Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100714657
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 3970000 characters in sequence are not A, C, G, or T
File 199 of 318
Found at i:62738049 original size:120 final size:119
Alignment explanation
Indices: 62737806--62738064 Score: 294
Period size: 120 Copynumber: 2.2 Consensus size: 119
62737796 TTGAATGATG
* *
62737806 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
* ** *
62737871 GTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTTACTAAA
66 GTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAG-TGACTAAA
* * **
62737926 TCCGGGTTAAGTCCCGAAGGCATTTGTGCT-AGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAT
* * *
62737989 TTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATA
64 TTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTGA-CTAAA
* *
62738046 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
62738065 TACGTGATTT
Statistics
Matches: 119, Mismatches: 15, Indels: 11
0.82 0.10 0.08
Matches are distributed among these distances:
119 18 0.15
120 75 0.63
121 26 0.22
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (119 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAAA
Found at i:62750963 original size:47 final size:48
Alignment explanation
Indices: 62750901--62751133 Score: 295
Period size: 47 Copynumber: 5.0 Consensus size: 48
62750891 TACATAATCT
62750901 ACATATCATCGCCGATGCCATGTCCCAGACATGGTCTTACA-TGGCAC
1 ACATATCATCGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCAC
** * * *
62750948 ACATATCATTACCGATGCCATGCCCCAAACATGGTCTTACACTGGCCC
1 ACATATCATCGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCAC
* *
62750996 ACATATCATCGCCGATGCCATGTCCCAGAAATGGTC-TACACT-GTAC
1 ACATATCATCGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCAC
*
62751042 ACATATCATCCCCGAT-CCATGTCCCAGACAT-GTCTTACA-TAGGCAC
1 ACATATCATCGCCGATGCCATGTCCCAGACATGGTCTTACACT-GGCAC
* * *
62751088 ATATATCA-CGTCGATGCCATGT-CCAGACATGGTC-TACACAGGCAC
1 ACATATCATCGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCAC
62751133 A
1 A
62751134 TTTAGCACTG
Statistics
Matches: 160, Mismatches: 19, Indels: 16
0.82 0.10 0.08
Matches are distributed among these distances:
44 4 0.03
45 41 0.26
46 36 0.22
47 43 0.27
48 36 0.22
ACGTcount: A:0.28, C:0.32, G:0.17, T:0.23
Consensus pattern (48 bp):
ACATATCATCGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCAC
Found at i:62751021 original size:95 final size:93
Alignment explanation
Indices: 62750901--62751126 Score: 293
Period size: 95 Copynumber: 2.5 Consensus size: 93
62750891 TACATAATCT
*
62750901 ACATATCATCGCCGATGCCATGTCCCAGACATGGTCTTACA-TGGCACACATATCATTACCGATG
1 ACATATCATCGCCGATGCCATGTCCCAGACATGGTCTTACACT-GCACACATATCATCACCGAT-
*
62750965 CCATGCCCCAAACATGGTCTTACACT-GGCCC
64 CCATGCCCCAAACAT-GTCTTACA-TAGGCAC
* * *
62750996 ACATATCATCGCCGATGCCATGTCCCAGAAATGGTC-TACACTGTACACATATCATCCCCGATCC
1 ACATATCATCGCCGATGCCATGTCCCAGACATGGTCTTACACTGCACACATATCATCACCGATCC
* *
62751060 ATGTCCCAGACATGTCTTACATAGGCAC
66 ATGCCCCAAACATGTCTTACATAGGCAC
* *
62751088 ATATATCA-CGTCGATGCCATGT-CCAGACATGGTC-TACAC
1 ACATATCATCGCCGATGCCATGTCCCAGACATGGTCTTACAC
62751127 AGGCACATTT
Statistics
Matches: 119, Mismatches: 10, Indels: 9
0.86 0.07 0.07
Matches are distributed among these distances:
90 16 0.13
91 14 0.12
92 19 0.16
93 13 0.11
94 21 0.18
95 36 0.30
ACGTcount: A:0.27, C:0.32, G:0.16, T:0.24
Consensus pattern (93 bp):
ACATATCATCGCCGATGCCATGTCCCAGACATGGTCTTACACTGCACACATATCATCACCGATCC
ATGCCCCAAACATGTCTTACATAGGCAC
Found at i:62752728 original size:40 final size:39
Alignment explanation
Indices: 62752654--62752745 Score: 125
Period size: 40 Copynumber: 2.4 Consensus size: 39
62752644 GCTACTCGTT
*
62752654 CAAATG-CTTCGGGACATAGCCCGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGTTATAGTAACTCGCA
*
62752692 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
1 CAAATGCCTTCGGGACATAACCC-G-TTATAGTAACTCGCA
*
62752732 CCAATGCCTTCGGG
1 CAAATGCCTTCGGG
62752746 CTACCGAATT
Statistics
Matches: 48, Mismatches: 3, Indels: 4
0.87 0.05 0.07
Matches are distributed among these distances:
38 6 0.12
39 14 0.29
40 26 0.54
41 2 0.04
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (39 bp):
CAAATGCCTTCGGGACATAACCCGTTATAGTAACTCGCA
Found at i:62754572 original size:40 final size:40
Alignment explanation
Indices: 62754431--62754649 Score: 251
Period size: 40 Copynumber: 5.7 Consensus size: 40
62754421 TTGAATGATG
* * * *
62754431 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
62754471 TCCGGACTAAGAT-CCGAA-GCATTTGTGC-AGATACT-AA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
62754508 TTCGGGCTAAG--CCGAA-GCA-TTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
62754544 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
62754584 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
62754625 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
62754650 AACGAGGAGC
Statistics
Matches: 158, Mismatches: 12, Indels: 18
0.84 0.06 0.10
Matches are distributed among these distances:
34 6 0.04
35 14 0.09
36 11 0.07
37 10 0.06
38 9 0.06
39 5 0.03
40 100 0.63
41 3 0.02
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:62754667 original size:80 final size:78
Alignment explanation
Indices: 62754519--62754682 Score: 199
Period size: 80 Copynumber: 2.1 Consensus size: 78
62754509 TCGGGCTAAG
* ** *
62754519 CCGAA-GCATTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGACTAA
*
62754583 ATCCGGGTTAAGTC
66 ATCC-GGTTAAATC
*
62754597 CCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGC
1 CCGAAGGCA-TTGTGCGAGTTACTA-AATCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGA-C
* *
62754660 TATATCCGGTTAAATT
63 TAAATCCGGTTAAATC
62754676 CCGAAGG
1 CCGAAGG
62754683 TACGTGATTT
Statistics
Matches: 74, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
78 5 0.07
79 18 0.24
80 49 0.66
81 2 0.03
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (78 bp):
CCGAAGGCATTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGACTAA
ATCCGGTTAAATC
Found at i:62762376 original size:40 final size:40
Alignment explanation
Indices: 62762292--62762516 Score: 296
Period size: 40 Copynumber: 5.7 Consensus size: 40
62762282 TTGAATGATG
* * * *
62762292 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
62762332 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
62762372 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
62762411 TCCGGGTTAAGTCCCGAAGGCATTTGTGCTAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
62762451 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
62762492 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
62762517 AACGAGGAGC
Statistics
Matches: 165, Mismatches: 15, Indels: 10
0.87 0.08 0.05
Matches are distributed among these distances:
39 35 0.21
40 120 0.73
41 10 0.06
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:62762538 original size:119 final size:119
Alignment explanation
Indices: 62762292--62762549 Score: 301
Period size: 119 Copynumber: 2.2 Consensus size: 119
62762282 TTGAATGATG
* *
62762292 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
* ** *
62762357 GTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
66 GTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAAA
* * **
62762411 TCCGGGTTAAGTCCCGAAGGCATTTGTGCT-AGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAT
* * *
62762474 TTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATA
64 TTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTGA-CTAAA
* *
62762531 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
62762550 TACGTGATTT
Statistics
Matches: 119, Mismatches: 15, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
118 3 0.03
119 83 0.70
120 33 0.28
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (119 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAAA
Found at i:62765963 original size:18 final size:20
Alignment explanation
Indices: 62765927--62765973 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
62765917 AGTTGTAAGT
62765927 ATATATATGTGAATAATTTG
1 ATATATATGTGAATAATTTG
* *
62765947 ATAT-TATGTGATTATTTTG
1 ATATATATGTGAATAATTTG
62765966 ATGATATA
1 AT-ATATA
62765974 ACCTATTCTT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
19 15 0.65
20 6 0.26
21 2 0.09
ACGTcount: A:0.36, C:0.00, G:0.15, T:0.49
Consensus pattern (20 bp):
ATATATATGTGAATAATTTG
Found at i:62766585 original size:101 final size:101
Alignment explanation
Indices: 62766480--62766663 Score: 332
Period size: 101 Copynumber: 1.8 Consensus size: 101
62766470 TAAGTCATGC
*
62766480 GTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCACTTGTGTAGTACTAAGTG
1 GTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCACATGTGTAGTACTAAGTG
*
62766545 CAGGCTACTATGCGTACCCGTTAACTTTGATCACAT
66 CAGGCTACTATGCATACCCGTTAACTTTGATCACAT
* *
62766581 GTGTAGTACTAAGTGTAGGCTATTACGTGTACCAGATTGATAGGTCACATGTGTAGTACTAAGTG
1 GTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCACATGTGTAGTACTAAGTG
62766646 CAGGCTACTATGCATACC
66 CAGGCTACTATGCATACC
62766664 AGAGAGCTTC
Statistics
Matches: 79, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
101 79 1.00
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.30
Consensus pattern (101 bp):
GTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCACATGTGTAGTACTAAGTG
CAGGCTACTATGCATACCCGTTAACTTTGATCACAT
Found at i:62766666 original size:50 final size:50
Alignment explanation
Indices: 62766322--62766655 Score: 348
Period size: 50 Copynumber: 6.6 Consensus size: 50
62766312 TTCGTTGTGA
*
62766322 GTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAG
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAG
* * * * * *
62766372 GTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTG-TTAACTTCG
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGA--TAG
* * * * ** * * * * *
62766423 ATCACGTATGAAGTACTAAGTTTAGGCTACAACGTGTATCAGATGGTTAA
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAG
***
62766473 GTCATGCGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAG
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAG
* * * * * *
62766523 GTCACTTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCG-TTAACTTTG
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGA--TAG
* * *
62766574 ATCACATGTGTAGTACTAAGTGTAGGCTATTACGTGTACCAGATTGATAG
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAG
62766624 GTCACATGTGTAGTACTAAGTGCAGGCTACTA
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTA
62766656 TGCATACCAG
Statistics
Matches: 222, Mismatches: 56, Indels: 12
0.77 0.19 0.04
Matches are distributed among these distances:
49 6 0.03
50 143 0.64
51 69 0.31
52 4 0.02
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.30
Consensus pattern (50 bp):
GTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAG
Found at i:62766666 original size:151 final size:151
Alignment explanation
Indices: 62766321--62766655 Score: 517
Period size: 151 Copynumber: 2.2 Consensus size: 151
62766311 ATTCGTTGTG
*
62766321 AGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGT
1 AGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCACATGTGTAGT
* * *
62766386 ACTAAGTGCAGGCTACTATGCGTACCTGTTAACTTCGATCACGTATGAAGTACTAAGTTTAGGCT
66 ACTAAGTGCAGGCTACTATGCGTACCCGTTAACTTCGATCACATATGAAGTACTAAGTGTAGGCT
* *
62766451 ACAACGTGTATCAGATGGTTA
131 ACAACGTGTACCAGATGGATA
* * *
62766472 AGTCATGCGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCACTTGTGTAGT
1 AGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCACATGTGTAGT
* * *
62766537 ACTAAGTGCAGGCTACTATGCGTACCCGTTAACTTTGATCACATGTGTAGTACTAAGTGTAGGCT
66 ACTAAGTGCAGGCTACTATGCGTACCCGTTAACTTCGATCACATATGAAGTACTAAGTGTAGGCT
