Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100714657
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 3970000 characters in sequence are not A, C, G, or T
File 204 of 318
Found at i:64423856 original size:6 final size:6
Alignment explanation
Indices: 64423816--64423855 Score: 73
Period size: 6 Copynumber: 6.8 Consensus size: 6
64423806 ATATTGTAGG
64423816 ATTTTA ATTTTA ATTTTA ATTTTA ATTTTA ATTTT- ATTTT
1 ATTTTA ATTTTA ATTTTA ATTTTA ATTTTA ATTTTA ATTTT
64423856 TCTTTTCCCA
Statistics
Matches: 34, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
5 5 0.15
6 29 0.85
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (6 bp):
ATTTTA
Found at i:64429775 original size:40 final size:40
Alignment explanation
Indices: 64429678--64429934 Score: 317
Period size: 40 Copynumber: 6.5 Consensus size: 40
64429668 GGATGATAAT
*
64429678 CGGGCTAAGTCCCGAAGGCATTT-TGCGCTAGTGACTAGT-TC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCG--AGTTACTA-TATC
* * *
64429719 CGGGCTAAGTCTCGAAGGCATTTGTGCGAGTTATTACATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
64429759 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
* * *
64429799 CGGGCTAAGTCTCGAAGGCATTGGCGCGAGTTACTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
* *
64429839 CGGGCTAAGTCCCGAAGGCATTGGCGCGAGTTACTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
* *
64429879 CGGGCTATGTCCCGAAGGCA-TTGAGCGAG-TAGCTATAT-
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATC
* * *
64429917 CTGGTTAAATCCCGAAGG
1 CGGGCTAAGTCCCGAAGG
64429935 TACTTGGCTT
Statistics
Matches: 195, Mismatches: 18, Indels: 9
0.88 0.08 0.04
Matches are distributed among these distances:
38 16 0.08
39 13 0.07
40 140 0.72
41 22 0.11
42 4 0.02
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.26
Consensus pattern (40 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
Found at i:64440240 original size:20 final size:21
Alignment explanation
Indices: 64440215--64440253 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
64440205 CTCGTCTCAG
64440215 ATTTTAGCTTTC-TTCTATCT
1 ATTTTAGCTTTCTTTCTATCT
*
64440235 ATTTTATCTTTCTTTCTAT
1 ATTTTAGCTTTCTTTCTAT
64440254 ATCAAAGATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.15, C:0.18, G:0.03, T:0.64
Consensus pattern (21 bp):
ATTTTAGCTTTCTTTCTATCT
Found at i:64440351 original size:16 final size:16
Alignment explanation
Indices: 64440330--64440362 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
64440320 CGTACTTCAA
64440330 TGGTCTCTGTAGAGGC
1 TGGTCTCTGTAGAGGC
64440346 TGGTCTCTGTAGAGGC
1 TGGTCTCTGTAGAGGC
64440362 T
1 T
64440363 AACTTCTTCA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.12, C:0.18, G:0.36, T:0.33
Consensus pattern (16 bp):
TGGTCTCTGTAGAGGC
Found at i:64442741 original size:17 final size:17
Alignment explanation
Indices: 64442659--64442776 Score: 80
Period size: 17 Copynumber: 6.9 Consensus size: 17
64442649 TATCTTTCTA
* *
64442659 TGAACTTAAGCAATTTT
1 TGAACTTAAGTAAATTT
*
64442676 TGAA-TTCAA-TCAAATCT
1 TGAACTT-AAGT-AAATTT
* *
64442693 TGAACTTAAGCATATTT
1 TGAACTTAAGTAAATTT
* **
64442710 TAAACTTAAAAAAATTT
1 TGAACTTAAGTAAATTT
64442727 TGAACTTAAGTAAATTT
1 TGAACTTAAGTAAATTT
* * *
64442744 TGGGA-TTAAGTGAACTT
1 T-GAACTTAAGTAAATTT
*
64442761 TGAACTTAAGAAAATT
1 TGAACTTAAGTAAATT
64442777 ATAAACTTTC
Statistics
Matches: 75, Mismatches: 20, Indels: 12
0.70 0.19 0.11
Matches are distributed among these distances:
16 4 0.05
17 67 0.89
18 4 0.05
ACGTcount: A:0.42, C:0.09, G:0.12, T:0.37
Consensus pattern (17 bp):
TGAACTTAAGTAAATTT
Found at i:64443335 original size:138 final size:138
Alignment explanation
Indices: 64443089--64443338 Score: 331
Period size: 138 Copynumber: 1.8 Consensus size: 138
64443079 TTACTAGCTA
* * * * **
64443089 TTTTTGAAGGTTCCTATCATAAACTAGAAATCTTTATAACATTAGCTAGGAGCGTAGGTCTTCTA
1 TTTTTGAAGGTTCCGATCATAAACTAGAAACCTTTATAACATCAGCTAGGAGCATAGGTCCACTA
* * ** * * * * *
64443154 GTTGTGTTGGAGTTGTAAGCTTAACTTTGCGAGCTTTTTGAATATCAACTGGGAGCATAGGTCCG
66 GCTGTGTTGGAGCTACAAGCTTAACTCTACAAGCTCTTAGAATATCAACTGGGAGCATAGGTCCG
64443219 TTAGTTGT
131 TTAGTTGT
*
64443227 TTTTTG-AGGTTGCGATCATAAACTAGTAAACCTTTATAACATCAGCTAGGAGCATAGGTCCACT
1 TTTTTGAAGGTTCCGATCATAAACTAG-AAACCTTTATAACATCAGCTAGGAGCATAGGTCCACT
*
64443291 GGCTGTGTTGGAGCTACAAGCTTAACTCTACAAGCTCTTAGAATATCA
65 AGCTGTGTTGGAGCTACAAGCTTAACTCTACAAGCTCTTAGAATATCA
64443339 TCTAGAAGCG
Statistics
Matches: 94, Mismatches: 17, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
137 18 0.19
138 76 0.81
ACGTcount: A:0.28, C:0.16, G:0.22, T:0.34
Consensus pattern (138 bp):
TTTTTGAAGGTTCCGATCATAAACTAGAAACCTTTATAACATCAGCTAGGAGCATAGGTCCACTA
GCTGTGTTGGAGCTACAAGCTTAACTCTACAAGCTCTTAGAATATCAACTGGGAGCATAGGTCCG
TTAGTTGT
Found at i:64443784 original size:36 final size:36
Alignment explanation
Indices: 64443737--64443808 Score: 144
Period size: 36 Copynumber: 2.0 Consensus size: 36
64443727 GCTTATTATT
64443737 GACCTTAGAGTTGTAGTAACGAGCTACTTGTTGAGC
1 GACCTTAGAGTTGTAGTAACGAGCTACTTGTTGAGC
64443773 GACCTTAGAGTTGTAGTAACGAGCTACTTGTTGAGC
1 GACCTTAGAGTTGTAGTAACGAGCTACTTGTTGAGC
64443809 ACACATCAGG
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.31
Consensus pattern (36 bp):
GACCTTAGAGTTGTAGTAACGAGCTACTTGTTGAGC
Found at i:64448836 original size:37 final size:37
Alignment explanation
Indices: 64448786--64448864 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
64448776 TTATTACGAA
* *
64448786 GTCTTACCCGGACATAA-TCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATTC-CCACACGAAGTCATCGG
*
64448823 GTCTTACCCGGACAAAATTCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
64448860 GTCTT
1 GTCTT
64448865 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 36 0.95
38 2 0.05
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
Found at i:64449061 original size:47 final size:47
Alignment explanation
Indices: 64448983--64449307 Score: 515
Period size: 47 Copynumber: 6.9 Consensus size: 47
64448973 CCCTTCGGGA
* * * * * * *
64448983 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
64449030 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
64449077 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
64449124 CTTATTACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
64449171 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
64449218 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
**
64449265 CTTATCACGCATATACACTTTCACATTCATCACATCGGCCATT
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATT
64449308 CACATTCATC
Statistics
Matches: 257, Mismatches: 21, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 257 1.00
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:64449343 original size:22 final size:22
Alignment explanation
Indices: 64449284--64449329 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
64449274 CATATACACT
64449284 TTCACATTCATCACATCGGCCA
1 TTCACATTCATCACATCGGCCA
64449306 TTCACATTCATCACATCGGCCA
1 TTCACATTCATCACATCGGCCA
64449328 TT
1 TT
64449330 AGGCCTTATC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.26, C:0.35, G:0.09, T:0.30
Consensus pattern (22 bp):
TTCACATTCATCACATCGGCCA
Found at i:64454569 original size:35 final size:35
Alignment explanation
Indices: 64454498--64454579 Score: 103
Period size: 35 Copynumber: 2.3 Consensus size: 35
64454488 AATCCAACCA
64454498 AAACACACCAGATGCTCACAAGAGCAAATCCATCTG
1 AAACACACCA-ATGCTCACAAGAGCAAATCCATCTG
* ** *
64454534 AAACACACCAATTCTCGTAAGAGCTAATCTC-TCTG
1 AAACACACCAATGCTCACAAGAGCAAATC-CATCTG
64454569 AAACACACCAA
1 AAACACACCAA
64454580 AACAGAGAGT
Statistics
Matches: 41, Mismatches: 4, Indels: 3
0.85 0.08 0.06
Matches are distributed among these distances:
35 30 0.73
36 11 0.27
ACGTcount: A:0.41, C:0.30, G:0.11, T:0.17
Consensus pattern (35 bp):
AAACACACCAATGCTCACAAGAGCAAATCCATCTG
Found at i:64457719 original size:21 final size:21
Alignment explanation
Indices: 64457685--64457727 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 21
64457675 GTATACGGTC
*
64457685 AAAATGTTTATGAAGTGAAAAA
1 AAAATGTGTATGAA-TGAAAAA
*
64457707 AAAATGTGT-TGAATGACAAA
1 AAAATGTGTATGAATGAAAAA
64457727 A
1 A
64457728 TGATGACCAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 7 0.37
21 4 0.21
22 8 0.42
ACGTcount: A:0.53, C:0.02, G:0.19, T:0.26
Consensus pattern (21 bp):
AAAATGTGTATGAATGAAAAA
Found at i:64458283 original size:27 final size:27
Alignment explanation
Indices: 64458224--64458303 Score: 108
Period size: 28 Copynumber: 2.9 Consensus size: 27
64458214 TAAATTGTAC
*
64458224 AGCACTAAGTGTGCGAGTTGGACTATGT
1 AGCACTAAGTGTGCGAATT-GACTATGT
64458252 AGCACTAAGTGTGCGAATTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
*
64458279 TGCACT-AGTGTGCGATATTGCACTA
1 AGCACTAAGTGTGCGA-ATTG-ACTA
64458304 AGTGTGCGAA
Statistics
Matches: 48, Mismatches: 2, Indels: 4
0.89 0.04 0.07
Matches are distributed among these distances:
26 9 0.19
27 17 0.35
28 22 0.46
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAATTGACTATGT
Found at i:64458309 original size:19 final size:18
Alignment explanation
Indices: 64458278--64458320 Score: 63
Period size: 18 Copynumber: 2.4 Consensus size: 18
64458268 ATTGACTATG
64458278 TTGCACT-AGTGTGCGATA
1 TTGCACTAAGTGTGCGA-A
64458296 TTGCACTAAGTGTGCGAA
1 TTGCACTAAGTGTGCGAA
64458314 TTG-ACTA
1 TTGCACTA
64458321 TGTAGCACTA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
17 4 0.17
18 11 0.46
19 9 0.38
ACGTcount: A:0.26, C:0.16, G:0.26, T:0.33
Consensus pattern (18 bp):
TTGCACTAAGTGTGCGAA
Found at i:64458317 original size:45 final size:46
Alignment explanation
Indices: 64458253--64458393 Score: 158
Period size: 55 Copynumber: 2.9 Consensus size: 46
64458243 GGACTATGTA
*
64458253 GCACTAAGTGTGCGAATTGACTATGTTGCACT-AGTGTGCGATATT
1 GCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGATATT
64458298 GCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGATTATGT
1 GCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGC------GA-TAT-T
* * *
64458352 AGCACTAAGTGTGCGAGTTGACTATATAGCACTGAGTGTGCG
1 -GCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCG
64458394 GACTTAATAT
Statistics
Matches: 82, Mismatches: 4, Indels: 16
0.80 0.04 0.16
Matches are distributed among these distances:
45 31 0.38
46 7 0.09
49 1 0.01
52 2 0.02
53 3 0.04
54 1 0.01
55 37 0.45
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.31
Consensus pattern (46 bp):
GCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGATATT
Found at i:64458354 original size:28 final size:27
Alignment explanation
Indices: 64458298--64458393 Score: 147
Period size: 27 Copynumber: 3.5 Consensus size: 27
64458288 GTGCGATATT
*
64458298 GCACTAAGTGTGCGAATTGACTATGTA
1 GCACTAAGTGTGCGAGTTGACTATGTA
*
64458325 GCACTAAGTGTGCGAGTTTGATTATGTA
1 GCACTAAGTGTGCGAG-TTGACTATGTA
*
64458353 GCACTAAGTGTGCGAGTTGACTATATA
1 GCACTAAGTGTGCGAGTTGACTATGTA
*
64458380 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
64458394 GACTTAATAT
Statistics
Matches: 63, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 37 0.59
28 26 0.41
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.30
Consensus pattern (27 bp):
GCACTAAGTGTGCGAGTTGACTATGTA
Found at i:64458404 original size:27 final size:27
Alignment explanation
Indices: 64458293--64458404 Score: 109
Period size: 27 Copynumber: 4.1 Consensus size: 27
64458283 CTAGTGTGCG
* * *
64458293 ATATTGCACTAAGTGTGCGAATTGACT
1 ATATAGCACTAAGTGTGCGACTTGAAT
* * *
