Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100714657
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 3970000 characters in sequence are not A, C, G, or T
File 202 of 318
Found at i:63814115 original size:93 final size:93
Alignment explanation
Indices: 63813956--63814126 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
63813946 GGATGGTTGA
*
63813956 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGTCCGAACTCGTTGAGT
63814021 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
63814049 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CTCGAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGTC-CGAACTCGTTGAG
63814113 TTGAGTCCGAGTTC
65 TTGAGTCCGAGTTC
63814127 ACTTAGGGGC
Statistics
Matches: 74, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
92 1 0.01
93 73 0.99
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:63814129 original size:46 final size:47
Alignment explanation
Indices: 63813959--63814131 Score: 214
Period size: 46 Copynumber: 3.7 Consensus size: 47
63813949 TGGTTGAGCA
* *
63813959 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATG-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
* * *
63814005 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGGC
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---GC
63814051 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
1 -TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
*
63814099 T-CGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
63814132 GGGGCGGGTT
Statistics
Matches: 109, Mismatches: 9, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 2 0.02
46 60 0.55
47 30 0.28
48 4 0.04
50 4 0.04
51 3 0.03
ACGTcount: A:0.21, C:0.21, G:0.28, T:0.29
Consensus pattern (47 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
Found at i:63823151 original size:47 final size:47
Alignment explanation
Indices: 63823082--63823177 Score: 147
Period size: 47 Copynumber: 2.0 Consensus size: 47
63823072 TCCTTAAATA
** *
63823082 TGAAAGTGTTTTACACTAGGCTTTTGACCTGTCAAAAGCTTATAAGG
1 TGAAAGTGTTTTACACTAGGCTTTCAACCTATCAAAAGCTTATAAGG
* *
63823129 TGAAAGTGTTTTAGACTAGGCTTTCAACCTATCCAAAGCTTATAAGG
1 TGAAAGTGTTTTACACTAGGCTTTCAACCTATCAAAAGCTTATAAGG
63823176 TG
1 TG
63823178 TTTTTGCAAC
Statistics
Matches: 44, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 44 1.00
ACGTcount: A:0.30, C:0.16, G:0.21, T:0.33
Consensus pattern (47 bp):
TGAAAGTGTTTTACACTAGGCTTTCAACCTATCAAAAGCTTATAAGG
Found at i:63830043 original size:47 final size:47
Alignment explanation
Indices: 63829992--63830308 Score: 519
Period size: 47 Copynumber: 6.7 Consensus size: 47
63829982 TTAGGATTCT
* * *
63829992 ATGTGATGGATGTGAACA-TGCATATATGAGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCG
63830039 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
63830086 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
63830133 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
63830180 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * * * *
63830227 ATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * *
63830274 ACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
63830309 TCCCGAAGGG
Statistics
Matches: 256, Mismatches: 13, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
46 1 0.00
47 255 1.00
ACGTcount: A:0.32, C:0.09, G:0.31, T:0.28
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:63830483 original size:37 final size:37
Alignment explanation
Indices: 63830427--63830505 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
63830417 CCGAGCTCTA
* * *
63830427 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
63830464 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
63830501 AAGAC
1 AAGAC
63830506 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:63833592 original size:21 final size:21
Alignment explanation
Indices: 63833566--63833607 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
63833556 TTCAACATTT
63833566 ATCATACT-ATATATTAATTCA
1 ATCATA-TAATATATTAATTCA
*
63833587 ATCATATAATATTTTAATTCA
1 ATCATATAATATATTAATTCA
63833608 CTTAATTCAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 1 0.05
21 18 0.95
ACGTcount: A:0.43, C:0.12, G:0.00, T:0.45
Consensus pattern (21 bp):
ATCATATAATATATTAATTCA
Found at i:63842282 original size:30 final size:30
Alignment explanation
Indices: 63842248--63842346 Score: 137
Period size: 30 Copynumber: 3.3 Consensus size: 30
63842238 GCTGACAAAA
63842248 CAGTCACTTAATTTTGAAAAAGTGACATAG
1 CAGTCACTTAATTTTGAAAAAGTGACATAG
* * * *
63842278 CAGTCAC-TAAGGTTATCAAAAAGTGACAAAA
1 CAGTCACTTAA--TTTTGAAAAAGTGACATAG
63842309 CAGTCACTTAATTTTGAAAAAGTGACATAG
1 CAGTCACTTAATTTTGAAAAAGTGACATAG
63842339 CAGTCACT
1 CAGTCACT
63842347 AAGGTTATCA
Statistics
Matches: 58, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
29 3 0.05
30 30 0.52
31 22 0.38
32 3 0.05
ACGTcount: A:0.41, C:0.16, G:0.16, T:0.26
Consensus pattern (30 bp):
CAGTCACTTAATTTTGAAAAAGTGACATAG
Found at i:63842302 original size:31 final size:31
Alignment explanation
Indices: 63842240--63842376 Score: 156
Period size: 31 Copynumber: 4.5 Consensus size: 31
63842230 TTAAGGTAGC
* *
63842240 TGACAAAACAGTCACTTAA--TTTTGAAAAAG
1 TGACAAAACAGTCAC-TAAGGTTATCAAAAAG
* *
63842270 TGACATAGCAGTCACTAAGGTTATCAAAAAG
1 TGACAAAACAGTCACTAAGGTTATCAAAAAG
* *
63842301 TGACAAAACAGTCACTTAA--TTTTGAAAAAG
1 TGACAAAACAGTCAC-TAAGGTTATCAAAAAG
* *
63842331 TGACATAGCAGTCACTAAGGTTATCAAAAAG
1 TGACAAAACAGTCACTAAGGTTATCAAAAAG
63842362 TGACAAAACAGTCAC
1 TGACAAAACAGTCAC
63842377 CGATTAATAT
Statistics
Matches: 88, Mismatches: 14, Indels: 9
0.79 0.13 0.08
Matches are distributed among these distances:
29 6 0.07
30 35 0.40
31 44 0.50
32 3 0.03
ACGTcount: A:0.45, C:0.16, G:0.16, T:0.23
Consensus pattern (31 bp):
TGACAAAACAGTCACTAAGGTTATCAAAAAG
Found at i:63842313 original size:61 final size:61
Alignment explanation
Indices: 63842240--63842376 Score: 274
Period size: 61 Copynumber: 2.2 Consensus size: 61
63842230 TTAAGGTAGC
63842240 TGACAAAACAGTCACTTAATTTTGAAAAAGTGACATAGCAGTCACTAAGGTTATCAAAAAG
1 TGACAAAACAGTCACTTAATTTTGAAAAAGTGACATAGCAGTCACTAAGGTTATCAAAAAG
63842301 TGACAAAACAGTCACTTAATTTTGAAAAAGTGACATAGCAGTCACTAAGGTTATCAAAAAG
1 TGACAAAACAGTCACTTAATTTTGAAAAAGTGACATAGCAGTCACTAAGGTTATCAAAAAG
63842362 TGACAAAACAGTCAC
1 TGACAAAACAGTCAC
63842377 CGATTAATAT
Statistics
Matches: 76, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
61 76 1.00
ACGTcount: A:0.45, C:0.16, G:0.16, T:0.23
Consensus pattern (61 bp):
TGACAAAACAGTCACTTAATTTTGAAAAAGTGACATAGCAGTCACTAAGGTTATCAAAAAG
Found at i:63843334 original size:3 final size:3
Alignment explanation
Indices: 63843319--63843368 Score: 57
Period size: 3 Copynumber: 17.0 Consensus size: 3
63843309 CTATTTTTTC
* * * *
63843319 TCT TCT TCC TCT TCT TCT TCT TC- TCC TCT TCT TCT ACT TCT TCT TTT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
63843366 TCT
1 TCT
63843369 CTTTTTAAAC
Statistics
Matches: 39, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
2 2 0.05
3 37 0.95
ACGTcount: A:0.02, C:0.36, G:0.00, T:0.62
Consensus pattern (3 bp):
TCT
Found at i:63843362 original size:9 final size:8
Alignment explanation
Indices: 63843316--63843371 Score: 62
Period size: 9 Copynumber: 6.9 Consensus size: 8
63843306 TCTCTATTTT
63843316 TTCTCTTC
1 TTCTCTTC
63843324 TTCCTCTTC
1 TT-CTCTTC
63843333 TTCTTCTTC
1 TTC-TCTTC
*
63843342 TCCTCTTC
1 TTCTCTTC
63843350 TTCTACTTC
1 TTCT-CTTC
63843359 TTCT-TT-
1 TTCTCTTC
63843365 TTCTCTT
1 TTCTCTT
63843372 TTTAAACCCT
Statistics
Matches: 42, Mismatches: 2, Indels: 9
0.79 0.04 0.17
Matches are distributed among these distances:
6 4 0.10
7 4 0.10
8 11 0.26
9 23 0.55
ACGTcount: A:0.02, C:0.36, G:0.00, T:0.62
Consensus pattern (8 bp):
TTCTCTTC
Found at i:63843370 original size:23 final size:23
Alignment explanation
Indices: 63843313--63843371 Score: 75
Period size: 26 Copynumber: 2.4 Consensus size: 23
63843303 GCATCTCTAT
63843313 TTTTTCTCTTCTTCCTCTTCTTC
1 TTTTTCTCTTCTTCCTCTTCTTC
63843336 TTCTTCTCCTCTTCTT-CTACTTCTTC
1 TT-TT-T-CTCTTCTTCCT-CTTCTTC
63843362 TTTTTCTCTT
1 TTTTTCTCTT
63843372 TTTAAACCCT
Statistics
Matches: 32, Mismatches: 0, Indels: 8
0.80 0.00 0.20
Matches are distributed among these distances:
23 7 0.22
24 3 0.09
25 5 0.16
26 17 0.53
ACGTcount: A:0.02, C:0.34, G:0.00, T:0.64
Consensus pattern (23 bp):
TTTTTCTCTTCTTCCTCTTCTTC
Found at i:63843963 original size:8 final size:8
Alignment explanation
Indices: 63843950--63844006 Score: 57
Period size: 8 Copynumber: 7.4 Consensus size: 8
63843940 AGGAAATATT
63843950 TATTTTTA
1 TATTTTTA
63843958 TATTTTTA
1 TATTTTTA
*
63843966 GTGTTTTTA
1 -TATTTTTA
*
63843975 TAGTTTTA
1 TATTTTTA
63843983 TATTTTT-
1 TATTTTTA
*
63843990 TA-ATTT-
1 TATTTTTA
63843996 TATTTTTA
1 TATTTTTA
63844004 TAT
1 TAT
63844007 AAAAAAATTA
Statistics
Matches: 40, Mismatches: 6, Indels: 6
0.77 0.12 0.12
Matches are distributed among these distances:
6 5 0.12
7 5 0.12
8 23 0.57
9 7 0.17
ACGTcount: A:0.23, C:0.00, G:0.05, T:0.72
Consensus pattern (8 bp):
TATTTTTA
Found at i:63843989 original size:17 final size:16
Alignment explanation
Indices: 63843952--63844007 Score: 55
Period size: 17 Copynumber: 3.5 Consensus size: 16
63843942 GAAATATTTA
63843952 TTTTTATATTTT-TAGT
1 TTTTTATATTTTATA-T
63843968 GTTTTTATAGTTTTATAT
1 -TTTTTATA-TTTTATAT
63843986 TTTTTA-ATTTTAT-T
1 TTTTTATATTTTATAT
*
63844000 TTTATATA
1 TTTTTATA
63844008 AAAAAATTAT
Statistics
Matches: 35, Mismatches: 1, Indels: 8
0.80 0.02 0.18
Matches are distributed among these distances:
14 6 0.17
15 7 0.20
16 1 0.03
17 14 0.40
18 5 0.14
19 2 0.06
ACGTcount: A:0.23, C:0.00, G:0.05, T:0.71
Consensus pattern (16 bp):
TTTTTATATTTTATAT
Found at i:63848774 original size:22 final size:22
Alignment explanation
Indices: 63848746--63848790 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
63848736 TTTGTATTAC
63848746 TTGATTAAATTACAAGAATAAA
1 TTGATTAAATTACAAGAATAAA
63848768 TTGATTAAATTACAAGAATAAA
1 TTGATTAAATTACAAGAATAAA
63848790 T
1 T
63848791 ATTTAATATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.53, C:0.04, G:0.09, T:0.33
Consensus pattern (22 bp):
TTGATTAAATTACAAGAATAAA
Found at i:63853321 original size:19 final size:19
Alignment explanation
Indices: 63853299--63853336 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
63853289 AAATTATTTT
63853299 TATTATTTTAAAT-ATAAAA
1 TATT-TTTTAAATCATAAAA
*
63853318 TATTTTTTATATCATAAAA
1 TATTTTTTAAATCATAAAA
63853337 ACTAAAAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 7 0.41
19 10 0.59
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (19 bp):
TATTTTTTAAATCATAAAA
Found at i:63853844 original size:18 final size:18
Alignment explanation
Indices: 63853805--63853848 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
63853795 CTGTAATTAG
*
63853805 TTTAAATTTAATTTTTAA
1 TTTAAATTTAATTTTAAA
*
63853823 TTTAAATTTGA-TTTAAA
1 TTTAAATTTAATTTTAAA
63853840 TTTTAAATT
1 -TTTAAATT
63853849 ATTTAATGAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 5 0.22
18 18 0.78
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (18 bp):
TTTAAATTTAATTTTAAA
Found at i:63853865 original size:23 final size:23
Alignment explanation
Indices: 63853839--63853913 Score: 114
Period size: 23 Copynumber: 3.3 Consensus size: 23
63853829 TTTGATTTAA
* * *
63853839 ATTTTAAATTATTTAATGATAAT
1 ATTTAAAATTATTTATTAATAAT
63853862 ATTTAAAATTATTTATTAATAAT
1 ATTTAAAATTATTTATTAATAAT
*
63853885 ATTTAAAATTATTTATTCATAAT
1 ATTTAAAATTATTTATTAATAAT
63853908 ATTTAA
1 ATTTAA
63853914 GAAAAATCTA
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 48 1.00
ACGTcount: A:0.45, C:0.01, G:0.01, T:0.52
Consensus pattern (23 bp):
ATTTAAAATTATTTATTAATAAT
Found at i:63853982 original size:13 final size:13
Alignment explanation
Indices: 63853964--63853988 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
63853954 ATAATTAGTC
63853964 ACTACAACCAAAT
1 ACTACAACCAAAT
