Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100714657
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 3970000 characters in sequence are not A, C, G, or T
File 201 of 318
Found at i:63485029 original size:9 final size:9
Alignment explanation
Indices: 63485015--63485082 Score: 57
Period size: 9 Copynumber: 7.6 Consensus size: 9
63485005 TTTATACAAA
*
63485015 TAATTCTGT
1 TAATTCGGT
*
63485024 TAATTCGGG
1 TAATTCGGT
*
63485033 TAATTCGGG
1 TAATTCGGT
*
63485042 TAATTTAGG-
1 TAA-TTCGGT
63485051 TAATTCGGT
1 TAATTCGGT
* **
63485060 TAACTCTAT
1 TAATTCGGT
63485069 TAATTCGGT
1 TAATTCGGT
63485078 TAATT
1 TAATT
63485083 TTATACTAAT
Statistics
Matches: 47, Mismatches: 10, Indels: 4
0.77 0.16 0.07
Matches are distributed among these distances:
8 4 0.09
9 39 0.83
10 4 0.09
ACGTcount: A:0.26, C:0.10, G:0.19, T:0.44
Consensus pattern (9 bp):
TAATTCGGT
Found at i:63485038 original size:18 final size:18
Alignment explanation
Indices: 63485015--63485082 Score: 66
Period size: 18 Copynumber: 3.8 Consensus size: 18
63485005 TTTATACAAA
* *
63485015 TAATTCTGTTAATTCGGG
1 TAATTCGGTTAATTCAGG
* *
63485033 TAATTCGGGTAATTTAGG
1 TAATTCGGTTAATTCAGG
* *
63485051 TAATTCGGTTAACTCTA-T
1 TAATTCGGTTAATTC-AGG
63485069 TAATTCGGTTAATT
1 TAATTCGGTTAATT
63485083 TTATACTAAT
Statistics
Matches: 40, Mismatches: 9, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
18 39 0.98
19 1 0.03
ACGTcount: A:0.26, C:0.10, G:0.19, T:0.44
Consensus pattern (18 bp):
TAATTCGGTTAATTCAGG
Found at i:63488604 original size:18 final size:19
Alignment explanation
Indices: 63488567--63488608 Score: 59
Period size: 18 Copynumber: 2.3 Consensus size: 19
63488557 ATATAAACTA
* *
63488567 TTATAATATTTTATTTTTT
1 TTATAATATTATAATTTTT
63488586 TTATAA-ATTATAATTTTT
1 TTATAATATTATAATTTTT
63488604 TTATA
1 TTATA
63488609 GATTTTGTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 15 0.71
19 6 0.29
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (19 bp):
TTATAATATTATAATTTTT
Found at i:63495093 original size:21 final size:21
Alignment explanation
Indices: 63495069--63495113 Score: 72
Period size: 21 Copynumber: 2.1 Consensus size: 21
63495059 TTCAACATAA
*
63495069 AAAATGTTCATACTAAGAATT
1 AAAATGTTCACACTAAGAATT
*
63495090 AAAATGTTCACACTAAGCATT
1 AAAATGTTCACACTAAGAATT
63495111 AAA
1 AAA
63495114 TCAAATTCAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.49, C:0.13, G:0.09, T:0.29
Consensus pattern (21 bp):
AAAATGTTCACACTAAGAATT
Found at i:63498718 original size:45 final size:44
Alignment explanation
Indices: 63498649--63498810 Score: 175
Period size: 45 Copynumber: 3.6 Consensus size: 44
63498639 TTCCAAAGGA
* * * * *
63498649 TGCCATGGTATCTTCCAACCATGGTCTTATGCATTCCTGATGTAG
1 TGCCATAGTATCTTTCAACTATGGTCTTAT-CATTCTTGATTTAG
* *
63498694 TGCCATAGTATCTTTCAACTATGGTCTTACACATT-TTCAGTTTAG
1 TGCCATAGTATCTTTCAACTATGGTCTTA-TCATTCTTGA-TTTAG
* *
63498739 TGCCATGGTATCTTTCAACTATGGTCTTACTCATTCTTG-TTTAA
1 TGCCATAGTATCTTTCAACTATGGTCTTA-TCATTCTTGATTTAG
* *
63498783 TGCCATAATATCTTTCAACTATGTTCTT
1 TGCCATAGTATCTTTCAACTATGGTCTT
63498811 TCTCATTTGG
Statistics
Matches: 100, Mismatches: 14, Indels: 7
0.83 0.12 0.06
Matches are distributed among these distances:
44 31 0.31
45 67 0.67
46 2 0.02
ACGTcount: A:0.22, C:0.22, G:0.14, T:0.42
Consensus pattern (44 bp):
TGCCATAGTATCTTTCAACTATGGTCTTATCATTCTTGATTTAG
Found at i:63498832 original size:89 final size:90
Alignment explanation
Indices: 63498648--63498855 Score: 240
Period size: 89 Copynumber: 2.3 Consensus size: 90
63498638 GTTCCAAAGG
* * * *
63498648 ATGCCATGGTATCTTCCAACCATGGTCTTATGCATTCCTGATGTAGTGCCATAGTATCTTTCAAC
1 ATGCCATGGTATCTTTCAACTATGGTCTTATGCATTCCTGATGTAATGCCATAATATCTTTCAAC
* **
63498713 TATGGTCTTACACATTTTCAGTTTA
66 TATGGTCTTACACATTTGCAGTAAA
* * *
63498738 GTGCCATGGTATCTTTCAACTATGGTCTTACT-CATTCTTG-TTTAATGCCATAATATCTTTCAA
1 ATGCCATGGTATCTTTCAACTATGGTCTTA-TGCATTCCTGATGTAATGCCATAATATCTTTCAA
* * * **
63498801 CTATGTTCTTTCTCATTTGGGGTAAA
65 CTATGGTCTTACACATTTGCAGTAAA
* *
63498827 ATGCCATGATATCTTTCAATTATGGTCTT
1 ATGCCATGGTATCTTTCAACTATGGTCTT
63498856 TCTCTTTTCT
Statistics
Matches: 99, Mismatches: 18, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
89 64 0.65
90 34 0.34
91 1 0.01
ACGTcount: A:0.23, C:0.20, G:0.15, T:0.42
Consensus pattern (90 bp):
ATGCCATGGTATCTTTCAACTATGGTCTTATGCATTCCTGATGTAATGCCATAATATCTTTCAAC
TATGGTCTTACACATTTGCAGTAAA
Found at i:63498845 original size:45 final size:44
Alignment explanation
Indices: 63498694--63498859 Score: 147
Period size: 45 Copynumber: 3.7 Consensus size: 44
63498684 CCTGATGTAG
* * * * ** *
63498694 TGCCAT-AGTATCTTTCAACTATGGTCTTACACATTTTCAGTTTAG
1 TGCCATGA-TATCTTTCAACTATGGTCTTTCTCATTCT-GGTAAAA
* * * **
63498739 TGCCATGGTATCTTTCAACTATGGTCTTACTCATTCTTGTTTAA
1 TGCCATGATATCTTTCAACTATGGTCTTTCTCATTCTGGTAAAA
* *
63498783 TGCCATAATATCTTTCAACTATGTTCTTTCTCATT-TGGGGTAAAA
1 TGCCATGATATCTTTCAACTATGGTCTTTCTCATTCT--GGTAAAA
*
63498828 TGCCATGATATCTTTCAATTATGGTCTTTCTC
1 TGCCATGATATCTTTCAACTATGGTCTTTCTC
63498860 TTTTCTCAAT
Statistics
Matches: 103, Mismatches: 15, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
43 1 0.01
44 36 0.35
45 66 0.64
ACGTcount: A:0.23, C:0.20, G:0.13, T:0.44
Consensus pattern (44 bp):
TGCCATGATATCTTTCAACTATGGTCTTTCTCATTCTGGTAAAA
Found at i:63499176 original size:109 final size:109
Alignment explanation
Indices: 63499046--63499264 Score: 393
Period size: 109 Copynumber: 2.0 Consensus size: 109
63499036 GTTTCTTGAT
* *
63499046 CTAGATAATACATTTCATTCAATTAAACCATTCAAATAACTTAAAATAATTAACTCAAACTTATA
1 CTAGATAATAAATTTCATTCAATTAAACCATTCAAATAACTTAAAATAACTAACTCAAACTTATA
**
63499111 ACCCTTATCAATATAAATTTACAAAATTGTCCCCACATTTTAAC
66 ACCCTTATCAATATAAATTTACAAAATTACCCCCACATTTTAAC
63499155 CTAGATAATAAATTTCATTCAATTAAACCATTCAAATAACTTAAAATAACTAACTCAAACTTATA
1 CTAGATAATAAATTTCATTCAATTAAACCATTCAAATAACTTAAAATAACTAACTCAAACTTATA
*
63499220 ACCCTTATCAATATGAATTTACAAAATTACCCCCACATTTTAAC
66 ACCCTTATCAATATAAATTTACAAAATTACCCCCACATTTTAAC
63499264 C
1 C
63499265 ATTATGCAAT
Statistics
Matches: 105, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
109 105 1.00
ACGTcount: A:0.44, C:0.21, G:0.02, T:0.33
Consensus pattern (109 bp):
CTAGATAATAAATTTCATTCAATTAAACCATTCAAATAACTTAAAATAACTAACTCAAACTTATA
ACCCTTATCAATATAAATTTACAAAATTACCCCCACATTTTAAC
Found at i:63501149 original size:17 final size:16
Alignment explanation
Indices: 63501110--63501172 Score: 60
Period size: 17 Copynumber: 3.9 Consensus size: 16
63501100 ATTTTAAGAA
63501110 AATAT-ACA-ATAAAT
1 AATATAACATATAAAT
*
63501124 AATATAACATATAATT
1 AATATAACATATAAAT
63501140 AATAATAACATATAACAT
1 AAT-ATAACATATAA-AT
*
63501158 ATGTATAACAT-TAAA
1 A-ATATAACATATAAA
63501173 ATGAAAAAAT
Statistics
Matches: 41, Mismatches: 3, Indels: 8
0.79 0.06 0.15
Matches are distributed among these distances:
14 5 0.12
15 3 0.07
16 9 0.22
17 14 0.34
18 9 0.22
19 1 0.02
ACGTcount: A:0.59, C:0.08, G:0.02, T:0.32
Consensus pattern (16 bp):
AATATAACATATAAAT
Found at i:63502122 original size:25 final size:25
Alignment explanation
Indices: 63502093--63502144 Score: 104
Period size: 25 Copynumber: 2.1 Consensus size: 25
63502083 CTCTTGGCAC
63502093 AAAATCTCAATAAACCTGAAACAAT
1 AAAATCTCAATAAACCTGAAACAAT
63502118 AAAATCTCAATAAACCTGAAACAAT
1 AAAATCTCAATAAACCTGAAACAAT
63502143 AA
1 AA
63502145 CTCATGTAAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.58, C:0.19, G:0.04, T:0.19
Consensus pattern (25 bp):
AAAATCTCAATAAACCTGAAACAAT
Found at i:63504676 original size:30 final size:29
Alignment explanation
Indices: 63504633--63504693 Score: 104
Period size: 30 Copynumber: 2.1 Consensus size: 29
63504623 AAAGTAGCCG
63504633 AAGCTAGTTAAATCGCACACTTAGTGCCA
1 AAGCTAGTTAAATCGCACACTTAGTGCCA
*
63504662 AAGCTAGTTTAAATCGCACACTTAGTTCCA
1 AAGCTAG-TTAAATCGCACACTTAGTGCCA
63504692 AA
1 AA
63504694 ACTTTCGTTT
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
29 7 0.23
30 23 0.77
ACGTcount: A:0.36, C:0.23, G:0.15, T:0.26
Consensus pattern (29 bp):
AAGCTAGTTAAATCGCACACTTAGTGCCA
Found at i:63510848 original size:19 final size:19
Alignment explanation
Indices: 63510806--63510842 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
63510796 GAACAAAACT
* *
63510806 GAACTTATTCAGAATTTCA
1 GAACTTAATCAAAATTTCA
63510825 GAACTTAATCAAAATTTC
1 GAACTTAATCAAAATTTC
63510843 CAAACTGTTA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.41, C:0.16, G:0.08, T:0.35
Consensus pattern (19 bp):
GAACTTAATCAAAATTTCA
Found at i:63511935 original size:30 final size:29
Alignment explanation
Indices: 63511892--63511952 Score: 113
Period size: 30 Copynumber: 2.1 Consensus size: 29
63511882 CAAGTAGCTG
63511892 AAGCTAGTTAAATCGCACACTTAGTGCCA
1 AAGCTAGTTAAATCGCACACTTAGTGCCA
63511921 AAGCTAGTTTAAATCGCACACTTAGTGCCA
1 AAGCTAG-TTAAATCGCACACTTAGTGCCA
63511951 AA
1 AA
63511953 ATTTTCGTTT
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
29 7 0.23
30 24 0.77
ACGTcount: A:0.36, C:0.23, G:0.16, T:0.25
Consensus pattern (29 bp):
AAGCTAGTTAAATCGCACACTTAGTGCCA
Found at i:63517601 original size:18 final size:18
Alignment explanation
Indices: 63517578--63517620 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
63517568 GTTCAAGGTG
63517578 TAATTAATTTAAAATT-TT
1 TAATTAA-TTAAAATTGTT
*
63517596 TAATTAATTAAATTTGTT
1 TAATTAATTAAAATTGTT
63517614 TAATTAA
1 TAATTAA
63517621 AAACCTATTC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 7 0.30
18 16 0.70
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.53
Consensus pattern (18 bp):
TAATTAATTAAAATTGTT
Found at i:63518268 original size:3 final size:3
Alignment explanation
Indices: 63518262--63518327 Score: 132
Period size: 3 Copynumber: 22.0 Consensus size: 3
63518252 GTATTGTTTC
63518262 TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA
1 TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA
63518310 TCA TCA TCA TCA TCA TCA
1 TCA TCA TCA TCA TCA TCA
63518328 AGCTTCCGCA
Statistics
Matches: 63, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 63 1.00
ACGTcount: A:0.33, C:0.33, G:0.00, T:0.33
Consensus pattern (3 bp):
TCA
Found at i:63518992 original size:35 final size:36
Alignment explanation
Indices: 63518952--63519023 Score: 94
Period size: 36 Copynumber: 2.0 Consensus size: 36
63518942 TTTCGTATCG
63518952 TTAAAATAT-A-CTACAAATTTTTATTTTTTAAAATT
1 TTAAAATATAATCTACAAATTTTTA-TTTTTAAAATT
* * *
63518987 TTAAAATTTAATCTATATATTTTTATTTTTAAAATT
1 TTAAAATATAATCTACAAATTTTTATTTTTAAAATT
63519023 T
1 T
63519024 AATTATATTG
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
35 8 0.25
36 13 0.41
37 11 0.34
ACGTcount: A:0.40, C:0.04, G:0.00, T:0.56
Consensus pattern (36 bp):
TTAAAATATAATCTACAAATTTTTATTTTTAAAATT
Found at i:63519051 original size:29 final size:30
Alignment explanation
Indices: 63518976--63519055 Score: 105
Period size: 28 Copynumber: 2.8 Consensus size: 30
63518966 AAATTTTTAT
63518976 TTTTTAAAATTTTAAAATTTAATCTATATA
1 TTTTTAAAATTTTAAAATTTAATCTATATA
* *
63519006 TTTTT--ATTTTTAAAATTTAAT-TATATTG
1 TTTTTAAAATTTTAAAATTTAATCTATA-TA
63519034 TTTTTAAAATTTT-AAATTTAAT
1 TTTTTAAAATTTTAAAATTTAAT
63519056 GTAATTATTA
Statistics
Matches: 44, Mismatches: 3, Indels: 7
0.81 0.06 0.13
Matches are distributed among these distances:
27 4 0.09
28 21 0.48
29 9 0.20
30 10 0.23
ACGTcount: A:0.39, C:0.01, G:0.01, T:0.59
Consensus pattern (30 bp):
TTTTTAAAATTTTAAAATTTAATCTATATA
Found at i:63519084 original size:21 final size:21
Alignment explanation
Indices: 63519060--63519099 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
63519050 TTTAATGTAA
63519060 TTATT-AATATTATTAGTTTTT
1 TTATTGAAT-TTATTAGTTTTT
63519081 TTATTGAATTTATTAGTTT
1 TTATTGAATTTATTAGTTT
63519100 GATATTTTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 15 0.83
22 3 0.17
ACGTcount: A:0.28, C:0.00, G:0.07, T:0.65
Consensus pattern (21 bp):
TTATTGAATTTATTAGTTTTT
Found at i:63524362 original size:35 final size:35
Alignment explanation
