Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100714657
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 3970000 characters in sequence are not A, C, G, or T
File 209 of 318
Found at i:66188019 original size:45 final size:43
Alignment explanation
Indices: 66187814--66188435 Score: 410
Period size: 45 Copynumber: 13.8 Consensus size: 43
66187804 TAGGTTGAAA
* * * * * *
66187814 TAGCAAGTCTCATCTCCCTAAAGTTACAGTGGAGTAGATGGAAGA
1 TAGCAA-TCTTATCTCCCTGAAGTTGCAGTGGAGCAGAT-AAAGT
* * *
66187859 TAGCAGATCTTGTCCCCCTGAAGTTGCAGTGGAGCAGATCAAAGC
1 TAGCA-ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGAT-AAAGT
* ** * *
66187904 CA-CAATCCTTATCTCTTTGAAGTTGCAGTAGAGCAGGATAAAAT
1 TAGCAAT-CTTATCTCCCTGAAGTTGCAGTGGAGCA-GATAAAGT
* * *
66187948 TACCCAAGTCTCATCTCCCTGAAGTTGCAGTGGAGCGGACTAAAGT
1 TA-GCAA-TCTTATCTCCCTGAAGTTGCAGTGGAGCAGA-TAAAGT
* * * *
66187994 TAGCAGATCTTATCTCCCTGGAGTTGCAGTAGAGCATATCGAAG-
1 TAGCA-ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGAT-AAAGT
* * * * *
66188038 TAACAATCCTTATCTCTCTGAAGTTGCAGTAGAGTAGGATAAAAT
1 TAGCAAT-CTTATCTCCCTGAAGTTGCAGTGGAGCA-GATAAAGT
* * * * *
66188083 TACCCAAGTCTCATCTCCCTAAAGTTGCAGTAGAGCAGACTGAAGT
1 TA-GCAA-TCTTATCTCCCTGAAGTTGCAGTGGAGCAGA-TAAAGT
* *
66188129 TAGCAGATCTTATCTCCCTGAAGTTGTAGTGAAGCAGATCAAAG-
1 TAGCA-ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGAT-AAAGT
* * * *
66188173 TAACAATCCTTATCTCTCTGAAGTTGCAGTAGAGCAGGATAAAAT
1 TAGCAAT-CTTATCTCCCTGAAGTTGCAGTGGAGCA-GATAAAGT
* * ** *
66188218 TACCCAAGTCTCATCTTTCTGAAGTTGCAGTGGAGCAGACTGAAGT
1 TA-GCAA-TCTTATCTCCCTGAAGTTGCAGTGGAGCAGA-TAAAGT
* *
66188264 TAGTAGATCTTATCTCCCTGAAGTTGCAATGGAGCAGA-ACGAAGT
1 TAGCA-ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATA--AAGT
* * *
66188309 TAGTAGATCCTATCTCCCTGAAGTTGCAGTGGAGTAGA-ACGAAG-
1 TAGCA-ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATA--AAGT
* * * **
66188353 TAACAATCCTTATCTCTCTGAAGTTGCAGTAGAGCAGGATAAAAA
1 TAGCAAT-CTTATCTCCCTGAAGTTGCAGTGGAGCA-GATAAAGT
* * *
66188398 TACACGAACCGTATCTCCCTGAAGTTGCAGTGGAGCAG
1 TA-GC-AATCTTATCTCCCTGAAGTTGCAGTGGAGCAG
66188436 TTGCAGTAGA
Statistics
Matches: 460, Mismatches: 85, Indels: 64
0.76 0.14 0.11
Matches are distributed among these distances:
43 8 0.02
44 122 0.27
45 193 0.42
46 132 0.29
47 5 0.01
ACGTcount: A:0.31, C:0.20, G:0.23, T:0.26
Consensus pattern (43 bp):
TAGCAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATAAAGT
Found at i:66188356 original size:180 final size:180
Alignment explanation
Indices: 66188095--66188435 Score: 499
Period size: 180 Copynumber: 1.9 Consensus size: 180
66188085 CCCAAGTCTC
* * *
66188095 ATCTCCCTAAAGTTGCAGTAGAGCAGACTGAAGTTAGCAGATCTTATCTCCCTGAAGTTGTAGTG
1 ATCTCCCTAAAGTTGCAATAGAGCAGACTGAAGTTAGCAGATCCTATCTCCCTGAAGTTGCAGTG
* *
66188160 AAGCAGATCAAAGTAACAATCCTTATCTCTCTGAAGTTGCAGTAGAGCAGGATAAAATTAC-CCA
66 AAGCAGAACAAAGTAACAATCCTTATCTCTCTGAAGTTGCAGTAGAGCAGGATAAAAATACACCA
* **
66188224 AGTC-TCATCTTTCTGAAGTTGCAGTGGAGCAGACTGAAGTTAGTAGATCTT
131 A-CCGT-ATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGTTAGTAGATCTT
* * *
66188275 ATCTCCCTGAAGTTGCAATGGAGCAGAAC-GAAGTTAGTAGATCCTATCTCCCTGAAGTTGCAGT
1 ATCTCCCTAAAGTTGCAATAGAGCAG-ACTGAAGTTAGCAGATCCTATCTCCCTGAAGTTGCAGT
* * * *
66188339 GGAGTAGAACGAAGTAACAATCCTTATCTCTCTGAAGTTGCAGTAGAGCAGGATAAAAATACACG
65 GAAGCAGAACAAAGTAACAATCCTTATCTCTCTGAAGTTGCAGTAGAGCAGGATAAAAATACACC
66188404 AACCGTATCTCCCTGAAGTTGCAGTGGAGCAG
130 AACCGTATCTCCCTGAAGTTGCAGTGGAGCAG
66188436 TTGCAGTAGA
Statistics
Matches: 143, Mismatches: 15, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
180 137 0.96
181 6 0.04
ACGTcount: A:0.31, C:0.20, G:0.23, T:0.26
Consensus pattern (180 bp):
ATCTCCCTAAAGTTGCAATAGAGCAGACTGAAGTTAGCAGATCCTATCTCCCTGAAGTTGCAGTG
AAGCAGAACAAAGTAACAATCCTTATCTCTCTGAAGTTGCAGTAGAGCAGGATAAAAATACACCA
ACCGTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGTTAGTAGATCTT
Found at i:66188415 original size:270 final size:270
Alignment explanation
Indices: 66187778--66188435 Score: 771
Period size: 270 Copynumber: 2.4 Consensus size: 270
66187768 CATAGCAAAT
* * * * *
66187778 CTTATCTCTCT-AACGTTGCAGTAGAGTAGGTTGAAA-TA-GCAAGTCTCATCTCCCTAAAGTTA
1 CTTATCTCCCTGAA-GTTGCAGTAGAGTAGGATAAAAGTACACAAGTCTCATCTCCCTAAAGTTG
* * * * * * * *
66187840 CAGTGGAGTAGA-TGGAAGATAGCAGATCTTGTCCCCCTGAAGTTGCAGTGGAGCAGATCAAAGC
65 CAGTAGAGCAGACT-AAAAATAGCAGACCGTATCTCCCTGAAGTTGCAGTGGAGCAGATCAAAGC
* *
66187904 CACAATCCTTATCTCTTTGAAGTTGCAGTAGAGCAGGATAAAATTACCCAAGTCTCATCTCCCTG
129 AACAATCCTTATCTCTCTGAAGTTGCAGTAGAGCAGGATAAAATTACCCAAGTCTCATCTCCCTG
* * * * *
66187969 AAGTTGCAGTGGAGCGGACTAAAGTTAGCAGATCTTATCTCCCTGGAGTTGCAGTAGAGCATATC
194 AAGTTGCAGTGGAGCAGACTAAAGTTAGCAGATCTTATCTCCCTGAAGTTGCAATAGAGCAGAAC
66188034 GAAGTAACAATC
259 GAAGTAACAATC
* * *
66188046 CTTATCTCTCTGAAGTTGCAGTAGAGTAGGATAAAATTACCCAAGTCTCATCTCCCTAAAGTTGC
1 CTTATCTCCCTGAAGTTGCAGTAGAGTAGGATAAAAGTACACAAGTCTCATCTCCCTAAAGTTGC
* ** * * * * *
66188111 AGTAGAGCAGACTGAAGTTAGCAGATCTTATCTCCCTGAAGTTGTAGTGAAGCAGATCAAAGTAA
66 AGTAGAGCAGACTAAAAATAGCAGACCGTATCTCCCTGAAGTTGCAGTGGAGCAGATCAAAGCAA
**
66188176 CAATCCTTATCTCTCTGAAGTTGCAGTAGAGCAGGATAAAATTACCCAAGTCTCATCTTTCTGAA
131 CAATCCTTATCTCTCTGAAGTTGCAGTAGAGCAGGATAAAATTACCCAAGTCTCATCTCCCTGAA
* * *
66188241 GTTGCAGTGGAGCAGACTGAAGTTAGTAGATCTTATCTCCCTGAAGTTGCAATGGAGCAGAACGA
196 GTTGCAGTGGAGCAGACTAAAGTTAGCAGATCTTATCTCCCTGAAGTTGCAATAGAGCAGAACGA
**
66188306 AGTTAGTAGATC
261 AG-TAACA-ATC
* * * * *
66188318 C-TATCTCCCTGAAGTTGCAGTGGAGTA-GA-ACGAAGTA-ACAA-TCCTTATCTCTCTGAAGTT
1 CTTATCTCCCTGAAGTTGCAGTAGAGTAGGATA-AAAGTACACAAGT-CTCATCTCCCTAAAGTT
66188378 GCAGTAGAGCAGGA-TAAAAATA-CACGAACCGTATCTCCCTGAAGTTGCAGTGGAGCAG
64 GCAGTAGAGCA-GACTAAAAATAGCA-G-ACCGTATCTCCCTGAAGTTGCAGTGGAGCAG
66188436 TTGCAGTAGA
Statistics
Matches: 338, Mismatches: 41, Indels: 20
0.85 0.10 0.05
Matches are distributed among these distances:
268 34 0.10
269 39 0.12
270 233 0.69
271 28 0.08
272 4 0.01
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.27
Consensus pattern (270 bp):
CTTATCTCCCTGAAGTTGCAGTAGAGTAGGATAAAAGTACACAAGTCTCATCTCCCTAAAGTTGC
AGTAGAGCAGACTAAAAATAGCAGACCGTATCTCCCTGAAGTTGCAGTGGAGCAGATCAAAGCAA
CAATCCTTATCTCTCTGAAGTTGCAGTAGAGCAGGATAAAATTACCCAAGTCTCATCTCCCTGAA
GTTGCAGTGGAGCAGACTAAAGTTAGCAGATCTTATCTCCCTGAAGTTGCAATAGAGCAGAACGA
AGTAACAATC
Found at i:66191223 original size:21 final size:19
Alignment explanation
Indices: 66191185--66191223 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 19
66191175 ACTCCTGGCA
*
66191185 CCATAGCCACGCCCAGCCT
1 CCATAGCCACGCACAGCCT
66191204 CCATATGCCAGCGCACAGCC
1 CCATA-GCCA-CGCACAGCC
66191224 CCCGTACACG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 5 0.29
20 4 0.24
21 8 0.47
ACGTcount: A:0.23, C:0.49, G:0.18, T:0.10
Consensus pattern (19 bp):
CCATAGCCACGCACAGCCT
Found at i:66194146 original size:39 final size:39
Alignment explanation
Indices: 66194100--66194270 Score: 166
Period size: 39 Copynumber: 4.3 Consensus size: 39
66194090 GGACTAAGAT
*
66194100 CCGAAGGCATTTGTGCGAGATACAAATTCCGAGTTAAG-C
1 CCGAAGGCATTTGTGCGAGATACAAA-TCCGGGTTAAGTC
* * *
66194139 CCGAAGGCCTTTGTGAGAGATACTAAATCCGGGTTAAGTT
1 CCGAAGGCATTTGTGCGAGATAC-AAATCCGGGTTAAGTC
* * * * *
66194179 TCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTC
1 CCGAAGGCATTTGTGCGAGATA-CAAATCCGGGTTAAGTC
* * * * *
66194219 CCGAAGGCA-TTGTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTTGTGCGAGATAC-AAATCCGGGTTAAGTC
66194258 CCGAAGGCATTTG
1 CCGAAGGCATTTG
66194271 AACGAGGAGC
Statistics
Matches: 109, Mismatches: 18, Indels: 9
0.80 0.13 0.07
Matches are distributed among these distances:
39 64 0.59
40 45 0.41
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.27
Consensus pattern (39 bp):
CCGAAGGCATTTGTGCGAGATACAAATCCGGGTTAAGTC
Found at i:66194195 original size:79 final size:79
Alignment explanation
Indices: 66194100--66194268 Score: 189
Period size: 79 Copynumber: 2.1 Consensus size: 79
66194090 GGACTAAGAT
* *
66194100 CCGAAGGCATTTGTGCGAGATA-CAAATTCCGAGTTAAG-CCCGAAGGCCTTTGTGAGAGATACT
1 CCGAAGGCATTCGTGCGAGATATCAAA-TCCGAGTTAAGTCCCGAAGG-CATTGTGAGAGATACT
* * *
66194163 AAATCCGGGTTAAGTT
64 AAAACCGGGCTAAGTC
* * * * * * *
66194179 TCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAA
1 CCGAAGGCATTCGTGCGAGATATCAAATCCGAGTTAAGTCCCGAAGGCATTGTGAGAGATACTAA
*
66194244 AACCGGGCTATGTC
66 AACCGGGCTAAGTC
66194258 CCGAAGGCATT
1 CCGAAGGCATT
66194269 TGAACGAGGA
Statistics
Matches: 74, Mismatches: 14, Indels: 4
0.80 0.15 0.04
Matches are distributed among these distances:
79 63 0.85
80 11 0.15
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.27
Consensus pattern (79 bp):
CCGAAGGCATTCGTGCGAGATATCAAATCCGAGTTAAGTCCCGAAGGCATTGTGAGAGATACTAA
AACCGGGCTAAGTC
Found at i:66194206 original size:40 final size:40
Alignment explanation
Indices: 66194047--66194270 Score: 190
Period size: 40 Copynumber: 5.7 Consensus size: 40
66194037 TTGAATGCTG
* * * *
66194047 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAA
**
66194087 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATAC-AAA
1 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAA
* * *
66194126 TTCCGAGTTAAG-CCCGAAGGCCTTTGTGAGAGATACTAAA
1 -TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAAA
** * * *
66194166 TCCGGGTTAAGTTTCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAAA
* * *
66194206 TCCGGGTTATGTCCCGAAGGCA-TTGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAAA
* * *
66194245 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTG
66194271 AACGAGGAGC
Statistics
Matches: 151, Mismatches: 25, Indels: 16
0.79 0.13 0.08
Matches are distributed among these distances:
39 67 0.44
40 73 0.48
41 10 0.07
42 1 0.01
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAAA
Found at i:66196800 original size:127 final size:126
Alignment explanation
Indices: 66196565--66196867 Score: 331
Period size: 127 Copynumber: 2.4 Consensus size: 126
66196555 GTAATAATTG
* * * **
66196565 ATGTTTGGGAACTCGAGGAATCGTGCTCTACCGTGCTGGGTTTCGATTTTCCGTTTAACCAAATA
1 ATGTTTGGAAATTCGAGGAATCGTGCCCTACCGCACTGGGTTTCGATTTTCCGTTTAACCAAATA
* * *
66196630 ATCAAATATTCCTTTGAAATTTCATCCGTACTTTCTAAGTTCTAAAACAAGTCAATGTTCA
66 ATCAAATATTCCTTTGAAATTTCATCCGTACTTTATAAATTCTAAAACAAGACAATGTTCA
* * * **
66196691 CTGTTTGGAAATTCGAGGAATCGTGCCCTATCGCACTGGGTTTTGA-TTTCCGGTTTGTTCCAAA
1 ATGTTTGGAAATTCGAGGAATCGTGCCCTACCGCACTGGGTTTCGATTTTCC-GTTT-AACCAAA
** ** * ** *
66196755 TAATTGAATATTCCTTTGGTATTTTA-CTCGTGTTTTATAAATTCTAAAGCAAGACAATGTTCA
64 TAATCAAATATTCCTTTGAAATTTCATC-CGTACTTTATAAATTCTAAAACAAGACAATGTTCA
* * ** *
66196818 ATGTTTGGAAATTCGAGGAATCATGCCATACCGTGCTGGGTTTCAATTTT
1 ATGTTTGGAAATTCGAGGAATCGTGCCCTACCGCACTGGGTTTCGATTTT
66196868 TTTGTTGGAC
Statistics
Matches: 144, Mismatches: 29, Indels: 6
0.80 0.16 0.03
Matches are distributed among these distances:
125 5 0.03
126 43 0.30
127 93 0.65
128 3 0.02
ACGTcount: A:0.26, C:0.18, G:0.19, T:0.37
Consensus pattern (126 bp):
ATGTTTGGAAATTCGAGGAATCGTGCCCTACCGCACTGGGTTTCGATTTTCCGTTTAACCAAATA
ATCAAATATTCCTTTGAAATTTCATCCGTACTTTATAAATTCTAAAACAAGACAATGTTCA
Found at i:66205751 original size:19 final size:19
Alignment explanation
Indices: 66205723--66205764 Score: 75
Period size: 19 Copynumber: 2.2 Consensus size: 19
66205713 GCGCTACTGC
66205723 AAGCTCATGAAAGCTTACT
1 AAGCTCATGAAAGCTTACT
*
66205742 AAGCTTATGAAAGCTTACT
1 AAGCTCATGAAAGCTTACT
66205761 AAGC
1 AAGC
66205765 AAGGATCATC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.38, C:0.19, G:0.17, T:0.26
Consensus pattern (19 bp):
AAGCTCATGAAAGCTTACT
Found at i:66210133 original size:28 final size:28
Alignment explanation
Indices: 66210093--66210171 Score: 104
Period size: 28 Copynumber: 2.8 Consensus size: 28
66210083 GCAATCAAAT
* * *
66210093 ATGGTACTCAGTGTACGAAATATTGAGA
1 ATGGCACTTAGTGTGCGAAATATTGAGA
*
66210121 ATGGCACTTAGTGTGCGAGATATTGAGA
1 ATGGCACTTAGTGTGCGAAATATTGAGA
* *
66210149 ATGACACTTAGTGTGCAAAATAT
1 ATGGCACTTAGTGTGCGAAATAT
66210172 CAAATGATTC
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 44 1.00
ACGTcount: A:0.34, C:0.11, G:0.25, T:0.29
Consensus pattern (28 bp):
ATGGCACTTAGTGTGCGAAATATTGAGA
Found at i:66210384 original size:43 final size:42
Alignment explanation
Indices: 66210331--66210411 Score: 117
Period size: 43 Copynumber: 1.9 Consensus size: 42
66210321 TGAATAATAT
**
66210331 TATCGGGCTTCGGGCCTAGCAGGCTAAAATGCCAGTGAAATGA
1 TATCGGGCTTCAAGCCTAGCAGGC-AAAATGCCAGTGAAATGA
* *
66210374 TATCGGGCTTCAAGCCTAGCAGGCGAAATGCCGGTGAA
1 TATCGGGCTTCAAGCCTAGCAGGCAAAATGCCAGTGAA
66210412 TGAGTTCAGA
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
42 12 0.35
43 22 0.65
ACGTcount: A:0.27, C:0.22, G:0.31, T:0.20
Consensus pattern (42 bp):
TATCGGGCTTCAAGCCTAGCAGGCAAAATGCCAGTGAAATGA
Found at i:66210487 original size:40 final size:40
Alignment explanation
Indices: 66210344--66210492 Score: 120
Period size: 40 Copynumber: 3.6 Consensus size: 40
66210334 CGGGCTTCGG
* *
66210344 GCCTAGCAGGCTAAAATGCCAGTGA-AATGATATCGGGCTTCAA
1 GCCTAGCAGGCT-AAATGCCGGTGATAA--AT-TCGGGCTTAAA
* * * * *
66210387 GCCTAGCAGGCGAAATGCCGGTGAATGAGTTCAGACTTAAA
1 GCCTAGCAGGCTAAATGCCGGTG-ATAAATTCGGGCTTAAA
* *** *
66210428 GTCTAGCAGGCTTCGTGCCGGTGATAAATTCGGGTTTAAA
1 GCCTAGCAGGCTAAATGCCGGTGATAAATTCGGGCTTAAA
* *
66210468 ACCTAGCAGGCTAAATGCCGATGAT
1 GCCTAGCAGGCTAAATGCCGGTGAT
66210493 TTGATAAAAG
Statistics
Matches: 81, Mismatches: 23, Indels: 7
0.73 0.21 0.06
Matches are distributed among these distances:
40 31 0.38
41 26 0.32
42 11 0.14
43 12 0.15
44 1 0.01
ACGTcount: A:0.30, C:0.20, G:0.28, T:0.23
Consensus pattern (40 bp):
GCCTAGCAGGCTAAATGCCGGTGATAAATTCGGGCTTAAA
Found at i:66217016 original size:28 final size:28
Alignment explanation
Indices: 66216955--66217016 Score: 88
Period size: 28 Copynumber: 2.2 Consensus size: 28
66216945 TATGGTACTC
* * *
66216955 AGTGTATGAAATATTGAGAATGATACTT
1 AGTGTGTGAAATATTCAGAATGACACTT
*
66216983 AGTGTGTGAGATATTCAGAATGACACTT
1 AGTGTGTGAAATATTCAGAATGACACTT
66217011 AGTGTG
1 AGTGTG
66217017 CAAAATATCA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.34, C:0.06, G:0.26, T:0.34
Consensus pattern (28 bp):
AGTGTGTGAAATATTCAGAATGACACTT
Found at i:66217030 original size:26 final size:28
Alignment explanation
Indices: 66216963--66217031 Score: 79
Period size: 28 Copynumber: 2.5 Consensus size: 28
66216953 TCAGTGTATG
* * **
66216963 AAATATTGAGAATGATACTTAGTGTGTG
1 AAATATTCAGAATGACACTTAGTGTGCA
*