63853977 ACTACAACCAAA
1 ACTACAACCAAA
63853989 AACAGACTTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.32, G:0.00, T:0.12
Consensus pattern (13 bp):
ACTACAACCAAAT
Found at i:63854254 original size:18 final size:19
Alignment explanation
Indices: 63854219--63854254 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
63854209 TTTTATTTAC
63854219 AAATTTACTTTATTTGCTT
1 AAATTTACTTTATTTGCTT
*
63854238 AAATTTA-TTTTTTTGCT
1 AAATTTACTTTATTTGCT
63854255 ATTTTGAATC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 9 0.56
19 7 0.44
ACGTcount: A:0.25, C:0.08, G:0.06, T:0.61
Consensus pattern (19 bp):
AAATTTACTTTATTTGCTT
Found at i:63855651 original size:36 final size:36
Alignment explanation
Indices: 63855602--63855685 Score: 159
Period size: 36 Copynumber: 2.3 Consensus size: 36
63855592 TGAATTGTGT
63855602 CAAAACGACGTCGTTTTGGTGTCTGAAAATTAAGCC
1 CAAAACGACGTCGTTTTGGTGTCTGAAAATTAAGCC
*
63855638 CAAAACGATGTCGTTTTGGTGTCTGAAAATTAAGCC
1 CAAAACGACGTCGTTTTGGTGTCTGAAAATTAAGCC
63855674 CAAAACGACGTC
1 CAAAACGACGTC
63855686 ATATAGGACC
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
36 46 1.00
ACGTcount: A:0.32, C:0.20, G:0.21, T:0.26
Consensus pattern (36 bp):
CAAAACGACGTCGTTTTGGTGTCTGAAAATTAAGCC
Found at i:63856877 original size:44 final size:44
Alignment explanation
Indices: 63856754--63857438 Score: 431
Period size: 44 Copynumber: 15.2 Consensus size: 44
63856744 AACTTTTGAA
* * * * *
63856754 AGATAAGATTAGTAACTTCAATCGGTTCTACTGTAACTTCAGGG
1 AGATAAGATTTGTAACTTCAATCTGCTCCACTGCAACTTCAGGG
* * * * * *
63856798 AGAT-A-ATAT-TCATTTTAATCTGCTCCATTGCAACTTTAGGG
1 AGATAAGATTTGTAACTTCAATCTGCTCCACTGCAACTTCAGGG
**
63856839 AGATAAGATTTGTAACTTCAATCTGCTCCACTATAACTTCAGGG
1 AGATAAGATTTGTAACTTCAATCTGCTCCACTGCAACTTCAGGG
* *
63856883 AGGTAAGATTTGTAACTTCAATCTGCT-CATTTGCAACTTCAGGG
1 AGATAAGATTTGTAACTTCAATCTGCTCCA-CTGCAACTTCAGGG
* * ** * * *
63856927 AGATAAAATTCGCCAC-GCTAGATTTAGTCTGACCTATTGCAACTTCAGAGG
1 AGATAAGATTTGTAACTTC-A-ATCT-G-CT--CC-ACTGCAACTTCAG-GG
* * * * * *
63856978 -TATAGGATTTAGT---TTTAATCTACTCCGCTGCAACTTTAGGG
1 AGATAAGATTT-GTAACTTCAATCTGCTCCACTGCAACTTCAGGG
* * *
63857019 GGATAAGATTTGTAACTTGTAGTTTTAATCTGTTCCACTGCAACTTCAGGG
1 AGATAAGATTTGTAAC-------TTCAATCTGCTCCACTGCAACTTCAGGG
* * * * * *
63857070 AAATAAGGTTTGCTAGCTTTATTCTGCTCCACTACAACTTCAGGG
1 AGATAAGATTTG-TAACTTCAATCTGCTCCACTGCAACTTCAGGG
* * * *
63857115 AGATAAGGTTTGTAACTTGTAGCTTTAATTTGTTCCACTAC-ACTTCAGGG
1 AGATAAGATTTGTAAC-T-T--C---AATCTGCTCCACTGCAACTTCAGGG
* *
63857165 AAATAAGATTTGCTATCTTCAATCTGCTCCACTGCAACTTCAGGG
1 AGATAAGATTTG-TAACTTCAATCTGCTCCACTGCAACTTCAGGG
* * * * *
63857210 AGATGAGATTTGTAA-TTCCAATATGCTCCGCTACAACTTCAGTG
1 AGATAAGATTTGTAACTT-CAATCTGCTCCACTGCAACTTCAGGG
* * * *
63857254 AGATAAGATTTGTAACTTCAATCTGTTCTACTACAACTTCAGAG
1 AGATAAGATTTGTAACTTCAATCTGCTCCACTGCAACTTCAGGG
* * *
63857298 AGATAAGATTTGCTATCTTCAATCTGCTCTACTGCAACTTCAGAG
1 AGATAAGATTTG-TAACTTCAATCTGCTCCACTGCAACTTCAGGG
* * * * * *
63857343 AGAT-AGAATTGTAACTTTAATTTGCTCTATTGCAACTTCAGAG
1 AGATAAGATTTGTAACTTCAATCTGCTCCACTGCAACTTCAGGG
* * * * *
63857386 AGATAAAATTTGCTATCTTCAATCTACTCCATTGCAACTTTAGGG
1 AGATAAGATTTG-TAACTTCAATCTGCTCCACTGCAACTTCAGGG
63857431 AGATAAGA
1 AGATAAGA
63857439 CTCGCCACGA
Statistics
Matches: 502, Mismatches: 98, Indels: 81
0.74 0.14 0.12
Matches are distributed among these distances:
41 31 0.06
42 21 0.04
43 43 0.09
44 175 0.35
45 128 0.25
46 2 0.00
47 6 0.01
48 1 0.00
49 1 0.00
50 39 0.08
51 52 0.10
52 3 0.01
ACGTcount: A:0.30, C:0.19, G:0.18, T:0.34
Consensus pattern (44 bp):
AGATAAGATTTGTAACTTCAATCTGCTCCACTGCAACTTCAGGG
Found at i:63857063 original size:51 final size:51
Alignment explanation
Indices: 63856991--63857271 Score: 197
Period size: 45 Copynumber: 5.9 Consensus size: 51
63856981 AGGATTTAGT
* * * * ** *
63856991 TTTAATCTACTCCGCTGCAACTTTAGGGGGATAAGATTTGTAACTTGTAGT
1 TTTAATCTGCTCCACTACAACTTCAGGGAAATAAGATTTGTAACTTGTAGC
* * *
63857042 TTTAATCTGTTCCACTGCAACTTCAGGGAAATAAGGTTTG---C---TAGC
1 TTTAATCTGCTCCACTACAACTTCAGGGAAATAAGATTTGTAACTTGTAGC
* * *
63857087 TTTATTCTGCTCCACTACAACTTCAGGGAGATAAGGTTTGTAACTTGTAGC
1 TTTAATCTGCTCCACTACAACTTCAGGGAAATAAGATTTGTAACTTGTAGC
* * *
63857138 TTTAATTTGTTCCACTAC-ACTTCAGGGAAATAAGATTTG---C---TATC
1 TTTAATCTGCTCCACTACAACTTCAGGGAAATAAGATTTGTAACTTGTAGC
* * * *
63857182 TTCAATCTGCTCCACTGCAACTTCAGGGAGATGAGATTTGTAA--T-T--C
1 TTTAATCTGCTCCACTACAACTTCAGGGAAATAAGATTTGTAACTTGTAGC
* * * * *
63857228 --CAATATGCTCCGCTACAACTTCAGTGAGATAAGATTTGTAACTT
1 TTTAATCTGCTCCACTACAACTTCAGGGAAATAAGATTTGTAACTT
63857272 CAATCTGTTC
Statistics
Matches: 188, Mismatches: 29, Indels: 31
0.76 0.12 0.12
Matches are distributed among these distances:
44 53 0.28
45 58 0.31
46 2 0.01
47 1 0.01
48 3 0.02
50 19 0.10
51 52 0.28
ACGTcount: A:0.27, C:0.19, G:0.19, T:0.35
Consensus pattern (51 bp):
TTTAATCTGCTCCACTACAACTTCAGGGAAATAAGATTTGTAACTTGTAGC
Found at i:63857121 original size:45 final size:45
Alignment explanation
Indices: 63857045--63857438 Score: 341
Period size: 45 Copynumber: 8.7 Consensus size: 45
63857035 TTGTAGTTTT
* * * * *
63857045 AATCTGTTCCACTGCAACTTCAGGGAAATAAGGTTTGCTAGCTTT
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCTATCTTC
* * * * *
63857090 ATTCTGCTCCACTACAACTTCAGGGAGATAAGGTTTGTAACTTGTAGCTTT
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTG---C---TATCTTC
* * * *
63857141 AATTTGTTCCACTAC-ACTTCAGGGAAATAAGATTTGCTATCTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCTATCTTC
* *
63857185 AATCTGCTCCACTGCAACTTCAGGGAGATGAGATTTG-TAAT-TCC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCT-ATCTTC
* * * * *
63857229 AATATGCTCCGCTACAACTTCAGTGAGATAAGATTTG-TAACTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCTATCTTC
* * * *
63857273 AATCTGTTCTACTACAACTTCAGAGAGATAAGATTTGCTATCTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCTATCTTC
* * * * *
63857318 AATCTGCTCTACTGCAACTTCAGAGAGAT-AGAATTG-TAACTTT
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCTATCTTC
* * * * *
63857361 AATTTGCTCTATTGCAACTTCAGAGAGATAAAATTTGCTATCTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCTATCTTC
* * *
63857406 AATCTACTCCATTGCAACTTTAGGGAGATAAGA
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGA
63857439 CTCGCCACGA
Statistics
Matches: 290, Mismatches: 47, Indels: 24
0.80 0.13 0.07
Matches are distributed among these distances:
43 33 0.11
44 98 0.34
45 119 0.41
47 1 0.00
48 1 0.00
50 19 0.07
51 19 0.07
ACGTcount: A:0.30, C:0.20, G:0.17, T:0.34
Consensus pattern (45 bp):
AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCTATCTTC
Found at i:63857131 original size:96 final size:95
Alignment explanation
Indices: 63856994--63857309 Score: 333
Period size: 95 Copynumber: 3.4 Consensus size: 95
63856984 ATTTAGTTTT
* * * * * * *
63856994 AATCTACTCCGCTGCAACTTTAGGGGGATAAGATTTGTAACTTGTAGTTTTAATCTGTTCCACTG
1 AATCTGCTCCACTACAACTTCAGGGAGATAAGATTTGTAACTTGTAGCTTTAATCTGTTCCACTA
* *
63857059 CAACTTCAGGGAAATAAGGTTTGCTAGCTTT
66 C-ACTTCAGGGAAATAAGATTTGCTAGCTTC
* * *
63857090 ATTCTGCTCCACTACAACTTCAGGGAGATAAGGTTTGTAACTTGTAGCTTTAATTTGTTCCACTA
1 AATCTGCTCCACTACAACTTCAGGGAGATAAGATTTGTAACTTGTAGCTTTAATCTGTTCCACTA
*
63857155 CACTTCAGGGAAATAAGATTTGCTATCTTC
66 CACTTCAGGGAAATAAGATTTGCTAGCTTC
* * * * * *
63857185 AATCTGCTCCACTGCAACTTCAGGGAGATGAGATTTGTAA--T-T--C--CAATATGCTCCGCTA
1 AATCTGCTCCACTACAACTTCAGGGAGATAAGATTTGTAACTTGTAGCTTTAATCTGTTCCACTA
* * *
63857243 CAACTTCAGTGAGATAAGATTTG-TAACTTC
66 C-ACTTCAGGGAAATAAGATTTGCTAGCTTC
* * *
63857273 AATCTGTTCTACTACAACTTCAGAGAGATAAGATTTG
1 AATCTGCTCCACTACAACTTCAGGGAGATAAGATTTG
63857310 CTATCTTCAA
Statistics
Matches: 190, Mismatches: 29, Indels: 10
0.83 0.13 0.04
Matches are distributed among these distances:
88 50 0.26
89 19 0.10
90 1 0.01
92 1 0.01
93 1 0.01
95 62 0.33
96 56 0.29
ACGTcount: A:0.28, C:0.19, G:0.18, T:0.34
Consensus pattern (95 bp):
AATCTGCTCCACTACAACTTCAGGGAGATAAGATTTGTAACTTGTAGCTTTAATCTGTTCCACTA
CACTTCAGGGAAATAAGATTTGCTAGCTTC
Found at i:63857332 original size:133 final size:131
Alignment explanation
Indices: 63857094--63857410 Score: 366
Period size: 133 Copynumber: 2.3 Consensus size: 131
63857084 AGCTTTATTC
* * *
63857094 TGCTCCACTACAACTTCAGGGAGATAAGGTTTGTAACTTGTAGCTTTAATTTGTTCCACTACACT
1 TGCTCCACTACAACTTCAGAGAGATAAGATTTGTAAC-T-T--C---AATCTGTTCCACTACACT
* * *
63857159 TCAGGGAAATAAGATTTGCTATCTTCAATCTGCTCCACTGCAACTTCAGGGAGATGAGATTTGTA
59 TCAGAGAAATAAGATTTGCTATCTTCAATCTGCTCCACTGCAACTTCAGAGAGAT-AGAATTGTA
63857224 A-TTCCAATA
123 ACTT-CAATA
* * *
63857233 TGCTCCGCTACAACTTCAGTGAGATAAGATTTGTAACTTCAATCTGTTCTACTACAACTTCAGAG
1 TGCTCCACTACAACTTCAGAGAGATAAGATTTGTAACTTCAATCTGTTCCACTAC-ACTTCAGAG
* * *
63857298 AGATAAGATTTGCTATCTTCAATCTGCTCTACTGCAACTTCAGAGAGATAGAATTGTAACTTTAA
65 AAATAAGATTTGCTATCTTCAATCTGCTCCACTGCAACTTCAGAGAGATAGAATTGTAACTTCAA
*
63857363 TT
130 TA
* * * * *
63857365 TGCTCTATTGCAACTTCAGAGAGATAAAATTTGCTATCTTCAATCT
1 TGCTCCACTACAACTTCAGAGAGATAAGATTTG-TAACTTCAATCT
63857411 ACTCCATTGC
Statistics
Matches: 156, Mismatches: 19, Indels: 12
0.83 0.10 0.06
Matches are distributed among these distances:
132 52 0.33
133 67 0.43
135 1 0.01
137 1 0.01
138 1 0.01
139 34 0.22
ACGTcount: A:0.30, C:0.20, G:0.16, T:0.34
Consensus pattern (131 bp):
TGCTCCACTACAACTTCAGAGAGATAAGATTTGTAACTTCAATCTGTTCCACTACACTTCAGAGA
AATAAGATTTGCTATCTTCAATCTGCTCCACTGCAACTTCAGAGAGATAGAATTGTAACTTCAAT
A
Found at i:63874886 original size:39 final size:39
Alignment explanation
Indices: 63874682--63874904 Score: 200
Period size: 40 Copynumber: 5.6 Consensus size: 39
63874672 TTGAATGCTG
* * * * *
63874682 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTA-AGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGA-T-ACTAAA
**
63874722 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATAC-AAA
1 TCCGGGTTAAG-TCCCGAAGGCA-TTGTGCGAGATACTAAA
* *
63874761 TTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAA
1 -TCCGGGTTAAGTCCCGAAGG-CATTGTGCGAGATACTAAA
* * *
63874802 TTCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGATACTAAA
* * *
63874842 TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGATACTAAA
* * *
63874881 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
63874905 TGAACGAGGA
Statistics
Matches: 155, Mismatches: 20, Indels: 17
0.81 0.10 0.09
Matches are distributed among these distances:
39 40 0.26
40 101 0.65
41 13 0.08
42 1 0.01
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (39 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGATACTAAA
Found at i:63879099 original size:30 final size:30
Alignment explanation
Indices: 63879063--63879151 Score: 178
Period size: 30 Copynumber: 3.0 Consensus size: 30
63879053 GATAGTTGAT
63879063 CAGTTTGGGGTCTCTCGCCTCCCATTCACA
1 CAGTTTGGGGTCTCTCGCCTCCCATTCACA
63879093 CAGTTTGGGGTCTCTCGCCTCCCATTCACA
1 CAGTTTGGGGTCTCTCGCCTCCCATTCACA
63879123 CAGTTTGGGGTCTCTCGCCTCCCATTCAC
1 CAGTTTGGGGTCTCTCGCCTCCCATTCAC
63879152 CTTTGAGGTG
Statistics
Matches: 59, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 59 1.00
ACGTcount: A:0.12, C:0.37, G:0.20, T:0.30
Consensus pattern (30 bp):
CAGTTTGGGGTCTCTCGCCTCCCATTCACA
Found at i:63885636 original size:24 final size:24
Alignment explanation
Indices: 63885609--63885658 Score: 91
Period size: 24 Copynumber: 2.1 Consensus size: 24
63885599 ACATCATCTC
63885609 ACTATATCAATAACCATTTCATGA
1 ACTATATCAATAACCATTTCATGA
*
63885633 ACTATATTAATAACCATTTCATGA
1 ACTATATCAATAACCATTTCATGA
63885657 AC
1 AC
63885659 CCATGGTTCA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.42, C:0.20, G:0.04, T:0.34
Consensus pattern (24 bp):
ACTATATCAATAACCATTTCATGA
Found at i:63886890 original size:5 final size:5
Alignment explanation
Indices: 63886880--63886913 Score: 59
Period size: 5 Copynumber: 6.6 Consensus size: 5
63886870 TTAATTATAG
63886880 TAATA TAATA TAATA TAATA TAATAA TAATA TAA
1 TAATA TAATA TAATA TAATA TAAT-A TAATA TAA
63886914 CATTTACTTA
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
