Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100714657
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 3970000 characters in sequence are not A, C, G, or T
File 211 of 318
Found at i:66654509 original size:22 final size:24
Alignment explanation
Indices: 66654483--66654541 Score: 68
Period size: 25 Copynumber: 2.5 Consensus size: 24
66654473 TACATTTATC
66654483 TTATGTATATATCTT-A-ACTATA
1 TTATGTATATATCTTAACACTATA
* *
66654505 TTATGTATGTATTTTTAACACTATA
1 TTATGTATATA-TCTTAACACTATA
*
66654530 TTATGTACATAT
1 TTATGTATATAT
66654542 TTTTAATATT
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
22 10 0.33
23 3 0.10
24 2 0.07
25 15 0.50
ACGTcount: A:0.34, C:0.08, G:0.07, T:0.51
Consensus pattern (24 bp):
TTATGTATATATCTTAACACTATA
Found at i:66654531 original size:25 final size:25
Alignment explanation
Indices: 66654499--66654547 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 25
66654489 ATATATCTTA
**
66654499 ACTATATTATGTATGTATTTTTAAC
1 ACTATATTATGTACATATTTTTAAC
66654524 ACTATATTATGTACATATTTTTAA
1 ACTATATTATGTACATATTTTTAA
66654548 TATTATCACG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.35, C:0.08, G:0.06, T:0.51
Consensus pattern (25 bp):
ACTATATTATGTACATATTTTTAAC
Found at i:66654722 original size:16 final size:15
Alignment explanation
Indices: 66654698--66654745 Score: 69
Period size: 16 Copynumber: 3.1 Consensus size: 15
66654688 TAATTATTAT
*
66654698 TATTCTAATATTTTGA
1 TATTTTAATATTTT-A
66654714 TATTTTAATATTTTA
1 TATTTTAATATTTTA
66654729 TATTTTATATATTTTA
1 TATTTTA-ATATTTTA
66654745 T
1 T
66654746 TATTCACATT
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
15 8 0.27
16 22 0.73
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (15 bp):
TATTTTAATATTTTA
Found at i:66654733 original size:7 final size:8
Alignment explanation
Indices: 66654698--66654749 Score: 61
Period size: 8 Copynumber: 6.5 Consensus size: 8
66654688 TAATTATTAT
*
66654698 TATTCTAA
1 TATTTTAA
*
66654706 TATTTTGA
1 TATTTTAA
66654714 TATTTTAA
1 TATTTTAA
66654722 TATTTT-A
1 TATTTTAA
66654729 TATTTTATA
1 TATTTTA-A
*
66654738 TATTTTAT
1 TATTTTAA
66654746 TATT
1 TATT
66654750 CACATTATTA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
7 7 0.18
8 23 0.61
9 8 0.21
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (8 bp):
TATTTTAA
Found at i:66657041 original size:15 final size:15
Alignment explanation
Indices: 66657017--66657053 Score: 65
Period size: 15 Copynumber: 2.5 Consensus size: 15
66657007 AATAAGGTGT
*
66657017 TCACTCACCTCTCTC
1 TCACTTACCTCTCTC
66657032 TCACTTACCTCTCTC
1 TCACTTACCTCTCTC
66657047 TCACTTA
1 TCACTTA
66657054 ATGAGATTGT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.16, C:0.46, G:0.00, T:0.38
Consensus pattern (15 bp):
TCACTTACCTCTCTC
Found at i:66658120 original size:31 final size:33
Alignment explanation
Indices: 66658084--66658145 Score: 85
Period size: 31 Copynumber: 1.9 Consensus size: 33
66658074 ATAAAAAATG
*
66658084 TATAAA-ACTTTTAAATATT-A-AAATAATATAA
1 TATAAATA-TTTTAAAAATTAATAAATAATATAA
66658115 TATAAATATTTTAAAAATTAATAAATAATAT
1 TATAAATATTTTAAAAATTAATAAATAATAT
66658146 GTACGGGTCT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
31 16 0.59
32 2 0.07
33 9 0.33
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (33 bp):
TATAAATATTTTAAAAATTAATAAATAATATAA
Found at i:66659574 original size:18 final size:17
Alignment explanation
Indices: 66659529--66659576 Score: 51
Period size: 18 Copynumber: 2.6 Consensus size: 17
66659519 GGTCCACGTC
66659529 AAAACCAAAATACAAAAT
1 AAAA-CAAAATACAAAAT
* *
66659547 AAATATAAAATCCAAAAAT
1 AAA-ACAAAATAC-AAAAT
66659566 AAAACAAAATA
1 AAAACAAAATA
66659577 AATACTGTCC
Statistics
Matches: 24, Mismatches: 4, Indels: 4
0.75 0.12 0.12
Matches are distributed among these distances:
18 15 0.62
19 9 0.38
ACGTcount: A:0.73, C:0.12, G:0.00, T:0.15
Consensus pattern (17 bp):
AAAACAAAATACAAAAT
Found at i:66672140 original size:3 final size:3
Alignment explanation
Indices: 66672132--66672168 Score: 74
Period size: 3 Copynumber: 12.3 Consensus size: 3
66672122 TAGAAGTGTA
66672132 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
66672169 TAACAATCTC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:66677282 original size:63 final size:63
Alignment explanation
Indices: 66677170--66677293 Score: 196
Period size: 63 Copynumber: 2.0 Consensus size: 63
66677160 TTGAACTTTG
* * *
66677170 TTATTGTTAGTCTTTTCTCTACCATGATGATCAAGAAGTGGAAATTATGGATTGGAGGCTAGT
1 TTATTGTTAGTCCTTTCTCTACCATGATGATCAAGAAGTGAAAACTATGGATTGGAGGCTAGT
*
66677233 TTATTGTTAGTCCTTTCTCTACCATGATTATCAATG-AGTGAAAACTATGGATTGGAGGCTA
1 TTATTGTTAGTCCTTTCTCTACCATGATGATCAA-GAAGTGAAAACTATGGATTGGAGGCTA
66677294 ATTTGTTGCT
Statistics
Matches: 56, Mismatches: 4, Indels: 2
0.90 0.06 0.03
Matches are distributed among these distances:
63 55 0.98
64 1 0.02
ACGTcount: A:0.27, C:0.13, G:0.22, T:0.38
Consensus pattern (63 bp):
TTATTGTTAGTCCTTTCTCTACCATGATGATCAAGAAGTGAAAACTATGGATTGGAGGCTAGT
Found at i:66686441 original size:4 final size:4
Alignment explanation
Indices: 66686427--66686469 Score: 68
Period size: 4 Copynumber: 10.8 Consensus size: 4
66686417 CTAAAATCGC
* *
66686427 TATG AATG TATG TATA TATG TATG TATG TATG TATG TATG TAT
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TAT
66686470 TATTATTTTA
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
4 35 1.00
ACGTcount: A:0.30, C:0.00, G:0.21, T:0.49
Consensus pattern (4 bp):
TATG
Found at i:66694578 original size:13 final size:13
Alignment explanation
Indices: 66694560--66694585 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
66694550 GCTCGACAGG
66694560 GACACGCCCGTGT
1 GACACGCCCGTGT
66694573 GACACGCCCGTGT
1 GACACGCCCGTGT
66694586 ACGATTGCTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.38, G:0.31, T:0.15
Consensus pattern (13 bp):
GACACGCCCGTGT
Found at i:66695366 original size:18 final size:18
Alignment explanation
Indices: 66695340--66695374 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
66695330 TTGAGGTAGA
*
66695340 GATGAAGATGAAGATGAT
1 GATGAAGATGAACATGAT
*
66695358 GATGGAGATGAACATGA
1 GATGAAGATGAACATGA
66695375 GTACAAGAGT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.43, C:0.03, G:0.34, T:0.20
Consensus pattern (18 bp):
GATGAAGATGAACATGAT
Found at i:66700872 original size:96 final size:96
Alignment explanation
Indices: 66700680--66701375 Score: 1102
Period size: 96 Copynumber: 7.3 Consensus size: 96
66700670 CCCTTCGGGA
* * * * * * * *
66700680 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCGACTCGG-CTCTGTCAC--ATATATA
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT-TATCACATATATATA
*
66700742 CACTTTCACATTCATCACATCGGCTATTAGGC
65 CACTTTCACATTCATCACATCGGCCATTAGGC
66700774 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
*
66700839 ACTTTCACATTCATCACATCGGCTATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
*
66700870 CTTATCACATATATACACTTTCACATTCATCACATCGGCCGTTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
66700935 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
*
66700966 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTCGGCCTTATCAC--ATATAT
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
66701029 ACACTTTCACATTCATCACATCGGCCATTA-GC
64 ACACTTTCACATTCATCACATCGGCCATTAGGC
*
66701061 ACTCATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATA
1 -CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATA
* *
66701126 CACTTTCACATTCATCATATCGGCTATTAGGC
65 CACTTTCACATTCATCACATCGGCCATTAGGC
*
66701158 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
*
66701223 ACTTTCACATTCATCACATTGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
*
66701254 CTTATCACATTTATATACACTTTCACATTCATCACATCGGCCATTCGGCCTTATCAC--ATATAT
1 CTTATCACA--TATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
66701317 ACACTTTCACATTCATCACATCGGCCATTAGGC
64 ACACTTTCACATTCATCACATCGGCCATTAGGC
* *
66701350 CTTATCACATATATATACATTCACAT
1 CTTATCACATATATACACTTTCACAT
66701376 CACAATTATC
Statistics
Matches: 565, Mismatches: 26, Indels: 22
0.92 0.04 0.04
Matches are distributed among these distances:
94 105 0.19
95 4 0.01
96 365 0.65
97 2 0.00
98 89 0.16
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.33
Consensus pattern (96 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:66701336 original size:47 final size:47
Alignment explanation
Indices: 66700680--66701375 Score: 1072
Period size: 47 Copynumber: 14.6 Consensus size: 47
66700670 CCCTTCGGGA
* * * * * * *
66700680 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCGACTCGG-
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
66700726 CTCTGTCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CT-TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
66700774 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
66700821 CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
66700870 CTTATCACATATATACACTTTCACATTCATCACATCGGCCGTTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
66700917 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
66700966 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
66701015 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTA-GC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
66701061 ACTCATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 -CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
66701109 CTTATCACATATATATACACTTTCACATTCATCATATCGGCTATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
66701158 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
66701205 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
66701254 CTTATCACATTTATATACACTTTCACATTCATCACATCGGCCATTCGGC
1 CTTATCACA--TATATACACTTTCACATTCATCACATCGGCCATTAGGC
66701303 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
66701350 CTTATCACATATATATACATTCACAT
1 CTTATCACATATATACACTTTCACAT
66701376 CACAATTATC
Statistics
Matches: 608, Mismatches: 28, Indels: 27
0.92 0.04 0.04
Matches are distributed among these distances:
46 4 0.01
47 323 0.53
48 4 0.01
49 277 0.46
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:66704776 original size:24 final size:25
Alignment explanation
Indices: 66704736--66704785 Score: 59
Period size: 24 Copynumber: 2.0 Consensus size: 25
66704726 AAGGAATTCG
*
66704736 CACACACACGTGCCTC-TAATCATT
1 CACACACAAGTGCCTCTTAATCATT
*
66704760 CACACACATAGTG-CTCTTATTCATT
1 CACACACA-AGTGCCTCTTAATCATT
66704785 C
1 C
66704786 GTTATTACAC
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
24 11 0.50
25 11 0.50
ACGTcount: A:0.28, C:0.34, G:0.08, T:0.30
Consensus pattern (25 bp):
CACACACAAGTGCCTCTTAATCATT
Found at i:66704994 original size:40 final size:40
Alignment explanation
Indices: 66704962--66705143 Score: 256
Period size: 40 Copynumber: 4.5 Consensus size: 40
66704952 CCAGCATGAT
* * * *
66704962 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATATATCACTAGCACGAA
* *
66705002 TGCTCTTTGGAACTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATATATCACTAGCACGAA
* *
66705042 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATATATCACTAGCACGAA
* * *
66705082 TGCTCTTTGGGATTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATATATCACTAGCACGAA
*
66705122 TGCTCTTCGGAACTTAGTCCGG
1 TGCTCTTCGGAACTTAGCCCGG
66705144 TCGGAACTTA
Statistics
Matches: 123, Mismatches: 19, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 123 1.00
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (40 bp):
TGCTCTTCGGAACTTAGCCCGGATATATCACTAGCACGAA
Found at i:66705078 original size:80 final size:80
Alignment explanation
Indices: 66704962--66705143 Score: 283
Period size: 80 Copynumber: 2.3 Consensus size: 80
66704952 CCAGCATGAT
* * * *
66704962 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAATGCTCTTTGGAACTTAGCACGGATA
1 TGCTCTTCGGAACTTAGTCCGGATACAACACCAGCACGAATGCTCTTTGGAACTTAGCACGGATA
66705027 TATCACTAGCACGAA
66 TATCACTAGCACGAA
* * * * *
66705042 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATGCTCTTTGGGATTTAGCCCGGATA
1 TGCTCTTCGGAACTTAGTCCGGATACAACACCAGCACGAATGCTCTTTGGAACTTAGCACGGATA
66705107 TATCACTAGCACGAA
66 TATCACTAGCACGAA
66705122 TGCTCTTCGGAACTTAGTCCGG
1 TGCTCTTCGGAACTTAGTCCGG
66705144 TCGGAACTTA
Statistics
Matches: 93, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
80 93 1.00
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (80 bp):
TGCTCTTCGGAACTTAGTCCGGATACAACACCAGCACGAATGCTCTTTGGAACTTAGCACGGATA
TATCACTAGCACGAA
Found at i:66705149 original size:16 final size:16
Alignment explanation
Indices: 66705128--66705159 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
66705118 CGAATGCTCT
66705128 TCGGAACTTAGTCCGG
1 TCGGAACTTAGTCCGG
66705144 TCGGAACTTAGTCCGG
1 TCGGAACTTAGTCCGG
66705160 ATACAACACT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.19, C:0.25, G:0.31, T:0.25
Consensus pattern (16 bp):
TCGGAACTTAGTCCGG
Found at i:66705170 original size:96 final size:96
Alignment explanation
Indices: 66705048--66705239 Score: 366
Period size: 96 Copynumber: 2.0 Consensus size: 96
66705038 CGAATGCTCT
* *
66705048 TCGGAACTTAGTCCGGATACATCACTAGCACGAATGCTCTTTGGGATTTAGCCCGGATATATCAC
1 TCGGAACTTAGTCCGGATACAACACTAGCACGAATGCTCTTCGGGATTTAGCCCGGATATATCAC
66705113 TAGCACGAATGCTCTTCGGAACTTAGTCCGG
66 TAGCACGAATGCTCTTCGGAACTTAGTCCGG
66705144 TCGGAACTTAGTCCGGATACAACACTAGCACGAATGCTCTTCGGGATTTAGCCCGGATATATCAC
1 TCGGAACTTAGTCCGGATACAACACTAGCACGAATGCTCTTCGGGATTTAGCCCGGATATATCAC
66705209 TAGCACGAATGCTCTTCGGAACTTAGTCCGG
66 TAGCACGAATGCTCTTCGGAACTTAGTCCGG
66705240 ATACATCACT
Statistics
Matches: 94, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
96 94 1.00
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.26
Consensus pattern (96 bp):
TCGGAACTTAGTCCGGATACAACACTAGCACGAATGCTCTTCGGGATTTAGCCCGGATATATCAC
TAGCACGAATGCTCTTCGGAACTTAGTCCGG
Found at i:66705211 original size:40 final size:40
Alignment explanation
Indices: 66705144--66705365 Score: 347
Period size: 40 Copynumber: 5.6 Consensus size: 40
66705134 CTTAGTCCGG
* * *
66705144 TCGGAACTTAGTCCGGATACAACACTAGCACGAATGCTCT
1 TCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCT
* *
66705184 TCGGGATTTAGCCCGGATATATCACTAGCACGAATGCTCT
1 TCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCT
* * *
66705224 TCGGAACTTAGTCCGGATACATCACTAGCATGAATGCTCT
1 TCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCT
*
66705264 TCGGGACTTAGCCTGGATACATCACTAGCACGAATGCTCT
1 TCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCT
*
66705304 TCGGGACTTAGCCCGGATACATCACTAGCATGAATGCTCT
1 TCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCT
66705344 TCGGGACTTAGCCCGGAT-CATC
1 TCGGGACTTAGCCCGGATACATC
66705366 GTCGAGACCT
Statistics
Matches: 166, Mismatches: 16, Indels: 1
0.91 0.09 0.01
Matches are distributed among these distances:
39 4 0.02
40 162 0.98
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
TCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCT
Found at i:66705290 original size:176 final size:176
Alignment explanation
Indices: 66704980--66705319 Score: 563
Period size: 176 Copynumber: 1.9 Consensus size: 176
66704970 GGGACCTAGC
* *
66704980 CCGGATATAACACCAGCACGAATGCTCTTTGGAACTTAGCACGGATATATCACTAGCACGAATGC
1 CCGGATACAACACCAGCACGAATGCTCTTCGGAACTTAGCACGGATATATCACTAGCACGAATGC
* * *
66705045 TCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATGCTCTTTGGGATTTAGCCCGGATATAT
66 TCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACAT
*
66705110 CACTAGCACGAATGCTCTTCGGAACTTAGTCCGGTCGGAACTTAGT
131 CACTAGCACGAATGCTCTTCGGAACTTAGCCCGGTCGGAACTTAGT
* * * *
66705156 CCGGATACAACACTAGCACGAATGCTCTTCGGGATTTAGCCCGGATATATCACTAGCACGAATGC
1 CCGGATACAACACCAGCACGAATGCTCTTCGGAACTTAGCACGGATATATCACTAGCACGAATGC
* *
66705221 TCTTCGGAACTTAGTCCGGATACATCACTAGCATGAATGCTCTTCGGGACTTAGCCTGGATACAT
66 TCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACAT
*
66705286 CACTAGCACGAATGCTCTTCGGGACTTAGCCCGG
131 CACTAGCACGAATGCTCTTCGGAACTTAGCCCGG
66705320 ATACATCACT
Statistics
Matches: 151, Mismatches: 13, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
176 151 1.00
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.25
Consensus pattern (176 bp):
CCGGATACAACACCAGCACGAATGCTCTTCGGAACTTAGCACGGATATATCACTAGCACGAATGC
TCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACAT
CACTAGCACGAATGCTCTTCGGAACTTAGCCCGGTCGGAACTTAGT
Found at i:66705341 original size:216 final size:216
Alignment explanation
Indices: 66704962--66705359 Score: 638
Period size: 216 Copynumber: 1.8 Consensus size: 216
66704952 CCAGCATGAT
*
66704962 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAATGCTCTTTGGAACTTAGCACGGATA
1 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAATGCTCTTCGGAACTTAGCACGGATA
* *
66705027 TATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATGCTCTTTGG
66 CATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGG
* * *
66705092 GATTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGTCGGAACTTAGTC
131 GACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGTCGGAACTTAGTC
66705157 CGGATACAACACTAGCACGAA
196 CGGATACAACACTAGCACGAA
** * *
66705178 TGCTCTTCGGGATTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAGTC-CGGAT
1 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAATGCTCTTCGGAACTTAG-CACGGAT
* *
66705242 ACATCACTAGCATGAATGCTCTTCGGGACTTAG-CCTGGATACATCACTAGCACGAATGCTCTTC
65 ACATCACTAGCACGAATGCTCTTCGGAACTTAGTCC-GGATACATCACTAGCACGAATGCTCTTC
* *
66705306 GGGACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGGACTTAGCCCGG
129 GGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGG
66705360 ATCATCGTCG
Statistics
Matches: 166, Mismatches: 14, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
215 2 0.01
216 163 0.98
217 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (216 bp):
TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAATGCTCTTCGGAACTTAGCACGGATA
CATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGG
GACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGTCGGAACTTAGTC
CGGATACAACACTAGCACGAA
Found at i:66707694 original size:47 final size:47
Alignment explanation
Indices: 66707616--66708377 Score: 645
Period size: 47 Copynumber: 15.6 Consensus size: 47
66707606 CCCTTCGGGA
* * * * * *
66707616 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCGACTCGG-
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCGATTAGGC
* *
66707662 CTCTGTCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CT-TATCACATATATACACTTTCACATTCATCACATCGGCGATTAGGC
66707710 CTTATCACATATATACACTTTCACATTCATCACATCGGC-ATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCGATTAGGC
*
66707756 CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCGATTAGGC
66707805 CTTATCACATATATACACTTTCACATTCATCACATCGGCCG-TTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGG-CGATTAGGC
* *** ***
66707852 CTTATCACATATATACACTTTCACATTCA-CATATATAC-ACTTTCAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCGA-TTAGGC
* * ** * *
66707898 ATTCATCACATCGGCCGT-TAGGC-CTTATCACATATATATACACTTTCACATTCATC-ACATCG
1 CTT-ATCACAT-----ATATA--CACTT-TCAC----AT-T-CA---TCACA-TCGGCGA-TTAG
66707960 GC
46 GC
* * ** *
66707962 CATTAGGC-C-T-TAT-CACATATATATACACTT--TCACATTCATCACATT-GGCCATTCGGC
1 C-TTA-TCACATATATACAC-T-T-T-CACA-TTCATCACA-TCGGC-GATTAGG--------C
* *
66708019 CTTATCACAAATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCGATTAGGC
* *
66708066 CTCATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCGATTAGGC
*
66708113 CTTATCACATATATACACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATAT--ACACTTTCACATTCATCACATCGGCGATTAGGC
*
66708162 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCGATTAGGC
*
66708209 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCGATTAGGC
* * *
66708258 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCGATTAGGC
*
66708305 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCGATTAGGC
* *
66708352 CTTATCACATATATATACATTCACAT
1 CTTATCACATATATACACTTTCACAT
66708378 CACAATTATC
Statistics
Matches: 612, Mismatches: 47, Indels: 113
0.79 0.06 0.15
Matches are distributed among these distances:
45 1 0.00
46 26 0.04
47 348 0.57
48 34 0.06
49 122 0.20
50 1 0.00
51 3 0.00
52 4 0.01
53 5 0.01
54 6 0.01
55 12 0.02
56 12 0.02
57 7 0.01
58 9 0.01
59 7 0.01
63 4 0.01
64 8 0.01
65 3 0.00
ACGTcount: A:0.30, C:0.29, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCGATTAGGC
Found at i:66707861 original size:69 final size:67
Alignment explanation
Indices: 66707809--66707935 Score: 227
Period size: 69 Copynumber: 1.9 Consensus size: 67
66707799 TTAGGCCTTA
*
66707809 TCACATATATACACTTTCACATTCATCACATCGGCCGTTAGGCCTTATCACATATATACACTTTC
1 TCACATATATACACTTTCACATTCATCACATCGGCCGTTAGGCCTTATCACATATATACACCTT-
66707874 ACAT
65 -CAT
66707878 TCACATATATACACTTTCACATTCATCACATCGGCCGTTAGGCCTTATCACATATATA
1 TCACATATATACACTTTCACATTCATCACATCGGCCGTTAGGCCTTATCACATATATA
66707936 TACACTTTCA
Statistics
Matches: 58, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
69 58 1.00
ACGTcount: A:0.31, C:0.28, G:0.08, T:0.33
Consensus pattern (67 bp):
TCACATATATACACTTTCACATTCATCACATCGGCCGTTAGGCCTTATCACATATATACACCTTC
AT
Found at i:66707881 original size:22 final size:22
Alignment explanation
Indices: 66707856--66707902 Score: 94
Period size: 22 Copynumber: 2.1 Consensus size: 22
66707846 TTAGGCCTTA
66707856 TCACATATATACACTTTCACAT
1 TCACATATATACACTTTCACAT
66707878 TCACATATATACACTTTCACAT
1 TCACATATATACACTTTCACAT
66707900 TCA
1 TCA
66707903 TCACATCGGC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.36, C:0.28, G:0.00, T:0.36
Consensus pattern (22 bp):
TCACATATATACACTTTCACAT
Found at i:66708142 original size:143 final size:143
Alignment explanation
Indices: 66707878--66708377 Score: 864
Period size: 143 Copynumber: 3.5 Consensus size: 143
66707868 ACTTTCACAT
*
66707878 TCACATATATACACTTTCACATTCATCACATCGGCCGTTAGGCCTTATCACATATATATACACTT
1 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA-ATATATACACTT
66707943 TCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATT
65 TCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA-ACACTTTCACATTCATCACATT
66708008 GGCCATTCGGCCTTA
129 GGCCATTCGGCCTTA
* *
66708023 TCACAAATATACACTTTCACATTCATCACATCGGCCATTAGGCCTCATCAC-ATATATACACTTT
1 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAATATATACACTTT
* *
66708087 CACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACACTTTCACATTCATCACATCG
66 CACATTCATCACATCGGCCATTAGGCCTTATCACATATATA-ACACTTTCACATTCATCACATTG
* *
66708152 GCTATTAGGCCTTA
130 GCCATTCGGCCTTA
66708166 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTT
1 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA-ATATATACACTT
66708231 TCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT-ACACTTTCACATTCATCACATTG
65 TCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAACACTTTCACATTCATCACATTG
66708295 GCCATTCGGCCTTA
130 GCCATTCGGCCTTA
66708309 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACA--T
1 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA-ATATATACACTT
66708372 TCACAT
65 TCACAT
66708378 CACAATTATC
Statistics
Matches: 339, Mismatches: 14, Indels: 8
0.94 0.04 0.02
Matches are distributed among these distances:
141 7 0.02
143 232 0.68
145 100 0.29
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (143 bp):
TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAATATATACACTTT
CACATTCATCACATCGGCCATTAGGCCTTATCACATATATAACACTTTCACATTCATCACATTGG
CCATTCGGCCTTA
Found at i:66708366 original size:96 final size:94
Alignment explanation
Indices: 66707878--66708377 Score: 829
Period size: 96 Copynumber: 5.2 Consensus size: 94
66707868 ACTTTCACAT
*
66707878 TCACATATATACACTTTCACATTCATCACATCGGCCGTTAGGCCTTATCACATATATATACACTT
1 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACTT
66707943 TCACATTCATCACATCGGCCATTAGGCCTTA
64 TCACATTCATCACATCGGCCATTAGGCCTTA
* * *
66707974 TCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACAAATATACACTT
1 TCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTT
*
66708039 TCACATTCATCACATCGGCCATTAGGCCTCA
64 TCACATTCATCACATCGGCCATTAGGCCTTA
*
66708070 TCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACACTT
1 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT--ACACTT
*
66708135 TCACATTCATCACATCGGCTATTAGGCCTTA
64 TCACATTCATCACATCGGCCATTAGGCCTTA
66708166 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTT
1 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACTT
66708231 TCACATTCATCACATCGGCCATTAGGCCTTA
64 TCACATTCATCACATCGGCCATTAGGCCTTA
* *
66708262 TCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTC
1 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTC
66708327 ACATTCATCACATCGGCCATTAGGCCTTA
66 ACATTCATCACATCGGCCATTAGGCCTTA
* *
66708356 TCACATATATATACATTCACAT
1 TCACATATATACACTTTCACAT
66708378 CACAATTATC
Statistics
Matches: 381, Mismatches: 17, Indels: 14
0.92 0.04 0.03
Matches are distributed among these distances:
94 112 0.29
96 219 0.57
98 50 0.13
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (94 bp):
TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTC
ACATTCATCACATCGGCCATTAGGCCTTA
Found at i:66711062 original size:51 final size:51
Alignment explanation
Indices: 66710986--66711105 Score: 204
Period size: 51 Copynumber: 2.4 Consensus size: 51
66710976 GTCATACCTG
* *
66710986 CACTTAGTACTACACACGTGATCGAAGTTATCGGGTACGCATAGTAGCCTA
1 CACTTAGTACTACACATGTGATCGAAGTTATCGGGTACGCACAGTAGCCTA
* *
66711037 CACTTAGTACTACACATGTGATCGAAGTTATCGGGTATGCACAGTAGCCTG
1 CACTTAGTACTACACATGTGATCGAAGTTATCGGGTACGCACAGTAGCCTA
66711088 CACTTAGTACTACACATG
1 CACTTAGTACTACACATG
66711106 CAACCAATAA
Statistics
Matches: 65, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
51 65 1.00
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.27
Consensus pattern (51 bp):
CACTTAGTACTACACATGTGATCGAAGTTATCGGGTACGCACAGTAGCCTA
Found at i:66713975 original size:46 final size:45
Alignment explanation
Indices: 66713840--66714055 Score: 147
Period size: 46 Copynumber: 4.7 Consensus size: 45
66713830 CTATTGTGAC
* * *
66713840 CTAGTGTAAGACATGTCTGGGACATGCATCAGC-CACATTG-TGAGAG
1 CTAGTGTAAGACATGTCTGGGACATGCATCGGCTTA-A--GACGAGAG
* * * * *
66713886 CCAGTGTAAGACCATCTCTGGTACATGGCATCGGCATTGAGACGAGTG
1 CTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC-TTAAGACGAGAG
66713934 CTAGTGTAAGACATGTCTGGGACATGCATCGGCTTCAAGACGTA-AG
1 CTAGTGTAAGACATGTCTGGGACATGCATCGGCTT-AAGACG-AGAG
* * * * ** * *
66713980 CCAGTATAAGACATGTGTGGGACATTCATCAAC-TACGA-GAGTG
1 CTAGTGTAAGACATGTCTGGGACATGCATCGGCTTAAGACGAGAG
66714023 -TCAGTGTAAGACCATGTCTGGGACATTGCATCG
1 CT-AGTGTAAGA-CATGTCTGGGACA-TGCATCG
66714056 ACACAGATAT
Statistics
Matches: 133, Mismatches: 26, Indels: 23
0.73 0.14 0.13
Matches are distributed among these distances:
42 1 0.01
43 10 0.08
44 15 0.11
45 8 0.06
46 51 0.38
47 26 0.20
48 21 0.16
49 1 0.01
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (45 bp):
CTAGTGTAAGACATGTCTGGGACATGCATCGGCTTAAGACGAGAG
Found at i:66720069 original size:47 final size:47
Alignment explanation
Indices: 66720006--66720645 Score: 896
Period size: 47 Copynumber: 13.5 Consensus size: 47
66719996 CCCTTCGGGA
* * *
66720006 CTTATCACATTTATACACTTCCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
66720053 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * *
66720100 CTTATCTCATATATGCA-TGTTCACATTCATCACATTGGCCATTCGAC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* * *
66720147 CTAATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
66720194 CTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
66720241 CTTATCTCATATATGCA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* * *
66720288 CTTATCACACATACACA-TGTTCACATTCATCACATTGGCGATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
*
66720335 CTTATCACATATATATACGCTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
66720384 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
66720431 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * *
66720480 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
66720527 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
66720574 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCA-TCAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTC-GGC
66720623 CTTATCACATATATACACTTTCA
1 CTTATCACATATATACACTTTCA
66720646 AATTTATTCA
Statistics
Matches: 551, Mismatches: 33, Indels: 18
0.92 0.05 0.03
Matches are distributed among these distances:
46 1 0.00
47 417 0.76
48 1 0.00
49 131 0.24
50 1 0.00
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:66722043 original size:85 final size:84
Alignment explanation
Indices: 66721914--66722091 Score: 338
Period size: 85 Copynumber: 2.1 Consensus size: 84
66721904 TATTTTATTG
