Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100714657
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 3970000 characters in sequence are not A, C, G, or T
File 213 of 318
Found at i:67199677 original size:29 final size:30
Alignment explanation
Indices: 67199638--67199716 Score: 110
Period size: 29 Copynumber: 2.7 Consensus size: 30
67199628 CTTAATAATC
67199638 AACCACGCACACTTAGTGCCATGTAC-TTTA
1 AACC-CGCACACTTAGTGCCATGTACATTTA
*
67199668 AACTCGCACACTTAGTG-C-TGTACAATTTA
1 AACCCGCACACTTAGTGCCATGTAC-ATTTA
67199697 AACCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
67199717 ATCTCATGAC
Statistics
Matches: 43, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
27 5 0.12
28 1 0.02
29 33 0.77
30 4 0.09
ACGTcount: A:0.30, C:0.30, G:0.14, T:0.25
Consensus pattern (30 bp):
AACCCGCACACTTAGTGCCATGTACATTTA
Found at i:67204645 original size:33 final size:33
Alignment explanation
Indices: 67204603--67204668 Score: 132
Period size: 33 Copynumber: 2.0 Consensus size: 33
67204593 TGGAAACCAC
67204603 TTAAAAATGTAACCGAGATTAGAAGCTTTTTGG
1 TTAAAAATGTAACCGAGATTAGAAGCTTTTTGG
67204636 TTAAAAATGTAACCGAGATTAGAAGCTTTTTGG
1 TTAAAAATGTAACCGAGATTAGAAGCTTTTTGG
67204669 GCTTAGCCGG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.36, C:0.09, G:0.21, T:0.33
Consensus pattern (33 bp):
TTAAAAATGTAACCGAGATTAGAAGCTTTTTGG
Found at i:67206642 original size:46 final size:45
Alignment explanation
Indices: 67206592--67206767 Score: 203
Period size: 46 Copynumber: 3.8 Consensus size: 45
67206582 TGTTTGGGCA
67206592 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*** * *
67206638 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
* *
67206685 TCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *
67206731 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
67206768 GCGGATTACA
Statistics
Matches: 109, Mismatches: 14, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 68 0.62
47 31 0.28
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.29
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:67206747 original size:93 final size:93
Alignment explanation
Indices: 67206588--67206759 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
67206578 AGGATGTTTG
* *
67206588 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
67206653 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* * *
67206681 GGCATCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
67206746 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
67206760 ACTTATGGGC
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:67211183 original size:15 final size:15
Alignment explanation
Indices: 67211163--67211231 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
67211153 GTATCTTGGG
67211163 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
67211178 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
67211193 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
67211208 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
67211223 TTTCTTTAT
1 TTTCTTTAT
67211232 TCGGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:67211232 original size:30 final size:30
Alignment explanation
Indices: 67211154--67211241 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
67211144 CATAATATCG
* * * *
67211154 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
67211184 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
67211214 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
67211242 TATTATCTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 8 0.16
30 41 0.82
31 1 0.02
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:67213676 original size:46 final size:45
Alignment explanation
Indices: 67213626--67213801 Score: 203
Period size: 46 Copynumber: 3.8 Consensus size: 45
67213616 TGTTTGGGCA
67213626 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*** * *
67213672 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
* *
67213719 TCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *
67213765 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
67213802 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 14, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 68 0.62
47 31 0.28
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.29
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:67213781 original size:93 final size:93
Alignment explanation
Indices: 67213622--67213793 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
67213612 AGGATGTTTG
* *
67213622 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
67213687 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* * *
67213715 GGCATCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
67213780 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
67213794 ACTTATGGGC
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:67216568 original size:15 final size:15
Alignment explanation
Indices: 67216548--67216616 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
67216538 GTATCTTGGG
67216548 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
67216563 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
67216578 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
67216593 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
67216608 TTTCTTTAT
1 TTTCTTTAT
67216617 TCGGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:67216617 original size:30 final size:30
Alignment explanation
Indices: 67216539--67216626 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
67216529 CATAATGTCG
* * * *
67216539 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
67216569 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
67216599 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
67216627 TATTATCTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 8 0.16
30 41 0.82
31 1 0.02
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:67219053 original size:46 final size:45
Alignment explanation
Indices: 67219003--67219178 Score: 203
Period size: 46 Copynumber: 3.8 Consensus size: 45
67218993 TGTTTGGGCA
67219003 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*** * *
67219049 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
* *
67219096 TCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *
67219142 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
67219179 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 14, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 68 0.62
47 31 0.28
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.29
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:67219158 original size:93 final size:93
Alignment explanation
Indices: 67218999--67219170 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
67218989 AGGATGTTTG
* *
67218999 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
67219064 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* * *
67219092 GGCATCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
67219157 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
67219171 ACTTATGGGC
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:67221950 original size:15 final size:15
Alignment explanation
Indices: 67221930--67221998 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
67221920 GTATCTTGGG
67221930 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
67221945 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
67221960 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
67221975 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
67221990 TTTCTTTAT
1 TTTCTTTAT
67221999 TCGGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:67221999 original size:30 final size:30
Alignment explanation
Indices: 67221921--67222008 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
67221911 CATAATGTCG
* * * *
67221921 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
67221951 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
67221981 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
67222009 TATTATCTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 8 0.16
30 41 0.82
31 1 0.02
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:67224444 original size:46 final size:46
Alignment explanation
Indices: 67224394--67224568 Score: 189
Period size: 46 Copynumber: 3.8 Consensus size: 46
67224384 TGTTTGGGCA
*
67224394 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
* * * *
67224440 TCCGAACTCGTTGAGTTAAGTCCGAGTT---TGA-GAGATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATG-GATGCAA--ATG
* *
67224485 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
* *
67224533 CCCGAGCTCGTTGAGTT-AGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
67224569 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 11, Indels: 19
0.78 0.08 0.14
Matches are distributed among these distances:
42 1 0.01
43 7 0.06
45 21 0.19
46 43 0.39
47 26 0.24
48 2 0.02
50 8 0.07
51 1 0.01
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
Found at i:67224549 original size:93 final size:92
Alignment explanation
Indices: 67224390--67224559 Score: 286
Period size: 93 Copynumber: 1.8 Consensus size: 92
67224380 AGGATGTTTG
* * *
67224390 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAG
67224455 TTAAGTCCGAGTTTGAGAGATGTAACTA
66 TT-AGTCCGAGTTTGAGAGATGTAACTA
* *
67224483 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAG
67224548 TTAGTCCGAGTT
66 TTAGTCCGAGTT
67224560 CACTTATGGG
Statistics
Matches: 72, Mismatches: 5, Indels: 1
0.92 0.06 0.01
Matches are distributed among these distances:
92 10 0.14
93 62 0.86
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (92 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAG
TTAGTCCGAGTTTGAGAGATGTAACTA
Found at i:67242693 original size:5 final size:5
Alignment explanation
Indices: 67242683--67242708 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
67242673 CGAAATTAAT
67242683 AATAA AATAA AATAA AATAA AATAA A
1 AATAA AATAA AATAA AATAA AATAA A
67242709 CTTTCTAAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AATAA
Found at i:67247843 original size:5 final size:5
Alignment explanation
Indices: 67247833--67247862 Score: 60
Period size: 5 Copynumber: 6.0 Consensus size: 5
67247823 ATAAATAGTA
67247833 AAATT AAATT AAATT AAATT AAATT AAATT
1 AAATT AAATT AAATT AAATT AAATT AAATT
67247863 GTAAGAAAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 25 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (5 bp):