64458320 ATGTAGCACTAAGTGTGCGAGTTTGATT
1 ATATAGCACTAAGTGTGCGA-CTTGAAT
* * *
64458348 ATGTAGCACTAAGTGTGCGAGTTGACT
1 ATATAGCACTAAGTGTGCGACTTGAAT
*
64458375 ATATAGCACTGAGTGTGCGGACTT-AAT
1 ATATAGCACTAAGTGTGC-GACTTGAAT
64458402 ATA
1 ATA
64458405 CATCCTTGAA
Statistics
Matches: 73, Mismatches: 10, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
27 44 0.60
28 29 0.40
ACGTcount: A:0.29, C:0.13, G:0.26, T:0.32
Consensus pattern (27 bp):
ATATAGCACTAAGTGTGCGACTTGAAT
Found at i:64465605 original size:59 final size:59
Alignment explanation
Indices: 64465513--64465631 Score: 238
Period size: 59 Copynumber: 2.0 Consensus size: 59
64465503 ATGTTCATGC
64465513 TATGAGGTAATTTGAATAATTGACCGAAACATGGAAGGAAGGGCAAGATTTATAAATTA
1 TATGAGGTAATTTGAATAATTGACCGAAACATGGAAGGAAGGGCAAGATTTATAAATTA
64465572 TATGAGGTAATTTGAATAATTGACCGAAACATGGAAGGAAGGGCAAGATTTATAAATTA
1 TATGAGGTAATTTGAATAATTGACCGAAACATGGAAGGAAGGGCAAGATTTATAAATTA
64465631 T
1 T
64465632 GTTTTAGGGT
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
59 60 1.00
ACGTcount: A:0.42, C:0.07, G:0.24, T:0.28
Consensus pattern (59 bp):
TATGAGGTAATTTGAATAATTGACCGAAACATGGAAGGAAGGGCAAGATTTATAAATTA
Found at i:64465916 original size:21 final size:21
Alignment explanation
Indices: 64465882--64465924 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 21
64465872 GTATACGGTC
*
64465882 AAAATGTTTATGAAGTGAAAAA
1 AAAATGTGTATGAA-TGAAAAA
*
64465904 AAAATGTGT-TGAATGACAAA
1 AAAATGTGTATGAATGAAAAA
64465924 A
1 A
64465925 TGATGACCAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 7 0.37
21 4 0.21
22 8 0.42
ACGTcount: A:0.53, C:0.02, G:0.19, T:0.26
Consensus pattern (21 bp):
AAAATGTGTATGAATGAAAAA
Found at i:64466480 original size:27 final size:27
Alignment explanation
Indices: 64466421--64466599 Score: 268
Period size: 27 Copynumber: 6.6 Consensus size: 27
64466411 TAAATTGTAC
*
64466421 AGCACTAAGTGTGCGAGTTGGACTATGT
1 AGCACTAAGTGTGCGAATT-GACTATGT
64466449 AGCACTAAGTGTGCGAATTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
*
64466476 TGCACTAAGTGTGCGAATTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
*
64466503 TGCACTAAGTGTGCGAATTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* *
64466530 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGA-ATTGACTATGT
* *
64466558 AGCACTAAGTGTGCGAGTTGACTATAT
1 AGCACTAAGTGTGCGAATTGACTATGT
*
64466585 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
64466600 GACTTAATAT
Statistics
Matches: 141, Mismatches: 9, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
27 98 0.70
28 43 0.30
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.31
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAATTGACTATGT
Found at i:64466563 original size:82 final size:82
Alignment explanation
Indices: 64466421--64466599 Score: 270
Period size: 82 Copynumber: 2.2 Consensus size: 82
64466411 TAAATTGTAC
* *
64466421 AGCACTAAGTGTGCGAGTTGGACTATGTAGCACTAAGTGTGCGAATTGACTATGTTGCACTAAGT
1 AGCACTAAGTGTGCGAATTGGACTATGTAGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGT
*
64466486 GTGCGAATTGACTATGT
66 GTGCGAATTGACTATAT
* * *
64466503 TGCACTAAGTGTGCGAATT-GACTATGTAGCACTAAGTGTGCGAGTTTGATTATGTAGCACTAAG
1 AGCACTAAGTGTGCGAATTGGACTATGTAGCACTAAGTGTGCGA-ATTGACTATGTAGCACTAAG
*
64466567 TGTGCGAGTTGACTATAT
65 TGTGCGAATTGACTATAT
*
64466585 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
64466600 GACTTAATAT
Statistics
Matches: 87, Mismatches: 9, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
81 24 0.28
82 63 0.72
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.31
Consensus pattern (82 bp):
AGCACTAAGTGTGCGAATTGGACTATGTAGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGT
GTGCGAATTGACTATAT
Found at i:64474883 original size:17 final size:18
Alignment explanation
Indices: 64474854--64474891 Score: 60
Period size: 17 Copynumber: 2.2 Consensus size: 18
64474844 GCCCAGCCAC
*
64474854 AAAGAGAAAAAAAAATAA
1 AAAGAGAAAAAAAAAGAA
64474872 AAAGAG-AAAAAAAAGAA
1 AAAGAGAAAAAAAAAGAA
64474889 AAA
1 AAA
64474892 ATTAAACCCC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 13 0.68
18 6 0.32
ACGTcount: A:0.84, C:0.00, G:0.13, T:0.03
Consensus pattern (18 bp):
AAAGAGAAAAAAAAAGAA
Found at i:64478199 original size:5 final size:5
Alignment explanation
Indices: 64478189--64478232 Score: 56
Period size: 5 Copynumber: 8.8 Consensus size: 5
64478179 GAAAAAAATC
64478189 TTATT TTATT TT-TAT TTA-T TTATT TTATT TTATT TTGATT TTAT
1 TTATT TTATT TTAT-T TTATT TTATT TTATT TTATT TT-ATT TTAT
64478233 GTTAAATTAG
Statistics
Matches: 35, Mismatches: 0, Indels: 8
0.81 0.00 0.19
Matches are distributed among these distances:
4 5 0.14
5 25 0.71
6 5 0.14
ACGTcount: A:0.20, C:0.00, G:0.02, T:0.77
Consensus pattern (5 bp):
TTATT
Found at i:64478212 original size:14 final size:14
Alignment explanation
Indices: 64478189--64478232 Score: 54
Period size: 14 Copynumber: 3.0 Consensus size: 14
64478179 GAAAAAAATC
64478189 TTATTTTATTTTTAT
1 TTATTTTA-TTTTAT
64478204 TTA-TTTATTTTATT
1 TTATTTTATTTTA-T
64478218 TTATTTTGATTTTAT
1 TTATTTT-ATTTTAT
64478233 GTTAAATTAG
Statistics
Matches: 26, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
13 5 0.19
14 8 0.31
15 7 0.27
16 6 0.23
ACGTcount: A:0.20, C:0.00, G:0.02, T:0.77
Consensus pattern (14 bp):
TTATTTTATTTTAT
Found at i:64479898 original size:54 final size:54
Alignment explanation
Indices: 64479816--64479936 Score: 206
Period size: 54 Copynumber: 2.2 Consensus size: 54
64479806 CAAGCCAAGT
* * *
64479816 AGTTACACGGCCTAGCACATGGCTTGACACACTAGTATGTGAGGCCATTTTGAA
1 AGTTACACGGCCTAGCACATAGCTTGACACACTAGTATGTAAGGCCATTTCGAA
*
64479870 AGTTACACGGCCTAGCACATAGCTTGACACACTGGTATGTAAGGCCATTTCGAA
1 AGTTACACGGCCTAGCACATAGCTTGACACACTAGTATGTAAGGCCATTTCGAA
64479924 AGTTACACGGCCT
1 AGTTACACGGCCT
64479937 GGTACATGGG
Statistics
Matches: 63, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
54 63 1.00
ACGTcount: A:0.28, C:0.24, G:0.23, T:0.25
Consensus pattern (54 bp):
AGTTACACGGCCTAGCACATAGCTTGACACACTAGTATGTAAGGCCATTTCGAA
Found at i:64485846 original size:31 final size:31
Alignment explanation
Indices: 64485811--64485881 Score: 88
Period size: 31 Copynumber: 2.3 Consensus size: 31
64485801 TATTAGTTGG
64485811 TATATTAGTATGAATATCATGTACATTATGA
1 TATATTAGTATGAATATCATGTACATTATGA
* * * **
64485842 TATATTAGTGTGTATATTATGTATGTTATGA
1 TATATTAGTATGAATATCATGTACATTATGA
*
64485873 TATTTTAGT
1 TATATTAGT
64485882 GTATATATTA
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
31 34 1.00
ACGTcount: A:0.32, C:0.03, G:0.15, T:0.49
Consensus pattern (31 bp):
TATATTAGTATGAATATCATGTACATTATGA
Found at i:64485882 original size:31 final size:31
Alignment explanation
Indices: 64485836--64485902 Score: 116
Period size: 31 Copynumber: 2.2 Consensus size: 31
64485826 ATCATGTACA
*
64485836 TTATGATATATTAGTGTGTATATTATGTATG
1 TTATGATATATTAGTGTATATATTATGTATG
*
64485867 TTATGATATTTTAGTGTATATATTATGTATG
1 TTATGATATATTAGTGTATATATTATGTATG
64485898 TTATG
1 TTATG
64485903 TGTCAGACCC
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 34 1.00
ACGTcount: A:0.28, C:0.00, G:0.18, T:0.54
Consensus pattern (31 bp):
TTATGATATATTAGTGTATATATTATGTATG
Found at i:64492994 original size:19 final size:19
Alignment explanation
Indices: 64492972--64493024 Score: 61
Period size: 19 Copynumber: 2.7 Consensus size: 19
64492962 AAAAATTAGA
*
64492972 AAAAAAATATAAAAATCGT
1 AAAAAATTATAAAAATCGT
** *
64492991 AAAATTTTATAAAAATTGT
1 AAAAAATTATAAAAATCGT
64493010 AAAACAATTATAAAA
1 AAAA-AATTATAAAA
64493025 TATATAGAAA
Statistics
Matches: 27, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
19 19 0.70
20 8 0.30
ACGTcount: A:0.64, C:0.04, G:0.04, T:0.28
Consensus pattern (19 bp):
AAAAAATTATAAAAATCGT
Found at i:64493028 original size:27 final size:27
Alignment explanation
Indices: 64493009--64493098 Score: 83
Period size: 28 Copynumber: 3.1 Consensus size: 27
64492999 ATAAAAATTG
64493009 TAAAACAATTATAAAATATATAGAAATA
1 TAAAA-AATTATAAAATATATAGAAATA
* *
64493037 TAAAAAATTATAAAACTTTATA-AAGTCA
1 TAAAAAATTATAAAA-TATATAGAAAT-A
* *
64493065 TAAGAAAATTATACAAAATGTAAAGAAATA
1 TAA-AAAATTAT--AAAATATATAGAAATA
64493095 TAAA
1 TAAA
64493099 TCTCATAAAA
Statistics
Matches: 51, Mismatches: 5, Indels: 11
0.76 0.07 0.16
Matches are distributed among these distances:
27 13 0.25
28 14 0.27
29 9 0.18
30 8 0.16
31 7 0.14
ACGTcount: A:0.62, C:0.04, G:0.06, T:0.28
Consensus pattern (27 bp):
TAAAAAATTATAAAATATATAGAAATA
Found at i:64493058 original size:20 final size:20
Alignment explanation
Indices: 64492990--64493060 Score: 53
Period size: 20 Copynumber: 3.7 Consensus size: 20
64492980 ATAAAAATCG
* *
64492990 TAAAATTTTAT-AAAAATTG
1 TAAAACTTTATAAAAAATTA
* *
64493009 TAAAACAATTATAAAATA-TA
1 TAAAAC-TTTATAAAAAATTA
64493029 TAGAAA---TATAAAAAATTA
1 TA-AAACTTTATAAAAAATTA
64493047 TAAAACTTTATAAA
1 TAAAACTTTATAAA
64493061 GTCATAAGAA
Statistics
Matches: 40, Mismatches: 5, Indels: 13
0.69 0.09 0.22
Matches are distributed among these distances:
17 11 0.28
18 4 0.10
19 5 0.12
20 13 0.32
21 7 0.17
ACGTcount: A:0.61, C:0.03, G:0.03, T:0.34
Consensus pattern (20 bp):
TAAAACTTTATAAAAAATTA
Found at i:64493323 original size:36 final size:36
Alignment explanation
Indices: 64493252--64493326 Score: 100
Period size: 36 Copynumber: 2.1 Consensus size: 36
64493242 CTAGAGATCA
**
64493252 TTATTTTTTTATAATTTTTATAAAATTTTACAATTT
1 TTATTTTTTTATAATTTTTATAAAAAATTACAATTT
64493288 TTATTTTTTTA-AGATTTTTATAAAAAATT-CTAATTT
1 TTATTTTTTTATA-ATTTTTATAAAAAATTAC-AATTT
64493324 TTA
1 TTA
64493327 ATAAATTTTA
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
35 2 0.06
36 33 0.94
ACGTcount: A:0.35, C:0.03, G:0.01, T:0.61
Consensus pattern (36 bp):
TTATTTTTTTATAATTTTTATAAAAAATTACAATTT
Found at i:64493343 original size:46 final size:45
Alignment explanation
Indices: 64493277--64493382 Score: 106
Period size: 45 Copynumber: 2.3 Consensus size: 45
64493267 TTTTATAAAA
* * * *
64493277 TTTTACAATTTTTATTTTTTTAAGATTTTTATAAAAAATT-CTAAT
1 TTTTATAAATTTTATATTTTTAAGA-TTTTATAAAAAATTAATAAT
* * * *
64493322 TTTTAATAAATTTTATATTTTTTATATTTTATTAAAATTTAATAAT
1 TTTT-ATAAATTTTATATTTTTAAGATTTTATAAAAAATTAATAAT
*
64493368 TTTTCTAAATTTTAT
1 TTTTATAAATTTTAT
64493383 TGTTTTTTAT
Statistics
Matches: 50, Mismatches: 9, Indels: 4
0.79 0.14 0.06
Matches are distributed among these distances:
45 26 0.52
46 24 0.48
ACGTcount: A:0.36, C:0.03, G:0.01, T:0.60
Consensus pattern (45 bp):
TTTTATAAATTTTATATTTTTAAGATTTTATAAAAAATTAATAAT
Found at i:64493967 original size:9 final size:10
Alignment explanation
Indices: 64493921--64493982 Score: 61
Period size: 11 Copynumber: 5.8 Consensus size: 10
64493911 CACAAAAGTC
64493921 CTCTCATAATT
1 CTCTCA-AATT
*
64493932 CTTTCTAAATT
1 CTCTC-AAATT
64493943 CTCTCCAAATT
1 CTCT-CAAATT
64493954 CTCTCAAATTT
1 CTCTCAAA-TT
*
64493965 CTCTCATATT
1 CTCTCAAATT
*
64493975 TTCTCAAA
1 CTCTCAAA
64493983 GCTCTCTTTA
Statistics
Matches: 43, Mismatches: 5, Indels: 7
0.78 0.09 0.13
Matches are distributed among these distances:
10 12 0.28
11 29 0.67
12 2 0.05
ACGTcount: A:0.27, C:0.27, G:0.00, T:0.45
Consensus pattern (10 bp):
CTCTCAAATT
Found at i:64493979 original size:21 final size:21
Alignment explanation
Indices: 64493933--64493982 Score: 59
Period size: 21 Copynumber: 2.4 Consensus size: 21
64493923 CTCATAATTC
64493933 TTTCT-AAATTCTCTCCAAAT
1 TTTCTCAAATTCTCTCCAAAT
* *
64493953 TCTCTCAAATT-TCTCTCATAT
1 TTTCTCAAATTCTCTC-CAAAT
64493974 TTTCTCAAA
1 TTTCTCAAA