5 23 0.82
6 5 0.18
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (5 bp):
TAATA
Found at i:63893120 original size:32 final size:32
Alignment explanation
Indices: 63893063--63893123 Score: 86
Period size: 32 Copynumber: 1.9 Consensus size: 32
63893053 TGTTAGTTGT
*
63893063 AATATTTGTAAGTGTAAAATGAAACACTTTGA
1 AATATTTGTAAGTGTAAAATAAAACACTTTGA
* * *
63893095 AATATTTGTAATTGTACATTAAAACACTT
1 AATATTTGTAAGTGTAAAATAAAACACTT
63893124 AGAGCAGTCC
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
32 25 1.00
ACGTcount: A:0.43, C:0.08, G:0.11, T:0.38
Consensus pattern (32 bp):
AATATTTGTAAGTGTAAAATAAAACACTTTGA
Found at i:63893938 original size:17 final size:19
Alignment explanation
Indices: 63893902--63893940 Score: 55
Period size: 17 Copynumber: 2.1 Consensus size: 19
63893892 CTTTTTTAAT
63893902 TAAAGAAAAATGTAGAAAAA
1 TAAAGAAAAATG-AGAAAAA
63893922 TAAAG-AAAATG-GAAAAA
1 TAAAGAAAAATGAGAAAAA
63893939 TA
1 TA
63893941 GATCTAACCT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 8 0.42
19 6 0.32
20 5 0.26
ACGTcount: A:0.69, C:0.00, G:0.15, T:0.15
Consensus pattern (19 bp):
TAAAGAAAAATGAGAAAAA
Found at i:63894179 original size:22 final size:22
Alignment explanation
Indices: 63894154--63894210 Score: 114
Period size: 22 Copynumber: 2.6 Consensus size: 22
63894144 TTTTCTCGTT
63894154 AGGCTTTAGTGTCACGACACCC
1 AGGCTTTAGTGTCACGACACCC
63894176 AGGCTTTAGTGTCACGACACCC
1 AGGCTTTAGTGTCACGACACCC
63894198 AGGCTTTAGTGTC
1 AGGCTTTAGTGTC
63894211 TTAACCTTTA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 35 1.00
ACGTcount: A:0.21, C:0.28, G:0.25, T:0.26
Consensus pattern (22 bp):
AGGCTTTAGTGTCACGACACCC
Found at i:63900147 original size:5 final size:5
Alignment explanation
Indices: 63900137--63900173 Score: 74
Period size: 5 Copynumber: 7.4 Consensus size: 5
63900127 GGAAAATATT
63900137 TAAAA TAAAA TAAAA TAAAA TAAAA TAAAA TAAAA TA
1 TAAAA TAAAA TAAAA TAAAA TAAAA TAAAA TAAAA TA
63900174 TTACAACAGG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 32 1.00
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (5 bp):
TAAAA
Found at i:63900415 original size:25 final size:25
Alignment explanation
Indices: 63900381--63900433 Score: 106
Period size: 25 Copynumber: 2.1 Consensus size: 25
63900371 TTCAAGATAA
63900381 CTTAGTGAGCTTTATTACAAAATAC
1 CTTAGTGAGCTTTATTACAAAATAC
63900406 CTTAGTGAGCTTTATTACAAAATAC
1 CTTAGTGAGCTTTATTACAAAATAC
63900431 CTT
1 CTT
63900434 GGAGGATAGT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.34, C:0.17, G:0.11, T:0.38
Consensus pattern (25 bp):
CTTAGTGAGCTTTATTACAAAATAC
Found at i:63902237 original size:27 final size:27
Alignment explanation
Indices: 63902206--63902257 Score: 95
Period size: 27 Copynumber: 1.9 Consensus size: 27
63902196 TAATAAAAAA
63902206 TAGCATTGAAGGAAGAAGAAGAATCCT
1 TAGCATTGAAGGAAGAAGAAGAATCCT
*
63902233 TAGCATTGAAGGCAGAAGAAGAATC
1 TAGCATTGAAGGAAGAAGAAGAATC
63902258 ATTCTCACAC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.44, C:0.12, G:0.27, T:0.17
Consensus pattern (27 bp):
TAGCATTGAAGGAAGAAGAAGAATCCT
Found at i:63907335 original size:22 final size:20
Alignment explanation
Indices: 63907277--63907328 Score: 77
Period size: 22 Copynumber: 2.5 Consensus size: 20
63907267 ATCACCCCAG
*
63907277 TTTTATTTTATTTTATTTAT
1 TTTTATTTTATATTATTTAT
63907297 TTTTAATTGTTATATTATTTAT
1 TTTT-ATT-TTATATTATTTAT
63907319 TTTTATTTTA
1 TTTTATTTTA
63907329 CTAATTAATT
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
20 7 0.24
21 6 0.21
22 16 0.55
ACGTcount: A:0.23, C:0.00, G:0.02, T:0.75
Consensus pattern (20 bp):
TTTTATTTTATATTATTTAT
Found at i:63907383 original size:17 final size:17
Alignment explanation
Indices: 63907361--63907406 Score: 65
Period size: 17 Copynumber: 2.6 Consensus size: 17
63907351 ATTCTTATAC
63907361 TTATATTTTTAATTTTT
1 TTATATTTTTAATTTTT
*
63907378 TTATATTTTAAATTTTT
1 TTATATTTTTAATTTTT
*
63907395 TATATACTTTTA
1 T-TATATTTTTA
63907407 TTATTATTAT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
17 17 0.68
18 8 0.32
ACGTcount: A:0.28, C:0.02, G:0.00, T:0.70
Consensus pattern (17 bp):
TTATATTTTTAATTTTT
Found at i:63907388 original size:16 final size:16
Alignment explanation
Indices: 63907361--63907399 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
63907351 ATTCTTATAC
*
63907361 TTATATTTTTAATTTTT
1 TTATA-TTTTAAATTTT
63907378 TTATATTTTAAATTTT
1 TTATATTTTAAATTTT
63907394 TTATAT
1 TTATAT
63907400 ACTTTTATTA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
16 16 0.76
17 5 0.24
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (16 bp):
TTATATTTTAAATTTT
Found at i:63907470 original size:22 final size:21
Alignment explanation
Indices: 63907402--63907470 Score: 68
Period size: 22 Copynumber: 3.1 Consensus size: 21
63907392 TTTTATATAC
63907402 TTTTATTAT-TATTATTTTTATT
1 TTTTATT-TCTATT-TTTTTATT
* *
63907424 TTGCTATTTCTATTTTTTTCTT
1 TT-TTATTTCTATTTTTTTATT
*
63907446 TTTTCTTTCGTATTTTTTTATT
1 TTTTATTTC-TATTTTTTTATT
63907468 TTT
1 TTT
63907471 ACTATTATCA
Statistics
Matches: 39, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
21 5 0.13
22 26 0.67
23 8 0.21
ACGTcount: A:0.13, C:0.07, G:0.03, T:0.77
Consensus pattern (21 bp):
TTTTATTTCTATTTTTTTATT
Found at i:63907470 original size:23 final size:22
Alignment explanation
Indices: 63907411--63907476 Score: 71
Period size: 22 Copynumber: 2.9 Consensus size: 22
63907401 CTTTTATTAT
*
63907411 TATTATTTTTATTTTGCTATTTC
1 TATT-TTTTTATTTTTCTATTTC
* *
63907434 TATTTTTTTCTTTTT-TCTTTC
1 TATTTTTTTATTTTTCTATTTC
63907455 GTATTTTTTTATTTTTACTATT
1 -TATTTTTTTATTTTT-CTATT
63907477 ATCATTACAA
Statistics
Matches: 35, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
21 5 0.14
22 23 0.66
23 4 0.11
24 3 0.09
ACGTcount: A:0.14, C:0.09, G:0.03, T:0.74
Consensus pattern (22 bp):
TATTTTTTTATTTTTCTATTTC
Found at i:63907524 original size:3 final size:3
Alignment explanation
Indices: 63907518--63907560 Score: 65
Period size: 3 Copynumber: 15.3 Consensus size: 3
63907508 ATTATTGAGT
63907518 TTA TTA TTA TT- TTA TTA TTA TTA TTA TTA TT- TTA TTA TT- TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
63907561 CGTTCTTTTT
Statistics
Matches: 37, Mismatches: 0, Indels: 6
0.86 0.00 0.14
Matches are distributed among these distances:
2 6 0.16
3 31 0.84
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (3 bp):
TTA
Found at i:63907540 original size:17 final size:17
Alignment explanation
Indices: 63907518--63907560 Score: 63
Period size: 17 Copynumber: 2.6 Consensus size: 17
63907508 ATTATTGAGT
63907518 TTATTATTATTTTATTA
1 TTATTATTATTTTATTA
63907535 TTATTATTATTATT-TTA
1 TTATTATTATT-TTATTA
63907552 TTATT-TTAT
1 TTATTATTAT
63907561 CGTTCTTTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
16 4 0.16
17 19 0.76
18 2 0.08
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (17 bp):
TTATTATTATTTTATTA
Found at i:63907703 original size:41 final size:41
Alignment explanation
Indices: 63907646--63907736 Score: 164
Period size: 41 Copynumber: 2.2 Consensus size: 41
63907636 TTTTGAAAGA
*
63907646 TTTATGATTGTTTCTAATCAAGTTATAACCCCTTAATTTTC
1 TTTATTATTGTTTCTAATCAAGTTATAACCCCTTAATTTTC
63907687 TTTATTATTGTTTCTAATCAAGTTATAACCCCTTAATTTTC
1 TTTATTATTGTTTCTAATCAAGTTATAACCCCTTAATTTTC
*
63907728 ATTATTATT
1 TTTATTATT
63907737 TGTGTTTATT
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
41 48 1.00
ACGTcount: A:0.27, C:0.15, G:0.05, T:0.52
Consensus pattern (41 bp):
TTTATTATTGTTTCTAATCAAGTTATAACCCCTTAATTTTC
Found at i:63908612 original size:12 final size:12
Alignment explanation
Indices: 63908591--63908622 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
63908581 TTGTTCTCAA
63908591 AAAAAAAAAAAG
1 AAAAAAAAAAAG
*
63908603 AAAAAGAAAAAG
1 AAAAAAAAAAAG
63908615 AAAAAAAA
1 AAAAAAAA
63908623 GGTGAAAAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.91, C:0.00, G:0.09, T:0.00
Consensus pattern (12 bp):
AAAAAAAAAAAG
Found at i:63909503 original size:30 final size:30
Alignment explanation
Indices: 63909467--63909527 Score: 104
Period size: 30 Copynumber: 2.0 Consensus size: 30
63909457 GAGTTTTCAG
*
63909467 GATCCACACAGGCAGGGCACACGCCCATGT
1 GATCCACACAGGCAGGCCACACGCCCATGT
*
63909497 GATCCACACGGGCAGGCCACACGCCCATGT
1 GATCCACACAGGCAGGCCACACGCCCATGT
63909527 G
1 G
63909528 CCAGTCTGTG
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.25, C:0.38, G:0.28, T:0.10
Consensus pattern (30 bp):
GATCCACACAGGCAGGCCACACGCCCATGT
Found at i:63922605 original size:24 final size:24
Alignment explanation
Indices: 63922576--63922623 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
63922566 TCAAATATTG
*
63922576 GAACACCAATTCCAAAATGCAAAA
1 GAACACCAATTCCAAAATCCAAAA
63922600 GAACACCAATTCCAAAATCCAAAA
1 GAACACCAATTCCAAAATCCAAAA
63922624 ATAAAGAGAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.54, C:0.27, G:0.06, T:0.12
Consensus pattern (24 bp):
GAACACCAATTCCAAAATCCAAAA
Found at i:63930313 original size:142 final size:142
Alignment explanation
Indices: 63930057--63930346 Score: 562
Period size: 142 Copynumber: 2.0 Consensus size: 142
63930047 ATTAATTTTT
63930057 ATAATTTATTGAGTGATTAGATGCATGTGTTAGAATATCGATAGAAAATTTCATGAATTGCATGT
1 ATAATTTATTGAGTGATTAGATGCATGTGTTAGAATATCGATAGAAAATTTCATGAATTGCATGT
63930122 CTAATTTGCCTATTAGGACTTAATTGCAAAAGTTGATAAATATGAGTTTTAGATGTTAAAGGATT
66 CTAATTTGCCTATTAGGACTTAATTGCAAAAGTTGATAAATATGAGTTTTAGATGTTAAAGGATT
63930187 TAATTGAAGAGC
131 TAATTGAAGAGC
*
63930199 ATAATTTATTGAGTGATTAGATGCATGTGTTAGAATATCGATAGAAAATTTCATGAATTGCGTGT
1 ATAATTTATTGAGTGATTAGATGCATGTGTTAGAATATCGATAGAAAATTTCATGAATTGCATGT
*
63930264 CTAATTTGCCTATTAGGACTTAATTGCAAAAGTTGATTAATATGAGTTTTAGATGTTAAAGGATT
66 CTAATTTGCCTATTAGGACTTAATTGCAAAAGTTGATAAATATGAGTTTTAGATGTTAAAGGATT
63930329 TAATTGAAGAGC
131 TAATTGAAGAGC
63930341 ATAATT
1 ATAATT
63930347 GAAGTAGAGG
Statistics
Matches: 146, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
142 146 1.00
ACGTcount: A:0.36, C:0.07, G:0.20, T:0.38
Consensus pattern (142 bp):
ATAATTTATTGAGTGATTAGATGCATGTGTTAGAATATCGATAGAAAATTTCATGAATTGCATGT
CTAATTTGCCTATTAGGACTTAATTGCAAAAGTTGATAAATATGAGTTTTAGATGTTAAAGGATT
TAATTGAAGAGC
Found at i:63939473 original size:26 final size:26
Alignment explanation
Indices: 63939430--63939511 Score: 137
Period size: 26 Copynumber: 3.2 Consensus size: 26
63939420 TGAAATTCGC
*
63939430 ATCATGGAACATTTACCTAACCCATT
1 ATCATGAAACATTTACCTAACCCATT
*
63939456 ATCTTGAAACATTTACCTAACCCATT
1 ATCATGAAACATTTACCTAACCCATT
*
63939482 ATCATGGAACATTTACCTAACCCATT
1 ATCATGAAACATTTACCTAACCCATT
63939508 ATCA
1 ATCA
63939512 ATTTGTATCA
Statistics
Matches: 52, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 52 1.00
ACGTcount: A:0.35, C:0.27, G:0.06, T:0.32
Consensus pattern (26 bp):
ATCATGAAACATTTACCTAACCCATT
Found at i:63946495 original size:26 final size:26
Alignment explanation
Indices: 63946459--63946540 Score: 146
Period size: 26 Copynumber: 3.2 Consensus size: 26
63946449 TGAAATTCGC
63946459 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
63946485 ATCATGAAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
63946511 ATCATGGAGCATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
63946537 ATCA
1 ATCA
63946541 ATTTGTATCA
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 53 1.00
ACGTcount: A:0.35, C:0.27, G:0.07, T:0.30
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:63948960 original size:56 final size:56
Alignment explanation
Indices: 63948864--63949129 Score: 325
Period size: 56 Copynumber: 4.8 Consensus size: 56
63948854 ATGTATATGA
* * * * * * *
63948864 GGCATCGACATGTGATTCTGATATATGTGTGCGAGAAAGACCATGTTTTATACATC
1 GGCATCAATATGTGATTCCGATATATGTGTGCGAGTAAGACCACGTTTTATACGTT
** * * *
63948920 AACATCAATATGTGATTCCGATATATATGTGCAAGTAAGACCACGTTTTATATGTT
1 GGCATCAATATGTGATTCCGATATATGTGTGCGAGTAAGACCACGTTTTATACGTT
* * * * *
63948976 GGCATCGATATGTGATTCTGATATATCTGTGCGAGTAAGACCATGTTTTATATGTT
1 GGCATCAATATGTGATTCCGATATATGTGTGCGAGTAAGACCACGTTTTATACGTT