AAATT
Found at i:67257324 original size:27 final size:27
Alignment explanation
Indices: 67257293--67257470 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
67257283 TAAATTGTAC
67257293 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
67257320 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
67257346 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
67257374 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
67257402 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
67257429 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
67257456 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
67257471 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:67257407 original size:82 final size:81
Alignment explanation
Indices: 67257294--67257449 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
67257284 AAATTGTACA
* *
67257294 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
67257358 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
67257375 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
67257440 TGCGAGTTGA
65 TGCGAATTGA
67257450 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:67257461 original size:82 final size:81
Alignment explanation
Indices: 67257290--67257470 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
67257280 GATTAAATTG
* *
67257290 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
67257355 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
67257371 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
67257435 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
67257453 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
67257471 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:67261811 original size:55 final size:55
Alignment explanation
Indices: 67261728--67261838 Score: 125
Period size: 55 Copynumber: 2.0 Consensus size: 55
67261718 CGAGCTTGCC
* * * *
67261728 AAAACAACACGGGCATGTGACATGCCCGTGTGGAAG-AACCGTGGGCGAACCTGTT
1 AAAACAACACCGGCATGCGACACGCCCGTG-GCAAGCAACCGTGGGCGAACCTGTT
* * * * *
67261783 AAAACAGCACCGGCGTGCGACACGCCCGTGGCTAGCACCCGTGGTCGAACCTGTT
1 AAAACAACACCGGCATGCGACACGCCCGTGGCAAGCAACCGTGGGCGAACCTGTT
67261838 A
1 A
67261839 GATTGACACG
Statistics
Matches: 46, Mismatches: 9, Indels: 2
0.81 0.16 0.04
Matches are distributed among these distances:
54 3 0.07
55 43 0.93
ACGTcount: A:0.26, C:0.29, G:0.30, T:0.15
Consensus pattern (55 bp):
AAAACAACACCGGCATGCGACACGCCCGTGGCAAGCAACCGTGGGCGAACCTGTT
Found at i:67265445 original size:27 final size:26
Alignment explanation
Indices: 67265398--67265451 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 26
67265388 TCACACAAGT
67265398 TAGTCATTTACACACGAGGGGCAAAA
1 TAGTCATTTACACACGAGGGGCAAAA
* *
67265424 TAGTCATTTAACACCCTAGGGGCAAAA
1 TAGTCATTT-ACACACGAGGGGCAAAA
67265451 T
1 T
67265452 GGTAATTTTA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
26 9 0.36
27 16 0.64
ACGTcount: A:0.37, C:0.20, G:0.20, T:0.22
Consensus pattern (26 bp):
TAGTCATTTACACACGAGGGGCAAAA
Found at i:67265500 original size:27 final size:27
Alignment explanation
Indices: 67265452--67265543 Score: 121
Period size: 27 Copynumber: 3.4 Consensus size: 27
67265442 GGGGCAAAAT
* ** * *
67265452 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCTTACAGGGGTATTTC
*
67265479 GGTAATTCTACCTTACAGGGGTGTTTC
1 GGTAATTCTACCTTACAGGGGTATTTC
*
67265506 AGTAATTCTACCTTACAGGGGTATTTC
1 GGTAATTCTACCTTACAGGGGTATTTC
67265533 GGTAATTCTAC
1 GGTAATTCTAC
67265544 AACTTATCCA
Statistics
Matches: 56, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 56 1.00
ACGTcount: A:0.24, C:0.21, G:0.21, T:0.35
Consensus pattern (27 bp):
GGTAATTCTACCTTACAGGGGTATTTC
Found at i:67274606 original size:26 final size:26
Alignment explanation
Indices: 67274555--67274606 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
67274545 TACTATTTTT
* * *
67274555 CCCACTTTGGTCCTTAAAGTTTTTAG
1 CCCACTTTAGTCCCTAAAGTTGTTAG
*
67274581 CCCACTTTAGTCCCTAACGTTGTTAG
1 CCCACTTTAGTCCCTAAAGTTGTTAG
67274607 ACATTCCTAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.19, C:0.27, G:0.15, T:0.38
Consensus pattern (26 bp):
CCCACTTTAGTCCCTAAAGTTGTTAG
Found at i:67274757 original size:8 final size:8
Alignment explanation
Indices: 67274744--67274791 Score: 60
Period size: 8 Copynumber: 5.9 Consensus size: 8
67274734 ATCTCATCAT
67274744 TTAAAAAA
1 TTAAAAAA
*
67274752 TTAAAATA
1 TTAAAAAA
**
67274760 TTTTAAAA
1 TTAAAAAA
67274768 TTAAAAAAA
1 TT-AAAAAA
67274777 TTAAAAAA
1 TTAAAAAA
67274785 TTAAAAA
1 TTAAAAA
67274792 CAATGTATTT
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
8 27 0.82
9 6 0.18
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (8 bp):
TTAAAAAA
Found at i:67274767 original size:17 final size:17
Alignment explanation
Indices: 67274742--67274791 Score: 66
Period size: 17 Copynumber: 3.0 Consensus size: 17
67274732 TGATCTCATC
*
67274742 ATTTAAAAAATTAAAAT
1 ATTTAAAAAATTAAAAA
*
67274759 ATTT-TAAAATTAAAAA
1 ATTTAAAAAATTAAAAA
*
67274775 AATTAAAAAATTAAAAA
1 ATTTAAAAAATTAAAAA
67274792 CAATGTATTT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
16 13 0.46
17 15 0.54
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (17 bp):
ATTTAAAAAATTAAAAA
Found at i:67274872 original size:30 final size:27
Alignment explanation
Indices: 67274812--67274889 Score: 104
Period size: 26 Copynumber: 2.8 Consensus size: 27
67274802 TTTTTCTAAA
67274812 ATTTTTCATTATTTAAATAATAAATAT
1 ATTTTTCATTATTTAAATAATAAATAT
*
67274839 ATTTTT-ATAATTTAAATAATAAATAACATT
1 ATTTTTCATTATTTAAATAATAAAT---A-T
67274869 ATTTTTCATTATTTAAATAAT
1 ATTTTTCATTATTTAAATAAT
67274890 TAAAAAATTA
Statistics
Matches: 44, Mismatches: 2, Indels: 6
0.85 0.04 0.12
Matches are distributed among these distances:
26 17 0.39
27 6 0.14
29 1 0.02
30 7 0.16
31 13 0.30
ACGTcount: A:0.45, C:0.04, G:0.00, T:0.51
Consensus pattern (27 bp):
ATTTTTCATTATTTAAATAATAAATAT
Found at i:67274900 original size:30 final size:29
Alignment explanation
Indices: 67274812--67274900 Score: 112
Period size: 31 Copynumber: 3.1 Consensus size: 29
67274802 TTTTTCTAAA
*
67274812 ATTTTTCATTATTTAAATAAT-AAATA-T
1 ATTTTTCATTATTTAAATAATAAAAAATT
*
67274839 ATTTTT-ATAATTTAAATAATAAATAACATT
1 ATTTTTCATTATTTAAATAATAAA-AA-ATT
67274869 ATTTTTCATTATTTAAATAATTAAAAAATT
1 ATTTTTCATTATTTAAATAA-TAAAAAATT
67274899 AT
1 AT
67274901 CCAAATTTAT
Statistics
Matches: 53, Mismatches: 3, Indels: 9
0.82 0.05 0.14
Matches are distributed among these distances:
26 13 0.25
27 8 0.15
28 1 0.02
29 1 0.02
30 12 0.23
31 14 0.26
32 4 0.08
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.49
Consensus pattern (29 bp):
ATTTTTCATTATTTAAATAATAAAAAATT
Found at i:67277946 original size:21 final size:22
Alignment explanation
Indices: 67277921--67277969 Score: 59
Period size: 21 Copynumber: 2.3 Consensus size: 22
67277911 TGAAATAATT
67277921 TTTATAAT-TATTTTT-TATAAA
1 TTTATAATATATTTTTAT-TAAA
67277942 TTTAT-ATATATTTTTATTAAA
1 TTTATAATATATTTTTATTAAA
*
67277963 CTTATAA
1 TTTATAA
67277970 CATGCCATAT
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
20 2 0.08
21 20 0.83
22 2 0.08
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (22 bp):
TTTATAATATATTTTTATTAAA
Found at i:67283065 original size:19 final size:19
Alignment explanation
Indices: 67283037--67283079 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 19
67283027 GATGATATTT
67283037 TATA-ATTA-TTTAATTAG
1 TATATATTATTTTAATTAG
*
67283054 ATATATATTATTTTATTTAG
1 -TATATATTATTTTAATTAG
67283074 TATATA
1 TATATA
67283080 AGGAAAGAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
18 4 0.18
19 10 0.45
20 8 0.36
ACGTcount: A:0.40, C:0.00, G:0.05, T:0.56
Consensus pattern (19 bp):
TATATATTATTTTAATTAG
Found at i:67285132 original size:33 final size:32
Alignment explanation
Indices: 67285082--67285240 Score: 86
Period size: 33 Copynumber: 4.8 Consensus size: 32
67285072 ATGTTTTTAT
* *
67285082 GTAAGACCA-AAGTTGGGTTATGGCATTCTAAT
1 GTAAGACCATAA-CTGGGTTATGGCATTCTAAC
* * *
67285114 GATAAGACCATAACTGGGTTATGACACTATAAAC
1 G-TAAGACCATAACTGGGTTATGGCATTCT-AAC
*** *** * *
67285148 GTAAGACCATGGTTGGACCATGGCAGTGTTTATAT
1 GTAAGACCATAACTGGGTTATGGCA-T-TCTA-AC
* * * * *
67285183 GTAAGACCATAGCTAGGCTATGACATTCTGAC
1 GTAAGACCATAACTGGGTTATGGCATTCTAAC
67285215 GATAAGACCATAACTGGGTTATGGCA
1 G-TAAGACCATAACTGGGTTATGGCA
67285241 CTACGAATGT
Statistics
Matches: 92, Mismatches: 28, Indels: 13
0.69 0.21 0.10
Matches are distributed among these distances:
32 3 0.03
33 60 0.65
34 7 0.08
35 22 0.24
ACGTcount: A:0.33, C:0.16, G:0.24, T:0.27
Consensus pattern (32 bp):
GTAAGACCATAACTGGGTTATGGCATTCTAAC
Found at i:67285188 original size:101 final size:101
Alignment explanation
Indices: 67285013--67285243 Score: 354
Period size: 101 Copynumber: 2.3 Consensus size: 101
67285003 TGAATTGACG
*
67285013 GATAAGACCATAACTGGGTTATGACACTATGAACGTAAGACCATGGTTAGACCATGGCAATGTTT
1 GATAAGACCATAACTGGGTTATGACACTATAAACGTAAGACCATGGTTAGACCATGGCAATGTTT
* * * * * *
67285078 TTATGTAAGACCAAAGTTGGGTTATGGCATTCTAAT
66 ATATGTAAGACCAAAGCTAGGCTATGACATTCTAAC
* *
67285114 GATAAGACCATAACTGGGTTATGACACTATAAACGTAAGACCATGGTTGGACCATGGCAGTGTTT
1 GATAAGACCATAACTGGGTTATGACACTATAAACGTAAGACCATGGTTAGACCATGGCAATGTTT
* *
67285179 ATATGTAAGACCATAGCTAGGCTATGACATTCTGAC
66 ATATGTAAGACCAAAGCTAGGCTATGACATTCTAAC
*
67285215 GATAAGACCATAACTGGGTTATGGCACTA
1 GATAAGACCATAACTGGGTTATGACACTA
67285244 CGAATGTAAA
Statistics
Matches: 118, Mismatches: 12, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
101 118 1.00
ACGTcount: A:0.33, C:0.16, G:0.23, T:0.28
Consensus pattern (101 bp):
GATAAGACCATAACTGGGTTATGACACTATAAACGTAAGACCATGGTTAGACCATGGCAATGTTT
ATATGTAAGACCAAAGCTAGGCTATGACATTCTAAC
Found at i:67285616 original size:10 final size:10
Alignment explanation
Indices: 67285596--67285654 Score: 75
Period size: 10 Copynumber: 5.9 Consensus size: 10
67285586 AATTTTAGCT
*
67285596 TTTATTTTTA
1 TTTATCTTTA
*
67285606 TTTATCCTTA
1 TTTATCTTTA
67285616 TTTATCTTTA
1 TTTATCTTTA
*
67285626 ATTATCTTTA
1 TTTATCTTTA
67285636 TTTAT-TTGTA
1 TTTATCTT-TA
67285646 TTTATCTTT
1 TTTATCTTT
67285655 TAGAATTTAA
Statistics
Matches: 42, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
9 2 0.05
10 38 0.90
11 2 0.05
ACGTcount: A:0.20, C:0.08, G:0.02, T:0.69
Consensus pattern (10 bp):
TTTATCTTTA
Found at i:67300736 original size:140 final size:140
Alignment explanation
Indices: 67300479--67300740 Score: 316
Period size: 140 Copynumber: 1.9 Consensus size: 140
67300469 CACTTGTGTG
* * *