66216991 AGATATTCAGAATGACACTTAGTGTGCA
1 AAATATTCAGAATGACACTTAGTGTGCA
66217019 AAATA-TCA-AATGA
1 AAATATTCAGAATGA
66217032 TTCAAAGGGA
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
26 5 0.14
27 3 0.09
28 27 0.77
ACGTcount: A:0.41, C:0.09, G:0.20, T:0.30
Consensus pattern (28 bp):
AAATATTCAGAATGACACTTAGTGTGCA
Found at i:66221420 original size:66 final size:66
Alignment explanation
Indices: 66221313--66221452 Score: 208
Period size: 66 Copynumber: 2.1 Consensus size: 66
66221303 TCACCCTAGG
*
66221313 ACATGCCCGTGTTGGAGGCCGTGTTTGACCCTGTGTAACTCTCTGACTTGCACACACGGCCATGC
1 ACATGCCCGTGTTGGAGGCCGTGTTTGACCCTGCGTAACTCTCTGACTTGCACACACGGCCATGC
66221378 C
66 C
* * * * **
66221379 ACATGCCTGTGTTGGAGGCCGTGTTTGACCGTGCGTTACTCTCTGACTTGCGCACACGGTTATGC
1 ACATGCCCGTGTTGGAGGCCGTGTTTGACCCTGCGTAACTCTCTGACTTGCACACACGGCCATGC
66221444 C
66 C
*
66221445 ACACGCCC
1 ACATGCCC
66221453 ATGTGCTAGG
Statistics
Matches: 65, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
66 65 1.00
ACGTcount: A:0.16, C:0.31, G:0.26, T:0.26
Consensus pattern (66 bp):
ACATGCCCGTGTTGGAGGCCGTGTTTGACCCTGCGTAACTCTCTGACTTGCACACACGGCCATGC
C
Found at i:66228598 original size:21 final size:22
Alignment explanation
Indices: 66228553--66228598 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
66228543 TACAGCGTTC
*
66228553 ACACGCCCGTATGATCCAAGGG
1 ACACACCCGTATGATCCAAGGG
* *
66228575 ACACACCCGTGTGA-CCATGGG
1 ACACACCCGTATGATCCAAGGG
66228596 ACA
1 ACA
66228599 TGCCTGTGTT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
21 9 0.43
22 12 0.57
ACGTcount: A:0.28, C:0.33, G:0.26, T:0.13
Consensus pattern (22 bp):
ACACACCCGTATGATCCAAGGG
Found at i:66231118 original size:40 final size:40
Alignment explanation
Indices: 66231054--66231129 Score: 100
Period size: 40 Copynumber: 1.9 Consensus size: 40
66231044 ACTATGTTCG
* **
66231054 GCACTAAGTGTGCGATTTGAAATAGCTTCA-GCTATAAATA
1 GCACTAAGTGTGCAAAATGAAATAGCTT-AGGCTATAAATA
*
66231094 GCACTAAGTGTGCAAAATGGAATAGCTTAGGCTATA
1 GCACTAAGTGTGCAAAATGAAATAGCTTAGGCTATA
66231130 TGAGGCACTA
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
39 1 0.03
40 30 0.97
ACGTcount: A:0.36, C:0.14, G:0.22, T:0.28
Consensus pattern (40 bp):
GCACTAAGTGTGCAAAATGAAATAGCTTAGGCTATAAATA
Found at i:66235363 original size:47 final size:47
Alignment explanation
Indices: 66235305--66235934 Score: 1098
Period size: 47 Copynumber: 13.4 Consensus size: 47
66235295 CAGCCAATAC
66235305 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
66235352 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
66235399 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
66235446 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
66235493 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
66235540 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAG
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
66235587 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
66235634 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAG
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
66235681 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
66235728 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
66235775 AGTGTATATATGTAATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
66235822 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * * * * * *
66235869 AGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
66235916 AGTGCATAAATGTGATAAG
1 AGTGTATATATGTGATAAG
66235935 TCTCGAAGGG
Statistics
Matches: 558, Mismatches: 25, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 558 1.00
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
Found at i:66236109 original size:37 final size:37
Alignment explanation
Indices: 66236053--66236131 Score: 106
Period size: 37 Copynumber: 2.1 Consensus size: 37
66236043 CCGAGCTCTA
* *
66236053 AAGACCCGATGACTACGTGTGG-GAATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
* *
66236090 AAGACCTGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
66236127 AAGAC
1 AAGAC
66236132 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
37 36 0.97
38 1 0.03
ACGTcount: A:0.25, C:0.18, G:0.30, T:0.27
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:66237567 original size:34 final size:34
Alignment explanation
Indices: 66237523--66237597 Score: 123
Period size: 34 Copynumber: 2.2 Consensus size: 34
66237513 ACCGTAGTGT
*
66237523 AAACCACTACTAGAGAATGAGAGCAATCGATTTAA
1 AAACC-CTACTAGAGAATGAGAACAATCGATTTAA
*
66237558 AAACCCTACTAGAGAATGAGAACAATCGATTTGA
1 AAACCCTACTAGAGAATGAGAACAATCGATTTAA
66237592 AAACCC
1 AAACCC
66237598 CCAAAGGATA
Statistics
Matches: 38, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
34 33 0.87
35 5 0.13
ACGTcount: A:0.45, C:0.20, G:0.16, T:0.19
Consensus pattern (34 bp):
AAACCCTACTAGAGAATGAGAACAATCGATTTAA
Found at i:66261196 original size:49 final size:47
Alignment explanation
Indices: 66261058--66261229 Score: 132
Period size: 49 Copynumber: 3.6 Consensus size: 47
66261048 TGAGGTGTGC
* * * * *
66261058 CAGTGTAAGACCTATCTGGGACATGGCATCGAAATAGATAAATGAGAG
1 CAGTGTAAGACCTGTCTAGAACATGGCATCGACATAGAT-GATGAGAG
* * * * * * *
66261106 CTAGTGTAAGAGCTGTCTGGGACATGGCA-CTGTCCTCGATGTATGAAAG
1 C-AGTGTAAGACCTGTCTAGAACATGGCATC-GACATAGATG-ATGAGAG
*
66261155 TCAGTGTAAGACCTGTCTAGAACATGGCATCGACTTAGATG-TGAGAG
1 -CAGTGTAAGACCTGTCTAGAACATGGCATCGACATAGATGATGAGAG
* *
66261202 CCAGTGTAAGACCATGTTTAGAATATGG
1 -CAGTGTAAGACC-TGTCTAGAACATGG
66261230 AATCAGCGTC
Statistics
Matches: 100, Mismatches: 18, Indels: 12
0.77 0.14 0.09
Matches are distributed among these distances:
47 17 0.17
48 14 0.14
49 67 0.67
50 2 0.02
ACGTcount: A:0.31, C:0.16, G:0.28, T:0.25
Consensus pattern (47 bp):
CAGTGTAAGACCTGTCTAGAACATGGCATCGACATAGATGATGAGAG
Found at i:66268135 original size:33 final size:33
Alignment explanation
Indices: 66268093--66268159 Score: 125
Period size: 33 Copynumber: 2.0 Consensus size: 33
66268083 TTAGGGACAT
*
66268093 GGTTTGATCATGGATAAGTAGGTTGTGGGTTTA
1 GGTTTGATCATGGATAAGTAGGTTGTAGGTTTA
66268126 GGTTTGATCATGGATAAGTAGGTTGTAGGTTTA
1 GGTTTGATCATGGATAAGTAGGTTGTAGGTTTA
66268159 G
1 G
66268160 TGATTATGGT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.22, C:0.03, G:0.36, T:0.39
Consensus pattern (33 bp):
GGTTTGATCATGGATAAGTAGGTTGTAGGTTTA
Found at i:66272689 original size:11 final size:11
Alignment explanation
Indices: 66272670--66272699 Score: 51
Period size: 11 Copynumber: 2.6 Consensus size: 11
66272660 GTAATGGAGT
66272670 AAAATTGGAATG
1 AAAA-TGGAATG
66272682 AAAATGGAATG
1 AAAATGGAATG
66272693 AAAATGG
1 AAAATGG
66272700 TATTAAGCAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 14 0.78
12 4 0.22
ACGTcount: A:0.53, C:0.00, G:0.27, T:0.20
Consensus pattern (11 bp):
AAAATGGAATG
Found at i:66277591 original size:46 final size:46
Alignment explanation
Indices: 66277541--66277716 Score: 189
Period size: 46 Copynumber: 3.8 Consensus size: 46
66277531 TGGTTGAGCA
*
66277541 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
66277587 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* * *
66277632 CATCCAAACTGGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
66277680 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
66277717 GCGGGTTACA
Statistics
Matches: 106, Mismatches: 15, Indels: 18
0.76 0.11 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 60 0.57
47 27 0.25
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:66284459 original size:46 final size:46
Alignment explanation
Indices: 66284409--66284584 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
66284399 TGGTTGAGCA
*
66284409 TCCGAACTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
66284455 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
66284500 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
66284548 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
66284585 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 62 0.56
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:66284565 original size:93 final size:93
Alignment explanation
Indices: 66284406--66284577 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
66284396 GGATGGTTGA
* * *
66284406 GCATCCGAACTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
66284471 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
66284499 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
66284564 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
66284578 CTTATGGGCG
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:66293570 original size:47 final size:47
Alignment explanation
Indices: 66293429--66293977 Score: 882
Period size: 47 Copynumber: 11.7 Consensus size: 47
66293419 TTAGGATTCT
66293429 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
66293478 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
* *
66293527 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGTCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
*
66293574 ATGTGATGAACGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
66293621 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
66293668 ATGTGATGAA--T----GTG-A-A-ATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
66293706 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
66293753 ATGTGATGAATGTGAAAGTGTATATTTATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATA--TATGTGATAAGGCCTAATGGCCG
66293802 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
66293849 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * * * *
66293896 ATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * *
66293943 ACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
66293978 TCCCGAAGGG
Statistics
Matches: 473, Mismatches: 16, Indels: 24
0.92 0.03 0.05
Matches are distributed among these distances:
38 32 0.07
39 1 0.00
40 2 0.00
41 3 0.01
44 3 0.01
45 2 0.00
46 1 0.00
47 313 0.66
49 116 0.25
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:66293853 original size:228 final size:227
Alignment explanation
Indices: 66293456--66293912 Score: 853
Period size: 228 Copynumber: 2.0 Consensus size: 227
66293446 GTGTATATAT
66293456 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAA
1 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-ATATATATGTGATAAGGCCTAA
*
66293521 TGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGTCGATGTGATGAACG
65 TGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATGAACG
66293586 TGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTG
130 TGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTG
66293651 ATAAGGCCTAATGGCCGATGTGATGAATGTGAA
195 ATAAGGCCTAATGGCCGATGTGATGAATGTGAA
66293684 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-TATATATGTGATAAGGCCTAAT
1 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGATATATATGTGATAAGGCCTAAT
* *
66293748 GGCCGATGTGATGAATGTGAAAGTGTATATTTATGTGATAAGGCCTAATGGCCGATGTGATGAAT
66 GGCCGATGTGATGAATGTGAAAGTGTATA--TATGTGATAAGGCCGAATGGCCGATGTGATGAAC
66293813 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGT
129 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGT
66293878 GATAAGGCCTAATGGCCGATGTGATGAATGTGAA
194 GATAAGGCCTAATGGCCGATGTGATGAATGTGAA
66293912 A
1 A
66293913 GTGTATATAT
Statistics
Matches: 224, Mismatches: 3, Indels: 4
0.97 0.01 0.02
Matches are distributed among these distances:
226 51 0.23
228 173 0.77
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (227 bp):
ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGATATATATGTGATAAGGCCTAAT
GGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATGAACGT
GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
TAAGGCCTAATGGCCGATGTGATGAATGTGAA
Found at i:66293958 original size:275 final size:276
Alignment explanation
Indices: 66293429--66293967 Score: 947
Period size: 275 Copynumber: 2.0 Consensus size: 276
66293419 TTAGGATTCT
66293429 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 ATGTGATGAATGTGAAAGTG-ATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
66293494 AGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAT
65 AGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAT
*
66293559 AAGGCCGAATGGTCGATGTGATGAACGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATG
130 AAGGCCGAATGGCCGATGTGATGAACGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATG
* * * *
66293624 TGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA-TGT
195 TGATGAATGTGAAAGTGTATATATGTGACAAGGCCGAATGGCCAACGTGATGAATGTGAAAGTGT
66293688 GATAAGGCCTAATGGCCG
260 -ATAAGGCCTAATGGCCG
66293706 ATGTGATGAATGTGAAAGTG-TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 ATGTGATGAATGTGAAAGTGATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
*
66293770 GTGTATATTTATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATA
66 GTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATA
* *
66293835 AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGT
131 AGGCCGAATGGCCGATGTGATGAACGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGT
* * *
66293900 GATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTA
196 GATGAATGTGAAAGTGTATATATGTGACAAGGCCGAATGGCCAACGTGATGAATGTGAAAGTGTA
66293965 TAA
261 TAA
66293968 ATGTGATAAG
Statistics
Matches: 250, Mismatches: 11, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
275 227 0.91
276 3 0.01
277 20 0.08
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (276 bp):
ATGTGATGAATGTGAAAGTGATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
GTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATA
AGGCCGAATGGCCGATGTGATGAACGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGT
GATGAATGTGAAAGTGTATATATGTGACAAGGCCGAATGGCCAACGTGATGAATGTGAAAGTGTA
TAAGGCCTAATGGCCG
Found at i:66294164 original size:36 final size:37
Alignment explanation
Indices: 66294096--66294210 Score: 178
Period size: 37 Copynumber: 3.1 Consensus size: 37
66294086 CCGAGCTCTA
*
66294096 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATGACTACGTGTAGGGATTTTGTCCGGGT
66294133 AAGACCCGATGACTACGTGT-GGGATTTTGTCCGGGT
1 AAGACCCGATGACTACGTGTAGGGATTTTGTCCGGGT
* * * *
66294169 AAGACCCGATAACTTCGTGTAGAGATTATGTCCGGGT
1 AAGACCCGATGACTACGTGTAGGGATTTTGTCCGGGT
66294206 AAGAC
1 AAGAC
66294211 TTCGTAATAA
Statistics
Matches: 73, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
36 34 0.47
37 39 0.53
ACGTcount: A:0.23, C:0.19, G:0.31, T:0.26