* * *
63949032 GGCATCAATATGTGATCCCGATATATGTGTGTGAGTAAGACCGCGTTTTATACGTT
1 GGCATCAATATGTGATTCCGATATATGTGTGCGAGTAAGACCACGTTTTATACGTT
* * *
63949088 GGCATCGATATGTGACTCCAATATATGTGTGCGAGTAAGACC
1 GGCATCAATATGTGATTCCGATATATGTGTGCGAGTAAGACC
63949130 CTGTCTGGGA
Statistics
Matches: 178, Mismatches: 32, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
56 178 1.00
ACGTcount: A:0.28, C:0.15, G:0.23, T:0.34
Consensus pattern (56 bp):
GGCATCAATATGTGATTCCGATATATGTGTGCGAGTAAGACCACGTTTTATACGTT
Found at i:63949001 original size:112 final size:112
Alignment explanation
Indices: 63948864--63949129 Score: 379
Period size: 112 Copynumber: 2.4 Consensus size: 112
63948854 ATGTATATGA
* *
63948864 GGCATCGACATGTGATTCTGATATATGTGTGCGAGAAAGACCATGTTTTATACATCAACATCAAT
1 GGCATCGATATGTGATTCTGATATATGTGTGCGAGTAAGACCATGTTTTATACATCAACATCAAT
* *
63948929 ATGTGATTCCGATATATATGTGCAAGTAAGACCACGTTTTATATGTT
66 ATGTGATCCCGATATATATGTGCAAGTAAGACCACGTTTTATACGTT
* ** ***
63948976 GGCATCGATATGTGATTCTGATATATCTGTGCGAGTAAGACCATGTTTTATATGTTGGCATCAAT
1 GGCATCGATATGTGATTCTGATATATGTGTGCGAGTAAGACCATGTTTTATACATCAACATCAAT
* ** *
63949041 ATGTGATCCCGATATATGTGTGTGAGTAAGACCGCGTTTTATACGTT
66 ATGTGATCCCGATATATATGTGCAAGTAAGACCACGTTTTATACGTT
* **
63949088 GGCATCGATATGTGACTCCAATATATGTGTGCGAGTAAGACC
1 GGCATCGATATGTGATTCTGATATATGTGTGCGAGTAAGACC
63949130 CTGTCTGGGA
Statistics
Matches: 136, Mismatches: 18, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
112 136 1.00
ACGTcount: A:0.28, C:0.15, G:0.23, T:0.34
Consensus pattern (112 bp):
GGCATCGATATGTGATTCTGATATATGTGTGCGAGTAAGACCATGTTTTATACATCAACATCAAT
ATGTGATCCCGATATATATGTGCAAGTAAGACCACGTTTTATACGTT
Found at i:63949147 original size:56 final size:55
Alignment explanation
Indices: 63948864--63949159 Score: 285
Period size: 56 Copynumber: 5.3 Consensus size: 55
63948854 ATGTATATGA
* * * * * * *
63948864 GGCATCGACATGTGATTCTGATATATGTGTGCGAGAAAGACCATGTTTTATACATC
1 GGCATCAATATGTGA-TCCGATATATGTGTGCGAGTAAGACCCTGTTTTATACGTT
** * * *
63948920 AACATCAATATGTGATTCCGATATATATGTGCAAGTAAGACCAC-GTTTTATATGTT
1 GGCATCAATATGTGA-TCCGATATATGTGTGCGAGTAAGACC-CTGTTTTATACGTT
* * * * *
63948976 GGCATCGATATGTGATTCTGATATATCTGTGCGAGTAAGACCATGTTTTATATGTT
1 GGCATCAATATGTGA-TCCGATATATGTGTGCGAGTAAGACCCTGTTTTATACGTT
*
63949032 GGCATCAATATGTGATCCCGATATATGTGTGTGAGTAAGACCGC-GTTTTATACGTT
1 GGCATCAATATGTGAT-CCGATATATGTGTGCGAGTAAGACC-CTGTTTTATACGTT
* * **
63949088 GGCATCGATATGTGACTCCAATATATGTGTGCGAGTAAGACCCTGTCTGGGATA-G-T
1 GGCATCAATATGTGA-TCCGATATATGTGTGCGAGTAAGACCCTGT-T-TTATACGTT
63949144 GGCATCAATATGTGAT
1 GGCATCAATATGTGAT
63949160 TACATGTAAG
Statistics
Matches: 201, Mismatches: 31, Indels: 17
0.81 0.12 0.07
Matches are distributed among these distances:
55 3 0.01
56 192 0.96
57 3 0.01
58 3 0.01
ACGTcount: A:0.28, C:0.15, G:0.23, T:0.34
Consensus pattern (55 bp):
GGCATCAATATGTGATCCGATATATGTGTGCGAGTAAGACCCTGTTTTATACGTT
Found at i:63949147 original size:112 final size:112
Alignment explanation
Indices: 63948922--63949159 Score: 327
Period size: 112 Copynumber: 2.1 Consensus size: 112
63948912 TATACATCAA
* *
63948922 CATCAATATGTGATTCCGATATATATGTGCAAGTAAGACCACGTTTTATATGTTGGCATCGATAT
1 CATCAATATGTGATCCCGATATATATGTGCAAGTAAGACCACGTTTTATACGTTGGCATCGATAT
* ** **
63948987 GTGATTCTGATATATCTGTGCGAGTAAGACCATGTTTTATATGTTGG
66 GTGACTCCAATATATCTGTGCGAGTAAGACCATGTTGGATATGTTGG
* ** *
63949034 CATCAATATGTGATCCCGATATATGTGTGTGAGTAAGACCGCGTTTTATACGTTGGCATCGATAT
1 CATCAATATGTGATCCCGATATATATGTGCAAGTAAGACCACGTTTTATACGTTGGCATCGATAT
* *
63949099 GTGACTCCAATATATGTGTGCGAGTAAGACCCTGTCTGGGATA-G-TGG
66 GTGACTCCAATATATCTGTGCGAGTAAGACCATGT-T-GGATATGTTGG
63949146 CATCAATATGTGAT
1 CATCAATATGTGAT
63949160 TACATGTAAG
Statistics
Matches: 111, Mismatches: 13, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
112 106 0.95
113 2 0.02
114 3 0.03
ACGTcount: A:0.27, C:0.15, G:0.24, T:0.34
Consensus pattern (112 bp):
CATCAATATGTGATCCCGATATATATGTGCAAGTAAGACCACGTTTTATACGTTGGCATCGATAT
GTGACTCCAATATATCTGTGCGAGTAAGACCATGTTGGATATGTTGG
Found at i:63950536 original size:12 final size:12
Alignment explanation
Indices: 63950519--63950544 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
63950509 AATAAAACAA
63950519 AAGAAAATAAAT
1 AAGAAAATAAAT
63950531 AAGAAAATAAAT
1 AAGAAAATAAAT
63950543 AA
1 AA
63950545 ATATTTATTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.77, C:0.00, G:0.08, T:0.15
Consensus pattern (12 bp):
AAGAAAATAAAT
Found at i:63952339 original size:27 final size:25
Alignment explanation
Indices: 63952274--63952339 Score: 62
Period size: 27 Copynumber: 2.5 Consensus size: 25
63952264 ATCTATCATA
*
63952274 ATATTTTTTTATATATTATATATTT
1 ATATATTTTTATATATTATATATTT
*
63952299 TTATATTATATTATATAATT-TATATTACT
1 ATATATT-T-TTATAT-ATTATATATT--T
63952328 ATATATTTTTAT
1 ATATATTTTTAT
63952340 TTGTAAATTA
Statistics
Matches: 33, Mismatches: 3, Indels: 8
0.75 0.07 0.18
Matches are distributed among these distances:
25 5 0.15
26 1 0.03
27 16 0.48
28 4 0.12
29 7 0.21
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.64
Consensus pattern (25 bp):
ATATATTTTTATATATTATATATTT
Found at i:63952366 original size:43 final size:44
Alignment explanation
Indices: 63952283--63952370 Score: 106
Period size: 43 Copynumber: 2.0 Consensus size: 44
63952273 AATATTTTTT
* * * *
63952283 TATATATTATATATTTTTATATTATATTATATAATTTATATTAC
1 TATATATTATATATTTGTAAATTATATTATACAATATATATTAC
*
63952327 TATATATT-TTTATTTGTAAATTATATTATACACAATATATATTA
1 TATATATTATATATTTGTAAATTATATTAT--ACAATATATATTA
63952371 TACTATACTT
Statistics
Matches: 37, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
43 18 0.49
44 8 0.22
45 11 0.30
ACGTcount: A:0.40, C:0.03, G:0.01, T:0.56
Consensus pattern (44 bp):
TATATATTATATATTTGTAAATTATATTATACAATATATATTAC
Found at i:63955224 original size:36 final size:36
Alignment explanation
Indices: 63955182--63955394 Score: 115
Period size: 36 Copynumber: 5.7 Consensus size: 36
63955172 AAAGTGTGCT
63955182 CAGCACTAGTTGAATAAACCGACAATGAGTTGCGCC
1 CAGCACTAGTTGAATAAACCGACAATGAGTTGCGCC
* * ** * * *
63955218 TAGCACTAG-TCAAGTAAACTAACGATATCAAATGTGTGCC
1 CAGCACTAGTTGAA-TAAACCGAC-A-AT-GAGT-TGCGCC
** *
63955258 CAGCACTAGTTGAATGTACCGATAATGAGTTGCGCCC
1 CAGCACTAGTTGAATAAACCGACAATGAGTTGCG-CC
** * * *
63955295 CA-CACTAGTTGGGTAAACCGACGATATCAAATGTGTGCC
1 CAGCACTAGTTGAATAAACCGAC-A-AT-GAGT-TGCGCC
* ** * *
63955334 TAGCACTAGTTGAATTTACCAACAATGAGTTGCCCC
1 CAGCACTAGTTGAATAAACCGACAATGAGTTGCGCC
* * *
63955370 CAACACTAGTTAAATAAATCGACAA
1 CAGCACTAGTTGAATAAACCGACAA
63955395 ATACATACAT
Statistics
Matches: 123, Mismatches: 42, Indels: 24
0.65 0.22 0.13
Matches are distributed among these distances:
35 3 0.02
36 55 0.45
37 10 0.08
38 8 0.07
39 9 0.07
40 35 0.28
41 3 0.02
ACGTcount: A:0.34, C:0.23, G:0.19, T:0.23
Consensus pattern (36 bp):
CAGCACTAGTTGAATAAACCGACAATGAGTTGCGCC
Found at i:63955380 original size:76 final size:76
Alignment explanation
Indices: 63955156--63955387 Score: 279
Period size: 76 Copynumber: 3.1 Consensus size: 76
63955146 GCTAATCGGA
* * * * *
63955156 TAAACTGATGATATCAAAAGTGTG-CTCAGCACTAGTTGAATAAACCGACAATGAGTTGCGCCTA
1 TAAACTGACGATATCAAATGTGTGCCT-AGCACTAGTTGAATATACCGACAATGAGTTGCCCCCA
* *
63955220 GCACTAGTCAAG
65 ACACTAGTTAAG
* * * *
63955232 TAAACTAACGATATCAAATGTGTGCCCAGCACTAGTTGAATGTACCGATAATGAGTTGCGCCCC-
1 TAAACTGACGATATCAAATGTGTGCCTAGCACTAGTTGAATATACCGACAATGAGTTGC-CCCCA
**
63955296 ACACTAGTTGGG
65 ACACTAGTTAAG
* * *
63955308 TAAACCGACGATATCAAATGTGTGCCTAGCACTAGTTGAATTTACCAACAATGAGTTGCCCCCAA
1 TAAACTGACGATATCAAATGTGTGCCTAGCACTAGTTGAATATACCGACAATGAGTTGCCCCCAA
*
63955373 CACTAGTTAAA
66 CACTAGTTAAG
63955384 TAAA
1 TAAA
63955388 TCGACAAATA
Statistics
Matches: 131, Mismatches: 22, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
75 4 0.03
76 124 0.95
77 3 0.02
ACGTcount: A:0.34, C:0.22, G:0.19, T:0.25
Consensus pattern (76 bp):
TAAACTGACGATATCAAATGTGTGCCTAGCACTAGTTGAATATACCGACAATGAGTTGCCCCCAA
CACTAGTTAAG
Found at i:63958247 original size:15 final size:15
Alignment explanation
Indices: 63958227--63958256 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
63958217 CAGCAACAAT
63958227 TAACCAACAACCCAG
1 TAACCAACAACCCAG
63958242 TAACCAACAACCCAG
1 TAACCAACAACCCAG
63958257 CAATAATTAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.47, C:0.40, G:0.07, T:0.07
Consensus pattern (15 bp):
TAACCAACAACCCAG
Found at i:63964502 original size:19 final size:17
Alignment explanation
Indices: 63964478--63964519 Score: 57
Period size: 17 Copynumber: 2.4 Consensus size: 17
63964468 TGGGCCTCGA
63964478 TGGGCCGAAATGGGCTGTG
1 TGGGCC-AAATGGGCT-TG
*
63964497 TGGGCCCAATGGGCTTG
1 TGGGCCAAATGGGCTTG
63964514 TGGGCC
1 TGGGCC
63964520 CACACGGATA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 8 0.36
18 8 0.36
19 6 0.27
ACGTcount: A:0.12, C:0.21, G:0.45, T:0.21
Consensus pattern (17 bp):
TGGGCCAAATGGGCTTG
Found at i:63964517 original size:17 final size:18
Alignment explanation
Indices: 63964486--63964521 Score: 65
Period size: 17 Copynumber: 2.1 Consensus size: 18
63964476 GATGGGCCGA
63964486 AATGGGCTGTGTGGGCCC
1 AATGGGCTGTGTGGGCCC
63964504 AATGGGCT-TGTGGGCCC
1 AATGGGCTGTGTGGGCCC
63964521 A
1 A
63964522 CACGGATAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 10 0.56
18 8 0.44
ACGTcount: A:0.14, C:0.22, G:0.42, T:0.22
Consensus pattern (18 bp):
AATGGGCTGTGTGGGCCC
Found at i:63964862 original size:27 final size:27
Alignment explanation
Indices: 63964768--63964856 Score: 133
Period size: 27 Copynumber: 3.3 Consensus size: 27
63964758 CCTAGTTTAC
* * * *
63964768 AAAATTACTGAAATACCCCTGTATGGT
1 AAAATGACTGTAATGCCCCTGTAGGGT
*
63964795 GAAATGACTGTAATGCCCCTGTAGGGT
1 AAAATGACTGTAATGCCCCTGTAGGGT
63964822 AAAATGACTGTAATGCCCCTGTAGGGT
1 AAAATGACTGTAATGCCCCTGTAGGGT
63964849 AAAATGAC
1 AAAATGAC
63964857 CATAATACCC
Statistics
Matches: 56, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 56 1.00
ACGTcount: A:0.34, C:0.18, G:0.22, T:0.26
Consensus pattern (27 bp):
AAAATGACTGTAATGCCCCTGTAGGGT
Found at i:63964871 original size:27 final size:27
Alignment explanation
Indices: 63964768--63964880 Score: 127
Period size: 27 Copynumber: 4.2 Consensus size: 27
63964758 CCTAGTTTAC
* * *
63964768 AAAATTACTGAAATACCCCTGTATGGT
1 AAAATGACTGTAATACCCCTGTAGGGT
* *
63964795 GAAATGACTGTAATGCCCCTGTAGGGT
1 AAAATGACTGTAATACCCCTGTAGGGT
*
63964822 AAAATGACTGTAATGCCCCTGTAGGGT
1 AAAATGACTGTAATACCCCTGTAGGGT
** * * *
63964849 AAAATGACCATAATACCCTTGTATGAT
1 AAAATGACTGTAATACCCCTGTAGGGT
63964876 AAAAT
1 AAAAT
63964881 AATGATTATG
Statistics
Matches: 74, Mismatches: 12, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 74 1.00
ACGTcount: A:0.35, C:0.18, G:0.19, T:0.27
Consensus pattern (27 bp):
AAAATGACTGTAATACCCCTGTAGGGT
Found at i:63965073 original size:27 final size:27
Alignment explanation
Indices: 63965043--63965102 Score: 75
Period size: 27 Copynumber: 2.2 Consensus size: 27
63965033 TGTCATATTC
*
63965043 ACTGTTATTGGTGGCGATGCCACAATT
1 ACTGTTACTGGTGGCGATGCCACAATT
* ** *
63965070 ACTGATACTGGTGGCTTTGCCACATTT
1 ACTGTTACTGGTGGCGATGCCACAATT
63965097 ACTGTT
1 ACTGTT
63965103 TCTAGCAGCT
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.20, C:0.20, G:0.23, T:0.37
Consensus pattern (27 bp):
ACTGTTACTGGTGGCGATGCCACAATT
Found at i:63973395 original size:14 final size:13
Alignment explanation
Indices: 63973376--63973431 Score: 53
Period size: 14 Copynumber: 4.1 Consensus size: 13
63973366 AAAATATGTA
63973376 ATAATATAAATCAT
1 ATAATATAAAT-AT
63973390 ATAATAATAAAATAT
1 ATAAT-AT-AAATAT
63973405 ATGTAATA-AAATAT
1 A--TAATATAAATAT
63973419 ATAATAT-AATAT
1 ATAATATAAATAT
63973431 A
1 A
63973432 AGAAGAATAT
Statistics
Matches: 37, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
12 11 0.30
14 12 0.32
15 5 0.14
16 5 0.14
17 4 0.11
ACGTcount: A:0.61, C:0.02, G:0.02, T:0.36
Consensus pattern (13 bp):
ATAATATAAATAT
Found at i:63973396 original size:17 final size:15