67300479 AGCTAGTGTAAGACATGTGTGGGACATGAATTGGCCACATTATGAGAGCCAGTGTAAGATCATGT
1 AGCTAGTGTAAGACATGTGTGGGACATGAATCGGCCACATAATGAGAGCCAGTGTAAGACCATGT
** * *
67300544 CTGGAACATGGCATCGGCATTGAGACGAGGGCTAGTGTAAGACATGCTTGGGACATGCATCGGCC
66 CTGGAACATGGCATCAACATTGAGACGAGAGCCAGTGTAAGACATGCTTGGGACATGCATCGGCC
67300609 TCGAGGCGTA
131 TCGAGGCGTA
* * * * * *
67300619 AGCTAGTGTAAGACATGTTTGGGACATGCATCGGCTATGA-AATGATAGTCAGTGTAAGACCATG
1 AGCTAGTGTAAGACATGTGTGGGACATGAATCGGCCA-CATAATGAGAGCCAGTGTAAGACCATG
* * *
67300683 TCTGGGACATGGCATCAAC-TTTAGA-TATGAGCCAGTGTAAGACCATG-TCTGGGACATG
65 TCTGGAACATGGCATCAACATTGAGACGA-GAGCCAGTGTAAGA-CATGCT-TGGGACATG
67300741 ACATTGGCAC
Statistics
Matches: 102, Mismatches: 16, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
138 1 0.01
139 18 0.18
140 82 0.80
141 1 0.01
ACGTcount: A:0.28, C:0.17, G:0.30, T:0.24
Consensus pattern (140 bp):
AGCTAGTGTAAGACATGTGTGGGACATGAATCGGCCACATAATGAGAGCCAGTGTAAGACCATGT
CTGGAACATGGCATCAACATTGAGACGAGAGCCAGTGTAAGACATGCTTGGGACATGCATCGGCC
TCGAGGCGTA
Found at i:67307015 original size:35 final size:35
Alignment explanation
Indices: 67306975--67307044 Score: 113
Period size: 35 Copynumber: 2.0 Consensus size: 35
67306965 ACTCAGCCCT
67306975 TGCAATAGGTAGTCAGTGGCGCAACTCGCAAGCAG
1 TGCAATAGGTAGTCAGTGGCGCAACTCGCAAGCAG
* * *
67307010 TGCAATCGGTAGTCAGTTGCGCAGCTCGCAAGCAG
1 TGCAATAGGTAGTCAGTGGCGCAACTCGCAAGCAG
67307045 CAAGCTCGTC
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
35 32 1.00
ACGTcount: A:0.26, C:0.24, G:0.31, T:0.19
Consensus pattern (35 bp):
TGCAATAGGTAGTCAGTGGCGCAACTCGCAAGCAG
Found at i:67307610 original size:18 final size:18
Alignment explanation
Indices: 67307587--67307622 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
67307577 AACTGCTGAA
67307587 AGCGATTCATGAATCTGT
1 AGCGATTCATGAATCTGT
67307605 AGCGATTCATGAATCTGT
1 AGCGATTCATGAATCTGT
67307623 TTTACAATGC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.28, C:0.17, G:0.22, T:0.33
Consensus pattern (18 bp):
AGCGATTCATGAATCTGT
Found at i:67310771 original size:41 final size:42
Alignment explanation
Indices: 67310721--67310815 Score: 122
Period size: 42 Copynumber: 2.3 Consensus size: 42
67310711 TGAGGAAGGC
* *
67310721 GTCGTTAAAGGTTTAATTTTATA-AAG-GTTTTTAAAAAAAGT
1 GTCGCTAAAGGTTT-ATTTTATAGAAGCGTTTGTAAAAAAAGT
* **
67310762 GTCGCTAAAGGTTTATTTTATAGAGGCGTTTGTGGAAAAAGT
1 GTCGCTAAAGGTTTATTTTATAGAAGCGTTTGTAAAAAAAGT
67310804 GTCGCTAAAGGT
1 GTCGCTAAAGGT
67310816 CGTACTCTAT
Statistics
Matches: 47, Mismatches: 5, Indels: 3
0.85 0.09 0.05
Matches are distributed among these distances:
40 8 0.17
41 15 0.32
42 24 0.51
ACGTcount: A:0.33, C:0.06, G:0.24, T:0.37
Consensus pattern (42 bp):
GTCGCTAAAGGTTTATTTTATAGAAGCGTTTGTAAAAAAAGT
Found at i:67310906 original size:43 final size:43
Alignment explanation
Indices: 67310849--67311038 Score: 159
Period size: 43 Copynumber: 4.4 Consensus size: 43
67310839 GGAGAGCACA
* * * * **
67310849 CTAAAGGTCATGTTCTATAACGGTGTTTGTGAGAAAAGTGTTG
1 CTAAAGGTCTTGTTCTATAACAGCGTTTGTGAGAAAAGCGCCG
* * *
67310892 CTAAATGTCTTGTTCTATAGCAGCGTTTGTGGGAAAAGCGCCG
1 CTAAAGGTCTTGTTCTATAACAGCGTTTGTGAGAAAAGCGCCG
* **
67310935 CTAAAGGTCTTGTTCTATAGA-AGCATTTGTG-GAAAAATGCCG
1 CTAAAGGTCTTGTTCTATA-ACAGCGTTTGTGAGAAAAGCGCCG
* * * * * * * *
67310977 TTAAAGGTCATGTTTTGTAGCAGTGTTAGTGAGAAAAACGCCG
1 CTAAAGGTCTTGTTCTATAACAGCGTTTGTGAGAAAAGCGCCG
* *
67311020 CTAAAAGTCATGTTCTATA
1 CTAAAGGTCTTGTTCTATA
67311039 GTGGTATTTA
Statistics
Matches: 117, Mismatches: 27, Indels: 6
0.78 0.18 0.04
Matches are distributed among these distances:
42 31 0.26
43 86 0.74
ACGTcount: A:0.29, C:0.14, G:0.25, T:0.32
Consensus pattern (43 bp):
CTAAAGGTCTTGTTCTATAACAGCGTTTGTGAGAAAAGCGCCG
Found at i:67310982 original size:42 final size:43
Alignment explanation
Indices: 67310891--67311082 Score: 161
Period size: 43 Copynumber: 4.5 Consensus size: 43
67310881 GAAAAGTGTT
* * * *
67310891 GCTAAATGTCTTGTTCTATAGCAGCGTTTGTGGGAAAAGCGCC
1 GCTAAAGGTCTTGTTCTATAGAAGCATTTGTGGGAAAAACGCC
*
67310934 GCTAAAGGTCTTGTTCTATAGAAGCATTTGT-GGAAAAATGCC
1 GCTAAAGGTCTTGTTCTATAGAAGCATTTGTGGGAAAAACGCC
* * * * * ** * *
67310976 GTTAAAGGTCATGTTTTGTAGCAGTGTTAGTGAGAAAAACGCC
1 GCTAAAGGTCTTGTTCTATAGAAGCATTTGTGGGAAAAACGCC
* * ** * * * * *
67311019 GCTAAAAGTCATGTTCTATAGTGGTATTTATAGTAAAAACACC
1 GCTAAAGGTCTTGTTCTATAGAAGCATTTGTGGGAAAAACGCC
*
67311062 GCTAAAGGTCATGTTCTATAG
1 GCTAAAGGTCTTGTTCTATAG
67311083 CAACGTTTTT
Statistics
Matches: 119, Mismatches: 29, Indels: 2
0.79 0.19 0.01
Matches are distributed among these distances:
42 32 0.27
43 87 0.73
ACGTcount: A:0.30, C:0.15, G:0.24, T:0.31
Consensus pattern (43 bp):
GCTAAAGGTCTTGTTCTATAGAAGCATTTGTGGGAAAAACGCC
Found at i:67313072 original size:29 final size:28
Alignment explanation
Indices: 67313036--67313113 Score: 104
Period size: 29 Copynumber: 2.7 Consensus size: 28
67313026 TCATGAGATT
67313036 GGCACTAAGTGTGCGGGTTTAAATTGTACA
1 GGCACTAAGTGTGCGGGTTTAAA--GTACA
*
67313066 -GCACTAAGTGTGCGAGTTTAAAGTACA
1 GGCACTAAGTGTGCGGGTTTAAAGTACA
67313093 TGGCACTAAGTGTGCGTGGTT
1 -GGCACTAAGTGTGCG-GGTT
67313114 GATTATTAAG
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
27 5 0.12
29 35 0.81
30 3 0.07
ACGTcount: A:0.26, C:0.14, G:0.31, T:0.29
Consensus pattern (28 bp):
GGCACTAAGTGTGCGGGTTTAAAGTACA
Found at i:67313331 original size:174 final size:174
Alignment explanation
Indices: 67313066--67313393 Score: 586
Period size: 174 Copynumber: 1.9 Consensus size: 174
67313056 AAATTGTACA
*
67313066 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGTGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
* *
67313131 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACACT-AAGGGTGCGACCTTACCGAGTCG
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACA-TGAAGGGTACGACCTTACCGAGTCA
67313195 ATTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
130 ATTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
* *
67313240 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
*
67313305 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTACGACTTTACCGAGTCAA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTACGACCTTACCGAGTCAA
67313370 TTTTGGACAGCGGAAAAGGTAAGT
131 TTTTGGACAGCGGAAAAGGTAAGT
67313394 ACCTTGAGTT
Statistics
Matches: 147, Mismatches: 6, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
173 1 0.01
174 146 0.99
ACGTcount: A:0.30, C:0.15, G:0.24, T:0.30
Consensus pattern (174 bp):
GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTACGACCTTACCGAGTCAA
TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
Found at i:67321224 original size:29 final size:28
Alignment explanation
Indices: 67321188--67321265 Score: 104
Period size: 29 Copynumber: 2.7 Consensus size: 28
67321178 TCATGAGATT
67321188 GGCACTAAGTGTGCGGGTTTAAATTGTACA
1 GGCACTAAGTGTGCGGGTTTAAA--GTACA
*
67321218 -GCACTAAGTGTGCGAGTTTAAAGTACA
1 GGCACTAAGTGTGCGGGTTTAAAGTACA
67321245 TGGCACTAAGTGTGCGTGGTT
1 -GGCACTAAGTGTGCG-GGTT
67321266 GATTATTAAG
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
27 5 0.12
29 35 0.81
30 3 0.07
ACGTcount: A:0.26, C:0.14, G:0.31, T:0.29
Consensus pattern (28 bp):
GGCACTAAGTGTGCGGGTTTAAAGTACA
Found at i:67321483 original size:174 final size:174
Alignment explanation
Indices: 67321218--67321545 Score: 575
Period size: 174 Copynumber: 1.9 Consensus size: 174
67321208 AAATTGTACA
*
67321218 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGTGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
* * *
67321283 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACCTTACTGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACCTTACCGAGTCAA
*
67321348 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAACGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
* * *
67321392 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGCGGTTGATTATTAAGCGCTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
*
67321457 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACCTTACCGAGTCAA
67321522 TTTTGGACAACGGAAAAGGTAAGT
131 TTTTGGACAACGGAAAAGGTAAGT
67321546 ACCTTGAGTT
Statistics
Matches: 145, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
174 145 1.00
ACGTcount: A:0.30, C:0.14, G:0.25, T:0.31
Consensus pattern (174 bp):
GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACCTTACCGAGTCAA
TTTTGGACAACGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
Found at i:67323603 original size:23 final size:23
Alignment explanation
Indices: 67323575--67323668 Score: 134
Period size: 23 Copynumber: 4.1 Consensus size: 23
67323565 ATGTGTGTAT
* *
67323575 CTTTTCATATTCAAGCCTCTTAA
1 CTTTTCATATTCAAGTCTCTTCA
*
67323598 CTTTTCATCTTCAAGTCTCTTCA
1 CTTTTCATATTCAAGTCTCTTCA
* * *
67323621 CTATTCATATTCAAGTTTTTTCA
1 CTTTTCATATTCAAGTCTCTTCA
67323644 CTTTTCATATTCAAGTCTCTTCA
1 CTTTTCATATTCAAGTCTCTTCA
67323667 CT
1 CT
67323669 CTTCTAACTT
Statistics
Matches: 61, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 61 1.00
ACGTcount: A:0.22, C:0.26, G:0.04, T:0.48
Consensus pattern (23 bp):
CTTTTCATATTCAAGTCTCTTCA
Found at i:67328110 original size:23 final size:23
Alignment explanation
Indices: 67328082--67328175 Score: 125
Period size: 23 Copynumber: 4.1 Consensus size: 23
67328072 ATGTGTGTAT
* *
67328082 CTTTTCATATTCAAGCCTTTTAA
1 CTTTTCATATTCAAGTCTTTTCA
* *
67328105 CTTTTCATCTTCAAGTCTCTTCA
1 CTTTTCATATTCAAGTCTTTTCA
* *
67328128 CTATTCATATTCAAGTTTTTTCA
1 CTTTTCATATTCAAGTCTTTTCA
*
67328151 CTTTTCATATTCAAGTCTCTTCA
1 CTTTTCATATTCAAGTCTTTTCA
67328174 CT
1 CT
67328176 CTTCTAACTT
Statistics
Matches: 60, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
23 60 1.00
ACGTcount: A:0.22, C:0.24, G:0.04, T:0.49
Consensus pattern (23 bp):
CTTTTCATATTCAAGTCTTTTCA
Found at i:67328138 original size:46 final size:46
Alignment explanation
Indices: 67328085--67328175 Score: 146
Period size: 46 Copynumber: 2.0 Consensus size: 46
67328075 TGTGTATCTT
*
67328085 TTCATATTCAAGCCTTTTAACTTTTCATCTTCAAGTCTCTTCACTA
1 TTCATATTCAAGCCTTTTAACTTTTCATATTCAAGTCTCTTCACTA
** *
67328131 TTCATATTCAAGTTTTTTCACTTTTCATATTCAAGTCTCTTCACT
1 TTCATATTCAAGCCTTTTAACTTTTCATATTCAAGTCTCTTCACT
67328176 CTTCTAACTT
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
46 41 1.00
ACGTcount: A:0.23, C:0.24, G:0.04, T:0.48
Consensus pattern (46 bp):
TTCATATTCAAGCCTTTTAACTTTTCATATTCAAGTCTCTTCACTA
Found at i:67329407 original size:19 final size:19
Alignment explanation
Indices: 67329378--67329429 Score: 88
Period size: 19 Copynumber: 2.7 Consensus size: 19
67329368 AATAAATTAC
67329378 TCATCTTAGTTAATTGAGT