Consensus pattern (37 bp):
AAGACCCGATGACTACGTGTAGGGATTTTGTCCGGGT
Found at i:66296148 original size:40 final size:39
Alignment explanation
Indices: 66296103--66296187 Score: 107
Period size: 39 Copynumber: 2.2 Consensus size: 39
66296093 AAGTGACCAT
* *
66296103 ATCCGGACTAAGATCCAAAGGCATTTGTGCGAGATACTAA
1 ATCCGGACTAAG-CCCAAAGGCATTGGTGCGAGATACTAA
* * * *
66296143 TTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 ATCCGGACTAAGCCCAAAGGCATTGGTGCGAGATACTAA
66296182 ATCCGG
1 ATCCGG
66296188 GTTAAGTCCC
Statistics
Matches: 38, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
39 28 0.74
40 10 0.26
ACGTcount: A:0.28, C:0.22, G:0.27, T:0.22
Consensus pattern (39 bp):
ATCCGGACTAAGCCCAAAGGCATTGGTGCGAGATACTAA
Found at i:66296172 original size:39 final size:40
Alignment explanation
Indices: 66296064--66296207 Score: 134
Period size: 40 Copynumber: 3.6 Consensus size: 40
66296054 TCGAATGATG
* * * *
66296064 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCGAGA-T-ACTAAA
* * * *
66296104 TCCGGACTAAGAT-CCAAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTGGTGCGAGATACTAAA
*
66296144 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCGAGATACTAAA
*
66296183 TCCGGGTTAAGTCCCGAAGAGCATT
1 TCCGGGCTAAGTCCCGAAG-GCATT
66296208 CATGCTAGTG
Statistics
Matches: 86, Mismatches: 12, Indels: 11
0.79 0.11 0.10
Matches are distributed among these distances:
39 33 0.38
40 37 0.43
41 15 0.17
42 1 0.01
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCGAGATACTAAA
Found at i:66296226 original size:40 final size:40
Alignment explanation
Indices: 66296182--66296498 Score: 454
Period size: 40 Copynumber: 7.9 Consensus size: 40
66296172 GAGTTACTAA
*
66296182 ATCCGGGTTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
*
66296222 ATCCGGGCTAAGTTCCGAAGAGCATTCATGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
* *
66296262 ATCCGGGTTAAGTCCCGAAGAGCATTCGTGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
* *
66296302 ATCCGGGCTAAGTTCCGAAGAGCATTCATGCTAGTGATAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
*
66296342 ATCCGGGCTAAGTTCCGAAGAGCATTCATGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
* * *
66296382 ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
* ** * * * *
66296422 ATCCGTGCTAAACCCCGAAGAGCATTCGTGCTGGTGTTAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
* * *
66296462 ATCCGGGCTAGGTCCCGAAGAGCAATCATGCTGGTGA
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA
66296499 CGTGTATTCG
Statistics
Matches: 252, Mismatches: 25, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 252 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
Found at i:66296320 original size:120 final size:120
Alignment explanation
Indices: 66296144--66296498 Score: 507
Period size: 120 Copynumber: 3.0 Consensus size: 120
66296134 AGATACTAAT
* * * * *
66296144 TCCGGGCTAAG-CCCGAAG-GCATTGGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGAGCAT
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGA-TATATCCGGGCTAAGTCCCGAAGAGCAT
*
66296207 TCATGCTAGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCATGCTAGTGATGTA
65 TCATGCTAGTGATATATCCGGGCTAAGTTCCGAAGAGCATTCATGCTAGTGATGTA
* * *
66296263 TCCGGGTTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTTCCGAAGAGCATT
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCATT
66296328 CATGCTAGTGATATATCCGGGCTAAGTTCCGAAGAGCATTCATGCTAGTGATGTA
66 CATGCTAGTGATATATCCGGGCTAAGTTCCGAAGAGCATTCATGCTAGTGATGTA
* * **
66296383 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCGTGCTAAACCCCGAAGAGCATT
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCATT
* * * * * * *
66296448 CGTGCTGGTGTTATATCCGGGCTAGGTCCCGAAGAGCAATCATGCTGGTGA
66 CATGCTAGTGATATATCCGGGCTAAGTTCCGAAGAGCATTCATGCTAGTGA
66296499 CGTGTATTCG
Statistics
Matches: 211, Mismatches: 23, Indels: 3
0.89 0.10 0.01
Matches are distributed among these distances:
119 10 0.05
120 188 0.89
121 13 0.06
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (120 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCATT
CATGCTAGTGATATATCCGGGCTAAGTTCCGAAGAGCATTCATGCTAGTGATGTA
Found at i:66300163 original size:47 final size:47
Alignment explanation
Indices: 66300022--66300514 Score: 689
Period size: 47 Copynumber: 10.7 Consensus size: 47
66300012 TTAGGATTCT
66300022 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
66300071 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
* * *
66300120 ATGTGATGAACGTGAAACTGTATATATGTGATAAGGCCGAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
*
66300167 ATGTGATGAACGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
66300214 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
66300261 ATGTGATGAA--T----GTG--TA-ATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
66300299 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
*
66300348 ATGTGATGAATGTGAAAATGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
66300395 ATGTGATGAATGTGAAA--G------TG-GATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * * * *
66300433 ATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * *
66300480 ACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
66300515 TCCCGAAGGG
Statistics
Matches: 407, Mismatches: 17, Indels: 42
0.87 0.04 0.09
Matches are distributed among these distances:
38 67 0.16
39 4 0.01
40 2 0.00
41 3 0.01
44 3 0.01
45 2 0.00
46 2 0.00
47 214 0.53
48 2 0.00
49 108 0.27
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.28
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:66300281 original size:38 final size:40
Alignment explanation
Indices: 66300226--66300447 Score: 238
Period size: 38 Copynumber: 5.2 Consensus size: 40
66300216 GTGATGAATG
*
66300226 TGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGA
1 TGAATGTG-ATATATGTGATAAGGCCTAATGGCCGATGTGA
66300267 TGAATGTG-TA-ATGTGATAAGGCCTAATGGCCGATGTGA
1 TGAATGTGATATATGTGATAAGGCCTAATGGCCGATGTGA
66300305 TGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGA
1 TGAA--T----GTG---ATATATGTGATAAGGCCTAATGGCCGATGTGA
66300354 TGAATGTGAAAATGTATATATGTGATAAGGCCTAATGGCCGATGTGA
1 TGAA--TG----TG-ATATATGTGATAAGGCCTAATGGCCGATGTGA
66300401 TGAATGTGA-A-A-GTGGATAAGGCCTAATGGCCGATGTGA
1 TGAATGTGATATATGT-GATAAGGCCTAATGGCCGATGTGA
66300439 TGAATGTGA
1 TGAATGTGA
66300448 AAGTGTATAT
Statistics
Matches: 164, Mismatches: 1, Indels: 35
0.82 0.00 0.17
Matches are distributed among these distances:
37 2 0.01
38 66 0.40
39 3 0.02
40 2 0.01
41 9 0.05
44 3 0.02
45 3 0.02
47 37 0.23
48 2 0.01
49 37 0.23
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (40 bp):
TGAATGTGATATATGTGATAAGGCCTAATGGCCGATGTGA
Found at i:66300370 original size:134 final size:132
Alignment explanation
Indices: 66300022--66300514 Score: 727
Period size: 134 Copynumber: 3.6 Consensus size: 132
66300012 TTAGGATTCT
66300022 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
66300087 AGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAACGTGAAACTGTATATATGTGAT
64 AGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAA--TG----TG--TA-ATGTGAT
*
66300152 AAGGCCGAATGGCCG
118 AAGGCCTAATGGCCG
*
66300167 ATGTGATGAACGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
66300232 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGTAATGTGATAAGGCCTAATGGC
66 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGTAATGTGATAAGGCCTAATGGC
66300297 CG
131 CG
66300299 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
66300364 AATGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG-AAAGTGGATAAGGCCTAAT
64 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGTAATGT-GATAAGGCCTAAT
66300428 GGCCG
128 GGCCG
* * * * * * *
66300433 ATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
*
66300498 TGTATAAATGTGATAAG
66 TGTATATATGTGATAAG
66300515 TCCCGAAGGG
Statistics
Matches: 331, Mismatches: 14, Indels: 19
0.91 0.04 0.05
Matches are distributed among these distances:
132 93 0.28
133 6 0.02
134 125 0.38
135 2 0.01
139 2 0.01
141 37 0.11
143 47 0.14
145 19 0.06
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.28
Consensus pattern (132 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGTAATGTGATAAGGCCTAATGGC
CG
Found at i:66300372 original size:181 final size:170
Alignment explanation
Indices: 66300098--66300446 Score: 554
Period size: 181 Copynumber: 2.0 Consensus size: 170
66300088 GTGTATATAT
66300098 ATGTGATAAGGCCTAATGGCCGATGTGATGAACGTGAAACTGTATATATGTGATAAGGCCGAATG
1 ATGTGATAAGGCCTAATGGCCGATGTGATGAACGTGAAACTGTATATATGTGATAAGGCCGAATG
*
66300163 GCCGATGTGATGAACGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
66 GCCGATGTGATGAACGTGAAAATGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
66300228 AAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGTA
131 AAA--G------TG-GATAAGGCCTAATGGCCGATGTGATGAATGTGTA
* * *
66300277 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAA
1 ATGTGATAAGGCCTAATGGCCGATGTGATGAACGTGAAACTG--TATATATGTGATAAGGCCGAA
*
66300342 TGGCCGATGTGATGAATGTGAAAATGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
64 TGGCCGATGTGATGAACGTGAAAATGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
66300407 TGAAAGTGGATAAGGCCTAATGGCCGATGTGATGAATGTG
129 TGAAAGTGGATAAGGCCTAATGGCCGATGTGATGAATGTG
66300447 AAAGTGTATA
Statistics
Matches: 163, Mismatches: 5, Indels: 11
0.91 0.03 0.06
Matches are distributed among these distances:
172 32 0.20
173 2 0.01
179 41 0.25
181 88 0.54
ACGTcount: A:0.32, C:0.10, G:0.30, T:0.28
Consensus pattern (170 bp):
ATGTGATAAGGCCTAATGGCCGATGTGATGAACGTGAAACTGTATATATGTGATAAGGCCGAATG
GCCGATGTGATGAACGTGAAAATGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
AAAGTGGATAAGGCCTAATGGCCGATGTGATGAATGTGTA
Found at i:66300460 original size:85 final size:85
Alignment explanation
Indices: 66300330--66300504 Score: 269
Period size: 85 Copynumber: 2.1 Consensus size: 85
66300320 ATATATATGT
* * *
66300330 GATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATATATGTGATAAGGCCTAATGGCCG
1 GATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATATATGTGACAAGGCCGAATGGCCA
*
66300395 ATGTGATGAATGTGAAAGTG
66 ACGTGATGAATGTGAAAGTG
* * *
66300415 GATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCA
1 GATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATATATGTGACAAGGCCGAATGGCCA
*
66300480 ACGTGATGGATGTGAAAGTG
66 ACGTGATGAATGTGAAAGTG
*
66300500 TATAA
1 GATAA
66300505 ATGTGATAAG
Statistics
Matches: 81, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
85 81 1.00
ACGTcount: A:0.32, C:0.10, G:0.32, T:0.26
Consensus pattern (85 bp):
GATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATATATGTGACAAGGCCGAATGGCCA
ACGTGATGAATGTGAAAGTG
Found at i:66300510 original size:228 final size:230
Alignment explanation
Indices: 66300024--66300514 Score: 725
Period size: 228 Copynumber: 2.1 Consensus size: 230
66300014 AGGATTCTAT
*
66300024 GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
1 GTGATGGATGTGAAAGTGTATA-A-ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
*
66300089 TGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAACGTGAAACTGTATATATGTGATAA
64 TGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAACGTGAAAATGTATATATGTGATAA
66300154 GGCCGAATGGCCGATGTGATGAACGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
129 GGCCGAATGGCCGATGTGATGAACGTGAAAG-G-----ATGTGATAAGGCCTAATGGCCGATGTG
* * *
66300219 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGA
188 ATGAATGTGAAAGTGTATATATGTGACAAGGCCGAATGGCCAA
*
66300262 -TG-T-GA--TG-AA-TGTGT-AATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 GTGATGGATGTGAAAGTGTATAAATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
66300319 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATATATGTGATAAGG
66 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAACGTGAAAATGTATATATGTGATAAGG
* *
66300384 CCTAATGGCCGATGTGATGAATGTGAAA-G-TG-GATAAGGCCTAATGGCCGATGTGATGAATGT
131 CCGAATGGCCGATGTGATGAACGTGAAAGGATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
* *
66300446 GAAAGTGTATATATGTGACAGGGCCGAGTGGCCAA
196 GAAAGTGTATATATGTGACAAGGCCGAATGGCCAA
66300481 CGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 -GTGATGGATGTGAAAGTGTATAAATGTGATAAG
66300515 TCCCGAAGGG
Statistics
Matches: 232, Mismatches: 12, Indels: 28
0.85 0.04 0.10
Matches are distributed among these distances:
219 61 0.26
220 2 0.01
221 2 0.01
222 1 0.00
223 2 0.01
225 2 0.01
226 3 0.01
227 4 0.02
228 142 0.61
229 1 0.00
231 4 0.02
232 2 0.01
233 2 0.01
235 1 0.00
236 1 0.00
237 2 0.01
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.28
Consensus pattern (230 bp):
GTGATGGATGTGAAAGTGTATAAATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAACGTGAAAATGTATATATGTGATAAGG
CCGAATGGCCGATGTGATGAACGTGAAAGGATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
GAAAGTGTATATATGTGACAAGGCCGAATGGCCAA
Found at i:66300687 original size:37 final size:37
Alignment explanation
Indices: 66300633--66300748 Score: 187
Period size: 37 Copynumber: 3.1 Consensus size: 37
66300623 CCGAGCTCTA
66300633 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
*
66300670 AAGGCCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
* * * *
66300707 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
66300744 AAGAC
1 AAGAC
66300749 TTCGTAATAA
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 73 1.00
ACGTcount: A:0.22, C:0.19, G:0.34, T:0.26
Consensus pattern (37 bp):
AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
Found at i:66302218 original size:40 final size:40
Alignment explanation
Indices: 66302174--66302348 Score: 305
Period size: 40 Copynumber: 4.4 Consensus size: 40
66302164 TGTTACAATA
66302174 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
1 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
* *
66302214 GCATTCGTGCAGGTTATTATAACCGGGTTAAGCCCCGAAG
1 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
* *
66302254 GTATTCGTGCGGGTTATTATAATCGGGTTAAGTCCCGAAG
1 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
66302294 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
1 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
*
66302334 GCATTCGTGCTGGTT
1 GCATTCGTGCGGGTT
66302349 GTTTCATCCG
Statistics
Matches: 126, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 126 1.00
ACGTcount: A:0.22, C:0.19, G:0.30, T:0.29
Consensus pattern (40 bp):
GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