Alignment explanation
Indices: 63973366--63973424 Score: 75
Period size: 14 Copynumber: 3.9 Consensus size: 15
63973356 TTTACAAATA
*
63973366 AAAATATGTAATAAT
1 AAAATATATAATAAT
63973381 ATAAATCATATAATAAT
1 A-AAAT-ATATAATAAT
*
63973398 AAAATATAT-GTAAT
1 AAAATATATAATAAT
63973412 AAAATATATAATA
1 AAAATATATAATA
63973425 TAATATAAGA
Statistics
Matches: 38, Mismatches: 3, Indels: 6
0.81 0.06 0.13
Matches are distributed among these distances:
14 13 0.34
15 7 0.18
16 8 0.21
17 10 0.26
ACGTcount: A:0.61, C:0.02, G:0.03, T:0.34
Consensus pattern (15 bp):
AAAATATATAATAAT
Found at i:63973412 original size:34 final size:33
Alignment explanation
Indices: 63973362--63973429 Score: 100
Period size: 34 Copynumber: 2.0 Consensus size: 33
63973352 ATAATTTACA
* *
63973362 AATAAAAATATGTAATAATATAAATCATATAAT
1 AATAAAAATATGTAATAAAATAAATAATATAAT
*
63973395 AATAAAATATATGTAATAAAATATATAATATAAT
1 AATAAAA-ATATGTAATAAAATAAATAATATAAT
63973429 A
1 A
63973430 TAAGAAGAAT
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
33 7 0.23
34 24 0.77
ACGTcount: A:0.62, C:0.01, G:0.03, T:0.34
Consensus pattern (33 bp):
AATAAAAATATGTAATAAAATAAATAATATAAT
Found at i:63973423 original size:12 final size:12
Alignment explanation
Indices: 63973388--63973431 Score: 52
Period size: 12 Copynumber: 3.4 Consensus size: 12
63973378 AATATAAATC
63973388 ATATAATAATAAA
1 ATAT-ATAATAAA
63973401 ATATATGTAATAAA
1 ATATA--TAATAAA
*
63973415 ATATATAATATA
1 ATATATAATAAA
63973427 ATATA
1 ATATA
63973432 AGAAGAATAT
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
12 12 0.43
13 4 0.14
14 12 0.43
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.36
Consensus pattern (12 bp):
ATATATAATAAA
Found at i:63973576 original size:7 final size:7
Alignment explanation
Indices: 63973532--63973697 Score: 70
Period size: 7 Copynumber: 24.6 Consensus size: 7
63973522 TTACTAACTT
63973532 TATAA-A
1 TATAATA
*
63973538 TAAAATA
1 TATAATA
63973545 TATAATAA
1 TATAAT-A
63973553 TATGAATAA
1 TAT-AAT-A
63973562 TATAATA
1 TATAATA
63973569 TAT--TA
1 TATAATA
63973574 TATAA-A
1 TATAATA
*
63973580 AATAATA
1 TATAATA
* *
63973587 TGTACTA
1 TATAATA
*
63973594 -A-AACA
1 TATAATA
63973599 TATAATA
1 TATAATA
63973606 TA-AATA
1 TATAATA
63973612 TA-AATA
1 TATAATA
63973618 -ATATATA
1 TATA-ATA
63973625 TATAAATA
1 TAT-AATA
*
63973633 TATGATA
1 TATAATA
*
63973640 -AAAAT-
1 TATAATA
*
63973645 TAAAAATA
1 T-ATAATA
63973653 TATAATAA
1 TATAAT-A
63973661 TATAATA
1 TATAATA
* *
63973668 GATAAAA
1 TATAATA
*
63973675 TATAGTA
1 TATAATA
63973682 -A-AATA
1 TATAATA
*
63973687 AATAATA
1 TATAATA
63973694 TATA
1 TATA
63973698 TAATGAAAAT
Statistics
Matches: 121, Mismatches: 21, Indels: 35
0.68 0.12 0.20
Matches are distributed among these distances:
5 11 0.09
6 26 0.21
7 52 0.43
8 23 0.19
9 9 0.07
ACGTcount: A:0.61, C:0.01, G:0.03, T:0.34
Consensus pattern (7 bp):
TATAATA
Found at i:63973620 original size:15 final size:15
Alignment explanation
Indices: 63973600--63973695 Score: 69
Period size: 15 Copynumber: 6.5 Consensus size: 15
63973590 ACTAAAACAT
63973600 ATAATATAAATATAA
1 ATAATATAAATATAA
*
63973615 ATAATATATATATAA
1 ATAATATAAATATAA
*
63973630 AT-ATAT-GATA-AA
1 ATAATATAAATATAA
* *
63973642 A-ATTAAAAATATATA
1 ATAATATAAATATA-A
*
63973657 ATAATATAATAGATAA
1 ATAATATAA-ATATAA
63973673 A-ATATAGTAAA-ATAA
1 ATA-ATA-TAAATATAA
63973688 ATAATATA
1 ATAATATA
63973696 TATAATGAAA
Statistics
Matches: 64, Mismatches: 8, Indels: 19
0.70 0.09 0.21
Matches are distributed among these distances:
12 5 0.08
13 6 0.09
14 7 0.11
15 27 0.42
16 12 0.19
17 7 0.11
ACGTcount: A:0.64, C:0.00, G:0.03, T:0.33
Consensus pattern (15 bp):
ATAATATAAATATAA
Found at i:63973641 original size:32 final size:32
Alignment explanation
Indices: 63973536--63973667 Score: 91
Period size: 32 Copynumber: 4.1 Consensus size: 32
63973526 TAACTTTATA
63973536 AATA-AAATATATAATAATATGA-ATAATATAATAT
1 AATATAAATATA-AATAATAT-ATAT-ATA-AATAT
* * * *
63973570 -AT-TATATAAAAATAATATGTACTAAAACATAT
1 AATATAAATATAAATAATATATA-TATAA-ATAT
63973602 AATATAAATATAAATAATATATATATAAATAT
1 AATATAAATATAAATAATATATATATAAATAT
*
63973634 -ATGATAAAAATTAAA-AATATATA-AT-AATAT
1 AAT-ATAAATA-TAAATAATATATATATAAATAT
63973664 AATA
1 AATA
63973668 GATAAAATAT
Statistics
Matches: 80, Mismatches: 9, Indels: 22
0.72 0.08 0.20
Matches are distributed among these distances:
30 6 0.08
31 7 0.09
32 33 0.41
33 18 0.22
34 16 0.20
ACGTcount: A:0.61, C:0.02, G:0.02, T:0.35
Consensus pattern (32 bp):
AATATAAATATAAATAATATATATATAAATAT
Found at i:63973676 original size:17 final size:16
Alignment explanation
Indices: 63973548--63973715 Score: 60
Period size: 15 Copynumber: 10.6 Consensus size: 16
63973538 TAAAATATAT
*
63973548 AATAATATGAATAATAT
1 AATAATAT-AATAATAA
*
63973565 AAT-ATATTAT-ATAAA
1 AATAATATAATAAT-AA
*
63973580 AATAATATGTACTAA-AA
1 AATAATA--TAATAATAA
63973597 CATATAATAT-A-AATATA
1 -A-ATAATATAATAATA-A
63973614 AATAATAT-AT-ATATA
1 AATAATATAATAATA-A
*
63973629 AAT-ATATGATAA-AA
1 AATAATATAATAATAA
* *
63973643 ATTAA-A-AAT-ATAT
1 AATAATATAATAATAA
63973656 AATAATATAATAGATAA
1 AATAATATAATA-ATAA
63973673 AAT-ATAGTAA-AAT-A
1 AATAATA-TAATAATAA
63973687 AATAATATATATAATGAA
1 AATAATATA-ATAAT-AA
63973705 AATACATATAA
1 AATA-ATATAA
63973716 CATATAGTAA
Statistics
Matches: 116, Mismatches: 10, Indels: 49
0.66 0.06 0.28
Matches are distributed among these distances:
12 1 0.01
13 7 0.06
14 17 0.15
15 37 0.32
16 17 0.15
17 16 0.14
18 9 0.08
19 12 0.10
ACGTcount: A:0.61, C:0.02, G:0.04, T:0.33
Consensus pattern (16 bp):
AATAATATAATAATAA
Found at i:63973687 original size:22 final size:21
Alignment explanation
Indices: 63973536--63973728 Score: 76
Period size: 22 Copynumber: 9.0 Consensus size: 21
63973526 TAACTTTATA
* *
63973536 AATAA-AATATATAATAATAT
1 AATAATAAAATATAATAAAAT
* * *
63973556 GAATAATATAATAT-ATTATAT
1 -AATAATAAAATATAATAAAAT
* * * * *
63973577 AAAAATAATATGTACTAAAAC
1 AATAATAAAATATAATAAAAT
*
63973598 ATATAATATAAATATAA-ATAAT
1 A-ATAATA-AAATATAATAAAAT
*
63973620 ATATATATAAATATATGATAAAA-
1 A-ATA-ATAAA-ATATAATAAAAT
* *
63973643 ATTAA-AAATATATAATAATAT
1 AATAATAAA-ATATAATAAAAT
*
63973664 AATAGATAAAATATAGTAAAAT
1 AATA-ATAAAATATAATAAAAT
*
63973686 AAATAAT-ATATATAATGAAAAT
1 -AATAATAAAATATAAT-AAAAT
* *
63973708 ACAT-ATAACATATAGTAAAAT
1 A-ATAATAAAATATAATAAAAT
63973729 GCAAATATAA
Statistics
Matches: 129, Mismatches: 29, Indels: 28
0.69 0.16 0.15
Matches are distributed among these distances:
20 22 0.17
21 34 0.26
22 49 0.38
23 21 0.16
24 3 0.02
ACGTcount: A:0.61, C:0.02, G:0.04, T:0.33
Consensus pattern (21 bp):
AATAATAAAATATAATAAAAT
Found at i:63973721 original size:43 final size:40
Alignment explanation
Indices: 63973602--63973750 Score: 110
Period size: 41 Copynumber: 3.6 Consensus size: 40
63973592 TAAAACATAT
* * *
63973602 AATATAAATATA-AATAAT-ATATATAT-AAATATATGATAAA
1 AATAAAAATATATAATAATAAAATACATAAAATATA-G-T-AA
* *
63973642 AATTAAAAATATATAATAATATAATAGATAAAATATAGTAA
1 AA-TAAAAATATATAATAATAAAATACATAAAATATAGTAA
63973683 AATAAATAATATAT-ATAATGAAAATACATATAACATATAGTAA
1 AATAAA-AATATATAATAAT-AAAATACATA-AA-ATATAGTAA
** *
63973726 AATGCAAATATA-ACAAAATAAAATA
1 AATAAAAATATATA-ATAATAAAATA
63973751 TATATATAAA
Statistics
Matches: 90, Mismatches: 9, Indels: 18
0.77 0.08 0.15
Matches are distributed among these distances:
40 11 0.12
41 28 0.31
42 21 0.23
43 23 0.26
44 7 0.08
ACGTcount: A:0.63, C:0.03, G:0.04, T:0.30
Consensus pattern (40 bp):
AATAAAAATATATAATAATAAAATACATAAAATATAGTAA
Found at i:63973767 original size:12 final size:13
Alignment explanation
Indices: 63973532--63973767 Score: 55
Period size: 15 Copynumber: 17.4 Consensus size: 13
63973522 TTACTAACTT
*
63973532 TATAAATAAAATA
1 TATATATAAAATA
*
63973545 TATA-ATAATATGA
1 TATATATAAAAT-A
*
63973558 -ATA-ATATAATA
1 TATATATAAAATA
63973569 TATTATATAAAAATAA
1 TA-TATAT-AAAAT-A
* *
63973585 TATGTACTAAAACA
1 TATATA-TAAAATA
63973599 TATA-ATATAAATA
1 TATATATA-AAATA
63973612 TA-A-AT--AATA
1 TATATATAAAATA
63973621 TATATAT-AAATA
1 TATATATAAAATA
63973633 TATGATA-AAAATTAAA
1 TAT-ATATAAAA-T--A
*
63973649 AATATATAATAATA
1 TATATATAA-AATA
*
63973663 TAATAGATAAAATA
1 T-ATATATAAAATA
*
63973677 TAGTA-AAATAAATAA
1 TA-TATATA-AAAT-A
*
63973692 TATATATAATGAAAA
1 TATATATAA--AATA
* *
63973707 TACATATAACATA
1 TATATATAAAATA
* *
63973720 TAGTAAAATGCAAATA
1 TA-T-ATAT-AAAATA
* *
63973736 TAACAAAATAAAATA
1 T-A-TATATAAAATA
63973751 TATATATAAAA-A
1 TATATATAAAATA
63973763 TATAT
1 TATAT
63973768 GACAAAAAAA
Statistics
Matches: 168, Mismatches: 26, Indels: 59
0.66 0.10 0.23
Matches are distributed among these distances:
9 6 0.04
10 1 0.01
11 3 0.02
12 33 0.20
13 34 0.20
14 23 0.14
15 44 0.26
16 21 0.12
17 3 0.02
ACGTcount: A:0.61, C:0.03, G:0.03, T:0.33
Consensus pattern (13 bp):
TATATATAAAATA
Found at i:63975934 original size:289 final size:289
Alignment explanation
Indices: 63975391--63976180 Score: 1366
Period size: 289 Copynumber: 2.7 Consensus size: 289
63975381 TTCGATCTAC
* * * * * * * *
63975391 TCTCTGCCAATGCAGGGATGCAAAATCATCTTAGATTTGCTTCAGCGTAAGCACG-CAAAAGCCA
1 TCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAACACGTGAAAA-CCA
** * * ** **
63975455 AATCAATTATGCCTTCGAATTACTCCTTGTAAGTACAAGGATACCAAATCATCTTGGATTTGTTT
65 AATCAGCTATGGCTTCGATTTGTTCCTTGTAAACACAAGGATACCAAATCATCTTGGATTTGTTT
*
63975520 GAGAACATCTGAGAGTCAAATTTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATGCCAA
130 GAGAACATCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATGCCAA
* *
63975585 ATCATATTGGATCTGCTTTAGTATAAACATCTGAAGGTTAGATCTGCTACGTGTCTGCCCTCCGT
195 ATCATATTGGATCTGCTTTAGTATAAACATCTGAAGGTTAGATCTGCTACGTGCCTGCCCTCCAT
63975650 CGAATATGGAGACGCCAAACTTTGATTTGT
260 CGAATATGGAGACGCCAAACTTTGATTTGT
*
63975680 TCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAACACGTGAAACCCAA
1 TCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAACACGTGAAAACCAA
63975745 ATCAGCTATGGCTTCGATTTGTTCCTTGTAAACACAAGGATACCAAATCATCTTGGATTTGTTTG
66 ATCAGCTATGGCTTCGATTTGTTCCTTGTAAACACAAGGATACCAAATCATCTTGGATTTGTTTG
63975810 AGAACATCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATGCCAAA
131 AGAACATCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATGCCAAA
63975875 TCATATTGGATCTGCTTTAGTATAAACATCTGAAGGTTAGATCTGCTACGTGCCTGCCCTCCATC
196 TCATATTGGATCTGCTTTAGTATAAACATCTGAAGGTTAGATCTGCTACGTGCCTGCCCTCCATC
63975940 GAATATGGAGACGCCAAACTTTGATTTGT
261 GAATATGGAGACGCCAAACTTTGATTTGT
63975969 TCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAACACGTGAAAACCAA
1 TCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAACACGTGAAAACCAA
63976034 ATCAGCTATGGCTTCGATTTGTTCCTTGTAAACACAAGGATACCAAATCATCTTGGATTTGTTTG
66 ATCAGCTATGGCTTCGATTTGTTCCTTGTAAACACAAGGATACCAAATCATCTTGGATTTGTTTG
63976099 AGAACATCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATGCCAAA
131 AGAACATCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATGCCAAA
* *
63976164 TCATCTTCGATCTGCTT
196 TCATATTGGATCTGCTT
63976181 CAGCCAGATC
Statistics
Matches: 477, Mismatches: 23, Indels: 2
0.95 0.05 0.00
Matches are distributed among these distances:
289 474 0.99
290 3 0.01
ACGTcount: A:0.30, C:0.22, G:0.18, T:0.31
Consensus pattern (289 bp):
TCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAACACGTGAAAACCAA
ATCAGCTATGGCTTCGATTTGTTCCTTGTAAACACAAGGATACCAAATCATCTTGGATTTGTTTG
AGAACATCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATGCCAAA
TCATATTGGATCTGCTTTAGTATAAACATCTGAAGGTTAGATCTGCTACGTGCCTGCCCTCCATC
GAATATGGAGACGCCAAACTTTGATTTGT
Found at i:63981679 original size:40 final size:39
Alignment explanation
Indices: 63981622--63981733 Score: 145
Period size: 40 Copynumber: 2.8 Consensus size: 39
63981612 GGATATAGCT
* *
63981622 ACTCGCTCAAATACCTTCGGGACATAGCCCGG-TTAGAGTA
1 ACTCGCACAAATGCCTTCGGGAC-TAGCCCGGATT-GAGTA
* *
63981662 ACTCGCACAATTGCCTTCGGGACTTAGCCCGGATTTAGTA
1 ACTCGCACAAATGCCTTCGGGAC-TAGCCCGGATTGAGTA
*
63981702 ACTCGCACAAATGCCTTCGGGACTTGCCCGGA
1 ACTCGCACAAATGCCTTCGGGACTAGCCCGGA