*
66721914 CCCATGCCCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATG-TTT
66721979 TAGCCATAACATCTTGTCCA
65 TAGCCATAACATCTTGTCCA
66721999 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
66722064 AGCCATAACATCTTGTCCA
66 AGCCATAACATCTTGTCCA
66722083 CCCATGCTC
1 CCCATGCTC
66722092 ATGGCCGGCC
Statistics
Matches: 92, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
84 32 0.35
85 60 0.65
ACGTcount: A:0.26, C:0.28, G:0.08, T:0.37
Consensus pattern (84 bp):
CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
AGCCATAACATCTTGTCCA
Found at i:66723392 original size:40 final size:40
Alignment explanation
Indices: 66723347--66723698 Score: 506
Period size: 40 Copynumber: 8.8 Consensus size: 40
66723337 CGAATACACG
* * * *
66723347 TCACCAGCATGATTGCTCTTCGGGACCTAGCCCGGATATA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
* * * ** * *
66723387 ACACCAGCACGAATGCTCTTCGGGGTTTAGCACGGATATA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
* ** * *
66723427 TCACTAGCACGAATGCTCTTTTGAACTTAGCCCGGATATA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
66723467 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
*
66723507 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCAGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
* * *
66723547 TCACTAGCACGAATGCTTTTCGGAACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
*
66723587 TCACTAGCATGAATGCTCTTCGGAACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
*
66723627 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATATA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
66723667 TCACTAGCATGAATGCTCTTCGGGACTTAGCC
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCC
66723699 TGATTCATCG
Statistics
Matches: 283, Mismatches: 29, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 283 1.00
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (40 bp):
TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
Found at i:66723830 original size:38 final size:38
Alignment explanation
Indices: 66723761--66723835 Score: 107
Period size: 38 Copynumber: 2.0 Consensus size: 38
66723751 GAATTTTAAT
*
66723761 CCGGACATAATCTCTGTACATAGCCATCGGGTCTTTAC
1 CCGGACATAATCTCTGTACATAGCCAGCGGGTCTTTAC
* *
66723799 CCGGACATAATCTCT-TCATATAGTCAGCGGGTCTTTA
1 CCGGACATAATCTCTGT-ACATAGCCAGCGGGTCTTTA
66723836 AACTCGGATT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
37 1 0.03
38 32 0.97
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.31
Consensus pattern (38 bp):
CCGGACATAATCTCTGTACATAGCCAGCGGGTCTTTAC
Found at i:66726338 original size:47 final size:47
Alignment explanation
Indices: 66726266--66726862 Score: 860
Period size: 47 Copynumber: 12.6 Consensus size: 47
66726256 CCCTTCGAGA
* * *
66726266 CTTATCACATTTATACACTTCCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
66726313 CTTATCACATATATACACTTTCACATTAATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
66726360 CTTATCTCATATATGCA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
66726407 CTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
66726454 CTTATCTCATATATGCA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* * *
66726501 CTTCTCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
66726548 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
66726597 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
66726644 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * * *
66726693 CTTATCACATATATACACTTTCACATTCATCACATCGACTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * *
66726740 CTTATCACATATATACACTTTCTCATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
66726787 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
66726836 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
66726863 TATTCAAATA
Statistics
Matches: 508, Mismatches: 34, Indels: 16
0.91 0.06 0.03
Matches are distributed among these distances:
46 1 0.00
47 372 0.73
49 134 0.26
50 1 0.00
ACGTcount: A:0.28, C:0.29, G:0.09, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:66726626 original size:96 final size:94
Alignment explanation
Indices: 66726266--66726862 Score: 860
Period size: 96 Copynumber: 6.3 Consensus size: 94
66726256 CCCTTCGAGA
* * *
66726266 CTTATCACATTTATACACTTCCACATCCATCACATTGGCCATTCGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
* *
66726331 TTTCACATTAATCACATTGGCCATTCGGC
66 TTTCACATTCATCACATTGGCCATTAGGC
* * * *
66726360 CTTATCTCATATATGCA-TGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACACA
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACA
*
66726424 -TGTTCACATTCATCACATTGGCCATTCGGC
65 CT-TTCACATTCATCACATTGGCCATTAGGC
* * * * *
66726454 CTTATCTCATATATGCA-TGTTCACATTCATCACATTGGCCATTCGGCCTTCTCACACATACACA
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACA
*
66726518 -TGTTCACATTCATCACATTGGCCATTCGGC
65 CT-TTCACATTCATCACATTGGCCATTAGGC
66726548 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
*
66726613 ACTTTCACATTCATCACATCGGCCATTAGGC
64 ACTTTCACATTCATCACATTGGCCATTAGGC
*
66726644 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATAC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
* * *
66726709 ACTTTCACATTCATCACATCGACTATTAGGC
64 ACTTTCACATTCATCACATTGGCCATTAGGC
* * *
66726740 CTTATCACATATATACACTTTCTCATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCAC--ATATATAC
66726805 ACTTTCACATTCATCACATTGGCCATTAGGC
64 ACTTTCACATTCATCACATTGGCCATTAGGC
66726836 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
66726863 TATTCAAATA
Statistics
Matches: 470, Mismatches: 25, Indels: 14
0.92 0.05 0.03
Matches are distributed among these distances:
93 2 0.00
94 227 0.48
96 239 0.51
97 2 0.00
ACGTcount: A:0.28, C:0.29, G:0.09, T:0.34
Consensus pattern (94 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
TTTCACATTCATCACATTGGCCATTAGGC
Found at i:66728255 original size:85 final size:85
Alignment explanation
Indices: 66728126--66728304 Score: 340
Period size: 85 Copynumber: 2.1 Consensus size: 85
66728116 TATTTTATTG
*
66728126 CCCATGCCCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATATTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATATTTT
66728191 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
*
66728211 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATATTTT
66728276 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
66728296 CCCATGCTC
1 CCCATGCTC
66728305 ATGGCCGGCC
Statistics
Matches: 92, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
85 92 1.00
ACGTcount: A:0.27, C:0.28, G:0.08, T:0.37
Consensus pattern (85 bp):
CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATATTTT
TAGCCATAACATCTTGTCCA
Found at i:66732548 original size:39 final size:39
Alignment explanation
Indices: 66732462--66732584 Score: 133
Period size: 39 Copynumber: 3.1 Consensus size: 39
66732452 CAAATCCAAT
* *
66732462 CACCACCACAAA-GCATGCGGGACTTTAAGCCTGGATATAA
1 CACCAGCACAAAGGC-TGCGGGACTTT-AGCCCGGATATAA
* *
66732502 TACCAGCACAAAGGCTGCGGGACTTTACCCCGGATATAA
1 CACCAGCACAAAGGCTGCGGGACTTTAGCCCGGATATAA
* * **
66732541 CACCAGCACGAATGCCTTTGGGAC-TTAGCCCGGATATAA
1 CACCAGCAC-AAAGGCTGCGGGACTTTAGCCCGGATATAA
66732580 CACCA
1 CACCA
66732585 TTATAAAGTC
Statistics
Matches: 71, Mismatches: 10, Indels: 5
0.83 0.12 0.06
Matches are distributed among these distances:
39 38 0.54
40 31 0.44
41 2 0.03
ACGTcount: A:0.32, C:0.29, G:0.21, T:0.18
Consensus pattern (39 bp):
CACCAGCACAAAGGCTGCGGGACTTTAGCCCGGATATAA
Found at i:66732690 original size:28 final size:28
Alignment explanation
Indices: 66732657--66732738 Score: 101
Period size: 28 Copynumber: 2.9 Consensus size: 28
66732647 ATTTAATCAT
* *
66732657 TCAATATTTTGCACACTAAGTGTCATTC
1 TCAATATTTCGCACACTAAGTGCCATTC
* *
66732685 TCAATATCTCGCACATTAAGTGCCATTC
1 TCAATATTTCGCACACTAAGTGCCATTC
* * *
66732713 TCAATATTTCGTACACTGAGTACCAT
1 TCAATATTTCGCACACTAAGTGCCAT
66732739 ATTTGATTGC
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
28 45 1.00
ACGTcount: A:0.29, C:0.24, G:0.11, T:0.35
Consensus pattern (28 bp):
TCAATATTTCGCACACTAAGTGCCATTC
Found at i:66748278 original size:45 final size:49
Alignment explanation
Indices: 66748167--66748279 Score: 128
Period size: 49 Copynumber: 2.4 Consensus size: 49
66748157 GTAAGGTGCT
* *
66748167 GATGCCATGTCCCAGACATGGTCTCACAATGGCTATCATCTTCGAGGCT
1 GATGCCATGTCCCAGACATGGTCTCACAATGACTATCATCTTCGAGGCC
* * * *
66748216 GATGCCATGTCCTAGACATGGTCTTAGACTGAC-A-CATC-TCGTA-GCC
1 GATGCCATGTCCCAGACATGGTCTCACAATGACTATCATCTTCG-AGGCC
66748262 GATG-CATGTCCCAGACAT
1 GATGCCATGTCCCAGACAT
66748280 ATTTTACACT
Statistics
Matches: 56, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
45 13 0.23
46 9 0.16
47 5 0.09
48 1 0.02
49 28 0.50
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.26
Consensus pattern (49 bp):
GATGCCATGTCCCAGACATGGTCTCACAATGACTATCATCTTCGAGGCC
Found at i:66757408 original size:55 final size:55
Alignment explanation
Indices: 66757307--66757412 Score: 128
Period size: 55 Copynumber: 1.9 Consensus size: 55
66757297 CTCGTGTTAA
*
66757307 TTTAACAGGTTCGACCACGGGTGTTCCACATGGGCGTGTCGGACGCCCGTGCTGC
1 TTTAACAGGTTCGACCACGGGTGTTCCACACGGGCGTGTCGGACGCCCGTGCTGC
* * *
66757362 TTTAACAGGTTC-ACCCACGGTTCGTT-CATACGGGTGTGT-GGCACGCCCGTG
1 TTTAACAGGTTCGA-CCACGGGT-GTTCCACACGGGCGTGTCGG-ACGCCCGTG
66757413 TTGTTTTGGC
Statistics
Matches: 44, Mismatches: 4, Indels: 6
0.81 0.07 0.11
Matches are distributed among these distances:
54 3 0.07
55 38 0.86
56 3 0.07
ACGTcount: A:0.15, C:0.28, G:0.31, T:0.25
Consensus pattern (55 bp):
TTTAACAGGTTCGACCACGGGTGTTCCACACGGGCGTGTCGGACGCCCGTGCTGC
Found at i:66761252 original size:41 final size:41
Alignment explanation
Indices: 66761207--66761284 Score: 156
Period size: 41 Copynumber: 1.9 Consensus size: 41
66761197 TTCATTCCCT
66761207 TTAGGTATTTAGGGGATTTAGTTCATAACTAAATAAGCCCC
1 TTAGGTATTTAGGGGATTTAGTTCATAACTAAATAAGCCCC
66761248 TTAGGTATTTAGGGGATTTAGTTCATAACTAAATAAG
1 TTAGGTATTTAGGGGATTTAGTTCATAACTAAATAAG
66761285 AAAACATCTC
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 37 1.00
ACGTcount: A:0.33, C:0.10, G:0.21, T:0.36
Consensus pattern (41 bp):
TTAGGTATTTAGGGGATTTAGTTCATAACTAAATAAGCCCC
Found at i:66761412 original size:21 final size:21
Alignment explanation
Indices: 66761388--66761429 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
66761378 ATCCGACTTC
66761388 TGAGATGGATCAATCGGCTTT
1 TGAGATGGATCAATCGGCTTT
66761409 TGAGATGGATCAATCGGCTTT
1 TGAGATGGATCAATCGGCTTT
66761430 CTTGGAGTAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.24, C:0.14, G:0.29, T:0.33
Consensus pattern (21 bp):
TGAGATGGATCAATCGGCTTT
Found at i:66765671 original size:46 final size:45
Alignment explanation
Indices: 66765611--66765878 Score: 186
Period size: 46 Copynumber: 5.7 Consensus size: 45
66765601 GGGCTATTGT
* * *
66765611 GAGCTAGTGTAAGACATGTCTGGGACATGCATTGGCCACACTATGA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACA-GATGA
* *
66765657 GAGCCAATGTAAGACCATGTCTGGGACATGGCATCGG-CATTGAGATGA
1 GAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCA--CAGATGA
* * * * *
66765705 GTGCTAGTGTAAGACATGTCTGGGACATGCATCGACCTCGAGACGTA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCAC-AGATG-A
* * * *
66765752 -AGCCAGTGTAAGACATGTCTGGGACATGCATTGACTAC-GA-AA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACAGATGA
* * * *
66765794 GTGTCAGTGTAAGACCATGTATGGGACATGGCATC-GACACAGATATGCTA
1 GAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCACAG--ATG--A
**
66765844 GAGCTTGTGTAAGACCATGTCTGGGACATAGCATC
1 GAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATC
66765879 AGCACCTGCA
Statistics
Matches: 174, Mismatches: 32, Indels: 28
0.74 0.14 0.12
Matches are distributed among these distances:
42 1 0.01
43 11 0.06
44 17 0.10
45 5 0.03
46 55 0.32
47 33 0.19
48 21 0.12
49 1 0.01
50 30 0.17
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.23
Consensus pattern (45 bp):
GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACAGATGA
Found at i:66765868 original size:140 final size:140
Alignment explanation
Indices: 66765616--66765878 Score: 345
Period size: 137 Copynumber: 1.9 Consensus size: 140
66765606 ATTGTGAGCT
* * *
66765616 AGTGTAAGACATGTCTGGGACATGCATTGGCCACACTATGAGAGCCAATGTAAGACCATGTCTGG
1 AGTGTAAGACATGTCTGGGACATGCATTGG-CACACGATAAGAGCCAATGTAAGACCATGTATGG
* ** *
66765681 GACATGGCATCGGCATTGAGATGAGTGCTAGTGTAAGACATGTCTGGGACAT-GCATCGACCTCG
65 GACATGGCATCGACACAGAGATGAGAGCTAGTGTAAGACATGTCTGGGACATAGCATCGACCTCG
66765745 AGACGTAAGCC
130 AGACGTAAGCC
* * *
66765756 AGTGTAAGACATGTCTGGGACATGCATT-G-ACTACGA-AAGTGTCAGTGTAAGACCATGTATGG
1 AGTGTAAGACATGTCTGGGACATGCATTGGCAC-ACGATAAGAGCCAATGTAAGACCATGTATGG
* *
66765818 GACATGGCATCGACACAGATATGCTAGAGCTTGTGTAAGACCATGTCTGGGACATAGCATC
65 GACATGGCATCGACACAGAGATG--AGAGCTAGTGTAAGA-CATGTCTGGGACATAGCATC
66765879 AGCACCTGCA
Statistics
Matches: 106, Mismatches: 12, Indels: 9
0.83 0.09 0.07
Matches are distributed among these distances:
137 42 0.40
138 3 0.03
139 14 0.13
140 42 0.40
141 5 0.05
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.23
Consensus pattern (140 bp):
AGTGTAAGACATGTCTGGGACATGCATTGGCACACGATAAGAGCCAATGTAAGACCATGTATGGG
ACATGGCATCGACACAGAGATGAGAGCTAGTGTAAGACATGTCTGGGACATAGCATCGACCTCGA
GACGTAAGCC
Found at i:66770104 original size:50 final size:50
Alignment explanation
Indices: 66770041--66770333 Score: 358
Period size: 50 Copynumber: 5.8 Consensus size: 50
66770031 ACCGAAGTTC
* **
66770041 TCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCAACCTAACAA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAA
*
66770091 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACCA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAA
** * * * * *
66770141 TCTAATACACGTAGTAGCCTGCATTTAGTACTACACATGTGATCGAAGCTA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAA-CAA
* * *
66770192 TCGGGTACACATAGTAGCCTGAACTTAGTACTACACATGCGACCTAACAA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAA
* *
66770242 TCTGGTACACGTAGTAG-CTGCACTTAGTACTACACACGTGACCTAA-AA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAA
* *
66770290 -CTGTCTTAAACACATAGTAGCCTGCACATAGTACTACACATGTG
1 TCTG--GT--ACACATAGTAGCCTGCACTTAGTACTACACATGTG
66770334 TTCTCACAAT
Statistics
Matches: 207, Mismatches: 30, Indels: 10
0.84 0.12 0.04
Matches are distributed among these distances:
47 3 0.01
48 2 0.01
49 27 0.13
50 104 0.50