Found at i:66302372 original size:80 final size:80
Alignment explanation
Indices: 66302174--66302372 Score: 238
Period size: 80 Copynumber: 2.5 Consensus size: 80
66302164 TGTTACAATA
* * ** *
66302174 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAGGCATTCGTGCAGGTTATTATAACCG
1 GCATTCGTGCGGGTTATTATAATCGAGCCAAATCCCGAAGGCATTCGTGCAGGTTATTATAACCG
66302239 GGTTAAGCCCCGAAG
66 GGTTAAGCCCCGAAG
* * ** * *
66302254 GTATTCGTGCGGGTTATTATAATCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTATTATAACCG
1 GCATTCGTGCGGGTTATTATAATCGAGCCAAATCCCGAAGGCATTCGTGCAGGTTATTATAACCG
*
66302319 GGTTAAGTCCCGAAG
66 GGTTAAGCCCCGAAG
* * * *
66302334 GCATTCGTGCTGGTTGTT-TCATCCGAGCCAAATTCCGAA
1 GCATTCGTGCGGGTTATTATAAT-CGAGCCAAATCCCGAA
66302373 AGTATTTATG
Statistics
Matches: 105, Mismatches: 13, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
79 3 0.03
80 102 0.97
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.29
Consensus pattern (80 bp):
GCATTCGTGCGGGTTATTATAATCGAGCCAAATCCCGAAGGCATTCGTGCAGGTTATTATAACCG
GGTTAAGCCCCGAAG
Found at i:66307692 original size:28 final size:28
Alignment explanation
Indices: 66307652--66307749 Score: 87
Period size: 28 Copynumber: 3.5 Consensus size: 28
66307642 AATAATTTCG
*
66307652 CACACACACAGTGCCTTACACCCGATCT
1 CACACACATAGTGCCTTACACCCGATCT
** *
66307680 CACACACATAGTGCTCGGTTA-A--TAATTT
1 CACACACATAGTGC-C--TTACACCCGATCT
*
66307708 CGCACACATAGTGCCTTACACCCGATCT
1 CACACACATAGTGCCTTACACCCGATCT
66307736 -AGCACACATAGTGC
1 CA-CACACATAGTGC
66307750 TCGGTTAATA
Statistics
Matches: 54, Mismatches: 9, Indels: 14
0.70 0.12 0.18
Matches are distributed among these distances:
25 3 0.06
26 1 0.02
27 1 0.02
28 44 0.81
29 1 0.02
30 1 0.02
31 3 0.06
ACGTcount: A:0.30, C:0.34, G:0.14, T:0.22
Consensus pattern (28 bp):
CACACACATAGTGCCTTACACCCGATCT
Found at i:66307730 original size:56 final size:56
Alignment explanation
Indices: 66307642--66307777 Score: 229
Period size: 56 Copynumber: 2.4 Consensus size: 56
66307632 ATATTCCCTA
*
66307642 AATAATTTCGCACACACACAGTGCCTTACACCCGATCTCA-CACACATAGTGCTCGGTT
1 AATAATTTCG--CACACATAGTGCCTTACACCCGATCT-AGCACACATAGTGCTCGGTT
66307700 AATAATTTCGCACACATAGTGCCTTACACCCGATCTAGCACACATAGTGCTCGGTT
1 AATAATTTCGCACACATAGTGCCTTACACCCGATCTAGCACACATAGTGCTCGGTT
66307756 AATAATTTCGCACACATAGTGC
1 AATAATTTCGCACACATAGTGC
66307778 ATATATTTAT
Statistics
Matches: 76, Mismatches: 1, Indels: 4
0.94 0.01 0.05
Matches are distributed among these distances:
55 1 0.01
56 65 0.86
58 10 0.13
ACGTcount: A:0.30, C:0.29, G:0.15, T:0.26
Consensus pattern (56 bp):
AATAATTTCGCACACATAGTGCCTTACACCCGATCTAGCACACATAGTGCTCGGTT
Found at i:66307768 original size:28 final size:28
Alignment explanation
Indices: 66307682--66307777 Score: 108
Period size: 28 Copynumber: 3.4 Consensus size: 28
66307672 CCCGATCTCA
66307682 CACACATAGTGCTCGGTTAATAATTTCG
1 CACACATAGTGCTCGGTTAATAATTTCG
** * *
66307710 CACACATAGTGC-C--TTACACCCGATCTAG
1 CACACATAGTGCTCGGTTA-A--TAATTTCG
66307738 CACACATAGTGCTCGGTTAATAATTTCG
1 CACACATAGTGCTCGGTTAATAATTTCG
66307766 CACACATAGTGC
1 CACACATAGTGC
66307778 ATATATTTAT
Statistics
Matches: 54, Mismatches: 8, Indels: 12
0.73 0.11 0.16
Matches are distributed among these distances:
25 3 0.06
26 1 0.02
27 1 0.02
28 44 0.81
29 1 0.02
30 1 0.02
31 3 0.06
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (28 bp):
CACACATAGTGCTCGGTTAATAATTTCG
Found at i:66324371 original size:30 final size:29
Alignment explanation
Indices: 66324335--66324400 Score: 75
Period size: 28 Copynumber: 2.3 Consensus size: 29
66324325 AGTGAATGAT
*
66324335 ATTATATATATTAGATTATATTAAAAATAA
1 ATTATATATAGTAGA-TATATTAAAAATAA
* *
66324365 A-T-TATATAGTAGATATATTTATAATAA
1 ATTATATATAGTAGATATATTAAAAATAA
66324392 ATTA-ATATA
1 ATTATATATA
66324401 AATAATAAAT
Statistics
Matches: 31, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
27 13 0.42
28 16 0.52
29 1 0.03
30 1 0.03
ACGTcount: A:0.52, C:0.00, G:0.05, T:0.44
Consensus pattern (29 bp):
ATTATATATAGTAGATATATTAAAAATAA
Found at i:66324390 original size:27 final size:28
Alignment explanation
Indices: 66324339--66324400 Score: 81
Period size: 27 Copynumber: 2.2 Consensus size: 28
66324329 AATGATATTA
*
66324339 TATATATTAGATTATATTAAAAATAAAT
1 TATATAGTAGATTATATTAAAAATAAAT
* *
66324367 TATATAGTAGA-TATATTTATAATAAAT
1 TATATAGTAGATTATATTAAAAATAAAT
66324394 TAATATA
1 T-ATATA
66324401 AATAATAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
27 15 0.50
28 15 0.50
ACGTcount: A:0.52, C:0.00, G:0.05, T:0.44
Consensus pattern (28 bp):
TATATAGTAGATTATATTAAAAATAAAT
Found at i:66330672 original size:31 final size:31
Alignment explanation
Indices: 66330637--66330715 Score: 92
Period size: 29 Copynumber: 2.6 Consensus size: 31
66330627 ACTGGCATAT
66330637 AGTACCTGATACAATATAAG-CATCGATACAA
1 AGTACCTGATA-AATATAAGTCATCGATACAA
* *
66330668 AGTACCTGAT-AATAT-AGTCATCGGTACAT
1 AGTACCTGATAAATATAAGTCATCGATACAA
*
66330697 AGTACCTAATATAATATAA
1 AGTACCTGATA-AATATAA
66330716 TCACCAGTAC
Statistics
Matches: 41, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
28 2 0.05
29 23 0.56
31 15 0.37
32 1 0.02
ACGTcount: A:0.43, C:0.16, G:0.13, T:0.28
Consensus pattern (31 bp):
AGTACCTGATAAATATAAGTCATCGATACAA
Found at i:66330731 original size:31 final size:31
Alignment explanation
Indices: 66330595--66330739 Score: 84
Period size: 31 Copynumber: 4.7 Consensus size: 31
66330585 AGGTATCCAA
*
66330595 CACCAGTACATAGTACCTAATA-AGTTATGAAT
1 CACCAGTACATAGTACCTAATATA-ATAT-AAT
** * * * * *
66330627 -ACTGGCATATAGTACCTGATACAATATAAG
1 CACCAGTACATAGTACCTAATATAATATAAT
* * * *
66330657 CATC-GATACAAAGTACCT--GATAATATAGT
1 CACCAG-TACATAGTACCTAATATAATATAAT
* *
66330686 CATCGGTACATAGTACCTAATATAATATAAT
1 CACCAGTACATAGTACCTAATATAATATAAT
* *
66330717 CACCAGTACGTAGTACCTGATAT
1 CACCAGTACATAGTACCTAATAT
66330740 TTTAAAACCC
Statistics
Matches: 84, Mismatches: 23, Indels: 13
0.70 0.19 0.11
Matches are distributed among these distances:
29 22 0.26
30 4 0.05
31 57 0.68
32 1 0.01
ACGTcount: A:0.39, C:0.19, G:0.14, T:0.28
Consensus pattern (31 bp):
CACCAGTACATAGTACCTAATATAATATAAT
Found at i:66332984 original size:54 final size:54
Alignment explanation
Indices: 66332923--66333209 Score: 244
Period size: 54 Copynumber: 5.3 Consensus size: 54
66332913 ACCCTTAATC
*
66332923 GATAAAATGACAATTTTACCCTTAATTGGTAAAATGATGATTTTGCCCTTATGT
1 GATAAAATGACAATTTTGCCCTTAATTGGTAAAATGATGATTTTGCCCTTATGT
** * * * * ** * *
66332977 GGCAAAATGACAATTTTTTCCCTTAATCGATGAAATGACAATTTGGCCCTTATGA
1 GATAAAATGACAA-TTTTGCCCTTAATTGGTAAAATGATGATTTTGCCCTTATGT
* * * * * *
66333032 GATAAAATGACTATTTTGGCC-TCATGAGGTAAAATGACTG-TTTTGCCCTCATGAC
1 GATAAAATGACAATTTTGCCCTTAAT-TGGTAAAATGA-TGATTTTGCCCTTATG-T
* * * **
66333087 G-TAAAATGATAATCTTGCCCTT-ATATGGCAAAATGACT-ATTTT-TTCTTATGT
1 GATAAAATGACAATTTTGCCCTTAAT-TGGTAAAATGA-TGATTTTGCCCTTATGT
* * *
66333139 GATAAAATGACAATTTTGCCCTTAATTGATAAAATAATGATTTTGGCCTTATGT
1 GATAAAATGACAATTTTGCCCTTAATTGGTAAAATGATGATTTTGCCCTTATGT
*
66333193 GATAAAATGACGATTTT
1 GATAAAATGACAATTTT
66333210 TCCATTATGA
Statistics
Matches: 180, Mismatches: 43, Indels: 20
0.74 0.18 0.08
Matches are distributed among these distances:
52 2 0.01
53 40 0.22
54 93 0.52
55 45 0.25
ACGTcount: A:0.33, C:0.14, G:0.16, T:0.37
Consensus pattern (54 bp):
GATAAAATGACAATTTTGCCCTTAATTGGTAAAATGATGATTTTGCCCTTATGT
Found at i:66333026 original size:55 final size:55
Alignment explanation
Indices: 66332926--66333048 Score: 140
Period size: 55 Copynumber: 2.3 Consensus size: 55
66332916 CTTAATCGAT
* * ** * * *
66332926 AAAATGACAA-TTTTACCCTTAATTGGTAAAATGATGATTTTGCCCTTATGTGGC
1 AAAATGACAATTTTTACCCTTAATCGATAAAATGACAATTTGGCCCTTATGAGAC
* * *
66332980 AAAATGACAATTTTTTCCCTTAATCGATGAAATGACAATTTGGCCCTTATGAGAT
1 AAAATGACAATTTTTACCCTTAATCGATAAAATGACAATTTGGCCCTTATGAGAC
*
66333035 AAAATGACTATTTT
1 AAAATGACAATTTT
66333049 GGCCTCATGA
Statistics
Matches: 57, Mismatches: 11, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
54 10 0.18
55 47 0.82
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.37
Consensus pattern (55 bp):
AAAATGACAATTTTTACCCTTAATCGATAAAATGACAATTTGGCCCTTATGAGAC
Found at i:66333058 original size:27 final size:27
Alignment explanation
Indices: 66332923--66333243 Score: 185
Period size: 27 Copynumber: 11.9 Consensus size: 27
66332913 ACCCTTAATC
* *
66332923 GATAAAATGACAATTTTACCCTTAATTG-
1 GATAAAATGACTATTTTGCCCTT-A-TGA
*
66332951 G-TAAAATGA-TGATTTTGCCCTTATGT
1 GATAAAATGACT-ATTTTGCCCTTATGA
** * * *
66332977 GGCAAAATGACAATTTTTTCCCTTAAT-C
1 GATAAAATGACTA-TTTTGCCCTT-ATGA
* * *
66333005 GATGAAATGACAATTTGGCCCTTATGA
1 GATAAAATGACTATTTTGCCCTTATGA
* *
66333032 GATAAAATGACTATTTTGGCCTCATGA
1 GATAAAATGACTATTTTGCCCTTATGA
* * *
66333059 GGTAAAATGACTGTTTTGCCCTCATGA
1 GATAAAATGACTATTTTGCCCTTATGA
*
66333086 CG-TAAAATGA-TAATCTTGCCCTTAT-A
1 -GATAAAATGACT-ATTTTGCCCTTATGA
** ** *
66333112 TGGCAAAATGACTATTTT-TTCTTATGT
1 -GATAAAATGACTATTTTGCCCTTATGA
* *
66333139 GATAAAATGACAATTTTGCCCTTAAT-T
1 GATAAAATGACTATTTTGCCCTT-ATGA
* * *
66333166 GATAAAAT-AATGATTTTGGCCTTATGT
1 GATAAAATGACT-ATTTTGCCCTTATGA
* * *
66333193 GATAAAATGACGATTTTTCCATTATGA
1 GATAAAATGACTATTTTGCCCTTATGA
* * *
66333220 GGTAAAATAACTATTTTACCCTTA
1 GATAAAATGACTATTTTGCCCTTA
66333244 GGTGGTAAGA
Statistics
Matches: 228, Mismatches: 48, Indels: 35
0.73 0.15 0.11
Matches are distributed among these distances:
25 2 0.01
26 29 0.13
27 170 0.75
28 25 0.11
29 2 0.01
ACGTcount: A:0.33, C:0.15, G:0.15, T:0.37
Consensus pattern (27 bp):
GATAAAATGACTATTTTGCCCTTATGA
Found at i:66333066 original size:82 final size:82
Alignment explanation
Indices: 66332914--66333069 Score: 201
Period size: 82 Copynumber: 1.9 Consensus size: 82
66332904 CGTACCTGGA
* * *
66332914 CCCTTAATCGATAAAATGACAATTTTACCCTTAATTGGTAAAATGATGATTTTGCCCTTATGTGG
1 CCCTTAATCGATAAAATGACAATTTGACCCTTAATTGGTAAAATGATGATTTTGCCCTCATGAGG
66332979 CAAAATGACAATTTTTT
66 CAAAATGACAATTTTTT
* * *
66332996 CCCTTAATCGATGAAATGACAATTTGGCCCTT-A-TGAGATAAAATGACT-ATTTTGGCCTCATG
1 CCCTTAATCGATAAAATGACAATTTGACCCTTAATTG-G-TAAAATGA-TGATTTTGCCCTCATG
*
66333058 AGGTAAAATGAC
63 AGGCAAAATGAC
66333070 TGTTTTGCCC
Statistics
Matches: 64, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
80 2 0.03
81 2 0.03
82 59 0.92
83 1 0.02
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.34
Consensus pattern (82 bp):
CCCTTAATCGATAAAATGACAATTTGACCCTTAATTGGTAAAATGATGATTTTGCCCTCATGAGG
CAAAATGACAATTTTTT
Found at i:66333243 original size:54 final size:54
Alignment explanation
Indices: 66332923--66333243 Score: 221
Period size: 54 Copynumber: 5.9 Consensus size: 54
66332913 ACCCTTAATC
* * *
66332923 GATAAAATGACAATTTTACCCTTAAT-TGGTAAAATGA-TGATTTTGCCCTTATGT
1 GATAAAATGACAATTTTGCCCTT-ATGAGGTAAAATAACT-ATTTTGCCCTTATGT
** * * * * * *
66332977 GGCAAAATGACAATTTTTTCCCTTAATCGA--TGAAATGACAATTTGGCCCTTATGA
1 GATAAAATGACAA-TTTTGCCCTT-AT-GAGGTAAAATAACTATTTTGCCCTTATGT
* * * * * * *
66333032 GATAAAATGACTATTTTGGCCTCATGAGGTAAAATGACTGTTTTGCCCTCATGAC
1 GATAAAATGACAATTTTGCCCTTATGAGGTAAAATAACTATTTTGCCCTTATG-T
* * * * **
66333087 G-TAAAATGATAATCTTGCCCTTAT-ATGGCAAAATGACTATTTT-TTCTTATGT
1 GATAAAATGACAATTTTGCCCTTATGA-GGTAAAATAACTATTTTGCCCTTATGT
*
66333139 GATAAAATGACAATTTTGCCCTTAATTGA--TAAAATAA-TGATTTTGGCCTTATGT
1 GATAAAATGACAATTTTGCCCTT-A-TGAGGTAAAATAACT-ATTTTGCCCTTATGT
* * * *
66333193 GATAAAATGACGATTTTTCCATTATGAGGTAAAATAACTATTTTACCCTTA
1 GATAAAATGACAATTTTGCCCTTATGAGGTAAAATAACTATTTTGCCCTTA
66333244 GGTGGTAAGA
Statistics
Matches: 208, Mismatches: 42, Indels: 34
0.73 0.15 0.12
Matches are distributed among these distances:
52 7 0.03
53 39 0.19
54 116 0.56
55 45 0.22
56 1 0.00
ACGTcount: A:0.33, C:0.15, G:0.15, T:0.37
Consensus pattern (54 bp):
GATAAAATGACAATTTTGCCCTTATGAGGTAAAATAACTATTTTGCCCTTATGT
Found at i:66333243 original size:134 final size:135
Alignment explanation
Indices: 66332923--66333227 Score: 343
Period size: 134 Copynumber: 2.3 Consensus size: 135
66332913 ACCCTTAATC
* * * *
66332923 GATAAAATGACAATTTTACCCTTAAT-TGGTAAAATGATGATTTTGCCCTTATGTGGCAAAATGA
1 GATAAAATGACGATTTTACCCTT-ATGAGGTAAAATGATAATTTTGCCCTTATATGGCAAAATGA
* *
66332987 CAATTTTTTCCCTTAATCGATGAAATGACAATTTGGCCCTTATGAGATAAAATGACTATTTTGGC
65 CAATTTTTT-CCTTAATCGATAAAATGACAATTTGGCCCTTATGAGATAAAATGAATATTTTGGC
66333052 CTCATGA
129 CTCATGA
* * * * *
66333059 GGTAAAATGACTG-TTTTGCCCTCATGACGTAAAATGATAATCTTGCCCTTATATGGCAAAATGA
1 GATAAAATGAC-GATTTTACCCTTATGAGGTAAAATGATAATTTTGCCCTTATATGGCAAAATGA
* * * *
66333123 CTATTTTTT-CTT-ATGTGATAAAATGACAATTTTGCCCTTAAT-TGATAAAAT-AATGATTTTG
65 CAATTTTTTCCTTAAT-CGATAAAATGACAATTTGGCCCTT-ATGAGATAAAATGAAT-ATTTTG
* *
66333184 GCCTTATGT
127 GCCTCATGA
* *
66333193 GATAAAATGACGATTTTTCCATTATGAGGTAAAAT
1 GATAAAATGACGATTTTACCCTTATGAGGTAAAAT
66333228 AACTATTTTA
Statistics
Matches: 141, Mismatches: 22, Indels: 14
0.80 0.12 0.08
Matches are distributed among these distances:
133 5 0.04
134 73 0.52
135 4 0.03
136 59 0.42
ACGTcount: A:0.33, C:0.14, G:0.16, T:0.37
Consensus pattern (135 bp):
GATAAAATGACGATTTTACCCTTATGAGGTAAAATGATAATTTTGCCCTTATATGGCAAAATGAC
AATTTTTTCCTTAATCGATAAAATGACAATTTGGCCCTTATGAGATAAAATGAATATTTTGGCCT
CATGA
Found at i:66335302 original size:21 final size:20
Alignment explanation
Indices: 66335261--66335303 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 20
66335251 TGTTTTATAT
66335261 TTAACATATTTTATTAATTAA
1 TTAACATATTTTATT-ATTAA
66335282 TTAACACTATTATTATT-TTAA
1 TTAACA-TATT-TTATTATTAA
66335303 T
1 T
66335304 CAACCATTAA
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
21 11 0.55
22 4 0.20
23 5 0.25
ACGTcount: A:0.40, C:0.07, G:0.00, T:0.53
Consensus pattern (20 bp):
TTAACATATTTTATTATTAA
Found at i:66337429 original size:55 final size:55
Alignment explanation
Indices: 66337363--66337473 Score: 213
Period size: 55 Copynumber: 2.0 Consensus size: 55
66337353 AAGTTTTTAG
66337363 TATGAAATTGTTTTGGAATATTAATGAGGAGGTCTTAAATAGCAAATTGACCAAT
1 TATGAAATTGTTTTGGAATATTAATGAGGAGGTCTTAAATAGCAAATTGACCAAT
*
66337418 TATGAAATTGTTTTGGAATATTAATGAGGAGGTCTTAAATAGCAAATTGATCAAT
1 TATGAAATTGTTTTGGAATATTAATGAGGAGGTCTTAAATAGCAAATTGACCAAT
66337473 T
1 T
66337474 TTAAGTTCAT
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
55 55 1.00
ACGTcount: A:0.38, C:0.06, G:0.20, T:0.36
Consensus pattern (55 bp):
TATGAAATTGTTTTGGAATATTAATGAGGAGGTCTTAAATAGCAAATTGACCAAT
Found at i:66338548 original size:46 final size:45