63981734 ACTAGTCACT
Statistics
Matches: 64, Mismatches: 7, Indels: 3
0.86 0.09 0.04
Matches are distributed among these distances:
39 8 0.12
40 54 0.84
41 2 0.03
ACGTcount: A:0.24, C:0.29, G:0.23, T:0.23
Consensus pattern (39 bp):
ACTCGCACAAATGCCTTCGGGACTAGCCCGGATTGAGTA
Found at i:63981755 original size:39 final size:40
Alignment explanation
Indices: 63981629--63981772 Score: 139
Period size: 40 Copynumber: 3.6 Consensus size: 40
63981619 GCTACTCGCT
* * * * **
63981629 CAAATACCTTCGGGACATAGCCCGGTTA-GAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-AACTAGTAACTAACA
* ** **
63981669 CAATTGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAACTAGTAACTAACA
* *
63981709 CAAATGCCTTCGGGACTT-GCCCGGAACTAGTCACTAACG
1 CAAATGCCTTCGGGACTTAGCCCGGAACTAGTAACTAACA
*
63981748 CAGATGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
63981773 TTATCATCCA
Statistics
Matches: 88, Mismatches: 14, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 32 0.36
40 56 0.64
ACGTcount: A:0.24, C:0.29, G:0.24, T:0.22
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAACTAGTAACTAACA
Found at i:63985615 original size:47 final size:47
Alignment explanation
Indices: 63985549--63986024 Score: 790
Period size: 47 Copynumber: 10.1 Consensus size: 47
63985539 GAAATGATAG
*
63985549 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAGGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
63985596 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
63985643 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTAA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
63985690 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
63985737 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA--TGTGA
*
63985786 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* *
63985833 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTAA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
63985880 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
63985927 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*** * * * * * * *
63985974 CGGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGCATAAATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
63986021 TAAG
1 TAAG
63986025 TCCCGAAGGG
Statistics
Matches: 405, Mismatches: 22, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
47 359 0.89
49 46 0.11
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:63985870 original size:190 final size:190
Alignment explanation
Indices: 63985549--63985972 Score: 825
Period size: 190 Copynumber: 2.2 Consensus size: 190
63985539 GAAATGATAG
63985549 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA-G-GTGATAAGGCCTAATAGCCG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGTGATAAGGCCTAATAGCCG
*
63985612 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
66 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAG
63985677 TGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
131 TGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
63985737 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGTGATAAGGCCTAATAGCCG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGTGATAAGGCCTAATAGCCG
63985802 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAG
66 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAG
63985867 TGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
131 TGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
63985927 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTG
63985973 ACGGGGCCGA
Statistics
Matches: 233, Mismatches: 1, Indels: 2
0.99 0.00 0.01
Matches are distributed among these distances:
188 42 0.18
189 1 0.00
190 190 0.82
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (190 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGTGATAAGGCCTAATAGCCG
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAG
TGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:63985964 original size:237 final size:237
Alignment explanation
Indices: 63985549--63986019 Score: 816
Period size: 237 Copynumber: 2.0 Consensus size: 237
63985539 GAAATGATAG
*
63985549 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAGGTGATAAGGCCTAATAGCCGAT
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATAGGTGATAAGGCCTAATAGCCGAT
*
63985614 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
66 GTGATGAATGTGAAAGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
63985679 TATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
131 TATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAAGGCC
* * * * *
63985744 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGTGA
196 GAATGGCCAACGTGATGAATGTGAAAGTGCATAAATGTGTGA
*
63985786 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGAT
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATAGGTGATAAGGCCTAATAGCCGAT
63985851 GTGATGAATGTGAAAGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
66 GTGATGAATGTGAAAGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* **
63985916 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACGGGGCC
131 TATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAAGGCC
* *
63985981 GAGTGGCCAACGTGATGGATGTGAAAGTGCATAAATGTG
196 GAATGGCCAACGTGATGAATGTGAAAGTGCATAAATGTG
63986020 ATAAGTCCCG
Statistics
Matches: 220, Mismatches: 14, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
237 220 1.00
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (237 bp):
TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATAGGTGATAAGGCCTAATAGCCGAT
GTGATGAATGTGAAAGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
TATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAAGGCC
GAATGGCCAACGTGATGAATGTGAAAGTGCATAAATGTGTGA
Found at i:63986199 original size:37 final size:37
Alignment explanation
Indices: 63986143--63986221 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
63986133 CCGAGCTCTA
* *
63986143 AAGACCCGATGACTACGTGTGG-GAATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
63986180 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
63986217 AAGAC
1 AAGAC
63986222 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 37 0.97
38 1 0.03
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:63988122 original size:43 final size:43
Alignment explanation
Indices: 63988074--63988176 Score: 206
Period size: 43 Copynumber: 2.4 Consensus size: 43
63988064 TTGGTTTTCA
63988074 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
63988117 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
63988160 GCACTAAGTGTGCGGGC
1 GCACTAAGTGTGCGGGC
63988177 TTGAAATGCA
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 60 1.00
ACGTcount: A:0.22, C:0.16, G:0.36, T:0.26
Consensus pattern (43 bp):
GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
Found at i:63988193 original size:29 final size:29
Alignment explanation
Indices: 63988158--63988231 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
63988148 GTTGTGAGAT
* *
63988158 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
63988187 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
63988216 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
63988232 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:63988667 original size:40 final size:40
Alignment explanation
Indices: 63988544--63988739 Score: 184
Period size: 40 Copynumber: 4.9 Consensus size: 40
63988534 TCGAATGATG
** *
63988544 TCCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCT-AGTGA-TATA
* ** * * *
63988584 TCCGGTCTAAGAT-CCGAAG-GCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGAGCATTCATGCTAGTGA-TATA
*
63988624 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
* *
63988664 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
* * * *
63988704 TCCGTGCTAAATCCCGAAGAGCAATCATGCTGGTGA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA
63988740 CGTGTATTCG
Statistics
Matches: 130, Mismatches: 22, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
39 1 0.01
40 110 0.85
41 19 0.15
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
Found at i:63988680 original size:80 final size:81
Alignment explanation
Indices: 63988544--63988740 Score: 222
Period size: 80 Copynumber: 2.5 Consensus size: 81
63988534 TCGAATGATG
** *
63988544 TCCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATATCCGGTCTAAGATCCGAAG-GCA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCT-AGTGACCATATCCGGGCTAAGATCCGAAGAGCA
* *
63988606 TTGGTGCGAGTTACTAAA
65 TTCGTGCGAGTGA-TAAA
** *
63988624 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA-TGTATCCGGGCTAAGTTCCGAAGAGCAT
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGACCATATCCGGGCTAAGATCCGAAGAGCAT
* *
63988688 TCGTGCTAGTGATATA
66 TCGTGCGAGTGATAAA
* * * *
63988704 TCCGTGCTAAATCCCGAAGAGCAATCATGCTGGTGAC
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGAC
63988741 GTGTATTCGG
Statistics
Matches: 99, Mismatches: 14, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
80 73 0.74
81 20 0.20
82 6 0.06
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGACCATATCCGGGCTAAGATCCGAAGAGCAT
TCGTGCGAGTGATAAA
Found at i:63992211 original size:47 final size:47
Alignment explanation
Indices: 63992142--63992233 Score: 184
Period size: 47 Copynumber: 2.0 Consensus size: 47
63992132 GAAATGATAG
63992142 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTAA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTAA
63992189 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGT
63992234 GACGGGGCCG
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 45 1.00
ACGTcount: A:0.33, C:0.09, G:0.28, T:0.30
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTAA
Found at i:63992250 original size:47 final size:47
Alignment explanation
Indices: 63992143--63992282 Score: 172
Period size: 47 Copynumber: 3.0 Consensus size: 47
63992133 AAATGATAGT
* * *
63992143 AAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTAAT
1 AAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAC
*
63992190 AAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAC
1 AAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAC
** * * * * * *
63992237 GGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGCATAAATGTGA
1 AAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
63992283 TAAGTCCCGA
Statistics
Matches: 82, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
47 82 1.00
ACGTcount: A:0.31, C:0.11, G:0.32, T:0.26
Consensus pattern (47 bp):
AAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAC
Found at i:63992461 original size:37 final size:37
Alignment explanation
Indices: 63992405--63992483 Score: 106
Period size: 37 Copynumber: 2.1 Consensus size: 37
63992395 CCGAGCTCTA
* *
63992405 AAGACCCGATGACTACGTGTGG-GAATTTTGTCCGGGG
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGG
* *
63992442 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGG
63992479 AAGAC
1 AAGAC
63992484 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
37 36 0.97
38 1 0.03
ACGTcount: A:0.25, C:0.19, G:0.32, T:0.24
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGG
Found at i:63994852 original size:16 final size:18
Alignment explanation
Indices: 63994831--63994864 Score: 54
Period size: 16 Copynumber: 2.0 Consensus size: 18
63994821 GGTACGCCAT
63994831 GTGTGAT-GAC-AAGGCC
1 GTGTGATCGACGAAGGCC
63994847 GTGTGATCGACGAAGGCC
1 GTGTGATCGACGAAGGCC
63994865 AAGCTGTACG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 7 0.44
17 3 0.19
18 6 0.38
ACGTcount: A:0.24, C:0.21, G:0.38, T:0.18
Consensus pattern (18 bp):
GTGTGATCGACGAAGGCC
Found at i:64005581 original size:30 final size:30
Alignment explanation
Indices: 64005545--64005605 Score: 122
Period size: 30 Copynumber: 2.0 Consensus size: 30
64005535 AGTCAACTCG
64005545 TACAGGGATGATGGATCTAGAAGAAGGAAT
1 TACAGGGATGATGGATCTAGAAGAAGGAAT
64005575 TACAGGGATGATGGATCTAGAAGAAGGAAT
1 TACAGGGATGATGGATCTAGAAGAAGGAAT