51 50 0.24
52 21 0.10
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.26
Consensus pattern (50 bp):
TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAA
Found at i:66770226 original size:101 final size:100
Alignment explanation
Indices: 66770052--66770333 Score: 359
Period size: 101 Copynumber: 2.8 Consensus size: 100
66770042 CTGGTACGCA
** * *
66770052 TAGTAGCCTGCACTTAGTACTACACATGCAACCTAACAATCTGGTACACATAGTAGCCTGCACTT
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCAAACTATCTGGTACACATAGTAGCCTGCACTT
*
66770117 AGTACTACACATGTGACCTAACCATCTAATACACG
66 AGTACTACACATGTGACCTAACAATCTAATACACG
* * * * *
66770152 TAGTAGCCTGCATTTAGTACTACACATGTGATCGAAGCTATCGGGTACACATAGTAGCCTGAACT
1 TAGTAGCCTGCACTTAGTACTACACATGTGA-CCAAACTATCTGGTACACATAGTAGCCTGCACT
* **
66770217 TAGTACTACACATGCGACCTAACAATCTGGTACACG
65 TAGTACTACACATGTGACCTAACAATCTAATACACG
* * ***
66770253 TAGTAG-CTGCACTTAGTACTACACACGTGACCTAAAACTGTCTTAAACACATAGTAGCCTGCAC
1 TAGTAGCCTGCACTTAGTACTACACATGTGACC--AAACTATCTGGTACACATAGTAGCCTGCAC
*
66770317 ATAGTACTACACATGTG
64 TTAGTACTACACATGTG
66770334 TTCTCACAAT
Statistics
Matches: 154, Mismatches: 25, Indels: 5
0.84 0.14 0.03
Matches are distributed among these distances:
99 1 0.01
100 50 0.32
101 103 0.67
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.26
Consensus pattern (100 bp):
TAGTAGCCTGCACTTAGTACTACACATGTGACCAAACTATCTGGTACACATAGTAGCCTGCACTT
AGTACTACACATGTGACCTAACAATCTAATACACG
Found at i:66773001 original size:27 final size:27
Alignment explanation
Indices: 66772971--66773093 Score: 147
Period size: 27 Copynumber: 4.5 Consensus size: 27
66772961 TGAATATGAT
* * **
66772971 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGATTTGACTATGTA
66772998 GCACTAAGTGTGCGAGTTTGACTATGTA
1 GCACTAAGTGTGCGA-TTTGACTATGTA
* *
66773026 GCACTAAGTGTGCGATTTGATTACGTA
1 GCACTAAGTGTGCGATTTGACTATGTA
* * *
66773053 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGATTTGACTATGTA
*
66773080 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
66773094 GACTCAATAT
Statistics
Matches: 85, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
27 62 0.73
28 23 0.27
ACGTcount: A:0.25, C:0.16, G:0.29, T:0.29
Consensus pattern (27 bp):
GCACTAAGTGTGCGATTTGACTATGTA
Found at i:66773034 original size:55 final size:54
Alignment explanation
Indices: 66772971--66773093 Score: 156
Period size: 55 Copynumber: 2.3 Consensus size: 54
66772961 TGAATATGAT
* * *
66772971 GCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGTTTGACTATGTA
1 GCACTAAGTGTGCGAATTGACCACGCAGCACTAAGTGTGCGAG-TTGACTATATA
* ** * *
66773026 GCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGAATTGACCACGCAGCACTAAGTGTGCGAGTTGACTATATA
*
66773080 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
66773094 GACTCAATAT
Statistics
Matches: 59, Mismatches: 9, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
54 22 0.37
55 37 0.63
ACGTcount: A:0.25, C:0.16, G:0.29, T:0.29
Consensus pattern (54 bp):
GCACTAAGTGTGCGAATTGACCACGCAGCACTAAGTGTGCGAGTTGACTATATA
Found at i:66775889 original size:14 final size:15
Alignment explanation
Indices: 66775863--66775893 Score: 55
Period size: 14 Copynumber: 2.1 Consensus size: 15
66775853 TATTAAGTTG
66775863 ATTTTGTTTTTCAAA
1 ATTTTGTTTTTCAAA
66775878 ATTTTG-TTTTCAAA
1 ATTTTGTTTTTCAAA
66775892 AT
1 AT
66775894 AAATGACTTC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 10 0.62
15 6 0.38
ACGTcount: A:0.29, C:0.06, G:0.06, T:0.58
Consensus pattern (15 bp):
ATTTTGTTTTTCAAA
Found at i:66783149 original size:15 final size:16
Alignment explanation
Indices: 66783129--66783161 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
66783119 GTAGTTCGCT
66783129 AAGGAG-AGGGGAAGA
1 AAGGAGTAGGGGAAGA
*
66783144 AAGGAGTAGGTGAAGA
1 AAGGAGTAGGGGAAGA
66783160 AA
1 AA
66783162 TAAATAAAAG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 6 0.38
16 10 0.62
ACGTcount: A:0.48, C:0.00, G:0.45, T:0.06
Consensus pattern (16 bp):
AAGGAGTAGGGGAAGA
Found at i:66784546 original size:44 final size:45
Alignment explanation
Indices: 66784479--66784567 Score: 153
Period size: 44 Copynumber: 2.0 Consensus size: 45
66784469 AAATGGTTAT
*
66784479 TAATCCATTTTTATTTATGTTAATAGTGGGTAATGATGATGATGG
1 TAATCCATTTTTATTTATGTTAATAGTAGGTAATGATGATGATGG
*
66784524 TAATCCA-TTTTCTTTATGTTAATAGTAGGTAATGATGATGATGG
1 TAATCCATTTTTATTTATGTTAATAGTAGGTAATGATGATGATGG
66784568 CCATTAAATG
Statistics
Matches: 42, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
44 35 0.83
45 7 0.17
ACGTcount: A:0.29, C:0.06, G:0.21, T:0.44
Consensus pattern (45 bp):
TAATCCATTTTTATTTATGTTAATAGTAGGTAATGATGATGATGG
Found at i:66788065 original size:39 final size:39
Alignment explanation
Indices: 66788003--66788091 Score: 124
Period size: 39 Copynumber: 2.3 Consensus size: 39
66787993 GAAATGGTAT
** * *
66788003 AACTACTCCTATTTTCCCTCTACTTCCTATAATATAGAA
1 AACTACTCCTATTCACCCCCTACTTCCTATAATATAAAA
*
66788042 AACTACTCTTATTCACCCCCTACTTCCTATAATATAAAA
1 AACTACTCCTATTCACCCCCTACTTCCTATAATATAAAA
*
66788081 AATTACTCCTA
1 AACTACTCCTA
66788092 AAATAAATTA
Statistics
Matches: 43, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
39 43 1.00
ACGTcount: A:0.34, C:0.29, G:0.01, T:0.36
Consensus pattern (39 bp):
AACTACTCCTATTCACCCCCTACTTCCTATAATATAAAA
Found at i:66791192 original size:17 final size:17
Alignment explanation
Indices: 66791151--66791183 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
66791141 ACAATAATAT
66791151 AAAATA-ATGATATGTAC
1 AAAATATAT-ATATGTAC
66791168 AAAATATATATATGTA
1 AAAATATATATATGTA
66791184 TATAATATAG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 13 0.87
18 2 0.13
ACGTcount: A:0.55, C:0.03, G:0.09, T:0.33
Consensus pattern (17 bp):
AAAATATATATATGTAC
Found at i:66791434 original size:15 final size:16
Alignment explanation
Indices: 66791416--66791450 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
66791406 TTTTTTTTTT
66791416 AATTTTT-TTAAGACC
1 AATTTTTGTTAAGACC
*
66791431 AATTTTTGTTTAGACC
1 AATTTTTGTTAAGACC
66791447 AATT
1 AATT
66791451 ACAAATAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 7 0.39
16 11 0.61
ACGTcount: A:0.31, C:0.11, G:0.09, T:0.49
Consensus pattern (16 bp):
AATTTTTGTTAAGACC
Found at i:66792015 original size:15 final size:15
Alignment explanation
Indices: 66791996--66792051 Score: 94
Period size: 15 Copynumber: 3.7 Consensus size: 15
66791986 TTTATTGGTT
66791996 TTTTTTTTGCTGGAA
1 TTTTTTTTGCTGGAA
*
66792011 ATTTTTTTGCTGGAA
1 TTTTTTTTGCTGGAA
*
66792026 TTTTTTTTGCTGGAT
1 TTTTTTTTGCTGGAA
66792041 TTTTTTTTGCT
1 TTTTTTTTGCT
66792052 CTTTTTTCTC
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 38 1.00
ACGTcount: A:0.11, C:0.07, G:0.18, T:0.64
Consensus pattern (15 bp):
TTTTTTTTGCTGGAA
Found at i:66792309 original size:29 final size:28
Alignment explanation
Indices: 66792261--66792348 Score: 79
Period size: 30 Copynumber: 3.0 Consensus size: 28
66792251 ACTCCTGGGG
*
66792261 CTAAATGTAATTTTTAGAAAATTTAGGGT
1 CTAAATGTAA-TTTAAGAAAATTTAGGGT
*
66792290 -TAAAATGTAATTTAAGGAAAGTTTAGGGGT
1 CT-AAATGTAATTTAA-GAAAATTTA-GGGT
* *
66792320 CTAAGTGAAATTTAAAGAAAATTTTAGGG
1 CTAAATGTAATTT-AAGAAAA-TTTAGGG
66792349 GTCACAATGC
Statistics
Matches: 48, Mismatches: 5, Indels: 11
0.75 0.08 0.17
Matches are distributed among these distances:
28 5 0.10
29 16 0.33
30 20 0.42
31 7 0.15
ACGTcount: A:0.41, C:0.02, G:0.22, T:0.35
Consensus pattern (28 bp):
CTAAATGTAATTTAAGAAAATTTAGGGT
Found at i:66792363 original size:31 final size:28
Alignment explanation
Indices: 66792276--66792363 Score: 77
Period size: 31 Copynumber: 3.0 Consensus size: 28
66792266 TGTAATTTTT
* * *
66792276 AGAAAATTTAGGGTTAAAATGTAATTTA
1 AGAAAATTTAGGGGTCAAATGAAATTTA
* *
66792304 AGGAAAGTTTAGGGGTCTAAGTGAAATTTAA
1 A-GAAAATTTAGGGGTC-AAATGAAATTT-A
*
66792335 AGAAAATTTTAGGGGTCACAATGCAATTT
1 AGAAAA-TTTAGGGGTCA-AATGAAATTT
66792364 TTTTATTTTT
Statistics
Matches: 47, Mismatches: 8, Indels: 7
0.76 0.13 0.11
Matches are distributed among these distances:
28 1 0.02
29 12 0.26
30 14 0.30
31 20 0.43
ACGTcount: A:0.41, C:0.05, G:0.23, T:0.32
Consensus pattern (28 bp):
AGAAAATTTAGGGGTCAAATGAAATTTA
Found at i:66792973 original size:82 final size:80
Alignment explanation
Indices: 66792620--66793958 Score: 717
Period size: 77 Copynumber: 16.8 Consensus size: 80
66792610 AAAAGCCAAA
*
66792620 AAATTG-AAAATACCTCAGCGTGTGACCTGAGGCTTAACTCACCTCTCGCAATATGAGTTGA--T
1 AAATTGAAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
66792682 TTTTTTGAAAAATAG
66 TTTTTTGAAAAATAG
* * *
66792697 AAATTGAAAAATACCTCGGCGTGTGA-CTCGAGGTTCAACTCATCTCTCGCAATATGAGTTGATT
1 AAATTGAAAAATACCTCAGCGTGTGACCT-GAGGCTCAACTCACCTCTCGCAATATGAGTTGA-T
*
66792761 TTTTTTTTGAAAAACAG
64 TTTTTTTTGAAAAATAG
* * ** * *
66792778 AAATTG-AAAATACCTCAGTGCGTGATTTGAGGCTCAACTCACCTCTCGTAATATGGGTTGA--T
1 AAATTGAAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
66792840 TTTTTTG-AAAATAG
66 TTTTTTGAAAAATAG
* * * * **
66792854 AAATTAAAAAATACCTCAGCGCGTGACCCGAGCCTCAACTCATGTCTCGCAATATGAGTTGATTT
1 AAATTGAAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--T
*
66792919 TTTTTTTTGAAAAACAG
64 TTTTTTTTGAAAAATAG
* * *
66792936 AAATTGAAAAATACCTCGGAGTGTGACCTGAGGCTCAACTCACCTCTCACAATATGAGTTGATTT
1 AAATTGAAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
66793001 TTTTTTGAAAAATAG
66 TTTTTTGAAAAATAG
* * * * *
66793016 AAATTAAAACAGAATTTGAAAAGACCTCGGCATGTG-GCTCGAGACTCAACTCACCTCTCGCAAT
1 AAATT------G-A----AAAATACCTCAGCGTGTGACCT-GAGGCTCAACTCACCTCTCGCAAT
** *
66793080 ATGAGTTGA-----TTTT-AACGACAG
54 ATGAGTTGATTTTTTTTTGAAAAATAG
** *
66793101 AAATTG-AAAATACCTCAGCGTGCAAGCC-AAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
1 AAATTGAAAAATACCTCAGCGTGTGA-CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-T
66793164 TTTTTTTTGAAAAATAG
64 TTTTTTTTGAAAAATAG
* * ** * * * * * *
66793181 AAATTAAAAACAGAATTTGAAAAGACCT-CGACATGTGGCCCGAGACTGAACTCACCTCT-GACA
1 AAATTGAAAA-A-TACCT---CAG-CGTGTGACCTGAGG--C---TC--AACTCACCTCTCG-CA
** *
66793244 ATATGAGTTGA----TTTTTGACGAACAG
52 ATATGAGTTGATTTTTTTTTGAAAAATAG
* * *
66793269 AAATTG-AAAATACCTCAGCGTATGAGCC-AAGGCTCAACTCACCTCTTGCAATATGAGTTGATT
1 AAATTGAAAAATACCTCAGCGTGTGA-CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
*** *
66793332 TTTTGACGAACAGAAATTG
65 TTTTTTTG-A-A-AAATAG
* * * * * *
66793351 AAAATAGATTTGAAAATACCTC-GACATGTGACCCGAGGCTCAACTCACATCTCACAATGTGAGT
1 -AAATTGA----AAAATACCTCAG-CGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGT
*
66793415 TGA---TTTTTTGAAAAATAT
60 TGATTTTTTTTTGAAAAATAG
* * * *
66793433 AAATTGAAAAAATACCTCAGTGTGTGATCTGAAGCTCAACTCACCTCTCGCAATATAAGTTGA--
1 AAATTG-AAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
* *
66793496 TTTTTTTGAAAGACAG
65 TTTTTTTGAAAAATAG
* * * *
66793512 AAATT-AAAAATAGCTCAGCGCGTGAGCC-AAGGCTCAACTCACCTCTCGCAATATGAGTCGA-T
1 AAATTGAAAAATACCTCAGCGTGTGA-CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
***
66793574 TTTTTTT-AAAGGCAG
65 TTTTTTTGAAAAATAG
** * * * ** * * *
66793589 AAATTGAAAAATGGAAATTGAAAATACCTCAGTG-TGTGA-CCTGAGGCTCAACTCTCCTCTCGC
1 AAATTGAAAAAT---ACCT---CA-GCGT--GTGACCTGAGGCTCA-ACTC-A--C-C-TCTCGC
* *
66793652 AATACGAGTTGA--TTTTTTTGACAACAT--
51 AATATGAGTTGATTTTTTTTTGA-AAAATAG
*
66793679 AAATTG-AAATTACCTCAGCGTGT--CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--T
1 AAATTGAAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
* *
66793739 TTTTTT-AAAGATAA
66 TTTTTTGAAAAATAG
* * **
66793753 AAATTG-AAAATACCTCAGCATGT--CTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA---
1 AAATTGAAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
* *
66793812 -ATTTTG-AAAACAG
66 TTTTTTGAAAAATAG
* * * * **
66793825 AAATTG-AAATTACCTCA--ATGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA---
1 AAATTGAAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
* *
66793884 --ATTTG--AAACAG
66 TTTTTTGAAAAATAG
* * **
66793895 AAATTG-AAAATACCTCAACGTGT--CTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTT
1 AAATTGAAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
66793957 TT
66 TT
66793959 GAAAAACATA
Statistics
Matches: 993, Mismatches: 165, Indels: 210
0.73 0.12 0.15
Matches are distributed among these distances:
70 62 0.06
71 4 0.00
72 67 0.07
73 45 0.05
74 78 0.08
75 26 0.03
76 13 0.01
77 121 0.12
78 107 0.11
79 32 0.03
80 84 0.08
81 42 0.04
82 76 0.08
83 10 0.01
84 2 0.00
85 21 0.02
86 18 0.02
87 13 0.01
88 60 0.06
89 5 0.01
90 16 0.02
91 64 0.06
92 3 0.00
93 24 0.02
ACGTcount: A:0.33, C:0.19, G:0.18, T:0.30
Consensus pattern (80 bp):
AAATTGAAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
TTTTTTGAAAAATAG
Found at i:66793235 original size:166 final size:165
Alignment explanation
Indices: 66792932--66793520 Score: 712
Period size: 166 Copynumber: 3.6 Consensus size: 165
66792922 TTTTTGAAAA
* * * *
66792932 ACAGAAATTGAAAAATACCTCGGAGTGTGA-CCTGAGGCTCAACTCACCTCTCACAATATGAGTT
1 ACAGAAATTG-AAAATACCTCAGCGTGTGAGCC-AAGGCTCAACTCACCTCTCGCAATATGAGTT
* *
66792996 GATTTTTTTTTGAAAAATAGAAATTAAAACAGAATTTGAAAAGACCTCGGCATGTGGCTCGAGAC
64 GATTTTTTTTTGAAAAATAGAAATTAAAACAGAATTTGAAAAGACCTCGACATGTGGCCCGAGAC
66793061 TCAACTCACCTCTCGCAATATGAGTTGA-TTTTAACG
129 TCAACTCACCTCTCGCAATATGAGTTGATTTTTAACG
**
66793097 ACAGAAATTGAAAATACCTCAGCGTGCAAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGA
1 ACAGAAATTGAAAATACCTCAGCGTGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGA
66793162 TTTTTTTTTTGAAAAATAGAAATTAAAAACAGAATTTGAAAAGACCTCGACATGTGGCCCGAGAC
66 -TTTTTTTTTGAAAAATAGAAATT-AAAACAGAATTTGAAAAGACCTCGACATGTGGCCCGAGAC
* *
66793227 TGAACTCACCTCT-GACAATATGAGTTGATTTTTGACG
129 TCAACTCACCTCTCG-CAATATGAGTTGATTTTTAACG
* *
66793264 AACAGAAATTGAAAATACCTCAGCGTATGAGCCAAGGCTCAACTCACCTCTTGCAATATGAGTTG
1 -ACAGAAATTGAAAATACCTCAGCGTGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTTG
** * * * * *
66793329 A---TTTTTTGACGAACAGAAATTGAAAATAG-ATTTGAAAATACCTCGACATGTGACCCGAGGC
65 ATTTTTTTTTGAAAAATAGAAATT-AAAACAGAATTTGAAAAGACCTCGACATGTGGCCCGAGAC
* * * **
66793390 TCAACTCACATCTCACAATGTGAGTTGATTTTTTGAAAA
129 TCAACTCACCTCTCGCAATATGAGTTGA-TTTTT-AACG
* * * * * *
66793429 ATATAAATTGAAAAAATACCTCAGTGTGTGATCTGAA-GCTCAACTCACCTCTCGCAATATAAGT
1 ACAGAAATTG--AAAATACCTCAGCGTGTGAGC-CAAGGCTCAACTCACCTCTCGCAATATGAGT
* *
66793493 TGA--TTTTTTTGAAAGACAGAAATTAAAA
63 TGATTTTTTTTTGAAAAATAGAAATTAAAA
66793521 ATAGCTCAGC
Statistics
Matches: 371, Mismatches: 40, Indels: 25