64493983 GCTCTCTTTA
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
20 8 0.32
21 17 0.68
ACGTcount: A:0.28, C:0.26, G:0.00, T:0.46
Consensus pattern (21 bp):
TTTCTCAAATTCTCTCCAAAT
Found at i:64495147 original size:7 final size:7
Alignment explanation
Indices: 64495135--64495160 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
64495125 TAAAATAGTC
64495135 GTATTTA
1 GTATTTA
64495142 GTATTTA
1 GTATTTA
64495149 GTATTTA
1 GTATTTA
64495156 GTATT
1 GTATT
64495161 ATGTATATAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.27, C:0.00, G:0.15, T:0.58
Consensus pattern (7 bp):
GTATTTA
Found at i:64495800 original size:18 final size:18
Alignment explanation
Indices: 64495777--64495814 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
64495767 TGCTAGGTGC
* *
64495777 GTATCCTAGCTCTTATAT
1 GTATCCTAACCCTTATAT
64495795 GTATCCTAACCCTTATAT
1 GTATCCTAACCCTTATAT
64495813 GT
1 GT
64495815 TTCATTTTTC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.24, C:0.24, G:0.11, T:0.42
Consensus pattern (18 bp):
GTATCCTAACCCTTATAT
Found at i:64499928 original size:93 final size:93
Alignment explanation
Indices: 64499813--64499983 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
64499803 GCCCATAAGT
* *
64499813 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
64499878 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
*
64499906 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
64499971 CGAGTTCGGATGC
66 CGAGTTCGGATGC
64499984 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:64499980 original size:46 final size:46
Alignment explanation
Indices: 64499805--64499980 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
64499795 TGTAACCCGC
* * *
64499805 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
64499851 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* * *
64499901 --TTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
64499944 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
64499981 TGCTCAACCA
Statistics
Matches: 110, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 2 0.02
46 64 0.58
47 29 0.26
48 2 0.02
49 1 0.01
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:64506932 original size:40 final size:40
Alignment explanation
Indices: 64506846--64506925 Score: 108
Period size: 40 Copynumber: 2.0 Consensus size: 40
64506836 CTAAGATCGA
**
64506846 TACTATAACCGGACTAAGATCCGAAGGCATTTGTGCGAGT
1 TACTATAACCGGACTAAGATCCGAAGGCATTTGAACGAGT
* *
64506886 TACTATAACCGGGCTATG-TCCCGAAGGCATTTGAACGAGT
1 TACTATAACCGGACTAAGAT-CCGAAGGCATTTGAACGAGT
64506926 AGCTATATCC
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
39 1 0.03
40 34 0.97
ACGTcount: A:0.29, C:0.21, G:0.25, T:0.25
Consensus pattern (40 bp):
TACTATAACCGGACTAAGATCCGAAGGCATTTGAACGAGT
Found at i:64508530 original size:46 final size:46
Alignment explanation
Indices: 64508369--64508530 Score: 188
Period size: 46 Copynumber: 3.5 Consensus size: 46
64508359 TTGAAAGTAG
* * *
64508369 GGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTC
1 GGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTC
* * * *
64508415 GGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT--TTCA-CGAACTC
1 GGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCATAAGTGAACTC
64508462 GGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTC
1 GGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTC
64508508 GGACTCAACTCAACGAGTTCGGA
1 GGACTCAACTCAACGAGTTCGGA
64508531 TGCTCAACCA
Statistics
Matches: 96, Mismatches: 11, Indels: 18
0.77 0.09 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 2 0.02
46 50 0.52
47 29 0.30
48 2 0.02
49 1 0.01
50 3 0.03
51 2 0.02
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (46 bp):
GGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTC
Found at i:64511057 original size:125 final size:125
Alignment explanation
Indices: 64510678--64511234 Score: 695
Period size: 125 Copynumber: 4.5 Consensus size: 125
64510668 CCAAATAGGA
* * * *
64510678 ACTACTGTATCAAAAAAACATCCACGTGGGAGCTTTTTTCAGTAATTCTGCTGACAGTGCATCCT
1 ACTACTGTAGCAAAAAAGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGACAGTGCATCCT
*
64510743 GCTTGAAGCGTTTTGGACACTATTTGTTCAGAAACGTTTTCTC-AAATTA--TTTTCAGAT
66 GCTTGAAGCGTTTTGGACACTA-TTGTTCAGAAACGTCTTCTCAAAATTATTTTTTCAGAT
* * * *
64510801 ATTACTGTA-C-ATAAAGCATCCACGT-GGAGCTTTTTTCAGTAATTTTGGCTGAGAGTGCATCC
1 ACTACTGTAGCAAAAAAGCGTCCACGTGGGAGCTTTTTTCAGTAATTTT-GCTGACAGTGCATCC
* * *
64510863 TGCTTGAAGCGTTTTGGACTCTATTGTTTAG-AACATCTTCTCAAAATTATTTTTTCAGAT
65 TGCTTGAAGCGTTTTGGACACTATTGTTCAGAAACGTCTTCTCAAAATTATTTTTTCAGAT
* * *
64510923 ACTACTGTAGCAAAAAAGCGTCCATGTGGGAGCTTTTTTCAGTAATTTTGCTGATAGTGCATCAT
1 ACTACTGTAGCAAAAAAGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGACAGTGCATCCT
*
64510988 GCTTGAAGCGTTTTGGACACTATTGTTCAGAAACGTCTTCTCAAAATTATTTTTTCAAAT
66 GCTTGAAGCGTTTTGGACACTATTGTTCAGAAACGTCTTCTCAAAATTATTTTTTCAGAT
* * * * * * * *
64511048 ACTAATGTAGCAAAAGAGTGTCCACG-GTAGAGCTTTTTTCAGTAA-TTTGTTGATAGTACGTCC
1 ACTACTGTAGCAAAAAAGCGTCCACGTG-GGAGCTTTTTTCAGTAATTTTGCTGACAGTGCATCC
* * * * *
64511111 TGCTTAAAAGCGTTTAGGATACTATTGTTCAGAAACGTTTTCT-TAAATTATTTTTT-AGAT
65 TGCTT-GAAGCGTTTTGGACACTATTGTTCAGAAACGTCTTCTCAAAATTATTTTTTCAGAT
* * * *
64511171 ACTACTGTAGCAAAAAGAACGTCCACGTGGAAGCTTTTTTCAATAATTTTGCTGACAGTTCATC
1 ACTACTGTAGCAAAAA-AGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGACAGTGCATC
64511235 TTAATTTAAT
Statistics
Matches: 376, Mismatches: 45, Indels: 24
0.84 0.10 0.05
Matches are distributed among these distances:
119 9 0.02
120 33 0.09
121 49 0.13
122 18 0.05
123 26 0.07
124 108 0.29
125 133 0.35
ACGTcount: A:0.28, C:0.17, G:0.18, T:0.37
Consensus pattern (125 bp):
ACTACTGTAGCAAAAAAGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGACAGTGCATCCT
GCTTGAAGCGTTTTGGACACTATTGTTCAGAAACGTCTTCTCAAAATTATTTTTTCAGAT
Found at i:64511474 original size:21 final size:21
Alignment explanation
Indices: 64511450--64511491 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 21
64511440 AATAGTTAAT
64511450 TTAA-TTAATTAACCCTAAATC
1 TTAATTTAATTAACCC-AAATC
64511471 TTAATTTAATTAACCCAAATC
1 TTAATTTAATTAACCCAAATC
64511492 CTAAACCAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
21 9 0.45
22 11 0.55
ACGTcount: A:0.43, C:0.19, G:0.00, T:0.38
Consensus pattern (21 bp):
TTAATTTAATTAACCCAAATC
Found at i:64527137 original size:40 final size:40
Alignment explanation
Indices: 64527080--64527324 Score: 239
Period size: 40 Copynumber: 6.1 Consensus size: 40
64527070 TCGAATGATG
* * * *
64527080 TCCGGGCTAAG-TCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGACTAAGAT-CCGAAGGCATTTGTGC-GAGTTACTATA
* *
64527120 TCCGGACTAAGATCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTATA
** * *
64527160 TCCGGGTTAAG-TCCCGAGGGCATTTGTACGAGTTACTATA
1 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTATA
* * *
64527200 ACCAGACTAAGATCTGAAGGCATTTGTGCGAGTTACTATA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTATA
*
64527240 ACCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTATA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTATA
* * * **
64527280 ACCGGGCTATG-TCCCGAAGGCATTTGAACGAG-TAGCTATA
1 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTA-CTATA
64527320 TCCGG
1 TCCGG
64527325 TTAAATTCCG
Statistics
Matches: 173, Mismatches: 26, Indels: 12
0.82 0.12 0.06
Matches are distributed among these distances:
39 4 0.02
40 161 0.93
41 8 0.05
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTATA
Found at i:64527319 original size:120 final size:120
Alignment explanation
Indices: 64527095--64527312 Score: 323
Period size: 120 Copynumber: 1.8 Consensus size: 120
64527085 GCTAAGTCCC
*
64527095 GAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTGGTGCGAGTTACTAAA
1 GAAGGCTTTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATTGGTGCGAGTTACTAAA
* * *
64527160 TCCGGGTTAAGTCCCGAGGGCATTTGTACGAGTTACTATAACCAGACTAAGATCT
66 TCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTTACTATAACCAGACTAAGATCT
* * * *
64527215 GAAGGCATTTGTGC-GAGTTACTATAACCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAT
1 GAAGGC-TTTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATTGGTGCGAGTTACTA-
*
64527279 AA-CCGGGCTATGTCCCGAAGGCATTTGAACGAGT
64 AATCCGGGCTAAGTCCCGAAGGCATTTGAACGAGT
64527313 AGCTATATCC
Statistics
Matches: 87, Mismatches: 9, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
120 78 0.90
121 9 0.10
ACGTcount: A:0.28, C:0.20, G:0.27, T:0.26
Consensus pattern (120 bp):
GAAGGCTTTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATTGGTGCGAGTTACTAAA
TCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTTACTATAACCAGACTAAGATCT
Found at i:64528917 original size:46 final size:46
Alignment explanation
Indices: 64528756--64528917 Score: 188
Period size: 46 Copynumber: 3.5 Consensus size: 46
64528746 TTGAAAGTAG
* * *
64528756 GGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTC
1 GGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTC
* * * *
64528802 GGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT--TTCA-CGAACTC
1 GGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCATAAGTGAACTC
64528849 GGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTC
1 GGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTC
64528895 GGACTCAACTCAACGAGTTCGGA
1 GGACTCAACTCAACGAGTTCGGA
64528918 TGCTCAACCA
Statistics
Matches: 96, Mismatches: 11, Indels: 18
0.77 0.09 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 2 0.02
46 50 0.52
47 29 0.30
48 2 0.02
49 1 0.01
50 3 0.03
51 2 0.02
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (46 bp):
GGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTC
Found at i:64531314 original size:125 final size:126
Alignment explanation
Indices: 64531090--64531655 Score: 803
Period size: 126 Copynumber: 4.5 Consensus size: 126
64531080 CCAAATAGGA
* * * * *
64531090 ACTACTGTATCAAAAAAACATCCACGTGGGAGCTTTTTTCAGTAATTCTGCTGACAGTGCATCCT
1 ACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGACAGTGCATCCT
*
64531155 GCTTGAAGCGTTTTGGACACTATTTGTTCAGAAACGTTTTCTCAAAATTA-TTTTTCAGAT
66 GCTTGAAGCGTTTTGGACACTATTTGTTCAGAAACGTCTTCTCAAAATTATTTTTTCAGAT
* * * *
64531215 ATTACTGTAGCATAAGAGCATCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGAGAGTGCATCCT
1 ACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGACAGTGCATCCT
* * *
64531280 GCTTGAAGCGTTTTGGACTCTATTTGTTTAGAAACATCTTCTCAAAATTATTTTTTCAGAT
66 GCTTGAAGCGTTTTGGACACTATTTGTTCAGAAACGTCTTCTCAAAATTATTTTTTCAGAT
* * * *
64531341 ACTACTGTAGCAAAAAAGCGTCCATGTGGGAGCTTTTTTCAGTAATTTTGCTGATAGTGCATCAT
1 ACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGACAGTGCATCCT
*
64531406 GCTTGAAGCGTTTTGGACACTATTTGTTCAGAAACGTCTTCTCAAAATTATTTTTTCAAAT
66 GCTTGAAGCGTTTTGGACACTATTTGTTCAGAAACGTCTTCTCAAAATTATTTTTTCAGAT
* * * * * * *
64531467 ACTAATGTAGCAAAAGAGTGTCCACGTAGGAGCTTTTTTCAGTAATTTTGTTGATAGTACGTCCT
1 ACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGACAGTGCATCCT
* * * * *
64531532 GCTTAAAAGCGTTTAGGATACTATTTGTTCAGAAACGTTTTCTTAAAATTATTTTTT-AGAT
66 GCTT-GAAGCGTTTTGGACACTATTTGTTCAGAAACGTCTTCTCAAAATTATTTTTTCAGAT
* * * *
64531593 ACTACTGTAGCAAAAGAACGTCCACGTGGAAGCTTTTTTCAATAATTTTGCTGACAGTTCATC
1 ACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGACAGTGCATC
64531656 TTAATTTAAT
Statistics
Matches: 392, Mismatches: 47, Indels: 3
0.89 0.11 0.01
Matches are distributed among these distances:
125 104 0.27