** *
62766602 ATTACGTGTACCAGATTGATA
131 ACAACGTGTACCAGATGGATA
* *
62766623 GGTCACATGTGTAGTACTAAGTGCAGGCTACTA
1 AGTCACGTGTGTAGTACTAAGTGCAGGCTACTA
62766656 TGCATACCAG
Statistics
Matches: 165, Mismatches: 19, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
151 165 1.00
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.30
Consensus pattern (151 bp):
AGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCACATGTGTAGT
ACTAAGTGCAGGCTACTATGCGTACCCGTTAACTTCGATCACATATGAAGTACTAAGTGTAGGCT
ACAACGTGTACCAGATGGATA
Found at i:62772329 original size:18 final size:20
Alignment explanation
Indices: 62772293--62772338 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
62772283 AGCTGTAAGT
62772293 ATATATATGTGAATAATTTG
1 ATATATATGTGAATAATTTG
* *
62772313 ATAT-TATGTGATTATTTTG
1 ATATATATGTGAATAATTTG
62772332 AT-TATAT
1 ATATATAT
62772339 AACCTATTCT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
18 1 0.04
19 18 0.78
20 4 0.17
ACGTcount: A:0.35, C:0.00, G:0.13, T:0.52
Consensus pattern (20 bp):
ATATATATGTGAATAATTTG
Found at i:62772866 original size:101 final size:101
Alignment explanation
Indices: 62772688--62773586 Score: 573
Period size: 101 Copynumber: 8.9 Consensus size: 101
62772678 TTCATTGTGA
** * * *
62772688 ATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTA
1 ATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATTAGATTGTTAAGTCACATGTGTAGTA
* * *
62772753 CTTAGTGCAGGCTACTATGCGTACCCG-TTAACATCG
66 CTAAGTGCAGGCTACTACGCGTACCAGATTAA-ATCG
* * * *
62772789 ATCACGTGTGTAGTACTAAGTGTAGGCTATTACGTGTATTAGATGGTTAAGTCACGTGTGTAGTA
1 ATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATTAGATTGTTAAGTCACATGTGTAGTA
* * * * * * *
62772854 CTAACTGTAGGCTACTACGTGTGCTAGATT-GATAG
66 CTAAGTGCAGGCTACTACGCGTACCAGATTAAATCG
* * * ** * * *
62772889 ATCGCATGTGTAGTACTAAGTGCCGGCTACTATGCGTACCCATTA-AAT-TCAA-TCACGTGTGT
1 ATCACGTGTGTAGTACTAAGTGCAGGCTACTA--CGT--GTATTAGATTGTTAAGTCACATGTGT
* * *
62772951 AGTACTAAGTGCAGGCTACTACGTGTACCAGATT-GATAG
62 AGTACTAAGTGCAGGCTACTACGCGTACCAGATTAAATCG
* * * * * * **
62772990 GTCGCATGTGTAGTACTTAGTGCAGGCTACTATC-CGTACCCGTTA-A-CGTCGA-TCACATGTG
1 ATCACGTGTGTAGTACTAAGTGCAGGCTACTA-CGTGTA----TTAGATTGTTAAGTCACATGTG
* * * * * *
62773051 TAGTGCTAAGTGTAGGCTATTACGTGTATCAGATGGTTAA--G
61 TAGTACTAAGTGCAGGCTACTACGCGTACCAGAT--TAAATCG
* * * * **
62773092 -TCACGTGTGTAGTACTAACTGCAGGCTACTACGTGTACTAGATTGATAGGTTGCATGTGTAGTA
1 ATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATTAGATTGTTAAGTCACATGTGTAGTA
* *
62773156 CTAAGTGCAGGCTACTATGCGTACC-CATTAAATTCG
66 CTAAGTGCAGGCTACTACGCGTACCAGATTAAA-TCG
** * * *
62773192 ATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTA
1 ATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATTAGATTGTTAAGTCACATGTGTAGTA
* * * *
62773257 CTAAGTGCAGGCTACTATGCGTACCCG-CTAACTTCG
66 CTAAGTGCAGGCTACTACGCGTACCAGATTAA-ATCG
* * * *
62773293 ATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAAATGGTTAAGTCACGTGTGTAGTA
1 ATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATTAGATTGTTAAGTCACATGTGTAGTA
* * * * *
62773358 CTAAGTGCAGGCTGCTACGTGTTCCAGATT-GATAG
66 CTAAGTGCAGGCTACTACGCGTACCAGATTAAATCG
* * * * * * * * * * *
62773393 GTCGCATGTGTAGTACTAAGTCCAAGCTACTATGCGTACCCGTTA-ACT-TCAA-CCACTTGTGT
1 ATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTA----TTAGATTGTTAAGTCACATGTGT
* * * * * *
62773455 AATACTAAGTGCAGGCGACTACGTGTATCATATGGTTAA--G
62 AGTACTAAGTGCAGGCTACTACGCGTACCAGAT--TAAATCG
* * ** * ** * * *
62773495 -TCACATGTGTAGTGCTAAGTGTGGGCTACTACATGTACCAGATTGATAGGTCGCATGTGTAGTA
1 ATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATTAGATTGTTAAGTCACATGTGTAGTA
* *
62773559 CTAAGTGCAGGCTACTATGTGTACCAGA
66 CTAAGTGCAGGCTACTACGCGTACCAGA
62773587 GACCTTCAGT
Statistics
Matches: 630, Mismatches: 134, Indels: 69
0.76 0.16 0.08
Matches are distributed among these distances:
97 7 0.01
98 3 0.00
99 4 0.01
100 131 0.21
101 459 0.73
102 14 0.02
103 4 0.01
104 8 0.01
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (101 bp):
ATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATTAGATTGTTAAGTCACATGTGTAGTA
CTAAGTGCAGGCTACTACGCGTACCAGATTAAATCG
Found at i:62772967 original size:151 final size:151
Alignment explanation
Indices: 62772689--62773370 Score: 504
Period size: 151 Copynumber: 4.5 Consensus size: 151
62772679 TCATTGTGAA
* *
62772689 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTAC
1 TCACGTGTGTAGTACTAACTGCAGGCTACTACGTGTACCAGATTGATAGATCGCATGTGTAGTAC
* * * * *
62772754 TTAGTGCAGGCTACTATGCGTACCCGTTAACATCGATCACGTGTGTAGTACTAAGTGTAGGCTAT
66 TAAGTGCAGGCTACTATGCGTACCCATTAACATCAATCACGTGTGTAGTACTAAGTGCAGGCTAC
62772819 TACGTGTATTAGATGGTTAAG
131 TACGTGTATTAGATGGTTAAG
* * *
62772840 TCACGTGTGTAGTACTAACTGTAGGCTACTACGTGTGCTAGATTGATAGATCGCATGTGTAGTAC
1 TCACGTGTGTAGTACTAACTGCAGGCTACTACGTGTACCAGATTGATAGATCGCATGTGTAGTAC
*
62772905 TAAGTGCCGGCTACTATGCGTACCCATTAA-ATTCAATCACGTGTGTAGTACTAAGTGCAGGCTA
66 TAAGTGCAGGCTACTATGCGTACCCATTAACA-TCAATCACGTGTGTAGTACTAAGTGCAGGCTA
** * * *
62772969 CTACGTGTACCAGATTGATAGG
130 CTACGTGTATTAGATGGTTAAG
* * * * * * * * *
62772991 TCGCATGTGTAGTACTTAGTGCAGGCTACTATC-CGTACCCG-TTAACGTCGATCACATGTGTAG
1 TCACGTGTGTAGTACTAACTGCAGGCTACTA-CGTGTACCAGATTGA--TAGATCGCATGTGTAG
* * * * * * * *** * *
62773054 TGCTAAGTGTAGGCTATTACGTGTA-TCA-GATGGTTAAGTCACGTGTGTAGTACTAACTGCAGG
63 TACTAAGTGCAGGCTACTATGCGTACCCATTAACATCAA-TCACGTGTGTAGTACTAAGTGCAGG
* * * *
62773117 CTACTACGTGTACTAGATTGATAGG
127 CTACTACGTGTATTAGATGGTTAAG
** * * * * * * * * *
62773142 TTGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACC-CATTAAATTCGATCACGTGTGTAGT
1 TCACGTGTGTAGTACTAACTGCAGGCTACTACGTGTACCAGATT-GA-TAGATCGCATGTGTAGT
* * * * * * *
62773206 ACTAAGTGCAGGCTACTACGTGTACCAGATT--GAT-AGGTCGCATGTGTAGTACTAAGTGCAGG
64 ACTAAGTGCAGGCTACTATGCGTACC-CATTAACATCA-ATCACGTGTGTAGTACTAAGTGCAGG
* * *** * ** *
62773268 CTACTATGCGTACCCGCTAACTT-CG
127 CTACTACGTGTATTAGAT-GGTTAAG
* * * * * * *
62773293 ATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAAATGGTTA-AGTCACGTGTGTAGT
1 -TCACGTGTGTAGTACTAACTGCAGGCTACTACGTGTACCAGATTGATAGA-TCGCATGTGTAGT
62773357 ACTAAGTGCAGGCT
64 ACTAAGTGCAGGCT
62773371 GCTACGTGTT
Statistics
Matches: 436, Mismatches: 78, Indels: 34
0.80 0.14 0.06
Matches are distributed among these distances:
150 9 0.02
151 352 0.81
152 72 0.17
153 3 0.01
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.30
Consensus pattern (151 bp):
TCACGTGTGTAGTACTAACTGCAGGCTACTACGTGTACCAGATTGATAGATCGCATGTGTAGTAC
TAAGTGCAGGCTACTATGCGTACCCATTAACATCAATCACGTGTGTAGTACTAAGTGCAGGCTAC
TACGTGTATTAGATGGTTAAG
Found at i:62773135 original size:252 final size:252
Alignment explanation
Indices: 62772687--62773481 Score: 1322
Period size: 252 Copynumber: 3.2 Consensus size: 252
62772677 ATTCATTGTG
62772687 AATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGT
1 AATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGT
62772752 ACTTAGTGCAGGCTACTATGCGTACCCGTTAACATCGATCACGTGTGTAGTACTAAGTGTAGGCT
66 ACTTAGTGCAGGCTACTATGCGTACCCGTTAACATCGATCACGTGTGTAGTACTAAGTGTAGGCT
* * *
62772817 ATTACGTGTATTAGATGGTTAAGTCACGTGTGTAGTACTAACTGTAGGCTACTACGTGTGCTAGA
131 ATTACGTGTATCAGATGGTTAAGTCACGTGTGTAGTACTAACTGCAGGCTACTACGTGTACTAGA
*
62772882 TTGATAGATCGCATGTGTAGTACTAAGTGCCGGCTACTATGCGTACCCATTAAATTC
196 TTGATAGGTCGCATGTGTAGTACTAAGTGCCGGCTACTATGCGTACCCATTAAATTC
62772939 AATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGT
1 AATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGT
* * * *
62773004 ACTTAGTGCAGGCTACTATCCGTACCCGTTAACGTCGATCACATGTGTAGTGCTAAGTGTAGGCT
66 ACTTAGTGCAGGCTACTATGCGTACCCGTTAACATCGATCACGTGTGTAGTACTAAGTGTAGGCT
62773069 ATTACGTGTATCAGATGGTTAAGTCACGTGTGTAGTACTAACTGCAGGCTACTACGTGTACTAGA
131 ATTACGTGTATCAGATGGTTAAGTCACGTGTGTAGTACTAACTGCAGGCTACTACGTGTACTAGA
* *
62773134 TTGATAGGTTGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCATTAAATTC
196 TTGATAGGTCGCATGTGTAGTACTAAGTGCCGGCTACTATGCGTACCCATTAAATTC
*
62773191 GATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGT
1 AATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGT
* * * *
62773256 ACTAAGTGCAGGCTACTATGCGTACCCGCTAACTTCGATCACGTGTGTAGTACTAAGTGCAGGCT
66 ACTTAGTGCAGGCTACTATGCGTACCCGTTAACATCGATCACGTGTGTAGTACTAAGTGTAGGCT
* * * * * *
62773321 ACTACGTGTATCAAATGGTTAAGTCACGTGTGTAGTACTAAGTGCAGGCTGCTACGTGTTCCAGA
131 ATTACGTGTATCAGATGGTTAAGTCACGTGTGTAGTACTAACTGCAGGCTACTACGTGTACTAGA
* * *
62773386 TTGATAGGTCGCATGTGTAGTACTAAGT-CCAAGCTACTATGCGTACCCGTTAACTTC
196 TTGATAGGTCGCATGTGTAGTACTAAGTGCC-GGCTACTATGCGTACCCATTAAATTC
* * * *
62773443 AACCACTTGTGTAATACTAAGTGCAGGCGACTACGTGTA
1 AATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTA
62773482 TCATATGGTT
Statistics
Matches: 508, Mismatches: 34, Indels: 2
0.93 0.06 0.00
Matches are distributed among these distances:
251 1 0.00
252 507 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (252 bp):
AATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGT
ACTTAGTGCAGGCTACTATGCGTACCCGTTAACATCGATCACGTGTGTAGTACTAAGTGTAGGCT
ATTACGTGTATCAGATGGTTAAGTCACGTGTGTAGTACTAACTGCAGGCTACTACGTGTACTAGA
TTGATAGGTCGCATGTGTAGTACTAAGTGCCGGCTACTATGCGTACCCATTAAATTC
Found at i:62773376 original size:151 final size:151
Alignment explanation
Indices: 62773193--62773583 Score: 629
Period size: 151 Copynumber: 2.6 Consensus size: 151
62773183 TTAAATTCGA
62773193 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTAC
* * * *
62773258 TAAGTGCAGGCTACTATGCGTACCCGCTAACTTCGATCACGTGTGTAGTACTAAGTGCAGGCTAC
66 TAAGTGCAGGCTACTATGCGTACCCGCTAACTTCAACCACGTGTGTAATACTAAGTGCAGGCGAC
62773323 TACGTGTATCAAATGGTTAAG
131 TACGTGTATCAAATGGTTAAG
* *
62773344 TCACGTGTGTAGTACTAAGTGCAGGCTGCTACGTGTTCCAGATTGATAGGTCGCATGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTAC
* * * *
62773409 TAAGTCCAAGCTACTATGCGTACCCGTTAACTTCAACCACTTGTGTAATACTAAGTGCAGGCGAC
66 TAAGTGCAGGCTACTATGCGTACCCGCTAACTTCAACCACGTGTGTAATACTAAGTGCAGGCGAC
*
62773474 TACGTGTATCATATGGTTAAG
131 TACGTGTATCAAATGGTTAAG
* * ** *
62773495 TCACATGTGTAGTGCTAAGTGTGGGCTACTACATGTACCAGATTGATAGGTCGCATGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTAC
*
62773560 TAAGTGCAGGCTACTATGTGTACC
66 TAAGTGCAGGCTACTATGCGTACC
62773584 AGAGACCTTC
Statistics
Matches: 219, Mismatches: 21, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
151 219 1.00
ACGTcount: A:0.26, C:0.20, G:0.25, T:0.29
Consensus pattern (151 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTAC
TAAGTGCAGGCTACTATGCGTACCCGCTAACTTCAACCACGTGTGTAATACTAAGTGCAGGCGAC
TACGTGTATCAAATGGTTAAG
Found at i:62784960 original size:166 final size:166
Alignment explanation
Indices: 62784677--62784989 Score: 455
Period size: 166 Copynumber: 1.9 Consensus size: 166
62784667 TTGGGAAACG
** * *
62784677 TTGCACACAAGGTGTCAAATATGTAGCCATTGCTACCTCTATCTCATAACACATATATGCTCGCT
1 TTGCACACAAGGTACCAAATATATAGCCATTGCTACCTCTATCTCATAACACATATATGCTCACT
* * * * *
62784742 CTCAAGCCATCAACAGGCCTACTCACATAAGCTGCCAGTGAAGACGTAGCTACACGGTGCTATTC
66 CTCAAGCCATCAACAGGCCTACTCACACAAGCTACCAGTCAAGACATAGCTACACGGTGCTACTC
*
62784807 ACATAAGCTGTCAAGTAACTGCAACATATGTAGCCA
131 ACACAAGCTGTCAAGTAACTGCAACATATGTAGCCA
*
62784843 TTGCACACAAGGTACCACATATATAGCCATTGCTACCTCTATCTCATAACACATATATGCTCACT
1 TTGCACACAAGGTACCAAATATATAGCCATTGCTACCTCTATCTCATAACACATATATGCTCACT
* * * * * * * *
62784908 CTCGAGCCATTAACAGGCCTGCTCACACAAGCTATCAGTCACGACATAGCTACTCGGTGTTGCTC
66 CTCAAGCCATCAACAGGCCTACTCACACAAGCTACCAGTCAAGACATAGCTACACGGTGCTACTC
62784973 ACACAAGCTGTCAAGTA
131 ACACAAGCTGTCAAGTA
62784990 CCACAACATA
Statistics
Matches: 128, Mismatches: 19, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
166 128 1.00
ACGTcount: A:0.31, C:0.28, G:0.16, T:0.25
Consensus pattern (166 bp):
TTGCACACAAGGTACCAAATATATAGCCATTGCTACCTCTATCTCATAACACATATATGCTCACT