1 TCATCTTAGTTAATTGAGT
67329397 TCAT-TTCAGTTAATTGAGT
1 TCATCTT-AGTTAATTGAGT
67329416 TCATCTTAGTTAAT
1 TCATCTTAGTTAAT
67329430 AACTCATCTT
Statistics
Matches: 31, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
18 2 0.06
19 27 0.87
20 2 0.06
ACGTcount: A:0.27, C:0.12, G:0.13, T:0.48
Consensus pattern (19 bp):
TCATCTTAGTTAATTGAGT
Found at i:67329438 original size:17 final size:18
Alignment explanation
Indices: 67329416--67329449 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
67329406 TTAATTGAGT
67329416 TCATCTTAG-TTAATAAC
1 TCATCTTAGATTAATAAC
67329433 TCATCTTAGATTAATAA
1 TCATCTTAGATTAATAA
67329450 ATGAGTTGCT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.38, C:0.15, G:0.06, T:0.41
Consensus pattern (18 bp):
TCATCTTAGATTAATAAC
Found at i:67336744 original size:83 final size:81
Alignment explanation
Indices: 67336552--67336767 Score: 285
Period size: 83 Copynumber: 2.7 Consensus size: 81
67336542 AAGTATCTTT
* * * * *
67336552 GGGATTTAG-CCGGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGCCC-GGATACAGTCAC
1 GGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGGATACACTCAC
* **
67336615 TGGCATGAATGCCTTC
66 TCGCACAAATGCCTTC
*
67336631 GGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGGTATAGCAACT
1 GGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGG-ATA-C-ACT
*
67336696 -ACTCGCACAAATTCCTTC
63 CACTCGCACAAATGCCTTC
*
67336714 GGGACTTAGCCCGGATATAGTAACTTGCACAAATGCCTTCGGGACTTAGCCCGG
1 GGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGG
67336768 ATATCATCCG
Statistics
Matches: 120, Mismatches: 12, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
79 8 0.07
80 38 0.32
81 2 0.02
82 3 0.03
83 67 0.56
84 2 0.02
ACGTcount: A:0.25, C:0.27, G:0.25, T:0.23
Consensus pattern (81 bp):
GGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGGATACACTCAC
TCGCACAAATGCCTTC
Found at i:67336771 original size:40 final size:40
Alignment explanation
Indices: 67336552--67336771 Score: 280
Period size: 40 Copynumber: 5.5 Consensus size: 40
67336542 AAGTATCTTT
* * *
67336552 GGGATTTAG-CCGGATATAGCAACTCGCACAAATGCCTTC
1 GGGACTTAGCCCGGATATAGTAACTTGCACAAATGCCTTC
* * * * **
67336591 GGGTCTTAGCCCGGATACAGTCACTGGCATGAATGCCTTC
1 GGGACTTAGCCCGGATATAGTAACTTGCACAAATGCCTTC
* *
67336631 GGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTC
1 GGGACTTAGCCCGGATATAGTAACTTGCACAAATGCCTTC
* * *
67336671 GGGACTTAGCCCGGGTATAGCAACTACTCGCACAAATTCCTTC
1 GGGACTTAGCCCGGATATAGTAACT--T-GCACAAATGCCTTC
67336714 GGGACTTAGCCCGGATATAGTAACTTGCACAAATGCCTTC
1 GGGACTTAGCCCGGATATAGTAACTTGCACAAATGCCTTC
67336754 GGGACTTAGCCCGGATAT
1 GGGACTTAGCCCGGATAT
67336772 CATCCGAATA
Statistics
Matches: 156, Mismatches: 21, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
39 7 0.04
40 112 0.72
41 1 0.01
43 36 0.23
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.24
Consensus pattern (40 bp):
GGGACTTAGCCCGGATATAGTAACTTGCACAAATGCCTTC
Found at i:67341538 original size:20 final size:20
Alignment explanation
Indices: 67341495--67341539 Score: 58
Period size: 20 Copynumber: 2.3 Consensus size: 20
67341485 ACTGTTTTGT
67341495 TATGGGCCAACTGTATTGAA
1 TATGGGCCAACTGTATTGAA
*
67341515 -ATGGGCCCAACTGTGTT-AA
1 TATGGG-CCAACTGTATTGAA
67341534 TATGGG
1 TATGGG
67341540 TAAGCCAACA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
19 7 0.32
20 15 0.68
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.29
Consensus pattern (20 bp):
TATGGGCCAACTGTATTGAA
Found at i:67345907 original size:47 final size:47
Alignment explanation
Indices: 67345822--67346183 Score: 523
Period size: 47 Copynumber: 7.6 Consensus size: 47
67345812 GTATATTTGA
* *
67345822 ATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTG
1 ATGAATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTG
* * *
67345871 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAG-CGATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTG
* *
67345917 ATGAATGTGAAAGTTTATATATGTGATAAGGCCGAATGACCAATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTG
67345964 ATGAATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTG
1 ATGAATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTG
* *
67346013 ATGAATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTG
1 ATGAATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTG
* *
67346060 ATGAATGTGAACA-TGCATATATGAGATAAGGCCGAATGGCCAATGTG
1 ATGAATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTG
67346107 ATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTG
* * *
67346154 ATGGATGTGGAAGTGTATAAATGTGATAAG
1 ATGAATGTGAAAGTGTATATATGTGATAAG
67346184 TCCCGAAGGG
Statistics
Matches: 289, Mismatches: 19, Indels: 12
0.90 0.06 0.04
Matches are distributed among these distances:
46 43 0.15
47 186 0.64
49 59 0.20
50 1 0.00
ACGTcount: A:0.34, C:0.08, G:0.29, T:0.28
Consensus pattern (47 bp):
ATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTG
Found at i:67350810 original size:42 final size:40
Alignment explanation
Indices: 67350648--67350810 Score: 139
Period size: 42 Copynumber: 3.9 Consensus size: 40
67350638 TATGAGTTTA
* * * * *
67350648 CGTGTAAGACCATATCTGGGATATGACCTCGTTATGATATTT
1 CGTGTAAGACCATATCTGGGATATGGCATTGATATGAGA--T
* * *
67350690 TGTGTAAGACCATGTCTGGGACATGGCATTGATATGAGAAT
1 CGTGTAAGACCATATCTGGGATATGGCATTGATATGAG-AT
** *
67350731 CGTGTAAGACCATAGGTGGGTTATTGGCATCT-ATATGAGAT
1 CGTGTAAGACCATATCTGGGATA-TGGCAT-TGATATGAGAT
* *
67350772 CCCATGTAAGACCATATCTGGGATATGGCATTGGTATGA
1 --CGTGTAAGACCATATCTGGGATATGGCATTGATATGA
67350811 TTCCATATGT
Statistics
Matches: 96, Mismatches: 19, Indels: 12
0.76 0.15 0.09
Matches are distributed among these distances:
41 21 0.22
42 54 0.56
43 21 0.22
ACGTcount: A:0.28, C:0.15, G:0.26, T:0.31
Consensus pattern (40 bp):
CGTGTAAGACCATATCTGGGATATGGCATTGATATGAGAT
Found at i:67352999 original size:8 final size:8
Alignment explanation
Indices: 67352981--67353010 Score: 51
Period size: 8 Copynumber: 3.6 Consensus size: 8
67352971 AAGCAAATTA
67352981 TGTGTATTT
1 TGTG-ATTT
67352990 TGTGATTT
1 TGTGATTT
67352998 TGTGATTT
1 TGTGATTT
67353006 TGTGA
1 TGTGA
67353011 ATGAGAGACT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
8 17 0.81
9 4 0.19
ACGTcount: A:0.13, C:0.00, G:0.27, T:0.60
Consensus pattern (8 bp):
TGTGATTT
Found at i:67353469 original size:44 final size:45
Alignment explanation
Indices: 67353405--67353496 Score: 150
Period size: 44 Copynumber: 2.1 Consensus size: 45
67353395 TAGGATCCGA
*
67353405 TATGTGTTTCCGTGTAAGACCACATCTGGGACGTTGGCATCGATT
1 TATGTGTTTACGTGTAAGACCACATCTGGGACGTTGGCATCGATT
**
67353450 TATGT-TTTACGTGTAAGACCATGTCTGGGACGTTGGCATCGATT
1 TATGTGTTTACGTGTAAGACCACATCTGGGACGTTGGCATCGATT
67353494 TAT
1 TAT
67353497 CTAATTTTGT
Statistics
Matches: 44, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
44 39 0.89
45 5 0.11
ACGTcount: A:0.21, C:0.17, G:0.26, T:0.36
Consensus pattern (45 bp):
TATGTGTTTACGTGTAAGACCACATCTGGGACGTTGGCATCGATT
Found at i:67353524 original size:45 final size:44
Alignment explanation
Indices: 67353415--67353537 Score: 144
Period size: 44 Copynumber: 2.8 Consensus size: 44
67353405 TATGTGTTTC
* *
67353415 CGTGTAAGACCAC-ATCTGGGACGTTGGCATCGATTTATGTTTTA
1 CGTGTAAGACC-CTGTCTGGGACGTTGGCATCGATTTATCTTTTA
*
67353459 CGTGTAAGACCATGTCTGGGACGTTGGCATCGATTTATCTAATTT-
1 CGTGTAAGACCCTGTCTGGGACGTTGGCATCGATTTATCT--TTTA
* *
67353504 TGTGTAAGACCCTGTCTGGGATAG-TGGCATCGAT
1 CGTGTAAGACCCTGTCTGGGA-CGTTGGCATCGAT
67353538 GTTTGCTTAC
Statistics
Matches: 69, Mismatches: 6, Indels: 7
0.84 0.07 0.09
Matches are distributed among these distances:
44 36 0.52
45 29 0.42
46 4 0.06
ACGTcount: A:0.22, C:0.18, G:0.27, T:0.33
Consensus pattern (44 bp):
CGTGTAAGACCCTGTCTGGGACGTTGGCATCGATTTATCTTTTA
Found at i:67358281 original size:27 final size:26
Alignment explanation
Indices: 67358233--67358292 Score: 66
Period size: 27 Copynumber: 2.3 Consensus size: 26
67358223 GCGAGGCTGC
* *
67358233 CAGATATTGTGACGAAGTCACCAGATT
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
67358260 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
67358286 CAGATAT
1 CAGATAT
67358293 ATATATGTGG
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 7 0.25
27 21 0.75
ACGTcount: A:0.33, C:0.20, G:0.23, T:0.23
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:67368895 original size:56 final size:56
Alignment explanation
Indices: 67368835--67369008 Score: 267
Period size: 56 Copynumber: 3.1 Consensus size: 56
67368825 CCAGACAGGT
** * *
67368835 TCTTACTCGCACACATATATCAGAGCCATATATCCATGCCAACGTATTAAACGTGG
1 TCTTACTCGCACACATATATCAGAATCACATATCGATGCCAACGTATTAAACGTGG
* *
67368891 TCTTACTCGCACACATATATCAGAATCACATATCGATGCCAATGTATTAAATGTGG
1 TCTTACTCGCACACATATATCAGAATCACATATCGATGCCAACGTATTAAACGTGG
* * *
67368947 TCTTACTCACACATATATATCAGAATAACATATCGATGCCAACGTATTAAACGTGG
1 TCTTACTCGCACACATATATCAGAATCACATATCGATGCCAACGTATTAAACGTGG
67369003 TCTTAC
1 TCTTAC
67369009 ACATAATCAC
Statistics
Matches: 107, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
56 107 1.00
ACGTcount: A:0.34, C:0.24, G:0.13, T:0.29
Consensus pattern (56 bp):
TCTTACTCGCACACATATATCAGAATCACATATCGATGCCAACGTATTAAACGTGG
Found at i:67372178 original size:30 final size:29
Alignment explanation
Indices: 67372142--67372211 Score: 95
Period size: 30 Copynumber: 2.3 Consensus size: 29
67372132 CATTTACAGT
*
67372142 AAAGGCTTCGCCCAGTGATATGAATAATGA
1 AAAGGCTTCGCCCAATGAT-TGAATAATGA
* *
67372172 AAAGGCTTTGGCCCAATGATTGAATTATGA
1 AAAGGC-TTCGCCCAATGATTGAATAATGA
67372202 AAAGGCTTCG
1 AAAGGCTTCG
67372212 AGCCAATAGT
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
29 3 0.09
30 21 0.60
31 11 0.31
ACGTcount: A:0.34, C:0.16, G:0.24, T:0.26
Consensus pattern (29 bp):
AAAGGCTTCGCCCAATGATTGAATAATGA
Found at i:67376065 original size:68 final size:68
Alignment explanation
Indices: 67375956--67376092 Score: 274
Period size: 68 Copynumber: 2.0 Consensus size: 68
67375946 TGTTTGGACA
67375956 AATAAACAGCAAGAGGCTTTTGAGAAGTTAAAGAAGGTCCTGACAGAAGTGCCAGTGTTAATTCA
1 AATAAACAGCAAGAGGCTTTTGAGAAGTTAAAGAAGGTCCTGACAGAAGTGCCAGTGTTAATTCA
67376021 GCT
66 GCT
67376024 AATAAACAGCAAGAGGCTTTTGAGAAGTTAAAGAAGGTCCTGACAGAAGTGCCAGTGTTAATTCA
1 AATAAACAGCAAGAGGCTTTTGAGAAGTTAAAGAAGGTCCTGACAGAAGTGCCAGTGTTAATTCA
67376089 GCT
66 GCT
67376092 A
1 A
67376093 GAGTCTGGTA
Statistics
Matches: 69, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
68 69 1.00
ACGTcount: A:0.37, C:0.15, G:0.25, T:0.23
Consensus pattern (68 bp):
AATAAACAGCAAGAGGCTTTTGAGAAGTTAAAGAAGGTCCTGACAGAAGTGCCAGTGTTAATTCA