126 241 0.61
127 47 0.12
ACGTcount: A:0.28, C:0.17, G:0.18, T:0.37
Consensus pattern (126 bp):
ACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGACAGTGCATCCT
GCTTGAAGCGTTTTGGACACTATTTGTTCAGAAACGTCTTCTCAAAATTATTTTTTCAGAT
Found at i:64531908 original size:22 final size:21
Alignment explanation
Indices: 64531877--64531917 Score: 73
Period size: 22 Copynumber: 1.9 Consensus size: 21
64531867 AATAGTTAAT
64531877 TTAATTAATTAACCCTAAATC
1 TTAATTAATTAACCCTAAATC
64531898 TTAATTTAATTAACCCTAAA
1 TTAA-TTAATTAACCCTAAA
64531918 ATCCTAAACA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 4 0.21
22 15 0.79
ACGTcount: A:0.44, C:0.17, G:0.00, T:0.39
Consensus pattern (21 bp):
TTAATTAATTAACCCTAAATC
Found at i:64542166 original size:46 final size:45
Alignment explanation
Indices: 64542116--64542291 Score: 196
Period size: 46 Copynumber: 3.8 Consensus size: 45
64542106 TGGTTGAGCA
64542116 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAATG
* * *
64542162 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAA-T--G
**
64542207 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGGAGCG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGAT-GGAATG
* * *
64542255 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
64542292 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.20, C:0.20, G:0.31, T:0.29
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAATG
Found at i:64542272 original size:93 final size:93
Alignment explanation
Indices: 64542113--64542284 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
64542103 GGATGGTTGA
* *
64542113 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
64542178 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
64542206 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGGAGCGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
64542271 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
64542285 CTTATGGGCG
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.20, C:0.21, G:0.31, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:64546235 original size:18 final size:18
Alignment explanation
Indices: 64546209--64546243 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
64546199 AAAATTGACG
* *
64546209 CTTCTTCTTCCCTTTCCC
1 CTTCCTCTTCCCCTTCCC
64546227 CTTCCTCTTCCCCTTCC
1 CTTCCTCTTCCCCTTCC
64546244 TCTTGGGTTA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.00, C:0.54, G:0.00, T:0.46
Consensus pattern (18 bp):
CTTCCTCTTCCCCTTCCC
Found at i:64546237 original size:12 final size:12
Alignment explanation
Indices: 64546222--64546247 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
64546212 CTTCTTCCCT
64546222 TTCCCCTTCCTC
1 TTCCCCTTCCTC
64546234 TTCCCCTTCCTC
1 TTCCCCTTCCTC
64546246 TT
1 TT
64546248 GGGTTACAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.00, C:0.54, G:0.00, T:0.46
Consensus pattern (12 bp):
TTCCCCTTCCTC
Found at i:64549100 original size:20 final size:20
Alignment explanation
Indices: 64549075--64549121 Score: 76
Period size: 20 Copynumber: 2.4 Consensus size: 20
64549065 ATCCAAAACA
*
64549075 CCAGAAAAGCAAATTATTTT
1 CCAGAAAAGCAAATCATTTT
*
64549095 CCAGAAAAGTAAATCATTTT
1 CCAGAAAAGCAAATCATTTT
64549115 CCAGAAA
1 CCAGAAA
64549122 TTATTTTCCG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.47, C:0.17, G:0.11, T:0.26
Consensus pattern (20 bp):
CCAGAAAAGCAAATCATTTT
Found at i:64549833 original size:13 final size:13
Alignment explanation
Indices: 64549815--64549841 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
64549805 CAATCCTTCC
64549815 ATATTAGAATGAG
1 ATATTAGAATGAG
64549828 ATATTAGAATGAG
1 ATATTAGAATGAG
64549841 A
1 A
64549842 CAAGAGAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.48, C:0.00, G:0.22, T:0.30
Consensus pattern (13 bp):
ATATTAGAATGAG
Found at i:64567585 original size:37 final size:37
Alignment explanation
Indices: 64567524--64567602 Score: 106
Period size: 37 Copynumber: 2.1 Consensus size: 37
64567514 TTATTACGAA
* *
64567524 GTCTTACCCAGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCAGACAAAATCTCCACACGAAGTCATCGG
* *
64567561 GTCTTACCCGGACAAAAT-TCCCACACGTAGTCATCGG
1 GTCTTACCCAGACAAAATCT-CCACACGAAGTCATCGG
64567598 GTCTT
1 GTCTT
64567603 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
36 1 0.03
37 36 0.97
ACGTcount: A:0.27, C:0.30, G:0.18, T:0.25
Consensus pattern (37 bp):
GTCTTACCCAGACAAAATCTCCACACGAAGTCATCGG
Found at i:64567799 original size:47 final size:47
Alignment explanation
Indices: 64567721--64568356 Score: 1103
Period size: 47 Copynumber: 13.4 Consensus size: 47
64567711 CCCTTCGGGA
* * * * * * *
64567721 CTTATCACATTTATGCACTTTCACGTCCATCACGTTGGCCACTCA-GC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCA-TTAGGC
* *
64567768 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
64567815 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
64567862 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
64567909 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
64567956 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
64568005 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
64568052 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
64568101 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
64568148 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
64568195 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
64568242 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
64568291 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
64568338 CTTATCACATATATACACT
1 CTTATCACATATATACACT
64568357 GTCTTGGCTG
Statistics
Matches: 568, Mismatches: 14, Indels: 14
0.95 0.02 0.02
Matches are distributed among these distances:
46 2 0.00
47 426 0.75
49 140 0.25
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:64567997 original size:96 final size:96
Alignment explanation
Indices: 64567776--64568352 Score: 1108
Period size: 96 Copynumber: 6.1 Consensus size: 96
64567766 GCCCTGTCAC
64567776 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACAT
1 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACAT
64567841 TCATCACATCGGCCATTAGGCCTTATCAC--
66 TCATCACATCGGCCATTAGGCCTTATCACAT
64567870 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACAT
1 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACAT
64567935 TCATCACATCGGCCATTAGGCCTTATCACAT
66 TCATCACATCGGCCATTAGGCCTTATCACAT
64567966 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACAT
1 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACAT
64568031 TCATCACATCGGCCATTAGGCCTTATCACAT
66 TCATCACATCGGCCATTAGGCCTTATCACAT
64568062 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACAT
1 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACAT
64568127 TCATCACATCGGCCATTAGGCCTTATCAC--
66 TCATCACATCGGCCATTAGGCCTTATCACAT
*
64568156 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATACACTTTCACAT
1 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACAT
64568221 TCATCACATCGGCCATTAGGCCTTATCACAT
66 TCATCACATCGGCCATTAGGCCTTATCACAT
64568252 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACAT
1 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACAT
*
64568317 TCATCACATCGGCTATTAGGCCTTATCACAT
66 TCATCACATCGGCCATTAGGCCTTATCACAT
64568348 ATATA
1 ATATA
64568353 CACTGTCTTG
Statistics
Matches: 476, Mismatches: 3, Indels: 6
0.98 0.01 0.01
Matches are distributed among these distances:
94 187 0.39
96 289 0.61
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.32
Consensus pattern (96 bp):
ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACAT
TCATCACATCGGCCATTAGGCCTTATCACAT
Found at i:64568034 original size:143 final size:141
Alignment explanation
Indices: 64567721--64568356 Score: 1103
Period size: 143 Copynumber: 4.5 Consensus size: 141
64567711 CCCTTCGGGA
* * * * * * * * *
64567721 CTTATCACATTTATGCACTTTCACGTCCATCACGTTGGCCACTCA-GCCCTGTCACATATATACA
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCA-TTAGGCCTTATCACATATATACA
64567785 CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACAT
65 CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACAT
64567850 CGGCCATTAGGC
130 CGGCCATTAGGC
64567862 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
64567927 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCACA
64567992 TCGGCCATTAGGC
129 TCGGCCATTAGGC
64568005 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
64568070 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
64 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
64568135 TCGGCCATTAGGC
129 TCGGCCATTAGGC
*
64568148 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
64568213 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCACA
64568278 TCGGCCATTAGGC
129 TCGGCCATTAGGC
*
64568291 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
64568356 T
66 T
64568357 GTCTTGGCTG
Statistics
Matches: 476, Mismatches: 12, Indels: 12
0.95 0.02 0.02
Matches are distributed among these distances:
140 2 0.00
141 136 0.29
143 291 0.61
145 47 0.10
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (141 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
GGCCATTAGGC
Found at i:64572521 original size:13 final size:13
Alignment explanation
Indices: 64572503--64572529 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
64572493 GCTCGACAGG
64572503 GACATGCCCGTGT
1 GACATGCCCGTGT
64572516 GACATGCCCGTGT
1 GACATGCCCGTGT
64572529 G
1 G
64572530 CGATTACTCC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.30, G:0.33, T:0.22
Consensus pattern (13 bp):
GACATGCCCGTGT
Found at i:64581683 original size:43 final size:43
Alignment explanation
Indices: 64581496--64581689 Score: 219
Period size: 43 Copynumber: 4.5 Consensus size: 43
64581486 GATTACTGAG
* * * *
64581496 ATGTGATTACATGTAAGACAATGTCTGGGGCATTGGCATTGTA
1 ATGTGATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTA
* * *
64581539 TTGGGATTACGTGTAAGACCATGTCTGAGACATTGGCATCGTA
1 ATGTGATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTA
* ** *
64581582 ATATGATTTTGTGTAAGAACATGTCTGGGACATTGGCATCGTA
1 ATGTGATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTA
** **
64581625 ATACGATTTTGTGTAAGACCATGTCTGGGACATTGGCATCG-A
1 ATGTGATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTA
* *
64581667 TATGTGATAACATGTAAGACCAT
1 -ATGTGATTACGTGTAAGACCAT
64581690 ATCTAGGATA
Statistics
Matches: 128, Mismatches: 22, Indels: 2
0.84 0.14 0.01
Matches are distributed among these distances:
42 1 0.01
43 127 0.99
ACGTcount: A:0.28, C:0.14, G:0.26, T:0.32
Consensus pattern (43 bp):
ATGTGATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTA
Found at i:64588105 original size:43 final size:43
Alignment explanation
Indices: 64588044--64588148 Score: 201
Period size: 43 Copynumber: 2.4 Consensus size: 43
64588034 TAAAGACAAA
*
64588044 ATTTAGCCTGTACTAGTAATTCTGATCTTACATTGAAATTAAG
1 ATTTAGCCTGGACTAGTAATTCTGATCTTACATTGAAATTAAG
64588087 ATTTAGCCTGGACTAGTAATTCTGATCTTACATTGAAATTAAG
1 ATTTAGCCTGGACTAGTAATTCTGATCTTACATTGAAATTAAG
64588130 ATTTAGCCTGGACTAGTAA
1 ATTTAGCCTGGACTAGTAA
64588149 CCTTGATTAT
Statistics
Matches: 61, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 61 1.00
ACGTcount: A:0.32, C:0.14, G:0.16, T:0.37
Consensus pattern (43 bp):
ATTTAGCCTGGACTAGTAATTCTGATCTTACATTGAAATTAAG
Found at i:64590358 original size:42 final size:42
Alignment explanation
Indices: 64590242--64590398 Score: 129
Period size: 43 Copynumber: 3.7 Consensus size: 42