CTCAAGCCATCAACAGGCCTACTCACACAAGCTACCAGTCAAGACATAGCTACACGGTGCTACTC
ACACAAGCTGTCAAGTAACTGCAACATATGTAGCCA
Found at i:62786551 original size:24 final size:23
Alignment explanation
Indices: 62786523--62786578 Score: 69
Period size: 24 Copynumber: 2.4 Consensus size: 23
62786513 ATGTGATTTT
*
62786523 ATTTTATTTTA-TTTTTTTTGTTC
1 ATTTT-TTTTACTTCTTTTTGTTC
*
62786546 AATTTTTTTAACTTCTTTTTGTTC
1 -ATTTTTTTTACTTCTTTTTGTTC
62786570 ATTTTTTTT
1 ATTTTTTTT
62786579 TGCAGAATAA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
23 12 0.43
24 16 0.57
ACGTcount: A:0.14, C:0.07, G:0.04, T:0.75
Consensus pattern (23 bp):
ATTTTTTTTACTTCTTTTTGTTC
Found at i:62790308 original size:43 final size:43
Alignment explanation
Indices: 62790225--62790309 Score: 104
Period size: 43 Copynumber: 2.0 Consensus size: 43
62790215 ATGTGATTCT
* *
62790225 AATATGTGTTTACGAGTAAGACCCTGTCTGGGACAGTGGCATC
1 AATATGTGGTTACGAGTAAGACCCTGTCTAGGACAGTGGCATC
62790268 AATATGTGGTTAC-ATGTAAGACCAC-GTCTAGGAC-GTTGGCAT
1 AATATGTGGTTACGA-GTAAGACC-CTGTCTAGGACAG-TGGCAT
62790310 TGTACGATTT
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
42 2 0.05
43 34 0.92
44 1 0.03
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.28
Consensus pattern (43 bp):
AATATGTGGTTACGAGTAAGACCCTGTCTAGGACAGTGGCATC
Found at i:62792936 original size:31 final size:31
Alignment explanation
Indices: 62792898--62792961 Score: 128
Period size: 31 Copynumber: 2.1 Consensus size: 31
62792888 TCTTTTAGAC
62792898 TTAGTTTCGTAAGAAATATATCAGTCAGAGA
1 TTAGTTTCGTAAGAAATATATCAGTCAGAGA
62792929 TTAGTTTCGTAAGAAATATATCAGTCAGAGA
1 TTAGTTTCGTAAGAAATATATCAGTCAGAGA
62792960 TT
1 TT
62792962 TATGGACCAG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.38, C:0.09, G:0.19, T:0.34
Consensus pattern (31 bp):
TTAGTTTCGTAAGAAATATATCAGTCAGAGA
Found at i:62812006 original size:24 final size:26
Alignment explanation
Indices: 62811979--62812046 Score: 82
Period size: 30 Copynumber: 2.4 Consensus size: 26
62811969 TACAACTTTG
62811979 ATTTGGTTTAATTATATGTTTAAAATTTT
1 ATTTGGTTTAATTATATGTTTAAAA---T
62812008 GATTTGGTTTAATTATATGTTTAAAAT
1 -ATTTGGTTTAATTATATGTTTAAAAT
*
62812035 TTTGTGGTTTAA
1 ATT-TGGTTTAA
62812047 ATGTATATAT
Statistics
Matches: 36, Mismatches: 1, Indels: 5
0.86 0.02 0.12
Matches are distributed among these distances:
26 2 0.06
27 9 0.25
30 25 0.69
ACGTcount: A:0.29, C:0.00, G:0.15, T:0.56
Consensus pattern (26 bp):
ATTTGGTTTAATTATATGTTTAAAAT
Found at i:62812011 original size:30 final size:30
Alignment explanation
Indices: 62811975--62812038 Score: 128
Period size: 30 Copynumber: 2.1 Consensus size: 30
62811965 TCATTACAAC
62811975 TTTGATTTGGTTTAATTATATGTTTAAAAT
1 TTTGATTTGGTTTAATTATATGTTTAAAAT
62812005 TTTGATTTGGTTTAATTATATGTTTAAAAT
1 TTTGATTTGGTTTAATTATATGTTTAAAAT
62812035 TTTG
1 TTTG
62812039 TGGTTTAAAT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 34 1.00
ACGTcount: A:0.28, C:0.00, G:0.14, T:0.58
Consensus pattern (30 bp):
TTTGATTTGGTTTAATTATATGTTTAAAAT
Found at i:62814108 original size:12 final size:12
Alignment explanation
Indices: 62814091--62814139 Score: 55
Period size: 12 Copynumber: 4.1 Consensus size: 12
62814081 CATCATGAAA
62814091 TATGTTATTCAT
1 TATGTTATTCAT
62814103 TATGTTATTCA-
1 TATGTTATTCAT
** *
62814114 TAGTGGGATCCAT
1 TA-TGTTATTCAT
62814127 TATGTTATTCAT
1 TATGTTATTCAT
62814139 T
1 T
62814140 CAGGCAATGC
Statistics
Matches: 29, Mismatches: 6, Indels: 4
0.74 0.15 0.10
Matches are distributed among these distances:
11 2 0.07
12 25 0.86
13 2 0.07
ACGTcount: A:0.24, C:0.10, G:0.14, T:0.51
Consensus pattern (12 bp):
TATGTTATTCAT
Found at i:62818336 original size:3 final size:3
Alignment explanation
Indices: 62818328--62818363 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
62818318 ATGAAGAAAG
62818328 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
62818364 GAATATTGTA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:62830399 original size:13 final size:13
Alignment explanation
Indices: 62830379--62830418 Score: 55
Period size: 13 Copynumber: 3.2 Consensus size: 13
62830369 CTTATAGAAC
*
62830379 AAAAAATATATAT
1 AAAAAATATAAAT
*
62830392 ATAAAATATAAAT
1 AAAAAATATAAAT
62830405 AAAAAATA-AAAT
1 AAAAAATATAAAT
62830417 AA
1 AA
62830419 TTCAAATAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
12 6 0.25
13 18 0.75
ACGTcount: A:0.75, C:0.00, G:0.00, T:0.25
Consensus pattern (13 bp):
AAAAAATATAAAT
Found at i:62831675 original size:18 final size:18
Alignment explanation
Indices: 62831654--62831742 Score: 58
Period size: 19 Copynumber: 4.9 Consensus size: 18
62831644 AATTCTATAT
62831654 ATTTTATAATTTTTTAAGA
1 ATTTTATAATTTTTTAA-A
* **
62831673 TTTTTATAAAATTTTACAA
1 ATTTTATAATTTTTTA-AA
*
62831692 ATTTT-TATTTTTTTAAAA
1 ATTTTATAATTTTTT-AAA
* * *
62831710 ATTTTAATAAATTTATAAT
1 ATTTT-ATAATTTTTTAAA
62831729 A-TTTA-AATTTTTTA
1 ATTTTATAATTTTTTA
62831743 TTAAAATTTA
Statistics
Matches: 53, Mismatches: 13, Indels: 11
0.69 0.17 0.14
Matches are distributed among these distances:
16 7 0.13
17 1 0.02
18 16 0.30
19 22 0.42
20 7 0.13
ACGTcount: A:0.39, C:0.01, G:0.01, T:0.58
Consensus pattern (18 bp):
ATTTTATAATTTTTTAAA
Found at i:62831680 original size:28 final size:29
Alignment explanation
Indices: 62831601--62831698 Score: 92
Period size: 28 Copynumber: 3.4 Consensus size: 29
62831591 TTACATTTTG
* *
62831601 TATAATTTTCTTACGACTT-TATAAAATTT
1 TATAATTTT-TTAAGAATTCTATAAAATTT
* * *
62831630 TATAATTTTTTTATAATTCTAT-ATATTT
1 TATAATTTTTTAAGAATTCTATAAAATTT
* *
62831658 TATAATTTTTTAAGATTTTTATAAAATTT
1 TATAATTTTTTAAGAATTCTATAAAATTT
* *
62831687 TACAAATTTTTA
1 TATAATTTTTTA
62831699 TTTTTTTAAA
Statistics
Matches: 55, Mismatches: 12, Indels: 4
0.77 0.17 0.06
Matches are distributed among these distances:
28 28 0.51
29 27 0.49
ACGTcount: A:0.36, C:0.05, G:0.02, T:0.57
Consensus pattern (29 bp):
TATAATTTTTTAAGAATTCTATAAAATTT
Found at i:62831733 original size:27 final size:29
Alignment explanation
Indices: 62831703--62831762 Score: 70
Period size: 27 Copynumber: 2.1 Consensus size: 29
62831693 TTTTTATTTT
62831703 TTTAAAAATTTTAAT-AAATTT-ATAATA
1 TTTAAAAATTTTAATAAAATTTAATAATA
** * *
62831730 TTTAAATTTTTTATTAAAATTTAATAGTA
1 TTTAAAAATTTTAATAAAATTTAATAATA
62831759 TTTA
1 TTTA
62831763 TAGCTTTTAT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
27 12 0.44
28 6 0.22
29 9 0.33
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (29 bp):
TTTAAAAATTTTAATAAAATTTAATAATA
Found at i:62831934 original size:87 final size:86
Alignment explanation
Indices: 62831832--62832010 Score: 270
Period size: 87 Copynumber: 2.1 Consensus size: 86
62831822 TTCTTTTTTT
* * *
62831832 AAGTTTGAGGGTCTTTTTGATGAATTTTGAAAGTTTAAGT-CCCAATTGAGTGAAAAAAAGATAG
1 AAGTTTGAGGATCTTTTTGATGAATTTTGAAAGTTTAAGTACCCAAATGAGAGAAAAAAA-A-AG
*
62831896 GGGCTTAATTGCTTTTTTTGAAA
64 GGGCTTAATTGCTTATTTTGAAA
* * *
62831919 AGGTTTGAGGATCTTTTTGATGCATTTTGAAAGTTTAAGTACCCAAATGAGAGCAAAAAAAAGGG
1 AAGTTTGAGGATCTTTTTGATGAATTTTGAAAGTTTAAGTACCCAAATGAGAGAAAAAAAAAGGG
62831984 GCTTAATTGCTTATTTTGAAA
66 GCTTAATTGCTTATTTTGAAA
62832005 AAGTTT
1 AAGTTT
62832011 AAAGACTTTT
Statistics
Matches: 83, Mismatches: 8, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
86 29 0.35
87 38 0.46
88 16 0.19
ACGTcount: A:0.34, C:0.08, G:0.22, T:0.36
Consensus pattern (86 bp):
AAGTTTGAGGATCTTTTTGATGAATTTTGAAAGTTTAAGTACCCAAATGAGAGAAAAAAAAAGGG
GCTTAATTGCTTATTTTGAAA
Found at i:62832482 original size:25 final size:24
Alignment explanation
Indices: 62832453--62832500 Score: 71
Period size: 26 Copynumber: 2.0 Consensus size: 24
62832443 AAATAAAAAA
62832453 ATTT-AAAATATAATAAATCAAATAC
1 ATTTAAAAATATAA-AAA-CAAATAC
62832478 ATTTAAAAATATAAAAACAAATA
1 ATTTAAAAATATAAAAACAAATA
62832501 TTAAAACAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
24 6 0.27
25 7 0.32
26 9 0.41
ACGTcount: A:0.65, C:0.06, G:0.00, T:0.29
Consensus pattern (24 bp):
ATTTAAAAATATAAAAACAAATAC
Found at i:62832490 original size:26 final size:23
Alignment explanation
Indices: 62832453--62832519 Score: 70
Period size: 19 Copynumber: 3.0 Consensus size: 23
62832443 AAATAAAAAA
62832453 ATTTAAAATATAATAAATCAAATAC
1 ATTTAAAATATAA-AAA-CAAATAC
62832478 ATTTAAAAATATAAAAACAAAT--
1 ATTT-AAAATATAAAAACAAATAC
*
62832500 A-TTAAAACA-AAAAACAAATA
1 ATTTAAAATATAAAAACAAATA
62832520 AAAAATGAGA
Statistics
Matches: 39, Mismatches: 1, Indels: 9
0.80 0.02 0.18
Matches are distributed among these distances:
19 10 0.26
20 5 0.13
21 2 0.05
22 1 0.03
24 5 0.13
25 7 0.18
26 9 0.23
ACGTcount: A:0.67, C:0.07, G:0.00, T:0.25
Consensus pattern (23 bp):
ATTTAAAATATAAAAACAAATAC
Found at i:62832738 original size:15 final size:16
Alignment explanation
Indices: 62832718--62832747 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
62832708 AAAGTTACTT
62832718 AAAA-TTAAAAATAAA
1 AAAATTTAAAAATAAA
62832733 AAAATTTAAAAATAA
1 AAAATTTAAAAATAA
62832748 TTTAATATTA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (16 bp):
AAAATTTAAAAATAAA
Found at i:62843070 original size:92 final size:93
Alignment explanation
Indices: 62842912--62843108 Score: 324
Period size: 92 Copynumber: 2.1 Consensus size: 93
62842902 ATGTGCACTA
* * **
62842912 TACTCTTTTTCCTTTAACCGAGGTTTTGTCCCATTGGGTTTTCTTGGTAAGGTTTTTAATGAGGC
1 TACTCTTTTTCCCTTAACCGAAGTTTTGTCCCATTAAGTTTTCTTGGTAAGGTTTTTAATGAGGC
62842977 AGCATATTATACGTATTATAGATATGTG
66 AGCATATTATACGTATTATAGATATGTG
62843005 TACTCTTTTTCCCTTAACCGAAGTTTTGT-CCATTAAGTTTTCTTGGTAAGGTTTTTAATGAGGC
1 TACTCTTTTTCCCTTAACCGAAGTTTTGTCCCATTAAGTTTTCTTGGTAAGGTTTTTAATGAGGC
**
62843069 AGCATATTATGTGTATTATAGATATGTG
66 AGCATATTATACGTATTATAGATATGTG
*
62843097 TACTTTTTTTCC
1 TACTCTTTTTCC
62843109 TTTACTAGGA
Statistics
Matches: 97, Mismatches: 7, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
92 70 0.72
93 27 0.28
ACGTcount: A:0.22, C:0.14, G:0.18, T:0.46
Consensus pattern (93 bp):
TACTCTTTTTCCCTTAACCGAAGTTTTGTCCCATTAAGTTTTCTTGGTAAGGTTTTTAATGAGGC
AGCATATTATACGTATTATAGATATGTG
Found at i:62845381 original size:12 final size:11
Alignment explanation
Indices: 62845341--62845381 Score: 55
Period size: 12 Copynumber: 3.5 Consensus size: 11
62845331 TTAATATTTA
62845341 AATTTCTTATTC
1 AATTTC-TATTC
62845353 AATTTCTATTC
1 AATTTCTATTC
*
62845364 AATTTCTACTTT
1 AATTTCTA-TTC
62845376 AATTTC
1 AATTTC
62845382 AATTTTAATC
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
11 13 0.48
12 14 0.52
ACGTcount: A:0.27, C:0.17, G:0.00, T:0.56
Consensus pattern (11 bp):
AATTTCTATTC
Found at i:62845886 original size:5 final size:5
Alignment explanation
Indices: 62845876--62845914 Score: 78
Period size: 5 Copynumber: 7.8 Consensus size: 5
62845866 ATTAAACTAT
62845876 TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATA
1 TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATA
62845915 TTTATTTATT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 34 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (5 bp):
TATAA
Found at i:62847202 original size:30 final size:30
Alignment explanation
Indices: 62847168--62847226 Score: 100
Period size: 30 Copynumber: 2.0 Consensus size: 30
62847158 TATCTTATTT
* *
62847168 TATTAACAAGATAAAAAAAGCATATACTTA
1 TATTAACAAGATAAAAAAAACACATACTTA
62847198 TATTAACAAGATAAAAAAAACACATACTT
1 TATTAACAAGATAAAAAAAACACATACTT
62847227 TTACCTTTAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.58, C:0.12, G:0.05, T:0.25
Consensus pattern (30 bp):
TATTAACAAGATAAAAAAAACACATACTTA
Found at i:62865346 original size:27 final size:28
Alignment explanation
Indices: 62865262--62865359 Score: 135
Period size: 27 Copynumber: 3.5 Consensus size: 28
62865252 CATGAGATTG
* * * *
62865262 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