Indices: 63524312--63524542 Score: 291
Period size: 35 Copynumber: 6.6 Consensus size: 35
63524302 TACCCCCTGT
* * *
63524312 TTGGCGTGTTTCGGTTGGATTATCTCTTAAGAGCA
1 TTGGCGTGTTACGGTTGGATTAGCTCTTATGAGCA
* *
63524347 TTGACGTGTTACGGTTTGATTAGCTCTTATGAGCA
1 TTGGCGTGTTACGGTTGGATTAGCTCTTATGAGCA
* * *
63524382 TTGGCATGTTACAGTTAGATTAGCTCTTATGAGCA
1 TTGGCGTGTTACGGTTGGATTAGCTCTTATGAGCA
*
63524417 TTGTCGTGTTACGGTTGGATTAGCTCTTATGAGCA
1 TTGGCGTGTTACGGTTGGATTAGCTCTTATGAGCA
* * * *
63524452 TTAGCATGTTATGGTTAGATTAGCTCTTATGAGCA
1 TTGGCGTGTTACGGTTGGATTAGCTCTTATGAGCA
* * *
63524487 TTGGCGTGTTTCGGTTGGGTTAGCTCTTATGAGTA
1 TTGGCGTGTTACGGTTGGATTAGCTCTTATGAGCA
* **
63524522 TCGGCGTGTTATAGTTGGATT
1 TTGGCGTGTTACGGTTGGATT
63524543 TACGATGTAC
Statistics
Matches: 166, Mismatches: 30, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
35 166 1.00
ACGTcount: A:0.19, C:0.13, G:0.28, T:0.40
Consensus pattern (35 bp):
TTGGCGTGTTACGGTTGGATTAGCTCTTATGAGCA
Found at i:63524456 original size:16 final size:16
Alignment explanation
Indices: 63524435--63524488 Score: 56
Period size: 16 Copynumber: 3.2 Consensus size: 16
63524425 TTACGGTTGG
63524435 ATTAGCTCTTATGAGC
1 ATTAGCTCTTATGAGC
*
63524451 ATTAGCATGTTATGGTTAG-
1 ATTAGC-TCTTAT-G--AGC
63524470 ATTAGCTCTTATGAGC
1 ATTAGCTCTTATGAGC
63524486 ATT
1 ATT
63524489 GGCGTGTTTC
Statistics
Matches: 31, Mismatches: 2, Indels: 10
0.72 0.05 0.23
Matches are distributed among these distances:
15 2 0.06
16 9 0.29
17 6 0.19
18 6 0.19
19 6 0.19
20 2 0.06
ACGTcount: A:0.26, C:0.13, G:0.20, T:0.41
Consensus pattern (16 bp):
ATTAGCTCTTATGAGC
Found at i:63527446 original size:22 final size:21
Alignment explanation
Indices: 63527421--63527461 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
63527411 AGGGCTAAAT
*
63527421 AAAAAACATATAGAATTTTTTG
1 AAAAAACATA-AAAATTTTTTG
*
63527443 AAAAAAGATAAAAATTTTT
1 AAAAAACATAAAAATTTTT
63527462 AACTTGCAGG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 8 0.47
22 9 0.53
ACGTcount: A:0.56, C:0.02, G:0.07, T:0.34
Consensus pattern (21 bp):
AAAAAACATAAAAATTTTTTG
Found at i:63529550 original size:37 final size:37
Alignment explanation
Indices: 63529500--63529578 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
63529490 TTATTACGAA
* * *
63529500 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
* *
63529537 GTCTTACCCGGACAAAATCCCCACGCGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
63529574 GTCTT
1 GTCTT
63529579 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.24, C:0.32, G:0.20, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:63529918 original size:49 final size:47
Alignment explanation
Indices: 63529697--63529932 Score: 382
Period size: 47 Copynumber: 5.0 Consensus size: 47
63529687 CCCTTCGGGA
* * * * * *
63529697 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
63529744 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
63529791 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
63529838 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
63529885 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGG
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGG
63529933 TGTGACAGCC
Statistics
Matches: 177, Mismatches: 10, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
47 139 0.79
49 38 0.21
ACGTcount: A:0.28, C:0.31, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:63530916 original size:40 final size:39
Alignment explanation
Indices: 63530833--63531054 Score: 193
Period size: 39 Copynumber: 5.6 Consensus size: 39
63530823 TTGAATGCTG
* * * *
63530833 TCCGGGCTAAGTCCGAAGGC-TTTGTGCTA-AGTGAATATA
1 TCCGGGTTAAGTCCGAAGGCATTTGTGCGAGA-T-ACTAAA
**
63530872 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATAC-AAA
1 TCCGGGTTAAG-TCCGAAGGCATTTGTGCGAGATACTAAA
* * *
63530911 TTCCGGGTTAAGCCCCAAGGCCTTTGTGCGAGATACTAAA
1 -TCCGGGTTAAGTCCGAAGGCATTTGTGCGAGATACTAAA
* * *
63530951 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGT-CCGAAGGCATTTGTGCGAGATACTAAA
* * *
63530991 TCCGGGTTATGTCCCGAAGGCA-TTGTGTGAGTTACTCAAA
1 TCCGGGTTAAGT-CCGAAGGCATTTGTGCGAGATACT-AAA
* *
63531031 -CCGGGCTATGTCCGAAGGCATTTG
1 TCCGGGTTAAGTCCGAAGGCATTTG
63531055 AACGAGGAGC
Statistics
Matches: 155, Mismatches: 20, Indels: 16
0.81 0.10 0.08
Matches are distributed among these distances:
38 9 0.06
39 68 0.44
40 68 0.44
41 9 0.06
42 1 0.01
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.26
Consensus pattern (39 bp):
TCCGGGTTAAGTCCGAAGGCATTTGTGCGAGATACTAAA
Found at i:63530937 original size:39 final size:39
Alignment explanation
Indices: 63530888--63531019 Score: 158
Period size: 40 Copynumber: 3.3 Consensus size: 39
63530878 CTAAGATCCG
63530888 AAGGCATTTGTGCGAGATACAAATTCCGGGTTAAG-CCCC
1 AAGGCATTTGTGCGAGATACAAA-TCCGGGTTAAGTCCCC
* *
63530927 AAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCG
1 AAGGCATTTGTGCGAGATAC-AAATCCGGGTTAAGTCCCC
* * * * *
63530967 AAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTCCCG
1 AAGGCATTTGTGCGAGATA-CAAATCCGGGTTAAGTCCCC
63531007 AAGGCATTGTGTG
1 AAGGCATT-TGTG
63531020 AGTTACTCAA
Statistics
Matches: 81, Mismatches: 8, Indels: 6
0.85 0.08 0.06
Matches are distributed among these distances:
39 30 0.37
40 48 0.59
41 3 0.04
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (39 bp):
AAGGCATTTGTGCGAGATACAAATCCGGGTTAAGTCCCC
Found at i:63530968 original size:79 final size:78
Alignment explanation
Indices: 63530873--63531054 Score: 199
Period size: 79 Copynumber: 2.3 Consensus size: 78
63530863 GTGAATATAT
* *
63530873 CCGGACTAAGATCCGAAGGCATTTGTGCGAGATA-CAAATTCCGGGTTAAG-CCCCAAGGCCTTT
1 CCGGGCTAAG-TCCGAAGGCATTTGTGCGAGATATCAAA-TCCGGGTTAAGTCCCCAAGG-CATT
63530936 GTGCGAGATACT-AAA
63 GTGCGAGATACTCAAA
* * * * * *
63530951 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTCCCGAAGGCATTG
1 -CCGGGCTAAGT-CCGAAGGCATTTGTGCGAGATATCAAATCCGGGTTAAGTCCCCAAGGCATTG
* *
63531016 TGTGAGTTACTCAAA
64 TGCGAGATACTCAAA
*
63531031 CCGGGCTATGTCCGAAGGCATTTG
1 CCGGGCTAAGTCCGAAGGCATTTG
63531055 AACGAGGAGC
Statistics
Matches: 86, Mismatches: 13, Indels: 9
0.80 0.12 0.08
Matches are distributed among these distances:
78 13 0.15
79 60 0.70
80 13 0.15
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (78 bp):
CCGGGCTAAGTCCGAAGGCATTTGTGCGAGATATCAAATCCGGGTTAAGTCCCCAAGGCATTGTG
CGAGATACTCAAA
Found at i:63537646 original size:39 final size:39
Alignment explanation
Indices: 63537495--63537664 Score: 191
Period size: 40 Copynumber: 4.3 Consensus size: 39
63537485 GGACTAAGAT
* * *
63537495 CCGAAGGCATTTGTGCGAGATAC-AAATTCCGGGTTAAGCC
1 CCGAAGGCA-TTGTGCGAGTTACTAAA-TCCGGGTTATGTC
* * *
63537535 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGG-CATTGTGCGAGTTACTAAATCCGGGTTATGTC
* *
63537575 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTT
1 CCGAAGGCATT-GTGCGAGTTACTAAATCCGGGTTATGTC
* *
63537615 CCGAAGGCATTGTGTGAGTTACTCAAA-CCGGGCTATGTC
1 CCGAAGGCATTGTGCGAGTTACT-AAATCCGGGTTATGTC
63537654 CCGAAGGCATT
1 CCGAAGGCATT
63537665 TGAACGAGGA
Statistics
Matches: 115, Mismatches: 11, Indels: 9
0.85 0.08 0.07
Matches are distributed among these distances:
39 34 0.30
40 77 0.67
41 4 0.03
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
CCGAAGGCATTGTGCGAGTTACTAAATCCGGGTTATGTC
Found at i:63539134 original size:49 final size:49
Alignment explanation
Indices: 63539060--63539400 Score: 604
Period size: 49 Copynumber: 7.1 Consensus size: 49
63539050 TTAGGCCTTA
63539060 TCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTT
1 TCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTT
*
63539109 TCACATTCATCACATCGGCCGTTAGGCCTTATCACATATATATACACTT
1 TCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTT
*
63539158 TCACATTCATCACATCGGCCGTTAGGCCTTATCAC--ATATATACACTT
1 TCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTT
63539205 TCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACTT
1 TCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTT
*
63539252 TCACATTCATCACATCGGCCATTAGGCCTTATCGCATATATATACACTT
1 TCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTT
63539301 TCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACTT
1 TCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTT
*
63539348 TTACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTT
1 TCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTT
63539397 TCAC
1 TCAC
63539401 GTATACACAC
Statistics
Matches: 282, Mismatches: 6, Indels: 8
0.95 0.02 0.03
Matches are distributed among these distances:
47 138 0.49
49 144 0.51
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (49 bp):
TCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTT
Found at i:63539234 original size:96 final size:95
Alignment explanation
Indices: 63539060--63539400 Score: 594
Period size: 96 Copynumber: 3.5 Consensus size: 95
63539050 TTAGGCCTTA
63539060 TCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATC
1 TCACATTCATCACATCGGCCATTAGGCCTTATCACA-ATATATACACTTTCACATTCATCACATC
*
63539125 GGCCGTTAGGCCTTATCACATATATATACACTT
65 GGCCATTAGGCCTTATCAC--ATATATACACTT
*
63539158 TCACATTCATCACATCGGCCGTTAGGCCTTATCAC-ATATATACACTTTCACATTCATCACATCG
1 TCACATTCATCACATCGGCCATTAGGCCTTATCACAATATATACACTTTCACATTCATCACATCG
63539222 GCCATTAGGCCTTATCACATATATACACTT
66 GCCATTAGGCCTTATCACATATATACACTT
*
63539252 TCACATTCATCACATCGGCCATTAGGCCTTATCGCATATATATACACTTTCACATTCATCACATC
1 TCACATTCATCACATCGGCCATTAGGCCTTATCACA-ATATATACACTTTCACATTCATCACATC
63539317 GGCCATTAGGCCTTATCACATATATACACTT
65 GGCCATTAGGCCTTATCACATATATACACTT
*
63539348 TTACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCAC
1 TCACATTCATCACATCGGCCATTAGGCCTTATCACA-ATATATACACTTTCAC
63539401 GTATACACAC
Statistics
Matches: 235, Mismatches: 6, Indels: 6
0.95 0.02 0.02
Matches are distributed among these distances:
94 45 0.19
96 156 0.66
98 34 0.14
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (95 bp):
TCACATTCATCACATCGGCCATTAGGCCTTATCACAATATATACACTTTCACATTCATCACATCG
GCCATTAGGCCTTATCACATATATACACTT
Found at i:63544614 original size:30 final size:30
Alignment explanation
Indices: 63544578--63544655 Score: 111
Period size: 30 Copynumber: 2.6 Consensus size: 30
63544568 GATGTTTGAC
* * * *
63544578 GTATCCCTTTTCTTTATTCGATAGCCGAGG
1 GTATCCCTTTTCATAATTCAATAGCCGAAG
63544608 GTATCCCTTTTCATAATTCAATAGCCGAAG
1 GTATCCCTTTTCATAATTCAATAGCCGAAG
*
63544638 CTATCCCTTTTCATAATT
1 GTATCCCTTTTCATAATT
63544656 TGATGGTTGT
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 43 1.00
ACGTcount: A:0.23, C:0.24, G:0.13, T:0.40
Consensus pattern (30 bp):
GTATCCCTTTTCATAATTCAATAGCCGAAG
Found at i:63544674 original size:30 final size:30
Alignment explanation
Indices: 63544640--63544802 Score: 161
Period size: 30 Copynumber: 5.5 Consensus size: 30
63544630 AGCCGAAGCT
*
63544640 ATCCCTTTTCATAATTTGATGGTTGTCACC
1 ATCCCTTTTCATAATTTGATGGTCGTCACC
** *
63544670 ATCCCTTTTCATAATTTGATAATCG-AAGCC
1 ATCCCTTTTCATAATTTGATGGTCGTCA-CC
**
63544700 ATCCCTTTTCATAATTCAATGGTCGTCACC
1 ATCCCTTTTCATAATTTGATGGTCGTCACC
* * * * * *
63544730 ATCCCATTCCGTAA-CTGATGGTTGCCACC
1 ATCCCTTTTCATAATTTGATGGTCGTCACC
* * *
63544759 ATCCCATTCCATAA-CTGATGGTCGTCACC
1 ATCCCTTTTCATAATTTGATGGTCGTCACC
63544788 ATCCCTTTTCATAAT
1 ATCCCTTTTCATAAT
63544803 CGATAGCCAA
Statistics
Matches: 108, Mismatches: 22, Indels: 6
0.79 0.16 0.04
Matches are distributed among these distances:
29 49 0.45
30 58 0.54
31 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.12, T:0.36
Consensus pattern (30 bp):
ATCCCTTTTCATAATTTGATGGTCGTCACC
Found at i:63544674 original size:60 final size:60
Alignment explanation
Indices: 63544610--63544826 Score: 192
Period size: 60 Copynumber: 3.7 Consensus size: 60
63544600 AGCCGAGGGT
* *
63544610 ATCCCTTTTCATAATTCAATAGCCGAAGCTATCCCTTTTCATAATTTGATGGTTGTCACC
1 ATCCCTTTTCATAATTCAATAGCCGAAGCCATCCCTTTTCATAATTTGATGGTCGTCACC
** ** **
63544670 ATCCCTTTTCATAATTTGATAATCGAAGCCATCCCTTTTCATAATTCAATGGTCGTCACC
1 ATCCCTTTTCATAATTCAATAGCCGAAGCCATCCCTTTTCATAATTTGATGGTCGTCACC