64590232 GATGTGATAC
* * *
64590242 CGTGTAAGACCATGTCCGAGACATTGGCATCAATATGAGATTA
1 CGTGTAAGACCATGTCTGGGACATTGGCATCGATAT-AGATTA
* * ** *
64590285 CGTGTAAGGCCATGTATGGGACATTAACATCG-TATATGATTT
1 CGTGTAAGACCATGTCTGGGACATTGGCATCGATATA-GATTA
* * * *
64590327 CGTGTAAGACCCTGTCTGGGACAATGGCATCGATATTTGATAA
1 CGTGTAAGACCATGTCTGGGACATTGGCATCGATA-TAGATTA
* * * *
64590370 CATGTAAGAGCATGCCTGGGATA-TGGCAT
1 CGTGTAAGACCATGTCTGGGACATTGGCAT
64590399 TGTACGAGTT
Statistics
Matches: 89, Mismatches: 22, Indels: 7
0.75 0.19 0.06
Matches are distributed among these distances:
41 1 0.01
42 39 0.44
43 48 0.54
44 1 0.01
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.28
Consensus pattern (42 bp):
CGTGTAAGACCATGTCTGGGACATTGGCATCGATATAGATTA
Found at i:64600285 original size:51 final size:51
Alignment explanation
Indices: 64600179--64600286 Score: 126
Period size: 51 Copynumber: 2.1 Consensus size: 51
64600169 TTACATAATA
* * * * * ***
64600179 TGTCAATTTGGTCTTGATTTAATAAATTTAGCCCACAACATTTATGTATTG
1 TGTCAACTTGGTCCTAATCTAACAAATTTAGCCCACAACATTTACCCATTG
* *
64600230 TGTCAACTTGGTCCTAATCTAACAAATTTAGCCCATAACATTTACCCATTT
1 TGTCAACTTGGTCCTAATCTAACAAATTTAGCCCACAACATTTACCCATTG
64600281 TGTCAA
1 TGTCAA
64600287 AATTTACACA
Statistics
Matches: 47, Mismatches: 10, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
51 47 1.00
ACGTcount: A:0.31, C:0.19, G:0.11, T:0.39
Consensus pattern (51 bp):
TGTCAACTTGGTCCTAATCTAACAAATTTAGCCCACAACATTTACCCATTG
Found at i:64603160 original size:6 final size:6
Alignment explanation
Indices: 64603149--64603182 Score: 59
Period size: 6 Copynumber: 5.7 Consensus size: 6
64603139 CCGAGTAGGC
*
64603149 CAAGCT CAAGCT CAAGCA CAAGCT CAAGCT CAAG
1 CAAGCT CAAGCT CAAGCT CAAGCT CAAGCT CAAG
64603183 GCTAAGGTTG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.38, C:0.32, G:0.18, T:0.12
Consensus pattern (6 bp):
CAAGCT
Found at i:64606810 original size:38 final size:38
Alignment explanation
Indices: 64606768--64606844 Score: 154
Period size: 38 Copynumber: 2.0 Consensus size: 38
64606758 CTTATGCCTC
64606768 ATGGGTAGAACCATCCTAGTCAGATACTCAGATATAAA
1 ATGGGTAGAACCATCCTAGTCAGATACTCAGATATAAA
64606806 ATGGGTAGAACCATCCTAGTCAGATACTCAGATATAAA
1 ATGGGTAGAACCATCCTAGTCAGATACTCAGATATAAA
64606844 A
1 A
64606845 GCATTTTCAA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.40, C:0.18, G:0.18, T:0.23
Consensus pattern (38 bp):
ATGGGTAGAACCATCCTAGTCAGATACTCAGATATAAA
Found at i:64614782 original size:80 final size:81
Alignment explanation
Indices: 64614679--64614839 Score: 297
Period size: 80 Copynumber: 2.0 Consensus size: 81
64614669 ATCACAAGGA
*
64614679 ATTTCAAATAAAACACACACACACAAAATTCCATGAAGATTTTCGTTTAAAAGAAATAAAATATT
1 ATTTCAAATAAAACAAACACACACAAAATTCCATGAAGATTTTCGTTTAAAAGAAATAAAATATT
64614744 TCAATTTATAATGTTT
66 TCAATTTATAATGTTT
*
64614760 ATTTCAAATAAAA-AAACACACACAAAATTCCATGAAGTTTTTCGTTTAAAAGAAATAAAATATT
1 ATTTCAAATAAAACAAACACACACAAAATTCCATGAAGATTTTCGTTTAAAAGAAATAAAATATT
64614824 TCAATTTATAATGTTT
66 TCAATTTATAATGTTT
64614840 TTAATTAAAA
Statistics
Matches: 78, Mismatches: 2, Indels: 1
0.96 0.02 0.01
Matches are distributed among these distances:
80 65 0.83
81 13 0.17
ACGTcount: A:0.47, C:0.12, G:0.06, T:0.34
Consensus pattern (81 bp):
ATTTCAAATAAAACAAACACACACAAAATTCCATGAAGATTTTCGTTTAAAAGAAATAAAATATT
TCAATTTATAATGTTT
Found at i:64616569 original size:29 final size:29
Alignment explanation
Indices: 64616517--64616576 Score: 93
Period size: 29 Copynumber: 2.1 Consensus size: 29
64616507 TTTAGTTAAT
**
64616517 TTTTTAAAAATTAAAAATTTTTAAAAATA
1 TTTTTAAAAATTAAAAATCATTAAAAATA
*
64616546 TTTTTAAAAATTAAAAATCATTAAAATTA
1 TTTTTAAAAATTAAAAATCATTAAAAATA
64616575 TT
1 TT
64616577 ATAAAATTAT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (29 bp):
TTTTTAAAAATTAAAAATCATTAAAAATA
Found at i:64628329 original size:119 final size:120
Alignment explanation
Indices: 64628145--64628369 Score: 298
Period size: 119 Copynumber: 1.9 Consensus size: 120
64628135 GCTCCTCGTT
*
64628145 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACATAGCCCGGATATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCGG
* *
64628210 ATTTAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
66 ATGTAGTAACTTAGCACAAA-GCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* **
64628265 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGT-ATCTCGCACAAATGCCTTC-GGATCTTAGTC
1 CAAATGCCTTCGGGACATAGCCCGGATA-TAGTAAT-TCGCACAAATGCCTTCGGGA-CTTAACC
* * *
64628326 CGGATGTGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
63 CGGATGTAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGA
64628370 CATCATTCAA
Statistics
Matches: 92, Mismatches: 9, Indels: 9
0.84 0.08 0.08
Matches are distributed among these distances:
118 6 0.07
119 64 0.70
120 22 0.24
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (120 bp):
CAAATGCCTTCGGGACATAGCCCGGATATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCGG
ATGTAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:64628369 original size:40 final size:40
Alignment explanation
Indices: 64628145--64628369 Score: 266
Period size: 40 Copynumber: 5.7 Consensus size: 40
64628135 GCTCCTCGTT
* *
64628145 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAATTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTACTTCGCA
*
64628185 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAAC-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGT-ACTTCGCA
*
64628225 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAAC-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGT-ACTTCGCA
*
64628265 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTA-TCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTACT-TCGCA
* * * *
64628304 CAAATGCCTTC-GGATCTTAGTCCGGATGTGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGT-ACTTCGCA
64628345 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
64628370 CATCATTCAA
Statistics
Matches: 165, Mismatches: 11, Indels: 18
0.85 0.06 0.09
Matches are distributed among these distances:
38 3 0.02
39 31 0.19
40 115 0.70
41 15 0.09
42 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTACTTCGCA
Found at i:64629468 original size:13 final size:13
Alignment explanation
Indices: 64629450--64629474 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
64629440 GGATGAGCAT
64629450 TTTTTTTTCTTTG
1 TTTTTTTTCTTTG
64629463 TTTTTTTTCTTT
1 TTTTTTTTCTTT
64629475 CTAGTTTCGG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.08, G:0.04, T:0.88
Consensus pattern (13 bp):
TTTTTTTTCTTTG
Found at i:64636256 original size:119 final size:120
Alignment explanation
Indices: 64636065--64636295 Score: 294
Period size: 119 Copynumber: 1.9 Consensus size: 120
64636055 GATATAGCTC
* *
64636065 CTCGCTCAAATGCCTTCGGGACATAGCCCGGTTATAGTAATTCGCACAAATGCCTTCGGGACTTA
1 CTCGCACAAATGCCTTCGGGACATAGCCCGGATATAGTAATTCGCACAAATGCCTTCGGGACTTA
* *
64636130 ACTCGGATTTAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAA
66 ACTCGGATGTAGTAACTTAGCACAAA-GCCTTCGGGACTTAACCCGGATTTAGTAA
*
64636185 CTCGCACAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGT-ATCTCGCACAAATGCCTTC-GGATC
1 CTCGCACAAATGCCTTCGGGACATAGCCCGGATA-TAGTAAT-TCGCACAAATGCCTTCGGGA-C
* * * *
64636246 TT-AGTCCGGATGTGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
63 TTAACT-CGGATGTAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGA
64636296 CATCATTCAA
Statistics
Matches: 97, Mismatches: 9, Indels: 11
0.83 0.08 0.09
Matches are distributed among these distances:
118 8 0.08
119 62 0.64
120 27 0.28
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.26
Consensus pattern (120 bp):
CTCGCACAAATGCCTTCGGGACATAGCCCGGATATAGTAATTCGCACAAATGCCTTCGGGACTTA
ACTCGGATGTAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGATTTAGTAA
Found at i:64636295 original size:40 final size:40
Alignment explanation
Indices: 64636066--64636295 Score: 258
Period size: 40 Copynumber: 5.8 Consensus size: 40
64636056 ATATAGCTCC
* * *
64636066 TCGCTCAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT
1 TCGCACAAATGCCTTCGGGACTTAGCCCGGATT-TAGTACT
* *
64636106 TCGCACAAATGCCTTCGGGACTTAACTCGGATTTAGTAAC-
1 TCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGT-ACT
*
64636146 TCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAAC-
1 TCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGT-ACT
*
64636186 TCGCACAAATGCCTTCGGG-CTTAGCCCGGAATTAGTA-T
1 TCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTACT
* * *
64636224 CTCGCACAAATGCCTTC-GGATCTTAGTCCGGATGTGGTCACT
1 -TCGCACAAATGCCTTCGGGA-CTTAGCCCGGATTTAGT-ACT
*
64636266 TAGCACAAA-GCCTTCGGGACTTAGCCCGGA
1 TCGCACAAATGCCTTCGGGACTTAGCCCGGA
64636296 CATCATTCAA
Statistics
Matches: 167, Mismatches: 14, Indels: 18
0.84 0.07 0.09
Matches are distributed among these distances:
38 3 0.02
39 31 0.19
40 117 0.70
41 15 0.09
42 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
TCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTACT
Found at i:64637391 original size:13 final size:13
Alignment explanation
Indices: 64637373--64637397 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
64637363 AGGATGAGCA
64637373 TTTTTTTTCTTTG
1 TTTTTTTTCTTTG
64637386 TTTTTTTTCTTT
1 TTTTTTTTCTTT
64637398 CTAGTTTCGG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.08, G:0.04, T:0.88
Consensus pattern (13 bp):
TTTTTTTTCTTTG
Found at i:64640358 original size:10 final size:10
Alignment explanation
Indices: 64640343--64640367 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
64640333 TAAGGTTTGA
64640343 ATTTTGTTCG
1 ATTTTGTTCG
64640353 ATTTTGTTCG
1 ATTTTGTTCG
64640363 ATTTT
1 ATTTT
64640368 TATGTTTTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.12, C:0.08, G:0.16, T:0.64
Consensus pattern (10 bp):
ATTTTGTTCG
Found at i:64644950 original size:13 final size:13
Alignment explanation
Indices: 64644932--64644956 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
64644922 TAATGGTATA
64644932 TTGAATCCATGAT
1 TTGAATCCATGAT
64644945 TTGAATCCATGA
1 TTGAATCCATGA
64644957 AAATTTAGTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TTGAATCCATGAT
Found at i:64646859 original size:25 final size:25
Alignment explanation
Indices: 64646831--64646909 Score: 85
Period size: 25 Copynumber: 3.3 Consensus size: 25
64646821 CTAATGGCCG
64646831 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
* * * *
64646856 ATGTGAT-AAGGCCGAATG-GCA-A-
1 ATGTGATGAATG-TGAAAGTGTATAT
64646878 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
64646903 ATGTGAT
1 ATGTGAT
64646910 AAGGCCTAAT
Statistics
Matches: 41, Mismatches: 8, Indels: 10
0.69 0.14 0.17
Matches are distributed among these distances:
22 11 0.27
23 6 0.15
24 6 0.15
25 18 0.44
ACGTcount: A:0.35, C:0.04, G:0.29, T:0.32
Consensus pattern (25 bp):
ATGTGATGAATGTGAAAGTGTATAT
Found at i:64646859 original size:47 final size:47
Alignment explanation
Indices: 64646806--64646959 Score: 272
Period size: 47 Copynumber: 3.3 Consensus size: 47
64646796 ACAATATATG
64646806 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
* **
64646853 TATATGTGATAAGGCCGAATGGCAAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
*
64646900 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGAGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
64646947 TATATGTGATAAG
1 TATATGTGATAAG
64646960 TCCCGAAGGA
Statistics
Matches: 100, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 100 1.00