0.85 0.09 0.06
Matches are distributed among these distances:
163 52 0.14
164 82 0.22
165 37 0.10
166 113 0.30
167 26 0.07
168 61 0.16
ACGTcount: A:0.36, C:0.19, G:0.17, T:0.28
Consensus pattern (165 bp):
ACAGAAATTGAAAATACCTCAGCGTGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGA
TTTTTTTTTGAAAAATAGAAATTAAAACAGAATTTGAAAAGACCTCGACATGTGGCCCGAGACTC
AACTCACCTCTCGCAATATGAGTTGATTTTTAACG
Found at i:66793437 original size:88 final size:88
Alignment explanation
Indices: 66793272--66793442 Score: 218
Period size: 88 Copynumber: 1.9 Consensus size: 88
66793262 CGAACAGAAA
* * * **
66793272 TTGAAAATACCTCAGCGTATGAGCCAAGGCTCAACTCACCTCTTGCAATATGAGTTGATTTTTTG
1 TTGAAAATACCTCAGCATATGACCCAAGGCTCAACTCACATCTCACAATATGAGTTGATTTTTTG
**
66793337 ACGAACAGAAATTGAAAATAGAT
66 AAAAACAGAAATTGAAAATAGAT
* * *
66793360 TTGAAAATACCTC-GACATGTGACCCGAGGCTCAACTCACATCTCACAATGTGAGTTGATTTTTT
1 TTGAAAATACCTCAG-CATATGACCCAAGGCTCAACTCACATCTCACAATATGAGTTGATTTTTT
* *
66793424 GAAAAATATAAATTGAAAA
65 GAAAAACAGAAATTGAAAA
66793443 AATACCTCAG
Statistics
Matches: 70, Mismatches: 12, Indels: 2
0.83 0.14 0.02
Matches are distributed among these distances:
87 1 0.01
88 69 0.99
ACGTcount: A:0.36, C:0.18, G:0.17, T:0.29
Consensus pattern (88 bp):
TTGAAAATACCTCAGCATATGACCCAAGGCTCAACTCACATCTCACAATATGAGTTGATTTTTTG
AAAAACAGAAATTGAAAATAGAT
Found at i:66793555 original size:243 final size:241
Alignment explanation
Indices: 66793229--66793833 Score: 675
Period size: 243 Copynumber: 2.5 Consensus size: 241
66793219 CCCGAGACTG
* *
66793229 AACTCACCTCT-GACAATATGAGTTGA--TTTTTG-ACGAACAGAAATTGAAAATACCTCAGCGT
1 AACTCACCTCTCG-CAATATGAGTTGATTTTTTTGAAAG-ACAGAAATTGAAAATACCTCAGCGC
* *
66793290 ATGAGCCAAGGCTCAACTCACCTCTTGCAATATGAGTTGA-TTTTTTGACGAA-CAGAAATTG-A
64 ATGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTCGATTTTTTTGA--AAGCAGAAATTGAA
* **
66793352 AAATAG-ATTTGAAAATACCTC-GACATGTGACCCGAGGCTCAACTCACATCTCACAATGTGAGT
127 AAATAGAAATTGAAAATACCTCAG-CATGTGACCCGAGGCTCAACTCACATCTCACAATACGAGT
* * *
66793415 TGA-TTTTTTGAAAAATATAAATTGAAAAAATACCTCAGTGTGTGATCTGAAGCTC
191 TGATTTTTTTG-AAAACATAAATTG--AAAATACCTCAGCGTGT--CCTGAAGCTC
* * * *
66793470 AACTCACCTCTCGCAATATAAGTTGATTTTTTTGAAAGACAGAAATTAAAAATAGCTCAGCGCGT
1 AACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTGAAAATACCTCAGCGCAT
*
66793535 GAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTCGATTTTTTTTAAAGGCAGAAATTGAAAAA
66 GAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTCGATTTTTTTGAAA-GCAGAAATTGAAAAA
* ** * * * *
66793600 TGGAAATTGAAAATACCTCAGTGTGTGACCTGAGGCTCAACTCTCCTCTCGCAATACGAGTTGAT
130 TAGAAATTGAAAATACCTCAGCATGTGACCCGAGGCTCAACTCACATCTCACAATACGAGTTGAT
* * *
66793665 TTTTTTGACAACATAAATTGAAATTACCTCAGCGTGTCCTGAGGCTC
195 TTTTTTGAAAACATAAATTGAAAATACCTCAGCGTGTCCTGAAGCTC
* *
66793712 AACTCACCTCTCGCAATATGAGTTGATTTTTTT-AAAGATAAAAATTGAAAATACCTCA--GCAT
1 AACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTGAAAATACCTCAGCGCAT
* ** ** * * *
66793774 G-TCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA--ATTTTGAAAACAGAAATTGAAA
66 GAGC-CAAGGCTCAACTCACCTCTCGCAATATGAGTCGATTTTTTTGAAAGCAGAAATTGAAA
66793834 TTACCTCAAT
Statistics
Matches: 312, Mismatches: 40, Indels: 29
0.82 0.10 0.08
Matches are distributed among these distances:
236 12 0.04
237 7 0.02
238 1 0.00
239 33 0.11
241 44 0.14
242 43 0.14
243 65 0.21
244 33 0.11
245 6 0.02
246 60 0.19
247 8 0.03
ACGTcount: A:0.34, C:0.19, G:0.17, T:0.29
Consensus pattern (241 bp):
AACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTGAAAATACCTCAGCGCAT
GAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTCGATTTTTTTGAAAGCAGAAATTGAAAAAT
AGAAATTGAAAATACCTCAGCATGTGACCCGAGGCTCAACTCACATCTCACAATACGAGTTGATT
TTTTTGAAAACATAAATTGAAAATACCTCAGCGTGTCCTGAAGCTC
Found at i:66793650 original size:168 final size:165
Alignment explanation
Indices: 66793422--66793762 Score: 452
Period size: 168 Copynumber: 2.0 Consensus size: 165
66793412 AGTTGATTTT
* *
66793422 TTGAAAAATATAAATTGAAAAAATACCTCAGTGTGTGATCTGAAGCTCAACTCACCTCTCGCAAT
1 TTGAAAAATAGAAATTG-AAAAATACCTCAGTGTGTGACCTGAAGCTCAACTCACCTCTCGCAAT
* *
66793487 ATAAGTTGATTTTTTTGAAAGACAGAAATTAAAAATAGCTCAGCGCGTGAGCC-AAGGCTCAACT
65 ACAAGTTGATTTTTTTGAAA-ACAGAAATTAAAAATACCTCA--GCGTG-GCCTAAGGCTCAACT
* *
66793551 CACCTCTCGCAATATGAGTCGATTTTTTTTAAAGGCAGAAA
126 CACCTCTCGCAATATGAGTCGA-TTTTTTTAAAGACAAAAA
* * *
66793592 TTGAAAAATGGAAATTG-AAAATACCTCAGTGTGTGACCTGAGGCTCAACTCTCCTCTCGCAATA
1 TTGAAAAATAGAAATTGAAAAATACCTCAGTGTGTGACCTGAAGCTCAACTCACCTCTCGCAATA
* * * * * * *
66793656 CGAGTTGATTTTTTTGACAACATAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCT
66 CAAGTTGATTTTTTTGAAAACAGAAATTAAAAATACCTCAGCGTGGCCTAAGGCTCAACTCACCT
* *
66793721 CTCGCAATATGAGTTGATTTTTTTAAAGATAAAAA
131 CTCGCAATATGAGTCGATTTTTTTAAAGACAAAAA
66793756 TTGAAAA
1 TTGAAAA
66793763 TACCTCAGCA
Statistics
Matches: 152, Mismatches: 18, Indels: 8
0.85 0.10 0.04
Matches are distributed among these distances:
164 24 0.16
165 36 0.24
167 17 0.11
168 60 0.39
170 15 0.10
ACGTcount: A:0.35, C:0.18, G:0.17, T:0.30
Consensus pattern (165 bp):
TTGAAAAATAGAAATTGAAAAATACCTCAGTGTGTGACCTGAAGCTCAACTCACCTCTCGCAATA
CAAGTTGATTTTTTTGAAAACAGAAATTAAAAATACCTCAGCGTGGCCTAAGGCTCAACTCACCT
CTCGCAATATGAGTCGATTTTTTTAAAGACAAAAA
Found at i:66793860 original size:72 final size:72
Alignment explanation
Indices: 66793602--66793963 Score: 460
Period size: 74 Copynumber: 5.0 Consensus size: 72
66793592 TTGAAAAATG
* * * *
66793602 GAAATTGAAAATACCTCAGTGTGTGACCTGAGGCTCAACTC-TCCTCTCGCAATACGAGTTGATT
1 GAAATTGAAAATACCTCAGCGTGT--CTTGAGGCTCAACTCAT-TTCTCGCAATATGAGTTGA--
*
66793666 TTTTTGACAACA
61 TTTTTGAAAACA
* * * **
66793678 TAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
1 GAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA-TTTT
* *
66793743 TTAAAGATA
65 TGAAA-ACA
* * *
66793752 AAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTT
1 GAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTT
66793817 GAAAACA
66 GAAAACA
* ** *
66793824 GAAATTGAAATTACCTCAATGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA-ATTT
1 GAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTT
66793888 G-AAACA
66 GAAAACA
*
66793894 GAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTT
1 GAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTT
66793959 GAAAA
66 GAAAA
66793964 ACATAATTGA
Statistics
Matches: 256, Mismatches: 26, Indels: 12
0.87 0.09 0.04
Matches are distributed among these distances:
70 63 0.25
71 8 0.03
72 60 0.23
73 15 0.06
74 89 0.35
76 21 0.08
ACGTcount: A:0.32, C:0.19, G:0.17, T:0.32
Consensus pattern (72 bp):
GAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTT
GAAAACA
Found at i:66793972 original size:142 final size:143
Alignment explanation
Indices: 66793602--66793973 Score: 471
Period size: 142 Copynumber: 2.6 Consensus size: 143
66793592 TTGAAAAATG
* * * *
66793602 GAAATTGAAAATACCTCAGTGTGTGACCTGAGGCTCAACTC-TCCTCTCGCAATACGAGTTGATT
1 GAAATTGAAAATACCTCAGCGTGT--CTTGAGGCTCAACTCAT-TTCTCGCAATATGAGTTGA--
* *
66793666 TTTTTGACAACATAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATAT
61 TTTTTGAAAACAT-AATTGAAATTACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATAT
* *
66793731 GAGTTGATTTTTTTAAAGATA
125 GAGTTGA--TATTTAAAGACA
* * *
66793752 AAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTT
1 GAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTT
* * * **
66793817 GAAAACAGAAATTGAAATTACCTCAATGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTT
66 GAAAACA-TAATTGAAATTACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
*
66793882 GA-ATTTGAA-ACA
130 GATATTTAAAGACA
*
66793894 GAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTT
1 GAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTT
66793959 GAAAAACATAATTGA
66 G-AAAACATAATTGA
66793974 TTTTTGAAAA
Statistics
Matches: 197, Mismatches: 22, Indels: 14
0.85 0.09 0.06
Matches are distributed among these distances:
142 70 0.36
143 11 0.06
146 63 0.32
148 31 0.16
149 1 0.01
150 21 0.11
ACGTcount: A:0.33, C:0.19, G:0.17, T:0.32
Consensus pattern (143 bp):
GAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTT
GAAAACATAATTGAAATTACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
ATATTTAAAGACA
Found at i:66793984 original size:21 final size:21
Alignment explanation
Indices: 66793950--66793994 Score: 83
Period size: 20 Copynumber: 2.2 Consensus size: 21
66793940 GCAATATGAG
66793950 TTGATTTTTGAAAAACAT-AA
1 TTGATTTTTGAAAAACATAAA
66793970 TTGATTTTTGAAAAACATAAA
1 TTGATTTTTGAAAAACATAAA
66793991 TTGA
1 TTGA
66793995 ACAGAAATTG
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
20 18 0.75
21 6 0.25
ACGTcount: A:0.44, C:0.04, G:0.11, T:0.40
Consensus pattern (21 bp):
TTGATTTTTGAAAAACATAAA
Found at i:66794127 original size:178 final size:174
Alignment explanation
Indices: 66793820--66794141 Score: 504
Period size: 178 Copynumber: 1.8 Consensus size: 174
66793810 GAATTTTGAA
* * *
66793820 AACAGAAATTGAAATTACCTCAATGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAA
1 AACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACTTCTCGCAATATGAGTTGAA
66793885 TTTGAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAG
66 TTTGAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAG
*
66793950 TTGATTTTTGAAAAACATAATTGATTTTTGAAAAACATAAATTG
131 TTGAATTTTGAAAAACATAATTGATTTTTGAAAAACATAAATTG
*
66793994 AACAGAAATTGAAAATACCTCAACGTGTTTTGAGGCTCAACTCACCTT-TCGCAATATGAGTTGA
1 AACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCA-CTTCTCGCAATATGAGTTGA
* * *
66794058 TTTTTTGAAA-AGCGAAAATTGAAAATACCTCAATGTGTCTTGAGGCTCAACTCATTTCTCGTAA
65 --ATTTGAAACA--G-AAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAA
66794122 TATGAGTTGAATTTTGAAAA
125 TATGAGTTGAATTTTGAAAA
66794142 CAGAAATTGA
Statistics
Matches: 134, Mismatches: 8, Indels: 8
0.89 0.05 0.05
Matches are distributed among these distances:
174 57 0.43
175 3 0.02
176 7 0.05
177 1 0.01
178 66 0.49
ACGTcount: A:0.35, C:0.16, G:0.16, T:0.33
Consensus pattern (174 bp):
AACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACTTCTCGCAATATGAGTTGAA
TTTGAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAG
TTGAATTTTGAAAAACATAATTGATTTTTGAAAAACATAAATTG
Found at i:66794173 original size:72 final size:72
Alignment explanation
Indices: 66793994--66794220 Score: 334
Period size: 72 Copynumber: 3.1 Consensus size: 72
66793984 ACATAAATTG
* *
66793994 AACAGAAATTGAAAATACCTCAACGTGTTTTGAGGCTCAACTCACCTT-TCGCAATATGAGTTGA
1 AACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCA-TTTCTCGCAATATGAGTTGA
*
66794058 TTTTTTGAA
65 -ATTTTGAA
* *
66794067 AAGC-GAAAATTGAAAATACCTCAATGTGTCTTGAGGCTCAACTCATTTCTCGTAATATGAGTTG
1 AA-CAG-AAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTG
66794131 AATTTTGAA
64 AATTTTGAA
*
66794140 AACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAA
1 AACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAA
66794205 TTTTTG-A
66 -TTTTGAA
66794212 AACAGAAAT
1 AACAGAAAT
66794221 AAAAGCATTA
Statistics
Matches: 141, Mismatches: 8, Indels: 11
0.88 0.05 0.07
Matches are distributed among these distances:
72 68 0.48
73 20 0.14
74 53 0.38
ACGTcount: A:0.34, C:0.17, G:0.17, T:0.32
Consensus pattern (72 bp):
AACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAA
TTTTGAA
Found at i:66801393 original size:24 final size:24
Alignment explanation
Indices: 66801365--66801414 Score: 75
Period size: 24 Copynumber: 2.1 Consensus size: 24
66801355 ATGAAAGTTT
*
66801365 AATGCAAATG-ATGTAATGCAATGC
1 AATGCAAATGTATGGAATG-AATGC
66801389 AATGCAAATGTATGGAATGAATGC
1 AATGCAAATGTATGGAATGAATGC
66801413 AA
1 AA
66801415 AAAAGGAAGG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
24 17 0.71
25 7 0.29
ACGTcount: A:0.44, C:0.10, G:0.22, T:0.24
Consensus pattern (24 bp):
AATGCAAATGTATGGAATGAATGC
Found at i:66814913 original size:55 final size:55
Alignment explanation
Indices: 66814812--66814917 Score: 128
Period size: 55 Copynumber: 1.9 Consensus size: 55
66814802 CTCGTGTTAA
*
66814812 TTTAACAGGTTCGACCACGGGTGTTCCACATGGGCGTGTCGGACGCCCGTGCTGC
1 TTTAACAGGTTCGACCACGGGTGTTCCACACGGGCGTGTCGGACGCCCGTGCTGC
* * *
66814867 TTTAACAGGTTC-ACCCACGGTTCGTT-CATACGGGTGTGT-GGCACGCCCGTG
1 TTTAACAGGTTCGA-CCACGGGT-GTTCCACACGGGCGTGTCGG-ACGCCCGTG
66814918 TTGTTTTGGC
Statistics
Matches: 44, Mismatches: 4, Indels: 6
0.81 0.07 0.11
Matches are distributed among these distances:
54 3 0.07
55 38 0.86
56 3 0.07
ACGTcount: A:0.15, C:0.28, G:0.31, T:0.25
Consensus pattern (55 bp):
TTTAACAGGTTCGACCACGGGTGTTCCACACGGGCGTGTCGGACGCCCGTGCTGC
Found at i:66818750 original size:41 final size:41
Alignment explanation
Indices: 66818705--66818782 Score: 156
Period size: 41 Copynumber: 1.9 Consensus size: 41
66818695 TTCATTCCCT
66818705 TTAGGTATTTAGGGGATTTAGTTCATAACTAAATAAGCCCC
1 TTAGGTATTTAGGGGATTTAGTTCATAACTAAATAAGCCCC
66818746 TTAGGTATTTAGGGGATTTAGTTCATAACTAAATAAG
1 TTAGGTATTTAGGGGATTTAGTTCATAACTAAATAAG
66818783 AAAACATCTC
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 37 1.00
ACGTcount: A:0.33, C:0.10, G:0.21, T:0.36
Consensus pattern (41 bp):
TTAGGTATTTAGGGGATTTAGTTCATAACTAAATAAGCCCC
Found at i:66818910 original size:21 final size:21
Alignment explanation
Indices: 66818886--66818927 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
66818876 ATCCGACTTC
66818886 TGAGATGGATCAATCGGCTTT
1 TGAGATGGATCAATCGGCTTT
66818907 TGAGATGGATCAATCGGCTTT
1 TGAGATGGATCAATCGGCTTT
66818928 CTTGGAGTAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.24, C:0.14, G:0.29, T:0.33
Consensus pattern (21 bp):
TGAGATGGATCAATCGGCTTT
Found at i:66823145 original size:46 final size:45
Alignment explanation
Indices: 66823085--66823352 Score: 186
Period size: 46 Copynumber: 5.7 Consensus size: 45
66823075 GGGCTATTGT
* * *
66823085 GAGCTAGTGTAAGACATGTCTGGGACATGCATTGGCCACACTATGA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACA-GATGA
* *
66823131 GAGCCAATGTAAGACCATGTCTGGGACATGGCATCGG-CATTGAGATGA
1 GAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCA--CAGATGA
* * * * *
66823179 GTGCTAGTGTAAGACATGTCTGGGACATGCATCGACCTCGAGACGTA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCAC-AGATG-A
* * * *
66823226 -AGCCAGTGTAAGACATGTCTGGGACATGCATTGACTAC-GA-AA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACAGATGA
* * * *
66823268 GTGTCAGTGTAAGACCATGTATGGGACATGGCATC-GACACAGATATGCTA