62865291 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
62865319 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
62865346 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
62865360 GACTTAATAT
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 24 0.38
28 22 0.34
29 18 0.28
ACGTcount: A:0.27, C:0.13, G:0.29, T:0.32
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:62865370 original size:27 final size:27
Alignment explanation
Indices: 62865290--62865372 Score: 96
Period size: 27 Copynumber: 3.0 Consensus size: 27
62865280 TAAATTGTAC
* *
62865290 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
62865318 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGAATATAT
*
62865345 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-GACTTGAATATAT
62865372 A
1 A
62865373 TTTTTGAATC
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
27 30 0.60
28 20 0.40
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGAATATAT
Found at i:62865373 original size:29 final size:27
Alignment explanation
Indices: 62865262--62865373 Score: 98
Period size: 28 Copynumber: 4.0 Consensus size: 27
62865252 CATGAGATTG
** * *
62865262 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGC-GACTT-AATTATATA
* *
62865291 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGA-CTTAATTATATA
* *
62865319 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGACTTAATTATATA
*
62865346 GCACTGAGTGTGCGGACTTAATATATAT
1 GCACTAAGTGTGC-GACTTAAT-TATAT
62865374 TTTTGAATCA
Statistics
Matches: 72, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
27 23 0.32
28 28 0.39
29 21 0.29
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (27 bp):
GCACTAAGTGTGCGACTTAATTATATA
Found at i:62871971 original size:46 final size:46
Alignment explanation
Indices: 62871904--62872025 Score: 144
Period size: 46 Copynumber: 2.7 Consensus size: 46
62871894 TGTGTGCCAA
*
62871904 TGTAAGACATGTCTGAGACATGCATCAGCCACATT-ACGAGA-TCTAG
1 TGTAAGACATGTCTGGGACATGCATCAGCCA-ATTGACGAGAGT-TAG
* *
62871950 TGTAAGACATGTTTGGGACATGCATCAG--ATTTGAGACGAGAGTTAG
1 TGTAAGACATGTCTGGGACATGCATCAGCCAATT--GACGAGAGTTAG
*
62871996 TGTAAGACATGTCTAGGACATGCATCAGCC
1 TGTAAGACATGTCTGGGACATGCATCAGCC
62872026 TTGAGATATA
Statistics
Matches: 65, Mismatches: 5, Indels: 10
0.81 0.06 0.12
Matches are distributed among these distances:
43 2 0.03
44 1 0.02
46 61 0.94
47 1 0.02
ACGTcount: A:0.31, C:0.18, G:0.25, T:0.25
Consensus pattern (46 bp):
TGTAAGACATGTCTGGGACATGCATCAGCCAATTGACGAGAGTTAG
Found at i:62875977 original size:28 final size:28
Alignment explanation
Indices: 62875941--62876043 Score: 143
Period size: 28 Copynumber: 3.7 Consensus size: 28
62875931 TGGCCCCTTT
* *
62875941 AGGCCCAATCTCATTCATATGGCCTATT
1 AGGCCCAATCACATTCATATGGCCTATC
*
62875969 AGGCCCAATCACATTCATATGGCCCATC
1 AGGCCCAATCACATTCATATGGCCTATC
* * *
62875997 AAGCCCAATCACTTTCATATGGCCTGTC
1 AGGCCCAATCACATTCATATGGCCTATC
*
62876025 AGGCCCAATCACACTCATA
1 AGGCCCAATCACATTCATA
62876044 GTCATGCAAT
Statistics
Matches: 65, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
28 65 1.00
ACGTcount: A:0.28, C:0.33, G:0.14, T:0.25
Consensus pattern (28 bp):
AGGCCCAATCACATTCATATGGCCTATC
Found at i:62876280 original size:16 final size:16
Alignment explanation
Indices: 62876259--62876292 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
62876249 CCAAACTTCT
62876259 GGCTTTTCAACATTTC
1 GGCTTTTCAACATTTC
**
62876275 GGCTTTTCGGCATTTC
1 GGCTTTTCAACATTTC
62876291 GG
1 GG
62876293 AATTTGTCGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.12, C:0.24, G:0.24, T:0.41
Consensus pattern (16 bp):
GGCTTTTCAACATTTC
Found at i:62884489 original size:24 final size:23
Alignment explanation
Indices: 62884462--62884512 Score: 59
Period size: 24 Copynumber: 2.1 Consensus size: 23
62884452 TTTTCTCTTA
*
62884462 AATTTT-AATTTTATTCTAATAATT
1 AATTTTCAA-TTTATT-GAATAATT
62884486 AATTTTTCAATTTATTGAATAATT
1 AA-TTTTCAATTTATTGAATAATT
62884510 AAT
1 AAT
62884513 AATTATTCTT
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
23 1 0.04
24 11 0.46
25 10 0.42
26 2 0.08
ACGTcount: A:0.39, C:0.04, G:0.02, T:0.55
Consensus pattern (23 bp):
AATTTTCAATTTATTGAATAATT
Found at i:62886182 original size:27 final size:27
Alignment explanation
Indices: 62886152--62886329 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
62886142 ATATTGAGTC
* * * *
62886152 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
62886179 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
62886206 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
62886234 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
62886261 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
62886288 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
62886315 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
62886330 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:62886291 original size:82 final size:81
Alignment explanation
Indices: 62886173--62886328 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
62886163 TGCTATATAA
* *
62886173 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
62886238 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
62886255 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
62886319 CACTTAGTGC
65 CACTTAGTGC
62886329 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:62894293 original size:27 final size:27
Alignment explanation
Indices: 62894263--62894440 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
62894253 ATATTGAGTC
* * * *
62894263 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
62894290 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
62894317 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
62894345 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
62894372 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
62894399 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
62894426 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
62894441 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:62894402 original size:82 final size:81
Alignment explanation
Indices: 62894284--62894439 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
62894274 TGCTATATAA
* *
62894284 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
62894349 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
62894366 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
62894430 CACTTAGTGC
65 CACTTAGTGC
62894440 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:62894591 original size:2 final size:2
Alignment explanation
Indices: 62894584--62894615 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
62894574 ACGTACATGC
*
62894584 AT AT AT AT AT AT AT AT AT AT AT AT AT GT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
62894616 TTATTCATTC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (2 bp):
AT
Found at i:62901995 original size:42 final size:43
Alignment explanation
Indices: 62901936--62902049 Score: 140
Period size: 42 Copynumber: 2.7 Consensus size: 43
62901926 AATTAAGAAG
* * * **
62901936 TCCGAACTCGTTGAGTGGTCCGGGTTCGTGATATATG-TGGCA
1 TCCGAACTCGTTGAGTGGTCCGAGTTCATGATAGATGCAAGCA
* *
62901978 TCCGAACTCGTTGAGTGGTCCGAGTTCATTATGGATGCAAGCA
1 TCCGAACTCGTTGAGTGGTCCGAGTTCATGATAGATGCAAGCA
* *
62902021 TCCGAGCTCGTTGAGTGGTCTGAGTTCAT
1 TCCGAACTCGTTGAGTGGTCCGAGTTCAT
62902050 AATGGATGTG
Statistics
Matches: 62, Mismatches: 9, Indels: 1
0.86 0.12 0.01
Matches are distributed among these distances:
42 32 0.52
43 30 0.48
ACGTcount: A:0.18, C:0.20, G:0.31, T:0.31
Consensus pattern (43 bp):
TCCGAACTCGTTGAGTGGTCCGAGTTCATGATAGATGCAAGCA
Found at i:62902036 original size:43 final size:43
Alignment explanation
Indices: 62901936--62902057 Score: 147
Period size: 43 Copynumber: 2.9 Consensus size: 43
62901926 AATTAAGAAG
* * * ** **
62901936 TCCGAACTCGTTGAGTGGTCCGGGTTCGTGATATATG-TGGCA
1 TCCGAACTCGTTGAGTGGTCCGAGTTCATAATGGATGCAAGCA
*
62901978 TCCGAACTCGTTGAGTGGTCCGAGTTCATTATGGATGCAAGCA
1 TCCGAACTCGTTGAGTGGTCCGAGTTCATAATGGATGCAAGCA
* *
62902021 TCCGAGCTCGTTGAGTGGTCTGAGTTCATAATGGATG
1 TCCGAACTCGTTGAGTGGTCCGAGTTCATAATGGATG
62902058 TGATACATGT
Statistics
Matches: 69, Mismatches: 10, Indels: 1
0.86 0.12 0.01
Matches are distributed among these distances:
42 32 0.46
43 37 0.54
ACGTcount: A:0.20, C:0.19, G:0.31, T:0.30
Consensus pattern (43 bp):
TCCGAACTCGTTGAGTGGTCCGAGTTCATAATGGATGCAAGCA
Found at i:62905538 original size:40 final size:40
Alignment explanation
Indices: 62905483--62905709 Score: 418
Period size: 40 Copynumber: 5.7 Consensus size: 40
62905473 AACATTGGAT
*
62905483 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGATGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
62905523 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
62905563 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
* *
62905603 TGTATCCGGGCTAAGACCCGAAGGCAACTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
62905643 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
*
62905683 TATATCCGGGTTAAGACCCGAAGGCAA
1 TATATCCGGGCTAAGACCCGAAGGCAA
62905710 ATGTGTTTGT
Statistics
Matches: 181, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 181 1.00
ACGTcount: A:0.30, C:0.21, G:0.28, T:0.21
Consensus pattern (40 bp):
TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
Found at i:62907285 original size:13 final size:13
Alignment explanation
Indices: 62907267--62907291 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
62907257 AATTGACCAC
62907267 ATGGCCATGTGAT
1 ATGGCCATGTGAT
62907280 ATGGCCATGTGA
1 ATGGCCATGTGA
62907292 CACTAAATTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.16, G:0.32, T:0.28
Consensus pattern (13 bp):
ATGGCCATGTGAT
Found at i:62927285 original size:79 final size:81
Alignment explanation
Indices: 62927120--62927303 Score: 198
Period size: 79 Copynumber: 2.3 Consensus size: 81
62927110 TGAATGATGT
* *
62927120 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAATT
* *
62927184 GTTCGAGATACTAATT
66 GTGCGAGATACTAATA
* * * * **
62927200 CTGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAAT
*
62927262 TGTGCGAGTTACT-ATAA
65 TGTGCGAGATACTAAT-A
* *
62927279 CCGGGCTATGTCCCGATGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
62927304 AACGAGTAGC
Statistics
Matches: 86, Mismatches: 14, Indels: 8
0.80 0.13 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.63
80 29 0.34
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.26
Consensus pattern (81 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAATT
GTGCGAGATACTAATA
Found at i:62927310 original size:40 final size:40
Alignment explanation
Indices: 62927119--62927303 Score: 198
Period size: 40 Copynumber: 4.7 Consensus size: 40
62927109 TTGAATGATG
* * * *
62927119 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * * *
62927159 TCCGGACTAAGAT-CCGAAGGCATTTGTTCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
62927199 TCTGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
62927238 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
62927279 -CCGGGCTATGTCCCGATGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
62927304 AACGAGTAGC
Statistics
Matches: 120, Mismatches: 20, Indels: 10
0.80 0.13 0.07
Matches are distributed among these distances:
39 33 0.28
40 78 0.65
41 9 0.08
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:62935115 original size:79 final size:81
Alignment explanation
Indices: 62934979--62935163 Score: 218
Period size: 79 Copynumber: 2.3 Consensus size: 81
62934969 TTGAATGATG
* *
62934979 TTCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TTCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
62935043 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