ACGTcount: A:0.34, C:0.07, G:0.29, T:0.29
Consensus pattern (47 bp):
TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
Found at i:64648864 original size:40 final size:40
Alignment explanation
Indices: 64648800--64649117 Score: 345
Period size: 40 Copynumber: 8.0 Consensus size: 40
64648790 AGTTCAGTGA
* * * *
64648800 GTTATATCCGGGCTAAGCCCCGAAGGGCATTTGTGCCGAT
1 GTTATATCCGGGTTAAGACCCGAAGAGCATTCGTGCCGAT
* * * * * *
64648840 GCTATATCCGGGTTAAGTCTCGAAGAGCATCCGTGCTGGT
1 GTTATATCCGGGTTAAGACCCGAAGAGCATTCGTGCCGAT
* * *
64648880 GTTATACCCAGGTTAAGACCCGAAGAGCATTCGTG-CTAGT
1 GTTATATCCGGGTTAAGACCCGAAGAGCATTCGTGCCGA-T
* * *
64648920 GTTATATCCGGGTTAAGTCCCGAAGAGCATTCGTGCTGGT
1 GTTATATCCGGGTTAAGACCCGAAGAGCATTCGTGCCGAT
* *
64648960 GTTATACCCGGGTTAAGACCCGAAGAGCATTCGTG-CTAGT
1 GTTATATCCGGGTTAAGACCCGAAGAGCATTCGTGCCGA-T
* * *
64649000 GTTATATCCGGGTTAAGTCCCGAAGAGCATTCGTGCTGGT
1 GTTATATCCGGGTTAAGACCCGAAGAGCATTCGTGCCGAT
* * *
64649040 GTTATACCCGGGTTAAGACCCGAAGAGCATTCATG-CTAGT
1 GTTATATCCGGGTTAAGACCCGAAGAGCATTCGTGCCGA-T
* * *
64649080 GTTATATCCGAGCTAAGTCCCGAAGAGCATTCGTGCCG
1 GTTATATCCGGGTTAAGACCCGAAGAGCATTCGTGCCG
64649118 GTGATGTGTA
Statistics
Matches: 226, Mismatches: 46, Indels: 11
0.80 0.16 0.04
Matches are distributed among these distances:
40 225 1.00
41 1 0.00
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
GTTATATCCGGGTTAAGACCCGAAGAGCATTCGTGCCGAT
Found at i:64648933 original size:80 final size:80
Alignment explanation
Indices: 64648800--64649120 Score: 500
Period size: 80 Copynumber: 4.0 Consensus size: 80
64648790 AGTTCAGTGA
* * * * * * * *
64648800 GTTATATCCGGGCTAAGCCCCGAAGGGCATTTGTGC-CGATGCTATATCCGGGTTAAGTCTCGAA
1 GTTATACCCGGGTTAAGACCCGAAGAGCATTCGTGCTAG-TGTTATATCCGGGTTAAGTCCCGAA
*
64648864 GAGCATCCGTGCTGGT
65 GAGCATTCGTGCTGGT
*
64648880 GTTATACCCAGGTTAAGACCCGAAGAGCATTCGTGCTAGTGTTATATCCGGGTTAAGTCCCGAAG
1 GTTATACCCGGGTTAAGACCCGAAGAGCATTCGTGCTAGTGTTATATCCGGGTTAAGTCCCGAAG
64648945 AGCATTCGTGCTGGT
66 AGCATTCGTGCTGGT
64648960 GTTATACCCGGGTTAAGACCCGAAGAGCATTCGTGCTAGTGTTATATCCGGGTTAAGTCCCGAAG
1 GTTATACCCGGGTTAAGACCCGAAGAGCATTCGTGCTAGTGTTATATCCGGGTTAAGTCCCGAAG
64649025 AGCATTCGTGCTGGT
66 AGCATTCGTGCTGGT
* * *
64649040 GTTATACCCGGGTTAAGACCCGAAGAGCATTCATGCTAGTGTTATATCCGAGCTAAGTCCCGAAG
1 GTTATACCCGGGTTAAGACCCGAAGAGCATTCGTGCTAGTGTTATATCCGGGTTAAGTCCCGAAG
*
64649105 AGCATTCGTGCCGGT
66 AGCATTCGTGCTGGT
64649120 G
1 G
64649121 ATGTGTATTC
Statistics
Matches: 225, Mismatches: 15, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
80 224 1.00
81 1 0.00
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.26
Consensus pattern (80 bp):
GTTATACCCGGGTTAAGACCCGAAGAGCATTCGTGCTAGTGTTATATCCGGGTTAAGTCCCGAAG
AGCATTCGTGCTGGT
Found at i:64649014 original size:120 final size:120
Alignment explanation
Indices: 64648800--64649115 Score: 434
Period size: 120 Copynumber: 2.6 Consensus size: 120
64648790 AGTTCAGTGA
* * * * * * * *
64648800 GTTATATCCGGGCTAAGCCCCGAAGGGCATTTGTGCCGATGCTATATCCGGGTTAAGTCTCGAAG
1 GTTATATCCGGGTTAAGACCCGAAGAGCATTCGTGCTGGTGTTATATCCGGGTTAAGTCCCGAAG
* *
64648865 AGCATCCGTGCTGGTGTTATACCCAGGTTAAGACCCGAAGAGCATTCGTGCTAGT
66 AGCATTCGTGCTAGTGTTATACCCAGGTTAAGACCCGAAGAGCATTCGTGCTAGT
* * *
64648920 GTTATATCCGGGTTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATACCCGGGTTAAGACCCGAAG
1 GTTATATCCGGGTTAAGACCCGAAGAGCATTCGTGCTGGTGTTATATCCGGGTTAAGTCCCGAAG
* * * *
64648985 AGCATTCGTGCTAGTGTTATATCCGGGTTAAGTCCCGAAGAGCATTCGTGCTGGT
66 AGCATTCGTGCTAGTGTTATACCCAGGTTAAGACCCGAAGAGCATTCGTGCTAGT
* * * * *
64649040 GTTATACCCGGGTTAAGACCCGAAGAGCATTCATGCTAGTGTTATATCCGAGCTAAGTCCCGAAG
1 GTTATATCCGGGTTAAGACCCGAAGAGCATTCGTGCTGGTGTTATATCCGGGTTAAGTCCCGAAG
64649105 AGCATTCGTGC
66 AGCATTCGTGC
64649116 CGGTGATGTG
Statistics
Matches: 172, Mismatches: 24, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
120 172 1.00
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (120 bp):
GTTATATCCGGGTTAAGACCCGAAGAGCATTCGTGCTGGTGTTATATCCGGGTTAAGTCCCGAAG
AGCATTCGTGCTAGTGTTATACCCAGGTTAAGACCCGAAGAGCATTCGTGCTAGT
Found at i:64649187 original size:43 final size:43
Alignment explanation
Indices: 64649108--64649191 Score: 123
Period size: 43 Copynumber: 2.0 Consensus size: 43
64649098 CCCGAAGAGC
* * * *
64649108 ATTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGG
1 ATTCATGCCGGTGATATGTATTCAGGCCTTCATGCCTAGCAGG
*
64649151 ATTCATGCCGGTGATATGTATTCAGGCTTTCATGCCTAGCA
1 ATTCATGCCGGTGATATGTATTCAGGCCTTCATGCCTAGCA
64649192 AGCTTAATGC
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 36 1.00
ACGTcount: A:0.17, C:0.23, G:0.29, T:0.32
Consensus pattern (43 bp):
ATTCATGCCGGTGATATGTATTCAGGCCTTCATGCCTAGCAGG
Found at i:64649207 original size:43 final size:43
Alignment explanation
Indices: 64649113--64649208 Score: 120
Period size: 43 Copynumber: 2.2 Consensus size: 43
64649103 AGAGCATTCG
* * * * *
64649113 TGCCGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGATTCA
1 TGCCGGTGATATGTATTCAGGCCTTCATGCCTAGCAAGATTAA
* *
64649156 TGCCGGTGATATGTATTCAGGCTTTCATGCCTAGCAAGCTTAA
1 TGCCGGTGATATGTATTCAGGCCTTCATGCCTAGCAAGATTAA
*
64649199 TGCTGGTGAT
1 TGCCGGTGAT
64649209 CTGAGCAAAG
Statistics
Matches: 45, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
43 45 1.00
ACGTcount: A:0.18, C:0.21, G:0.29, T:0.32
Consensus pattern (43 bp):
TGCCGGTGATATGTATTCAGGCCTTCATGCCTAGCAAGATTAA
Found at i:64649399 original size:54 final size:57
Alignment explanation
Indices: 64649340--64649459 Score: 165
Period size: 58 Copynumber: 2.1 Consensus size: 57
64649330 ATGAATAAGG
* *
64649340 GCACTATGTGTGTGA-A-CGAT-TTGAGGCATTGTGTGTGCAAATTCCTTTAACCGA
1 GCACTATGTGGGTGAGATCGATATTGAGGCACTGTGTGTGCAAATTCCTTTAACCGA
* *
64649394 GCACTATGTGGGTGAGATCGATAATTGAGGCACTGTGTGTGCGAATTTCTTTAACCGA
1 GCACTATGTGGGTGAGATCGAT-ATTGAGGCACTGTGTGTGCAAATTCCTTTAACCGA
*
64649452 GTACTATG
1 GCACTATG
64649460 AGTGCAAGAT
Statistics
Matches: 57, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
54 14 0.25
55 1 0.02
56 4 0.07
58 38 0.67
ACGTcount: A:0.24, C:0.16, G:0.28, T:0.33
Consensus pattern (57 bp):
GCACTATGTGGGTGAGATCGATATTGAGGCACTGTGTGTGCAAATTCCTTTAACCGA
Found at i:64651637 original size:13 final size:13
Alignment explanation
Indices: 64651619--64651643 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
64651609 AAATGGTATA
64651619 TTGAATCCATGAT
1 TTGAATCCATGAT
64651632 TTGAATCCATGA
1 TTGAATCCATGA
64651644 AAATTTAGTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TTGAATCCATGAT
Found at i:64653544 original size:25 final size:25
Alignment explanation
Indices: 64653516--64653594 Score: 85
Period size: 25 Copynumber: 3.3 Consensus size: 25
64653506 CTAATGGCCG
64653516 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
* * * *
64653541 ATGTGAT-AAGGCCGAATG-GCA-A-
1 ATGTGATGAATG-TGAAAGTGTATAT
64653563 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
64653588 ATGTGAT
1 ATGTGAT
64653595 AAGGCCTAAT
Statistics
Matches: 41, Mismatches: 8, Indels: 10
0.69 0.14 0.17
Matches are distributed among these distances:
22 11 0.27
23 6 0.15
24 6 0.15
25 18 0.44
ACGTcount: A:0.35, C:0.04, G:0.29, T:0.32
Consensus pattern (25 bp):
ATGTGATGAATGTGAAAGTGTATAT
Found at i:64653544 original size:47 final size:47
Alignment explanation
Indices: 64653491--64653644 Score: 272
Period size: 47 Copynumber: 3.3 Consensus size: 47
64653481 ACAATATATG
64653491 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
* **
64653538 TATATGTGATAAGGCCGAATGGCAAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
*
64653585 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGGGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
64653632 TATATGTGATAAG
1 TATATGTGATAAG
64653645 TCCCGAAGGA
Statistics
Matches: 100, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 100 1.00
ACGTcount: A:0.34, C:0.07, G:0.30, T:0.29
Consensus pattern (47 bp):
TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
Found at i:64664171 original size:15 final size:15
Alignment explanation
Indices: 64664151--64664181 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
64664141 CTTTGAAGGC
64664151 CCATCTAAAAGACGT
1 CCATCTAAAAGACGT
64664166 CCATCTAAAAGACGT
1 CCATCTAAAAGACGT
64664181 C
1 C
64664182 ATGACATGTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.39, C:0.29, G:0.13, T:0.19
Consensus pattern (15 bp):
CCATCTAAAAGACGT
Found at i:64674496 original size:45 final size:45
Alignment explanation
Indices: 64674441--64674530 Score: 153
Period size: 45 Copynumber: 2.0 Consensus size: 45
64674431 AATTATGTGG
64674441 TTTGAACTCATTGAGTTGTGCTCTGAGTTCATGACATATGTGACA
1 TTTGAACTCATTGAGTTGTGCTCTGAGTTCATGACATATGTGACA
* **
64674486 TTTGAACTCATTGAGTTGTGGTCTGAGTTCATGATGTATGTGACA
1 TTTGAACTCATTGAGTTGTGCTCTGAGTTCATGACATATGTGACA
64674531 CATGTTTTGG
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.23, C:0.13, G:0.24, T:0.39
Consensus pattern (45 bp):
TTTGAACTCATTGAGTTGTGCTCTGAGTTCATGACATATGTGACA
Found at i:64683330 original size:57 final size:56
Alignment explanation
Indices: 64683255--64683361 Score: 142
Period size: 57 Copynumber: 1.9 Consensus size: 56
64683245 TCTCATTATT
* * *
64683255 ATTTCCATTTCCATTTTGGACAAAACCATATTGATTTCCAAATGATTTCATCTCTCC
1 ATTTCCATTTCCATTTTGGACAAAAACATAATCATTTCCAAATG-TTTCATCTCTCC
* * * *
64683312 ATTTTCATTTTCATTTTGGAGAAAAACTTAATCATTTCCAAATGTTTCAT
1 ATTTCCATTTCCATTTTGGACAAAAACATAATCATTTCCAAATGTTTCAT
64683362 ATTTTTCCAT
Statistics
Matches: 43, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
56 6 0.14
57 37 0.86
ACGTcount: A:0.30, C:0.20, G:0.07, T:0.43
Consensus pattern (56 bp):
ATTTCCATTTCCATTTTGGACAAAAACATAATCATTTCCAAATGTTTCATCTCTCC
Found at i:64688796 original size:48 final size:48
Alignment explanation
Indices: 64688740--64688981 Score: 439
Period size: 48 Copynumber: 5.0 Consensus size: 48
64688730 CAAGATAAAT
64688740 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
64688788 ATATGTATATGTGATAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
64688836 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
64688884 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAA
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* * *
64688932 ATATGTATATGTGGTAAAGCCGAAGGGCTAGTGTGAAATATGTAGGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
64688980 AT
1 AT
64688982 GTGTGTATAT
Statistics
Matches: 187, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 187 1.00
ACGTcount: A:0.36, C:0.06, G:0.27, T:0.31
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
Found at i:64691502 original size:43 final size:42
Alignment explanation
Indices: 64691454--64691680 Score: 373
Period size: 43 Copynumber: 5.3 Consensus size: 42
64691444 TTATTTGATA
64691454 AAACGCCGCTAAAGATCATGACCTTTAGCGGCGCTTTTTCCAC
1 AAACGCCGCTAAAGATCATGACCTTTAGCGGCGC-TTTTCCAC
* *
64691497 AAACGCCACTAAAGATCATGACCTTTAGCGGCGCTTTCCCAC
1 AAACGCCGCTAAAGATCATGACCTTTAGCGGCGCTTTTCCAC
*
64691539 AAAAGCCGCTAAAGATCATGACCTTTAGCGGCGCTTTTCCTAC
1 AAACGCCGCTAAAGATCATGACCTTTAGCGGCGCTTTTCC-AC
64691582 AAACGCCGCTAAAGATCATGACCTTTAGCGGCGCTTTTCCTAC
1 AAACGCCGCTAAAGATCATGACCTTTAGCGGCGCTTTTCC-AC
* *
64691625 AAACGCCGCTAAAGATCATGACCTTTAGCGACGCTTTTTCTAC
1 AAACGCCGCTAAAGATCATGACCTTTAGCGGCGC-TTTTCCAC
64691668 AAACGCCGCTAAA
1 AAACGCCGCTAAA
64691681 CATGCATGCA
Statistics
Matches: 174, Mismatches: 8, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
42 44 0.25
43 125 0.72
44 5 0.03
ACGTcount: A:0.28, C:0.30, G:0.18, T:0.24