1 GAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCACAG--ATG--A
**
66823318 GAGCTTGTGTAAGACCATGTCTGGGACATAGCATC
1 GAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATC
66823353 AGCACCTGCA
Statistics
Matches: 174, Mismatches: 32, Indels: 28
0.74 0.14 0.12
Matches are distributed among these distances:
42 1 0.01
43 11 0.06
44 17 0.10
45 5 0.03
46 55 0.32
47 33 0.19
48 21 0.12
49 1 0.01
50 30 0.17
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.23
Consensus pattern (45 bp):
GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACAGATGA
Found at i:66823342 original size:140 final size:140
Alignment explanation
Indices: 66823090--66823352 Score: 345
Period size: 137 Copynumber: 1.9 Consensus size: 140
66823080 ATTGTGAGCT
* * *
66823090 AGTGTAAGACATGTCTGGGACATGCATTGGCCACACTATGAGAGCCAATGTAAGACCATGTCTGG
1 AGTGTAAGACATGTCTGGGACATGCATTGG-CACACGATAAGAGCCAATGTAAGACCATGTATGG
* ** *
66823155 GACATGGCATCGGCATTGAGATGAGTGCTAGTGTAAGACATGTCTGGGACAT-GCATCGACCTCG
65 GACATGGCATCGACACAGAGATGAGAGCTAGTGTAAGACATGTCTGGGACATAGCATCGACCTCG
66823219 AGACGTAAGCC
130 AGACGTAAGCC
* * *
66823230 AGTGTAAGACATGTCTGGGACATGCATT-G-ACTACGA-AAGTGTCAGTGTAAGACCATGTATGG
1 AGTGTAAGACATGTCTGGGACATGCATTGGCAC-ACGATAAGAGCCAATGTAAGACCATGTATGG
* *
66823292 GACATGGCATCGACACAGATATGCTAGAGCTTGTGTAAGACCATGTCTGGGACATAGCATC
65 GACATGGCATCGACACAGAGATG--AGAGCTAGTGTAAGA-CATGTCTGGGACATAGCATC
66823353 AGCACCTGCA
Statistics
Matches: 106, Mismatches: 12, Indels: 9
0.83 0.09 0.07
Matches are distributed among these distances:
137 42 0.40
138 3 0.03
139 14 0.13
140 42 0.40
141 5 0.05
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.23
Consensus pattern (140 bp):
AGTGTAAGACATGTCTGGGACATGCATTGGCACACGATAAGAGCCAATGTAAGACCATGTATGGG
ACATGGCATCGACACAGAGATGAGAGCTAGTGTAAGACATGTCTGGGACATAGCATCGACCTCGA
GACGTAAGCC
Found at i:66827625 original size:48 final size:48
Alignment explanation
Indices: 66827504--66827628 Score: 154
Period size: 48 Copynumber: 2.6 Consensus size: 48
66827494 AGCTATCGGT
66827504 ACATAGTAGCCTG-ACTTAGTACTACACA-TGCACTAACAATCTGTAC
1 ACATAGTAGCCTGCACTTAGTACTACACAGTGCACTAACAATCTGTAC
*
66827550 ACGTAGTAGCCTGCACTTAGTACTACACAGTG-ACTAA-AACGTCT-TAAAC
1 ACATAGTAGCCTGCACTTAGTACTACACAGTGCACTAACAA--TCTGT--AC
*
66827599 ACATAG-AGCCTGCACATAGTACTACACAGT
1 ACATAGTAGCCTGCACTTAGTACTACACAGT
66827629 TTCTCACAAG
Statistics
Matches: 70, Mismatches: 3, Indels: 10
0.84 0.04 0.12
Matches are distributed among these distances:
46 14 0.20
47 21 0.30
48 28 0.40
49 7 0.10
ACGTcount: A:0.35, C:0.26, G:0.15, T:0.24
Consensus pattern (48 bp):
ACATAGTAGCCTGCACTTAGTACTACACAGTGCACTAACAATCTGTAC
Found at i:66829979 original size:25 final size:26
Alignment explanation
Indices: 66829940--66830027 Score: 92
Period size: 25 Copynumber: 3.4 Consensus size: 26
66829930 CCATGCGGCA
*
66829940 TAAGTGTGCGGTTTGACTT-GTAGCAC
1 TAAGTGTGCGATTTGA-TTAGTAGCAC
66829966 TAAG-GTGCGATTTG-TTACGTAGCAC
1 TAAGTGTGCGATTTGATTA-GTAGCAC
* *
66829991 TAAGTGTGCGAGTTGATTATATAGCAC
1 TAAGTGTGCGATTTGATTA-GTAGCAC
*
66830018 TGAGTGTGCG
1 TAAGTGTGCG
66830028 GACTCAATAT
Statistics
Matches: 53, Mismatches: 5, Indels: 7
0.82 0.08 0.11
Matches are distributed among these distances:
23 2 0.04
25 20 0.38
26 13 0.25
27 18 0.34
ACGTcount: A:0.23, C:0.14, G:0.31, T:0.33
Consensus pattern (26 bp):
TAAGTGTGCGATTTGATTAGTAGCAC
Found at i:66830023 original size:27 final size:26
Alignment explanation
Indices: 66829960--66830027 Score: 84
Period size: 27 Copynumber: 2.6 Consensus size: 26
66829950 GTTTGACTTG
* *
66829960 TAGCACTAAG-GTGCGATTTGTTACG
1 TAGCACTAAGTGTGCGAGTTGTTACA
*
66829985 TAGCACTAAGTGTGCGAGTTGATTATA
1 TAGCACTAAGTGTGCGAGTTG-TTACA
*
66830012 TAGCACTGAGTGTGCG
1 TAGCACTAAGTGTGCG
66830028 GACTCAATAT
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
25 10 0.27
26 9 0.24
27 18 0.49
ACGTcount: A:0.25, C:0.15, G:0.29, T:0.31
Consensus pattern (26 bp):
TAGCACTAAGTGTGCGAGTTGTTACA
Found at i:66832786 original size:14 final size:15
Alignment explanation
Indices: 66832760--66832790 Score: 55
Period size: 14 Copynumber: 2.1 Consensus size: 15
66832750 TATTAAGTTG
66832760 ATTTTGTTTTTCAAA
1 ATTTTGTTTTTCAAA
66832775 ATTTTG-TTTTCAAA
1 ATTTTGTTTTTCAAA
66832789 AT
1 AT
66832791 AAATGACTTC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 10 0.62
15 6 0.38
ACGTcount: A:0.29, C:0.06, G:0.06, T:0.58
Consensus pattern (15 bp):
ATTTTGTTTTTCAAA
Found at i:66840061 original size:15 final size:16
Alignment explanation
Indices: 66840041--66840073 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
66840031 TAGTTCGGCT
66840041 AAGGAG-AGGGGAAGA
1 AAGGAGTAGGGGAAGA
*
66840056 AAGGAGTAGGTGAAGA
1 AAGGAGTAGGGGAAGA
66840072 AA
1 AA
66840074 ATAAATAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 6 0.38
16 10 0.62
ACGTcount: A:0.48, C:0.00, G:0.45, T:0.06
Consensus pattern (16 bp):
AAGGAGTAGGGGAAGA
Found at i:66841472 original size:45 final size:45
Alignment explanation
Indices: 66841410--66841499 Score: 162
Period size: 45 Copynumber: 2.0 Consensus size: 45
66841400 AAATGGTTAT
*
66841410 TAATCCATTTTTATTTATGTTAATAGTGGGTAATGATGATGATGG
1 TAATCCATTTTTATTTATGTTAATAGTAGGTAATGATGATGATGG
*
66841455 TAATCCATTTTTCTTTATGTTAATAGTAGGTAATGATGATGATGG
1 TAATCCATTTTTATTTATGTTAATAGTAGGTAATGATGATGATGG
66841500 CCATTAAATG
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
45 43 1.00
ACGTcount: A:0.29, C:0.06, G:0.21, T:0.44
Consensus pattern (45 bp):
TAATCCATTTTTATTTATGTTAATAGTAGGTAATGATGATGATGG
Found at i:66845017 original size:39 final size:39
Alignment explanation
Indices: 66844955--66845043 Score: 124
Period size: 39 Copynumber: 2.3 Consensus size: 39
66844945 GAAATGGTAT
** * *
66844955 AACTACTCCTATTTTCCCTCTACTTCCTATAATATAGAA
1 AACTACTCCTATTCACCCCCTACTTCCTATAATATAAAA
*
66844994 AACTACTCTTATTCACCCCCTACTTCCTATAATATAAAA
1 AACTACTCCTATTCACCCCCTACTTCCTATAATATAAAA
*
66845033 AATTACTCCTA
1 AACTACTCCTA
66845044 AAATAAATTA
Statistics
Matches: 43, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
39 43 1.00
ACGTcount: A:0.34, C:0.29, G:0.01, T:0.36
Consensus pattern (39 bp):
AACTACTCCTATTCACCCCCTACTTCCTATAATATAAAA
Found at i:66848148 original size:17 final size:17
Alignment explanation
Indices: 66848107--66848139 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
66848097 ACAATAATAT
66848107 AAAATA-ATGATATGTAC
1 AAAATATAT-ATATGTAC
66848124 AAAATATATATATGTA
1 AAAATATATATATGTA
66848140 TATAATATAG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 13 0.87
18 2 0.13
ACGTcount: A:0.55, C:0.03, G:0.09, T:0.33
Consensus pattern (17 bp):
AAAATATATATATGTAC
Found at i:66848388 original size:15 final size:16
Alignment explanation
Indices: 66848370--66848404 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
66848360 GTTTTTTTTT
66848370 AATTTTT-TTAAGACC
1 AATTTTTGTTAAGACC
*
66848385 AATTTTTGTTTAGACC
1 AATTTTTGTTAAGACC
66848401 AATT
1 AATT
66848405 ACAAATAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 7 0.39
16 11 0.61
ACGTcount: A:0.31, C:0.11, G:0.09, T:0.49
Consensus pattern (16 bp):
AATTTTTGTTAAGACC
Found at i:66848968 original size:14 final size:14
Alignment explanation
Indices: 66848950--66849000 Score: 86
Period size: 14 Copynumber: 3.7 Consensus size: 14
66848940 TTATTGGTTT
66848950 TTTTTTTGCTGGAA
1 TTTTTTTGCTGGAA
*
66848964 ATTTTTTGCTGGAA
1 TTTTTTTGCTGGAA
66848978 TTTTTTTGCTGG-A
1 TTTTTTTGCTGGAA
66848991 TTTTTTTGCT
1 TTTTTTTGCT
66849001 CTTTTTTCTC
Statistics
Matches: 35, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
13 11 0.31
14 24 0.69
ACGTcount: A:0.12, C:0.08, G:0.20, T:0.61
Consensus pattern (14 bp):
TTTTTTTGCTGGAA
Found at i:66849256 original size:29 final size:28
Alignment explanation
Indices: 66849208--66849295 Score: 79
Period size: 30 Copynumber: 3.0 Consensus size: 28
66849198 ACTCCTGGGG
*
66849208 CTAAATGTAATTTTTAGAAAATTTAGGGT
1 CTAAATGTAA-TTTAAGAAAATTTAGGGT
*
66849237 -TAAAATGTAATTTAAGGAAAGTTTAGGGGT
1 CT-AAATGTAATTTAA-GAAAATTTA-GGGT
* *
66849267 CTAAGTGAAATTTAAAGAAAATTTTAGGG
1 CTAAATGTAATTT-AAGAAAA-TTTAGGG
66849296 GTCACAATGC
Statistics
Matches: 48, Mismatches: 5, Indels: 11
0.75 0.08 0.17
Matches are distributed among these distances:
28 5 0.10
29 16 0.33
30 20 0.42
31 7 0.15
ACGTcount: A:0.41, C:0.02, G:0.22, T:0.35
Consensus pattern (28 bp):
CTAAATGTAATTTAAGAAAATTTAGGGT
Found at i:66849310 original size:31 final size:28
Alignment explanation
Indices: 66849223--66849310 Score: 77
Period size: 31 Copynumber: 3.0 Consensus size: 28
66849213 TGTAATTTTT
* * *
66849223 AGAAAATTTAGGGTTAAAATGTAATTTA
1 AGAAAATTTAGGGGTCAAATGAAATTTA
* *
66849251 AGGAAAGTTTAGGGGTCTAAGTGAAATTTAA
1 A-GAAAATTTAGGGGTC-AAATGAAATTT-A
*
66849282 AGAAAATTTTAGGGGTCACAATGCAATTT
1 AGAAAA-TTTAGGGGTCA-AATGAAATTT
66849311 TTTATTTTTT
Statistics
Matches: 47, Mismatches: 8, Indels: 7
0.76 0.13 0.11
Matches are distributed among these distances:
28 1 0.02
29 12 0.26
30 14 0.30
31 20 0.43
ACGTcount: A:0.41, C:0.05, G:0.23, T:0.32
Consensus pattern (28 bp):
AGAAAATTTAGGGGTCAAATGAAATTTA
Found at i:66849920 original size:82 final size:80
Alignment explanation
Indices: 66849566--66850912 Score: 739
Period size: 79 Copynumber: 16.8 Consensus size: 80
66849556 AAAAGCCAAA
*
66849566 AAATTG-AAAATACCTCAGCGTGTGACCTGAGGCTTAACTCACCTCTCGCAATATGAGTTGA-TT
1 AAATTGAAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
66849629 TTTTTTGAAAAATAG
66 TTTTTTGAAAAATAG
* * *
66849644 AAATTGAAAAATACCTCGGCGTGTGA-CTCGAGGTTCAACTCATCTCTCGCAATATGAGTTGATT
1 AAATTGAAAAATACCTCAGCGTGTGACCT-GAGGCTCAACTCACCTCTCGCAATATGAGTTGA-T
*
66849708 TTTTTTTTGAAAAACAG
64 TTTTTTTTGAAAAATAG
* * ** * *
66849725 AAATTG-AAAATACCTCAGTGCGTGATTTGAGGCTCAACTCACCTCTCGTAATATGGGTTGA--T
1 AAATTGAAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
66849787 TTTTTTG-AAAATAG
66 TTTTTTGAAAAATAG
* * * * **
66849801 AAATTAAAAAATACCTCAGCGCGTGACCCGAGCCTCAACTCATGTCTCGCAATATGAGTTGATTT
1 AAATTGAAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--T
*
66849866 TTTTTTTTGAAAAACAG
64 TTTTTTTTGAAAAATAG
* * *
66849883 AAATTGAAAAATACCTCGGAGTGTGACCTGAGGCTCAACTCACCTCTCACAATATGAGTTGATTT
1 AAATTGAAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
66849948 TTTTTTGAAAAATAG
66 TTTTTTGAAAAATAG
* * ** * * ** *
66849963 AAATTAAAAACAGAATTTGAAAAGACCTCGGCATGTGGCTCGAGACTCAACTCACCTCTCGCAAT
1 AAATTGAAAA-A-TACCT---CAG-CGT--G--TG-ACCT-GAGGCTCAACTCACCTCTCGCAAT
* *
66850028 ATGAGTTGA----TTTTT-AACGAACAG
54 ATGAGTTGATTTTTTTTTGAA-AAATAG
** *
66850051 AAATTG-AAAATACCTCAGCGTGCAAGCC-AAGGCTCAACTCACCTCTCGCAATATGAGTTGA-T
1 AAATTGAAAAATACCTCAGCGTGTGA-CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
66850113 TTTTTTTGAAAAATAG
65 TTTTTTTGAAAAATAG
* * ** * * * * * *
66850129 AAATTAAAAACAGAATTTGAAAAGACCT-CGACATGTGGCCCGAGACTGAACTCACCTCT-GACA
1 AAATTGAAAA-A-TACCT---CAG-CGTGTGACCTGAGG--C---TC--AACTCACCTCTCG-CA
** *
66850192 ATATGAGTTGA----TTTTTGACGAACAG
52 ATATGAGTTGATTTTTTTTTGAAAAATAG
* * *
66850217 AAATTG-AAAATACCTCAGCGTATGAGCC-AAGGCTCAACTCACCTCTTGCAATATGAGTTGATT
1 AAATTGAAAAATACCTCAGCGTGTGA-CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
** *
66850280 TTTTTGACGAACAGAAATTG
65 TTTTT-TTG-A-A-AAATAG
* * * * * *
66850300 AAAATAGATTTTGAAAATACCTC-GACATGTGACCCGAGGCTCAACTCACATCTCACAATGTGAG
1 -AAATTGA-----AAAATACCTCAG-CGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
*
66850364 TTGA--TTTTTTTGAAAAATAT
59 TTGATTTTTTTTTGAAAAATAG
* * * *
66850384 AAATTGAAAAAATACCTCAGTGTGTGATCTGAAGCTCAACTCACCTCTCGCAATATAAGTTGA--
1 AAATTG-AAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
* *
66850447 TTTTTTTGAAAGACAG
65 TTTTTTTGAAAAATAG
* * * *
66850463 AAATT-AAAAATAGCTCAGCGCGTGAGCC-AAGGCTCAACTCACCTCTCGCAATATGAGTCGATT
1 AAATTGAAAAATACCTCAGCGTGTGA-CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
***
66850526 TTTTTTT-AAAGGCAG
65 TTTTTTTGAAAAATAG
** * * * ** * * *
66850541 AAATTGAAAAATGGAAATTGAAAATACCTCAGTG-TGTGA-CCTGAGGCTCAACTCTCCTCTCGC
1 AAATTGAAAAAT---ACCT---CA-GCGT--GTGACCTGAGGCTCA-ACTC-A--C-C-TCTCGC
* *
66850604 AATACGAGTTGA--TTTTTTTGACAACAT--
51 AATATGAGTTGATTTTTTTTTGA-AAAATAG
*
66850631 AAATTG-AAATTACCTCAGCGTGT--CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--T
1 AAATTGAAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
* *
66850691 TTTTTT-AAAGATAA
66 TTTTTTGAAAAATAG
* * **
66850705 AAATTG-AAAATACCTCAGCATGT--CTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA---
1 AAATTGAAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
* *
66850764 -ATTTTG-AAAACAG
66 TTTTTTGAAAAATAG
* * * * **
66850777 AAATTG-AAATTACCTCA--ATGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA---
1 AAATTGAAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
* *
66850836 -ATTTTG-AAAACAG
66 TTTTTTGAAAAATAG
* * **
66850849 AAATTG-AAAATACCTCAACGTGT--CTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTT
1 AAATTGAAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
66850911 TT
66 TT
66850913 GAAAAACATA
Statistics
Matches: 997, Mismatches: 171, Indels: 204
0.73 0.12 0.15
Matches are distributed among these distances:
70 4 0.00
72 129 0.13
73 1 0.00
74 81 0.08
75 56 0.06
76 13 0.01
77 102 0.10
78 36 0.04
79 138 0.14
80 80 0.08
81 39 0.04
82 73 0.07
83 11 0.01
84 16 0.02
85 9 0.01
86 11 0.01
87 13 0.01
88 40 0.04
89 8 0.01
90 60 0.06
91 28 0.03
92 49 0.05
ACGTcount: A:0.33, C:0.19, G:0.17, T:0.30
Consensus pattern (80 bp):
AAATTGAAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
TTTTTTGAAAAATAG
Found at i:66850166 original size:166 final size:166
Alignment explanation
Indices: 66849878--66850472 Score: 761
Period size: 166 Copynumber: 3.6 Consensus size: 166
66849868 TTTTTTGAAA
* * * *
66849878 AACAGAAATTGAAAAATACCTCGGAGTGTGA-CCTGAGGCTCAACTCACCTCTCACAATATGAGT
1 AACAGAAATTGAAAAATACCTCAGCGTGTGAGCC-AAGGCTCAACTCACCTCTCGCAATATGAGT
* * *
66849942 TGATTTTTTTTTGAAAAATAGAAATTAAAAACAGAATTTGAAAAGACCTCGGCATGTGGCTCGAG
65 TGA--TTTTTTTGAAAAACAGAAATTAAAAACAGAATTTGAAAAGACCTCGACATGTGGCCCGAG
66850007 ACTCAACTCACCTCTCGCAATATGAGTTGATTTTTAACG
128 ACTCAACTCACCTCTCGCAATATGAGTTGATTTTTAACG
**
66850046 AACAGAAATTG-AAAATACCTCAGCGTGCAAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTT
1 AACAGAAATTGAAAAATACCTCAGCGTGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTT
*
66850110 GATTTTTTTTGAAAAATAGAAATTAAAAACAGAATTTGAAAAGACCTCGACATGTGGCCCGAGAC