Alignment explanation
Indices: 66338498--66338670 Score: 154
Period size: 46 Copynumber: 3.8 Consensus size: 45
66338488 TTGAGCATCT
*
66338498 GAACTCGTTCAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAATGCCC
* * * *
66338544 GAACTCGTTGAGTTGAGTCTGAGTTC-GTGA--GATGTAACTAGGCATCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAA-T--GC--CC
* ** *
66338591 GAACTCGTTGAGTTGATTATGAGTTCACTTATGGATGTGAACGCCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAATGCCC
* * *
66338637 GAGCTCATTGAGTTGAGTCCGAGTTCGCTTATGG
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
66338671 GCGGGTTACA
Statistics
Matches: 101, Mismatches: 17, Indels: 18
0.74 0.12 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 4 0.04
46 54 0.53
47 26 0.26
48 4 0.04
50 4 0.04
51 2 0.02
ACGTcount: A:0.22, C:0.19, G:0.28, T:0.31
Consensus pattern (45 bp):
GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAATGCCC
Found at i:66338651 original size:93 final size:93
Alignment explanation
Indices: 66338492--66338663 Score: 254
Period size: 93 Copynumber: 1.8 Consensus size: 93
66338482 GGATGGTTGA
* * * *
66338492 GCATCTGAACTCGTTCAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTCAGTTGAGTACGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
*
66338557 TGAGTCTGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * * * *
66338585 GCATCCGAACTCGTTGAGTTGATTATGAGTTCACTTATGGATGTGAACGCCCGAGCTCATTGAGT
1 GCATCCGAACTCGTTCAGTTGAGTACGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
66338650 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
66338664 CTTATGGGCG
Statistics
Matches: 69, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
93 69 1.00
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (93 bp):
GCATCCGAACTCGTTCAGTTGAGTACGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:66341155 original size:22 final size:22
Alignment explanation
Indices: 66341113--66341156 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
66341103 AATAGCTTAA
* *
66341113 TTAACACCAATTTACATCCTTT
1 TTAACACAAATTTACACCCTTT
66341135 TTAACAACAAATTTA-ACCCTTT
1 TTAAC-ACAAATTTACACCCTTT
66341157 CGATCAGCAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 11 0.58
23 8 0.42
ACGTcount: A:0.36, C:0.25, G:0.00, T:0.39
Consensus pattern (22 bp):
TTAACACAAATTTACACCCTTT
Found at i:66347994 original size:19 final size:19
Alignment explanation
Indices: 66347970--66348009 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
66347960 TGGCCAAAGA
66347970 CACGGGCGTATGTCTCAGC
1 CACGGGCGTATGTCTCAGC
66347989 CACGGGCGTATGTCTCAGC
1 CACGGGCGTATGTCTCAGC
66348008 CA
1 CA
66348010 TGTGTGACAC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.17, C:0.33, G:0.30, T:0.20
Consensus pattern (19 bp):
CACGGGCGTATGTCTCAGC
Found at i:66348664 original size:26 final size:26
Alignment explanation
Indices: 66348609--66348687 Score: 86
Period size: 26 Copynumber: 3.0 Consensus size: 26
66348599 TGTACAAATC
* * * * *
66348609 ATATAGCCATTCAAGCTATAAAAATC
1 ATATAACCATTCAAGTTATACAAGTT
*
66348635 ATATAACCATTTAAGTTATACAAGTT
1 ATATAACCATTCAAGTTATACAAGTT
* *
66348661 ATATATCTATTCAAGTTATACAAGTT
1 ATATAACCATTCAAGTTATACAAGTT
66348687 A
1 A
66348688 ATTCATTACC
Statistics
Matches: 44, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 44 1.00
ACGTcount: A:0.43, C:0.14, G:0.08, T:0.35
Consensus pattern (26 bp):
ATATAACCATTCAAGTTATACAAGTT
Found at i:66358860 original size:21 final size:21
Alignment explanation
Indices: 66358836--66358893 Score: 89
Period size: 21 Copynumber: 2.8 Consensus size: 21
66358826 CGACACAACC
*
66358836 AAAGGATGTTGCGACATAGCT
1 AAAGGATGTTGAGACATAGCT
*
66358857 AAAGGATGTTAAGACATAGCT
1 AAAGGATGTTGAGACATAGCT
*
66358878 AGAGGATGTTGAGACA
1 AAAGGATGTTGAGACA
66358894 CAGTCTTGAA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.38, C:0.10, G:0.29, T:0.22
Consensus pattern (21 bp):
AAAGGATGTTGAGACATAGCT
Found at i:66358962 original size:22 final size:22
Alignment explanation
Indices: 66358934--66358978 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
66358924 CTGAAAATCA
66358934 TGTCGTGACATAGGTAAGAGGG
1 TGTCGTGACATAGGTAAGAGGG
66358956 TGTCGTGACATAGGTAAGAGGG
1 TGTCGTGACATAGGTAAGAGGG
66358978 T
1 T
66358979 CAAGAAAAGG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.27, C:0.09, G:0.40, T:0.24
Consensus pattern (22 bp):
TGTCGTGACATAGGTAAGAGGG
Found at i:66359145 original size:22 final size:22
Alignment explanation
Indices: 66359117--66359194 Score: 66
Period size: 22 Copynumber: 3.3 Consensus size: 22
66359107 TACTTAAGTT
66359117 TTATTTTCTGTTTCCTACCTAA
1 TTATTTTCTGTTTCCTACCTAA
* ** *
66359139 TTATTTTCTATTTTTTTTACTTAA
1 TTATTTTC--TGTTTCCTACCTAA
*
66359163 GTTTTATTTTTTGTTTCCTACCTAA
1 ---TTATTTTCTGTTTCCTACCTAA
66359188 TTATTTT
1 TTATTTT
66359195 ATATTTGTAG
Statistics
Matches: 42, Mismatches: 9, Indels: 10
0.69 0.15 0.16
Matches are distributed among these distances:
22 15 0.36
24 10 0.24
25 10 0.24
27 7 0.17
ACGTcount: A:0.18, C:0.14, G:0.04, T:0.64
Consensus pattern (22 bp):
TTATTTTCTGTTTCCTACCTAA
Found at i:66359145 original size:27 final size:26
Alignment explanation
Indices: 66359115--66359202 Score: 78
Period size: 27 Copynumber: 3.5 Consensus size: 26
66359105 TTTACTTAAG
66359115 TTTTATTTTCTGTTTCCTACCTAATTA
1 TTTTATTTT-TGTTTCCTACCTAATTA
* * *
66359142 TTTTCTATTTT-TTT--TACTTAA--G
1 TTTTAT-TTTTGTTTCCTACCTAATTA
66359164 TTTTATTTTTTGTTTCCTACCTAATTA
1 TTTTA-TTTTTGTTTCCTACCTAATTA
*
66359191 TTTTATATTTGT
1 TTTTATTTTTGT
66359203 AGTTTAAGTA
Statistics
Matches: 47, Mismatches: 7, Indels: 15
0.68 0.10 0.22
Matches are distributed among these distances:
22 8 0.17
23 4 0.09
24 6 0.13
25 6 0.13
26 9 0.19
27 11 0.23
28 3 0.06
ACGTcount: A:0.18, C:0.12, G:0.05, T:0.65
Consensus pattern (26 bp):
TTTTATTTTTGTTTCCTACCTAATTA
Found at i:66359172 original size:49 final size:49
Alignment explanation
Indices: 66359102--66359200 Score: 180
Period size: 49 Copynumber: 2.0 Consensus size: 49
66359092 TTATGGACAG
*
66359102 TTTTTTACTTAAGTTTTATTTTCTGTTTCCTACCTAATTATTTTCTATT
1 TTTTTTACTTAAGTTTTATTTTCTGTTTCCTACCTAATTATTTTATATT
*
66359151 TTTTTTACTTAAGTTTTATTTTTTGTTTCCTACCTAATTATTTTATATT
1 TTTTTTACTTAAGTTTTATTTTCTGTTTCCTACCTAATTATTTTATATT
66359200 T
1 T
66359201 GTAGTTTAAG
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 48 1.00
ACGTcount: A:0.19, C:0.12, G:0.04, T:0.65
Consensus pattern (49 bp):
TTTTTTACTTAAGTTTTATTTTCTGTTTCCTACCTAATTATTTTATATT
Found at i:66364215 original size:45 final size:45
Alignment explanation
Indices: 66364117--66364334 Score: 228
Period size: 45 Copynumber: 4.9 Consensus size: 45
66364107 TTTTCTCAAA
* * * * *
66364117 TCACCGGCATT-TTGCCTGCTAGGCTC-GAGACCCGATTA-TCATT
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGT-ATC
* *
66364160 TCACCTGCATTATAGCCTGCGAGGCTCGAAA-GCCCGAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTC-AAAGGCCCGAATAGTATC
* * *
66364205 TCACCGGCATTATAGCCTGCTGGGCTCAAAGGCTCGAATAGTGTC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
** * * * *
66364250 TCACTAGCATAATAACCTGCTAGGCTCAAAGGCCCAAATAGTGTC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
* *
66364295 TCACCGGCATAATAGCCTACTAGGCTCAAAGGCCCGAATA
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATA
66364335 TAATACCAGC
Statistics
Matches: 146, Mismatches: 24, Indels: 8
0.82 0.13 0.04
Matches are distributed among these distances:
43 10 0.07
44 16 0.11
45 118 0.81
46 2 0.01
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (45 bp):
TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
Found at i:66364375 original size:38 final size:38
Alignment explanation
Indices: 66364332--66364412 Score: 117
Period size: 38 Copynumber: 2.1 Consensus size: 38
66364322 AAAGGCCCGA
* *
66364332 ATATAATACCAGCACTAGGCCTACGGGATTTAACCCAG
1 ATATAATACCAGCACGAAGCCTACGGGATTTAACCCAG
** *
66364370 ATATAATACCAGCACGAAGCCTGTGGGATTTAACCCGG
1 ATATAATACCAGCACGAAGCCTACGGGATTTAACCCAG
66364408 ATATA
1 ATATA
66364413 CATCAAATAT
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.35, C:0.23, G:0.20, T:0.22
Consensus pattern (38 bp):
ATATAATACCAGCACGAAGCCTACGGGATTTAACCCAG
Found at i:66366457 original size:46 final size:46
Alignment explanation
Indices: 66366407--66366582 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
66366397 TGGTTGAGCA
66366407 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
66366453 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
66366498 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
66366546 CCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
66366583 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 63 0.58
47 29 0.27
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:66366563 original size:93 final size:93
Alignment explanation
Indices: 66366404--66366574 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
66366394 GGATGGTTGA
* * *
66366404 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
66366469 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
*
66366497 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCATTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
66366562 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
66366575 ACTTATGGGC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:66370336 original size:23 final size:23
Alignment explanation
Indices: 66370309--66370376 Score: 58
Period size: 23 Copynumber: 3.2 Consensus size: 23
66370299 CTTAAGGCAA
66370309 GTGGTAGTCGATTTTTCGGTTAG
1 GTGGTAGTCGATTTTTCGGTTAG
*** *
66370332 GTGGT--T-G--TTAAGGGTT-T
1 GTGGTAGTCGATTTTTCGGTTAG
66370349 GTGGTAGTCGATTTTTCGGTTAG
1 GTGGTAGTCGATTTTTCGGTTAG
66370372 GTGGT
1 GTGGT
66370377 TGTTAAGGGT
Statistics
Matches: 31, Mismatches: 8, Indels: 12
0.61 0.16 0.24
Matches are distributed among these distances:
17 5 0.16
18 6 0.19
19 1 0.03
20 2 0.06
21 1 0.03
22 6 0.19
23 10 0.32
ACGTcount: A:0.12, C:0.06, G:0.38, T:0.44
Consensus pattern (23 bp):
GTGGTAGTCGATTTTTCGGTTAG
Found at i:66370354 original size:40 final size:40
Alignment explanation
Indices: 66370309--66370388 Score: 160
Period size: 40 Copynumber: 2.0 Consensus size: 40
66370299 CTTAAGGCAA
66370309 GTGGTAGTCGATTTTTCGGTTAGGTGGTTGTTAAGGGTTT
1 GTGGTAGTCGATTTTTCGGTTAGGTGGTTGTTAAGGGTTT
66370349 GTGGTAGTCGATTTTTCGGTTAGGTGGTTGTTAAGGGTTT
1 GTGGTAGTCGATTTTTCGGTTAGGTGGTTGTTAAGGGTTT
66370389 TTCTAACACT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.12, C:0.05, G:0.38, T:0.45
Consensus pattern (40 bp):
GTGGTAGTCGATTTTTCGGTTAGGTGGTTGTTAAGGGTTT
Found at i:66371159 original size:27 final size:27
Alignment explanation
Indices: 66371066--66371159 Score: 102
Period size: 27 Copynumber: 3.5 Consensus size: 27
66371056 ACCCCGATTT
*
66371066 GTAAAATGACT-AAAGTA-CCCTCATAAG
1 GTAAAATGACTGTAA-TACCCCT-ATAAG
* * *
66371093 ATAAAATGACTGAAATACCCCTATAGG
1 GTAAAATGACTGTAATACCCCTATAAG
*
66371120 GTAAAATGACTGTAATAGCCCTATAAG
1 GTAAAATGACTGTAATACCCCTATAAG
*
66371147 GTAAACTGACTGT
1 GTAAAATGACTGT
66371160 TTTGCCCTTA
Statistics
Matches: 58, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
27 51 0.88
28 7 0.12
ACGTcount: A:0.41, C:0.17, G:0.17, T:0.24
Consensus pattern (27 bp):
GTAAAATGACTGTAATACCCCTATAAG
Found at i:66371178 original size:27 final size:27
Alignment explanation
Indices: 66371119--66371250 Score: 124
Period size: 27 Copynumber: 4.9 Consensus size: 27
66371109 ACCCCTATAG
* * **
66371119 GGTAAAATGACTGTAATAGCCC-TATAA
1 GGTAAAATGACTGT-TTTGCCCTTATGT
*
66371146 GGTAAACTGACTGTTTTGCCCTTATGT
1 GGTAAAATGACTGTTTTGCCCTTATGT
* * * *
66371173 GTTAAAATGACAGCTTTGCCCTTATAT
1 GGTAAAATGACTGTTTTGCCCTTATGT
*
66371200 GGTAAAATGA-TCGTTTTGCCCTTATGA
1 GGTAAAATGACT-GTTTTGCCCTTATGT
* *
66371227 GGTAAAATGACTATTTTTCCCTTA
1 GGTAAAATGACTGTTTTGCCCTTA
66371251 CGTAGGATGA
Statistics
Matches: 85, Mismatches: 17, Indels: 6
0.79 0.16 0.06
Matches are distributed among these distances:
26 5 0.06
27 79 0.93
28 1 0.01
ACGTcount: A:0.29, C:0.17, G:0.18, T:0.36
Consensus pattern (27 bp):
GGTAAAATGACTGTTTTGCCCTTATGT
Found at i:66371179 original size:54 final size:54
Alignment explanation
Indices: 66371119--66371238 Score: 138
Period size: 54 Copynumber: 2.2 Consensus size: 54
66371109 ACCCCTATAG
* *
66371119 GGTAAAATGACTG-TAATAGCCC-TATAAGGTAAACTGA-CTGTTTTGCCCTTATGT
1 GGTAAAATGACTGCT--TAGCCCTTATAAGGTAAAATGATC-GTTTTGCCCTTATGA
* * * *
66371173 GTTAAAATGACAGCTTTGCCCTTATATGGTAAAATGATCGTTTTGCCCTTATGA
1 GGTAAAATGACTGCTTAGCCCTTATAAGGTAAAATGATCGTTTTGCCCTTATGA
66371227 GGTAAAATGACT
1 GGTAAAATGACT
66371239 ATTTTTCCCT
Statistics
Matches: 55, Mismatches: 8, Indels: 6
0.80 0.12 0.09
Matches are distributed among these distances:
53 5 0.09
54 48 0.87
55 2 0.04
ACGTcount: A:0.30, C:0.16, G:0.20, T:0.34
Consensus pattern (54 bp):
GGTAAAATGACTGCTTAGCCCTTATAAGGTAAAATGATCGTTTTGCCCTTATGA
Found at i:66371615 original size:27 final size:27
Alignment explanation
Indices: 66371585--66371676 Score: 98
Period size: 27 Copynumber: 3.4 Consensus size: 27
66371575 CCCCGATTTG
* *
66371585 TAAAATGATTGAAGTA-CCCTCATAGGA
1 TAAAATGACTGAAATACCCCT-ATAGGA
*
66371612 TAAAATGACTGAAATACCCCTATAGGG
1 TAAAATGACTGAAATACCCCTATAGGA
* *
66371639 TAAAATGACTGTAATAGCCCTATAAGG-
1 TAAAATGACTGAAATACCCCTAT-AGGA
*
66371666 TAAACTGACTG
1 TAAAATGACTG
66371677 TTTTGCCCTT
Statistics
Matches: 57, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
27 50 0.88
28 7 0.12
ACGTcount: A:0.40, C:0.16, G:0.18, T:0.25
Consensus pattern (27 bp):
TAAAATGACTGAAATACCCCTATAGGA
Found at i:66371696 original size:27 final size:27
Alignment explanation
Indices: 66371637--66371768 Score: 124
Period size: 27 Copynumber: 4.9 Consensus size: 27
66371627 ACCCCTATAG
* * **
66371637 GGTAAAATGACTGTAATAGCCC-TATAA
1 GGTAAAATGACTGT-TTTGCCCTTATGT
*
66371664 GGTAAACTGACTGTTTTGCCCTTATGT
1 GGTAAAATGACTGTTTTGCCCTTATGT
* * * *
66371691 GTTAAAATGACAGCTTTGCCCTTATAT
1 GGTAAAATGACTGTTTTGCCCTTATGT
*
66371718 GGTAAAATGA-TGGTTTTGCCCTTATGA
1 GGTAAAATGACT-GTTTTGCCCTTATGT
* *
66371745 GGTAAAATGACTATTTTTCCCTTA
1 GGTAAAATGACTGTTTTGCCCTTA
66371769 CGTAGGATGA
Statistics
Matches: 85, Mismatches: 17, Indels: 6
0.79 0.16 0.06
Matches are distributed among these distances:
26 5 0.06
27 79 0.93
28 1 0.01
ACGTcount: A:0.29, C:0.16, G:0.19, T:0.36
Consensus pattern (27 bp):
GGTAAAATGACTGTTTTGCCCTTATGT
Found at i:66371697 original size:54 final size:54
Alignment explanation