Consensus pattern (42 bp):
AAACGCCGCTAAAGATCATGACCTTTAGCGGCGCTTTTCCAC
Found at i:64691561 original size:85 final size:86
Alignment explanation
Indices: 64691453--64691680 Score: 379
Period size: 85 Copynumber: 2.7 Consensus size: 86
64691443 TTTATTTGAT
*
64691453 AAAACGCCGCTAAAGATCATGACCTTTAGCGGCGCTTTTTCCACAAACGCCACTAAAGATCATGA
1 AAAA-GCCGCTAAAGATCATGACCTTTAGCGGCGCTTTTTCCACAAACGCCGCTAAAGATCATGA
64691518 CCTTTAGCGGCGC-TTTCCCAC
65 CCTTTAGCGGCGCTTTTCCCAC
64691539 AAAAGCCGCTAAAGATCATGACCTTTAGCGGCGC-TTTTCCTACAAACGCCGCTAAAGATCATGA
1 AAAAGCCGCTAAAGATCATGACCTTTAGCGGCGCTTTTTCC-ACAAACGCCGCTAAAGATCATGA
*
64691603 CCTTTAGCGGCGCTTTTCCTAC
65 CCTTTAGCGGCGCTTTTCCCAC
* * *
64691625 AAACGCCGCTAAAGATCATGACCTTTAGCGACGCTTTTTCTACAAACGCCGCTAAA
1 AAAAGCCGCTAAAGATCATGACCTTTAGCGGCGCTTTTTCCACAAACGCCGCTAAA
64691681 CATGCATGCA
Statistics
Matches: 134, Mismatches: 5, Indels: 6
0.92 0.03 0.04
Matches are distributed among these distances:
84 6 0.04
85 65 0.49
86 58 0.43
87 5 0.04
ACGTcount: A:0.29, C:0.30, G:0.18, T:0.24
Consensus pattern (86 bp):
AAAAGCCGCTAAAGATCATGACCTTTAGCGGCGCTTTTTCCACAAACGCCGCTAAAGATCATGAC
CTTTAGCGGCGCTTTTCCCAC
Found at i:64692276 original size:17 final size:16
Alignment explanation
Indices: 64692237--64692276 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 16
64692227 CCCACATATC
*
64692237 TCACCAAAACACGTAT
1 TCACCAAAACACGGAT
*
64692253 TCGCCAAAACACAGGAT
1 TCACCAAAACAC-GGAT
64692270 TCACCAA
1 TCACCAA
64692277 TTGGTGCATA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
16 11 0.55
17 9 0.45
ACGTcount: A:0.42, C:0.33, G:0.10, T:0.15
Consensus pattern (16 bp):
TCACCAAAACACGGAT
Found at i:64695087 original size:30 final size:30
Alignment explanation
Indices: 64695053--64695112 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
64695043 ATTTTTGAGC
* * *
64695053 CTAGGGGCAAAATGATCATTTTATCAAAGA
1 CTAGGGGAAAAATAATCATTTTACCAAAGA
*
64695083 CTAGGGGAAAAATAATCGTTTTACCAAAGA
1 CTAGGGGAAAAATAATCATTTTACCAAAGA
64695113 TATGAATTTT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.42, C:0.13, G:0.20, T:0.25
Consensus pattern (30 bp):
CTAGGGGAAAAATAATCATTTTACCAAAGA
Found at i:64695508 original size:46 final size:45
Alignment explanation
Indices: 64695450--64695671 Score: 170
Period size: 46 Copynumber: 4.8 Consensus size: 45
64695440 TCACTTGTGT
*
64695450 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTA-GA
*
64695496 GAGCCAGTGTAAGACCATGTCTGTGACATGGCATC-G--ACATTGAGA
1 GAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCACATT-AGA
* * * *
64695541 CGAGTGCTAGTGTAAGACATGTCTGGGACATGCTTCGGCCTC--GAGA
1 -GA--GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTAGA
* * *
64695587 CGTAAGCCAGTGTAAGACATGTCTGGGACATGCATCAGCTAC--GAGA
1 -G--AGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTAGA
* * *
64695633 TGTGTCAGTATAAGACCATGTCTGGGACATGGCATCGGC
1 -GAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC
64695672 ACAGATATGC
Statistics
Matches: 146, Mismatches: 17, Indels: 26
0.77 0.09 0.14
Matches are distributed among these distances:
44 10 0.07
45 21 0.14
46 69 0.47
47 28 0.19
48 17 0.12
49 1 0.01
ACGTcount: A:0.27, C:0.21, G:0.30, T:0.23
Consensus pattern (45 bp):
GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTAGA
Found at i:64695694 original size:140 final size:140
Alignment explanation
Indices: 64695455--64695713 Score: 317
Period size: 140 Copynumber: 1.8 Consensus size: 140
64695445 TGTGTGAGCT
* * * *
64695455 AGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGAGCCAGTGTAAGACCATGTCTGT
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCACATGAT-AGAGCCAGTATAAGACCATGTCTGG
** ** *
64695520 GACATGGCATCGACATTGAGACGAGTGCTAGTGTAAGA-CATGTCTGGGACATGCTTCGGCCTCG
65 GACATGGCATCGACACAGAGACGAGAACTAGTGTAAGACCATGTCTGGAACATGCTTCGGCCTCG
64695584 AGACGTAAGCC
130 AGACGTAAGCC
* * *
64695595 AGTGTAAGACATGTCTGGGACATGCATCAGCTACGA-GAT-GTGTCAGTATAAGACCATGTCTGG
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCAC-ATGATAGAGCCAGTATAAGACCATGTCTGG
* * * *
64695658 GACATGGCATCGGCACAGATATGCTAGAACTTGTGTAAGACCATGTCTGGAACATG
65 GACATGGCATCGACACAGAGA--CGAGAACTAGTGTAAGACCATGTCTGGAACATG
64695714 GCATCGGCAC
Statistics
Matches: 99, Mismatches: 16, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
138 37 0.37
140 47 0.47
141 15 0.15
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.24
Consensus pattern (140 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGCCACATGATAGAGCCAGTATAAGACCATGTCTGGG
ACATGGCATCGACACAGAGACGAGAACTAGTGTAAGACCATGTCTGGAACATGCTTCGGCCTCGA
GACGTAAGCC
Found at i:64697367 original size:26 final size:27
Alignment explanation
Indices: 64697308--64697367 Score: 77
Period size: 27 Copynumber: 2.2 Consensus size: 27
64697298 GGACATGTTG
* *
64697308 AATTCTAGCATGCATTCGGACACTTAAA
1 AATTC-AGCATACATTCGAACACTTAAA
64697336 AATTCAGCATACATTCGAACA-TTAAA
1 AATTCAGCATACATTCGAACACTTAAA
*
64697362 ATTTCA
1 AATTCA
64697368 CTAGCTGACA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
26 10 0.34
27 14 0.48
28 5 0.17
ACGTcount: A:0.40, C:0.20, G:0.10, T:0.30
Consensus pattern (27 bp):
AATTCAGCATACATTCGAACACTTAAA
Found at i:64703544 original size:13 final size:13
Alignment explanation
Indices: 64703528--64703552 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
64703518 ATTGGAGTGA
64703528 CAAGTTGGCTATT
1 CAAGTTGGCTATT
64703541 CAAGTTGGCTAT
1 CAAGTTGGCTAT
64703553 GTTGCACGGC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.16, G:0.24, T:0.36
Consensus pattern (13 bp):
CAAGTTGGCTATT
Found at i:64706317 original size:123 final size:123
Alignment explanation
Indices: 64706098--64706345 Score: 487
Period size: 123 Copynumber: 2.0 Consensus size: 123
64706088 ACCTAATTTA
64706098 ATAAACAAATTATAGCTTTAAAATTCTGATCACGCGGTTGCTGACATCATTTTTTAGTCATGCTT
1 ATAAACAAATTATAGCTTTAAAATTCTGATCACGCGGTTGCTGACATCATTTTTTAGTCATGCTT
64706163 ACATCATTACGTTGCGACATCAACCTTGTTCTTAGCCCTTGATGCTTCGAAGTTCAGT
66 ACATCATTACGTTGCGACATCAACCTTGTTCTTAGCCCTTGATGCTTCGAAGTTCAGT
64706221 ATAAACAAATTATAGCTTTAAAATTCTGATCACGCGGTTGCTGACATCATTTTTTAGTCATGCTT
1 ATAAACAAATTATAGCTTTAAAATTCTGATCACGCGGTTGCTGACATCATTTTTTAGTCATGCTT
*
64706286 ACATCATTACGTTGCGACATCAGCCTTGTTCTTAGCCCTTGATGCTTCGAAGTTCAGT
66 ACATCATTACGTTGCGACATCAACCTTGTTCTTAGCCCTTGATGCTTCGAAGTTCAGT
64706344 AT
1 AT
64706346 CACGACGCCG
Statistics
Matches: 124, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
123 124 1.00
ACGTcount: A:0.27, C:0.21, G:0.16, T:0.37
Consensus pattern (123 bp):
ATAAACAAATTATAGCTTTAAAATTCTGATCACGCGGTTGCTGACATCATTTTTTAGTCATGCTT
ACATCATTACGTTGCGACATCAACCTTGTTCTTAGCCCTTGATGCTTCGAAGTTCAGT
Found at i:64710577 original size:22 final size:22
Alignment explanation
Indices: 64710549--64710670 Score: 61
Period size: 22 Copynumber: 5.3 Consensus size: 22
64710539 TTCCACATCC
64710549 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
** * * *
64710571 ATCACATATATACACTTTC-ACATT
1 ATCACAT-T-GGC-CATTCGGCCTT
64710595 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
* * * *
64710618 ATCTCATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
64710642 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
64710665 ATCACA
1 ATCACA
64710671 CATACACATG
Statistics
Matches: 70, Mismatches: 18, Indels: 24
0.62 0.16 0.21
Matches are distributed among these distances:
22 26 0.37
23 12 0.17
24 12 0.17
25 20 0.29
ACGTcount: A:0.25, C:0.30, G:0.11, T:0.34
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:64710584 original size:47 final size:47
Alignment explanation
Indices: 64710521--64710924 Score: 600
Period size: 47 Copynumber: 8.6 Consensus size: 47
64710511 CCCTTCGGGA
* * *
64710521 CTTATCACATTTATACACTTCCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
64710568 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
64710615 CTTATCTCATATATGCA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
64710662 CTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
64710709 CTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
*
64710756 CTTGTCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
64710805 CTTAT-ACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * *
64710851 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
64710898 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
64710925 TATTCAAATA
Statistics
Matches: 336, Mismatches: 16, Indels: 10
0.93 0.04 0.03
Matches are distributed among these distances:
46 43 0.13
47 251 0.75
48 2 0.01
49 39 0.12
50 1 0.00
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:64712321 original size:85 final size:85
Alignment explanation
Indices: 64712192--64712370 Score: 340
Period size: 85 Copynumber: 2.1 Consensus size: 85
64712182 TATTTTATTG
*
64712192 CCCATGCCCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
64712257 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
*
64712277 CCCATGCTCTTTATTTTATTAATCCTTATATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
64712342 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
64712362 CCCATGCTC
1 CCCATGCTC
64712371 ATGGCCGGCC
Statistics
Matches: 92, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
85 92 1.00
ACGTcount: A:0.26, C:0.27, G:0.08, T:0.38
Consensus pattern (85 bp):
CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
TAGCCATAACATCTTGTCCA
Found at i:64724504 original size:48 final size:46
Alignment explanation
Indices: 64724297--64724554 Score: 159
Period size: 49 Copynumber: 5.5 Consensus size: 46
64724287 GTCGATGCTG
* *
64724297 TGTCCCAGACAGGTCTTACACT-GACTTTAATATATCGAGGCCGATGCCA
1 TGTCCCAGACATGTCTTACACTAG-CTTTCATA-AT-GAGGCCGATG-CA
* * * * * * *
64724346 CGTCGCAGACAGGTCTTACGCTGGCTTTCATCAATCAGTGTCGATGCCA
1 TGTCCCAGACATGTCTTACACTAGCTTTCAT-AATGAG-GCCGATG-CA
* * * * * **
64724395 TGTCTCAGACAGGTCTTACACT-GAC--ACATAA-CAAGTTGATGCCA
1 TGTCCCAGACATGTCTTACACTAG-CTTTCATAATGAGGCCGATG-CA
** * * *
64724439 TGTCTTAGACAGGTCTTACGCTAGCTTAT-ATATCTCGAGGCCGATGCA
1 TGTCCCAGACATGTCTTACACTAGCTT-TCATA-AT-GAGGCCGATGCA
*
64724487 TGTCCCAGACATGTCTTACACTAGCTTTCATAATGTGGCCGATGCA
1 TGTCCCAGACATGTCTTACACTAGCTTTCATAATGAGGCCGATGCA
*
64724533 TGTCCCAGATATGTCTTACACT
1 TGTCCCAGACATGTCTTACACT
64724555 GGCTCACATA
Statistics
Matches: 170, Mismatches: 27, Indels: 27
0.76 0.12 0.12
Matches are distributed among these distances:
44 30 0.18
45 3 0.02
46 37 0.22
47 5 0.03
48 31 0.18
49 62 0.36
50 2 0.01
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.29
Consensus pattern (46 bp):
TGTCCCAGACATGTCTTACACTAGCTTTCATAATGAGGCCGATGCA
Found at i:64727163 original size:18 final size:18
Alignment explanation
Indices: 64727140--64727175 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
64727130 TCCCCGAGTG
64727140 ATAGTCGATTATCAACTC
1 ATAGTCGATTATCAACTC
**
64727158 ATAGTCTTTTATCAACTC
1 ATAGTCGATTATCAACTC
64727176 TGACCGTTGT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.31, C:0.22, G:0.08, T:0.39
Consensus pattern (18 bp):
ATAGTCGATTATCAACTC
Found at i:64730595 original size:21 final size:21
Alignment explanation
Indices: 64730566--64730626 Score: 97
Period size: 21 Copynumber: 3.0 Consensus size: 21
64730556 CTTTTAAAAT
64730566 AGGGC-ACACACCCGTGTGGA
1 AGGGCAACACACCCGTGTGGA
*
64730586 AGGGTAACACACCCGTGTGGA
1 AGGGCAACACACCCGTGTGGA
*
64730607 AGGGCAACACGCCCGTGTGG
1 AGGGCAACACACCCGTGTGG
64730627 CCACTATGAC
Statistics
Matches: 37, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
20 4 0.11
21 33 0.89