GCT
Found at i:67377611 original size:40 final size:40
Alignment explanation
Indices: 67377513--67377682 Score: 225
Period size: 40 Copynumber: 4.3 Consensus size: 40
67377503 TCCTCGTTCA
* * ** *
67377513 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
67377552 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
* *
67377592 AATGGCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
* * * *
67377632 AATGCCTTCGGGACTTAACCCGGATTTAATATCTCGCACA
1 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
*
67377672 AAGGCCTTCGG
1 AATGCCTTCGG
67377683 ATCTTAGTCC
Statistics
Matches: 118, Mismatches: 12, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 34 0.29
40 84 0.71
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
Found at i:67377695 original size:40 final size:40
Alignment explanation
Indices: 67377511--67377735 Score: 199
Period size: 40 Copynumber: 5.7 Consensus size: 40
67377501 GCTCCTCGTT
* * * * ** *
67377511 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAAGGCCTTCGGGACTTAACCCGGATTTAACAACTCGCA
* *
67377551 C-AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCA
1 CAAAGGCCTTCGGGACTTAACCCGGATTTAACAACTCGCA
*
67377590 CGAATGG-CTTCGGGACTTAACCCGGATTTAACAACTCGCA
1 C-AAAGGCCTTCGGGACTTAACCCGGATTTAACAACTCGCA
* * * *
67377630 CGAATGCCTTCGGGACTTAACCCGGATTTAATATCTCGCA
1 CAAAGGCCTTCGGGACTTAACCCGGATTTAACAACTCGCA
** * * *
67377670 CAAAGGCCTTC-GGATCTTAGTCCGGATATATTC-ACTTAGCA
1 CAAAGGCCTTCGGGA-CTTAACCCGGATTTA-ACAAC-TCGCA
*
67377711 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAAGGCCTTCGGGACTTAACCCGGA
67377736 CAGCATTCAA
Statistics
Matches: 155, Mismatches: 23, Indels: 14
0.81 0.12 0.07
Matches are distributed among these distances:
39 39 0.25
40 103 0.66
41 13 0.08
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
CAAAGGCCTTCGGGACTTAACCCGGATTTAACAACTCGCA
Found at i:67377744 original size:41 final size:41
Alignment explanation
Indices: 67377667--67377744 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
67377657 TTAATATCTC
* * *
67377667 GCACAAAGGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
67377708 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAAGGCCTTC-GGATCTTAGCCCGGACA-CATTCA
67377745 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (41 bp):
GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:67390491 original size:29 final size:29
Alignment explanation
Indices: 67390428--67390495 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 29
67390418 TAATCAACCG
67390428 CGCACACTTAGTGCCATGCACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
67390457 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
67390486 CGCACACTTA
1 CGCACACTTA
67390496 CCTTTTCCGC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 3 0.09
29 31 0.91
ACGTcount: A:0.28, C:0.31, G:0.13, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:67390636 original size:29 final size:30
Alignment explanation
Indices: 67390597--67390675 Score: 110
Period size: 29 Copynumber: 2.7 Consensus size: 30
67390587 CTTAATAATC
67390597 AACCACGCACACTTAGTGCCATGTAC-TTTA
1 AACC-CGCACACTTAGTGCCATGTACATTTA
*
67390627 AACTCGCACACTTAGTG-C-TGTACAATTTA
1 AACCCGCACACTTAGTGCCATGTAC-ATTTA
67390656 AACCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
67390676 ATCTCATGAC
Statistics
Matches: 43, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
27 5 0.12
28 1 0.02
29 33 0.77
30 4 0.09
ACGTcount: A:0.30, C:0.30, G:0.14, T:0.25
Consensus pattern (30 bp):
AACCCGCACACTTAGTGCCATGTACATTTA
Found at i:67398639 original size:29 final size:29
Alignment explanation
Indices: 67398576--67398643 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 29
67398566 TAATCAACCG
67398576 CGCACACTTAGTGCCATGCACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
67398605 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
67398634 CGCACACTTA
1 CGCACACTTA
67398644 CCTTTTCCGC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 3 0.09
29 31 0.91
ACGTcount: A:0.28, C:0.31, G:0.13, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:67398756 original size:174 final size:174
Alignment explanation
Indices: 67398465--67398792 Score: 602
Period size: 174 Copynumber: 1.9 Consensus size: 174
67398455 AACTCAAGGT
* *
67398465 ACTTACCTTTTCCGCTGTCCAAAATTGACTCGGTAAAGTCGCACCCTTCATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
*
67398530 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGC
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGC
67398595 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
131 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
*
67398639 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAGGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
*
67398704 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGT
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGC
*
67398769 ACTTTAAACTCGCACACTTAGTGC
131 ACTTTAAACTCACACACTTAGTGC
67398793 TGTACAATTT
Statistics
Matches: 148, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
174 148 1.00
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.30
Consensus pattern (174 bp):
ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGC
ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
Found at i:67398784 original size:29 final size:30
Alignment explanation
Indices: 67398745--67398823 Score: 110
Period size: 29 Copynumber: 2.7 Consensus size: 30
67398735 CTTAATAATC
67398745 AACCACGCACACTTAGTGCCATGTAC-TTTA
1 AACC-CGCACACTTAGTGCCATGTACATTTA
*
67398775 AACTCGCACACTTAGTG-C-TGTACAATTTA
1 AACCCGCACACTTAGTGCCATGTAC-ATTTA
67398804 AACCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
67398824 ATCTCATGAC
Statistics
Matches: 43, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
27 5 0.12
28 1 0.02
29 33 0.77
30 4 0.09
ACGTcount: A:0.30, C:0.30, G:0.14, T:0.25
Consensus pattern (30 bp):
AACCCGCACACTTAGTGCCATGTACATTTA
Found at i:67402596 original size:46 final size:46
Alignment explanation
Indices: 67402518--67402654 Score: 204
Period size: 46 Copynumber: 2.9 Consensus size: 46
67402508 GTAAAGCCGT
*
67402518 TCTCAAATGCCGATGCATGTCCCAGACATGTCTTACACTGGCTTACA
1 TCTC-AATGCTGATGCATGTCCCAGACATGTCTTACACTGGCTTACA
* *
67402565 TCTCGAA-GCTGATGCATGTCCCAGACATGTCTTACACTGGCTTTCG
1 TCTC-AATGCTGATGCATGTCCCAGACATGTCTTACACTGGCTTACA
67402611 TCTCAATGCTGATGCCATGTCCCAGACATGGTCTTACACTGGCT
1 TCTCAATGCTGATG-CATGTCCCAGACAT-GTCTTACACTGGCT
67402655 CTCATAATGT
Statistics
Matches: 83, Mismatches: 4, Indels: 5
0.90 0.04 0.05
Matches are distributed among these distances:
45 2 0.02
46 47 0.57
47 20 0.24
48 14 0.17
ACGTcount: A:0.22, C:0.29, G:0.20, T:0.29
Consensus pattern (46 bp):
TCTCAATGCTGATGCATGTCCCAGACATGTCTTACACTGGCTTACA
Found at i:67402678 original size:94 final size:93
Alignment explanation
Indices: 67402518--67402696 Score: 238
Period size: 94 Copynumber: 1.9 Consensus size: 93
67402508 GTAAAGCCGT
* *
67402518 TCTCAAATGCCGATGCATGTCCCAGACATGTCTTACACTGGCTTACATCTCGAAGCTGATGCATG
1 TCTCAAATGCCGATGCATGTCCCAGACATGTCTTACACTGGCTTACATATCGAAGCCGATGCATG
67402583 TCCCAGACATGTCTTACACTGGCTTTCG
66 TCCCAGACATGTCTTACACTGGCTTTCG
* ** *
67402611 TCTC-AATGCTGATGCCATGTCCCAGACATGGTCTTACACTGGCTCT-CATAAT-GTGGCCGGTG
1 TCTCAAATGCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCT-TACAT-ATCGAAGCCGATG
*
67402673 CATGTCCCAGACATGTTTTACACT
62 CATGTCCCAGACATGTCTTACACT
67402697 AGAACACAAA
Statistics
Matches: 75, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
92 9 0.12
93 18 0.24
94 46 0.61
95 2 0.03
ACGTcount: A:0.22, C:0.28, G:0.20, T:0.30
Consensus pattern (93 bp):
TCTCAAATGCCGATGCATGTCCCAGACATGTCTTACACTGGCTTACATATCGAAGCCGATGCATG
TCCCAGACATGTCTTACACTGGCTTTCG
Found at i:67403077 original size:29 final size:30
Alignment explanation
Indices: 67403034--67403115 Score: 112
Period size: 30 Copynumber: 2.8 Consensus size: 30
67403024 CATAATTGGG
* *
67403034 CAAAATGACCATTTTGTCCTTAGA-TTCCA
1 CAAAATGACCATTTTGCCCCTAGACTTCCA
*
67403063 TAAAATGACCATTTTGCCCCTAGACTTCCA
1 CAAAATGACCATTTTGCCCCTAGACTTCCA
* *
67403093 CAAAATGACAATTTTACCCCTAG
1 CAAAATGACCATTTTGCCCCTAG
67403116 GTCTGAAAAT
Statistics
Matches: 46, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
29 21 0.46
30 25 0.54
ACGTcount: A:0.33, C:0.27, G:0.10, T:0.30
Consensus pattern (30 bp):
CAAAATGACCATTTTGCCCCTAGACTTCCA
Found at i:67406835 original size:22 final size:22
Alignment explanation
Indices: 67406809--67406857 Score: 71
Period size: 22 Copynumber: 2.2 Consensus size: 22
67406799 TCATGTTTCA
*
67406809 AGACAAATGAGTGTATGTCTTG
1 AGACAAAGGAGTGTATGTCTTG
* *
67406831 GGACAAAGGAGTTTATGTCTTG
1 AGACAAAGGAGTGTATGTCTTG
67406853 AGACA
1 AGACA
67406858 TGACCTTGAT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.33, C:0.10, G:0.29, T:0.29
Consensus pattern (22 bp):
AGACAAAGGAGTGTATGTCTTG
Found at i:67408312 original size:26 final size:27
Alignment explanation
Indices: 67408209--67408318 Score: 83
Period size: 26 Copynumber: 4.3 Consensus size: 27
67408199 AGCATCCTGA
*
67408209 TATATGGCTCTTTGTGAGCTTCCCAAT
1 TATATGGCTATTTGTGAGCTTCCCAAT
* *
67408236 TA-AAGGCTCTTTGTGAGCTTCCCAA-
1 TATATGGCTATTTGTGAGCTTCCCAAT
* * * *
67408261 TAT-TAGCTCA-CT-TGAACTT-CCTAT
1 TATATGGCT-ATTTGTGAGCTTCCCAAT
*
67408285 TATATGGCTATTT-AGAGCTTCCCAAT
1 TATATGGCTATTTGTGAGCTTCCCAAT
67408311 TA-ATGGCT
1 TATATGGCT
67408319 CTTCGAAGTT
Statistics
Matches: 65, Mismatches: 12, Indels: 14
0.71 0.13 0.15
Matches are distributed among these distances:
23 3 0.05
24 10 0.15
25 22 0.34
26 28 0.43
27 2 0.03
ACGTcount: A:0.24, C:0.22, G:0.16, T:0.38
Consensus pattern (27 bp):
TATATGGCTATTTGTGAGCTTCCCAAT
Found at i:67425043 original size:47 final size:48
Alignment explanation
Indices: 67424974--67425287 Score: 196
Period size: 47 Copynumber: 6.7 Consensus size: 48
67424964 GTATAATGCT
*
67424974 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCACGT-TAAGCA
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACGTCTAAGCA
* * ** *
67425021 GATGCCATGTCCCAAACATGGTCTTACACTAACTCTCACGTATCTGTGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACG--TCTAAGCA
* * * *
67425071 GATGCCATGTCCCAGATATGGTCTTAAACT-GACACATCA--TGT-AGTC-
1 GATGCCATGTCCCAGACATGGTCTTACACTAG-CTC-TCACGTCTAAG-CA
** * * *
67425117 GATG-CATGTCTTAGACAT-GTCTTACACTAGCT-TACATC-TCGAGGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCT-CA-CGTCTAAGCA
* *
67425163 GATG-CATGTCCCAAACAT-GTCTTACACTAGCTAT--CGTCTCAATGCCA
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACGTCT-AA-G-CA