* * * * * * * * * *
63544730 ATCCCATTCCGTAACTGATGGTTGCC--A-CCATCCCATTCCATAA-CTGATGGTCGTCACC
1 ATCCCTTTTCATAATTCA--ATAGCCGAAGCCATCCCTTTTCATAATTTGATGGTCGTCACC
* * *
63544788 ATCCCTTTTCATAA-TCGATAGCCAAAGCTATCCCTTTTC
1 ATCCCTTTTCATAATTCAATAGCCGAAGCCATCCCTTTTC
63544827 GTAGTCGATA
Statistics
Matches: 119, Mismatches: 33, Indels: 12
0.73 0.20 0.07
Matches are distributed among these distances:
55 4 0.03
57 2 0.02
58 32 0.27
59 14 0.12
60 65 0.55
62 2 0.02
ACGTcount: A:0.25, C:0.29, G:0.12, T:0.35
Consensus pattern (60 bp):
ATCCCTTTTCATAATTCAATAGCCGAAGCCATCCCTTTTCATAATTTGATGGTCGTCACC
Found at i:63544758 original size:29 final size:29
Alignment explanation
Indices: 63544718--63544801 Score: 114
Period size: 29 Copynumber: 2.9 Consensus size: 29
63544708 TCATAATTCA
* *
63544718 ATGGTCGTCACCATCCCATTCCGTAACTG
1 ATGGTCGCCACCATCCCATTCCATAACTG
*
63544747 ATGGTTGCCACCATCCCATTCCATAACTG
1 ATGGTCGCCACCATCCCATTCCATAACTG
* * *
63544776 ATGGTCGTCACCATCCCTTTTCATAA
1 ATGGTCGCCACCATCCCATTCCATAA
63544802 TCGATAGCCA
Statistics
Matches: 48, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
29 48 1.00
ACGTcount: A:0.23, C:0.33, G:0.14, T:0.30
Consensus pattern (29 bp):
ATGGTCGCCACCATCCCATTCCATAACTG
Found at i:63544820 original size:29 final size:29
Alignment explanation
Indices: 63544788--63544856 Score: 93
Period size: 29 Copynumber: 2.4 Consensus size: 29
63544778 GGTCGTCACC
63544788 ATCCCTTTTCATAATCGATAGCCAAAGCT
1 ATCCCTTTTCATAATCGATAGCCAAAGCT
* * * *
63544817 ATCCCTTTTCGTAGTCGATAGTCGAAGCT
1 ATCCCTTTTCATAATCGATAGCCAAAGCT
*
63544846 ATCCCATTTCA
1 ATCCCTTTTCA
63544857 CCCGTCAATG
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
29 34 1.00
ACGTcount: A:0.26, C:0.28, G:0.13, T:0.33
Consensus pattern (29 bp):
ATCCCTTTTCATAATCGATAGCCAAAGCT
Found at i:63553347 original size:35 final size:35
Alignment explanation
Indices: 63553301--63553368 Score: 136
Period size: 35 Copynumber: 1.9 Consensus size: 35
63553291 ACATATGTTG
63553301 CGGTTACTTGACAGCTTGTGTGAGCAGCACCGTAT
1 CGGTTACTTGACAGCTTGTGTGAGCAGCACCGTAT
63553336 CGGTTACTTGACAGCTTGTGTGAGCAGCACCGT
1 CGGTTACTTGACAGCTTGTGTGAGCAGCACCGT
63553369 GTAGCTATGT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.19, C:0.24, G:0.29, T:0.28
Consensus pattern (35 bp):
CGGTTACTTGACAGCTTGTGTGAGCAGCACCGTAT
Found at i:63564876 original size:58 final size:57
Alignment explanation
Indices: 63564758--63564909 Score: 184
Period size: 58 Copynumber: 2.7 Consensus size: 57
63564748 AATAGTTATG
* *
63564758 ATTTT-TT-AATT-TATATAATAATAATTATATTAAGAATTTCATTAAATTATATATT
1 ATTTTATTAAATTATATTTAATAATAATTATATTAA-AATATCATTAAATTATATATT
* * ** *
63564813 ATTTTATTAAGTTATATTTAATAATAATTATGTTAAAATATGGTTAAATTATTTATT
1 ATTTTATTAAATTATATTTAATAATAATTATATTAAAATATCATTAAATTATATATT
* *
63564870 ATTTTTATTAAATTATTTTTAATAATAATTTTATTAAAAT
1 A-TTTTATTAAATTATATTTAATAATAATTATATTAAAAT
63564910 TTAATAACAA
Statistics
Matches: 82, Mismatches: 11, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
55 5 0.06
56 2 0.02
57 21 0.26
58 54 0.66
ACGTcount: A:0.42, C:0.01, G:0.03, T:0.54
Consensus pattern (57 bp):
ATTTTATTAAATTATATTTAATAATAATTATATTAAAATATCATTAAATTATATATT
Found at i:63564886 original size:14 final size:14
Alignment explanation
Indices: 63564867--63564907 Score: 50
Period size: 14 Copynumber: 3.1 Consensus size: 14
63564857 TAAATTATTT
63564867 ATTATTTTTATTAA
1 ATTATTTTTATTAA
*
63564881 ATTATTTTTAAT-A
1 ATTATTTTTATTAA
*
63564894 A-TAATTTTATTAA
1 ATTATTTTTATTAA
63564907 A
1 A
63564908 ATTTAATAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
12 8 0.35
13 4 0.17
14 11 0.48
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (14 bp):
ATTATTTTTATTAA
Found at i:63568238 original size:46 final size:46
Alignment explanation
Indices: 63568183--63568358 Score: 214
Period size: 46 Copynumber: 3.8 Consensus size: 46
63568173 TATTTGGGCA
63568183 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *** * *
63568229 TTCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA--
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAATG
*
63568276 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
63568322 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
63568359 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 14, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 68 0.62
47 31 0.28
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:63568338 original size:93 final size:93
Alignment explanation
Indices: 63568179--63568350 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
63568169 ATGATATTTG
**
63568179 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTTCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAG
63568244 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* *
63568272 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAG
63568337 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
63568351 ACTTATGGGC
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:63575674 original size:7 final size:7
Alignment explanation
Indices: 63575659--63575690 Score: 55
Period size: 7 Copynumber: 4.6 Consensus size: 7
63575649 CATCTGATAA
*
63575659 ATTTTAC
1 ATTTAAC
63575666 ATTTAAC
1 ATTTAAC
63575673 ATTTAAC
1 ATTTAAC
63575680 ATTTAAC
1 ATTTAAC
63575687 ATTT
1 ATTT
63575691 TTATTTTTTG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 24 1.00
ACGTcount: A:0.38, C:0.12, G:0.00, T:0.50
Consensus pattern (7 bp):
ATTTAAC
Found at i:63575831 original size:3 final size:3
Alignment explanation
Indices: 63575823--63575896 Score: 148
Period size: 3 Copynumber: 24.7 Consensus size: 3
63575813 TTGGTATGGC
63575823 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
63575871 AAG AAG AAG AAG AAG AAG AAG AAG AA
1 AAG AAG AAG AAG AAG AAG AAG AAG AA
63575897 TTACATGTGA
Statistics
Matches: 71, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 71 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:63576024 original size:31 final size:30
Alignment explanation
Indices: 63575983--63576041 Score: 75
Period size: 31 Copynumber: 1.9 Consensus size: 30
63575973 TATTTGACTC
*
63575983 TTTTTAAAAA-GATTGATGGTCAAATTTAATT
1 TTTTTAAAAAGGA-TGA-GGACAAATTTAATT
*
63576014 TTTTTTAAAAGGATGAGGACAAATTTAA
1 TTTTTAAAAAGGATGAGGACAAATTTAA
63576042 CTCAAAAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
30 11 0.44
31 12 0.48
32 2 0.08
ACGTcount: A:0.41, C:0.03, G:0.15, T:0.41
Consensus pattern (30 bp):
TTTTTAAAAAGGATGAGGACAAATTTAATT
Found at i:63576037 original size:30 final size:32
Alignment explanation
Indices: 63575983--63576041 Score: 86
Period size: 30 Copynumber: 1.9 Consensus size: 32
63575973 TATTTGACTC
*
63575983 TTTTTAAAAAGATTGATGGTCAAATTTAATTT
1 TTTTTAAAAAGATTGATGGACAAATTTAATTT
*
63576015 TTTTTAAAAGGA-TGA-GGACAAATTTAA
1 TTTTTAAAAAGATTGATGGACAAATTTAA
63576042 CTCAAAAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 11 0.44
31 3 0.12
32 11 0.44
ACGTcount: A:0.41, C:0.03, G:0.15, T:0.41
Consensus pattern (32 bp):
TTTTTAAAAAGATTGATGGACAAATTTAATTT
Found at i:63584911 original size:35 final size:35
Alignment explanation
Indices: 63584864--63584930 Score: 116
Period size: 35 Copynumber: 1.9 Consensus size: 35
63584854 CCATAATGAC
*
63584864 ATTTCCCGATTATAACTGATTTGATAGATATAGAA
1 ATTTCCCGATTATAACTAATTTGATAGATATAGAA
*
63584899 ATTTCCCTATTATAACTAATTTGATAGATATA
1 ATTTCCCGATTATAACTAATTTGATAGATATA
63584931 TTTCTATATC
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 30 1.00
ACGTcount: A:0.37, C:0.12, G:0.10, T:0.40
Consensus pattern (35 bp):
ATTTCCCGATTATAACTAATTTGATAGATATAGAA
Found at i:63592918 original size:13 final size:13
Alignment explanation
Indices: 63592896--63592931 Score: 54
Period size: 13 Copynumber: 2.8 Consensus size: 13
63592886 GCCTCAGGCA
*
63592896 CGGGCATGTGTCC
1 CGGGCGTGTGTCC
63592909 CGGGCGTGTGTCC
1 CGGGCGTGTGTCC
*
63592922 TGGGCGTGTG
1 CGGGCGTGTG
63592932 AAGCCTGCAC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.03, C:0.25, G:0.47, T:0.25
Consensus pattern (13 bp):
CGGGCGTGTGTCC
Found at i:63593822 original size:15 final size:16
Alignment explanation
Indices: 63593802--63593832 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
63593792 TTTTCATTTG
63593802 CATTTCA-TTACTTTC
1 CATTTCATTTACTTTC
63593817 CATTTCATTTACTTTC
1 CATTTCATTTACTTTC
63593833 TTTAGCTTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 7 0.47
16 8 0.53
ACGTcount: A:0.19, C:0.26, G:0.00, T:0.55
Consensus pattern (16 bp):
CATTTCATTTACTTTC
Found at i:63598152 original size:46 final size:44
Alignment explanation
Indices: 63598101--63598213 Score: 138
Period size: 46 Copynumber: 2.5 Consensus size: 44
63598091 CGAGAGCTAG
* *
63598101 TGTAAGACATGTTTGGGACGTGCATCGGCCT-CGAGATGTAAGGCAA
1 TGTAAGACATGTTTGGGACATGCATC-GACTACGAGATGT--GGCAA
* * *
63598147 TGTAAGACATGTCTGGGACATGCATCGACTACGAGATGTGTCAG
1 TGTAAGACATGTTTGGGACATGCATCGACTACGAGATGTGGCAA
63598191 TGTAAGACCATGTTTGGGACATG
1 TGTAAGA-CATGTTTGGGACATG
63598214 GAATCGGCAC
Statistics
Matches: 59, Mismatches: 6, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
44 10 0.17
45 17 0.29
46 32 0.54
ACGTcount: A:0.27, C:0.17, G:0.31, T:0.26
Consensus pattern (44 bp):
TGTAAGACATGTTTGGGACATGCATCGACTACGAGATGTGGCAA
Found at i:63598247 original size:94 final size:94
Alignment explanation
Indices: 63598005--63598317 Score: 258
Period size: 94 Copynumber: 3.3 Consensus size: 94
63597995 TTTGTGTGCT
* *
63598005 AGTGTAAGACATGTCTGGGACATGCATCGGCCACAT-TAT-TAGAGCCAGTGTAAGACCATGTCT
1 AGTGTAAGACATGTTTGGGACATGCATCGGCCACGTATATGTAGAG-CAGTGTAAGACCATGTCT
* *
63598068 GGGACATGGCATCAGCATTGA-GACGA-GAG-C
65 GGGACAT-GCATCAG-ACT-ACGACGATGTGTC
* * * *
63598098 TAGTGTAAGACATGTTTGGGACGTGCATCGGCCTCG-AGATGTA-AGGCAATGTAAGA-CATGTC
1 -AGTGTAAGACATGTTTGGGACATGCATCGGCCACGTATATGTAGA-GCAGTGTAAGACCATGTC
63598160 TGGGACATGCATC-GACTACGA-GATGTGTC
64 TGGGACATGCATCAGACTACGACGATGTGTC
*
63598189 AGTGTAAGACCATGTTTGGGACATGGAATCGG-CACGTATATGTGAGAGCTAGTGTAAGACCATG
1 AGTGTAAGA-CATGTTTGGGACAT-GCATCGGCCACGTATATGT-AGAGC-AGTGTAAGACCATG
* ***
63598253 -CTTGGGACATG-ATGTCAGCCT-CGATTTTGATAGTC
62 TC-TGGGACATGCA--TCAGACTACGACGATG-T-GTC
63598288 AGTGTAAGACCATGTTTGGGACATGGCATC
1 AGTGTAAGA-CATGTTTGGGACAT-GCATC
63598318 AACTTGATGG
Statistics
Matches: 182, Mismatches: 17, Indels: 35
0.78 0.07 0.15
Matches are distributed among these distances:
89 3 0.02
90 15 0.08
91 18 0.10
92 16 0.09
93 17 0.09
94 54 0.30
95 16 0.09
96 5 0.03
97 5 0.03
98 1 0.01
99 32 0.18
ACGTcount: A:0.27, C:0.18, G:0.30, T:0.25
Consensus pattern (94 bp):
AGTGTAAGACATGTTTGGGACATGCATCGGCCACGTATATGTAGAGCAGTGTAAGACCATGTCTG
GGACATGCATCAGACTACGACGATGTGTC
Found at i:63598307 original size:49 final size:49
Alignment explanation
Indices: 63598186--63598312 Score: 143
Period size: 49 Copynumber: 2.6 Consensus size: 49
63598176 TACGAGATGT
*
63598186 GTCAGTGTAAGACCATGTTTGGGACATGGAATCGGCACGTATATGTGAGA
1 GTCAGTGTAAGACCATGTTTGGGACAT-GAATCGCCACGTATATGTGAGA
* * * * *
63598236 G-CTAGTGTAAGACCATGCTTGGGACATGATGTCAGCCTCG-AT-TTTGATA
1 GTC-AGTGTAAGACCATGTTTGGGACATGA-ATC-GCCACGTATATGTGAGA
63598285 GTCAGTGTAAGACCATGTTTGGGACATG
1 GTCAGTGTAAGACCATGTTTGGGACATG
63598313 GCATCAACTT
Statistics
Matches: 66, Mismatches: 7, Indels: 9
0.80 0.09 0.11
Matches are distributed among these distances:
49 33 0.50
50 29 0.44
51 4 0.06
ACGTcount: A:0.26, C:0.16, G:0.30, T:0.28
Consensus pattern (49 bp):
GTCAGTGTAAGACCATGTTTGGGACATGAATCGCCACGTATATGTGAGA
Found at i:63606363 original size:37 final size:37
Alignment explanation
Indices: 63606313--63606391 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
63606303 TTATTACGAA
* * *
63606313 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
63606350 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
63606387 GTCTT
1 GTCTT
63606392 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:63606588 original size:47 final size:47
Alignment explanation
Indices: 63606510--63607114 Score: 1043