62935058 TTTCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TTCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
62935120 ATTGTGCGAGTTACTATA
64 ATTGTGCGAGATACTATA
** *
62935138 ACCGGGCTATGTCCCGAAGGCATTTG
1 TTCGGGCTAAGTCCCGAAGGCATTTG
62935164 AACGAGTAGC
Statistics
Matches: 90, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
78 1 0.01
79 56 0.62
80 33 0.37
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (81 bp):
TTCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
TGTGCGAGATACTATA
Found at i:62935170 original size:40 final size:40
Alignment explanation
Indices: 62934981--62935163 Score: 212
Period size: 40 Copynumber: 4.6 Consensus size: 40
62934971 GAATGATGTT
* * * *
62934981 CGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATC
* * * *
62935021 CGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAATTT
1 CGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAATC
62935061 CGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATC
* *
62935100 CGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA-C
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AATC
*
62935140 CGGGCTATGTCCCGAAGGCATTTG
1 CGGGCTAAGTCCCGAAGGCATTTG
62935164 AACGAGTAGC
Statistics
Matches: 121, Mismatches: 17, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
39 34 0.28
40 77 0.64
41 10 0.08
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATC
Found at i:62935185 original size:79 final size:79
Alignment explanation
Indices: 62935032--62935196 Score: 192
Period size: 79 Copynumber: 2.1 Consensus size: 79
62935022 GGACTAAGAT
* ** **
62935032 CCGAAGGCATTTGTGCGAGATACTAATTTCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
62935097 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
62935111 CCGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCAATTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
62935174 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
62935190 CCGAAGG
1 CCGAAGG
62935197 TACGTGATTT
Statistics
Matches: 73, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
78 2 0.03
79 46 0.63
80 25 0.34
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:62943309 original size:37 final size:37
Alignment explanation
Indices: 62943247--62943385 Score: 224
Period size: 37 Copynumber: 3.8 Consensus size: 37
62943237 AGCTCAGACG
* * *
62943247 AAATCTCCACACGAAGTTATTGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
62943284 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
* *
62943321 TAATCTCCACACGTAGTCATCGGGTCTTACCTGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
62943358 TAATCTCCACACGTAGTCATCGGGTCTT
1 AAATCTCCACACGTAGTCATCGGGTCTT
62943386 TAGAGCTCGG
Statistics
Matches: 97, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 97 1.00
ACGTcount: A:0.26, C:0.29, G:0.19, T:0.26
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:62943622 original size:38 final size:42
Alignment explanation
Indices: 62943571--62944192 Score: 389
Period size: 49 Copynumber: 13.0 Consensus size: 42
62943561 ATATACACTT
62943571 TCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACA
1 TCACATT-ATCACATCGGCTATTAGGCCTTATCACATATATA-A
62943615 CTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACA
1 ---TCACATT-ATCACATCGGCTATTAGGCCTTATCACATATATA-A
*
62943662 CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACA
1 ---TCACATT-ATCACATCGGCTATTAGGCCTTATCAC--ATATATA-A
* * *
62943711 CTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACA
1 ---TCACATT-ATCACATCGGCTATTAGGCCTTATCACATATATA-A
* *
62943758 CTTTCACATTCATCATATCGGCCATTAGGCCTTATCACATATAGATACA
1 ---TCACATT-ATCACATCGGCTATTAGGCCTTATCACATAT--ATA-A
* * * *
62943807 CTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATACACA
1 ---TCACATT-ATCACATCGGCTATTAGGCCTTATCACATATATA-A
*
62943854 CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACA
1 ---TCACATT-ATCACATCGGCTATTAGGCCTTATCAC--ATATATA-A
*
62943903 CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATATACA
1 ---TCACATT-ATCACATCGGCTATTAGGCCTTATCAC----ATATATA-A
*
62943954 CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACA
1 ---TCACATT-ATCACATCGGCTATTAGGCCTTATCAC--ATATATA-A
*
62944003 CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATGTATATACA
1 ---TCACATT-ATCACATCGGCTATTAGGCCTTATCACA--TATATA-A
* * *
62944052 CTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACA
1 ---TCACATT-ATCACATCGGCTATTAGGCCTTATCACATATATA-A
*
62944099 CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACA
1 ---TCACATT-ATCACATCGGCTATTAGGCCTTATCAC--ATATATA-A
62944148 CTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATA
1 ---TCACATT-ATCACATCGGCTATTAGGCCTTATCACATATATA
62944193 CACTTTCACA
Statistics
Matches: 545, Mismatches: 18, Indels: 24
0.93 0.03 0.04
Matches are distributed among these distances:
47 221 0.41
49 275 0.50
51 49 0.09
ACGTcount: A:0.30, C:0.28, G:0.09, T:0.33
Consensus pattern (42 bp):
TCACATTATCACATCGGCTATTAGGCCTTATCACATATATAA
Found at i:62943725 original size:49 final size:49
Alignment explanation
Indices: 62943504--62944204 Score: 1092
Period size: 47 Copynumber: 14.6 Consensus size: 49
62943494 CCCTTCGGGA
* * * * *
62943504 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
62943551 CCTGTCAC--ATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
62943598 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
62943645 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
62943692 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
62943741 CTTATCAC--ATATATACACTTTCACATTCATCATATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
62943788 CTTATCACATATAGATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
62943837 CTTATCAC--ATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
62943884 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
62943933 CTTATCACATATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
62943984 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
62944033 CTTATCACATGTATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
62944082 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
62944129 CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
62944178 CTTATCAC--ATATATACACTTTCACATT
1 CTTATCACATATATATACACTTTCACATT
62944205 TATTCAAATA
Statistics
Matches: 610, Mismatches: 32, Indels: 24
0.92 0.05 0.04
Matches are distributed among these distances:
46 1 0.00
47 285 0.47
49 275 0.45
51 49 0.08
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:62943742 original size:96 final size:96
Alignment explanation
Indices: 62943504--62944204 Score: 1103
Period size: 96 Copynumber: 7.3 Consensus size: 96
62943494 CCCTTCGGGA
* * * * * * *
62943504 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
62943567 ACTTTCACATTCATCACATCGGCTATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
*
62943598 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
62943661 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
* *
62943692 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
62943757 ACTTTCACATTCATCATATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
* * * *
62943788 CTTATCACATATAGATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATACAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
62943853 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
62943884 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC----ATAT
62943949 ATACACTTTCACATTCATCACATCGGCCATTAGGC
62 ATACACTTTCACATTCATCACATCGGCCATTAGGC
62943984 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATGTATAT
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA--TATAT
* *
62944049 ACACTTTCACATTCATCACATTGGCCATTCGGC
64 ACACTTTCACATTCATCACATCGGCCATTAGGC
62944082 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATAT
*
62944145 ACACTTTCACATTCATCACATCGGCTATTAGGC
64 ACACTTTCACATTCATCACATCGGCCATTAGGC
62944178 CTTATCAC--ATATATACACTTTCACATT
1 CTTATCACATATATATACACTTTCACATT
62944205 TATTCAAATA
Statistics
Matches: 570, Mismatches: 25, Indels: 22
0.92 0.04 0.04
Matches are distributed among these distances:
93 1 0.00
94 90 0.16
96 339 0.59
98 45 0.08
100 95 0.17
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (96 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:62958976 original size:154 final size:155
Alignment explanation
Indices: 62958690--62958984 Score: 511
Period size: 154 Copynumber: 1.9 Consensus size: 155
62958680 TAGTTTAACA
*
62958690 TCCTCATTTAATCCTTCCTCGAAGCGTTTTCACAATTTTGCTTCATTCTGAACCCACTCTTGGGC
1 TCCTCATTTAATCCTTCCTCGAAGCGTTTGCACAATTTTGCTTCATTCTGAACCCACTCTTGGGC
* *
62958755 ATGTTGGCTCAGTCGGACAAACTCCCGTTCATATTCTGACACAATCCATTCCCCTTGCTTAAGCT
66 ATGCTGGCTCAGTCGGACAAACTCCCGTTCATATTCTGACACAACCCATTCCCCTTGCTTAAGCT
62958820 CTAGAAATTCTGACATGGTATAAAC
131 CTAGAAATTCTGACATGGTATAAAC
* *
62958845 TCCTCATTTAATCCTTCCTCGAAGTGTTTGCACAATTTTGCTTCATTTTGAACCCACTCTTGGGC
1 TCCTCATTTAATCCTTCCTCGAAGCGTTTGCACAATTTTGCTTCATTCTGAACCCACTCTTGGGC
* * *
62958910 AT-CTGGCTCAGTCGGACAAACTCTCGTTCGTATTCTGACACAGCCCATTCCCCTTGCTTAAGCT
66 ATGCTGGCTCAGTCGGACAAACTCCCGTTCATATTCTGACACAACCCATTCCCCTTGCTTAAGCT
62958974 CTAGAAATTCT
131 CTAGAAATTCT
62958985 TTCCTCTTTA
Statistics
Matches: 132, Mismatches: 8, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
154 68 0.52
155 64 0.48
ACGTcount: A:0.22, C:0.29, G:0.15, T:0.34
Consensus pattern (155 bp):
TCCTCATTTAATCCTTCCTCGAAGCGTTTGCACAATTTTGCTTCATTCTGAACCCACTCTTGGGC
ATGCTGGCTCAGTCGGACAAACTCCCGTTCATATTCTGACACAACCCATTCCCCTTGCTTAAGCT
CTAGAAATTCTGACATGGTATAAAC
Found at i:62962576 original size:21 final size:21
Alignment explanation
Indices: 62962551--62962594 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
62962541 GACCTCATAA
62962551 TAATCATAAAATAATTATTTC
1 TAATCATAAAATAATTATTTC
62962572 TAATCATAAAATAATTATTTC
1 TAATCATAAAATAATTATTTC
62962593 TA
1 TA
62962595 CTTCAATTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.48, C:0.09, G:0.00, T:0.43
Consensus pattern (21 bp):
TAATCATAAAATAATTATTTC
Found at i:62981309 original size:13 final size:14
Alignment explanation
Indices: 62981271--62981300 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
62981261 ACCCTTTTCC
62981271 AAAA-AAGAAAAGA
1 AAAAGAAGAAAAGA
62981284 AAAAGAAGAAAAGA
1 AAAAGAAGAAAAGA
62981298 AAA
1 AAA
62981301 TGGAGAAAGG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 4 0.25
14 12 0.75
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (14 bp):
AAAAGAAGAAAAGA
Found at i:62981721 original size:12 final size:12
Alignment explanation
Indices: 62981704--62981733 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
62981694 CCCCACACGC
62981704 CTGTGTGTTAGG
1 CTGTGTGTTAGG
62981716 CTGTGTGTTAGG
1 CTGTGTGTTAGG
*
62981728 CAGTGT
1 CTGTGT
62981734 AACTCACTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.10, C:0.10, G:0.40, T:0.40
Consensus pattern (12 bp):
CTGTGTGTTAGG
Found at i:62986862 original size:21 final size:21
Alignment explanation
Indices: 62986838--62986880 Score: 70
Period size: 21 Copynumber: 2.0 Consensus size: 21
62986828 AATGAAGTGG
62986838 AGCTCATTTA-GATCTATAAGT
1 AGCTCATTTATG-TCTATAAGT
62986859 AGCTCATTTATGTCTATAAGT
1 AGCTCATTTATGTCTATAAGT
62986880 A
1 A
62986881 CTTTATTTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
21 20 0.95
22 1 0.05
ACGTcount: A:0.33, C:0.14, G:0.14, T:0.40
Consensus pattern (21 bp):
AGCTCATTTATGTCTATAAGT
Found at i:62995596 original size:5 final size:5
Alignment explanation
Indices: 62995586--62995672 Score: 174
Period size: 5 Copynumber: 17.4 Consensus size: 5
62995576 TTATGTTTTA
62995586 ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT
1 ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT
62995636 ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT AT
1 ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT AT
62995673 AAACTAAAGA
Statistics
Matches: 82, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 82 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (5 bp):
ATTAT
Found at i:62996963 original size:15 final size:15
Alignment explanation
Indices: 62996943--62996999 Score: 89
Period size: 15 Copynumber: 3.9 Consensus size: 15
62996933 CGATGAATTT
*
62996943 ATTGAATTTATATTG
1 ATTGAAATTATATTG
*
62996958 ATTGAAATTATTTTG
1 ATTGAAATTATATTG
62996973 ATTGAAATTATATTG
1 ATTGAAATTATATTG
62996988 ATTG-AATTATAT
1 ATTGAAATTATAT
62997000 AATATATATG
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
14 8 0.21
15 31 0.79
ACGTcount: A:0.37, C:0.00, G:0.12, T:0.51
Consensus pattern (15 bp):
ATTGAAATTATATTG
Found at i:62997411 original size:23 final size:23
Alignment explanation
Indices: 62997385--62997443 Score: 72
Period size: 21 Copynumber: 2.7 Consensus size: 23
62997375 GCACTTTATG
62997385 TGTCGTATTTTAGGCACCTCGTA
1 TGTCGTATTTTAGGCACCTCGTA
* *
62997408 TGTCGTA--TCAGGCACCTCGTG
1 TGTCGTATTTTAGGCACCTCGTA
62997429 TGTCG--TTTTAGGCAC
1 TGTCGTATTTTAGGCAC
62997444 TTTATGTGTT
Statistics
Matches: 31, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
21 24 0.77
23 7 0.23
ACGTcount: A:0.15, C:0.24, G:0.25, T:0.36
Consensus pattern (23 bp):
TGTCGTATTTTAGGCACCTCGTA
Found at i:62997451 original size:21 final size:21
Alignment explanation
Indices: 62997373--62997452 Score: 61
Period size: 21 Copynumber: 3.7 Consensus size: 21
62997363 TTTACCGATC
* *
62997373 AGGCACTTTATGTGTCGTATTTT
1 AGGCACCTCATGTGTCG--TTTT
* * * *
62997396 AGGCACCTCGTATGTCGTATC
1 AGGCACCTCATGTGTCGTTTT
*
62997417 AGGCACCTCGTGTGTCGTTTT
1 AGGCACCTCATGTGTCGTTTT
* *
62997438 AGGCACTTTATGTGT
1 AGGCACCTCATGTGT
62997453 TGTACTCTGA
Statistics
Matches: 45, Mismatches: 12, Indels: 2
0.76 0.20 0.03
Matches are distributed among these distances:
21 32 0.71
23 13 0.29
ACGTcount: A:0.16, C:0.20, G:0.25, T:0.39
Consensus pattern (21 bp):
AGGCACCTCATGTGTCGTTTT
Found at i:63001567 original size:27 final size:27
Alignment explanation
Indices: 63001536--63001713 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
63001526 TAAATTGTAC
63001536 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
63001563 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
63001589 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
63001617 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
63001645 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
63001672 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
63001699 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
63001714 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:63001650 original size:82 final size:81
Alignment explanation
Indices: 63001537--63001692 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
63001527 AAATTGTACA
* *
63001537 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
63001601 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
63001618 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
63001683 TGCGAGTTGA
65 TGCGAATTGA
63001693 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:63001704 original size:82 final size:81
Alignment explanation
Indices: 63001533--63001713 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
63001523 GATTAAATTG
* *
63001533 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
63001598 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
63001614 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
63001678 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
63001696 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
63001714 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:63005723 original size:22 final size:23
Alignment explanation
Indices: 63005695--63005737 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
63005685 CAAATATATG
63005695 AACAGAT-ATCAGAATTCATGCA
1 AACAGATGATCAGAATTCATGCA
*
63005717 AACAGATGATCAGATTTCATG
1 AACAGATGATCAGAATTCATG
63005738 TTTTATAGTC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 7 0.37
23 12 0.63
ACGTcount: A:0.42, C:0.16, G:0.16, T:0.26
Consensus pattern (23 bp):
AACAGATGATCAGAATTCATGCA
Found at i:63008579 original size:14 final size:14
Alignment explanation
Indices: 63008560--63008586 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
63008550 TATTAGTAAT
63008560 TTTTTAAATATTTC
1 TTTTTAAATATTTC
63008574 TTTTTAAATATTT
1 TTTTTAAATATTT
63008587 TACCATACTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.30, C:0.04, G:0.00, T:0.67
Consensus pattern (14 bp):
TTTTTAAATATTTC
Found at i:63016181 original size:16 final size:17
Alignment explanation
Indices: 63016160--63016192 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
63016150 AAATTCTATC
63016160 AAAATTCTT-AATTTAA
1 AAAATTCTTGAATTTAA
*
63016176 AAAATTTTTGAATTTAA
1 AAAATTCTTGAATTTAA
63016193 TTTTTTAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.48, C:0.03, G:0.03, T:0.45
Consensus pattern (17 bp):
AAAATTCTTGAATTTAA
Found at i:63016353 original size:48 final size:48
Alignment explanation
Indices: 63016301--63016437 Score: 186
Period size: 50 Copynumber: 2.8 Consensus size: 48
63016291 AGTGATAATT
*
63016301 TTAAATTTTCAATACTATTTGATATTTTTTTAATTTATGCAAATT-TAA
1 TTAAATTTTCAATACTATTTGATATTTTTTTCATTTATGC-AATTATAA
* *
63016349 TTAAATTTGCACAATACTATTTGATATTTTATTCATTTATGCAATTATAA
1 TTAAATTT--TCAATACTATTTGATATTTTTTTCATTTATGCAATTATAA
* * *
63016399 TTAAAATTTCAATACTACTTGATTTTTTTTTCATTTATG
1 TTAAATTTTCAATACTATTTGATATTTTTTTCATTTATG
63016438 ATATTTGCAT
Statistics
Matches: 78, Mismatches: 8, Indels: 6
0.85 0.09 0.07
Matches are distributed among these distances:
48 35 0.45
49 4 0.05
50 39 0.50
ACGTcount: A:0.34, C:0.09, G:0.05, T:0.53
Consensus pattern (48 bp):
TTAAATTTTCAATACTATTTGATATTTTTTTCATTTATGCAATTATAA
Found at i:63016466 original size:23 final size:23
Alignment explanation
Indices: 63016431--63016475 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
63016421 TTTTTTTTTC
*
63016431 ATTTATGATATTTGCATTAATTA
1 ATTTATGATATTTGAATTAATTA
*
63016454 ATTTATG-TAATTTTAATTAATT
1 ATTTATGAT-ATTTGAATTAATT
63016476 TTTGTTTTAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 1 0.05
23 18 0.95
ACGTcount: A:0.36, C:0.02, G:0.07, T:0.56
Consensus pattern (23 bp):
ATTTATGATATTTGAATTAATTA
Found at i:63017414 original size:7 final size:7
Alignment explanation
Indices: 63017402--63017434 Score: 66
Period size: 7 Copynumber: 4.7 Consensus size: 7
63017392 TAGTTGTTTC
63017402 GTATTTA
1 GTATTTA
63017409 GTATTTA
1 GTATTTA
63017416 GTATTTA
1 GTATTTA
63017423 GTATTTA
1 GTATTTA
63017430 GTATT
1 GTATT
63017435 ATGTATATAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 26 1.00
ACGTcount: A:0.27, C:0.00, G:0.15, T:0.58
Consensus pattern (7 bp):
GTATTTA
Found at i:63018044 original size:18 final size:18
Alignment explanation
Indices: 63018021--63018058 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
63018011 TGTTAGGTGC
*
63018021 GTATCCTAGCCCTTATAT
1 GTATCCTAACCCTTATAT
63018039 GTATCCTAACCCTTATAT
1 GTATCCTAACCCTTATAT
63018057 GT
1 GT
63018059 TTCATTTTCC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.24, C:0.26, G:0.11, T:0.39
Consensus pattern (18 bp):
GTATCCTAACCCTTATAT
Found at i:63021762 original size:126 final size:126
Alignment explanation
Indices: 63021532--63022040 Score: 761
Period size: 126 Copynumber: 4.0 Consensus size: 126
63021522 TTATAGCCTC
* *
63021532 ATTTTTCTACGAACTACTGTAGCAAAAGAGTGTCCACGTGGGAAC-TTTTTTAGAAATTTTACTG
1 ATTTTTCTACGAACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTTTTTTAGAAATTTTACTG
**
63021596 ACAGTACATCCTGCTTGAAGCGTTTTTGACACTATTTGTTCAGAAACGTCTACTCAGAATT
66 ACAGTACATCCTGCTTGAAGCGTTTTCAACACTATTTGTTCAGAAACGTCTACTCAGAATT
* * * *
63021657 ATTTTTCTACAAACTACTGTAGTAAAAGAGCGTCCACGTGGGAGCTTTTTTTAGAAAATTTGCTG
1 ATTTTTCTACGAACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTTTTTTAGAAATTTTACTG
* * * *
63021722 ACAGTGCATCTTGCTTGAAGCGTTTTCAACACTATTTGTTCAAAAATGTCTACTCAGAATT
66 ACAGTACATCCTGCTTGAAGCGTTTTCAACACTATTTGTTCAGAAACGTCTACTCAGAATT
*
63021783 ATTTTTTTACGAACTACTGTAGCAAAAGAGCGTCCACGTGGGAG-TTTTTTTCAGAAATTTTACT
1 ATTTTTCTACGAACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTTTTTT-AGAAATTTTACT
* *
63021847 GACAGTGCATCCTGCTTGAAGCGTTTTCGACACTATTTGTTCAGAAACGTCTACTCAGAATT
65 GACAGTACATCCTGCTTGAAGCGTTTTCAACACTATTTGTTCAGAAACGTCTACTCAGAATT
* * * * * *
63021909 ATTTTTCTACTAACTACTGTAGCAAAATAACATCCACGTGGGAGCTTTTTTCAGAAATTTTGCTG
1 ATTTTTCTACGAACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTTTTTTAGAAATTTTACTG
* * * * *
63021974 ACAGTACATCCTGCTTGAAGTGTTTTTAACCCTATTTGTTCAGAAACGTCAACTCAAAATT
66 ACAGTACATCCTGCTTGAAGCGTTTTCAACACTATTTGTTCAGAAACGTCTACTCAGAATT
63022035 ATTTTT
1 ATTTTT
63022041 GCAGAAACCC
Statistics
Matches: 346, Mismatches: 35, Indels: 5
0.90 0.09 0.01
Matches are distributed among these distances:
125 48 0.14
126 292 0.84
127 6 0.02
ACGTcount: A:0.29, C:0.18, G:0.17, T:0.36
Consensus pattern (126 bp):
ATTTTTCTACGAACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTTTTTTAGAAATTTTACTG
ACAGTACATCCTGCTTGAAGCGTTTTCAACACTATTTGTTCAGAAACGTCTACTCAGAATT
Found at i:63022598 original size:19 final size:19
Alignment explanation
Indices: 63022576--63022645 Score: 110
Period size: 19 Copynumber: 3.8 Consensus size: 19
63022566 ACAATTATGT
*
63022576 ATCAATTAACCCTAAATTA
1 ATCAATTAACCCTAATTTA
63022595 ATCAATTAACCCTAATTTA
1 ATCAATTAACCCTAATTTA
63022614 ATCAA-T--CCCTAATTTA
1 ATCAATTAACCCTAATTTA
63022630 ATCAATTAACCCTAAT
1 ATCAATTAACCCTAAT
63022646 ACCTTAAACT
Statistics
Matches: 47, Mismatches: 1, Indels: 6
0.87 0.02 0.11
Matches are distributed among these distances:
16 15 0.32
17 1 0.02
18 1 0.02
19 30 0.64
ACGTcount: A:0.43, C:0.23, G:0.00, T:0.34
Consensus pattern (19 bp):
ATCAATTAACCCTAATTTA
Found at i:63024377 original size:13 final size:15
Alignment explanation
Indices: 63024341--63024375 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
63024331 ATTTAAAATT
63024341 TTAAAAATATAATAA
1 TTAAAAATATAATAA
*
63024356 TTAAAAATATCA-AA
1 TTAAAAATATAATAA
63024370 TTAAAA
1 TTAAAA
63024376 TACATAAAGT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 8 0.42
15 11 0.58
ACGTcount: A:0.66, C:0.03, G:0.00, T:0.31
Consensus pattern (15 bp):
TTAAAAATATAATAA
Found at i:63025351 original size:19 final size:19
Alignment explanation
Indices: 63025327--63025369 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
63025317 TTGAATTACT
*
63025327 TTTTTA-TATACTAAATTCA
1 TTTTTACTAAACTAAATT-A
*
63025346 TTTTTACTAAACTTAATTA
1 TTTTTACTAAACTAAATTA
63025365 TTTTT
1 TTTTT
63025370 CAAATAATGT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 12 0.57
20 9 0.43
ACGTcount: A:0.33, C:0.09, G:0.00, T:0.58
Consensus pattern (19 bp):
TTTTTACTAAACTAAATTA
Found at i:63028260 original size:30 final size:30
Alignment explanation
Indices: 63028224--63028281 Score: 100
Period size: 30 Copynumber: 1.9 Consensus size: 30
63028214 AGGTACAATC
63028224 TGATGATAATGG-AAAATAATGTTATGAATG
1 TGATGATAATGGAAAAAT-ATGTTATGAATG
63028254 TGATGATAATGGAAAAATATGTTATGAA
1 TGATGATAATGGAAAAATATGTTATGAA
63028282 ACATGTGGAG
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
30 22 0.81
31 5 0.19
ACGTcount: A:0.45, C:0.00, G:0.22, T:0.33
Consensus pattern (30 bp):
TGATGATAATGGAAAAATATGTTATGAATG
Found at i:63030816 original size:19 final size:19
Alignment explanation
Indices: 63030792--63030835 Score: 70
Period size: 19 Copynumber: 2.3 Consensus size: 19
63030782 TAAGTTGTGG
63030792 ATTTAGCCCTTATATTTTA
1 ATTTAGCCCTTATATTTTA
* *