ACGTcount: A:0.25, C:0.28, G:0.36, T:0.11
Consensus pattern (21 bp):
AGGGCAACACACCCGTGTGGA
Found at i:64732012 original size:48 final size:49
Alignment explanation
Indices: 64731894--64732019 Score: 157
Period size: 49 Copynumber: 2.6 Consensus size: 49
64731884 GCACATTAAA
** * * *
64731894 GTCGATGCCGCGTCCCAGACAAGTCTTACACTGACTTTCATATATCGAG
1 GTCGATGCCATGTCCCAGACAGGTCTTACACTGACTCTCATACATCGAG
*
64731943 GTCGATGCCATGTCCCAGACAGGTCTTACACTGGCTCTCAT-CATCG-G
1 GTCGATGCCATGTCCCAGACAGGTCTTACACTGACTCTCATACATCGAG
**
64731990 TGTCGATGCCATGTCTTAGACAGGTCTTAC
1 -GTCGATGCCATGTCCCAGACAGGTCTTAC
64732020 GTTAGCTTGT
Statistics
Matches: 68, Mismatches: 8, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
47 1 0.01
48 31 0.46
49 36 0.53
ACGTcount: A:0.21, C:0.29, G:0.22, T:0.28
Consensus pattern (49 bp):
GTCGATGCCATGTCCCAGACAGGTCTTACACTGACTCTCATACATCGAG
Found at i:64735226 original size:22 final size:23
Alignment explanation
Indices: 64735183--64735227 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
64735173 TTAAAAAATT
64735183 ATTTTATTTTCTATCGTTTTTTA
1 ATTTTATTTTCTATCGTTTTTTA
64735206 ATTTTATTTT-TAAT-GTTTTTTA
1 ATTTTATTTTCT-ATCGTTTTTTA
64735228 TCCTGATTAA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
22 9 0.43
23 12 0.57
ACGTcount: A:0.20, C:0.04, G:0.04, T:0.71
Consensus pattern (23 bp):
ATTTTATTTTCTATCGTTTTTTA
Found at i:64739079 original size:6 final size:7
Alignment explanation
Indices: 64739062--64739087 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
64739052 AGAAACGAAA
64739062 AAAAATT
1 AAAAATT
64739069 AAAAATT
1 AAAAATT
64739076 AAAAATT
1 AAAAATT
64739083 AAAAA
1 AAAAA
64739088 AGCTGGATCT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (7 bp):
AAAAATT
Found at i:64740883 original size:30 final size:31
Alignment explanation
Indices: 64740833--64740893 Score: 115
Period size: 30 Copynumber: 2.0 Consensus size: 31
64740823 GGTATGTGTA
64740833 AGTTTAGGAGAGGAAAAAAAATATTTCTCTG
1 AGTTTAGGAGAGGAAAAAAAATATTTCTCTG
64740864 AGTTTAGGAGAGG-AAAAAAATATTTCTCTG
1 AGTTTAGGAGAGGAAAAAAAATATTTCTCTG
64740894 TATTGAATTA
Statistics
Matches: 30, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
30 17 0.57
31 13 0.43
ACGTcount: A:0.41, C:0.07, G:0.23, T:0.30
Consensus pattern (31 bp):
AGTTTAGGAGAGGAAAAAAAATATTTCTCTG
Found at i:64742295 original size:84 final size:85
Alignment explanation
Indices: 64742146--64742364 Score: 381
Period size: 84 Copynumber: 2.6 Consensus size: 85
64742136 GAACCACACT
* *
64742146 GTTTAGGAAAGCATTCTTTACA-CTCAACTACTGGAGAGAG-CAATCCAAGTGATAGGTCCATAT
1 GTTTAGGAAAGCATTCTTTACATC-CAAATGCTGGAGAG-GCCAATCCAAGTGATAGGTCCATAT
64742209 AAACTTCCTCTAGTAGATTGTA
64 AAACTTCCTCTAGTAGATTGTA
64742231 GTTTAGG-AAGCATTCTTTACATCCAAATGCTGGAGAGGCCAATCCAAGTGATAGGTCCATATAA
1 GTTTAGGAAAGCATTCTTTACATCCAAATGCTGGAGAGGCCAATCCAAGTGATAGGTCCATATAA
64742295 ACTTCCTCTAGTAGATTGTA
66 ACTTCCTCTAGTAGATTGTA
64742315 GTTTAGGAAAGCATTCTTTACATCCAAATGCTGGAGAGGCCAATCCAAGT
1 GTTTAGGAAAGCATTCTTTACATCCAAATGCTGGAGAGGCCAATCCAAGT
64742365 AAGCTGTAAT
Statistics
Matches: 129, Mismatches: 2, Indels: 6
0.94 0.01 0.04
Matches are distributed among these distances:
83 1 0.01
84 78 0.60
85 50 0.39
ACGTcount: A:0.32, C:0.19, G:0.20, T:0.29
Consensus pattern (85 bp):
GTTTAGGAAAGCATTCTTTACATCCAAATGCTGGAGAGGCCAATCCAAGTGATAGGTCCATATAA
ACTTCCTCTAGTAGATTGTA
Found at i:64742608 original size:42 final size:42
Alignment explanation
Indices: 64742549--64742637 Score: 142
Period size: 42 Copynumber: 2.1 Consensus size: 42
64742539 TCCTAATTGG
* *
64742549 GAAAATAGTTCCCTTATTCTAATAAACTACTAAAATATAAAA
1 GAAAATAATTCCCTTATTCTAATAAACTACTAAAAGATAAAA
*
64742591 GAAAATAATTCCCTTATTTTAATAAACTACTAAAAGATAAAA
1 GAAAATAATTCCCTTATTCTAATAAACTACTAAAAGATAAAA
*
64742633 TAAAA
1 GAAAA
64742638 ATACTCCTAG
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.53, C:0.12, G:0.04, T:0.30
Consensus pattern (42 bp):
GAAAATAATTCCCTTATTCTAATAAACTACTAAAAGATAAAA
Found at i:64742684 original size:19 final size:18
Alignment explanation
Indices: 64742662--64742701 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 18
64742652 TGAATAAAAC
64742662 TTATCTACCTAA-ATAAGAT
1 TTATCTACC-AATATAA-AT
64742681 TTATCTACCAATATAAAT
1 TTATCTACCAATATAAAT
64742699 TTA
1 TTA
64742702 AAATATATAC
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
18 7 0.35
19 13 0.65
ACGTcount: A:0.42, C:0.15, G:0.03, T:0.40
Consensus pattern (18 bp):
TTATCTACCAATATAAAT
Found at i:64746551 original size:42 final size:42
Alignment explanation
Indices: 64746504--64746592 Score: 151
Period size: 42 Copynumber: 2.1 Consensus size: 42
64746494 TCCTAATTGG
*
64746504 GAAAATAGTTCACTTATTCTAATAAACTACTAAAATATAAAA
1 GAAAATAGTTCACTTATTCTAATAAACTACTAAAAGATAAAA
*
64746546 GAAAATAGTTCCCTTATTCTAATAAACTACTAAAAGATAAAA
1 GAAAATAGTTCACTTATTCTAATAAACTACTAAAAGATAAAA
*
64746588 TAAAA
1 GAAAA
64746593 ATATTCCTAG
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
42 44 1.00
ACGTcount: A:0.53, C:0.12, G:0.06, T:0.29
Consensus pattern (42 bp):
GAAAATAGTTCACTTATTCTAATAAACTACTAAAAGATAAAA
Found at i:64746613 original size:43 final size:42
Alignment explanation
Indices: 64746505--64746614 Score: 98
Period size: 42 Copynumber: 2.6 Consensus size: 42
64746495 CCTAATTGGG
* * * * * *
64746505 AAAATAGTTCACTTATTCTAATAAACTACTAAAATATAAAAG
1 AAAATAGTTCCCTGAATATAATAAACTACTAAAAGATAAAAA
* * *
64746547 AAAATAGTTCCCTTATTCTAATAAACTACTAAAAGATAAAATA
1 AAAATAGTTCCCTGAATATAATAAACTACTAAAAGATAAAA-A
64746590 AAAATA-TT-CCTAGAATATGAATAAA
1 AAAATAGTTCCCT-GAATAT-AATAAA
64746615 ACTTATCTAC
Statistics
Matches: 59, Mismatches: 6, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
41 3 0.05
42 44 0.75
43 12 0.20
ACGTcount: A:0.53, C:0.12, G:0.05, T:0.30
Consensus pattern (42 bp):
AAAATAGTTCCCTGAATATAATAAACTACTAAAAGATAAAAA
Found at i:64746639 original size:19 final size:18
Alignment explanation
Indices: 64746617--64746656 Score: 71
Period size: 19 Copynumber: 2.2 Consensus size: 18
64746607 TGAATAAAAC
64746617 TTATCTACCTAAATAAGAT
1 TTATCTACCTAAATAA-AT
64746636 TTATCTACCTAAATAAAT
1 TTATCTACCTAAATAAAT
64746654 TTA
1 TTA
64746657 AAATATATAC
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 5 0.24
19 16 0.76
ACGTcount: A:0.42, C:0.15, G:0.03, T:0.40
Consensus pattern (18 bp):
TTATCTACCTAAATAAAT
Found at i:64755954 original size:46 final size:48
Alignment explanation
Indices: 64755850--64755969 Score: 154
Period size: 48 Copynumber: 2.5 Consensus size: 48
64755840 TGTCTTCGAC
** * *
64755850 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATATATAAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCATATATATATAAT
* * *
64755898 ATGGGCTTACATGGCTCATTCCTGTCTCCAAAGCCATATA-A-CTGAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCATATATATATAAT
*
64755944 ATGGACTTACATGGCTCATTTCTGTC
1 ATGGACTTACATGGCTCATTCCTGTC
64755970 CTGTCATGTC
Statistics
Matches: 63, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
46 27 0.43
47 1 0.02
48 35 0.56
ACGTcount: A:0.28, C:0.23, G:0.15, T:0.35
Consensus pattern (48 bp):
ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCATATATATATAAT
Found at i:64758542 original size:68 final size:67
Alignment explanation
Indices: 64758470--64758655 Score: 179
Period size: 67 Copynumber: 2.8 Consensus size: 67
64758460 CATCATGTGT
* * *
64758470 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC-AG-CA-TAT-ATGTAGCTAGGTCGCATGGGTGGATACAAGTGAAGGACACC
64758532 ATGTAG
62 ATGTAG
* * * *
64758538 ACAAGAGAGCTACAGGATATATGTAGCTAGGTCGCATGTGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACAGCATATATGTAGCTAGGTCGCATGGGTGGATACAAGTGAAGGACACCATGT
64758603 AG
66 AG
* *
64758605 ACAAGAGAGCTACGAG-ATAAACTG--GCTAGGTCACATGGGTGG-TACTAAGTG
1 ACAAGAGAGCTAC-AGCATATA-TGTAGCTAGGTCGCATGGGTGGATAC-AAGTG
64758656 TTCACCATGT
Statistics
Matches: 101, Mismatches: 11, Indels: 14
0.80 0.09 0.11
Matches are distributed among these distances:
64 20 0.20
65 9 0.09
66 24 0.24
67 31 0.31
68 17 0.17
ACGTcount: A:0.32, C:0.16, G:0.29, T:0.23
Consensus pattern (67 bp):
ACAAGAGAGCTACAGCATATATGTAGCTAGGTCGCATGGGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:64773021 original size:56 final size:56
Alignment explanation
Indices: 64772921--64773097 Score: 275
Period size: 56 Copynumber: 3.1 Consensus size: 56
64772911 TTTCAAACAA
* *
64772921 GGTCTTACTCGTAAACACATATCGGAAATCACATATCGATGCCAACGTATTAAATGT
1 GGTCTTACTCGCACACACATATC-GAAATCACATATCGATGCCAACGTATTAAATGT
*
64772978 GGTCTTACTTGCACACACATATCGAAATCACATATCGATGCCAACGTATTAAATGT
1 GGTCTTACTCGCACACACATATCGAAATCACATATCGATGCCAACGTATTAAATGT
* * *
64773034 GGTCTTACTCGCACACATATATC-AGAATAACATATCGATGCCAACGTATTAAACGT
1 GGTCTTACTCGCACACACATATCGA-AATCACATATCGATGCCAACGTATTAAATGT
64773090 GGTCTTAC
1 GGTCTTAC
64773098 ACGAATCAAA
Statistics
Matches: 112, Mismatches: 7, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
55 1 0.01
56 91 0.81
57 20 0.18
ACGTcount: A:0.34, C:0.23, G:0.15, T:0.28
Consensus pattern (56 bp):
GGTCTTACTCGCACACACATATCGAAATCACATATCGATGCCAACGTATTAAATGT
Found at i:64773178 original size:43 final size:43
Alignment explanation
Indices: 64773063--64773284 Score: 279
Period size: 43 Copynumber: 5.2 Consensus size: 43
64773053 TATCAGAATA
*** *
64773063 ACATATCGATGCCAACGTATTAAACGTGGTCTTACACG-AATC
1 ACATATCGATGCCAACGTCCCAGACGTGGTCTTACACGTAATC
* * ** * *
64773105 AAATA-CAATGCTGATGTCCCAGACATGGTCTTACACGTAATC
1 ACATATCGATGCCAACGTCCCAGACGTGGTCTTACACGTAATC
* * *
64773147 ACATATCGATGCCAATGTCCTAGACGTGGTCTTACACGTAACC
1 ACATATCGATGCCAACGTCCCAGACGTGGTCTTACACGTAATC
*
64773190 ATATATCGATGCCAACGTCCCAGACGTGGTCTTACACGTAATC
1 ACATATCGATGCCAACGTCCCAGACGTGGTCTTACACGTAATC
*
64773233 ACATATCGATGCCAACGTCCCAGACGTGGTCTTACACG-AGAAC
1 ACATATCGATGCCAACGTCCCAGACGTGGTCTTACACGTA-ATC
64773276 ACATATCGA
1 ACATATCGA
64773285 AAATCCTATG
Statistics
Matches: 154, Mismatches: 23, Indels: 5
0.85 0.13 0.03
Matches are distributed among these distances:
41 23 0.15
42 13 0.08
43 118 0.77
ACGTcount: A:0.31, C:0.27, G:0.18, T:0.24
Consensus pattern (43 bp):
ACATATCGATGCCAACGTCCCAGACGTGGTCTTACACGTAATC
Found at i:64781068 original size:24 final size:23
Alignment explanation
Indices: 64781022--64781115 Score: 80
Period size: 24 Copynumber: 3.9 Consensus size: 23
64781012 ATTCCTTTGC
* *
64781022 TATCCTTTTCGACCTTTTCATTGT
1 TATCCTTTTC-AACATTTCATTGT
* *
64781046 CATCATTTTCAACATTTCTATTGT
1 TATCCTTTTCAACATTTC-ATTGT
* * *
64781070 TATCCTTTTTATCATTTCCATTAT
1 TATCCTTTTCAACATTT-CATTGT
*
64781094 TATCCTTTTCAACCTTCTCATT
1 TATCCTTTTCAACATT-TCATT
64781116 TTTTTGGGGG
Statistics
Matches: 55, Mismatches: 12, Indels: 6
0.75 0.16 0.08
Matches are distributed among these distances:
23 6 0.11
24 47 0.85
25 2 0.04
ACGTcount: A:0.19, C:0.24, G:0.03, T:0.53
Consensus pattern (23 bp):
TATCCTTTTCAACATTTCATTGT
Found at i:64781506 original size:31 final size:31
Alignment explanation
Indices: 64781471--64781572 Score: 195
Period size: 31 Copynumber: 3.3 Consensus size: 31
64781461 TTATATACTT
64781471 TCCCTAAACTTTTACATTTCTTTCAATTTAG
1 TCCCTAAACTTTTACATTTCTTTCAATTTAG
*
64781502 TCCCTAAAATTTTACATTTCTTTCAATTTAG
1 TCCCTAAACTTTTACATTTCTTTCAATTTAG
64781533 TCCCTAAACTTTTACATTTCTTTCAATTTAG
1 TCCCTAAACTTTTACATTTCTTTCAATTTAG
64781564 TCCCTAAAC
1 TCCCTAAAC
64781573 CCGAAATTCT
Statistics
Matches: 69, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 69 1.00
ACGTcount: A:0.27, C:0.24, G:0.03, T:0.46
Consensus pattern (31 bp):
TCCCTAAACTTTTACATTTCTTTCAATTTAG
Done.