Period size: 47 Copynumber: 12.7 Consensus size: 47
63606500 CCCTTCGGGA
* * * *
63606510 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTT-GGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCA-TTAGGC
* *
63606557 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
63606604 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
63606651 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
63606698 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
63606745 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
63606794 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
63606843 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
63606890 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
63606937 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
63606986 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
63607033 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
63607080 CTTATCTCATATATGCA-TGTTCACATCCATCACAT
1 CTTATCACATATATACACT-TTCACATTCATCACAT
63607115 AGAATCCTAA
Statistics
Matches: 541, Mismatches: 11, Indels: 12
0.96 0.02 0.02
Matches are distributed among these distances:
46 3 0.01
47 395 0.73
49 143 0.26
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:63606902 original size:143 final size:143
Alignment explanation
Indices: 63606510--63607093 Score: 1052
Period size: 143 Copynumber: 4.1 Consensus size: 143
63606500 CCCTTCGGGA
* * * * *
63606510 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTT-GGCCCTGTCACATATATA
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCA-TTAGGCCTTATCACATATATA
63606572 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCAC
65 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCAC
63606637 ATCGGCCATTAGGC
130 ATCGGCCATTAGGC
63606651 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
63606714 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCA
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCA
63606779 CATCGGCCATTAGGC
129 CATCGGCCATTAGGC
63606794 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
63606859 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
63606924 TCGGCCATTAGGC
131 TCGGCCATTAGGC
63606937 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
63607002 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
63607067 TCGGCCATTAGGC
131 TCGGCCATTAGGC
*
63607080 CTTATCTCATATAT
1 CTTATCACATATAT
63607094 GCATGTTCAC
Statistics
Matches: 430, Mismatches: 6, Indels: 12
0.96 0.01 0.03
Matches are distributed among these distances:
140 3 0.01
141 91 0.21
143 242 0.56
145 94 0.22
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.33
Consensus pattern (143 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
TCGGCCATTAGGC
Found at i:63610964 original size:40 final size:40
Alignment explanation
Indices: 63610932--63611243 Score: 480
Period size: 40 Copynumber: 7.8 Consensus size: 40
63610922 CCAGCATGAT
* * * *
63610932 TGCTTTTCGGGACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* ** *
63610972 TGCTCTTTGGGGTTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* * *
63611012 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* * *
63611052 TGCTCTTCGGGATTTAACCTGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* *
63611092 TGCTCTTCGGAACTTAGTCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
63611132 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
63611172 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
63611212 TGCTCTTCGGGACTTAGCCCGGATATATCACT
1 TGCTCTTCGGGACTTAGCCCGGATATATCACT
63611244 CTCAATTCTC
Statistics
Matches: 244, Mismatches: 28, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 244 1.00
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.27
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
Found at i:63612518 original size:37 final size:38
Alignment explanation
Indices: 63612460--63612537 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 38
63612450 TTACGAAGTC
* * *
63612460 TTACCCGGACATAATCTCCACACGAAGTTATCGGGT-T
1 TTACCCGGACAAAATCCCCACACGAAGTCATCGGGTCT
*
63612497 TTACCCGGACAAAATCCCCACACGTAGTCATCGGGTCT
1 TTACCCGGACAAAATCCCCACACGAAGTCATCGGGTCT
63612535 TTA
1 TTA
63612538 GAGCTCGGAT
Statistics
Matches: 36, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
37 32 0.89
38 4 0.11
ACGTcount: A:0.27, C:0.29, G:0.18, T:0.26
Consensus pattern (38 bp):
TTACCCGGACAAAATCCCCACACGAAGTCATCGGGTCT
Found at i:63612732 original size:47 final size:47
Alignment explanation
Indices: 63612654--63613025 Score: 539
Period size: 47 Copynumber: 7.7 Consensus size: 47
63612644 CCCTTCGGGA
* * * * * *
63612654 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
63612701 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
63612748 CTTATCACATATATACACTTTCATATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
63612795 CTTATCACATATATACACTTTCACATTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACAC--T----TTCACATTCATCACATCGGCCATTAGGC
63612848 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
63612897 CTTATCACATATATACACTTTCACATTCGTCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
63612944 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
63612991 CTTATCTCATATATGCA-TGTTCACATCCATCACAT
1 CTTATCACATATATACACT-TTCACATTCATCACAT
63613026 AGAATCCTAA
Statistics
Matches: 299, Mismatches: 17, Indels: 18
0.90 0.05 0.05
Matches are distributed among these distances:
46 1 0.00
47 215 0.72
49 37 0.12
53 36 0.12
55 10 0.03
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:63612916 original size:149 final size:143
Alignment explanation
Indices: 63612654--63613004 Score: 535
Period size: 149 Copynumber: 2.4 Consensus size: 143
63612644 CCCTTCGGGA
* * * * * * * *
63612654 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCAC--ATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
*
63612717 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCATATTCATCACA
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
63612782 TCGGCCATTAGGC
131 TCGGCCATTAGGC
63612795 CTTATCACATATATACACTTTCACATTCACATTCATCACATCGGCCATTAGGCCTTATCACATAT
1 CTTATCACATATATACAC--T----TTCACATTCATCACATCGGCCATTAGGCCTTATCACATAT
63612860 ATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTC
60 ATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTC
*
63612925 GTCACATCGGCCATTAGGC
125 ATCACATCGGCCATTAGGC
*
63612944 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCTCATATAT
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT
63613005 GCATGTTCAC
Statistics
Matches: 191, Mismatches: 11, Indels: 14
0.88 0.05 0.06
Matches are distributed among these distances:
141 17 0.09
143 42 0.22
147 30 0.16
149 102 0.53
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.33
Consensus pattern (143 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
TCGGCCATTAGGC
Found at i:63623067 original size:40 final size:39
Alignment explanation
Indices: 63623023--63623157 Score: 130
Period size: 40 Copynumber: 3.4 Consensus size: 39
63623013 ACCAGCTTGG
*
63623023 CACCCAGTGCCTCATCGGATAATTCGAAGTAATAATTTGA
1 CACCCAGTGCCTCATCGGATAATCCGAAGTAATAA-TTGA
* * * * *
63623063 CACCCAGTGTCTCATCAGTTAAACCGAAGT-A-AATTGG
1 CACCCAGTGCCTCATCGGATAATCCGAAGTAATAATTGA
* * * *
63623100 CATCTAGTACCTCATCGAATTAATCCGAAGTAATAGATTGA
1 CACCCAGTGCCTCATCGGA-TAATCCGAAGTAATA-ATTGA
*
63623141 CACCCAGTGTCTCATCG
1 CACCCAGTGCCTCATCG
63623158 ACTCAAGGTC
Statistics
Matches: 72, Mismatches: 19, Indels: 7
0.73 0.19 0.07
Matches are distributed among these distances:
37 15 0.21
38 12 0.17
39 2 0.03
40 26 0.36
41 17 0.24
ACGTcount: A:0.32, C:0.24, G:0.17, T:0.27
Consensus pattern (39 bp):
CACCCAGTGCCTCATCGGATAATCCGAAGTAATAATTGA
Found at i:63623969 original size:12 final size:12
Alignment explanation
Indices: 63623952--63623984 Score: 59
Period size: 12 Copynumber: 2.8 Consensus size: 12
63623942 ATCTCTAGCT
63623952 TTTCTCTTTTTC
1 TTTCTCTTTTTC
63623964 TTTCTCTTTTTC
1 TTTCTCTTTTTC
63623976 TTT-TCTTTT
1 TTTCTCTTTT
63623985 CTATTTCGTT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 6 0.29
12 15 0.71
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (12 bp):
TTTCTCTTTTTC
Found at i:63623981 original size:17 final size:17
Alignment explanation
Indices: 63623959--63624011 Score: 56
Period size: 17 Copynumber: 3.2 Consensus size: 17
63623949 GCTTTTCTCT
63623959 TTTTCTTTCTCTTTTTC
1 TTTTCTTTCTCTTTTTC
*
63623976 TTTTCTTT-TCTATTTC
1 TTTTCTTTCTCTTTTTC
* *
63623992 GTTTCTTGCT-TTATTTC
1 TTTTCTTTCTCTT-TTTC
63624009 TTT
1 TTT
63624012 ATTTCTTTTT
Statistics
Matches: 29, Mismatches: 5, Indels: 4
0.76 0.13 0.11
Matches are distributed among these distances:
16 14 0.48
17 15 0.52
ACGTcount: A:0.04, C:0.19, G:0.04, T:0.74
Consensus pattern (17 bp):
TTTTCTTTCTCTTTTTC
Found at i:63623996 original size:16 final size:17
Alignment explanation
Indices: 63623960--63624017 Score: 57
Period size: 16 Copynumber: 3.5 Consensus size: 17
63623950 CTTTTCTCTT
* *
63623960 TTTCTTTCTCTTTTTCT
1 TTTCTTTCTCTATTTCG
63623977 TTTCTTT-TCTATTTCG
1 TTTCTTTCTCTATTTCG
* *
63623993 TTTCTTGCTTTATTTC-
1 TTTCTTTCTCTATTTCG
*
63624009 TTTATTTCT
1 TTTCTTTCT
63624018 TTTTCTATTC
Statistics
Matches: 34, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
16 20 0.59
17 14 0.41
ACGTcount: A:0.05, C:0.19, G:0.03, T:0.72
Consensus pattern (17 bp):
TTTCTTTCTCTATTTCG
Found at i:63624071 original size:8 final size:8
Alignment explanation
Indices: 63624049--63624091 Score: 68
Period size: 8 Copynumber: 5.2 Consensus size: 8
63624039 TTATATTTTA
63624049 ATAATAAT
1 ATAATAAT
63624057 AATAATAAT
1 -ATAATAAT
63624066 ATAATAAT
1 ATAATAAT
*
63624074 ATAATGAT
1 ATAATAAT
63624082 ATAATAAT
1 ATAATAAT
63624090 AT
1 AT
63624092 TTACTTAAAT
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
8 24 0.75
9 8 0.25
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.37
Consensus pattern (8 bp):
ATAATAAT
Found at i:63624106 original size:3 final size:3
Alignment explanation
Indices: 63624047--63624090 Score: 58
Period size: 3 Copynumber: 15.7 Consensus size: 3
63624037 CTTTATATTT
*
63624047 TAA TAA TAA TAA TAA TAA T-A TAA TAA T-A TAA TGA T-A TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
63624091 TTTACTTAAA
Statistics
Matches: 37, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
2 6 0.16
3 31 0.84
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.36
Consensus pattern (3 bp):
TAA
Found at i:63634836 original size:49 final size:51
Alignment explanation
Indices: 63634706--63634838 Score: 162
Period size: 51 Copynumber: 2.6 Consensus size: 51
63634696 TCTATTGTGA
*
63634706 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACATC
1 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCCGATAACATC
* * * * * * *
63634757 GATCACGTGTGTAGTACCAAGTGCAGGCTACTACGTGTACCGGAT-A-ATT
1 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCCGATAACATC
* *
63634806 GGTCGCATGTGTAATACTAAGTGTAGGCTACTA
1 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTA
63634839 TGCATACTAG
Statistics
Matches: 68, Mismatches: 14, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
49 29 0.43
50 1 0.01
51 38 0.56
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.27
Consensus pattern (51 bp):
GGTCGCATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCCGATAACATC
Found at i:63638224 original size:21 final size:21
Alignment explanation
Indices: 63638200--63638240 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
63638190 TGGGAATGTG
63638200 CCTTAGACACACGGCCGTGTT
1 CCTTAGACACACGGCCGTGTT
* *
63638221 CCTTAGCCACACGGTCGTGT
1 CCTTAGACACACGGCCGTGT
63638241 GAGTTTTCCA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.17, C:0.34, G:0.24, T:0.24
Consensus pattern (21 bp):
CCTTAGACACACGGCCGTGTT
Found at i:63640613 original size:47 final size:47
Alignment explanation
Indices: 63640535--63641520 Score: 1612
Period size: 47 Copynumber: 20.8 Consensus size: 47
