGC
1 CGATGCATGTCCCAGACATGTCTTACACTAGCTCTC-ATCTCGAGGC
* * *
62719428 CGATGAATGTCCCAAACATGTCCTACACTAGC
1 CGATGCATGTCCCAGACATGTCTTACACTAGC
62719460 ACACATATCA
Statistics
Matches: 247, Mismatches: 54, Indels: 27
0.75 0.16 0.08
Matches are distributed among these distances:
44 28 0.11
45 3 0.01
46 70 0.28
47 33 0.13
48 46 0.19
49 66 0.27
50 1 0.00
ACGTcount: A:0.25, C:0.28, G:0.20, T:0.27
Consensus pattern (46 bp):
CGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATCTCGAGGC
Found at i:62719430 original size:94 final size:92
Alignment explanation
Indices: 62719098--62719459 Score: 270
Period size: 94 Copynumber: 3.8 Consensus size: 92
62719088 ACATCAAAGT
* * *
62719098 CGATGCCATGTCCCAGACAGGTCTTACACTAACT-TCCATATATCGAGGCCGATGCCATGTCCCA
1 CGATG-CATGTCCCAGACATGTCTTACACTAGCTCT-CATATA---ATGCCGATG-CATGTCCCA
* * * * * *
62719162 TACATGTCTTACAGTGGCTCT-CATATATCG-GTGT
60 GACATGTCTTACACTAGCT-TGTA-ATCTCGAG-GC
* * * * * * * *
62719196 CGATGCTATGTCCCAGTCAGGTCTTACACTAACACACA-ACAA-GCTGACGCCATGTCCCAGACA
1 CGATGC-ATGTCCCAGACATGTCTTACACTAGCTCTCATATAATGCCGATG-CATGTCCCAGACA
*
62719259 GGTCTTACACTAGCTTGTAATCTCGAGGC
64 TGTCTTACACTAGCTTGTAATCTCGAGGC
* * *
62719288 TGATGCATGTCCCAGACATGTCTTACACTAGCTCTCGTCTCAATGCCGATGCATGTCCCAGACAT
1 CGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATAT-AATGCCGATGCATGTCCCAGACAT
* *
62719353 GTCTTACACT-GGTTAGTATATCTTGAGGC
65 GTCTTACACTAGCTT-GTA-ATCTCGAGGC
* * * * *
62719382 CGATGCATGTCCTAGACATGTCTTACACTGGCTCTCA-ATATGTGGCCGATGAATGTCCCAAACA
1 CGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATATA-AT-GCCGATGCATGTCCCAGACA
*
62719446 TGTCCTACACTAGC
64 TGTCTTACACTAGC
62719460 ACACATATCA
Statistics
Matches: 215, Mismatches: 37, Indels: 27
0.77 0.13 0.10
Matches are distributed among these distances:
91 25 0.12
92 16 0.07
93 62 0.29
94 76 0.35
95 1 0.00
97 3 0.01
98 32 0.15
ACGTcount: A:0.25, C:0.28, G:0.20, T:0.27
Consensus pattern (92 bp):
CGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATATAATGCCGATGCATGTCCCAGACATG
TCTTACACTAGCTTGTAATCTCGAGGC
Found at i:62723642 original size:11 final size:13
Alignment explanation
Indices: 62723626--62723658 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
62723616 TTGGTTTTAT
62723626 ATTATAAA-AA-A
1 ATTATAAATAACA
62723637 ATTATAAATAACA
1 ATTATAAATAACA
62723650 ATTATAAAT
1 ATTATAAAT
62723659 TAAATAAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 8 0.40
12 2 0.10
13 10 0.50
ACGTcount: A:0.64, C:0.03, G:0.00, T:0.33
Consensus pattern (13 bp):
ATTATAAATAACA
Found at i:62723654 original size:13 final size:12
Alignment explanation
Indices: 62723626--62723676 Score: 52
Period size: 11 Copynumber: 4.2 Consensus size: 12
62723616 TTGGTTTTAT
62723626 ATTATAAA-AAA
1 ATTATAAATAAA
62723637 ATTATAAATAACA
1 ATTATAAATAA-A
*
62723650 ATTATAAATTAA
1 ATTATAAATAAA
*
62723662 A-TAAAATATAAA
1 ATTATAA-ATAAA
62723674 ATT
1 ATT
62723677 CAGCTCAATC
Statistics
Matches: 33, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
11 12 0.36
12 9 0.27
13 12 0.36
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (12 bp):
ATTATAAATAAA
Found at i:62726160 original size:48 final size:48
Alignment explanation
Indices: 62725919--62726159 Score: 358
Period size: 48 Copynumber: 5.0 Consensus size: 48
62725909 ACATGAATCT
*
62725919 ACATATCATCGCCGATGCCATGTCCCAGACATGGTCTTACATTGGCAC
1 ACATATCATCGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCAC
** * * *
62725967 ACATATCATTACCGATGCCATGCCCCAAACATGGTCTTACACTGGCCC
1 ACATATCATCGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCAC
* *
62726015 ACATATCATCGCCGATGCCATGTCCCAGAAATGGTCTTACACTGGTAC
1 ACATATCATCGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCAC
*
62726063 ACATATCATCCCCGATGCCATGTCCCAGACATGGTCTTACA-TAGGCAC
1 ACATATCATCGCCGATGCCATGTCCCAGACATGGTCTTACACT-GGCAC
* * *
62726111 ATATATCATCGTCGATGCCATGTCCCAGACATGGTCTTACACAGGCAC
1 ACATATCATCGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCAC
62726159 A
1 A
62726160 TTTAGCACTG
Statistics
Matches: 171, Mismatches: 20, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
47 1 0.01
48 170 0.99
ACGTcount: A:0.27, C:0.32, G:0.17, T:0.24
Consensus pattern (48 bp):
ACATATCATCGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCAC
Found at i:62728080 original size:79 final size:80
Alignment explanation
Indices: 62727971--62728158 Score: 231
Period size: 79 Copynumber: 2.4 Consensus size: 80
62727961 TACTCGTTCA
* *
62727971 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
* *
62728034 ATTTAGTAAC-TCGCACC
64 ATATAGTAACTTAGCA-C
**
62728051 AATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGAT
1 AATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGAT
* *
62728115 ATGGTCACTTAGCAC
66 ATAGTAACTTAGCAC
*
62728130 AAAGCCTTCGGGACTTAGCCCGGACATTA
1 AATGCCTTCGGGACTTAGCCCGGA-ATTA
62728159 TTCGAATAAC
Statistics
Matches: 94, Mismatches: 9, Indels: 9
0.84 0.08 0.08
Matches are distributed among these distances:
78 3 0.03
79 59 0.63
80 28 0.30
81 4 0.04
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (80 bp):
AATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGAT
ATAGTAACTTAGCAC
Found at i:62728153 original size:40 final size:40
Alignment explanation
Indices: 62727950--62728153 Score: 238
Period size: 40 Copynumber: 5.1 Consensus size: 40
62727940 CGGAATTTAA
** *
62727950 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
62727990 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
62728030 CCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
62728069 CCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
62728109 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
62728149 CCGGA
1 CCGGA
62728154 CATTATTCGA
Statistics
Matches: 141, Mismatches: 16, Indels: 14
0.82 0.09 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.23
40 94 0.67
41 12 0.09
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:62730125 original size:40 final size:40
Alignment explanation
Indices: 62729887--62730111 Score: 305
Period size: 40 Copynumber: 5.7 Consensus size: 40
62729877 TTGAATGATG
* * * *
62729887 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
62729927 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
62729967 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
62730006 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
62730046 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
62730087 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
62730112 AACGAGGAGC
Statistics
Matches: 167, Mismatches: 13, Indels: 10
0.88 0.07 0.05
Matches are distributed among these distances:
39 35 0.21
40 122 0.73
41 10 0.06
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:62730133 original size:119 final size:119
Alignment explanation
Indices: 62729887--62730144 Score: 292
Period size: 119 Copynumber: 2.2 Consensus size: 119
62729877 TTGAATGATG
* *
62729887 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
* ** *
62729952 GTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
66 GTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAAA
* * * **
62730006 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAT
* * *
62730069 TTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATA
64 TTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTGA-CTAAA
* *
62730126 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
62730145 TACGTGATTT
Statistics
Matches: 118, Mismatches: 16, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
118 3 0.03
119 83 0.70
120 32 0.27
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (119 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAAA
Found at i:62737890 original size:40 final size:40
Alignment explanation
Indices: 62737806--62738031 Score: 289
Period size: 40 Copynumber: 5.7 Consensus size: 40
62737796 TTGAATGATG
* * * *
62737806 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
62737846 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
62737886 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TTACTAAA
* *
62737926 TCCGGGTTAAGTCCCGAAGGCATTTGTGCTAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
62737966 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
62738007 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
62738032 AACGAGGAGC
Statistics
Matches: 165, Mismatches: 15, Indels: 12
0.86 0.08 0.06
Matches are distributed among these distances:
39 19 0.12
40 117 0.71
41 29 0.18
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Done.