Indices: 66371637--66371756 Score: 138
Period size: 54 Copynumber: 2.2 Consensus size: 54
66371627 ACCCCTATAG
* *
66371637 GGTAAAATGACTG-TAATAGCCC-TATAAGGTAAACTGACT-GTTTTGCCCTTATGT
1 GGTAAAATGACTGCT--TAGCCCTTATAAGGTAAAATGA-TGGTTTTGCCCTTATGA
* * * *
66371691 GTTAAAATGACAGCTTTGCCCTTATATGGTAAAATGATGGTTTTGCCCTTATGA
1 GGTAAAATGACTGCTTAGCCCTTATAAGGTAAAATGATGGTTTTGCCCTTATGA
66371745 GGTAAAATGACT
1 GGTAAAATGACT
66371757 ATTTTTCCCT
Statistics
Matches: 55, Mismatches: 8, Indels: 6
0.80 0.12 0.09
Matches are distributed among these distances:
53 6 0.11
54 48 0.87
55 1 0.02
ACGTcount: A:0.30, C:0.15, G:0.21, T:0.34
Consensus pattern (54 bp):
GGTAAAATGACTGCTTAGCCCTTATAAGGTAAAATGATGGTTTTGCCCTTATGA
Found at i:66372110 original size:18 final size:18
Alignment explanation
Indices: 66372084--66372118 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
66372074 GGACTTGCAT
66372084 ACTACTTACTGTTACTGC
1 ACTACTTACTGTTACTGC
*
66372102 ACTATTTACTGTTACTG
1 ACTACTTACTGTTACTG
66372119 TAATAGGCTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.23, C:0.23, G:0.11, T:0.43
Consensus pattern (18 bp):
ACTACTTACTGTTACTGC
Found at i:66377642 original size:39 final size:40
Alignment explanation
Indices: 66377481--66377704 Score: 262
Period size: 40 Copynumber: 5.7 Consensus size: 40
66377471 GCTCCTCGTT
* * *
66377481 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAATTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
66377521 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
66377561 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * * *
66377601 CAAATGCCTTCGGG-CTTAGCTCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** * *
66377640 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGAT-TTAGTAAC-TCGCA
*
66377681 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
66377705 CAGCATTCAA
Statistics
Matches: 164, Mismatches: 14, Indels: 13
0.86 0.07 0.07
Matches are distributed among these distances:
38 2 0.01
39 48 0.29
40 105 0.64
41 9 0.05
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:66377665 original size:79 final size:80
Alignment explanation
Indices: 66377481--66377704 Score: 280
Period size: 79 Copynumber: 2.8 Consensus size: 80
66377471 GCTCCTCGTT
* * *
66377481 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCG
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCG
*
66377545 GATTTAGTAACTCGCA
65 GAATTAGTAACTCGCA
* *
66377561 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGCTCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
*
66377625 AATTAGTATCTCGCA
66 AATTAGTAACTCGCA
* * *
66377640 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCACTTAGCAC-AA-GCCTTCGGGACTTAGCC
1 CAAATGCCTTCGGGA-CTTAGCCCGGAT-TTAGTAAC-TCGCACAAATGCCTTCGGGACTTAGCC
66377701 CGGA
63 CGGA
66377705 CAGCATTCAA
Statistics
Matches: 127, Mismatches: 12, Indels: 11
0.85 0.08 0.07
Matches are distributed among these distances:
78 12 0.09
79 58 0.46
80 55 0.43
81 2 0.02
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (80 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
AATTAGTAACTCGCA
Found at i:66397251 original size:608 final size:617
Alignment explanation
Indices: 66394212--66399290 Score: 8304
Period size: 608 Copynumber: 8.5 Consensus size: 617
66394202 TTTGTGGCTT
66394212 TTCAC-ATTTTG-AATGAT-TAACA-A-TT-TATTATGTGTACAGATAATTAATTAAGTAAAAAT
1 TTCACAATTTTGAAATGATGTAACAGATTTATATTATGTGTACAGATAATTAATTAAGTAAAAAT
66394271 CACTAAATTGAAAAAGGTGCAAAAATAGATTTCTATTAGGTAAAGGGGTCAATTTATTATGGATT
66 CACTAAATT-AAAAAGGTGCAAAAATAGATTTCTATTAGGTAAAGGGGTCAATTTATTATGGATT
66394336 ATCAAA-TAATGGACTTAAATGGTAAATGCACCAAATGAACTTTGAG-GGAT-GTTTTGGGTGAT
130 ATCAAACT-ATGGACTTAAATGGTAAATGCACCAAATGAACTTTGAGTGGATGGTTTTGGGTGAT
*
66394398 TAAATGCATGAAATTTGATTTTTTAAGGG-AAAATTGT-AATTTGTAATTAAATGGAAATTAAAA
194 TAAATGCATGAAATTTGATTTTTTAAGGGAAAAATTGTAAATTTGTAATCAAATGGAAATTAAAA
66394461 CAAACTAAAAGA-AAAATGTTATCATCTCCTCTAATTTGCTATTTTGC-AACCGAATAACAGAGA
259 CAAACTAAAAGACAAAATGTTATCATCTCCTCTAATTTGCTATTTTGCAAACCGAATAACAGAGA
*
66394524 GGAAGAAGCTTCCGGTCGTGGAGTTTTTACATGCATGATCAAG-AACGAACCAAACGGATCTAAA
324 GGAAGAAGCTTCCGGTCATGGAGTTTTTACATGCATGATCAAGAAACGAACCAAACGGATCTAAA
66394588 CCGAGGAAAAGCTAATGTGTCAGATTAGTCGGCTGCTTCA-TTTTACAACTATATTTGTCGAGGT
389 CCGAGGAAAAGCTAATGTGTCAGATTAGTCGGCTGCTTCATTTTTACAACTATATTTGTCGAGGT
*
66394652 AAGTTTGTAGTATAAAATATATATGTTTGTTTCCTTATGATTATGTATATC-ATTGTTAGTT-AA
454 AAGTTTGTAGTATATAATATATATGTTTGTTTCCTTATGATTATGTATATCAATTGTTAGTTAAA
66394715 TTATAATTAATGTG-AAATTTCAATGTTTGCTTGT-AATTATTAAATGTTGGAATTAAGTACAAA
519 TTATAATTAATGTGAAAATTTC-ATGTTTGCTTGTAAATTATTAAATGTTGGAATTAAGTACAAA
66394778 TGG-AAATGAATATTTGGTCTGGCAAATCTTGTGG
583 TGGAAAATGAATATTTGGTCTGGCAAATCTTGTGG
*
66394812 TTTCACAATTTTG-AATGATGTAACAGATTAATATTATGTGTACAGATAATTAA-TAAGT-AAAA
1 -TTCACAATTTTGAAATGATGTAACAGATTTATATTATGTGTACAGATAATTAATTAAGTAAAAA
66394874 TCACTAAATTGAAAAAGGTGCAAAAATAGATTTCTATTAGGTAAAGGGGTCAATTTA-TATGG--
65 TCACTAAATT-AAAAAGGTGCAAAAATAGATTTCTATTAGGTAAAGGGGTCAATTTATTATGGAT
66394936 -AT---A-TAT-GACTTAAAT-GTAAATGCACCAAATGAAC-TTGAGTGGAT-GTTTTGGGTGAT
129 TATCAAACTATGGACTTAAATGGTAAATGCACCAAATGAACTTTGAGTGGATGGTTTTGGGTGAT
66394992 TAAATGC-TGAAATTTGATTTTTT-AGGGAAAAATTGTAAATTTGTAAT-AAATGGAAA--AAAA
194 TAAATGCATGAAATTTGATTTTTTAAGGGAAAAATTGTAAATTTGTAATCAAATGGAAATTAAAA
66395052 CAAACT-AAAGACAAAATGTTATCATCTCCTCTAATTTGCTA-TTTGCAAACCGAATAACAGAGA
259 CAAACTAAAAGACAAAATGTTATCATCTCCTCTAATTTGCTATTTTGCAAACCGAATAACAGAGA
66395115 GGAAGAAGCTT-CGGTCAT-GAGTTTTTACATGCATGATC-AGAAACGAACCAAACGGATCTAAA
324 GGAAGAAGCTTCCGGTCATGGAGTTTTTACATGCATGATCAAGAAACGAACCAAACGGATCTAAA
66395177 CCGAGGAAAAGCTAATGTGTCAGATTAGTCGGCTGCTTCATTTTTACAACTATATTTGTCGAGGT
389 CCGAGGAAAAGCTAATGTGTCAGATTAGTCGGCTGCTTCATTTTTACAACTATATTTGTCGAGGT
66395242 AAGTTTGTAGTATATAATATATATGTTTGTTTCCTTATGATTATGTA-ATCAATTGTTAGTTAAA
454 AAGTTTGTAGTATATAATATATATGTTTGTTTCCTTATGATTATGTATATCAATTGTTAGTTAAA
66395306 TTATAATTAATGT-AAAATTTCATTGTTTGCTTGT-AATTATTAAATGTTGGAA-TAAGTACAAA
519 TTATAATTAATGTGAAAATTTCA-TGTTTGCTTGTAAATTATTAAATGTTGGAATTAAGTACAAA
66395368 TGGAAAATGAATATTTGGTCTGG-AAATCTTGTGG
583 TGGAAAATGAATATTTGGTCTGGCAAATCTTGTGG
66395402 TTTCAC-ATTTTGAAATGATGTAACAGA-TTATA-TA--TGTACA-ATAATTAATTAAGT-AAAA
1 -TTCACAATTTTGAAATGATGTAACAGATTTATATTATGTGTACAGATAATTAATTAAGTAAAAA
*
66395460 TCA-TAAATTGAAAA-G-GC-AAAATAGATTTCTATTAGGTAAA-GGG-C-A-TTATTAT-GA-T
65 TCACTAAATTAAAAAGGTGCAAAAATAGATTTCTATTAGGTAAAGGGGTCAATTTATTATGGATT
66395515 ATCAAACTATGGACTTAAATGGTAAATGCACCAAATGAAC-TTGAGTGGATGGTTTT-GGTGATT
130 ATCAAACTATGGACTTAAATGGTAAATGCACCAAATGAACTTTGAGTGGATGGTTTTGGGTGATT
66395578 -AATGCA-GAAATTTGATTTTTTAAGGGAAAAATTGTAAATTTGTAATCAAATGGAAATTAAAAC
195 AAATGCATGAAATTTGATTTTTTAAGGGAAAAATTGTAAATTTGTAATCAAATGGAAATTAAAAC
66395641 AAACT-AAAGACAAAATGTTATCATCTCCTCTAATTTG-TATTTTGCAAA-CGAATAACAGAGAG
260 AAACTAAAAGACAAAATGTTATCATCTCCTCTAATTTGCTATTTTGCAAACCGAATAACAGAGAG
66395703 GAAGAAGCTTCCGGTCATGGAGTTTTTACAT-CATGATCAAGAAACGAACCAAACGGATCTAAAC
325 GAAGAAGCTTCCGGTCATGGAGTTTTTACATGCATGATCAAGAAACGAACCAAACGGATCTAAAC
*
66395767 CGAGGAAAAGCTAATGTGTCAGATTAGTCGGCTGCATCATTTTTACAACTATATTTGTCGAGGTA
390 CGAGGAAAAGCTAATGTGTCAGATTAGTCGGCTGCTTCATTTTTACAACTATATTTGTCGAGGTA
66395832 AG-TTGTAGT-TATAATATATATGTTTGTTTCCTTATGATTATGTATATCAATTGTTAGTTAAAT
455 AGTTTGTAGTATATAATATATATGTTTGTTTCCTTATGATTATGTATATCAATTGTTAGTTAAAT
66395895 TATAATTAATGTGAAAATTTCATGTTTGCTTGTAAATT-TTAAATGTTGGAATTAAGTACAAATG
520 TATAATTAATGTGAAAATTTCATGTTTGCTTGTAAATTATTAAATGTTGGAATTAAGTACAAATG
66395959 GAAAATGAATATTTGGTCTGGCAAATCTT-TGG
585 GAAAATGAATATTTGGTCTGGCAAATCTTGTGG
66395991 TTCACAA-TTTGAAATGACTGTAACAGA-TTATATTATGTGTACAGATAATTAATTAAGT-AAAA
1 TTCACAATTTTGAAATGA-TGTAACAGATTTATATTATGTGTACAGATAATTAATTAAGTAAAAA
*
66396053 TCAC-AAATTGAAAAGGTGCAAAAATAGATTTCTATTAGGTAAAGGGGTCAATTTATTATGGATT
65 TCACTAAATTAAAAAGGTGCAAAAATAGATTTCTATTAGGTAAAGGGGTCAATTTATTATGGATT
66396117 ATCAAACTAATGGACTTAAATGGTAAATGCACCAAATGAACTTTGAGTGGATGGTTTTGGGTGAT
130 ATCAAACT-ATGGACTTAAATGGTAAATGCACCAAATGAACTTTGAGTGGATGGTTTTGGGTGAT
*
66396182 TAAATGCATGAAATTTGATTTTTTAAGGGAAAAATTGT-AATTTGTAATTAAATGGAAATTAAAA
194 TAAATGCATGAAATTTGATTTTTTAAGGGAAAAATTGTAAATTTGTAATCAAATGGAAATTAAAA
66396246 CAAACTAAAAGACAAAAATGTTATCATCTCCTCTAATTTGCTATTTTGCAAACCGAATAACAGAG
259 CAAACTAAAAGAC-AAAATGTTATCATCTCCTCTAATTTGCTATTTTGCAAACCGAATAACAGAG
66396311 AGGAAGAAGCTT-CGGTCATGGAGTTTTTACATGC-TGATCAAGAAACGAACCAAACGGATCTAA
323 AGGAAGAAGCTTCCGGTCATGGAGTTTTTACATGCATGATCAAGAAACGAACCAAACGGATCTAA
66396374 ACCGAGGAAAAGCTAATGTGTCAGATTAGTCGGCTGCTTCATTTTTACAACTATATTTGTCGAGG
388 ACCGAGGAAAAGCTAATGTGTCAGATTAGTCGGCTGCTTCATTTTTACAACTATATTTGTCGAGG
66396439 TAAGTTTGTAGTATA-AATATATATGTTTGTTTCCTTATGATTATGTATATCAATTGTTAGTTAA
453 TAAGTTTGTAGTATATAATATATATGTTTGTTTCCTTATGATTATGTATATCAATTGTTAGTTAA
66396503 ATTATAATTAATGTG-AAATTTCATGTTTGCTTGTAAATTATTAAATGTTGGAATTAAGTACAAA
518 ATTATAATTAATGTGAAAATTTCATGTTTGCTTGTAAATTATTAAATGTTGGAATTAAGTACAAA
66396567 TGGAAAATGAATATTTGGTCGTGGCAAATCTTGTGG
583 TGGAAAATGAATATTTGGTC-TGGCAAATCTTGTGG
*
66396603 TTTCACAATTTTGAAAGGATGTAACAGATTTATATTATGTGTACAGATAATTAATTAAGTAAAAA
1 -TTCACAATTTTGAAATGATGTAACAGATTTATATTATGTGTACAGATAATTAATTAAGTAAAAA
66396668 TCACTAAATTAAAAAGGTGCAAAAATAGATTTCTATTAGGTAAAGGGGTCAATTTA-TATGGATT
65 TCACTAAATTAAAAAGGTGCAAAAATAGATTTCTATTAGGTAAAGGGGTCAATTTATTATGGATT
66396732 ATCAAACTAATGGACTTAAATGGTAAATGCACCAAATGAAC-TTGAGTGGATGGTTTTGGGTGAT
130 ATCAAACT-ATGGACTTAAATGGTAAATGCACCAAATGAACTTTGAGTGGATGGTTTTGGGTGAT
*
66396796 TAAATGCATGAAATTTGATTTTTTTAGGGAAAAATTGTAAATTTGTAATCAAATGG-AATTAAAA
194 TAAATGCATGAAATTTGATTTTTTAAGGGAAAAATTGTAAATTTGTAATCAAATGGAAATTAAAA
66396860 CAAACTAAAAGACAAAATGTTATCATCT-CTC-AATTTGCTATTTTGCAAACCGAATAACAGAGA
259 CAAACTAAAAGACAAAATGTTATCATCTCCTCTAATTTGCTATTTTGCAAACCGAATAACAGAGA
66396923 GGAAGAAGCTT-CGGTCATGGAGTTTTTACAT-CATGATCAAGAAACGAACCAAA-GGATCTAAA
324 GGAAGAAGCTTCCGGTCATGGAGTTTTTACATGCATGATCAAGAAACGAACCAAACGGATCTAAA
66396985 CCGAGGAAAAGCTAATGT-TCAGATTAGTCGGCTGC-TCATTTTTACAACTATATTTGTCGAGGT
389 CCGAGGAAAAGCTAATGTGTCAGATTAGTCGGCTGCTTCATTTTTACAACTATATTTGTCGAGGT
66397048 AAGTTTGTAGTATATAATATATATGTTTGTTTCCTTATGA-TATGTATATCAATTGTTAGTTAAA
454 AAGTTTGTAGTATATAATATATATGTTTGTTTCCTTATGATTATGTATATCAATTGTTAGTTAAA
*
66397112 TTATAATTAATGTGAAAATTTCATTGTTTGCTTGT-AATTCTTAAATGTTGGAATTAAGTACAAA
519 TTATAATTAATGTGAAAATTTCA-TGTTTGCTTGTAAATTATTAAATGTTGGAATTAAGTACAAA
66397176 TGGAAAATGAATATTTGGTCATGGCAAATCTTGTGG
583 TGGAAAATGAATATTTGGTC-TGGCAAATCTTGTGG
66397212 TTCACAATTTTGAAATGATGTAACAGATTTATATTATGTGTACAGATAATTAATTAAGTAAAAAT
1 TTCACAATTTTGAAATGATGTAACAGATTTATATTATGTGTACAGATAATTAATTAAGTAAAAAT
*
66397277 CACTAAATTGAAAAGGTGCAAAAATAGATTTCTATTAGGTAAAGGGGTCAATTTATTATGGATTA
66 CACTAAATTAAAAAGGTGCAAAAATAGATTTCTATTAGGTAAAGGGGTCAATTTATTATGGATTA
*
66397342 TCAAACTATGGACTTAAATGGTAAATGCACCAAATGAA-TTTGAGTGGATGGTTTTGGGCGATTA
131 TCAAACTATGGACTTAAATGGTAAATGCACCAAATGAACTTTGAGTGGATGGTTTTGGGTGATTA
66397406 AATGCA-GAAATTTGATTTTTT-AGGGAAAAATTGTAAATTTGTAATCAAATGGAAATTAAAACA
196 AATGCATGAAATTTGATTTTTTAAGGGAAAAATTGTAAATTTGTAATCAAATGGAAATTAAAACA
66397469 AACTAAAAGACAAAAATGTTATCATCTCCTCTAATTTG-TA-TTTGCAAACCGAATAACAGAGAG
261 AACTAAAAGAC-AAAATGTTATCATCTCCTCTAATTTGCTATTTTGCAAACCGAATAACAGAGAG
* *
66397532 GAAGAAG-TTCCGGTCATGGAG-TTTTACATGCATGATCAAG-AACGAACCAACCAG-TCTAAAC
325 GAAGAAGCTTCCGGTCATGGAGTTTTTACATGCATGATCAAGAAACGAACCAAACGGATCTAAAC
66397593 CGAGGAAAA-CTAATGTGTCAGATTAGTCGGCTGCTTCATTTTTACAACTATATTTGTCGAGGT-
390 CGAGGAAAAGCTAATGTGTCAGATTAGTCGGCTGCTTCATTTTTACAACTATATTTGTCGAGGTA
66397656 AGTTTGTAGTATATAATATATAT-TTTGTTTCCTTATGATTATGTATATCAATTGTTAGTTAAAT
455 AGTTTGTAGTATATAATATATATGTTTGTTTCCTTATGATTATGTATATCAATTGTTAGTTAAAT
66397720 TATAATTAATGTGAAAATTTCATGTTTGCTTGTAAATTATTAAATGTTGGAATTAAGTACAAATG
520 TATAATTAATGTGAAAATTTCATGTTTGCTTGTAAATTATTAAATGTTGGAATTAAGTACAAATG
66397785 GAAAATG-ATATTTGGTCGTGG-AAATCTT-TGG
585 GAAAATGAATATTTGGTC-TGGCAAATCTTGTGG
66397816 TTCACAA-TTTGAAATGAATGTAACA-A-TTATATTATGTGTACAGATAATTAATTAAGTAAAAA
1 TTCACAATTTTGAAATG-ATGTAACAGATTTATATTATGTGTACAGATAATTAATTAAGTAAAAA
66397878 TCACTAAATTGAAAAAGGTGCAAAAATAGATTTCTATTAGGTAAAGGGGTCAATTTATTATGGAT
65 TCACTAAATT-AAAAAGGTGCAAAAATAGATTTCTATTAGGTAAAGGGGTCAATTTATTATGGAT
66397943 TATCAAA-TATGGACTTAAATGGTAAATGCACCAAATGAACTTTGAG-GGATGGTTTTGGGTGAT
129 TATCAAACTATGGACTTAAATGGTAAATGCACCAAATGAACTTTGAGTGGATGGTTTTGGGTGAT
66398006 TAAATGCATGAAATTTGA-TTTTTAAGGG-AAAATTGTAAATTTGTAAT-AAATGG-AA-TAAAA
194 TAAATGCATGAAATTTGATTTTTTAAGGGAAAAATTGTAAATTTGTAATCAAATGGAAATTAAAA
66398066 CAAACTAAAAGA-AAAATGTTATCATCTCCTCTAATTTGCTA-TTTGCAAACCGAATAACAGAGA
259 CAAACTAAAAGACAAAATGTTATCATCTCCTCTAATTTGCTATTTTGCAAACCGAATAACAGAGA
66398129 GGAAG-AGCTTCCGGTCATGGAGTTTTTACATGCATGATCAAGAAACGAACCAAACGGATCTAAA
324 GGAAGAAGCTTCCGGTCATGGAGTTTTTACATGCATGATCAAGAAACGAACCAAACGGATCTAAA
66398193 CCGAGG-AAAGCTAATGTGTCAGATTAGT-GGCTGCTTCATTTTTACAACTATATTTGTCGAGGT
389 CCGAGGAAAAGCTAATGTGTCAGATTAGTCGGCTGCTTCATTTTTACAACTATATTTGTCGAGGT
66398256 AAG-TTGTAGTATA-AATATATATGTTTGTTTCCTTATGATTATGTATATCAATTGTTAGTTAAA
454 AAGTTTGTAGTATATAATATATATGTTTGTTTCCTTATGATTATGTATATCAATTGTTAGTTAAA
66398319 TTATAATTAATGTGAAAATTTCAATGTTTGCTTGTAAATTATTAAATGTTGGAATTAAGTACAAA
519 TTATAATTAATGTGAAAATTTC-ATGTTTGCTTGTAAATTATTAAATGTTGGAATTAAGTACAAA
66398384 TGGAAAATGAATATTTGGTCAT-GC-AATCTTGTGG
583 TGGAAAATGAATATTTGGTC-TGGCAAATCTTGTGG
*
66398418 TTCACAATTTTGAAATGACTGTAACAGATTAATATTATGTGTACAGATAATTAATTAAGTAAAAA
1 TTCACAATTTTGAAATGA-TGTAACAGATTTATATTATGTGTACAGATAATTAATTAAGTAAAAA
*
66398483 TCACTAAATTGAAAAGGTGCAAAAATAGATTTCTATTAGGTAAA-GGGTCAA--T-TTA--G---
65 TCACTAAATTAAAAAGGTGCAAAAATAGATTTCTATTAGGTAAAGGGGTCAATTTATTATGGATT
*
66398539 -------TATGGACTTAAATTGTAAATGCACCAAATGAACTTTGAGTGGATGGTTTTGGGTGATT
130 ATCAAACTATGGACTTAAATGGTAAATGCACCAAATGAACTTTGAGTGGATGGTTTTGGGTGATT
*
66398597 AAATGCATG-AATTTGATTTTTT--GGGGAAAATTGTAAATTTGTAA-CTAAATGG-AA--AAAA
195 AAATGCATGAAATTTGATTTTTTAAGGGAAAAATTGTAAATTTGTAATC-AAATGGAAATTAAAA
*
66398655 CAAACTAACAGACAAAATGTTATCATCTCCTCTAATTTGCTATTTTGCAAACCG-ATAACAGAGA
259 CAAACTAAAAGACAAAATGTTATCATCTCCTCTAATTTGCTATTTTGCAAACCGAATAACAGAGA
* * *
66398719 GGAAGAAGCTGT-CGGTCATGTAG-TTTTACATGCATGATCCAGAAATGAACCAAACGGATCTAA
324 GGAAGAAGCT-TCCGGTCATGGAGTTTTTACATGCATGATCAAGAAACGAACCAAACGGATCTAA
* * *
66398782 ACTGAGG-AAAGCTATTG-GTCAGATTAGTCGGCTGCTTCATTTTTAGAACTATA-TTGTCGAGG
388 ACCGAGGAAAAGCTAATGTGTCAGATTAGTCGGCTGCTTCATTTTTACAACTATATTTGTCGAGG