66 GA-TTTTTTTGAAAAACAGAAATTAAAAACAGAATTTGAAAAGACCTCGACATGTGGCCCGAGAC
* *
66850175 TGAACTCACCTCT-GACAATATGAGTTGATTTTTGACG
130 TCAACTCACCTCTCG-CAATATGAGTTGATTTTTAACG
* *
66850212 AACAGAAATTG-AAAATACCTCAGCGTATGAGCCAAGGCTCAACTCACCTCTTGCAATATGAGTT
1 AACAGAAATTGAAAAATACCTCAGCGTGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTT
** * * * * * *
66850276 GATTTTTTTGACGAACAGAAATTGAAAATAGATTTTGAAAATACCTCGACATGTGACCCGAGGCT
66 GATTTTTTTGAAAAACAGAAATTAAAAACAGAATTTGAAAAGACCTCGACATGTGGCCCGAGACT
* * * *
66850341 CAACTCACATCTCACAATGTGAGTTGATTTTTTTGAA-A
131 CAACTCACCTCTCGCAATATGAGTTGA--TTTTT-AACG
* * * * * *
66850379 AATATAAATTGAAAAAATACCTCAGTGTGTGATCTGAA-GCTCAACTCACCTCTCGCAATATAAG
1 AACAGAAATTG-AAAAATACCTCAGCGTGTGAGC-CAAGGCTCAACTCACCTCTCGCAATATGAG
*
66850443 TTGATTTTTTTGAAAGACAGAAATTAAAAA
64 TTGATTTTTTTGAAAAACAGAAATTAAAAA
66850473 TAGCTCAGCG
Statistics
Matches: 377, Mismatches: 41, Indels: 17
0.87 0.09 0.04
Matches are distributed among these distances:
165 77 0.20
166 156 0.41
167 60 0.16
168 14 0.04
169 68 0.18
170 2 0.01
ACGTcount: A:0.36, C:0.19, G:0.17, T:0.28
Consensus pattern (166 bp):
AACAGAAATTGAAAAATACCTCAGCGTGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTT
GATTTTTTTGAAAAACAGAAATTAAAAACAGAATTTGAAAAGACCTCGACATGTGGCCCGAGACT
CAACTCACCTCTCGCAATATGAGTTGATTTTTAACG
Found at i:66850388 original size:90 final size:90
Alignment explanation
Indices: 66850220--66850393 Score: 224
Period size: 90 Copynumber: 1.9 Consensus size: 90
66850210 CGAACAGAAA
* * * **
66850220 TTGAAAATACCTCAGCGTATGAGCCAAGGCTCAACTCACCTCTTGCAATATGAGTTGATTTTTTT
1 TTGAAAATACCTCAGCATATGACCCAAGGCTCAACTCACATCTCACAATATGAGTTGATTTTTTT
**
66850285 GACGAACAGAAATTGAAAATAGATT
66 GAAAAACAGAAATTGAAAATAGATT
* * *
66850310 TTGAAAATACCTC-GACATGTGACCCGAGGCTCAACTCACATCTCACAATGTGAGTTGATTTTTT
1 TTGAAAATACCTCAG-CATATGACCCAAGGCTCAACTCACATCTCACAATATGAGTTGATTTTTT
* *
66850374 TGAAAAATATAAATTGAAAA
65 TGAAAAACAGAAATTGAAAA
66850394 AATACCTCAG
Statistics
Matches: 71, Mismatches: 12, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
89 1 0.01
90 70 0.99
ACGTcount: A:0.36, C:0.18, G:0.17, T:0.30
Consensus pattern (90 bp):
TTGAAAATACCTCAGCATATGACCCAAGGCTCAACTCACATCTCACAATATGAGTTGATTTTTTT
GAAAAACAGAAATTGAAAATAGATT
Found at i:66850567 original size:169 final size:167
Alignment explanation
Indices: 66850373--66850696 Score: 454
Period size: 169 Copynumber: 1.9 Consensus size: 167
66850363 GTTGATTTTT
* *
66850373 TTGAAAAATATAAATTGAAAAAATACCTCAGTGTGTGATCTGAAGCTCAACTCACCTCTCGCAAT
1 TTGAAAAATAGAAATTG-AAAAATACCTCAGTGTGTGACCTGAAGCTCAACTCACCTCTCGCAAT
* *
66850438 ATAAGTTGATTTTTTTGAAAGACAGAAATTAAAAATAGCTCAGCGCGTGAGCC-AAGGCTCAACT
65 ACAAGTTGATTTTTTTGAAA-ACAGAAATTAAAAATACCTCA--GCGTG-GCCTAAGGCTCAACT
66850502 CACCTCTCGCAATATGAGTCGATTTTTTTTTAAAGGCAGAAA
126 CACCTCTCGCAATATGAGTCGATTTTTTTTTAAAGGCAGAAA
* * *
66850544 TTGAAAAATGGAAATTG-AAAATACCTCAGTGTGTGACCTGAGGCTCAACTCTCCTCTCGCAATA
1 TTGAAAAATAGAAATTGAAAAATACCTCAGTGTGTGACCTGAAGCTCAACTCACCTCTCGCAATA
* * * * * * *
66850608 CGAGTTGATTTTTTTGACAACATAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCT
66 CAAGTTGATTTTTTTGAAAACAGAAATTAAAAATACCTCAGCGTGGCCTAAGGCTCAACTCACCT
*
66850673 CTCGCAATATGAGTTGATTTTTTT
131 CTCGCAATATGAGTCGATTTTTTT
66850697 AAAGATAAAA
Statistics
Matches: 137, Mismatches: 15, Indels: 7
0.86 0.09 0.04
Matches are distributed among these distances:
165 2 0.01
166 43 0.31
168 17 0.12
169 60 0.44
171 15 0.11
ACGTcount: A:0.33, C:0.19, G:0.17, T:0.31
Consensus pattern (167 bp):
TTGAAAAATAGAAATTGAAAAATACCTCAGTGTGTGACCTGAAGCTCAACTCACCTCTCGCAATA
CAAGTTGATTTTTTTGAAAACAGAAATTAAAAATACCTCAGCGTGGCCTAAGGCTCAACTCACCT
CTCGCAATATGAGTCGATTTTTTTTTAAAGGCAGAAA
Found at i:66850812 original size:72 final size:72
Alignment explanation
Indices: 66850554--66850917 Score: 478
Period size: 72 Copynumber: 5.0 Consensus size: 72
66850544 TTGAAAAATG
* * * *
66850554 GAAATTGAAAATACCTCAGTGTGTGACCTGAGGCTCAACTC-TCCTCTCGCAATACGAGTTGATT
1 GAAATTGAAAATACCTCAGCGTGT--CTTGAGGCTCAACTCAT-TTCTCGCAATATGAGTTGA--
*
66850618 TTTTTGACAACA
61 TTTTTGAAAACA
* * * **
66850630 TAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
1 GAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA-TTTT
* *
66850695 TTAAAGATA
65 TGAAA-ACA
* * *
66850704 AAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTT
1 GAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTT
66850769 GAAAACA
66 GAAAACA
* ** *
66850776 GAAATTGAAATTACCTCAATGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTT
1 GAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTT
66850841 GAAAACA
66 GAAAACA
*
66850848 GAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTT
1 GAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTT
66850913 GAAAA
66 GAAAA
66850918 ACATAATTGA
Statistics
Matches: 261, Mismatches: 25, Indels: 8
0.89 0.09 0.03
Matches are distributed among these distances:
72 136 0.52
73 15 0.06
74 89 0.34
76 21 0.08
ACGTcount: A:0.32, C:0.19, G:0.17, T:0.32
Consensus pattern (72 bp):
GAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTT
GAAAACA
Found at i:66850938 original size:21 final size:21
Alignment explanation
Indices: 66850904--66850948 Score: 83
Period size: 20 Copynumber: 2.2 Consensus size: 21
66850894 GCAATATGAG
66850904 TTGATTTTTGAAAAACAT-AA
1 TTGATTTTTGAAAAACATAAA
66850924 TTGATTTTTGAAAAACATAAA
1 TTGATTTTTGAAAAACATAAA
66850945 TTGA
1 TTGA
66850949 ACAGAAATTG
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
20 18 0.75
21 6 0.25
ACGTcount: A:0.44, C:0.04, G:0.11, T:0.40
Consensus pattern (21 bp):
TTGATTTTTGAAAAACATAAA
Found at i:66851081 original size:178 final size:176
Alignment explanation
Indices: 66850772--66851095 Score: 526
Period size: 178 Copynumber: 1.8 Consensus size: 176
66850762 GAATTTTGAA
* * *
66850772 AACAGAAATTGAAATTACCTCAATGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAA
1 AACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACTTCTCGCAATATGAGTTGAA
66850837 TTTTGAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATG
66 TTTTGAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATG
*
66850902 AGTTGATTTTTGAAAAACATAATTGATTTTTGAAAAACATAAATTG
131 AGTTGAATTTTGAAAAACATAATTGATTTTTGAAAAACATAAATTG
*
66850948 AACAGAAATTGAAAATACCTCAACGTGTTTTGAGGCTCAACTCACCTT-TCGCAATATGAGTTGA
1 AACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCA-CTTCTCGCAATATGAGTTGA
* * *
66851012 TTTTTTGAAAAGC-GAAAATTGAAAATACCTCAATGTGTCTTGAGGCTCAACTCATTTCTCGTAA
65 -ATTTTGAAAA-CAG-AAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAA
66851076 TATGAGTTGAATTTTGAAAA
127 TATGAGTTGAATTTTGAAAA
66851096 CAGAAATTGA
Statistics
Matches: 136, Mismatches: 8, Indels: 6
0.91 0.05 0.04
Matches are distributed among these distances:
176 57 0.42
177 12 0.09
178 67 0.49
ACGTcount: A:0.35, C:0.16, G:0.16, T:0.33
Consensus pattern (176 bp):
AACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACTTCTCGCAATATGAGTTGAA
TTTTGAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATG
AGTTGAATTTTGAAAAACATAATTGATTTTTGAAAAACATAAATTG
Found at i:66851127 original size:72 final size:72
Alignment explanation
Indices: 66850948--66851174 Score: 334
Period size: 72 Copynumber: 3.1 Consensus size: 72
66850938 ACATAAATTG
* *
66850948 AACAGAAATTGAAAATACCTCAACGTGTTTTGAGGCTCAACTCACCTT-TCGCAATATGAGTTGA
1 AACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCA-TTTCTCGCAATATGAGTTGA
*
66851012 TTTTTTGAA
65 -ATTTTGAA
* *
66851021 AAGC-GAAAATTGAAAATACCTCAATGTGTCTTGAGGCTCAACTCATTTCTCGTAATATGAGTTG
1 AA-CAG-AAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTG
66851085 AATTTTGAA
64 AATTTTGAA
*
66851094 AACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAA
1 AACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAA
66851159 TTTTTG-A
66 -TTTTGAA
66851166 AACAGAAAT
1 AACAGAAAT
66851175 AAAAGCATTA
Statistics
Matches: 141, Mismatches: 8, Indels: 11
0.88 0.05 0.07
Matches are distributed among these distances:
72 68 0.48
73 20 0.14
74 53 0.38
ACGTcount: A:0.34, C:0.17, G:0.17, T:0.32
Consensus pattern (72 bp):
AACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAA
TTTTGAA
Found at i:66851144 original size:250 final size:249
Alignment explanation
Indices: 66850705--66851167 Score: 797
Period size: 250 Copynumber: 1.9 Consensus size: 249
66850695 TTAAAGATAA
* *
66850705 AAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTG
1 AAATTGAAAATACCTCAACATGTCTTGAGGCTCAACTCACTTCTCGCAATATGAGTTGAATTTTG
*
66850770 AAAACAGAAATTGAAATTACCTCAATGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTG
66 AAAACAGAAATTGAAAATACCTCAATGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTG
66850835 AATTTTGAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATA
131 AATTTTGAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATA
66850900 TGAGTTG-ATTTTTGAAAAACATAATTGATTTTTGAAAAACATAAATTGAACAG
196 TGAGTTGAATTTTTGAAAAACATAATTGATTTTTGAAAAACATAAATTGAACAG
* * *
66850953 AAATTGAAAATACCTCAACGTGTTTTGAGGCTCAACTCACCTT-TCGCAATATGAGTTGATTTTT
1 AAATTGAAAATACCTCAACATGTCTTGAGGCTCAACTCA-CTTCTCGCAATATGAGTTGA-ATTT
*
66851017 TGAAAAGC-GAAAATTGAAAATACCTCAATGTGTCTTGAGGCTCAACTCATTTCTCGTAATATGA
64 TGAAAA-CAG-AAATTGAAAATACCTCAATGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGA
*
66851081 GTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGC
127 GTTGAATTTTGAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGC
66851146 AATATGAGTTGAATTTTTGAAA
192 AATATGAGTTGAATTTTTGAAA
66851168 CAGAAATAAA
Statistics
Matches: 202, Mismatches: 8, Indels: 7
0.93 0.04 0.03
Matches are distributed among these distances:
248 52 0.26
249 12 0.06
250 128 0.63
251 10 0.05
ACGTcount: A:0.35, C:0.16, G:0.16, T:0.33
Consensus pattern (249 bp):
AAATTGAAAATACCTCAACATGTCTTGAGGCTCAACTCACTTCTCGCAATATGAGTTGAATTTTG
AAAACAGAAATTGAAAATACCTCAATGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTG
AATTTTGAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATA
TGAGTTGAATTTTTGAAAAACATAATTGATTTTTGAAAAACATAAATTGAACAG
Found at i:66858528 original size:24 final size:24
Alignment explanation
Indices: 66858500--66858549 Score: 75
Period size: 24 Copynumber: 2.1 Consensus size: 24
66858490 ATGAAAGTTT
*
66858500 AATGCAAATG-ATGTAATGCAATGC
1 AATGCAAATGTATGGAATG-AATGC
66858524 AATGCAAATGTATGGAATGAATGC
1 AATGCAAATGTATGGAATGAATGC
66858548 AA
1 AA
66858550 AAAAGGAAGG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
24 17 0.71
25 7 0.29
ACGTcount: A:0.44, C:0.10, G:0.22, T:0.24
Consensus pattern (24 bp):
AATGCAAATGTATGGAATGAATGC
Found at i:66861348 original size:40 final size:40
Alignment explanation
Indices: 66861297--66861488 Score: 280
Period size: 40 Copynumber: 4.8 Consensus size: 40
66861287 GGATATAGCC
*
66861297 ACTCGCTCAAATGCCTTCGGGACTTAGCCCGG-ATACAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAAT-CAGTA
**
66861337 GTTCGCACAAATGCCTTCGGGACTTAGCCCGGATAT-AGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGA-ATCAGTA
*
66861377 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATCAGTA
* *
66861417 ACTCGCACAAATGCCTTTGGGACTTAGCCCGGAATCAGTC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATCAGTA
* *
66861457 ACTAGCACAAATGCCTTCGGGACTTAACCCGG
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG
66861489 TTATCATCCG
Statistics
Matches: 138, Mismatches: 11, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
39 2 0.01
40 134 0.97
42 2 0.01
ACGTcount: A:0.26, C:0.29, G:0.23, T:0.22
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATCAGTA
Found at i:66864402 original size:17 final size:17
Alignment explanation
Indices: 66864360--66864402 Score: 68
Period size: 17 Copynumber: 2.5 Consensus size: 17
66864350 ACAACAATAA
66864360 TATAAAATAATGATATG
1 TATAAAATAATGATATG
*
66864377 TACAAAATAATGATATG
1 TATAAAATAATGATATG
*
66864394 TATATAATA
1 TATAAAATA
66864403 TAGTTATAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.53, C:0.02, G:0.09, T:0.35
Consensus pattern (17 bp):
TATAAAATAATGATATG
Found at i:66864641 original size:15 final size:16
Alignment explanation
Indices: 66864621--66864654 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
66864611 ATTTTTTTTT
66864621 ATTTTT-TTAAGACCA
1 ATTTTTGTTAAGACCA
*
66864636 ATTTTTGTTTAGACCA
1 ATTTTTGTTAAGACCA
66864652 ATT
1 ATT
66864655 ACAAATAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.29, C:0.12, G:0.09, T:0.50
Consensus pattern (16 bp):
ATTTTTGTTAAGACCA
Found at i:66865206 original size:14 final size:14
Alignment explanation
Indices: 66865184--66865233 Score: 57
Period size: 15 Copynumber: 3.5 Consensus size: 14
66865174 TGAATGTTCC
66865184 TTTTTTTGG-TTTT
1 TTTTTTTGGATTTT
*
66865197 TTTTTGTTGGAATTT
1 TTTTT-TTGGATTTT
*
66865212 TTTTTCTGGAATTTT
1 TTTTTTTGG-ATTTT
66865227 TTTTTTT
1 TTTTTTT
66865234 TGCTCTTTTT
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
13 5 0.17
14 7 0.23
15 18 0.60
ACGTcount: A:0.08, C:0.02, G:0.14, T:0.76
Consensus pattern (14 bp):
TTTTTTTGGATTTT
Found at i:66865214 original size:15 final size:14
Alignment explanation
Indices: 66865194--66865230 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
66865184 TTTTTTTGGT
*
66865194 TTTTTTTTGTTGGAA
1 TTTTTTTT-CTGGAA
66865209 TTTTTTTTCTGGAA
1 TTTTTTTTCTGGAA
66865223 TTTTTTTT
1 TTTTTTTT
66865231 TTTTGCTCTT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
14 13 0.62
15 8 0.38
ACGTcount: A:0.11, C:0.03, G:0.14, T:0.73
Consensus pattern (14 bp):
TTTTTTTTCTGGAA
Found at i:66865531 original size:31 final size:30
Alignment explanation
Indices: 66865443--66865549 Score: 114
Period size: 31 Copynumber: 3.6 Consensus size: 30
66865433 TAAAACTTCT
*
66865443 GGGG-CTAAATGTAATTTTTAGAAAA-TTTA
1 GGGGTCTAAATGTAA-TTTAAGAAAAGTTTA
*
66865472 -GGGT-TAAAATGTAATTTAAGGAAAGTTTA
1 GGGGTCT-AAATGTAATTTAAGAAAAGTTTA
*
66865501 GGGGTCTAAATGAAATTTAAAGAAAAGTTTA
1 GGGGTCTAAATGTAATTT-AAGAAAAGTTTA
* *
66865532 GGGGTCAAAATGCAATTT
1 GGGGTCTAAATGTAATTT
66865550 TTTTATTTTT
Statistics
Matches: 66, Mismatches: 6, Indels: 10
0.80 0.07 0.12
Matches are distributed among these distances:
28 12 0.18
29 12 0.18
30 14 0.21
31 28 0.42
ACGTcount: A:0.40, C:0.04, G:0.23, T:0.33
Consensus pattern (30 bp):
GGGGTCTAAATGTAATTTAAGAAAAGTTTA
Found at i:66870937 original size:27 final size:27
Alignment explanation
Indices: 66870902--66871065 Score: 175
Period size: 27 Copynumber: 6.1 Consensus size: 27
66870892 TACTGAAATG