63640525 CCCTTCGGGA
* * * * * *
63640535 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
63640582 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
63640629 CTCATCACATATATACACTTTAACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
63640676 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
63640723 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
63640772 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
63640819 CTTATCACATATACACACTTTCACTTTCATCACATCGGCCATTAGGT
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
63640866 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
63640915 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGT
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
63640962 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGT
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
63641011 CTTATCAGATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATC--ACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
63641060 CTCATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
63641107 CTCATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
63641154 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
63641201 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
63641248 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
63641295 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
63641342 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGT
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
63641389 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
63641438 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
63641485 CTTATCACATATATACACTTTCACATTCATTACATC
1 CTTATCACATATATACACTTTCACATTCATCACATC
63641521 ACAATTATCC
Statistics
Matches: 881, Mismatches: 48, Indels: 20
0.93 0.05 0.02
Matches are distributed among these distances:
47 657 0.75
49 223 0.25
51 1 0.00
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:63640791 original size:143 final size:141
Alignment explanation
Indices: 63640535--63641520 Score: 1630
Period size: 143 Copynumber: 6.9 Consensus size: 141
63640525 CCCTTCGGGA
* * * * * * * *
63640535 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
* *
63640600 TTTCACATTCATCACATCGGCCATTAGGCCTCATCACATATATACACTTTAACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
63640665 GGCTATTAGGC
131 GGCTATTAGGC
63640676 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
* *
63640741 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACA
64 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
63640806 TCGGCTATTAGGC
129 TCGGCTATTAGGC
* * *
63640819 CTTATCACATATACACACTTTCACTTTCATCACATCGGCCATTAGGTCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
63640884 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
64 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
* *
63640949 TCGGCCATTAGGT
129 TCGGCTATTAGGC
* *
63640962 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGTCTTATCAGATATATAT
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATC--ACATATAT
*
63641027 ACACTTTCACATTCATCACATCGGCCATTAGGCCTCATCACATATATACACTTTCACATTCATCA
62 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCA
63641092 CATCGGCTATTAGGC
127 CATCGGCTATTAGGC
*
63641107 CTCATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
* *
63641172 TTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
63641237 GGCTATTAGGC
131 GGCTATTAGGC
63641248 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
*
63641313 TTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
* *
63641378 GGCCATTAGGT
131 GGCTATTAGGC
63641389 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
* *
63641454 ACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATTACA
64 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
63641519 TC
129 TC
63641521 ACAATTATCC
Statistics
Matches: 799, Mismatches: 38, Indels: 14
0.94 0.04 0.02
Matches are distributed among these distances:
141 274 0.34
143 391 0.49
145 133 0.17
147 1 0.00
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (141 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
GGCTATTAGGC
Found at i:63645053 original size:40 final size:40
Alignment explanation
Indices: 63645021--63645324 Score: 419
Period size: 40 Copynumber: 7.6 Consensus size: 40
63645011 CCAGCATGAT
* * * *
63645021 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATATATCACTAGCACGAA
* *** *
63645061 TGCTCTTTGGGGTTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATATATCACTAGCACGAA
*
63645101 TGCTCTTTGGAACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATATATCACTAGCACGAA
63645141 TGCTCTTCGGAACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATATATCACTAGCACGAA
* * *
63645181 TGCTCTTCGGAACTTAGCCAGGATACATCACTAGCATGAA
1 TGCTCTTCGGAACTTAGCCCGGATATATCACTAGCACGAA
* * * *
63645221 TGCTCTTTGGGACTTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGAACTTAGCCCGGATATATCACTAGCACGAA
* *
63645261 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGAACTTAGCCCGGATATATCACTAGCACGAA
* *
63645301 TGCTCTTCGGGACTTAGCCTGGAT
1 TGCTCTTCGGAACTTAGCCCGGAT
63645325 CATCGTCGAG
Statistics
Matches: 242, Mismatches: 22, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 242 1.00
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (40 bp):
TGCTCTTCGGAACTTAGCCCGGATATATCACTAGCACGAA
Found at i:63645424 original size:38 final size:38
Alignment explanation
Indices: 63645382--63645456 Score: 107
Period size: 38 Copynumber: 2.0 Consensus size: 38
63645372 GAATTTTAAT
*
63645382 CCGGACATAATCTCTGT-ACATAGCCATCGGGTCTTTAC
1 CCGGACATAATCTCT-TCACATAGCCAGCGGGTCTTTAC
* *
63645420 CCGGACATAATCTCTTCATATAGTCAGCGGGTCTTTA
1 CCGGACATAATCTCTTCACATAGCCAGCGGGTCTTTA
63645457 AACTCGGATT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
37 1 0.03
38 32 0.97
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.31
Consensus pattern (38 bp):
CCGGACATAATCTCTTCACATAGCCAGCGGGTCTTTAC
Found at i:63647667 original size:47 final size:47
Alignment explanation
Indices: 63647589--63648479 Score: 1496
Period size: 47 Copynumber: 18.8 Consensus size: 47
63647579 CCCTTCGGGA
* * * * * *
63647589 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
63647636 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
63647683 CTCATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
63647730 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
63647777 CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
63647826 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGT
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
63647873 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
63647922 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGT
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
63647969 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
63648018 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
63648065 C-TATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
63648111 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
63648158 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
63648207 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
63648254 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGT
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
63648301 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
63648350 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
63648397 CTCATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
63648444 CTTATCACATATATACACTTTCACATTCATTACATC
1 CTTATCACATATATACACTTTCACATTCATCACATC
63648480 ACAATTATCC
Statistics
Matches: 799, Mismatches: 34, Indels: 22
0.93 0.04 0.03
Matches are distributed among these distances:
46 45 0.06
47 525 0.66
49 229 0.29
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:63647818 original size:96 final size:94
Alignment explanation
Indices: 63647589--63648479 Score: 1496
Period size: 96 Copynumber: 9.4 Consensus size: 94
63647579 CCCTTCGGGA
* * * * * * * *
63647589 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
63647654 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
* *
63647683 CTCATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
63647748 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
*
63647777 CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATAC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
63647842 ACTTTCACATTCATCACATCGGCCATTAGGT
64 ACTTTCACATTCATCACATCGGCCATTAGGC
63647873 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
63647938 ACTTTCACATTCATCACATCGGCCATTAGGT
64 ACTTTCACATTCATCACATCGGCCATTAGGC
63647969 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
63648034 ACTTTCACATTCATCACATCGGCCATTAGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
*
63648065 C-TATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
63648129 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
* *
63648158 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
63648223 ACTTTCACATTCATCACATCGGCTATTAGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
*
63648254 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGTCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
63648319 ACTTTCACATTCATCACATCGGCCATTAGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
*
63648350 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTCATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
*
63648415 TTTCACATTCATCACATCGGCTATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
*
63648444 CTTATCACATATATACACTTTCACATTCATTACATC
1 CTTATCACATATATACACTTTCACATTCATCACATC
63648480 ACAATTATCC
Statistics
Matches: 763, Mismatches: 27, Indels: 14
0.95 0.03 0.02
Matches are distributed among these distances:
93 86 0.11
94 214 0.28
95 6 0.01
96 457 0.60
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (94 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGC
Found at i:63647845 original size:143 final size:141
Alignment explanation
Indices: 63647589--63648479 Score: 1496
Period size: 143 Copynumber: 6.3 Consensus size: 141
63647579 CCCTTCGGGA
* * * * * * * *
63647589 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
*
63647654 TTTCACATTCATCACATCGGCCATTAGGCCTCATCACATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
*
63647719 GGCTATTAGGC
131 GGCCATTAGGC
63647730 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
*
63647795 ACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
64 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
*
63647860 TCGGCCATTAGGT
129 TCGGCCATTAGGC
63647873 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
63647938 ACTTTCACATTCATCACATCGGCCATTAGGTCTTATCACATATATATACACTTTCACATTCATCA
64 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCA
63648003 CATCGGCCATTAGGC
127 CATCGGCCATTAGGC
63648018 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC-TATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
*
63648082 TTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
63648147 GGCCATTAGGC
131 GGCCATTAGGC
* *
63648158 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
63648223 ACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
64 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
*
63648288 TCGGCCATTAGGT
129 TCGGCCATTAGGC
63648301 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
63648366 ACTTTCACATTCATCACATCGGCCATTAGGCCTCATCACATATATACACTTTCACATTCATCACA
64 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
*
63648431 TCGGCTATTAGGC
129 TCGGCCATTAGGC
*
63648444 CTTATCACATATATACACTTTCACATTCATTACATC
1 CTTATCACATATATACACTTTCACATTCATCACATC
63648480 ACAATTATCC
Statistics
Matches: 714, Mismatches: 27, Indels: 18
0.94 0.04 0.02
Matches are distributed among these distances:
140 47 0.07
141 74 0.10
142 89 0.12
143 411 0.58
145 93 0.13