* ** * * *
67425210 -ATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGT-GGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCA-CGTCTAAGCA
67425257 GATG-CATGTCCCAGACAT-GTCTTACACTAGC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGC
67425288 ACACAAATAT
Statistics
Matches: 208, Mismatches: 36, Indels: 47
0.71 0.12 0.16
Matches are distributed among these distances:
42 1 0.00
43 3 0.01
44 12 0.06
45 15 0.07
46 51 0.25
47 70 0.34
48 18 0.09
49 1 0.00
50 32 0.15
51 5 0.02
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.28
Consensus pattern (48 bp):
GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACGTCTAAGCA
Found at i:67425154 original size:46 final size:46
Alignment explanation
Indices: 67424974--67425287 Score: 195
Period size: 46 Copynumber: 6.7 Consensus size: 46
67424964 GTATAATGCT
* * *
67424974 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCT-CA-C-GTTAAGCA
1 GATG-CATGTCCCAGACAT-GTCTTACACTAGCT-TACATCTG-TAGGCC
* *
67425021 GATGCCATGTCCCAAACATGGTCTTACACTAACTCTCACGTATCTGT--GCC
1 GATG-CATGTCCCAGACAT-GTCTTACACTAGCT-T-AC--ATCTGTAGGCC
* * *
67425071 GATGCCATGTCCCAGATATGGTCTTAAACT-GAC--ACATCATGTA-GTC
1 GATG-CATGTCCCAGACAT-GTCTTACACTAG-CTTACATC-TGTAGGCC
**
67425117 GATGCATGTCTTAGACATGTCTTACACTAGCTTACATCTCG-AGGCC
1 GATGCATGTCCCAGACATGTCTTACACTAGCTTACATCT-GTAGGCC
* * ** *
67425163 GATGCATGTCCCAAACATGTCTTACACTAGC-TATCGTCTCAATGCC
1 GATGCATGTCCCAGACATGTCTTACACTAGCTTA-CATCTGTAGGCC
* * *
67425209 AATGCCATGTCCCAGACATGGTCTTACACTGGCTCT-CATAATGT-GGCC
1 GATG-CATGTCCCAGACAT-GTCTTACACTAGCT-TACAT-CTGTAGGCC
67425257 GATGCATGTCCCAGACATGTCTTACACTAGC
1 GATGCATGTCCCAGACATGTCTTACACTAGC
67425288 ACACAAATAT
Statistics
Matches: 216, Mismatches: 30, Indels: 43
0.75 0.10 0.15
Matches are distributed among these distances:
44 13 0.06
45 19 0.09
46 67 0.31
47 60 0.28
48 20 0.09
49 2 0.01
50 31 0.14
51 1 0.00
52 2 0.01
53 1 0.00
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.28
Consensus pattern (46 bp):
GATGCATGTCCCAGACATGTCTTACACTAGCTTACATCTGTAGGCC
Found at i:67427459 original size:19 final size:19
Alignment explanation
Indices: 67427435--67427471 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
67427425 AATTTATGGA
67427435 AAATGATTTACTTTTCTGG
1 AAATGATTTACTTTTCTGG
67427454 AAATGATTTACTTTTCTG
1 AAATGATTTACTTTTCTG
67427472 TTGTTTGGAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.27, C:0.11, G:0.14, T:0.49
Consensus pattern (19 bp):
AAATGATTTACTTTTCTGG
Found at i:67428853 original size:30 final size:30
Alignment explanation
Indices: 67428817--67428874 Score: 91
Period size: 30 Copynumber: 1.9 Consensus size: 30
67428807 CACGGGCTAG
67428817 CACATGGGCGTGTGGC-CAGCCCGTGTGGAT
1 CACATGGGCGT-TGGCTCAGCCCGTGTGGAT
*
67428847 CACATGGGCGTTTGCTCAGCCCGTGTGG
1 CACATGGGCGTTGGCTCAGCCCGTGTGG
67428875 GAAAAGGCTT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
29 3 0.12
30 23 0.88
ACGTcount: A:0.12, C:0.28, G:0.38, T:0.22
Consensus pattern (30 bp):
CACATGGGCGTTGGCTCAGCCCGTGTGGAT
Found at i:67430723 original size:32 final size:32
Alignment explanation
Indices: 67430686--67430754 Score: 88
Period size: 32 Copynumber: 2.2 Consensus size: 32
67430676 TAAAAGAAGT
*
67430686 CTAAAAA-AATAACAATAAAATTAGAAA-TAAAA
1 CTAAAAATAAGAA-AATAAAATT-GAAATTAAAA
67430718 CTAAAAATAAGAAAATAAAATTGAAATTAAAA
1 CTAAAAATAAGAAAATAAAATTGAAATTAAAA
*
67430750 ATAAA
1 CTAAA
67430755 TGATAAATGG
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
31 4 0.12
32 25 0.76
33 4 0.12
ACGTcount: A:0.71, C:0.04, G:0.04, T:0.20
Consensus pattern (32 bp):
CTAAAAATAAGAAAATAAAATTGAAATTAAAA
Found at i:67431906 original size:75 final size:75
Alignment explanation
Indices: 67431778--67431927 Score: 255
Period size: 75 Copynumber: 2.0 Consensus size: 75
67431768 CTAGAGTAGG
* *
67431778 GTTACGAGGTATTACCGAACAATTCACAGCATTAAGCATACATTTATCAAGCATAAGGCATTCAT
1 GTTACGAGGTATTACCGAACAATTCACAACATTAAGCATACATTTATCAAGCATAAAGCATTCAT
67431843 TCTCATAAAT
66 TCTCATAAAT
* * *
67431853 GTTATGAGGTATTACTGAACAATTCACAATATTAAGCATACATTTATCAAGCATAAAGCATTCAT
1 GTTACGAGGTATTACCGAACAATTCACAACATTAAGCATACATTTATCAAGCATAAAGCATTCAT
67431918 TCTCATAAAT
66 TCTCATAAAT
67431928 CATTCAACAC
Statistics
Matches: 70, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
75 70 1.00
ACGTcount: A:0.39, C:0.18, G:0.12, T:0.31
Consensus pattern (75 bp):
GTTACGAGGTATTACCGAACAATTCACAACATTAAGCATACATTTATCAAGCATAAAGCATTCAT
TCTCATAAAT
Found at i:67440876 original size:8 final size:8
Alignment explanation
Indices: 67440863--67440891 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
67440853 TTATGTTTAG
67440863 TATATTAT
1 TATATTAT
67440871 TATATTAT
1 TATATTAT
67440879 TATATTAT
1 TATATTAT
67440887 TATAT
1 TATAT
67440892 AATAAAGATA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (8 bp):
TATATTAT
Found at i:67440924 original size:5 final size:5
Alignment explanation
Indices: 67440914--67440945 Score: 64
Period size: 5 Copynumber: 6.4 Consensus size: 5
67440904 TTATGTTTTA
67440914 ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT AT
1 ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT AT
67440946 AAACTAAAGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 27 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (5 bp):
ATTAT
Found at i:67442236 original size:15 final size:15
Alignment explanation
Indices: 67442216--67442272 Score: 89
Period size: 15 Copynumber: 3.9 Consensus size: 15
67442206 CGATGAATTT
*
67442216 ATTGAATTTATATTG
1 ATTGAAATTATATTG
*
67442231 ATTGAAATTATTTTG
1 ATTGAAATTATATTG
67442246 ATTGAAATTATATTG
1 ATTGAAATTATATTG
67442261 ATTG-AATTATAT
1 ATTGAAATTATAT
67442273 AATATATATG
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
14 8 0.21
15 31 0.79
ACGTcount: A:0.37, C:0.00, G:0.12, T:0.51
Consensus pattern (15 bp):
ATTGAAATTATATTG
Found at i:67442692 original size:21 final size:21
Alignment explanation
Indices: 67442644--67442752 Score: 128
Period size: 21 Copynumber: 5.1 Consensus size: 21
67442634 GGCTTTATCG
* *
67442644 ATCAGGCACTTTATGTGTCGT
1 ATCAGGCACCTCATGTGTCGT
*
67442665 ATTTCAGGCACCTCGTGTGTCGT
1 A--TCAGGCACCTCATGTGTCGT
*
67442688 ATCAGGCACCTCGTGTGTCGT
1 ATCAGGCACCTCATGTGTCGT
67442709 ATCAGGCACCTCATGTGTCGT
1 ATCAGGCACCTCATGTGTCGT
* * * *
67442730 TTTAGGCACTTTATGTGTCGT
1 ATCAGGCACCTCATGTGTCGT
67442751 AT
1 AT
67442753 ACTGATCAGG
Statistics
Matches: 77, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
21 59 0.77
23 18 0.23
ACGTcount: A:0.17, C:0.23, G:0.25, T:0.36
Consensus pattern (21 bp):
ATCAGGCACCTCATGTGTCGT
Found at i:67445002 original size:32 final size:31
Alignment explanation
Indices: 67444930--67445003 Score: 85
Period size: 32 Copynumber: 2.3 Consensus size: 31
67444920 TTATTTCATT
* **
67444930 ATCCAACAAGCTTAAAACATAATAAATTCACT
1 ATCCAACAA-ATTAAAACATAATAAATTCAAA
* *
67444962 ATCTAACAAATTAAAGACATAATAATTTCAAA
1 ATCCAACAAATTAAA-ACATAATAAATTCAAA
67444994 ATCCAACAAA
1 ATCCAACAAA
67445004 CTAATTTCAA
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
31 5 0.14
32 30 0.86
ACGTcount: A:0.54, C:0.19, G:0.03, T:0.24
Consensus pattern (31 bp):
ATCCAACAAATTAAAACATAATAAATTCAAA
Found at i:67445492 original size:19 final size:19
Alignment explanation
Indices: 67445456--67445492 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
67445446 TTCAGGCCTC
*
67445456 TGAGCACTAAACTTTTTTT
1 TGAGCACTAAACTCTTTTT
*
67445475 TGAGCACTAACCTCTTTT
1 TGAGCACTAAACTCTTTT
67445493 AAATGATATC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.24, C:0.22, G:0.11, T:0.43
Consensus pattern (19 bp):
TGAGCACTAAACTCTTTTT
Found at i:67447396 original size:10 final size:12
Alignment explanation
Indices: 67447377--67447408 Score: 50
Period size: 10 Copynumber: 2.8 Consensus size: 12
67447367 CCATTCAATT
67447377 TAATTATTTAAA
1 TAATTATTTAAA
67447389 -AA-TATTTAAA
1 TAATTATTTAAA
67447399 TAATTATTTA
1 TAATTATTTA
67447409 TTTTTATTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 4
0.82 0.00 0.18
Matches are distributed among these distances:
10 8 0.44
11 4 0.22
12 6 0.33
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (12 bp):
TAATTATTTAAA
Found at i:67448425 original size:2 final size:2
Alignment explanation
Indices: 67448418--67448444 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
67448408 TTAATATCTG
67448418 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
67448445 CTCAATATGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:67449730 original size:17 final size:18
Alignment explanation
Indices: 67449708--67449744 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
67449698 CGAATTGGGC
67449708 TATGTGGG-CCACACGGG
1 TATGTGGGCCCACACGGG
*
67449725 TATGTGGGCCCACGCGGG
1 TATGTGGGCCCACACGGG
67449743 TA
1 TA
67449745 GTCTACACGG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 8 0.44
18 10 0.56
ACGTcount: A:0.16, C:0.24, G:0.41, T:0.19
Consensus pattern (18 bp):
TATGTGGGCCCACACGGG
Found at i:67457637 original size:14 final size:15
Alignment explanation
Indices: 67457613--67457644 Score: 57
Period size: 14 Copynumber: 2.2 Consensus size: 15
67457603 CTCGTAGCTT
67457613 CAATCTGCTCCACTG
1 CAATCTGCTCCACTG
67457628 CAAT-TGCTCCACTG
1 CAATCTGCTCCACTG
67457642 CAA
1 CAA
67457645 CTTCAGAGAG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 13 0.76
15 4 0.24
ACGTcount: A:0.25, C:0.38, G:0.12, T:0.25
Consensus pattern (15 bp):
CAATCTGCTCCACTG
Found at i:67457745 original size:44 final size:44
Alignment explanation
Indices: 67457632--67458163 Score: 413
Period size: 44 Copynumber: 11.7 Consensus size: 44
67457622 CCACTGCAAT
* * *
67457632 TGCTCCACTGCAACTTCAGAGAGATAAGATTTTCTA-TTTTCAATC
1 TGCTCCACTGCAACTTCAGGGAGATAAGA-TTTGTAGCTTT-AATC
* * * *
67457677 TACTCCACTGTAACTTCAGGGAGATAAGGTTTATAGCTTTAATC
1 TGCTCCACTGCAACTTCAGGGAGATAAGATTTGTAGCTTTAATC
* ** * * * **
67457721 TGCTCTACTGTGACTTTAGAGAGATAAGATTTGCTATCTTCGATC
1 TGCTCCACTGCAACTTCAGGGAGATAAGATTTG-TAGCTTTAATC
* * * * *
67457766 TACTCTACTACAACTTCAGAGAGATAAGATTTGTAATTTGTAGCTTTAAGC
1 TGCTCCACTGCAACTTCAGGGAGAT-A-A---G--ATTTGTAGCTTTAATC
* * *
67457817 TGTTCCACTGCAACTTCAGGCAGATAAGATTTATAGCTTTAATC
1 TGCTCCACTGCAACTTCAGGGAGATAAGATTTGTAGCTTTAATC
* * * * * *
67457861 TGCTCTACTGCAATTTCAGAGAGATAAGATTTGCTATCTTCAGTC
1 TGCTCCACTGCAACTTCAGGGAGATAAGATTTG-TAGCTTTAATC
* * * *
67457906 TGCTCCACTGCAACTTTAGGGAGATAAGACTTGTA-ATTTCAACC
1 TGCTCCACTGCAACTTCAGGGAGATAAGATTTGTAGCTTT-AATC
* * *
67457950 TGCTCCATTGCAACTTCAGGGAGATAAGGTTTGTGGCTTTAATC
1 TGCTCCACTGCAACTTCAGGGAGATAAGATTTGTAGCTTTAATC
* *