* * *
66870902 CCCTTGATTTGTAGAATTATCATTTTA
1 CCCTCGATTTATAGAATTACCATTTTA
* * *
66870929 CCATCGATTTATAGAATTACCGTTTCA
1 CCCTCGATTTATAGAATTACCATTTTA
* * *
66870956 CCCTCGATTTACAAAATTACCGTTTTA
1 CCCTCGATTTATAGAATTACCATTTTA
*
66870983 CCCTCGATTTATAAAATTACCATTTTA
1 CCCTCGATTTATAGAATTACCATTTTA
* *
66871010 CCCTCGATTTACAGAATTACTATTTTA
1 CCCTCGATTTATAGAATTACCATTTTA
* * * * *
66871037 CCCTTGATCTACAAAATTACCGTTTTA
1 CCCTCGATTTATAGAATTACCATTTTA
66871064 CC
1 CC
66871066 TTCAATTGTG
Statistics
Matches: 117, Mismatches: 20, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 117 1.00
ACGTcount: A:0.29, C:0.23, G:0.08, T:0.40
Consensus pattern (27 bp):
CCCTCGATTTATAGAATTACCATTTTA
Found at i:66871017 original size:81 final size:81
Alignment explanation
Indices: 66870902--66871065 Score: 229
Period size: 81 Copynumber: 2.0 Consensus size: 81
66870892 TACTGAAATG
* * * * * * *
66870902 CCCTTGATTTGTAGAATTATCATTTTACCATCGATTTATAGAATTACCGTTTCACCCTCGATTTA
1 CCCTCGATTTATAAAATTACCATTTTACCATCGATTTACAGAATTACCATTTCACCCTCGATCTA
66870967 CAAAATTACCGTTTTA
66 CAAAATTACCGTTTTA
* * * *
66870983 CCCTCGATTTATAAAATTACCATTTTACCCTCGATTTACAGAATTACTATTTTACCCTTGATCTA
1 CCCTCGATTTATAAAATTACCATTTTACCATCGATTTACAGAATTACCATTTCACCCTCGATCTA
66871048 CAAAATTACCGTTTTA
66 CAAAATTACCGTTTTA
66871064 CC
1 CC
66871066 TTCAATTGTG
Statistics
Matches: 72, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
81 72 1.00
ACGTcount: A:0.29, C:0.23, G:0.08, T:0.40
Consensus pattern (81 bp):
CCCTCGATTTATAAAATTACCATTTTACCATCGATTTACAGAATTACCATTTCACCCTCGATCTA
CAAAATTACCGTTTTA
Found at i:66871134 original size:27 final size:27
Alignment explanation
Indices: 66871104--66871229 Score: 146
Period size: 27 Copynumber: 4.7 Consensus size: 27
66871094 TGTAGGATAG
*
66871104 AATTACCACAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
* ** *
66871131 AATTACCAAAACACCTTTAGTTAGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
* * *
66871158 AATTACCAAAATACCACTGGTTTGTGA
1 AATTACCAAAATACCCCTAGTTTGTAA
* *
66871185 AATTACCGAAATA-CCCTCAATTTGTAA
1 AATTACCAAAATACCCCT-AGTTTGTAA
66871212 AATTACCAAAATACCCCT
1 AATTACCAAAATACCCCT
66871230 GATTTACAAA
Statistics
Matches: 80, Mismatches: 17, Indels: 3
0.80 0.17 0.03
Matches are distributed among these distances:
26 3 0.04
27 73 0.91
28 4 0.05
ACGTcount: A:0.40, C:0.23, G:0.08, T:0.29
Consensus pattern (27 bp):
AATTACCAAAATACCCCTAGTTTGTAA
Found at i:66871234 original size:27 final size:27
Alignment explanation
Indices: 66871104--66871281 Score: 139
Period size: 27 Copynumber: 6.6 Consensus size: 27
66871094 TGTAGGATAG
*
66871104 AATTACCACAATACCCCT-AGTTTGTAA
1 AATTACCAAAATACCCCTGA-TTTGTAA
* * * *
66871131 AATTACCAAAACA-CCTTTAGTTAGTAA
1 AATTACCAAAATACCCCTGA-TTTGTAA
* * *
66871158 AATTACCAAAATACCACTGGTTTGTGA
1 AATTACCAAAATACCCCTGATTTGTAA
* *
66871185 AATTACCGAAATA-CCCTCAATTTGTAA
1 AATTACCAAAATACCCCT-GATTTGTAA
**
66871212 AATTACCAAAATACCCCTGATTTACAA
1 AATTACCAAAATACCCCTGATTTGTAA
* * *
66871239 AATTA-TAGAAATACCCTTGATTTGTAG
1 AATTACCA-AAATACCCCTGATTTGTAA
* *
66871266 ATTTACCAAAACACCC
1 AATTACCAAAATACCC
66871282 TTGTAGGATG
Statistics
Matches: 117, Mismatches: 28, Indels: 12
0.75 0.18 0.08
Matches are distributed among these distances:
26 7 0.06
27 103 0.88
28 7 0.06
ACGTcount: A:0.40, C:0.22, G:0.08, T:0.29
Consensus pattern (27 bp):
AATTACCAAAATACCCCTGATTTGTAA
Found at i:66871242 original size:54 final size:54
Alignment explanation
Indices: 66871104--66871281 Score: 178
Period size: 54 Copynumber: 3.3 Consensus size: 54
66871094 TGTAGGATAG
* * * * * *
66871104 AATTACCACAATACCCCT-AGTTTGTAAAATTACCAAAACACCTTTAGTTAGTAA
1 AATTACCAAAATACCCCTGA-TTTGTAAAATTACCGAAATACCCTTAATTTGTAA
* * * *
66871158 AATTACCAAAATACCACTGGTTTGTGAAATTACCGAAATACCCTCAATTTGTAA
1 AATTACCAAAATACCCCTGATTTGTAAAATTACCGAAATACCCTTAATTTGTAA
** ** * *
66871212 AATTACCAAAATACCCCTGATTTACAAAATTATAGAAATACCCTTGATTTGTAG
1 AATTACCAAAATACCCCTGATTTGTAAAATTACCGAAATACCCTTAATTTGTAA
* *
66871266 ATTTACCAAAACACCC
1 AATTACCAAAATACCC
66871282 TTGTAGGATG
Statistics
Matches: 101, Mismatches: 22, Indels: 2
0.81 0.18 0.02
Matches are distributed among these distances:
54 101 1.00
ACGTcount: A:0.40, C:0.22, G:0.08, T:0.29
Consensus pattern (54 bp):
AATTACCAAAATACCCCTGATTTGTAAAATTACCGAAATACCCTTAATTTGTAA
Found at i:66872031 original size:25 final size:25
Alignment explanation
Indices: 66872003--66872050 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
66871993 TTATAGTATG
* * *
66872003 AAAATGACTATTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
66872028 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
66872051 GTTTAATTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.35, C:0.23, G:0.15, T:0.27
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:66872125 original size:20 final size:20
Alignment explanation
Indices: 66872102--66872152 Score: 75
Period size: 20 Copynumber: 2.5 Consensus size: 20
66872092 TTGATGTGAT
*
66872102 ATGCACATGGTATGTATAAA
1 ATGCACATGATATGTATAAA
*
66872122 ATGCACATGATATGTATGAA
1 ATGCACATGATATGTATAAA
*
66872142 ATGCATATGAT
1 ATGCACATGAT
66872153 GTATTCATAA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.39, C:0.10, G:0.20, T:0.31
Consensus pattern (20 bp):
ATGCACATGATATGTATAAA
Found at i:66872280 original size:52 final size:51
Alignment explanation
Indices: 66872202--66872337 Score: 215
Period size: 52 Copynumber: 2.7 Consensus size: 51
66872192 GAGGAAGTGT
**
66872202 AAAAGGGCTTATGCCCTTGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTT-TGCCCCAGTTTACCG
66872254 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTTGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTTGCCCCAGTTTACCG
66872305 AAAAGGGCTT-TGCCCCAG-TTATT-AAAAGAGGCT
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAG-GGCT
66872338 AGGCCTCCAG
Statistics
Matches: 81, Mismatches: 2, Indels: 5
0.92 0.02 0.06
Matches are distributed among these distances:
48 5 0.06
49 9 0.11
50 8 0.10
51 25 0.31
52 34 0.42
ACGTcount: A:0.27, C:0.21, G:0.24, T:0.28
Consensus pattern (51 bp):
AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTTGCCCCAGTTTACCG
Found at i:66872299 original size:25 final size:26
Alignment explanation
Indices: 66872202--66872337 Score: 181
Period size: 26 Copynumber: 5.3 Consensus size: 26
66872192 GAGGAAGTGT
**
66872202 AAAAGGGCTTATGCCCTTGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
**
66872228 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
66872254 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
**
66872280 AAAAGGGCTT-TGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
66872305 AAAAGGGCTT-TGCCCCAG-TTATT-
1 AAAAGGGCTTATGCCCCAGTTTATTG
66872328 AAAAGAGGCT
1 AAAAG-GGCT
66872338 AGGCCTCCAG
Statistics
Matches: 99, Mismatches: 10, Indels: 4
0.88 0.09 0.04
Matches are distributed among these distances:
23 5 0.05
24 7 0.07
25 31 0.31
26 56 0.57
ACGTcount: A:0.27, C:0.21, G:0.24, T:0.28
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATTG
Found at i:66872529 original size:42 final size:42
Alignment explanation
Indices: 66872470--66872558 Score: 124
Period size: 42 Copynumber: 2.1 Consensus size: 42
66872460 TAGTCTCCCC
* * ** *
66872470 AAATGGGCTTGCATACATTCATTGGTATTTCATATGATATTG
1 AAATGAGCTTGCATACATCCATTGACATTACATATGATATTG
*
66872512 AAATGAGCTTGCATACATCCATTGACATTACATGTGATATTG
1 AAATGAGCTTGCATACATCCATTGACATTACATATGATATTG
66872554 AAATG
1 AAATG
66872559 GGCCTATGGG
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
42 41 1.00
ACGTcount: A:0.33, C:0.13, G:0.18, T:0.36
Consensus pattern (42 bp):
AAATGAGCTTGCATACATCCATTGACATTACATATGATATTG
Found at i:66872620 original size:31 final size:31
Alignment explanation
Indices: 66872585--66872723 Score: 185
Period size: 31 Copynumber: 4.5 Consensus size: 31
66872575 CGTTTACAGT
66872585 AAAGGCTTCGGCCCAGTGAAATGATTTATGA
1 AAAGGCTTCGGCCCAGTGAAATGATTTATGA
* *
66872616 AAAGGCTTCAGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGAAATGATTTATGA
*
66872647 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGAAATGATTTATGA
* * * *
66872678 AAAGGCTTCGGCACAGT-AACTG-TTAAACG-
1 AAAGGCTTCGGCCCAGTGAAATGATT-TATGA
66872707 AAAGGCTTCGGCCCAGT
1 AAAGGCTTCGGCCCAGT
66872724 ATATGTCAAG
Statistics
Matches: 98, Mismatches: 9, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
29 18 0.18
30 5 0.05
31 75 0.77
ACGTcount: A:0.31, C:0.19, G:0.25, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGAAATGATTTATGA
Found at i:66875030 original size:54 final size:54
Alignment explanation
Indices: 66874968--66875134 Score: 255
Period size: 54 Copynumber: 3.1 Consensus size: 54
66874958 TACTGAAATG
* *
66874968 CCCTCGATTTGTAGAATTACCATTTCACCCTCGATTTACAAAATTACCGTTTTA
1 CCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAAAATTACCGTTTTA
* *
66875022 CCCTCGATTTATAGAATTACCATTTTACCTTCGATTTACAGAATTACCGTTTTA
1 CCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAAAATTACCGTTTTA
* * *
66875076 CCCTCGATTTACAAAATTACCATTTTACCCTC-AGTTTACAAAATTATCGTTTTA
1 CCCTCGATTTATAGAATTACCATTTTACCCTCGA-TTTACAAAATTACCGTTTTA
66875130 CCCTC
1 CCCTC
66875135 AATTGTTAAA
Statistics
Matches: 103, Mismatches: 9, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
53 1 0.01
54 102 0.99
ACGTcount: A:0.28, C:0.26, G:0.08, T:0.38
Consensus pattern (54 bp):
CCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAAAATTACCGTTTTA
Found at i:66875135 original size:27 final size:27
Alignment explanation
Indices: 66874968--66875134 Score: 210
Period size: 27 Copynumber: 6.2 Consensus size: 27
66874958 TACTGAAATG
** * * *
66874968 CCCTCGATTTGTAGAATTACCATTTCA
1 CCCTCGATTTACAAAATTACCGTTTTA
66874995 CCCTCGATTTACAAAATTACCGTTTTA
1 CCCTCGATTTACAAAATTACCGTTTTA
* * *
66875022 CCCTCGATTTATAGAATTACCATTTTA
1 CCCTCGATTTACAAAATTACCGTTTTA
* *
66875049 CCTTCGATTTACAGAATTACCGTTTTA
1 CCCTCGATTTACAAAATTACCGTTTTA
*
66875076 CCCTCGATTTACAAAATTACCATTTTA
1 CCCTCGATTTACAAAATTACCGTTTTA
*
66875103 CCCTC-AGTTTACAAAATTATCGTTTTA
1 CCCTCGA-TTTACAAAATTACCGTTTTA
66875130 CCCTC
1 CCCTC
66875135 AATTGTTAAA
Statistics
Matches: 123, Mismatches: 16, Indels: 2
0.87 0.11 0.01
Matches are distributed among these distances:
26 1 0.01
27 122 0.99
ACGTcount: A:0.28, C:0.26, G:0.08, T:0.38
Consensus pattern (27 bp):
CCCTCGATTTACAAAATTACCGTTTTA
Found at i:66875200 original size:27 final size:27
Alignment explanation
Indices: 66875170--66875347 Score: 139
Period size: 27 Copynumber: 6.6 Consensus size: 27
66875160 TGTAGGATAG
* * *
66875170 AATTACCACAGTACCCCTAGTTTGTCA
1 AATTACCAAAATACCCCTAGTTTGTAA
* *
66875197 AATTACCAAAACACCCCTAGTTAGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
* * *
66875224 AATTACCAAAATACCACTGGTTTGTGA
1 AATTACCAAAATACCCCTAGTTTGTAA
* * *
66875251 AATTATCGAAATA-CCCTCAATTTGTAA
1 AATTACCAAAATACCCCT-AGTTTGTAA
**
66875278 AATTACCAAAATACCCCT-GATTTACAA
1 AATTACCAAAATACCCCTAG-TTTGTAA
* *
66875305 AATTA-CAGAAATA-CCCTTGATTTGTAG
1 AATTACCA-AAATACCCCTAG-TTTGTAA
* *
66875332 ATTTACCAAAACACCC
1 AATTACCAAAATACCC
66875348 TTGTAGGATA
Statistics
Matches: 118, Mismatches: 26, Indels: 13
0.75 0.17 0.08
Matches are distributed among these distances:
26 9 0.08
27 101 0.86
28 8 0.07
ACGTcount: A:0.39, C:0.24, G:0.09, T:0.28
Consensus pattern (27 bp):
AATTACCAAAATACCCCTAGTTTGTAA
Found at i:66875348 original size:81 final size:81
Alignment explanation
Indices: 66875190--66875348 Score: 173
Period size: 81 Copynumber: 2.0 Consensus size: 81
66875180 GTACCCCTAG
* * *
66875190 TTTGTCAAATTACCAAAACACCCCTAGTTAGTAAAATTACCAAAATACCACTGGTTTGTGAAATT
1 TTTGTAAAATTACCAAAACACCCCTAGTTAGCAAAATTACCAAAATACCACTGATTTGTGAAATT
* * *
66875255 ATCGAAATACCCTCAA
66 ACCAAAACACCCTCAA
* *
66875271 TTTGTAAAATTACCAAAATACCCCTGATTTA-CAAAATTA-CAGAAATACC-CTTGATTTGT-AG
1 TTTGTAAAATTACCAAAACACCCCT-AGTTAGCAAAATTACCA-AAATACCAC-TGATTTGTGA-
*
66875332 ATTTACCAAAACACCCT
62 AATTACCAAAACACCCT
66875349 TGTAGGATAA
Statistics
Matches: 65, Mismatches: 9, Indels: 8
0.79 0.11 0.10
Matches are distributed among these distances:
80 4 0.06
81 57 0.88
82 4 0.06
ACGTcount: A:0.40, C:0.22, G:0.09, T:0.30
Consensus pattern (81 bp):
TTTGTAAAATTACCAAAACACCCCTAGTTAGCAAAATTACCAAAATACCACTGATTTGTGAAATT
ACCAAAACACCCTCAA
Found at i:66881553 original size:23 final size:23
Alignment explanation
Indices: 66881527--66881570 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 23
66881517 TGGGTATGTG
*
66881527 ATGACGTTATCTT-ATAAATATGC
1 ATGAAGTTATCTTGA-AAATATGC
*
66881550 ATGAATTTATCTTGAAAATAT
1 ATGAAGTTATCTTGAAAATAT
66881571 ATTGAATTGG
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
23 17 0.94
24 1 0.06
ACGTcount: A:0.39, C:0.09, G:0.11, T:0.41
Consensus pattern (23 bp):
ATGAAGTTATCTTGAAAATATGC
Found at i:66885937 original size:21 final size:21
Alignment explanation
Indices: 66885912--66885973 Score: 81
Period size: 21 Copynumber: 3.0 Consensus size: 21
66885902 AACACTGATA
*
66885912 CACATGATATGACGTGATATG
1 CACATGATATGACATGATATG
**
66885933 CACATGATATGTTATGATATG
1 CACATGATATGACATGATATG
66885954 CACATGATATG-CTATGATAT
1 CACATGATATGAC-ATGATAT
66885974 ATTCACTATA
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
21 36 1.00
ACGTcount: A:0.34, C:0.13, G:0.19, T:0.34
Consensus pattern (21 bp):
CACATGATATGACATGATATG
Found at i:66885942 original size:11 final size:11
Alignment explanation
Indices: 66885912--66885965 Score: 67
Period size: 11 Copynumber: 5.1 Consensus size: 11
66885902 AACACTGATA
66885912 CACATGATATG
1 CACATGATATG
*
66885923 -ACGTGATATG
1 CACATGATATG
66885933 CACATGATATG
1 CACATGATATG
**
66885944 -TTATGATATG
1 CACATGATATG
66885954 CACATGATATG
1 CACATGATATG
66885965 C
1 C
66885966 TATGATATAT
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
10 17 0.49
11 18 0.51
ACGTcount: A:0.33, C:0.15, G:0.20, T:0.31
Consensus pattern (11 bp):
CACATGATATG
Found at i:66893829 original size:21 final size:21
Alignment explanation
Indices: 66893804--66893865 Score: 81
Period size: 21 Copynumber: 3.0 Consensus size: 21
66893794 AACACTGATA
*
66893804 CACATGATATGACGTGATATG
1 CACATGATATGACATGATATG
**
66893825 CACATGATATGTTATGATATG
1 CACATGATATGACATGATATG
66893846 CACATGATATG-CTATGATAT
1 CACATGATATGAC-ATGATAT
66893866 ATTCACTATA
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
21 36 1.00
ACGTcount: A:0.34, C:0.13, G:0.19, T:0.34
Consensus pattern (21 bp):
CACATGATATGACATGATATG
Done.