64005605 T
1 T
64005606 CACGAAGACA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.39, C:0.07, G:0.33, T:0.21
Consensus pattern (30 bp):
TACAGGGATGATGGATCTAGAAGAAGGAAT
Found at i:64010241 original size:21 final size:21
Alignment explanation
Indices: 64010215--64010260 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
64010205 TAAATATGTC
*
64010215 AAATATT-ATTAAAATTTATAA
1 AAATATTAAATAAAATTTA-AA
64010236 AAATATTAAATAAAATTTAAA
1 AAATATTAAATAAAATTTAAA
64010257 AAAT
1 AAAT
64010261 TAAAAAATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 13 0.57
22 10 0.43
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (21 bp):
AAATATTAAATAAAATTTAAA
Found at i:64010268 original size:22 final size:22
Alignment explanation
Indices: 64010224--64010270 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 22
64010214 CAAATATTAT
**
64010224 TAAAATTTATAAAAATATTAAA
1 TAAAATTTATAAAAATAAAAAA
64010246 TAAAATTTA-AAAAATTAAAAAA
1 TAAAATTTATAAAAA-TAAAAAA
64010268 TAA
1 TAA
64010271 TAAAAATCAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 5 0.23
22 17 0.77
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (22 bp):
TAAAATTTATAAAAATAAAAAA
Found at i:64010479 original size:77 final size:77
Alignment explanation
Indices: 64010393--64010555 Score: 303
Period size: 77 Copynumber: 2.1 Consensus size: 77
64010383 TTGTGTATCG
*
64010393 ATGTTTTAATTATATTGGCACCTTTTAGGATCTTTAAAAAATTAAAAATATTTTAGAAAATAAAT
1 ATGTTTTAATTATATTGGCACCTTTTAGGATCTTTAAAAAATTAAAAATATTTAAGAAAATAAAT
64010458 AAATACAAATAA
66 AAATACAAATAA
64010470 ATGTTTTAATTATATTGGCACCTTTTAGGATCTTTAAAAAATTAAAAATATTTAAGAAAATAAAT
1 ATGTTTTAATTATATTGGCACCTTTTAGGATCTTTAAAAAATTAAAAATATTTAAGAAAATAAAT
64010535 AAATACAAATAA
66 AAATACAAATAA
64010547 A--TTTTAATT
1 ATGTTTTAATT
64010556 TTATAAATCG
Statistics
Matches: 85, Mismatches: 1, Indels: 2
0.97 0.01 0.02
Matches are distributed among these distances:
75 8 0.09
77 77 0.91
ACGTcount: A:0.48, C:0.06, G:0.07, T:0.39
Consensus pattern (77 bp):
ATGTTTTAATTATATTGGCACCTTTTAGGATCTTTAAAAAATTAAAAATATTTAAGAAAATAAAT
AAATACAAATAA
Found at i:64013647 original size:27 final size:28
Alignment explanation
Indices: 64013617--64013685 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
64013607 AATACACATT
*
64013617 TAAATGATTGAATATG-TTTTTAGTGAA
1 TAAATAATTGAATATGATTTTTAGTGAA
*
64013644 TAAATAATTGAATA-GATTTTTGGTGAA
1 TAAATAATTGAATATGATTTTTAGTGAA
64013671 TAAATAATTGAATAT
1 TAAATAATTGAATAT
64013686 ATTCAGACAT
Statistics
Matches: 38, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
26 1 0.03
27 37 0.97
ACGTcount: A:0.42, C:0.00, G:0.16, T:0.42
Consensus pattern (28 bp):
TAAATAATTGAATATGATTTTTAGTGAA
Found at i:64017028 original size:37 final size:37
Alignment explanation
Indices: 64016987--64017064 Score: 102
Period size: 37 Copynumber: 2.1 Consensus size: 37
64016977 AAATACTTGG
* * *
64016987 AAATGATATTTACATGATATATTGAAACGTGACATGA
1 AAATGATATTTACATAATATATTAAAAAGTGACATGA
* * *
64017024 AAATGGTATTTACTTAATATATTAAAAAGTGACATGT
1 AAATGATATTTACATAATATATTAAAAAGTGACATGA
64017061 AAAT
1 AAAT
64017065 ATGTGATTAT
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.45, C:0.06, G:0.14, T:0.35
Consensus pattern (37 bp):
AAATGATATTTACATAATATATTAAAAAGTGACATGA
Found at i:64019176 original size:31 final size:29
Alignment explanation
Indices: 64019141--64019215 Score: 78
Period size: 29 Copynumber: 2.5 Consensus size: 29
64019131 AATGGCTCAA
* * *
64019141 TGACTAAAATATTACAATATGATAACGTAAG
1 TGACTAAAATATAAC-ATATCA-AACATAAG
* *
64019172 TGACTAAAACATAACATTTCAAACATAAG
1 TGACTAAAATATAACATATCAAACATAAG
*
64019201 TGACTAAAATGTAAC
1 TGACTAAAATATAAC
64019216 CTGAGATAAA
Statistics
Matches: 37, Mismatches: 7, Indels: 2
0.80 0.15 0.04
Matches are distributed among these distances:
29 20 0.54
30 4 0.11
31 13 0.35
ACGTcount: A:0.49, C:0.13, G:0.11, T:0.27
Consensus pattern (29 bp):
TGACTAAAATATAACATATCAAACATAAG
Found at i:64019870 original size:18 final size:19
Alignment explanation
Indices: 64019849--64019892 Score: 74
Period size: 17 Copynumber: 2.4 Consensus size: 19
64019839 TTCAAAAAAA
64019849 TTTAAAAATCTATAA-TTT
1 TTTAAAAATCTATAATTTT
64019867 TTT-AAAATCTATAATTTT
1 TTTAAAAATCTATAATTTT
64019885 TTTAAAAA
1 TTTAAAAA
64019893 ATTATTAAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
17 11 0.46
18 9 0.38
19 4 0.17
ACGTcount: A:0.45, C:0.05, G:0.00, T:0.50
Consensus pattern (19 bp):
TTTAAAAATCTATAATTTT
Found at i:64021478 original size:27 final size:26
Alignment explanation
Indices: 64021239--64021580 Score: 111
Period size: 26 Copynumber: 13.5 Consensus size: 26
64021229 AGGAAAAAAG
**
64021239 ATTTAAAATAAATAATATGTAAAACA
1 ATTTAAAATAAATAATACATAAAACA
* * ***
64021265 ATTTAAGATAAATAATATATAATTGA
1 ATTTAAAATAAATAATACATAAAACA
* * ** *
64021291 GTTTAAAATAAATATTATGTAAAAAGAA
1 ATTTAAAATAAATAATACAT-AAAA-CA
* * * *
64021319 ATTTAATATAAGTAATATACAAAAC-
1 ATTTAAAATAAATAATACATAAAACA
* * *** *
64021344 ATCTAAAAATAAA-AATAAATGGTA-T
1 AT-TTAAAATAAATAATACATAAAACA
** *
64021369 ATAAAAAATAGATAATACATATAAA-A
1 ATTTAAAATAAATAATACATA-AAACA
* ** **
64021395 ATTTGAAATTGATAATATTTGAAAA-A
1 ATTTAAAATAAATAATACAT-AAAACA
* *
64021421 TTTTAAAGTAAATAAT---T-AAACA
1 ATTTAAAATAAATAATACATAAAACA
*
64021443 ATTTAAAATGAATAATACATAAAACA
1 ATTTAAAATAAATAATACATAAAACA
** *
64021469 AGTTTAAAATAAATAATGTATAAAGCA
1 A-TTTAAAATAAATAATACATAAAACA
* * * * * *
64021496 ATTTAAAGTATATAGTATATGAAATA
1 ATTTAAAATAAATAATACATAAAACA
*
64021522 ATTTAAAAT-AAT-ATATC-TAAATCA
1 ATTTAAAATAAATAATA-CATAAAACA
* *
64021546 ATTTAAAAT-AGT-TTA-ATAAAACA
1 ATTTAAAATAAATAATACATAAAACA
64021569 ATTTAAAATAAA
1 ATTTAAAATAAA
64021581 AAAAAAATCA
Statistics
Matches: 230, Mismatches: 70, Indels: 34
0.69 0.21 0.10
Matches are distributed among these distances:
21 3 0.01
22 14 0.06
23 16 0.07
24 28 0.12
25 19 0.08
26 106 0.46
27 29 0.13
28 15 0.07
ACGTcount: A:0.57, C:0.04, G:0.06, T:0.33
Consensus pattern (26 bp):
ATTTAAAATAAATAATACATAAAACA
Found at i:64021552 original size:24 final size:24
Alignment explanation
Indices: 64021422--64021579 Score: 124
Period size: 26 Copynumber: 6.4 Consensus size: 24
64021412 TTTGAAAAAT
* *
64021422 TTTAAAGTAA-ATA-ATTAAACAA
1 TTTAAAATAATATATATAAAACAA
*
64021444 TTTAAAATGAATAATACATAAAACAA
1 TTTAAAAT-AAT-ATATATAAAACAA
* *
64021470 GTTTAAAATAAATAATGTATAAAGCAA
1 -TTTAAAAT-AAT-ATATATAAAACAA
* * *
64021497 TTTAAAGTATATAGTATATGAAATAA
1 TTTAAAATA-ATA-TATATAAAACAA
* *
64021523 TTTAAAATAATATATCTAAATCAA
1 TTTAAAATAATATATATAAAACAA
* *
64021547 TTTAAAATAGTTTA-ATAAAACAA
1 TTTAAAATAATATATATAAAACAA
64021570 TTTAAAATAA
1 TTTAAAATAA
64021580 AAAAAAAATC
Statistics
Matches: 108, Mismatches: 21, Indels: 13
0.76 0.15 0.09
Matches are distributed among these distances:
22 7 0.06
23 18 0.17
24 20 0.19
25 8 0.07
26 33 0.31
27 22 0.20
ACGTcount: A:0.56, C:0.04, G:0.06, T:0.34
Consensus pattern (24 bp):
TTTAAAATAATATATATAAAACAA
Found at i:64023530 original size:29 final size:29
Alignment explanation
Indices: 64023498--64023566 Score: 86
Period size: 29 Copynumber: 2.4 Consensus size: 29
64023488 TGTTTTCATA
* *
64023498 TTATTTTATGTAAATGTTGTCTTTTAAAT
1 TTATTTTATGTAAATATTCTCTTTTAAAT
* * *
64023527 TTATTATATGTATATATTCTCTTTTAAGT
1 TTATTTTATGTAAATATTCTCTTTTAAAT
64023556 TTA-TTTATGTA
1 TTATTTTATGTA
64023567 TAATTTGGCT
Statistics
Matches: 34, Mismatches: 6, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
28 7 0.21
29 27 0.79
ACGTcount: A:0.28, C:0.04, G:0.09, T:0.59
Consensus pattern (29 bp):
TTATTTTATGTAAATATTCTCTTTTAAAT
Found at i:64029777 original size:37 final size:37
Alignment explanation
Indices: 64029716--64029794 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
64029706 TTATTACGAA
* * *
64029716 GTCTTACCCGAACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGAACAAAATCCCCACACGAAGTCATCGG
* *
64029753 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGAACAAAATCCCCACACGAAGTCATCGG
64029790 GTCTT
1 GTCTT
64029795 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.27, C:0.32, G:0.18, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGAACAAAATCCCCACACGAAGTCATCGG
Found at i:64030000 original size:47 final size:47
Alignment explanation
Indices: 64029913--64030503 Score: 885
Period size: 47 Copynumber: 12.4 Consensus size: 47
64029903 CCTTTCGGGA
* * * * * * * *
64029913 CTTATCACATTTATGCACTTTCACATCCATTACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
64029960 CCTGTCACATATTTACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
64030007 CTTATCACATATATACACTTTCACATTCATCGCATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
64030054 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
64030101 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
64030148 CTTATTACATATATACACTTTCACATTCATCACCTCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
64030195 CTTATCACACATATACACTTTCACATTCATCACCTCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
64030242 CTTATCACACATATACACTTTCACATTCATCACGTCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
64030289 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
64030336 CTTATTACATATATACATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTA-T-CACATAT--ATACACTTTCACATTCATCACATCGGCCATTAGGC
64030387 CTTATCACATATATACATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATAT--ATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
64030438 CTTATTACATACATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
64030485 CTTATCACATATATACACT
1 CTTATCACATATATACACT
64030504 CTCTTGGCTG
Statistics
Matches: 507, Mismatches: 31, Indels: 12
0.92 0.06 0.02
Matches are distributed among these distances:
47 409 0.81
48 1 0.00
49 10 0.02
50 1 0.00
51 86 0.17
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:64033712 original size:127 final size:128
Alignment explanation
Indices: 64033559--64033804 Score: 406
Period size: 128 Copynumber: 1.9 Consensus size: 128
64033549 TCGTTGCGTA
* * *
64033559 TTTTGGAAATCATGATGTGATCTCAG-TTTTTGGAGGCTTAAAATACCGTGTCCTAATGTGCTGG
1 TTTTGGAAATCATGAGGTGATCTCAGTTTTTTGGAGGCTTAAAATACCGCGTCCTAATATGCTGG
64033623 ATGTGATATTTTATTCCTTTGGAACGAGTGAATCTCAAAATCCAA-TTGGAGTTGCTTCGAGTG
66 ATGTGATATTTTATTCCTTTGGAACGAGTGAATCTCAAAATCCAACTT-GAGTTGCTTCGAGTG
* *
64033686 TTTTGGAAATCATGAGGTGATCTCAGTTTTTTGGAGGCTTAAAATATCGCGTTCTAATATGCTGG
1 TTTTGGAAATCATGAGGTGATCTCAGTTTTTTGGAGGCTTAAAATACCGCGTCCTAATATGCTGG
* *
64033751 ATGTGGTATTTTATTCCTTTGGAACGAGTGAATCTTAAAATCCAACTTGAGTTG
66 ATGTGATATTTTATTCCTTTGGAACGAGTGAATCTCAAAATCCAACTTGAGTTG
64033805 TTCACACACT
Statistics
Matches: 110, Mismatches: 7, Indels: 3
0.92 0.06 0.03
Matches are distributed among these distances:
127 25 0.23
128 83 0.75
129 2 0.02
ACGTcount: A:0.26, C:0.13, G:0.23, T:0.38
Consensus pattern (128 bp):
TTTTGGAAATCATGAGGTGATCTCAGTTTTTTGGAGGCTTAAAATACCGCGTCCTAATATGCTGG
ATGTGATATTTTATTCCTTTGGAACGAGTGAATCTCAAAATCCAACTTGAGTTGCTTCGAGTG
Found at i:64045390 original size:177 final size:174
Alignment explanation
Indices: 64045086--64045958 Score: 1185
Period size: 177 Copynumber: 4.9 Consensus size: 174
64045076 GCGACATCGG
*
64045086 TGAAAATTACAGATCTTATCTCCATGTATCGGCTATGGGGCAGATCAAAAATGGCAAGTCTTATC
1 TGAAAATTACAGATCTTATCTCCATGTATCGGCTAT-GGGCAGATCAAAAATGGCGAGTCTTATC
* *
64045151 TCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTTATCTCTTTGAGGTAGCAAGAGAGC
65 TCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGTTA-C-AGAGAGC
*
64045216 AGGTTGAAGATACAAGTCTTATCTTCCTGAAGTTGCAAGAAGTAGAC
128 AGGTTGAAGATACAAGTCTTATCTTCCTGAAGTTGCAAGAAGCAGAC
* *
64045263 T-AAAAGTTACAGATCTTATCTCCATGTATCGGTTATGAGGCAGATCGAAAATGGCGAGTCTTAT
1 TGAAAA-TTACAGATCTTATCTCCATGTATCGGCTATG-GGCAGATCAAAAATGGCGAGTCTTAT
* *
64045327 CTCCATGTATCGGCTATGGAGCAGATTTTAACCATCAGCCTTATCTCTCTGAGTTAACAAGAGAG
64 CTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGTT-AC-AGAGAG
64045392 CAGGTTGAAGATACAAGTCTTATCTTCCTGAAGTTGCAAGAAGCAGAC
127 CAGGTTGAAGATACAAGTCTTATCTTCCTGAAGTTGCAAGAAGCAGAC
*