67457994 TGCTCTACTGCAACTTCAGGGAGATAAGATTCGTAGCTTGTCTTCAATC
1 TGCTCCACTGCAACTTCAGGGAGATAAGATTTGTAGC---T-TT-AATC
* ** * * ** *
67458043 TACTCCACTATAACTTTAAGGAGATAAGATTTGTTTATTTTTAACC
1 TGCTCCACTGCAACTTCAGGGAGATAAGATTTG--TAGCTTTAATC
* * * *
67458089 TGCTCCACTGCAATTTTAGGGAGATAAGGTTTGT-GTCTTTAGTC
1 TGCTCCACTGCAACTTCAGGGAGATAAGATTTGTAG-CTTTAATC
67458133 TGCTCCACTGCAACTTCAGGGAGATAAGATT
1 TGCTCCACTGCAACTTCAGGGAGATAAGATT
67458164 CGCCATGGTA
Statistics
Matches: 381, Mismatches: 86, Indels: 41
0.75 0.17 0.08
Matches are distributed among these distances:
43 2 0.01
44 179 0.47
45 95 0.25
46 32 0.08
47 4 0.01
48 3 0.01
49 31 0.08
50 2 0.01
51 28 0.07
52 5 0.01
ACGTcount: A:0.28, C:0.19, G:0.18, T:0.35
Consensus pattern (44 bp):
TGCTCCACTGCAACTTCAGGGAGATAAGATTTGTAGCTTTAATC
Found at i:67457783 original size:89 final size:89
Alignment explanation
Indices: 67457632--67458160 Score: 420
Period size: 89 Copynumber: 5.8 Consensus size: 89
67457622 CCACTGCAAT
* * *
67457632 TGCTCCACTGCAACTTCAGAGAGATAAGATTTTCTATTTTCAATCTACTCCACTGTAACTTCAGG
1 TGCTCCACTGCAACTTCAGAGAGATAAGATTTGCTATCTTCAATCTACTCCACTGCAACTTCAGG
*
67457697 GAGATAAGGTTTATAGCTTTAATC
66 GAGATAAGGTTTGTAGCTTTAATC
* ** * * * * *
67457721 TGCTCTACTGTGACTTTAGAGAGATAAGATTTGCTATCTTCGATCTACTCTACTACAACTTCAGA
1 TGCTCCACTGCAACTTCAGAGAGATAAGATTTGCTATCTTCAATCTACTCCACTGCAACTTCAGG
*
67457786 GAGATAAGATTTGTAATTTGTAGCTTTAAGC
66 GAGATAAG----G---TTTGTAGCTTTAATC
* * * * * * *
67457817 TGTTCCACTGCAACTTCAG-GCAGATAAGATTT-ATAGCTTTAATCTGCTCTACTGCAATTTCAG
1 TGCTCCACTGCAACTTCAGAG-AGATAAGATTTGCTATCTTCAATCTACTCCACTGCAACTTCAG
* * * * *
67457880 AGAGATAAGATTTGCTATCTTCAGTC
65 GGAGATAAGGTTTG-TAGCTTTAATC
* * * * * *
67457906 TGCTCCACTGCAACTTTAGGGAGATAAGACTTG-TAAT-TTCAACCTGCTCCATTGCAACTTCAG
1 TGCTCCACTGCAACTTCAGAGAGATAAGATTTGCT-ATCTTCAATCTACTCCACTGCAACTTCAG
*
67457969 GGAGATAAGGTTTGTGGCTTTAATC
65 GGAGATAAGGTTTGTAGCTTTAATC
* * * **
67457994 TGCTCTACTGCAACTTCAGGGAGATAAGATTCGTAGCTTGTCTTCAATCTACTCCACTATAACTT
1 TGCTCCACTGCAACTTCAGAGAGATAAGATT--T-GC-TATCTTCAATCTACTCCACTGCAACTT
* * * ** *
67458059 TAAGGAGATAAGATTTGTTTATTTTTAACC
62 CAGGGAGATAAGGTTTG--TAGCTTTAATC
* * * * * * * *
67458089 TGCTCCACTGCAATTTTAGGGAGATAAGGTTTG-TGTCTTTAGTCTGCTCCACTGCAACTTCAGG
1 TGCTCCACTGCAACTTCAGAGAGATAAGATTTGCTATCTTCAATCTACTCCACTGCAACTTCAGG
67458153 GAGATAAG
66 GAGATAAG
67458161 ATTCGCCATG
Statistics
Matches: 348, Mismatches: 72, Indels: 39
0.76 0.16 0.08
Matches are distributed among these distances:
88 39 0.11
89 130 0.37
90 35 0.10
91 1 0.00
92 2 0.01
93 35 0.10
95 68 0.20
96 38 0.11
ACGTcount: A:0.28, C:0.19, G:0.19, T:0.35
Consensus pattern (89 bp):
TGCTCCACTGCAACTTCAGAGAGATAAGATTTGCTATCTTCAATCTACTCCACTGCAACTTCAGG
GAGATAAGGTTTGTAGCTTTAATC
Found at i:67457888 original size:140 final size:136
Alignment explanation
Indices: 67457634--67458163 Score: 555
Period size: 140 Copynumber: 3.9 Consensus size: 136
67457624 ACTGCAATTG
* * * * * *
67457634 CTCCACTGCAACTTCAGAGAGATAAGATTT-TCTATTTTC---AATCTACTCCACTGTAACTTCA
1 CTCCACTACAACTTTAGAGAGATAAGATTTGT-AATTTTCTTTAACCTGCTCCACTGCAACTTCA
** *
67457695 GGGAGATAAGGTTTATAGCTTTAATCTGCTCTACTGTGACTTTAGAGAGATAAGATTTGCTATCT
65 GGGAGATAAGGTTTATAGCTTTAATCTGCTCTACTGCAACTTCAGAGAGATAAGATTTGCTATCT
67457760 TCGATCTA
130 TC-ATCTA
* * * *
67457768 CTCTACTACAACTTCAGAGAGATAAGATTTGTAATTTGTAGCTTTAAGCTGTTCCACTGCAACTT
1 CTCCACTACAACTTTAGAGAGATAAGATTTGTAATTT-T--CTTTAACCTGCTCCACTGCAACTT
* * *
67457833 CAGGCAGATAAGATTTATAGCTTTAATCTGCTCTACTGCAATTTCAGAGAGATAAGATTTGCTAT
63 CAGGGAGATAAGGTTTATAGCTTTAATCTGCTCTACTGCAACTTCAGAGAGATAAGATTTGCTAT
*
67457898 CTTCAGTCTG
128 CTTCA-TCTA
* * * *
67457908 CTCCACTGCAACTTTAGGGAGATAAGACTTGTAA-TTTC---AACCTGCTCCATTGCAACTTCAG
1 CTCCACTACAACTTTAGAGAGATAAGATTTGTAATTTTCTTTAACCTGCTCCACTGCAACTTCAG
* * * *
67457969 GGAGATAAGGTTTGTGGCTTTAATCTGCTCTACTGCAACTTCAGGGAGATAAGATTCGTAGCTTG
66 GGAGATAAGGTTTATAGCTTTAATCTGCTCTACTGCAACTTCAGAGAGATAAGATT--T-GC-TA
67458034 TCTTCAATCTA
127 TCTTC-ATCTA
* * *
67458045 CTCCACTATAACTTTA-AGGAGATAAGATTTGT--TTATT-TTTAACCTGCTCCACTGCAATTTT
1 CTCCACTACAACTTTAGA-GAGATAAGATTTGTAATT-TTCTTTAACCTGCTCCACTGCAACTTC
* * * *
67458106 AGGGAGATAAGGTTTGT-GTCTTTAGTCTGCTCCACTGCAACTTCAGGGAGATAAGATT
64 AGGGAGATAAGGTTTATAG-CTTTAATCTGCTCTACTGCAACTTCAGAGAGATAAGATT
67458164 CGCCATGGTA
Statistics
Matches: 337, Mismatches: 39, Indels: 35
0.82 0.09 0.09
Matches are distributed among these distances:
133 70 0.21
134 32 0.09
135 3 0.01
136 4 0.01
137 39 0.12
138 3 0.01
139 75 0.22
140 111 0.33
ACGTcount: A:0.28, C:0.19, G:0.18, T:0.35
Consensus pattern (136 bp):
CTCCACTACAACTTTAGAGAGATAAGATTTGTAATTTTCTTTAACCTGCTCCACTGCAACTTCAG
GGAGATAAGGTTTATAGCTTTAATCTGCTCTACTGCAACTTCAGAGAGATAAGATTTGCTATCTT
CATCTA
Found at i:67488953 original size:31 final size:34
Alignment explanation
Indices: 67488882--67488954 Score: 89
Period size: 36 Copynumber: 2.2 Consensus size: 34
67488872 ATGATTAAAC
*
67488882 AATTTAATAATATAAATAGTACAAAATATGAAATTT
1 AATTTAATAATATAAATAGT--AAAATATGAAATTA
*
67488918 AATTTAATAATATAAATAGT-AGATAT-AAA-TA
1 AATTTAATAATATAAATAGTAAAATATGAAATTA
67488949 AATTTA
1 AATTTA
67488955 TTACTATTTA
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
31 7 0.20
32 3 0.09
33 5 0.14
36 20 0.57
ACGTcount: A:0.56, C:0.01, G:0.05, T:0.37
Consensus pattern (34 bp):
AATTTAATAATATAAATAGTAAAATATGAAATTA
Found at i:67493261 original size:47 final size:47
Alignment explanation
Indices: 67493200--67493367 Score: 164
Period size: 47 Copynumber: 3.6 Consensus size: 47
67493190 TATGAGAGCC
67493200 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATCAAGACAAGTGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCAT-AAGACAAGTGCT
* ** *
67493248 AGTGTAAGA-CATGTCTGGGATAT-GCATCGGCTATGGGATGATAGT-C-
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGC-ATAAGA-CA-AGTGCT
* * * * *
67493294 AGGGTAAGACCATGTCTGGGACATGGCATCGACATGAGACATGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATAAGACAAGTGCT
* * *
67493341 AGTGTAAAACCGTGTCTAGGACATGGC
1 AGTGTAAGACCATGTCTGGGACATGGC
67493368 GTCAGCACCT
Statistics
Matches: 98, Mismatches: 15, Indels: 15
0.77 0.12 0.12
Matches are distributed among these distances:
45 1 0.01
46 20 0.20
47 58 0.59
48 19 0.19
ACGTcount: A:0.29, C:0.18, G:0.31, T:0.23
Consensus pattern (47 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCATAAGACAAGTGCT
Found at i:67494525 original size:21 final size:21
Alignment explanation
Indices: 67494495--67494534 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
67494485 TTGAATTGTC
67494495 CACACAGGCATGTGCCCCTTT
1 CACACAGGCATGTGCCCCTTT
*
67494516 CACACGGGCATGTGCCCCT
1 CACACAGGCATGTGCCCCT
67494535 ATGTCAAGTG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.17, C:0.40, G:0.23, T:0.20
Consensus pattern (21 bp):
CACACAGGCATGTGCCCCTTT
Found at i:67500914 original size:155 final size:153
Alignment explanation
Indices: 67500716--67501130 Score: 522
Period size: 155 Copynumber: 2.7 Consensus size: 153
67500706 GAATTTTTTT
* * * *
67500716 AAAAAGAGAAAATTTAAATTTT-AACAAATAAAAATTTGTTTTTTT-GTTATTTTAAAGGAAATT
1 AAAAAGAGAAAATTTAGATTTTGAA-AAATAAAAATCTATTTTTTTAGTTATTTTAAAGGAAAGT
* * * *
67500779 TTAAAATTTTAAAACAAAGATTTGATTTTTTTTTCAAGTATTTCAAAGTAAAAGCTTTAATATTT
65 TTAAAATTTTAAAACAAAGATTTGAATTTTTTTTCAACTATTTCAAAATAAAAGCTTTAATATAT
*
67500844 AAGAAAAATAACATTTTTTTTTTCAAA
130 AAG-AAAATAA-ATTATTTTTTT-AAA
* *
67500871 AAAAAGAGAAATTTTAGATTTTGAAAAATAAAAATCTACTTTTTTTAGTCATTTTAAAGGAAAGT
1 AAAAAGAGAAAATTTAGATTTTGAAAAATAAAAATCTA-TTTTTTTAGTTATTTTAAAGGAAAGT
* * *
67500936 TTAAAATTTTAAAATAAA-ATTTTGAATTTTTTTTCAACTATTTTAAAATAAAAGCTTTAATCTA
65 TTAAAATTTTAAAACAAAGA-TTTGAATTTTTTTTCAACTATTTCAAAATAAAAGCTTTAATATA
* *
67501000 TAAGAAAATTAGTTATTTTTTTAAA
129 TAAGAAAATAAATTATTTTTTTAAA
67501025 AAAAAGGAGAAAATTTAGATTTTG-AAAATAAAAATCTATTTTTTTAAAGTCT-TTTTAAAGGAA
1 AAAAA-GAGAAAATTTAGATTTTGAAAAATAAAAATCTATTTTTTT--AGT-TATTTTAAAGGAA
* *
67501088 AGTTTAAATTTTTAAAACAAAG-TTT-AAATTTTTTT-AACTATTT
62 AGTTTAAAATTTTAAAACAAAGATTTGAATTTTTTTTCAACTATTT
67501131 TCTTCCACAT
Statistics
Matches: 230, Mismatches: 21, Indels: 21
0.85 0.08 0.08
Matches are distributed among these distances:
152 8 0.03
153 16 0.07
154 25 0.11
155 90 0.39
156 16 0.07
157 75 0.33
ACGTcount: A:0.45, C:0.04, G:0.08, T:0.43
Consensus pattern (153 bp):
AAAAAGAGAAAATTTAGATTTTGAAAAATAAAAATCTATTTTTTTAGTTATTTTAAAGGAAAGTT
TAAAATTTTAAAACAAAGATTTGAATTTTTTTTCAACTATTTCAAAATAAAAGCTTTAATATATA
AGAAAATAAATTATTTTTTTAAA
Found at i:67501101 original size:20 final size:20
Alignment explanation
Indices: 67501076--67501120 Score: 72
Period size: 20 Copynumber: 2.2 Consensus size: 20
67501066 TTTTAAAGTC
**
67501076 TTTTTAAAGGAAAGTTTAAA
1 TTTTTAAAACAAAGTTTAAA
67501096 TTTTTAAAACAAAGTTTAAA
1 TTTTTAAAACAAAGTTTAAA
67501116 TTTTT
1 TTTTT
67501121 TTAACTATTT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.42, C:0.02, G:0.09, T:0.47
Consensus pattern (20 bp):
TTTTTAAAACAAAGTTTAAA
Found at i:67501120 original size:21 final size:21
Alignment explanation
Indices: 67501067--67501121 Score: 67
Period size: 20 Copynumber: 2.6 Consensus size: 21
67501057 AATCTATTTT
**
67501067 TTTAAAGTCTTTTTAAAGGAAAG
1 TTTAAA-T-TTTTTAAAACAAAG
67501090 TTTAAA-TTTTTAAAACAAAG
1 TTTAAATTTTTTAAAACAAAG
67501110 TTTAAATTTTTT
1 TTTAAATTTTTT
67501122 TAACTATTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
20 18 0.62
21 5 0.17
23 6 0.21
ACGTcount: A:0.40, C:0.04, G:0.09, T:0.47
Consensus pattern (21 bp):
TTTAAATTTTTTAAAACAAAG
Found at i:67501337 original size:10 final size:10
Alignment explanation
Indices: 67501302--67501360 Score: 55
Period size: 10 Copynumber: 5.6 Consensus size: 10
67501292 CACTTGTATA
67501302 ATTTTTATTT
1 ATTTTTATTT
*
67501312 ATTCTTATTTT
1 ATTTTTA-TTT
*
67501323 GTTTTTATTT
1 ATTTTTATTT
*
67501333 ATTTTCATGTCT
1 ATTTTTAT-T-T
*
67501345 ATTTATATTT
1 ATTTTTATTT
67501355 ATTTTT
1 ATTTTT
67501361 TTACACATTC
Statistics
Matches: 38, Mismatches: 8, Indels: 6
0.73 0.15 0.12
Matches are distributed among these distances:
10 21 0.55
11 10 0.26
12 7 0.18
ACGTcount: A:0.19, C:0.05, G:0.03, T:0.73
Consensus pattern (10 bp):
ATTTTTATTT
Found at i:67508460 original size:6 final size:6
Alignment explanation
Indices: 67508449--67508514 Score: 73
Period size: 6 Copynumber: 10.7 Consensus size: 6
67508439 CCAATCTTTC
*
67508449 TTTTTA TTTTTA TTTTTA CTTTTA TTTTTTA TTATTTA TTATTT- TCTTTTA
1 TTTTTA TTTTTA TTTTTA TTTTTA -TTTTTA TT-TTTA TT-TTTA T-TTTTA
67508500 TTTTTA -TTTTA TTTT
1 TTTTTA TTTTTA TTTT
67508515 AGTTAAATAT
Statistics