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (141 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
GGCCATTAGGC
Found at i:63663158 original size:62 final size:61
Alignment explanation
Indices: 63663061--63663198 Score: 181
Period size: 62 Copynumber: 2.2 Consensus size: 61
63663051 ATCAGCCAAA
* * * * *
63663061 TCGCACACTCAATGCTAAATCTTTGTAACGTATCGCACACTTAGTGCCGTTACATTAA-CATC
1 TCGCACACTTAGTGCTAAATCTTTGTAACGTATCGCACACTCAGTGCCGTCAC-TTAATC-CC
*
63663123 TCGCACACTTAGTGCTAAAATC-TTGTGACGTATCGCACACTCAGTGCCGTCACTTAATCCC
1 TCGCACACTTAGTGCT-AAATCTTTGTAACGTATCGCACACTCAGTGCCGTCACTTAATCCC
63663184 TCGCACACTTAGTGC
1 TCGCACACTTAGTGC
63663199 CATATTTCTC
Statistics
Matches: 68, Mismatches: 6, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
61 20 0.29
62 43 0.63
63 5 0.07
ACGTcount: A:0.26, C:0.30, G:0.15, T:0.29
Consensus pattern (61 bp):
TCGCACACTTAGTGCTAAATCTTTGTAACGTATCGCACACTCAGTGCCGTCACTTAATCCC
Found at i:63665779 original size:33 final size:33
Alignment explanation
Indices: 63665721--63665792 Score: 94
Period size: 33 Copynumber: 2.2 Consensus size: 33
63665711 GTTTGCATCT
*
63665721 CTGATACTGTACTAAATTGGGCTAAGG-CCACA
1 CTGATACTGTACCAAATTGGGCTAAGGCCCACA
63665753 CTGATACTGATACCATAA-TGGGCTAAGGCCCACA
1 CTGATACTG-TACCA-AATTGGGCTAAGGCCCACA
*
63665787 TTGATA
1 CTGATA
63665793 TTGCTACTGA
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
32 9 0.26
33 14 0.40
34 12 0.34
ACGTcount: A:0.32, C:0.22, G:0.21, T:0.25
Consensus pattern (33 bp):
CTGATACTGTACCAAATTGGGCTAAGGCCCACA
Found at i:63671303 original size:56 final size:58
Alignment explanation
Indices: 63671212--63671360 Score: 153
Period size: 56 Copynumber: 2.6 Consensus size: 58
63671202 ATCGTATAAC
* * * * *
63671212 AGGACTACCAGTCCAGGCTAAATCCTTTATATAACGTATGCTC-A-AAGAGCTTA-ATT
1 AGGATTACCAGTCCAGGCTAAATCCCTAATATAACGTATACTCGAGAAGA-ATTATATT
*
63671268 AGGATTACCAGTCCAGGCTAAA-CCCTAATCGTAACGTATACTCGAGAAGAATTATATT
1 AGGATTACCAGTCCAGGCTAAATCCCTAAT-ATAACGTATACTCGAGAAGAATTATATT
** * * *
63671326 AGGATTACTTGTCCAAGCTAAATCCTTTATATAAC
1 AGGATTACCAGTCCAGGCTAAATCCCTAATATAAC
63671361 AAGGTCAAGA
Statistics
Matches: 76, Mismatches: 12, Indels: 8
0.79 0.12 0.08
Matches are distributed among these distances:
55 5 0.07
56 32 0.42
57 4 0.05
58 30 0.39
59 5 0.07
ACGTcount: A:0.35, C:0.21, G:0.15, T:0.29
Consensus pattern (58 bp):
AGGATTACCAGTCCAGGCTAAATCCCTAATATAACGTATACTCGAGAAGAATTATATT
Found at i:63672725 original size:6 final size:6
Alignment explanation
Indices: 63672643--63672724 Score: 155
Period size: 6 Copynumber: 13.7 Consensus size: 6
63672633 AGTTAATTTG
63672643 TTTTCT TTTTCT TTTTCT TTTTCT TTTTCT TTTTCT TTTTCT TTTTCT
1 TTTTCT TTTTCT TTTTCT TTTTCT TTTTCT TTTTCT TTTTCT TTTTCT
*
63672691 TTTTCT TTTTCT TTTTCT TTTTCT TTTTAT TTTT
1 TTTTCT TTTTCT TTTTCT TTTTCT TTTTCT TTTT
63672725 AGTTGTTTTT
Statistics
Matches: 75, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
6 75 1.00
ACGTcount: A:0.01, C:0.15, G:0.00, T:0.84
Consensus pattern (6 bp):
TTTTCT
Found at i:63673744 original size:17 final size:17
Alignment explanation
Indices: 63673722--63673761 Score: 80
Period size: 17 Copynumber: 2.4 Consensus size: 17
63673712 GTTCTTGTAC
63673722 AAAAAAAAGAAAATTGA
1 AAAAAAAAGAAAATTGA
63673739 AAAAAAAAGAAAATTGA
1 AAAAAAAAGAAAATTGA
63673756 AAAAAA
1 AAAAAA
63673762 TATATATTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.80, C:0.00, G:0.10, T:0.10
Consensus pattern (17 bp):
AAAAAAAAGAAAATTGA
Found at i:63675939 original size:27 final size:26
Alignment explanation
Indices: 63675891--63675950 Score: 66
Period size: 27 Copynumber: 2.3 Consensus size: 26
63675881 GCGAGGCTAC
*
63675891 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
63675918 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
*
63675944 TAGATAT
1 CAGATAT
63675951 ATATATATAT
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 7 0.25
27 21 0.75
ACGTcount: A:0.35, C:0.18, G:0.23, T:0.23
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:63680693 original size:47 final size:47
Alignment explanation
Indices: 63680639--63681162 Score: 796
Period size: 47 Copynumber: 11.1 Consensus size: 47
63680629 TTAGGATTTT
** ** * * *
63680639 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCAA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
*** *
63680686 ATGTGATGAATGTGAACCTGTATATATATGCGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAA-C---ATGCGTATGTGTGATAAGGCCGAATGGCCA
*
63680737 ATGTGATGAATGTGAACATGCGTATGTGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
*
63680784 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGTCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
63680831 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
63680878 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
63680925 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
*
63680972 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCTGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
*
63681019 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCTGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
* * *
63681066 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
* ** * * *
63681113 ATGTGATGGATGTGAACATGTATATATGTGGTAAGGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
63681160 ATG
1 ATG
63681163 CGAAATGTGT
Statistics
Matches: 448, Mismatches: 25, Indels: 8
0.93 0.05 0.02
Matches are distributed among these distances:
47 407 0.91
50 1 0.00
51 40 0.09
ACGTcount: A:0.31, C:0.11, G:0.31, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
Found at i:63681272 original size:46 final size:46
Alignment explanation
Indices: 63681136--63681272 Score: 193
Period size: 46 Copynumber: 3.0 Consensus size: 46
63681126 GAACATGTAT
* *
63681136 ATATGTGGTAAGGCCGAATGGCTAATGCGAAATGTGTATGAGATAG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
* * *
63681182 ATATGAGGTAAAGCCGAATGGCTAGTGCGAAACGTGTATGAGATGG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
* * * *
63681228 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTATGAGATG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATG
63681273 TGTATATATA
Statistics
Matches: 79, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
46 79 1.00
ACGTcount: A:0.34, C:0.09, G:0.32, T:0.26
Consensus pattern (46 bp):
ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
Found at i:63681510 original size:37 final size:37
Alignment explanation
Indices: 63681457--63681568 Score: 188
Period size: 37 Copynumber: 3.0 Consensus size: 37
63681447 GTGGTGACTA
*
63681457 TGTCTGGGTTAAGACCCGATAACTTCGTGTGGAGATTT
1 TGTCCGGG-TAAGACCCGATAACTTCGTGTGGAGATTT
* *
63681495 TGTCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
1 TGTCCGGGTAAGACCCGATAACTTCGTGTGGAGATTT
63681532 TGTCCGGGTAAGACCCGATAACTTCGTGTGGAGATTT
1 TGTCCGGGTAAGACCCGATAACTTCGTGTGGAGATTT
63681569 CATCTGAGCT
Statistics
Matches: 69, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
37 62 0.90
38 7 0.10
ACGTcount: A:0.21, C:0.18, G:0.30, T:0.30
Consensus pattern (37 bp):
TGTCCGGGTAAGACCCGATAACTTCGTGTGGAGATTT
Found at i:63687365 original size:46 final size:46
Alignment explanation
Indices: 63687312--63687487 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
63687302 TGGTTGAGCA
63687312 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
63687358 TCTGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
**
63687403 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
63687451 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
63687488 GCGGGTTACA
Statistics
Matches: 108, Mismatches: 13, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 62 0.57
47 28 0.26
48 3 0.03
50 4 0.04
51 1 0.01
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:63687468 original size:93 final size:93
Alignment explanation
Indices: 63687309--63687480 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
63687299 GGATGGTTGA
* * *
63687309 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCTGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
63687374 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
63687402 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
63687467 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
63687481 CTTATGGGCG
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:63694928 original size:46 final size:46
Alignment explanation
Indices: 63694878--63695053 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
63694868 TGGTTGAGCA
63694878 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
63694924 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
**
63694969 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
63695017 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
63695054 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 1 0.01
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:63695034 original size:93 final size:93
Alignment explanation
Indices: 63694875--63695046 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
63694865 GGATGGTTGA
* *
63694875 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
63694940 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
63694968 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
63695033 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
63695047 CTTATGGGCG
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:63704683 original size:39 final size:39
Alignment explanation
Indices: 63704629--63704712 Score: 132
Period size: 39 Copynumber: 2.2 Consensus size: 39
63704619 AGTGATCAAA
* *
63704629 TTGTTTTTTGTGCAATCTATTTGTAAGTATGTCTAGAAT
1 TTGTTTTTTGTGCAATCCATTTGTAAGTATATCTAGAAT
* *
63704668 TTGTTTTTTGTGCAATCCGTTTGTAAGTCTATCTAGAAT
1 TTGTTTTTTGTGCAATCCATTTGTAAGTATATCTAGAAT
63704707 TTGTTT
1 TTGTTT
63704713 AGTCATTGAT
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 41 1.00
ACGTcount: A:0.20, C:0.10, G:0.18, T:0.52
Consensus pattern (39 bp):
TTGTTTTTTGTGCAATCCATTTGTAAGTATATCTAGAAT
Found at i:63707897 original size:20 final size:20
Alignment explanation
Indices: 63707872--63707916 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
63707862 AGGGACTAAA
* *
63707872 ATGAAAATTTGTAAAATTTG
1 ATGAAAAATTCTAAAATTTG
*
63707892 ATGAAAAATTCTAAAATTTT
1 ATGAAAAATTCTAAAATTTG
63707912 ATGAA
1 ATGAA
63707917 TGCATGTGCT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.49, C:0.02, G:0.11, T:0.38
Consensus pattern (20 bp):
ATGAAAAATTCTAAAATTTG
Found at i:63710264 original size:31 final size:30
Alignment explanation
Indices: 63710191--63710273 Score: 109
Period size: 29 Copynumber: 2.8 Consensus size: 30
63710181 TTCATTCTCG
*
63710191 ACATATACTGGGCCGAAGCC-TTTCATTTA
1 ACATATACTGGGCCGAAGCCTTTTCATTAA
63710220 ACGAT-TACTGGGCCGAAGCCTTTTCA-TAA
1 AC-ATATACTGGGCCGAAGCCTTTTCATTAA
63710249 ATCATATCACTGGGCCGAAGCCTTT
1 A-CATAT-ACTGGGCCGAAGCCTTT
63710274 ACTATAAACG
Statistics
Matches: 48, Mismatches: 1, Indels: 8
0.84 0.02 0.14
Matches are distributed among these distances:
29 22 0.46
30 9 0.19
31 17 0.35
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (30 bp):
ACATATACTGGGCCGAAGCCTTTTCATTAA
Found at i:63710748 original size:27 final size:27
Alignment explanation
Indices: 63710718--63710822 Score: 88
Period size: 27 Copynumber: 3.9 Consensus size: 27
63710708 GGGGCAAAAT
*
63710718 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTTTACCCTACAAGGGTATCTC
* * *
63710745 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATCTC
* *
63710772 GAT-ATTTCTACTCTACAAGGGTAT-TAC
1 GGTAATTT-TACCCTACAAGGGTATCT-C
* * * *
63710799 GATAATTCTACCTTACAGGGGTAT
1 GGTAATTTTACCCTACAAGGGTAT
63710823 TTAAGTAATT
Statistics
Matches: 63, Mismatches: 12, Indels: 6
0.78 0.15 0.07
Matches are distributed among these distances:
26 4 0.06
27 56 0.89
28 3 0.05
ACGTcount: A:0.27, C:0.21, G:0.19, T:0.33
Consensus pattern (27 bp):
GGTAATTTTACCCTACAAGGGTATCTC
Found at i:63710823 original size:27 final size:27