64045440 TGAAAATTACAGATCTTATCTCCATGTATCGGCTATGGAACAGATCAAAAATGGCGAGTCTTATC
1 TGAAAATTACAGATCTTATCTCCATGTATCGGCTATGG-GCAGATCAAAAATGGCGAGTCTTATC
* * *
64045505 TCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTTATCCCTCTAAAGTTGCAGTAGAGC
65 TCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCT-GAGTTACAG-AGAGC
* * * * * * * *
64045570 AGGCTCAATATGCAAGTCTTATCTTCTTGAAATTGTAGGAAGCAGAC
128 AGGTTGAAGATACAAGTCTTATCTTCCTGAAGTTGCAAGAAGCAGAC
* *
64045617 TGAAAATTACAGATCTTATCTCCATGTATCGGCTATGGACTAGATCAAAAATGGCGAGTATTATC
1 TGAAAATTACAGATCTTATCTCCATGTATCGGCTATGGGC-AGATCAAAAATGGCGAGTCTTATC
* * *
64045682 TCCATGTATCGGCTATGAAGTAGATTTTAGCCATCAGCCTTATCTCTCTGAAGTTACAGAGAGCA
65 TCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTG-AGTTACAGAGAGCA
* * * *
64045747 GGTTGAATATACAAGTCTTATCTTCCTGAAGTTGTAGGAAGTAGAC
129 GGTTGAAGATACAAGTCTTATCTTCCTGAAGTTGCAAGAAGCAGAC
* * * * *
64045793 TGAAAATTACAGATCTTATCTCTATGTATCGGCTATGGAGTAGATCGAAGATGGTGAGTCTTATC
1 TGAAAATTACAGATCTTATCTCCATGTATCGGCTATGG-GCAGATCAAAAATGGCGAGTCTTATC
* * * * ** *
64045858 TCCATGTATCGGCTATGGAGCAGATTTTAGCCACC-GACTTTGTCTCCCTAAAGTTGTAGTGGAG
65 TCCATGTATCGGCTATGGAGCAGATTTTAGCCACCAG-CCTTATCTCTCT-GAGTTACAG-AGAG
* *
64045922 CAGGTTGAAG-TCACAAATCTTATCTTCCTAAAGTTGC
127 CAGGTTGAAGAT-ACAAGTCTTATCTTCCTGAAGTTGC
64045959 TATAAGACTA
Statistics
Matches: 624, Mismatches: 58, Indels: 28
0.88 0.08 0.04
Matches are distributed among these distances:
175 1 0.00
176 161 0.26
177 453 0.73
178 9 0.01
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.30
Consensus pattern (174 bp):
TGAAAATTACAGATCTTATCTCCATGTATCGGCTATGGGCAGATCAAAAATGGCGAGTCTTATCT
CCATGTATCGGCTATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGTTACAGAGAGCAGG
TTGAAGATACAAGTCTTATCTTCCTGAAGTTGCAAGAAGCAGAC
Found at i:64047380 original size:29 final size:29
Alignment explanation
Indices: 64047347--64047415 Score: 95
Period size: 29 Copynumber: 2.4 Consensus size: 29
64047337 TTGTTTCATA
*
64047347 TTATTTTATGTAAATGTTCTCTTTTAAAT
1 TTATTTTATGTAAATATTCTCTTTTAAAT
* * *
64047376 TTATTATATGTATATATTCTCTTTTAAGT
1 TTATTTTATGTAAATATTCTCTTTTAAAT
64047405 TTA-TTTATGTA
1 TTATTTTATGTA
64047416 TAATTTGGCT
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
28 7 0.20
29 28 0.80
ACGTcount: A:0.28, C:0.06, G:0.07, T:0.59
Consensus pattern (29 bp):
TTATTTTATGTAAATATTCTCTTTTAAAT
Found at i:64048191 original size:127 final size:128
Alignment explanation
Indices: 64048046--64048296 Score: 405
Period size: 128 Copynumber: 2.0 Consensus size: 128
64048036 AATTTTCGTT
* *
64048046 GCGTGTTTTGAAAATCATGAGGTGATCTCAGT-TTTTGGAGGCTTAAAATATCGTGTCCTAACGT
1 GCGTGTTTTGAAAATCATGAGGTGATCTCAGTATTTTAGAGGCTTAAAATATCGTGTCCTAAAGT
* * *
64048110 GCTGGATGTGGTATTTTATTCCTTTGGAACAAGTGAATCTCAAAATCCAATTGGAGTTGCTTC
66 GCTGGATGTAGTATTTTATTCCTTTGGAACAAGTGAATCTCAAAATCCAACTCGAGTTGCTTC
* *
64048173 GCGTGTTTTGGAAATCATGAGGTGATCTCAGTATTTTAGAGGCTTAAAATATTGTGTCCTAAAGT
1 GCGTGTTTTGAAAATCATGAGGTGATCTCAGTATTTTAGAGGCTTAAAATATCGTGTCCTAAAGT
* * *
64048238 GCTGGATGTAGTATTTTATTCTTTTGGAACGAGTGAATCTTAAAATCCAACTCGAGTTG
66 GCTGGATGTAGTATTTTATTCCTTTGGAACAAGTGAATCTCAAAATCCAACTCGAGTTG
64048297 TTCACACACT
Statistics
Matches: 113, Mismatches: 10, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
127 31 0.27
128 82 0.73
ACGTcount: A:0.26, C:0.14, G:0.24, T:0.37
Consensus pattern (128 bp):
GCGTGTTTTGAAAATCATGAGGTGATCTCAGTATTTTAGAGGCTTAAAATATCGTGTCCTAAAGT
GCTGGATGTAGTATTTTATTCCTTTGGAACAAGTGAATCTCAAAATCCAACTCGAGTTGCTTC
Found at i:64049136 original size:34 final size:34
Alignment explanation
Indices: 64049093--64049161 Score: 138
Period size: 34 Copynumber: 2.0 Consensus size: 34
64049083 ATTGCCATCG
64049093 TCAACCATCACATCAGCCTCCGAGACTTCCTTGT
1 TCAACCATCACATCAGCCTCCGAGACTTCCTTGT
64049127 TCAACCATCACATCAGCCTCCGAGACTTCCTTGT
1 TCAACCATCACATCAGCCTCCGAGACTTCCTTGT
64049161 T
1 T
64049162 GCTCTTCCTC
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.23, C:0.38, G:0.12, T:0.28
Consensus pattern (34 bp):
TCAACCATCACATCAGCCTCCGAGACTTCCTTGT
Found at i:64049985 original size:28 final size:28
Alignment explanation
Indices: 64049945--64050028 Score: 168
Period size: 28 Copynumber: 3.0 Consensus size: 28
64049935 ACATGGTGGT
64049945 ACTTTTAGGTGTCCTTGGCCTCTTCTTA
1 ACTTTTAGGTGTCCTTGGCCTCTTCTTA
64049973 ACTTTTAGGTGTCCTTGGCCTCTTCTTA
1 ACTTTTAGGTGTCCTTGGCCTCTTCTTA
64050001 ACTTTTAGGTGTCCTTGGCCTCTTCTTA
1 ACTTTTAGGTGTCCTTGGCCTCTTCTTA
64050029 CCATCAAGGC
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 56 1.00
ACGTcount: A:0.11, C:0.25, G:0.18, T:0.46
Consensus pattern (28 bp):
ACTTTTAGGTGTCCTTGGCCTCTTCTTA
Found at i:64051441 original size:11 final size:11
Alignment explanation
Indices: 64051425--64051465 Score: 55
Period size: 11 Copynumber: 3.5 Consensus size: 11
64051415 TAAAAGATAA
64051425 TTTTATTTAAT
1 TTTTATTTAAT
64051436 TTTTATTATAAT
1 TTTTATT-TAAT
64051448 AATTTTATTTAAT
1 --TTTTATTTAAT
64051461 TTTTA
1 TTTTA
64051466 GTTTTAAAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
11 12 0.44
12 4 0.15
13 4 0.15
14 7 0.26
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (11 bp):
TTTTATTTAAT
Found at i:64052624 original size:22 final size:23
Alignment explanation
Indices: 64052599--64052652 Score: 67
Period size: 23 Copynumber: 2.3 Consensus size: 23
64052589 ATAAAATTTA
*
64052599 ATAAATGAAAATATT-AT-TAAAT
1 ATAAAT-AAAAAATTAATATAAAT
64052621 ATAAAATAAAAAATTAATATAAAT
1 AT-AAATAAAAAATTAATATAAAT
64052645 ATAAATAA
1 ATAAATAA
64052653 TTTAAAATAA
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
22 9 0.32
23 12 0.43
24 7 0.25
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.31
Consensus pattern (23 bp):
ATAAATAAAAAATTAATATAAAT
Found at i:64052636 original size:19 final size:21
Alignment explanation
Indices: 64052614--64052663 Score: 63
Period size: 20 Copynumber: 2.6 Consensus size: 21
64052604 TGAAAATATT
64052614 ATTAAATATAAA-ATAAA-AA
1 ATTAAATATAAATATAAATAA
64052633 ATT-AATATAAATATAAATAA
1 ATTAAATATAAATATAAATAA
*
64052653 TTTAAA-ATAAA
1 ATTAAATATAAA
64052664 CTTGAATTAA
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
18 8 0.30
19 8 0.30
20 9 0.33
21 2 0.07
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (21 bp):
ATTAAATATAAATATAAATAA
Found at i:64052641 original size:18 final size:19
Alignment explanation
Indices: 64052618--64052654 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
64052608 AATATTATTA
64052618 AATATAAA-ATAAAAAATT
1 AATATAAATATAAAAAATT
*
64052636 AATATAAATATAAATAATT
1 AATATAAATATAAAAAATT
64052655 TAAAATAAAC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 8 0.47
19 9 0.53
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (19 bp):
AATATAAATATAAAAAATT
Found at i:64053509 original size:20 final size:20
Alignment explanation
Indices: 64053486--64053530 Score: 65
Period size: 20 Copynumber: 2.2 Consensus size: 20
64053476 ATTTATTTAT
64053486 TAAAATAATAAT-TCTATAAA
1 TAAAATAATAATCT-TATAAA
*
64053506 TAAAATAATAATCTTATGAA
1 TAAAATAATAATCTTATAAA
64053526 TAAAA
1 TAAAA
64053531 CTTTAAGCAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 22 0.96
21 1 0.04
ACGTcount: A:0.60, C:0.04, G:0.02, T:0.33
Consensus pattern (20 bp):
TAAAATAATAATCTTATAAA
Found at i:64053883 original size:28 final size:28
Alignment explanation
Indices: 64053851--64053913 Score: 117
Period size: 28 Copynumber: 2.2 Consensus size: 28
64053841 GAAGTTCAGA
64053851 GTAAGGATTATTAGTTCTGATGATTGAT
1 GTAAGGATTATTAGTTCTGATGATTGAT
64053879 GTAAGGATTATTAGTTCTGATGATTGAT
1 GTAAGGATTATTAGTTCTGATGATTGAT
64053907 GTGAAGG
1 GT-AAGG
64053914 CGGTGTCCAA
Statistics
Matches: 34, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
28 30 0.88
29 4 0.12
ACGTcount: A:0.29, C:0.03, G:0.29, T:0.40
Consensus pattern (28 bp):
GTAAGGATTATTAGTTCTGATGATTGAT
Found at i:64060825 original size:40 final size:40
Alignment explanation
Indices: 64060745--64060927 Score: 246
Period size: 40 Copynumber: 4.6 Consensus size: 40
64060735 AATGATGTCT
* * * *
64060745 GGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCC
*
64060785 GGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAATCC
1 GGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAATCC
*
64060825 GGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCC
*
64060865 GGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-CC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AATCC
*
64060905 GGGCTATGTCCCGAAGGCATTTG
1 GGGCTAAGTCCCGAAGGCATTTG
64060928 AACGAGTAGC
Statistics
Matches: 130, Mismatches: 9, Indels: 8
0.88 0.06 0.05
Matches are distributed among these distances:
39 1 0.01
40 119 0.92
41 10 0.08
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCC
Found at i:64062579 original size:37 final size:37
Alignment explanation
Indices: 64062521--64062739 Score: 357
Period size: 37 Copynumber: 5.9 Consensus size: 37
64062511 GCTCAGACGA
* * *
64062521 AATCTCCACACGAAGTTATCGGGTCTTACCCGGACAA
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
64062558 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
* *
64062595 ACTCTCCACACGTAGTCATCGGGTCTTACCCGGGCAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
* *
64062632 ACTCTCCACACGTAGTCATCGGGTCTTACCCGGGCAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
*
64062669 ACTCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
*
64062706 AATCTCCACACGTAGTCATCGGGTCTCACCCGGA
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGA
64062740 ATATATTTCC
Statistics
Matches: 174, Mismatches: 8, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 174 1.00
ACGTcount: A:0.23, C:0.34, G:0.20, T:0.23
Consensus pattern (37 bp):
AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
Found at i:64063023 original size:47 final size:47
Alignment explanation
Indices: 64062944--64063231 Score: 432
Period size: 47 Copynumber: 6.1 Consensus size: 47
64062934 TATATATATT
* * * *
64062944 TCACATTGACCATTCGGCTTTACCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * * *
64062991 CCACATTGGCTATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
64063038 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* *
64063085 TCACATAGGCCATTCGGCCTTATCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * *
64063132 CCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* **
64063179 TCACATTGGCCATTCGGCCTTATCACATATATACACATTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
64063226 TCACAT
1 TCACAT
64063232 AAAATCCCAA
Statistics
Matches: 216, Mismatches: 25, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 216 1.00
ACGTcount: A:0.27, C:0.29, G:0.11, T:0.32
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:64063116 original size:141 final size:141
Alignment explanation
Indices: 64062944--64063232 Score: 506
Period size: 141 Copynumber: 2.0 Consensus size: 141
64062934 TATATATATT
* * *
64062944 TCACATTGACCATTCGGCTTTACCACATATATGCATGTTCATATTCACCACATTGGCTATTCGGC
1 TCACATAGACCATTCGGCCTTACCACATATATGCATGTTCATATTCACCACATTGGCCATTCGGC
* *
64063009 CTTATCACACATATGCATGCTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATGCAT
66 CTTATCACACATATGCATGCTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
*
64063074 GTTCACATTCA
131 ATTCACATTCA
* *
64063085 TCACATAGGCCATTCGGCCTTATCACATATATGCATGTTCATATTCACCACATTGGCCATTCGGC
1 TCACATAGACCATTCGGCCTTACCACATATATGCATGTTCATATTCACCACATTGGCCATTCGGC
64063150 CTTATCACACATATGCATGCTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
66 CTTATCACACATATGCATGCTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
64063215 ATTCACATTCA
131 ATTCACATTCA
64063226 TCACATA
1 TCACATA
64063233 AAATCCCAAA
Statistics
Matches: 140, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
141 140 1.00
ACGTcount: A:0.27, C:0.29, G:0.11, T:0.32
Consensus pattern (141 bp):
TCACATAGACCATTCGGCCTTACCACATATATGCATGTTCATATTCACCACATTGGCCATTCGGC
CTTATCACACATATGCATGCTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
ATTCACATTCA
Done.