63030811 ATTTAGTCTTTATATTTTA
1 ATTTAGCCCTTATATTTTA
63030830 ATTTAG
1 ATTTAG
63030836 TCATTTTCGA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.27, C:0.09, G:0.07, T:0.57
Consensus pattern (19 bp):
ATTTAGCCCTTATATTTTA
Found at i:63030836 original size:19 final size:19
Alignment explanation
Indices: 63030801--63030837 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
63030791 GATTTAGCCC
63030801 TTATATTTTAATTTAGTCT
1 TTATATTTTAATTTAGTCT
63030820 TTATATTTTAATTTAGTC
1 TTATATTTTAATTTAGTC
63030838 ATTTTCGATC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.27, C:0.05, G:0.05, T:0.62
Consensus pattern (19 bp):
TTATATTTTAATTTAGTCT
Found at i:63043134 original size:37 final size:37
Alignment explanation
Indices: 63043059--63043134 Score: 107
Period size: 37 Copynumber: 2.1 Consensus size: 37
63043049 TTATTACGAA
* * *
63043059 GTCTTACCCGGACATAATCTCCACACGAAGTTAGCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCAGCGG
* *
63043096 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCAGCGG
63043133 GT
1 GT
63043135 GTTTAGAGCT
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
37 34 1.00
ACGTcount: A:0.26, C:0.32, G:0.21, T:0.21
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCAGCGG
Found at i:63043334 original size:47 final size:47
Alignment explanation
Indices: 63043256--63043431 Score: 289
Period size: 47 Copynumber: 3.7 Consensus size: 47
63043246 CCCTTCGGGA
* ** * *
63043256 CTTATCACATTTATACACTTTCACACCCATCACATCGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
63043303 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
63043350 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
63043397 CTTATCACATATATACACTTTCACATTCATCACAT
1 CTTATCACATATATACACTTTCACATTCATCACAT
63043432 AGAATCCTAA
Statistics
Matches: 120, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 120 1.00
ACGTcount: A:0.29, C:0.32, G:0.07, T:0.31
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:63048894 original size:16 final size:16
Alignment explanation
Indices: 63048875--63048905 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
63048865 CTTCTTCACT
63048875 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
63048891 TACTTACTTACTTAA
1 TACTCACTTACTTAA
63048906 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:63048911 original size:20 final size:20
Alignment explanation
Indices: 63048872--63048911 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
63048862 AAACTTCTTC
* *
63048872 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
63048892 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
63048912 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:63049231 original size:53 final size:54
Alignment explanation
Indices: 63049102--63049355 Score: 229
Period size: 53 Copynumber: 4.8 Consensus size: 54
63049092 ACACGGGCAC
* * * * *
63049102 CTTACCATTGCCATGACTTGTCATGGTCTTACGTGGTA---TT--CTTTTGAAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA
* *
63049151 CTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATG-AA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA
* * * * * *
63049204 CTCACCAACGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCATTATAGTAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCC-TTGCCTTAT-GAAA
* * * *
63049259 CTTATCAATGCCATGTCTTGACATGGTCTTACATGAT-TTCTTGCCTTA-GAAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA
* * *
63049311 CCTTACCAATTTCCATGCCTTGGCATGGTCTTACACGGTATCCTT
1 -CTTACCAA-TGCCATGCCTTGACATGGTCTTACATGGTATCCTT
63049356 AAACCCTAAT
Statistics
Matches: 165, Mismatches: 28, Indels: 18
0.78 0.13 0.09
Matches are distributed among these distances:
49 35 0.21
52 7 0.04
53 49 0.30
54 37 0.22
55 37 0.22
ACGTcount: A:0.22, C:0.25, G:0.17, T:0.36
Consensus pattern (54 bp):
CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA
Found at i:63049319 original size:108 final size:109
Alignment explanation
Indices: 63049149--63049345 Score: 292
Period size: 108 Copynumber: 1.8 Consensus size: 109
63049139 ATTCTTTTGA
* *
63049149 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAACTCACCAA-C
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTATGAACTCACCAATC
63049213 GCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCATTATAGT
66 GCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCATTATAGT
* * *
63049257 AACTTATCAATGCCATGTCTTGACATGGTCTTACATGAT-TTCTTGCCTTA-GAAACCTTACCAA
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTATG-AA-CTCACCAA
**
63049320 TTTCCATGCCTTGGCATGGTCTTACA
64 TCGCCATGCCTTGGCATGGTCTTACA
63049346 CGGTATCCTT
Statistics
Matches: 79, Mismatches: 7, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
106 1 0.01
107 12 0.15
108 43 0.54
109 23 0.29
ACGTcount: A:0.23, C:0.25, G:0.17, T:0.35
Consensus pattern (109 bp):
AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTATGAACTCACCAATC
GCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCATTATAGT
Found at i:63051460 original size:23 final size:22
Alignment explanation
Indices: 63051424--63051534 Score: 93
Period size: 23 Copynumber: 4.9 Consensus size: 22
63051414 TGATGAACAG
* *
63051424 TAAGCTCTATTGAGCTGAAATGA
1 TAAGCTCCA-TGAGCTGAAACGA
*
63051447 TAAGCTCCACTGAGCTGAAACGG
1 TAAGCTCCA-TGAGCTGAAACGA
*
63051470 TAAGCTCTATCGAGCT-AAAC-A
1 TAAGCTCCAT-GAGCTGAAACGA
*
63051491 GTAAGCT-CATAAGAGCTGAAACGG
1 -TAAGCTCCAT--GAGCTGAAACGA
63051515 TAAGCTCCAATGAGCTGAAA
1 TAAGCTCC-ATGAGCTGAAA
63051535 ATAGTAAGCT
Statistics
Matches: 72, Mismatches: 9, Indels: 14
0.76 0.09 0.15
Matches are distributed among these distances:
21 2 0.03
22 16 0.22
23 51 0.71
24 1 0.01
25 2 0.03
ACGTcount: A:0.36, C:0.20, G:0.23, T:0.22
Consensus pattern (22 bp):
TAAGCTCCATGAGCTGAAACGA
Found at i:63051530 original size:45 final size:46
Alignment explanation
Indices: 63051458--63051545 Score: 126
Period size: 45 Copynumber: 1.9 Consensus size: 46
63051448 AAGCTCCACT
*
63051458 GAGCTGAAACGGTAAGCTCTATCGAGCT-AAACAGTAAGCTCATAA
1 GAGCTGAAACGGTAAGCTCAATCGAGCTAAAACAGTAAGCTCATAA
*
63051503 GAGCTGAAACGGTAAGCTCCAAT-GAGCTGAAAATAGTAAGCTC
1 GAGCTGAAACGGTAAGCT-CAATCGAGCT-AAAACAGTAAGCTC
63051546 TTTCGATCTG
Statistics
Matches: 38, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
45 23 0.61
46 3 0.08
47 12 0.32
ACGTcount: A:0.38, C:0.19, G:0.24, T:0.19
Consensus pattern (46 bp):
GAGCTGAAACGGTAAGCTCAATCGAGCTAAAACAGTAAGCTCATAA
Found at i:63058795 original size:28 final size:27
Alignment explanation
Indices: 63058709--63058798 Score: 83
Period size: 27 Copynumber: 3.2 Consensus size: 27
63058699 GTGACAGAGT
* *
63058709 CACCAGATACAGATATTTTGTGGTAGTGC
1 CACCAGA-ACAGATAATTTGTGGCA-TGC
* ** *
63058738 CACCAGAACAAAT-ATACGTGGCAGGGC
1 CACCAGAACAGATAATTTGTGGCA-TGC
63058765 CACCAGAACAGATAATTTGTGGCATAGC
1 CACCAGAACAGATAATTTGTGGCAT-GC
63058793 CACCAG
1 CACCAG
63058799 GACGCTTCCT
Statistics
Matches: 49, Mismatches: 10, Indels: 5
0.77 0.16 0.08
Matches are distributed among these distances:
27 21 0.43
28 21 0.43
29 7 0.14
ACGTcount: A:0.33, C:0.23, G:0.23, T:0.20
Consensus pattern (27 bp):
CACCAGAACAGATAATTTGTGGCATGC
Found at i:63058951 original size:28 final size:28
Alignment explanation
Indices: 63058920--63058995 Score: 143
Period size: 28 Copynumber: 2.7 Consensus size: 28
63058910 TATAGAGGTT
63058920 ATTTTGCATACATAGGGGTATAATGGTA
1 ATTTTGCATACATAGGGGTATAATGGTA
*
63058948 ATTTTGCATACATAGGGGTATGATGGTA
1 ATTTTGCATACATAGGGGTATAATGGTA
63058976 ATTTTGCATACATAGGGGTA
1 ATTTTGCATACATAGGGGTA
63058996 CTCTAGTACA
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
28 47 1.00
ACGTcount: A:0.30, C:0.08, G:0.26, T:0.36
Consensus pattern (28 bp):
ATTTTGCATACATAGGGGTATAATGGTA
Found at i:63070224 original size:5 final size:5
Alignment explanation
Indices: 63070214--63070256 Score: 50
Period size: 5 Copynumber: 8.4 Consensus size: 5
63070204 CCTAGGATGC
* * *
63070214 GAATT GAATT GAATT GAATT GATTAT GAATT GTATT AAATT GA
1 GAATT GAATT GAATT GAATT GAAT-T GAATT GAATT GAATT GA
63070257 GTTAAATTTA
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
5 27 0.87
6 4 0.13
ACGTcount: A:0.40, C:0.00, G:0.19, T:0.42
Consensus pattern (5 bp):
GAATT
Found at i:63073653 original size:15 final size:16
Alignment explanation
Indices: 63073633--63073662 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
63073623 GAAAATTGCC
63073633 AAAATGGG-CTAAATA
1 AAAATGGGACTAAATA
63073648 AAAATGGGACTAAAT
1 AAAATGGGACTAAAT
63073663 TGGAATATCT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.53, C:0.07, G:0.20, T:0.20
Consensus pattern (16 bp):
AAAATGGGACTAAATA
Found at i:63080317 original size:22 final size:22
Alignment explanation
Indices: 63080292--63080338 Score: 94
Period size: 22 Copynumber: 2.1 Consensus size: 22
63080282 TTTAAATTAT
63080292 GTTAGACAACTTGTGCTACTCG
1 GTTAGACAACTTGTGCTACTCG
63080314 GTTAGACAACTTGTGCTACTCG
1 GTTAGACAACTTGTGCTACTCG
63080336 GTT
1 GTT
63080339 TCGAGTGAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.21, C:0.21, G:0.23, T:0.34
Consensus pattern (22 bp):
GTTAGACAACTTGTGCTACTCG
Found at i:63081366 original size:64 final size:64
Alignment explanation
Indices: 63081261--63081468 Score: 206
Period size: 67 Copynumber: 3.2 Consensus size: 64
63081251 CATCATGTGT
* *
63081261 ACAAGAGAGCTACAAGACATTATAATGTAGCTAGGTCGCATGGGTGATACCATGTGTACACCATG
1 ACAAGAGAGCTAC--GAGA-TA-AATGTAGCTAGGTCGCATGGGTGGTACCATGTGTACACCATG
63081326 TAG
62 TAG
* * * * * *
63081329 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGAGATAAATGTAGCTAGGTCGCATGGGTGGTACC-A-TG-TGTACACCATGT
63081394 AG
63 AG
* * * *
63081396 ACAAGAGAGCTACGAGATAAAT-TGGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGT-G
1 ACAAGAGAGCTACGAGATAAATGTAGCTAGGTCGCATGGGTGGTAC-CATGTGTACACCATGTAG
63081458 TACAAGAGAGC
1 -ACAAGAGAGC
63081469 CGAACTATAT
Statistics
Matches: 117, Mismatches: 18, Indels: 15
0.78 0.12 0.10
Matches are distributed among these distances:
62 1 0.01
63 19 0.16
64 25 0.21
65 3 0.03
66 24 0.21
67 32 0.27
68 13 0.11
ACGTcount: A:0.32, C:0.17, G:0.29, T:0.22
Consensus pattern (64 bp):
ACAAGAGAGCTACGAGATAAATGTAGCTAGGTCGCATGGGTGGTACCATGTGTACACCATGTAG
Found at i:63084928 original size:79 final size:81
Alignment explanation
Indices: 63084792--63084976 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
63084782 TTGAATGATG
* *
63084792 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
63084856 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
63084871 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
63084933 ATTGTGCGAGTTACTATA
64 ATTGTGCGAGATACTATA
* *
63084951 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
63084977 AACGAGTAGC
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 57 0.63
80 33 0.36
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
TGTGCGAGATACTATA
Found at i:63084990 original size:40 final size:40
Alignment explanation
Indices: 63084793--63084976 Score: 207
Period size: 40 Copynumber: 4.6 Consensus size: 40
63084783 TGAATGATGT
* * * *
63084793 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
63084833 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
63084873 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
* *
63084911 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
63084952 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
63084977 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 13, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
39 35 0.28
40 79 0.64
41 10 0.08
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:63084998 original size:79 final size:79
Alignment explanation
Indices: 63084845--63085009 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
63084835 GGACTAAGAT
* * **