* * * *
66398844 -AAGTTTGTAG--TAT-ATATATATG-TTGATTCCTTTTGATTATGTACATCAATAGTTAGTTAA
453 TAAGTTTGTAGTATATAATATATATGTTTGTTTCCTTATGATTATGTATATCAATTGTTAGTTAA
* *
66398904 ATTAT-ATTAATGTTAAAATTTCATTGTTTGCTTGT-AATTATTAAATGTTGGAAGTAAGTACAA
518 ATTATAATTAATGTGAAAATTTCA-TGTTTGCTTGTAAATTATTAAATGTTGGAATTAAGTACAA
*
66398967 ATGGAAAATGAATATTTGGTCGTGGTAAATCTTGTGG
582 ATGGAAAATGAATATTTGGTC-TGGCAAATCTTGTGG
* *
66399004 CTCACAATTTTGAAATGAATGTAA-AGATTTATATTATGTGTACAAATAATTAATTAAGTAAAAA
1 TTCACAATTTTGAAATG-ATGTAACAGATTTATATTATGTGTACAGATAATTAATTAAGTAAAAA
* * ** * *
66399068 TCAGTAAATTGTAAAAGCAGCCAAAATAGATTTCTATTAGGTAAAGGGGCCAATTTATTATGGAT
65 TCACTAAATT-AAAAAGGTGCAAAAATAGATTTCTATTAGGTAAAGGGGTCAATTTATTATGGAT
*
66399133 TATCAAACTAATGGACTTAAATGGTAAATGCACGAAATGAACTTTGAGTGGATGGTTTTGGGTGA
129 TATCAAACT-ATGGACTTAAATGGTAAATGCACCAAATGAACTTTGAGTGGATGGTTTTGGGTGA
*
66399198 TTAAATGCAAGAAATTTGATTTTTTAAGGGAAAAATTGTAAATTTGTAATCAAATGGAAATTAAA
193 TTAAATGCATGAAATTTGATTTTTTAAGGGAAAAATTGTAAATTTGTAATCAAATGGAAATTAAA
66399263 ACAAACTAAAAGACAAAAATGTTATCAT
258 ACAAACTAAAAGAC-AAAATGTTATCAT
66399291 TCGGATGACA
Statistics
Matches: 4260, Mismatches: 58, Indels: 311
0.92 0.01 0.07
Matches are distributed among these distances:
577 4 0.00
578 4 0.00
579 3 0.00
580 3 0.00
581 23 0.01
582 3 0.00
583 4 0.00
584 83 0.02
585 149 0.03
586 132 0.03
587 79 0.02
588 150 0.04
589 366 0.09
590 313 0.07
591 161 0.04
592 12 0.00
593 69 0.02
594 53 0.01
595 11 0.00
596 25 0.01
597 33 0.01
598 45 0.01
599 46 0.01
600 136 0.03
601 104 0.02
602 170 0.04
603 217 0.05
604 143 0.03
605 65 0.02
606 163 0.04
607 234 0.05
608 380 0.09
609 302 0.07
610 198 0.05
611 96 0.02
612 6 0.00
613 31 0.01
614 121 0.03
615 73 0.02
616 50 0.01
ACGTcount: A:0.37, C:0.10, G:0.18, T:0.35
Consensus pattern (617 bp):
TTCACAATTTTGAAATGATGTAACAGATTTATATTATGTGTACAGATAATTAATTAAGTAAAAAT
CACTAAATTAAAAAGGTGCAAAAATAGATTTCTATTAGGTAAAGGGGTCAATTTATTATGGATTA
TCAAACTATGGACTTAAATGGTAAATGCACCAAATGAACTTTGAGTGGATGGTTTTGGGTGATTA
AATGCATGAAATTTGATTTTTTAAGGGAAAAATTGTAAATTTGTAATCAAATGGAAATTAAAACA
AACTAAAAGACAAAATGTTATCATCTCCTCTAATTTGCTATTTTGCAAACCGAATAACAGAGAGG
AAGAAGCTTCCGGTCATGGAGTTTTTACATGCATGATCAAGAAACGAACCAAACGGATCTAAACC
GAGGAAAAGCTAATGTGTCAGATTAGTCGGCTGCTTCATTTTTACAACTATATTTGTCGAGGTAA
GTTTGTAGTATATAATATATATGTTTGTTTCCTTATGATTATGTATATCAATTGTTAGTTAAATT
ATAATTAATGTGAAAATTTCATGTTTGCTTGTAAATTATTAAATGTTGGAATTAAGTACAAATGG
AAAATGAATATTTGGTCTGGCAAATCTTGTGG
Found at i:66400915 original size:40 final size:40
Alignment explanation
Indices: 66400779--66400961 Score: 192
Period size: 40 Copynumber: 4.6 Consensus size: 40
66400769 TTGAATGCTG
* * * * *
66400779 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGC-GAGTTACTAAA
* * * *
66400819 TCCGGACTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAA
* *
66400859 T-CGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* *
66400898 TCCGGGTTAAGTCCCGAAGGCATTCGTGTGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* *
66400938 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
66400962 TGAACGAGGA
Statistics
Matches: 122, Mismatches: 17, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
38 1 0.01
39 31 0.25
40 82 0.67
41 8 0.07
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
Found at i:66405331 original size:42 final size:42
Alignment explanation
Indices: 66405271--66405428 Score: 174
Period size: 42 Copynumber: 3.7 Consensus size: 42
66405261 TAGGGTTATG
* * **
66405271 TGTGATTTCATTTGAGACCATATCTGGGATATGAAATCGATA
1 TGTGATTTCATGTAAGACCATATCTGGGATATGGCATCGATA
*
66405313 TGTGATTTCATGTAAGACCATGA-CTGGGACATGGCATCGATA
1 TGTGATTTCATGTAAGACCAT-ATCTGGGATATGGCATCGATA
* ** * * *
66405355 TGGGACATCATGTAAGACCATACCTGGGCTATTGGCTTCGATA
1 TGTGATTTCATGTAAGACCATATCTGGGATA-TGGCATCGATA
**
66405398 TGTGATCCCATGTAAGACCATATCTGGGATA
1 TGTGATTTCATGTAAGACCATATCTGGGATA
66405429 GAGCATTGTC
Statistics
Matches: 96, Mismatches: 17, Indels: 5
0.81 0.14 0.04
Matches are distributed among these distances:
41 1 0.01
42 59 0.61
43 36 0.38
ACGTcount: A:0.28, C:0.17, G:0.24, T:0.30
Consensus pattern (42 bp):
TGTGATTTCATGTAAGACCATATCTGGGATATGGCATCGATA
Found at i:66408050 original size:27 final size:27
Alignment explanation
Indices: 66408001--66408115 Score: 124
Period size: 27 Copynumber: 4.3 Consensus size: 27
66407991 TGGAGGAAGC
* *
66408001 GTTCTGGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTCTACCACAAATATCT
* * * *
66408028 ATTCTGGTGGCTCTACGATAAATATTT
1 GTTCTGGTGGCTCTACCACAAATATCT
*
66408055 GTTCTGGTGGCTCAACCACAAATATCT
1 GTTCTGGTGGCTCTACCACAAATATCT
* **
66408082 GTATCTGGTGACTCTGTCAC-AATATCT
1 GT-TCTGGTGGCTCTACCACAAATATCT
66408109 GTTCTGG
1 GTTCTGG
66408116 CAGCCATGCT
Statistics
Matches: 72, Mismatches: 15, Indels: 3
0.80 0.17 0.03
Matches are distributed among these distances:
26 5 0.07
27 54 0.75
28 13 0.18
ACGTcount: A:0.23, C:0.21, G:0.21, T:0.36
Consensus pattern (27 bp):
GTTCTGGTGGCTCTACCACAAATATCT
Found at i:66410365 original size:50 final size:49
Alignment explanation
Indices: 66410242--66410436 Score: 214
Period size: 49 Copynumber: 3.9 Consensus size: 49
66410232 ATCTATTGTG
* * * *
66410242 AGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTAT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTA-CC--AGACTAT
* * * ** *
66410294 -GATCACATGTGTAGTATTAAGTGTAGGCTACTACGTGTATTAGA-TGGT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACT-AT
66410342 GAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTAT
1 -AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTAT
* * *
66410392 TGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGA
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA
66410437 TAGCTTCAGC
Statistics
Matches: 120, Mismatches: 19, Indels: 11
0.80 0.13 0.07
Matches are distributed among these distances:
47 1 0.01
48 3 0.03
49 42 0.35
50 40 0.33
51 34 0.28
ACGTcount: A:0.28, C:0.18, G:0.26, T:0.28
Consensus pattern (49 bp):
AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTAT
Found at i:66415789 original size:28 final size:28
Alignment explanation
Indices: 66415757--66415821 Score: 103
Period size: 28 Copynumber: 2.3 Consensus size: 28
66415747 ATTTACTAGA
*
66415757 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATGACCATT
* *
66415785 ATACCCCTATGTATGCTAAATGACCTTT
1 ATACCCCTATGTATGCAAAATGACCATT
66415813 ATACCCCTA
1 ATACCCCTA
66415822 GGGTTAATTT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.32, C:0.28, G:0.08, T:0.32
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATGACCATT
Found at i:66415968 original size:28 final size:29
Alignment explanation
Indices: 66415927--66415989 Score: 94
Period size: 28 Copynumber: 2.2 Consensus size: 29
66415917 AGGAAGCGTC
*
66415927 CTGGTGGCTATGCCACAAATTATCTGT-T
1 CTGGTGGCTATGCCACAAAATATCTGTAT
66415955 CTGGTGGC-ACTGCCACAAAATATCTGTAT
1 CTGGTGGCTA-TGCCACAAAATATCTGTAT
66415984 CTGGTG
1 CTGGTG
66415990 ACTCTGTCAC
Statistics
Matches: 32, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
27 1 0.03
28 24 0.75
29 7 0.22
ACGTcount: A:0.22, C:0.22, G:0.24, T:0.32
Consensus pattern (29 bp):
CTGGTGGCTATGCCACAAAATATCTGTAT
Found at i:66416000 original size:29 final size:28
Alignment explanation
Indices: 66415937--66416000 Score: 83
Period size: 28 Copynumber: 2.2 Consensus size: 28
66415927 CTGGTGGCTA
* *
66415937 TGCCACAAATTATCTGTTCTGGTGGCAC
1 TGCCACAAAATATCTGTTCTGGTGACAC
*
66415965 TGCCACAAAATATCTGTATCTGGTGACTC
1 TGCCACAAAATATCTGT-TCTGGTGACAC
*
66415994 TGTCACA
1 TGCCACA
66416001 TTTTCTGTAT
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
28 16 0.52
29 15 0.48
ACGTcount: A:0.25, C:0.25, G:0.19, T:0.31
Consensus pattern (28 bp):
TGCCACAAAATATCTGTTCTGGTGACAC
Found at i:66416475 original size:19 final size:19
Alignment explanation
Indices: 66416453--66416491 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
66416443 TTTTAATAAT
* *
66416453 TTTTATGGTTTTGTTTTAC
1 TTTTATGATTTTATTTTAC
*
66416472 TTTTATTATTTTATTTTAC
1 TTTTATGATTTTATTTTAC
66416491 T
1 T
66416492 ATGATGAAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.15, C:0.05, G:0.08, T:0.72
Consensus pattern (19 bp):
TTTTATGATTTTATTTTAC
Found at i:66435613 original size:119 final size:120
Alignment explanation
Indices: 66435405--66435629 Score: 287
Period size: 119 Copynumber: 1.9 Consensus size: 120
66435395 GCTACTCGTT
**
66435405 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCAG
1 CAAATGCCTTCGGGACATAGCCCGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCAG
* *
66435470 ATTTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
66 ATATAGTAACTAGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * **
66435525 CAAATGCCTTCGGG-CTTAGCCCGAA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCC
1 CAAATGCCTTCGGGACATAGCCCGAATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
* * * *
66435587 GGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
64 AGATATAGTAAC-TAGCACAAATGCCTTCGGGACTTAACCCGGA
66435630 CATCATTCAA
Statistics
Matches: 90, Mismatches: 12, Indels: 7
0.83 0.11 0.06
Matches are distributed among these distances:
118 4 0.04
119 64 0.71
120 22 0.24
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (120 bp):
CAAATGCCTTCGGGACATAGCCCGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCAG
ATATAGTAACTAGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:66435629 original size:40 final size:40
Alignment explanation
Indices: 66435386--66435629 Score: 282
Period size: 40 Copynumber: 6.1 Consensus size: 40
66435376 CGGAATTTAA
** *
66435386 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
66435426 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
66435466 CCAGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
66435506 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
66435545 CC-GAAATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
66435585 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
66435625 CCGGA
1 CCGGA
66435630 CATCATTCAA
Statistics
Matches: 177, Mismatches: 20, Indels: 14
0.84 0.09 0.07
Matches are distributed among these distances:
38 4 0.02
39 30 0.17
40 129 0.73
41 14 0.08
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:66438665 original size:17 final size:17
Alignment explanation
Indices: 66438643--66438678 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
66438633 TTGCTACAAG
66438643 ATGGACTTGCGGCAACA
1 ATGGACTTGCGGCAACA
66438660 ATGGACTTGCGGCAACA
1 ATGGACTTGCGGCAACA
66438677 AT
1 AT
66438679 AAAGAGGGTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.31, C:0.22, G:0.28, T:0.19
Consensus pattern (17 bp):
ATGGACTTGCGGCAACA
Found at i:66439720 original size:13 final size:13
Alignment explanation
Indices: 66439702--66439727 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
66439692 TAGTGAGCTT
66439702 TATTTTCCAATTC
1 TATTTTCCAATTC
66439715 TATTTTCCAATTC
1 TATTTTCCAATTC
66439728 AAGTGGCCAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.23, G:0.00, T:0.54
Consensus pattern (13 bp):
TATTTTCCAATTC
Found at i:66445351 original size:35 final size:35
Alignment explanation
Indices: 66445312--66445381 Score: 122
Period size: 35 Copynumber: 2.0 Consensus size: 35
66445302 TTTCATGAGT
66445312 TTGGAAACCAAATTAAGTGATTTCAGAGTCGTTTA
1 TTGGAAACCAAATTAAGTGATTTCAGAGTCGTTTA
* *
66445347 TTGGAAACCAAATTAAGTGATTTTAGAGTCTTTTA
1 TTGGAAACCAAATTAAGTGATTTCAGAGTCGTTTA
66445382 CTTAGTGAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.34, C:0.10, G:0.19, T:0.37
Consensus pattern (35 bp):
TTGGAAACCAAATTAAGTGATTTCAGAGTCGTTTA
Found at i:66448719 original size:16 final size:15
Alignment explanation
Indices: 66448684--66448718 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
66448674 ATTGCAAAAG
*
66448684 AAAAATCGAATATTA
1 AAAAATCGAACATTA
*
66448699 AAAAATTGAACATTA
1 AAAAATCGAACATTA
66448714 AAAAA
1 AAAAA
66448719 AATTAATTAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.66, C:0.06, G:0.06, T:0.23
Consensus pattern (15 bp):
AAAAATCGAACATTA
Found at i:66450413 original size:29 final size:29
Alignment explanation
Indices: 66450376--66450441 Score: 123
Period size: 29 Copynumber: 2.3 Consensus size: 29
66450366 CATGGCAAGG
66450376 ACACGGCCATGTCCTTGCCCATGTGACTC
1 ACACGGCCATGTCCTTGCCCATGTGACTC
*
66450405 ACACTGCCATGTCCTTGCCCATGTGACTC
1 ACACGGCCATGTCCTTGCCCATGTGACTC
66450434 ACACGGCC
1 ACACGGCC
66450442 TGGCCATATT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
29 35 1.00
ACGTcount: A:0.18, C:0.39, G:0.20, T:0.23
Consensus pattern (29 bp):
ACACGGCCATGTCCTTGCCCATGTGACTC
Found at i:66451154 original size:20 final size:20
Alignment explanation
Indices: 66451131--66451188 Score: 52
Period size: 18 Copynumber: 3.0 Consensus size: 20
66451121 ACAGAAAAAT
66451131 GAAAAAGGAGGAAAAAGAAA
1 GAAAAAGGAGGAAAAAGAAA
*
66451151 G-AAAATG-GGAAAAA-AACA
1 GAAAAAGGAGGAAAAAGAA-A
*
66451169 -AAAAAGAAGGGAAAAAGAAA
1 GAAAAAGGA-GGAAAAAGAAA
66451189 TTGACGTTAA
Statistics
Matches: 30, Mismatches: 3, Indels: 10
0.70 0.07 0.23
Matches are distributed among these distances:
17 2 0.07
18 12 0.40
19 5 0.17
20 9 0.30
21 2 0.07
ACGTcount: A:0.71, C:0.02, G:0.26, T:0.02
Consensus pattern (20 bp):
GAAAAAGGAGGAAAAAGAAA
Found at i:66451161 original size:18 final size:19
Alignment explanation
Indices: 66451140--66451188 Score: 55
Period size: 20 Copynumber: 2.6 Consensus size: 19
66451130 TGAAAAAGGA
* *
66451140 GGAAAAAGAAAGAAA-ATG
1 GGAAAAAGAAAAAAAGAAG
*
66451158 GGAAAAAAACAAAAAAGAAG
1 GGAAAAAGA-AAAAAAGAAG
66451178 GGAAAAAGAAA
1 GGAAAAAGAAA
66451189 TTGACGTTAA
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
18 8 0.32
19 7 0.28
20 10 0.40
ACGTcount: A:0.71, C:0.02, G:0.24, T:0.02
Consensus pattern (19 bp):
GGAAAAAGAAAAAAAGAAG
Found at i:66452617 original size:14 final size:16
Alignment explanation
Indices: 66452587--66452621 Score: 56
Period size: 14 Copynumber: 2.3 Consensus size: 16
66452577 TATATAATAA
66452587 AAATAAATTTGATTTT
1 AAATAAATTTGATTTT
66452603 AAATAAA-TT-ATTTT
1 AAATAAATTTGATTTT
66452617 AAATA
1 AAATA
66452622 TTTTACTTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 10 0.53
15 2 0.11
16 7 0.37
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.46
Consensus pattern (16 bp):
AAATAAATTTGATTTT
Found at i:66455347 original size:40 final size:40
Alignment explanation
Indices: 66455249--66455417 Score: 225