Alignment explanation
Indices: 63710747--63710837 Score: 105
Period size: 27 Copynumber: 3.4 Consensus size: 27
63710737 GGTATCTCGG
* *
63710747 TAATTCTACCCTACAGGGGTATTTCGA
1 TAATTCTACCTTACAGGGGTATTACGA
* *
63710774 TATTTCTA-CTCTACAAGGGTATTACGA
1 TAATTCTACCT-TACAGGGGTATTACGA
*
63710801 TAATTCTACCTTACAGGGGTATTTAAG-
1 TAATTCTACCTTACAGGGGTA-TTACGA
63710828 TAATTCTACC
1 TAATTCTACC
63710838 CCATAGGGGT
Statistics
Matches: 54, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
26 1 0.02
27 47 0.87
28 6 0.11
ACGTcount: A:0.29, C:0.20, G:0.15, T:0.36
Consensus pattern (27 bp):
TAATTCTACCTTACAGGGGTATTACGA
Found at i:63710848 original size:54 final size:52
Alignment explanation
Indices: 63710719--63710850 Score: 147
Period size: 54 Copynumber: 2.5 Consensus size: 52
63710709 GGGCAAAATG
* * *
63710719 GTAATTTTACCCCACAAGGGTATCTCGGTAATTCTACCCTACAGGGGTATTTC
1 GTAATTCTACCCCACAAGGGTAT-TCGATAATTCTACCCTACAGGGGTATTTA
* * * *
63710772 GATATTTCTACTCTACAAGGGTATTACGATAATTCTACCTTACAGGGGTATTTAA
1 G-TAATTCTACCCCACAAGGGTATT-CGATAATTCTACCCTACAGGGGTATTT-A
* *
63710827 GTAATTCTACCCCATAGGGGTATT
1 GTAATTCTACCCCACAAGGGTATT
63710851 TCAATCATTT
Statistics
Matches: 64, Mismatches: 12, Indels: 5
0.79 0.15 0.06
Matches are distributed among these distances:
53 2 0.03
54 61 0.95
55 1 0.02
ACGTcount: A:0.27, C:0.20, G:0.18, T:0.34
Consensus pattern (52 bp):
GTAATTCTACCCCACAAGGGTATTCGATAATTCTACCCTACAGGGGTATTTA
Found at i:63710921 original size:27 final size:27
Alignment explanation
Indices: 63710897--63711076 Score: 213
Period size: 27 Copynumber: 6.7 Consensus size: 27
63710887 CTGTAAATTG
* *
63710897 GGGGTACTTTAGTAATTTTACAAATC-
1 GGGGTATTTTGGTAATTTTACAAATCA
** * *
63710923 GAGGGTATTTCAGTAATTTCACAAATTA
1 G-GGGTATTTTGGTAATTTTACAAATCA
* *
63710951 GGGGTCTTTTGGTAATTTTACAAACCA
1 GGGGTATTTTGGTAATTTTACAAATCA
*
63710978 -GGGTATTTTGGTAATTTTACAAACCA
1 GGGGTATTTTGGTAATTTTACAAATCA
*
63711004 GGGGTATTTTGGTAATTTCACAAA-CTA
1 GGGGTATTTTGGTAATTTTACAAATC-A
*
63711031 GGGGTATTTTGGTAATTTTACAAACCA
1 GGGGTATTTTGGTAATTTTACAAATCA
*
63711058 GGGGTATTTTGGGAATTTT
1 GGGGTATTTTGGTAATTTT
63711077 TCTAATCGAG
Statistics
Matches: 135, Mismatches: 14, Indels: 9
0.85 0.09 0.06
Matches are distributed among these distances:
26 27 0.20
27 106 0.79
28 2 0.01
ACGTcount: A:0.29, C:0.11, G:0.22, T:0.38
Consensus pattern (27 bp):
GGGGTATTTTGGTAATTTTACAAATCA
Found at i:63710949 original size:54 final size:53
Alignment explanation
Indices: 63710897--63711116 Score: 219
Period size: 54 Copynumber: 4.1 Consensus size: 53
63710887 CTGTAAATTG
* * **
63710897 GGGGTACTTTAGTAATTTTACAAATCGAGGGTATTTCAGTAATTTCACAAATTA
1 GGGGTACTTTGGTAATTTTACAAA-CGAGGGTATTTCAGTAATTTTACAAACCA
* **
63710951 GGGGT-CTTTTGGTAATTTTACAAACCAGGGTATTTTGGTAATTTTACAAACCA
1 GGGGTAC-TTTGGTAATTTTACAAACGAGGGTATTTCAGTAATTTTACAAACCA
* * * **
63711004 GGGGTATTTTGGTAATTTCACAAACTAGGGGTATTTTGGTAATTTTACAAACCA
1 GGGGTACTTTGGTAATTTTACAAACGA-GGGTATTTCAGTAATTTTACAAACCA
* * * * **
63711058 GGGGTATTTTGGGAATTTTTCTAATCGAGGGTA-TTCAGTAATTTTGTAAACCA
1 GGGGTACTTTGGTAATTTTAC-AAACGAGGGTATTTCAGTAATTTTACAAACCA
*
63711111 AGGGTA
1 GGGGTA
63711117 TTTCAGTAAC
Statistics
Matches: 142, Mismatches: 20, Indels: 9
0.83 0.12 0.05
Matches are distributed among these distances:
53 68 0.48
54 70 0.49
55 4 0.03
ACGTcount: A:0.30, C:0.11, G:0.22, T:0.37
Consensus pattern (53 bp):
GGGGTACTTTGGTAATTTTACAAACGAGGGTATTTCAGTAATTTTACAAACCA
Found at i:63710998 original size:80 final size:81
Alignment explanation
Indices: 63710897--63711101 Score: 290
Period size: 80 Copynumber: 2.6 Consensus size: 81
63710887 CTGTAAATTG
* * * *
63710897 GGGGTACTTTAGTAATTTTACAAATCGAGGGTATTTCAGTAATTTCACAAATTAGGGGTCTTTTG
1 GGGGTATTTTGGTAATTTTACAAATCGAGGGTATTTCAGTAATTTCACAAACTAGGGGTATTTTG
63710962 GTAATTTTACAAACCA
66 GTAATTTTACAAACCA
* **
63710978 -GGGTATTTTGGTAATTTTACAAA-CCAGGGGTATTTTGGTAATTTCACAAACTAGGGGTATTTT
1 GGGGTATTTTGGTAATTTTACAAATCGA-GGGTATTTCAGTAATTTCACAAACTAGGGGTATTTT
63711041 GGTAATTTTACAAACCA
65 GGTAATTTTACAAACCA
* * *
63711058 GGGGTATTTTGGGAATTTTTCTAATCGAGGGTA-TTCAGTAATTT
1 GGGGTATTTTGGTAATTTTACAAATCGAGGGTATTTCAGTAATTT
63711102 TGTAAACCAA
Statistics
Matches: 108, Mismatches: 13, Indels: 7
0.84 0.10 0.05
Matches are distributed among these distances:
79 2 0.02
80 79 0.73
81 25 0.23
82 2 0.02
ACGTcount: A:0.29, C:0.11, G:0.22, T:0.39
Consensus pattern (81 bp):
GGGGTATTTTGGTAATTTTACAAATCGAGGGTATTTCAGTAATTTCACAAACTAGGGGTATTTTG
GTAATTTTACAAACCA
Found at i:63711114 original size:26 final size:27
Alignment explanation
Indices: 63711085--63711135 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
63711075 TTTCTAATCG
* *
63711085 AGGGTA-TTCAGTAATTTTGTAAACCA
1 AGGGTATTTCAGTAACTTGGTAAACCA
63711111 AGGGTATTTCAGTAACTTGGTAAAC
1 AGGGTATTTCAGTAACTTGGTAAAC
63711136 TAAAGTATTC
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 6 0.27
27 16 0.73
ACGTcount: A:0.33, C:0.12, G:0.22, T:0.33
Consensus pattern (27 bp):
AGGGTATTTCAGTAACTTGGTAAACCA
Found at i:63711143 original size:26 final size:27
Alignment explanation
Indices: 63711091--63711144 Score: 65
Period size: 27 Copynumber: 2.0 Consensus size: 27
63711081 ATCGAGGGTA
* * *
63711091 TTCAGTAATTTTGTAAACCAAGGGTAT
1 TTCAGTAACTTGGTAAACCAAGAGTAT
*
63711118 TTCAGTAACTTGGTAAACTAA-AGTAT
1 TTCAGTAACTTGGTAAACCAAGAGTAT
63711144 T
1 T
63711145 CTAAACAGAG
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
26 5 0.22
27 18 0.78
ACGTcount: A:0.35, C:0.11, G:0.17, T:0.37
Consensus pattern (27 bp):
TTCAGTAACTTGGTAAACCAAGAGTAT
Found at i:63711725 original size:22 final size:22
Alignment explanation
Indices: 63711700--63711748 Score: 89
Period size: 22 Copynumber: 2.2 Consensus size: 22
63711690 CGCCACCTTC
63711700 CTGCCTCTTATGTGGCACTACT
1 CTGCCTCTTATGTGGCACTACT
63711722 CTGCCTCTTATGTGGCACTACT
1 CTGCCTCTTATGTGGCACTACT
*
63711744 TTGCC
1 CTGCC
63711749 ACTAGACCAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.12, C:0.33, G:0.18, T:0.37
Consensus pattern (22 bp):
CTGCCTCTTATGTGGCACTACT
Found at i:63715022 original size:46 final size:45
Alignment explanation
Indices: 63714972--63715147 Score: 160
Period size: 46 Copynumber: 3.8 Consensus size: 45
63714962 TGGTTGAGCA
* * *
63714972 TCCGAACTCGTTAAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATG-AAACG
* * *
63715018 TCCGAACTCATTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATG-AA--A--CG
* *
63715065 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGAGAACG
1 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGA-AACG
* * **
63715111 ACCGAGCTCATTGAGTTGAGTCCGAGTTTGCTTATGG
1 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGG
63715148 GCGGGTTACA
Statistics
Matches: 105, Mismatches: 17, Indels: 16
0.76 0.12 0.12
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 59 0.56
47 28 0.27
48 3 0.03
49 1 0.01
50 5 0.05
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.29
Consensus pattern (45 bp):
TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGAAACG
Found at i:63715128 original size:93 final size:93
Alignment explanation
Indices: 63714969--63715138 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
63714959 GGATGGTTGA
* * *
63714969 GCATCCGAACTCGTTAAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCATTGAGT
1 GCATCCGAACTCGTTAAGTTGAGTCCGAGTTCACTCATGGATGCAAACGACCGAACTCATTGAGT
63715034 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
63715062 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATG-AGAACGACCGAGCTCATTGAG
1 GCATCCGAACTCGTTAAGTTGAGTCCGAGTTCACTCATGGATGCA-AACGACCGAACTCATTGAG
63715126 TTGAGTCCGAGTT
65 TTGAGTCCGAGTT
63715139 TGCTTATGGG
Statistics
Matches: 71, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
92 1 0.01
93 70 0.99
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTAAGTTGAGTCCGAGTTCACTCATGGATGCAAACGACCGAACTCATTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:63717025 original size:29 final size:29
Alignment explanation
Indices: 63716990--63717047 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
63716980 GCACGAAATG
63716990 AAAGTTGTGATTGTGATGCAAATATCTAT
1 AAAGTTGTGATTGTGATGCAAATATCTAT
63717019 AAAGTTGTGATTGTGATGCAAATATCTAT
1 AAAGTTGTGATTGTGATGCAAATATCTAT
63717048 GTTTGTTTGG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.34, C:0.07, G:0.21, T:0.38
Consensus pattern (29 bp):
AAAGTTGTGATTGTGATGCAAATATCTAT
Found at i:63720585 original size:46 final size:46
Alignment explanation
Indices: 63720535--63720710 Score: 187
Period size: 46 Copynumber: 3.8 Consensus size: 46
63720525 TGGTTGAGCA
63720535 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
* * * *
63720581 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--ATG
* * * *
63720626 CATCCGAACTCGTTAAGTTGAGTCTGAGTTCACTCATGGATGCGAATG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
* * **
63720674 CCCGAGCTCGTTGAGTTGAGTCCGAGTTTGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
63720711 GCGGGTTACA
Statistics
Matches: 105, Mismatches: 18, Indels: 14
0.77 0.13 0.10
Matches are distributed among these distances:
43 6 0.06
45 4 0.04
46 59 0.56
47 27 0.26
48 4 0.04
50 5 0.05
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
Found at i:63720691 original size:93 final size:93
Alignment explanation
Indices: 63720532--63720701 Score: 286
Period size: 93 Copynumber: 1.8 Consensus size: 93
63720522 GGATGGTTGA
* * *
63720532 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTAAGTTGAGTCCGAGTTCACTCATGGATGCAAATGCCCGAACTCGTTGAGT
63720597 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
63720625 GCATCCGAACTCGTTAAGTTGAGTCTGAGTTCACTCATGGATGCGAATGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTAAGTTGAGTCCGAGTTCACTCATGGATGCAAATGCCCGAACTCGTTGAGT
63720690 TGAGTCCGAGTT
66 TGAGTCCGAGTT
63720702 TGCTTATGGG
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTAAGTTGAGTCCGAGTTCACTCATGGATGCAAATGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:63726211 original size:56 final size:56
Alignment explanation
Indices: 63726151--63726340 Score: 317
Period size: 56 Copynumber: 3.4 Consensus size: 56
63726141 TCCCAGACAG
*
63726151 GGTCTTACTCGCACACATATATCGAAATCACATATCGATGCCAACGTATTAAACGT
1 GGTCTTACTCACACACATATATCGAAATCACATATCGATGCCAACGTATTAAACGT
* * * *
63726207 GGTCTTACTCACACACATATATCGGAATCACATATTGATGCTAATGTATTAAACGT
1 GGTCTTACTCACACACATATATCGAAATCACATATCGATGCCAACGTATTAAACGT
*
63726263 GGTCTTACTCACACACATATATCGAAATCACATATCCATGCCAACGTATTAAACGT
1 GGTCTTACTCACACACATATATCGAAATCACATATCGATGCCAACGTATTAAACGT
*
63726319 GGTCTTACTCGCACACATATAT
1 GGTCTTACTCACACACATATAT
63726341 TGATGCCATG
Statistics
Matches: 123, Mismatches: 11, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
56 123 1.00
ACGTcount: A:0.34, C:0.24, G:0.13, T:0.29
Consensus pattern (56 bp):
GGTCTTACTCACACACATATATCGAAATCACATATCGATGCCAACGTATTAAACGT
Found at i:63730775 original size:10 final size:10
Alignment explanation
Indices: 63730760--63730791 Score: 57
Period size: 10 Copynumber: 3.3 Consensus size: 10
63730750 TAAATACATT
63730760 TAATTAAAGA
1 TAATTAAAGA
63730770 TAATTAAAGA
1 TAATTAAAGA
63730780 TAATTAAA-A
1 TAATTAAAGA
63730789 TAA
1 TAA
63730792 AATCCTAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
9 4 0.18
10 18 0.82
ACGTcount: A:0.62, C:0.00, G:0.06, T:0.31
Consensus pattern (10 bp):
TAATTAAAGA
Found at i:63730817 original size:27 final size:26
Alignment explanation
Indices: 63730787--63730849 Score: 63
Period size: 27 Copynumber: 2.3 Consensus size: 26
63730777 AGATAATTAA
63730787 AATAAAATCCTAAAATTAAATAATCCT
1 AATAAAATCCTAAAATT-AATAATCCT
* * * *
63730814 AATAATTATCTTAATATTAATTATCCT
1 AATAA-AATCCTAAAATTAATAATCCT
63730841 AATATAAAT
1 AATA-AAAT
63730850 AAAATGGAGT
Statistics
Matches: 29, Mismatches: 5, Indels: 4
0.76 0.13 0.11
Matches are distributed among these distances:
27 19 0.66
28 10 0.34
ACGTcount: A:0.51, C:0.11, G:0.00, T:0.38
Consensus pattern (26 bp):
AATAAAATCCTAAAATTAATAATCCT