63084845 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
63084910 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
63084924 CCGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCAATTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
63084987 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
63085003 CCGAAGG
1 CCGAAGG
63085010 TACGTGATTT
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 47 0.64
80 25 0.34
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:63088098 original size:43 final size:42
Alignment explanation
Indices: 63088050--63088200 Score: 171
Period size: 43 Copynumber: 3.5 Consensus size: 42
63088040 TATTAACAAG
*
63088050 ATGTGATTACGTGTAAGACCATGCCTGGGACATTGGCATCATT
1 ATGTGATTACGTGTAAGACCATG-CTGGGACATTGACATCATT
* *
63088093 ATGTGATTACGTGTAAGATCATGTTTGGGACATTGACATCATT
1 ATGTGATTACGTGTAAGACCATG-CTGGGACATTGACATCATT
* * *
63088136 ATTTGATTTCGTGTAAGACCATAGCTGGG-CTATCGACATCGA-T
1 ATGTGATTACGTGTAAGACCAT-GCTGGGAC-ATTGACATC-ATT
* *
63088179 ATGTGATAACATGTAAGACCAT
1 ATGTGATTACGTGTAAGACCAT
63088201 ATCTGGGATA
Statistics
Matches: 92, Mismatches: 13, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
42 1 0.01
43 89 0.97
44 2 0.02
ACGTcount: A:0.28, C:0.16, G:0.23, T:0.32
Consensus pattern (42 bp):
ATGTGATTACGTGTAAGACCATGCTGGGACATTGACATCATT
Found at i:63095856 original size:20 final size:20
Alignment explanation
Indices: 63095828--63095877 Score: 91
Period size: 20 Copynumber: 2.5 Consensus size: 20
63095818 GAGGTCACAC
*
63095828 GCCCATGTGGCTTGGGACAT
1 GCCCGTGTGGCTTGGGACAT
63095848 GCCCGTGTGGCTTGGGACAT
1 GCCCGTGTGGCTTGGGACAT
63095868 GCCCGTGTGG
1 GCCCGTGTGG
63095878 GTAGTCCGTG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.10, C:0.26, G:0.40, T:0.24
Consensus pattern (20 bp):
GCCCGTGTGGCTTGGGACAT
Found at i:63097235 original size:23 final size:23
Alignment explanation
Indices: 63097205--63097251 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
63097195 AATACCATGA
63097205 AGTCAATGCTTATAAACTTATGT
1 AGTCAATGCTTATAAACTTATGT
63097228 AGTCAATGCTTATAAACTTATGT
1 AGTCAATGCTTATAAACTTATGT
63097251 A
1 A
63097252 CATACCTGTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.36, C:0.13, G:0.13, T:0.38
Consensus pattern (23 bp):
AGTCAATGCTTATAAACTTATGT
Found at i:63097441 original size:43 final size:42
Alignment explanation
Indices: 63097372--63097498 Score: 148
Period size: 43 Copynumber: 3.0 Consensus size: 42
63097362 CACTCAGTAC
* *
63097372 CATATCAATGCCATATCCCAGATATGGTCTTACATGTAATCT
1 CATATCGATGCCATATCCCAGATATGGTCTTATATGTAATCT
* * * *
63097414 CGTATCGATGCCAATAGCCCAGCTATGGTCTTATACG-AAGTCT
1 CATATCGATGCC-ATATCCCAGATATGGTCTTATATGTAA-TCT
* * *
63097457 CATGTCGATGCCATATCCCAGATATTGTTTTATATGTAATCT
1 CATATCGATGCCATATCCCAGATATGGTCTTATATGTAATCT
63097499 TAGTAACCCT
Statistics
Matches: 69, Mismatches: 13, Indels: 6
0.78 0.15 0.07
Matches are distributed among these distances:
42 34 0.49
43 35 0.51
ACGTcount: A:0.28, C:0.23, G:0.16, T:0.34
Consensus pattern (42 bp):
CATATCGATGCCATATCCCAGATATGGTCTTATATGTAATCT
Found at i:63105750 original size:27 final size:27
Alignment explanation
Indices: 63105650--63105759 Score: 114
Period size: 27 Copynumber: 4.1 Consensus size: 27
63105640 CCCTTGATTT
* * *
63105650 CCGAGATACCCCTGTAGGATAGAACTA
1 CCGAAATACCCTTGTAGGATAGAATTA
* *
63105677 TCGAAATACCCTTGTAGGATAGAAATA
1 CCGAAATACCCTTGTAGGATAGAATTA
*
63105704 CCGAAATACCAC-TGTAGGGTAGAATTA
1 CCGAAATACC-CTTGTAGGATAGAATTA
* * * *
63105731 CCGAGATACCCTTGTGGGGTAAAATTA
1 CCGAAATACCCTTGTAGGATAGAATTA
63105758 CC
1 CC
63105760 ATTTTGCCCC
Statistics
Matches: 71, Mismatches: 10, Indels: 4
0.84 0.12 0.05
Matches are distributed among these distances:
26 1 0.01
27 69 0.97
28 1 0.01
ACGTcount: A:0.35, C:0.21, G:0.22, T:0.23
Consensus pattern (27 bp):
CCGAAATACCCTTGTAGGATAGAATTA
Found at i:63106456 original size:27 final size:26
Alignment explanation
Indices: 63106412--63106463 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
63106402 CTCGCTGTAA
*
63106412 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
63106439 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
63106464 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:63109611 original size:54 final size:54
Alignment explanation
Indices: 63109497--63109603 Score: 142
Period size: 54 Copynumber: 2.0 Consensus size: 54
63109487 ATCCGTGGAC
* * ** *
63109497 CATTTGGTGTTATCAGAGCTACGATTTAGTCAGTTCTCGGGTAAGGGGGTGTTA
1 CATTTGGTGGTATCAGAGCTACGATTTAGTCAGTTCTCGGCTAACAGGGCGTTA
* *
63109551 CATTTGGTGGTATCAGAGCTACGGTTTAGTCAGTTCTCGGACTAACATGGCGT
1 CATTTGGTGGTATCAGAGCTACGATTTAGTCAGTTCTCGG-CTAACAGGGCGT
63109604 ATGTTTGGGT
Statistics
Matches: 45, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
54 38 0.84
55 7 0.16
ACGTcount: A:0.21, C:0.16, G:0.30, T:0.34
Consensus pattern (54 bp):
CATTTGGTGGTATCAGAGCTACGATTTAGTCAGTTCTCGGCTAACAGGGCGTTA
Found at i:63112140 original size:42 final size:43
Alignment explanation
Indices: 63112083--63112164 Score: 105
Period size: 42 Copynumber: 1.9 Consensus size: 43
63112073 TAGGACCATG
** * *
63112083 TCTGGGACATCGGCATCG-TATCTG-ATTTCGTGTAAGACCCTA
1 TCTGGGACAGAGGCATCGATAT-TGAATTACATGTAAGACCCTA
63112125 TCTGGGACAGAGGCATCGATATTGAATTACATGTAAGACC
1 TCTGGGACAGAGGCATCGATATTGAATTACATGTAAGACC
63112165 ACGTCCGGGA
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
42 18 0.53
43 16 0.47
ACGTcount: A:0.27, C:0.21, G:0.24, T:0.28
Consensus pattern (43 bp):
TCTGGGACAGAGGCATCGATATTGAATTACATGTAAGACCCTA
Found at i:63115117 original size:40 final size:40
Alignment explanation
Indices: 63115039--63115379 Score: 472
Period size: 40 Copynumber: 8.6 Consensus size: 40
63115029 ACCCAAGTAT
* *
63115039 CTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* **
63115078 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCATGAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
63115118 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* * *
63115158 C-TCTGGGACTTAGCCCAGATATAGTAACTTGCACAAATGC
1 CTTC-GGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* * * *
63115198 CTTCGAGACTTAGCCCAGATATAGTAACTTGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* **
63115238 CTTCGGGACTTAGCCCGAATATAGTCACTAGCATGAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
63115278 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* * * *
63115318 CTTCGGGACATAGCCCAGATATAGTAACTTGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
63115358 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
63115380 CATCCGAATA
Statistics
Matches: 270, Mismatches: 28, Indels: 7
0.89 0.09 0.02
Matches are distributed among these distances:
39 13 0.05
40 254 0.94
41 3 0.01
ACGTcount: A:0.28, C:0.26, G:0.22, T:0.24
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:63119701 original size:40 final size:40
Alignment explanation
Indices: 63119630--63119916 Score: 371
Period size: 40 Copynumber: 7.2 Consensus size: 40
63119620 CAGAATTTAG
* * * *
63119630 CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAAC
* * * * *
63119670 CCGGGT-ATAGCAACTCGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATAAAATC-ACTAGCACAAATGCCTTCGGGTCTTAAC
* * *
63119710 CCGGAT-ATATCAACTCGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATAAAATC-ACTAGCACAAATGCCTTCGGGTCTTAAC
*
63119750 CCGGATAAAATCACTAGCACAAATGCCTTCAGGTCTTAAC
1 CCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAAC
* *
63119790 TCGGATAAAATCACTAGCATAAATGCCTTCGGGTCTTAAC
1 CCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAAC
* *
63119830 CCGGATAAAGTCACTAGCATAAATGCCTTCGGGTCTTAAC
1 CCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAAC
* *
63119870 CCGGATAAAATCACTAGCACAAATGCCTTCGGGACTTAGC
1 CCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAAC
63119910 CCGGATA
1 CCGGATA
63119917 TTATTCAAAT
Statistics
Matches: 222, Mismatches: 23, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 2 0.01
40 216 0.97
41 4 0.02
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.23
Consensus pattern (40 bp):
CCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAAC
Found at i:63143525 original size:27 final size:26
Alignment explanation
Indices: 63143494--63143671 Score: 169
Period size: 27 Copynumber: 6.6 Consensus size: 26
63143484 TAAATTGTAC
63143494 AGCACTAAGTGTGCGATTCGACTATGT
1 AGCACTAAGTGTGCGATT-GACTATGT
* * *
63143521 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCG-ATTGACTATGT
* *
63143547 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCG-ATTGACTATGT
*
63143575 GGCACTAAGTGTGCGAGTCTGACTATGT
1 AGCACTAAGTGTGCGA-T-TGACTATGT
* *
63143603 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGA-TTGACTATGT
* *
63143630 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGA-TTGACTATGT
* *
63143657 AGCATTGAGTGTGCG
1 AGCACTAAGTGTGCG
63143672 GGCTCAATAT
Statistics
Matches: 127, Mismatches: 19, Indels: 10
0.81 0.12 0.06
Matches are distributed among these distances:
26 1 0.01
27 101 0.80
28 25 0.20
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (26 bp):
AGCACTAAGTGTGCGATTGACTATGT
Found at i:63143610 original size:82 final size:81
Alignment explanation
Indices: 63143495--63143650 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
63143485 AAATTGTACA
* * *
63143495 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
63143559 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
63143576 GCACTAAGTGTGCGAGTCTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGAGTC-GACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
63143641 TGCGAGTTGA
65 TGCGAATTGA
63143651 TTATATAGCA
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 17 0.26
82 48 0.73
83 1 0.02
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (81 bp):
GCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:63149600 original size:21 final size:21
Alignment explanation
Indices: 63149543--63149601 Score: 75
Period size: 21 Copynumber: 2.8 Consensus size: 21
63149533 ACATGACCTA
*
63149543 TTCACACGGCCATGTCCCTGC
1 TTCACACGGCCATGTGCCTGC
*
63149564 TTCACACGGGCATGTGCCT-C
1 TTCACACGGCCATGTGCCTGC
*
63149584 TATCACATGGCCATGTGC
1 T-TCACACGGCCATGTGC
63149602 TACCCTTCAC
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
20 2 0.06
21 31 0.94
ACGTcount: A:0.17, C:0.36, G:0.22, T:0.25
Consensus pattern (21 bp):
TTCACACGGCCATGTGCCTGC
Found at i:63161131 original size:33 final size:33
Alignment explanation
Indices: 63161089--63161159 Score: 142
Period size: 33 Copynumber: 2.2 Consensus size: 33
63161079 ATAATCTTAA
63161089 ATGTAAATACATGGTAAGTTAAATTCCTATTAT
1 ATGTAAATACATGGTAAGTTAAATTCCTATTAT
63161122 ATGTAAATACATGGTAAGTTAAATTCCTATTAT
1 ATGTAAATACATGGTAAGTTAAATTCCTATTAT
63161155 ATGTA
1 ATGTA
63161160 CTTACTAAGC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 38 1.00
ACGTcount: A:0.39, C:0.08, G:0.13, T:0.39
Consensus pattern (33 bp):
ATGTAAATACATGGTAAGTTAAATTCCTATTAT
Found at i:63164239 original size:43 final size:43
Alignment explanation
Indices: 63164094--63164240 Score: 188
Period size: 43 Copynumber: 3.4 Consensus size: 43
63164084 GGCCCGATAT
* * * *
63164094 CGAAAGCCCGAATAGTATC-TCACCGGCATTATAGCATGCTAGGCT
1 CGAAGGCCCGAATA-TA-CATCACCGGCA-CAAAGCATGCTAGGCA
* * *
63164139 CAAAGGCCCGAATACACATCACCGGCACAAAGCCTGCTAGGCA
1 CGAAGGCCCGAATATACATCACCGGCACAAAGCATGCTAGGCA
*
63164182 TGAAGGCCCGAATATACATCACCGGCACAAAGCATGCTAGGCA
1 CGAAGGCCCGAATATACATCACCGGCACAAAGCATGCTAGGCA
63164225 CGAAGGCCCGAATATA
1 CGAAGGCCCGAATATA
63164241 ATACCAGCAC
Statistics
Matches: 89, Mismatches: 12, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
43 67 0.75
44 10 0.11
45 12 0.13
ACGTcount: A:0.33, C:0.29, G:0.22, T:0.15
Consensus pattern (43 bp):
CGAAGGCCCGAATATACATCACCGGCACAAAGCATGCTAGGCA
Done.