Period size: 39 Copynumber: 4.3 Consensus size: 40
66455239 TCCTCGTTCA
* * ** *
66455249 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
66455288 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
*
66455328 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
* * * *
66455368 AATGCCTTC-GGACTTAACCCGGATTTAATATCTCGCACA
1 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
*
66455407 AAGGCCTTCGG
1 AATGCCTTCGG
66455418 ATCTTAGTCC
Statistics
Matches: 118, Mismatches: 10, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
39 69 0.58
40 49 0.42
ACGTcount: A:0.27, C:0.29, G:0.20, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
Found at i:66455350 original size:79 final size:79
Alignment explanation
Indices: 66455247--66455417 Score: 227
Period size: 79 Copynumber: 2.2 Consensus size: 79
66455237 GCTCCTCGTT
* * **
66455247 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-AATGCCTTCGGGACATAACCCGG
1 CAAATGCCTTCGGGACATAACCCGGATTTAACAACTCACACGAATGCCTTC-GGACATAACCCGG
66455311 ATTTAACAACTCGCA
65 ATTTAACAACTCGCA
* * * *
66455326 CGAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACGAATGCCTTCGGACTTAACCCGGA
1 CAAATGCCTTCGGGACATAACCCGGATTTAACAACTCACACGAATGCCTTCGGACATAACCCGGA
* *
66455391 TTTAATATCTCGCA
66 TTTAACAACTCGCA
*
66455405 CAAAGGCCTTCGG
1 CAAATGCCTTCGG
66455418 ATCTTAGTCC
Statistics
Matches: 79, Mismatches: 12, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
79 70 0.89
80 9 0.11
ACGTcount: A:0.27, C:0.29, G:0.20, T:0.23
Consensus pattern (79 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAACAACTCACACGAATGCCTTCGGACATAACCCGGA
TTTAACAACTCGCA
Found at i:66455418 original size:39 final size:40
Alignment explanation
Indices: 66455247--66455470 Score: 224
Period size: 40 Copynumber: 5.7 Consensus size: 40
66455237 GCTCCTCGTT
* * * ** *
66455247 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCA
*
66455287 C-AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCA
*
66455326 CGAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCA
* * *
66455366 CGAATGCCTTC-GGACTTAACCCGGATTTAATATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCA
* ** * * *
66455405 CAAAGGCCTTC-GGATCTTAGTCCGGATATATTC-ACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTA-ACAAC-TCGCA
*
66455446 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
66455471 CAGCATTCAA
Statistics
Matches: 161, Mismatches: 18, Indels: 10
0.85 0.10 0.05
Matches are distributed among these distances:
39 72 0.45
40 78 0.48
41 11 0.07
ACGTcount: A:0.27, C:0.29, G:0.20, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCA
Found at i:66455454 original size:79 final size:79
Alignment explanation
Indices: 66455285--66455470 Score: 207
Period size: 79 Copynumber: 2.3 Consensus size: 79
66455275 TAGTAACTCA
* * *
66455285 CACAATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACGAATGCCTTCGGGACTTAACCCG
1 CACAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACAAAGGCCTTCGGGACTTAACCCG
* *
66455350 GATTTAACAACTCG
66 GATATAACAACTAG
* * **
66455364 CACGAATGCCTTC-GGACTTAACCCGGATTTAATATCTCGCACAAAGGCCTTC-GGATCTTAGTC
1 CAC-AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACAAAGGCCTTCGGGA-CTTAACC
*
66455427 CGGATATATTC-ACTTAG
64 CGGATATA-ACAAC-TAG
* *
66455444 CACAAAGCCTTCGGGACTTAGCCCGGA
1 CACAATGCCTTCGGGACTTAACCCGGA
66455471 CAGCATTCAA
Statistics
Matches: 90, Mismatches: 12, Indels: 9
0.81 0.11 0.08
Matches are distributed among these distances:
78 3 0.03
79 59 0.66
80 28 0.31
ACGTcount: A:0.27, C:0.29, G:0.20, T:0.24
Consensus pattern (79 bp):
CACAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACAAAGGCCTTCGGGACTTAACCCG
GATATAACAACTAG
Found at i:66455479 original size:41 final size:41
Alignment explanation
Indices: 66455402--66455479 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
66455392 TTAATATCTC
* * *
66455402 GCACAAAGGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
66455443 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAAGGCCTTC-GGATCTTAGCCCGGACA-CATTCA
66455480 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (41 bp):
GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:66463286 original size:80 final size:80
Alignment explanation
Indices: 66463143--66463326 Score: 203
Period size: 80 Copynumber: 2.3 Consensus size: 80
66463133 TCCTCGTTCA
* * * *
66463143 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACGAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACACAAAGGCCTTCGGGACTTAACCCGGAT
* *
66463208 TTAAT-AAC-TCGCAC
66 AT-ATCAACTTAGCAC
* * * **
66463222 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTC-GGATCTTAGTCCGG
1 -AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACACAAAGGCCTTCGGGA-CTTAACCCGG
*
66463286 ATATATCCACTTAGCAC
64 ATATATCAACTTAGCAC
*
66463303 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
66463327 CAGCATTCAA
Statistics
Matches: 87, Mismatches: 14, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
79 5 0.06
80 77 0.89
81 5 0.06
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (80 bp):
AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACACAAAGGCCTTCGGGACTTAACCCGGAT
ATATCAACTTAGCAC
Found at i:66463287 original size:40 final size:40
Alignment explanation
Indices: 66463143--66463273 Score: 190
Period size: 40 Copynumber: 3.3 Consensus size: 40
66463133 TCCTCGTTCA
* * * *
66463143 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACG
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACG
*
66463183 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACG
* *
66463223 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACG
*
66463263 AAGGCCTTCGG
1 AATGCCTTCGG
66463274 ATCTTAGTCC
Statistics
Matches: 82, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 82 1.00
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACG
Found at i:66468569 original size:43 final size:43
Alignment explanation
Indices: 66468521--66468683 Score: 172
Period size: 43 Copynumber: 3.8 Consensus size: 43
66468511 ATCAAGATGT
*
66468521 GATTACATGTAAGACCATGTCTGGGACATTGGCATTG-TATTC
1 GATTACATGTAAGACCATGTCTGGGACATTGGCATCGATATTC
* * *
66468563 AGATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTTAATC
1 -GATTACATGTAAGACCATGTCTGGGACATTGGCATCGATATTC
* * * *
66468607 GATTTCGTGTAAGACCCTGTCTGGGACAGTGGCATCGATATGT-
1 GATTACATGTAAGACCATGTCTGGGACATTGGCATCGATAT-TC
* * *
66468650 G-TTGACATGTAAGACTATATCTGGGATA-TGGCAT
1 GATT-ACATGTAAGACCATGTCTGGGACATTGGCAT
66468684 TGTACGAGCT
Statistics
Matches: 103, Mismatches: 14, Indels: 7
0.83 0.11 0.06
Matches are distributed among these distances:
42 8 0.08
43 90 0.87
44 5 0.05
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.31
Consensus pattern (43 bp):
GATTACATGTAAGACCATGTCTGGGACATTGGCATCGATATTC
Found at i:66495632 original size:12 final size:13
Alignment explanation
Indices: 66495615--66495646 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
66495605 ATATCACATT
66495615 TCAAAAC-ATGCA
1 TCAAAACTATGCA
66495627 TCAAAACTATGCA
1 TCAAAACTATGCA
66495640 -CAAAACT
1 TCAAAACT
66495647 TAACATTTGC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 14 0.74
13 5 0.26
ACGTcount: A:0.50, C:0.25, G:0.06, T:0.19
Consensus pattern (13 bp):
TCAAAACTATGCA
Found at i:66497813 original size:12 final size:13
Alignment explanation
Indices: 66497796--66497827 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
66497786 ATATCACATT
66497796 TCAAAAC-ATGCA
1 TCAAAACTATGCA
66497808 TCAAAACTATGCA
1 TCAAAACTATGCA
66497821 -CAAAACT
1 TCAAAACT
66497828 TAACATTTGC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 14 0.74
13 5 0.26
ACGTcount: A:0.50, C:0.25, G:0.06, T:0.19
Consensus pattern (13 bp):
TCAAAACTATGCA
Found at i:66502392 original size:27 final size:27
Alignment explanation
Indices: 66502294--66502387 Score: 136
Period size: 27 Copynumber: 3.5 Consensus size: 27
66502284 TTCTTGGTGC
66502294 CCAAAATACCCCTAGTTTGTAAAATTA
1 CCAAAATACCCCTAGTTTGTAAAATTA
* *
66502321 CCAAAATACCACTAGTTTGTGAAATTA
1 CCAAAATACCCCTAGTTTGTAAAATTA
* *
66502348 CCGAAATA-CCCTCAATTTGTAAAATTA
1 CCAAAATACCCCT-AGTTTGTAAAATTA
66502375 CCAAAATACCCCT
1 CCAAAATACCCCT
66502388 GATTTACAAA
Statistics
Matches: 58, Mismatches: 7, Indels: 3
0.85 0.10 0.04
Matches are distributed among these distances:
26 3 0.05
27 51 0.88
28 4 0.07
ACGTcount: A:0.40, C:0.24, G:0.07, T:0.28
Consensus pattern (27 bp):
CCAAAATACCCCTAGTTTGTAAAATTA
Found at i:66502408 original size:54 final size:53
Alignment explanation
Indices: 66502309--66502490 Score: 150
Period size: 54 Copynumber: 3.3 Consensus size: 53
66502299 ATACCCCTAG
** *
66502309 TTTGTAAAATTACCAAAATACCACT-AGTTTGTGAAATTACCGAAATACCCTCAA
1 TTTGTAAAATTACCAAAATACCACTGA-TTT-ACAAATTACAGAAATACCCTCAA
* * *
66502363 TTTGTAAAATTACCAAAATACCCCTGATTTACAAAGTTACAGAAATACCCTTGAC
1 TTTGTAAAATTACCAAAATACCACTGATTTACAAA-TTACAGAAATACCC-TCAA
* *** * * * * *
66502418 TTTCTAAAAATTATGGAAATACCATTGGTTTACAAAATTACTGAAATACCCTTAG
1 TTTGT-AAAATTACCAAAATACCACTGATTTAC-AAATTACAGAAATACCCTCAA
* *
66502473 TTTGTAGATTTACCAAAA
1 TTTGTAAAATTACCAAAA
66502491 CACCCTTGTA
Statistics
Matches: 101, Mismatches: 22, Indels: 10
0.76 0.17 0.08
Matches are distributed among these distances:
53 3 0.03
54 48 0.48
55 13 0.13
56 34 0.34
57 3 0.03
ACGTcount: A:0.40, C:0.18, G:0.10, T:0.32
Consensus pattern (53 bp):
TTTGTAAAATTACCAAAATACCACTGATTTACAAATTACAGAAATACCCTCAA
Found at i:66502475 original size:27 final size:27
Alignment explanation
Indices: 66502297--66502476 Score: 114
Period size: 27 Copynumber: 6.6 Consensus size: 27
66502287 TTGGTGCCCA
* * *
66502297 AAATACCCCTAGTTTGTAAAATTACCA
1 AAATACCCTTAGTTTGCAAAATTACCG
**
66502324 AAATACCAC-TAGTTTGTGAAATTACCG
1 AAATACC-CTTAGTTTGCAAAATTACCG
* * * *
66502351 AAATACCCTCAATTTGTAAAATTACCA
1 AAATACCCTTAGTTTGCAAAATTACCG
* * * *
66502378 AAATACCCCT-GATTTACAAAGTTACAG
1 AAATACCCTTAG-TTTGCAAAATTACCG
* **
66502405 AAATACCCTTGACTTT-CTAAAAATTATGG
1 AAATACCCTT-AGTTTGC--AAAATTACCG
* * * *
66502434 AAATACCATTGGTTTACAAAATTACTG
1 AAATACCCTTAGTTTGCAAAATTACCG
66502461 AAATACCCTTAGTTTG
1 AAATACCCTTAGTTTG
66502477 TAGATTTACC
Statistics
Matches: 118, Mismatches: 27, Indels: 16
0.73 0.17 0.10
Matches are distributed among these distances:
26 1 0.01
27 93 0.79
28 7 0.06
29 17 0.14
ACGTcount: A:0.39, C:0.19, G:0.10, T:0.31
Consensus pattern (27 bp):
AAATACCCTTAGTTTGCAAAATTACCG
Found at i:66502558 original size:27 final size:27
Alignment explanation
Indices: 66502528--66502616 Score: 99
Period size: 27 Copynumber: 3.3 Consensus size: 27
66502518 TACCCCTATT
66502528 AGGTAAAAAGACCGTAAAGCCCCTGTA
1 AGGTAAAAAGACCGTAAAGCCCCTGTA
* *
66502555 AGGTAAAGAGACCGTAAAGCCCTTGTA
1 AGGTAAAAAGACCGTAAAGCCCCTGTA
* ** *
66502582 GGGTAAAGTGACCGTAATA-CCTCTGTA
1 AGGTAAAAAGACCGTAA-AGCCCCTGTA
*
66502609 TGGTAAAA
1 AGGTAAAA
66502617 TGAAGAATAT
Statistics
Matches: 53, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
27 52 0.98
28 1 0.02
ACGTcount: A:0.37, C:0.18, G:0.25, T:0.20
Consensus pattern (27 bp):
AGGTAAAAAGACCGTAAAGCCCCTGTA
Found at i:66503460 original size:26 final size:26
Alignment explanation
Indices: 66503424--66503588 Score: 242
Period size: 26 Copynumber: 6.4 Consensus size: 26
66503414 GAGGAAGTGC
*
66503424 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATCG
* *
66503450 AAAAGGGCTTATTCCCTAGTTTATCG
1 AAAAGGGCTTATGCCCCAGTTTATCG
*
66503476 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATCG
* *
66503502 AAAAGGGCTTATGCCTCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATCG
*
66503528 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATCG
* *
66503554 AAAAGGGCTT-TGACCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATCG
66503579 AAAAGGGCTT
1 AAAAGGGCTT
66503589 TCCCTAGTTA
Statistics
Matches: 124, Mismatches: 15, Indels: 1
0.89 0.11 0.01
Matches are distributed among these distances:
25 22 0.18
26 102 0.82
ACGTcount: A:0.28, C:0.20, G:0.23, T:0.29
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATCG
Found at i:66503801 original size:42 final size:42
Alignment explanation
Indices: 66503742--66503833 Score: 150
Period size: 42 Copynumber: 2.2 Consensus size: 42
66503732 TAGTCTCCCC
* *
66503742 AAATGGGCTTGCATACATTCATTCG-TATTTCATGTGATATTG
1 AAATGGGCTTGCATACATTCATT-GACATTACATGTGATATTG
66503784 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
66503826 AAATGGGC
1 AAATGGGC
66503834 CTAAGGGACA
Statistics
Matches: 47, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
41 1 0.02
42 46 0.98
ACGTcount: A:0.29, C:0.14, G:0.21, T:0.36
Consensus pattern (42 bp):
AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
Found at i:66503895 original size:31 final size:31
Alignment explanation
Indices: 66503857--66503926 Score: 104
Period size: 31 Copynumber: 2.3 Consensus size: 31
66503847 CGTTTACAGT
66503857 AAAGGCTTCAGCCCAATGATATGATTTATGA
1 AAAGGCTTCAGCCCAATGATATGATTTATGA
* * * *
66503888 AAAGGCTTCGGCCTAGTGATATGGTTTATGA
1 AAAGGCTTCAGCCCAATGATATGATTTATGA
66503919 AAAGGCTT
1 AAAGGCTT
66503927 TGGCCCAGTA
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 35 1.00
ACGTcount: A:0.31, C:0.14, G:0.24, T:0.30
Consensus pattern (31 bp):
AAAGGCTTCAGCCCAATGATATGATTTATGA
Found at i:66504042 original size:133 final size:133
Alignment explanation
Indices: 66503875--66504142 Score: 518
Period size: 133 Copynumber: 2.0 Consensus size: 133
66503865 CAGCCCAATG
* *
66503875 ATATGATTTATGAAAAGGCTTCGGCCTAGTGATATGGTTTATGAAAAGGCTTTGGCCCAGTAACC
1 ATATGATTTATGAAAAGGCTTCGGCCTAGTGATATGATTTATGAAAAGGCTTCGGCCCAGTAACC
66503940 GTTAAACAAAAGGCTTCGGCCCAGTATATGCCAAGACTAAATAGGGCTTTGGCCCAGATTGTACT
66 GTTAAACAAAAGGCTTCGGCCCAGTATATGCCAAGACTAAATAGGGCTTTGGCCCAGATTGTACT
66504005 GAC
131 GAC
66504008 ATATGATTTATGAAAAGGCTTCGGCCTAGTGATATGATTTATGAAAAGGCTTCGGCCCAGTAACC
1 ATATGATTTATGAAAAGGCTTCGGCCTAGTGATATGATTTATGAAAAGGCTTCGGCCCAGTAACC
66504073 GTTAAACAAAAGGCTTCGGCCCAGTATATGCCAAGACTAAATAGGGCTTTGGCCCAGATTGTACT
66 GTTAAACAAAAGGCTTCGGCCCAGTATATGCCAAGACTAAATAGGGCTTTGGCCCAGATTGTACT
66504138 GAC
131 GAC
66504141 AT
1 AT
66504143 TGTGTTTTCA
Statistics
Matches: 133, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
133 133 1.00
ACGTcount: A:0.31, C:0.19, G:0.24, T:0.27
Consensus pattern (133 bp):
ATATGATTTATGAAAAGGCTTCGGCCTAGTGATATGATTTATGAAAAGGCTTCGGCCCAGTAACC
GTTAAACAAAAGGCTTCGGCCCAGTATATGCCAAGACTAAATAGGGCTTTGGCCCAGATTGTACT
GAC
Done.