Found at i:63730836 original size:15 final size:15
Alignment explanation
Indices: 63730816--63730845 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
63730806 ATAATCCTAA
*
63730816 TAATTATCTTAATAT
1 TAATTATCCTAATAT
63730831 TAATTATCCTAATAT
1 TAATTATCCTAATAT
63730846 AAATAAAATG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.40, C:0.10, G:0.00, T:0.50
Consensus pattern (15 bp):
TAATTATCCTAATAT
Found at i:63732402 original size:18 final size:16
Alignment explanation
Indices: 63732380--63732424 Score: 58
Period size: 15 Copynumber: 2.8 Consensus size: 16
63732370 TTAATATCTG
63732380 AATAAAATAAAATAATA
1 AATAAAATAAAATAA-A
63732397 ATATAAAAT-AAATAAA
1 A-ATAAAATAAAATAAA
63732413 AATAAAA-AAAAT
1 AATAAAATAAAAT
63732425 TGGGTTGCCT
Statistics
Matches: 26, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
15 10 0.38
16 2 0.08
17 7 0.27
18 7 0.27
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (16 bp):
AATAAAATAAAATAAA
Found at i:63738394 original size:40 final size:40
Alignment explanation
Indices: 63738346--63738613 Score: 473
Period size: 40 Copynumber: 6.7 Consensus size: 40
63738336 GCAAACACAT
* ** *
63738346 TTGCCTTCGGGTCTTAACCCGGACGTATCAACTTGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
63738386 TTGCCTTCGGGTCTTAGCCCGGATATATCATCTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
63738426 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
63738466 TTGCCTTCGGGTCGTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
63738506 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
63738546 TTGCCTTCGGGTCTTAGCCCGGATATATCATCTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
63738586 TTGCCTTCGGGTCTTAGCCCGGATATAT
1 TTGCCTTCGGGTCTTAGCCCGGATATAT
63738614 TCCAATGCTC
Statistics
Matches: 219, Mismatches: 9, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 219 1.00
ACGTcount: A:0.21, C:0.27, G:0.21, T:0.31
Consensus pattern (40 bp):
TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
Found at i:63747093 original size:40 final size:40
Alignment explanation
Indices: 63747045--63747309 Score: 473
Period size: 40 Copynumber: 6.7 Consensus size: 40
63747035 GCAAACACAT
* * *
63747045 TTGCCTTCGGGTCTTAACCCGGACATATCAACTTGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
63747085 TTGCCTTCGGGTCTTAGCCCGGATATATCATCTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
63747125 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
63747165 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
63747205 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
63747245 TTGCCTTCGGGTCTTAGCCCGGATATAT--ACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
63747283 TTGCCTTC-GGTCTTAGCCCGGATATAT
1 TTGCCTTCGGGTCTTAGCCCGGATATAT
63747310 TCCAATGCTC
Statistics
Matches: 220, Mismatches: 5, Indels: 3
0.96 0.02 0.01
Matches are distributed among these distances:
37 19 0.09
38 18 0.08
40 183 0.83
ACGTcount: A:0.22, C:0.27, G:0.20, T:0.31
Consensus pattern (40 bp):
TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
Found at i:63755739 original size:39 final size:40
Alignment explanation
Indices: 63755650--63755838 Score: 328
Period size: 39 Copynumber: 4.8 Consensus size: 40
63755640 CCGCAAACAC
* * *
63755650 ATTGCCTTCGGGTCTTAACCCGGACATATCAACTTGCATA
1 ATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATA
*
63755690 ATTGCCTTCGGGTCTTAGCCCGGATATAT-ATCTCGCATA
1 ATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATA
63755729 ATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATA
1 ATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATA
63755769 ATTGCCTTCGGGTCTTAGCCCGGATATA-CAACTCGCATA
1 ATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATA
63755808 ATTGCCTTCGGGTCTTAGCCCGGATATATCA
1 ATTGCCTTCGGGTCTTAGCCCGGATATATCA
63755839 TCGCAAATGC
Statistics
Matches: 142, Mismatches: 5, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
39 76 0.54
40 66 0.46
ACGTcount: A:0.22, C:0.27, G:0.20, T:0.31
Consensus pattern (40 bp):
ATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATA
Found at i:63755781 original size:79 final size:79
Alignment explanation
Indices: 63755650--63755838 Score: 333
Period size: 79 Copynumber: 2.4 Consensus size: 79
63755640 CCGCAAACAC
* * *
63755650 ATTGCCTTCGGGTCTTAACCCGGACATATCAACTTGCATAATTGCCTTCGGGTCTTAGCCCGGAT
1 ATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAATTGCCTTCGGGTCTTAGCCCGGAT
* *
63755715 ATATATCTCGCATA
66 ATACAACTCGCATA
63755729 ATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAATTGCCTTCGGGTCTTAGCCCGGAT
1 ATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAATTGCCTTCGGGTCTTAGCCCGGAT
63755794 ATACAACTCGCATA
66 ATACAACTCGCATA
63755808 ATTGCCTTCGGGTCTTAGCCCGGATATATCA
1 ATTGCCTTCGGGTCTTAGCCCGGATATATCA
63755839 TCGCAAATGC
Statistics
Matches: 105, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
79 105 1.00
ACGTcount: A:0.22, C:0.27, G:0.20, T:0.31
Consensus pattern (79 bp):
ATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAATTGCCTTCGGGTCTTAGCCCGGAT
ATACAACTCGCATA
Found at i:63757039 original size:30 final size:29
Alignment explanation
Indices: 63757005--63757070 Score: 73
Period size: 30 Copynumber: 2.2 Consensus size: 29
63756995 TTAATTTAAC
63757005 ATATAATTCACCCATA-T-CATATTCAGCTAT
1 ATATAATTCA-CCATATTCCAT-TTCAGC-AT
*
63757035 ATATACATTTACCATATTCCATTTCAGCAT
1 ATATA-ATTCACCATATTCCATTTCAGCAT
63757065 ATATAA
1 ATATAA
63757071 CTAACATTTA
Statistics
Matches: 32, Mismatches: 1, Indels: 7
0.80 0.03 0.17
Matches are distributed among these distances:
29 1 0.03
30 17 0.53
31 11 0.34
32 3 0.09
ACGTcount: A:0.38, C:0.21, G:0.03, T:0.38
Consensus pattern (29 bp):
ATATAATTCACCATATTCCATTTCAGCAT
Found at i:63768527 original size:47 final size:47
Alignment explanation
Indices: 63768476--63768963 Score: 685
Period size: 47 Copynumber: 10.6 Consensus size: 47
63768466 GGATATTGTG
* *
63768476 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
63768523 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
63768570 ATGTG-AAGTGTATATATGTGATAAGGCCGAAT-G-CAATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
63768614 ATGTGAAAGTGTATATATATGTGATAAGGCCTAAT-GCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
63768662 AT-TGAAAGT-TATATATGTGATAA-GCCTAATGCCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
63768706 A--TG-AAGTGTATATATGTGATAAGGCCGAATGG-CAATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
63768749 ATGTG-AAGTGTATATAAAAGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATAT--ATGTGATAAGGCCTAATGGCCGATGTGATGA
*
63768797 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
63768844 ATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * * *
63768891 ATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGG
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
63768938 ATGTGAAAGCGTATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
63768964 TCCGAAGGGC
Statistics
Matches: 399, Mismatches: 29, Indels: 26
0.88 0.06 0.06
Matches are distributed among these distances:
42 4 0.01
43 34 0.09
44 49 0.12
45 18 0.05
46 26 0.07
47 231 0.58
48 27 0.07
49 10 0.03
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (47 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:63782907 original size:27 final size:28
Alignment explanation
Indices: 63782877--63782934 Score: 72
Period size: 26 Copynumber: 2.2 Consensus size: 28
63782867 TTGTTAAAAC
63782877 TCTTCTAAAA-GAAAACTCAATAGA-AAT
1 TCTTCTAAAATGAAAACTCAA-AGAGAAT
63782904 TC-T-TAAAATGAAAACTCAAAGAGAAT
1 TCTTCTAAAATGAAAACTCAAAGAGAAT
63782930 T-TTCT
1 TCTTCT
63782935 TTAACTCAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 8
0.77 0.00 0.23
Matches are distributed among these distances:
25 8 0.30
26 16 0.59
27 3 0.11
ACGTcount: A:0.48, C:0.14, G:0.09, T:0.29
Consensus pattern (28 bp):
TCTTCTAAAATGAAAACTCAAAGAGAAT
Found at i:63782918 original size:26 final size:25
Alignment explanation
Indices: 63782882--63782930 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 25
63782872 AAAACTCTTC
63782882 TAAAAGAAAACTCAATAGA-AATTCT
1 TAAAAGAAAACTCAA-AGAGAATTCT
63782907 TAAAATGAAAACTCAAAGAGAATT
1 TAAAA-GAAAACTCAAAGAGAATT
63782931 TTCTTTAACT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
25 8 0.36
26 14 0.64
ACGTcount: A:0.57, C:0.10, G:0.10, T:0.22
Consensus pattern (25 bp):
TAAAAGAAAACTCAAAGAGAATTCT
Found at i:63784336 original size:68 final size:67
Alignment explanation
Indices: 63784162--63784336 Score: 172
Period size: 68 Copynumber: 2.6 Consensus size: 67
63784152 CCTCAAAAGA
* * * * * * * * * *
63784162 GGTTACAGGTGTAAGACCACAACTCGACTATGGCGAC-TATAGAGTCTGCCAAGACATTAAACAT
1 GGTTACATGTGTAAGACCATATCTCGGCTATGACAACATGTGGAGTCCGCCAAGACACTAAACAT
63784226 AG
66 AG
* * *
63784228 GGTTACATGTGTAAGTCTATATCTCGGCTATGGCAACATGTGGAGTCCGCCAAGACACTAAACAT
1 GGTTACATGTGTAAGACCATATCTCGGCTATGACAACATGTGGAGTCCGCCAAGACACTAAACAT
*
63784293 GG
66 AG
* * * *
63784295 GGATTACATGTGTAAGACCATTTCTTGGCTATTACAGCATGT
1 GG-TTACATGTGTAAGACCATATCTCGGCTATGACAACATGT
63784337 AAGGTCCATA
Statistics
Matches: 88, Mismatches: 19, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
66 30 0.34
67 26 0.30
68 32 0.36
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.26
Consensus pattern (67 bp):
GGTTACATGTGTAAGACCATATCTCGGCTATGACAACATGTGGAGTCCGCCAAGACACTAAACAT
AG
Found at i:63789484 original size:43 final size:43
Alignment explanation
Indices: 63789437--63789572 Score: 118
Period size: 43 Copynumber: 3.2 Consensus size: 43
63789427 TCCCAGATGT
* * *
63789437 GGTCTTACATGTAATTCAATATCGATGCCTCTGTCCCAGACAG
1 GGTCTTACACGTAATTCAATATCGATGCCTATGTCCCAGACAC
* * * *
63789480 GGTCTTACACG-AAATCAGATA-CGATGTCGATGTCCCAGACAT
1 GGTCTTACACGTAATTCA-ATATCGATGCCTATGTCCCAGACAC
* * * *
63789522 GGTCGTATACGTAAATCTCAAT-T-GAGGCCTGTGTCCCAGACAC
1 GGTCTTACACGT-AAT-TCAATATCGATGCCTATGTCCCAGACAC
63789565 GGTCTTAC
1 GGTCTTAC
63789573 GCGATGTCTC
Statistics
Matches: 72, Mismatches: 16, Indels: 10
0.73 0.16 0.10
Matches are distributed among these distances:
42 31 0.43
43 34 0.47
44 4 0.06
45 3 0.04
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.27
Consensus pattern (43 bp):
GGTCTTACACGTAATTCAATATCGATGCCTATGTCCCAGACAC
Found at i:63790364 original size:6 final size:6
Alignment explanation
Indices: 63790353--63790386 Score: 68
Period size: 6 Copynumber: 5.7 Consensus size: 6
63790343 TGGCTTTCTC
63790353 CTTTTT CTTTTT CTTTTT CTTTTT CTTTTT CTTT
1 CTTTTT CTTTTT CTTTTT CTTTTT CTTTTT CTTT
63790387 GATTTTCGGC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (6 bp):
CTTTTT
Found at i:63804372 original size:20 final size:20
Alignment explanation
Indices: 63804334--63804376 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
63804324 TAAATTCTAA
* **
63804334 AAAGATAAATACATTTAATT
1 AAAGATAAATAAAGATAATT
63804354 AAAGATAAATAAAGATAATT
1 AAAGATAAATAAAGATAATT
63804374 AAA
1 AAA
63804377 ATTAAATCCT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.63, C:0.02, G:0.07, T:0.28
Consensus pattern (20 bp):
AAAGATAAATAAAGATAATT
Found at i:63808091 original size:29 final size:29
Alignment explanation
Indices: 63808057--63808116 Score: 111
Period size: 29 Copynumber: 2.1 Consensus size: 29
63808047 ATATGCATGG
*
63808057 TAAGGTTGCTTATTTTTTGCATACGAGCT
1 TAAGGTTGCTTATTTCTTGCATACGAGCT
63808086 TAAGGTTGCTTATTTCTTGCATACGAGCT
1 TAAGGTTGCTTATTTCTTGCATACGAGCT
63808115 TA
1 TA
63808117 CTAAGCTATA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.22, C:0.15, G:0.20, T:0.43
Consensus pattern (29 bp):
TAAGGTTGCTTATTTCTTGCATACGAGCT
Found at i:63809501 original size:27 final size:26
Alignment explanation
Indices: 63809453--63809504 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
63809443 GCGAGGCTAC
*
63809453 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
63809479 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
63809505 TTGCAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Done.