Matches: 53, Mismatches: 2, Indels: 10
0.82 0.03 0.15
Matches are distributed among these distances:
5 5 0.09
6 31 0.58
7 17 0.32
ACGTcount: A:0.17, C:0.03, G:0.00, T:0.80
Consensus pattern (6 bp):
TTTTTA
Found at i:67508490 original size:17 final size:16
Alignment explanation
Indices: 67508462--67508515 Score: 65
Period size: 16 Copynumber: 3.3 Consensus size: 16
67508452 TTATTTTTAT
*
67508462 TTTTACTTTTATTTT-
1 TTTTATTTTTATTTTC
67508477 TTATTATTTATTATTTTC
1 TT-TTATTT-TTATTTTC
*
67508495 TTTTATTTTTATTTTA
1 TTTTATTTTTATTTTC
67508511 TTTTA
1 TTTTA
67508516 GTTAAATATT
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
15 2 0.06
16 17 0.50
17 13 0.38
18 2 0.06
ACGTcount: A:0.19, C:0.04, G:0.00, T:0.78
Consensus pattern (16 bp):
TTTTATTTTTATTTTC
Found at i:67513593 original size:12 final size:13
Alignment explanation
Indices: 67513576--67513607 Score: 57
Period size: 12 Copynumber: 2.5 Consensus size: 13
67513566 TAAACAAAAA
67513576 ACAAAAATAAAT-
1 ACAAAAATAAATC
67513588 ACAAAAATAAATC
1 ACAAAAATAAATC
67513601 ACAAAAA
1 ACAAAAA
67513608 ATGTTACAAC
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 12 0.63
13 7 0.37
ACGTcount: A:0.75, C:0.12, G:0.00, T:0.12
Consensus pattern (13 bp):
ACAAAAATAAATC
Found at i:67530628 original size:131 final size:131
Alignment explanation
Indices: 67530394--67530650 Score: 363
Period size: 131 Copynumber: 2.0 Consensus size: 131
67530384 TAATTATTCA
* * * * *
67530394 TTTAAAAATTCTTTAAAACGAAGGCGATGTTCGATGTTTGGCAATTCGCGGAATCGTGCCCTATC
1 TTTAAAAACTCTTTAAAACGAAGGCAATATTCGATGTTTGGAAATTCGCGGAATAGTGCCCTATC
* *
67530459 GTGCTGGGTTGCAATTTCTCGTTTGTTCAAAATAATCAAATGTCCCTTTAGAATTTCACTCATGT
66 GTGCTGGGTTGCAATTTCCCGTTTGTTCAAAATAATCAAATATCCCTTTAGAATTTCACTCATGT
67530524 C
131 C
* * *
67530525 TTTAAAAACTCTTTAAAGCGAAGGCAATATTTGATGTTTGGAAATTCAG-TGAATAGTGCCCTAT
1 TTTAAAAACTCTTTAAAACGAAGGCAATATTCGATGTTTGGAAATTC-GCGGAATAGTGCCCTAT
* * * * *
67530589 CGTGTTGGGTTTCGATTTCCCGTTTGTTCAAAATAATCAAATATTCCTTTGGAATTTCACTC
65 CGTGCTGGGTTGCAATTTCCCGTTTGTTCAAAATAATCAAATATCCCTTTAGAATTTCACTC
67530651 GTGTTTTCTA
Statistics
Matches: 110, Mismatches: 15, Indels: 2
0.87 0.12 0.02
Matches are distributed among these distances:
131 109 0.99
132 1 0.01
ACGTcount: A:0.27, C:0.18, G:0.18, T:0.37
Consensus pattern (131 bp):
TTTAAAAACTCTTTAAAACGAAGGCAATATTCGATGTTTGGAAATTCGCGGAATAGTGCCCTATC
GTGCTGGGTTGCAATTTCCCGTTTGTTCAAAATAATCAAATATCCCTTTAGAATTTCACTCATGT
C
Found at i:67534510 original size:9 final size:9
Alignment explanation
Indices: 67534493--67534529 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
67534483 ATTTTAGGGC
67534493 TTCAATCTT
1 TTCAATCTT
*
67534502 TTAAATCTT
1 TTCAATCTT
67534511 TTCAATCTT
1 TTCAATCTT
67534520 TTCAATCTT
1 TTCAATCTT
67534529 T
1 T
67534530 CTTGTATATT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.24, C:0.19, G:0.00, T:0.57
Consensus pattern (9 bp):
TTCAATCTT
Found at i:67535465 original size:26 final size:25
Alignment explanation
Indices: 67535436--67535547 Score: 71
Period size: 26 Copynumber: 4.2 Consensus size: 25
67535426 ATTATTCACC
67535436 TTAAATTGTGTTAGATATTATTTATT
1 TTAAATTGT-TTAGATATTATTTATT
* * * *
67535462 TTAAATTATGTCATATATTATCTATTT
1 TTAAATTGT-TTAGATATTATTTA-TT
* * *
67535489 TTGAATTGCTTTATATTTTATTTTATT
1 TTAAATTG-TTTAGATATTA-TTTATT
* * * *
67535516 TCAAATTGTTTTGTATTTTATTTATG
1 TTAAATTGTTTAG-ATATTATTTATT
67535542 TTAAAT
1 TTAAAT
67535548 CTTTTTCATA
Statistics
Matches: 67, Mismatches: 15, Indels: 8
0.74 0.17 0.09
Matches are distributed among these distances:
26 33 0.49
27 30 0.45
28 4 0.06
ACGTcount: A:0.29, C:0.04, G:0.08, T:0.60
Consensus pattern (25 bp):
TTAAATTGTTTAGATATTATTTATT
Found at i:67540050 original size:14 final size:14
Alignment explanation
Indices: 67540013--67540050 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 14
67540003 TATTAAAAAT
67540013 TTTAAAATT-TTTA
1 TTTAAAATTATTTA
* *
67540026 TTTATACTTATTTA
1 TTTAAAATTATTTA
67540040 TTTAAAATTAT
1 TTTAAAATTAT
67540051 GTGTTTTCAT
Statistics
Matches: 20, Mismatches: 4, Indels: 1
0.80 0.16 0.04
Matches are distributed among these distances:
13 7 0.35
14 13 0.65
ACGTcount: A:0.37, C:0.03, G:0.00, T:0.61
Consensus pattern (14 bp):
TTTAAAATTATTTA
Found at i:67543065 original size:12 final size:12
Alignment explanation
Indices: 67543041--67543078 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
67543031 TACAAGTTTT
67543041 AAAAAATC-AAA
1 AAAAAATCTAAA
*
67543052 AAGAAAATTTAAA
1 AA-AAAATCTAAA
67543065 AAAAAATCTAAA
1 AAAAAATCTAAA
67543077 AA
1 AA
67543079 GGTAAATATT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
11 2 0.09
12 16 0.70
13 5 0.22
ACGTcount: A:0.76, C:0.05, G:0.03, T:0.16
Consensus pattern (12 bp):
AAAAAATCTAAA
Found at i:67544793 original size:19 final size:19
Alignment explanation
Indices: 67544759--67544800 Score: 59
Period size: 18 Copynumber: 2.2 Consensus size: 19
67544749 TGACCCTTTT
*
67544759 TTTTTTCCCAAATTTTC-A
1 TTTTTTCCAAAATTTTCTA
67544777 TTTTTTCCAAAATTTTTCTA
1 TTTTTTCCAAAA-TTTTCTA
67544797 TTTT
1 TTTT
67544801 GTTTCGAATT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 11 0.52
19 5 0.24
20 5 0.24
ACGTcount: A:0.21, C:0.17, G:0.00, T:0.62
Consensus pattern (19 bp):
TTTTTTCCAAAATTTTCTA
Found at i:67545051 original size:27 final size:27
Alignment explanation
Indices: 67545012--67545154 Score: 223
Period size: 27 Copynumber: 5.3 Consensus size: 27
67545002 TACACGTCAG
*
67545012 GAAAGGAATGCCTTTGTGGCGCAATAT
1 GAAAGGAATGCCTTTGTGGCACAATAT
* *
67545039 AAAAGGAATGCCTTTGTGGCATAATAT
1 GAAAGGAATGCCTTTGTGGCACAATAT
67545066 GAAAGGAATGCCTTTGTGGCACAATAT
1 GAAAGGAATGCCTTTGTGGCACAATAT
**
67545093 GAAAGGAACACCTTTGTGGCACAATAT
1 GAAAGGAATGCCTTTGTGGCACAATAT
* *
67545120 GAAAAGAATGCCTTTGTGGCGCAATAT
1 GAAAGGAATGCCTTTGTGGCACAATAT
67545147 GAAAGGAA
1 GAAAGGAA
67545155 CACCTGTCAA
Statistics
Matches: 104, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 104 1.00
ACGTcount: A:0.36, C:0.14, G:0.26, T:0.24
Consensus pattern (27 bp):
GAAAGGAATGCCTTTGTGGCACAATAT
Found at i:67546000 original size:18 final size:17
Alignment explanation
Indices: 67545975--67546022 Score: 60
Period size: 18 Copynumber: 2.8 Consensus size: 17
67545965 AAAAAATAAA
67545975 AAAATGATAATAACAAC
1 AAAATGATAATAACAAC
* *
67545992 AATAATGATAATGATAAC
1 AA-AATGATAATAACAAC
*
67546010 AAAATAATAATAA
1 AAAATGATAATAA
67546023 TAAAATCTAA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
17 11 0.42
18 15 0.58
ACGTcount: A:0.65, C:0.06, G:0.06, T:0.23
Consensus pattern (17 bp):
AAAATGATAATAACAAC
Found at i:67546017 original size:20 final size:21
Alignment explanation
Indices: 67545984--67546023 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
67545974 AAAAATGATA
*
67545984 ATAACAACAATAATGATAATG
1 ATAACAACAATAATAATAATG
67546005 ATAACAA-AATAATAATAAT
1 ATAACAACAATAATAATAAT
67546024 AAAATCTAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 11 0.61
21 7 0.39
ACGTcount: A:0.62, C:0.07, G:0.05, T:0.25
Consensus pattern (21 bp):
ATAACAACAATAATAATAATG
Found at i:67546313 original size:46 final size:47
Alignment explanation
Indices: 67546257--67546352 Score: 185
Period size: 47 Copynumber: 2.1 Consensus size: 47
67546247 TTAAATAGAC
67546257 TAAGGATTGAATTGAAATT-AAAGGGAGTTTTGGGCTTAAATTATAA
1 TAAGGATTGAATTGAAATTAAAAGGGAGTTTTGGGCTTAAATTATAA
67546303 TAAGGATTGAATTGAAATTAAAAGGGAGTTTTGGGCTTAAATTATAA
1 TAAGGATTGAATTGAAATTAAAAGGGAGTTTTGGGCTTAAATTATAA
67546350 TAA
1 TAA
67546353 AATAAATGTA
Statistics
Matches: 49, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
46 19 0.39
47 30 0.61
ACGTcount: A:0.41, C:0.02, G:0.23, T:0.34
Consensus pattern (47 bp):
TAAGGATTGAATTGAAATTAAAAGGGAGTTTTGGGCTTAAATTATAA
Found at i:67552120 original size:39 final size:40
Alignment explanation
Indices: 67552075--67552246 Score: 222
Period size: 40 Copynumber: 4.3 Consensus size: 40
67552065 GCTCCTCGTT
* * *
67552075 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
*
67552115 C-AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * *
67552154 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * * *
67552194 CAAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGG-ATTTAGTAACTCGCA
67552234 CAAATGCCTTCGG
1 CAAATGCCTTCGG
67552247 ATCTTAGTCC
Statistics
Matches: 119, Mismatches: 11, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
39 35 0.29
40 80 0.67
41 4 0.03
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
Found at i:67552175 original size:40 final size:39
Alignment explanation
Indices: 67552077--67552299 Score: 216
Period size: 40 Copynumber: 5.6 Consensus size: 39
67552067 TCCTCGTTCA
* * * *
67552077 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* *
67552116 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
*
67552155 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* * *
67552195 AAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCAC
** * * * *
67552235 AAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
1 -AATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCAC
* *
67552276 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
67552300 CAGCATTCAA
Statistics
Matches: 157, Mismatches: 21, Indels: 11
0.83 0.11 0.06
Matches are distributed among these distances:
39 40 0.25
40 105 0.67
41 12 0.08
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.26
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
Found at i:67552259 original size:80 final size:79
Alignment explanation
Indices: 67552075--67552299 Score: 240
Period size: 80 Copynumber: 2.8 Consensus size: 79
67552065 GCTCCTCGTT
* * * * *
67552075 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGG-
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGT-ACTCGCACAAAGCCTTCGGGACTTAACCCGGA
67552139 ATTTAATAACTCGCA
65 ATTTAATAACTCGCA
* * *
67552154 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCGGGGCTTAACCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTA-CTCGCACAAA-GCCTTCGGGACTTAACCCGG
* *
67552219 AATTT-GTATCTCGCA
64 AATTTAATAACTCGCA
* * * * *
67552234 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCACAAAGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGT-AC-TCGCACAAAGCCTTCGGGACTTAACCCG
67552298 GA
63 GA
67552300 CAGCATTCAA
Statistics
Matches: 122, Mismatches: 18, Indels: 11
0.81 0.12 0.07
Matches are distributed among these distances:
78 1 0.01
79 39 0.32
80 69 0.57
81 13 0.11
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (79 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTACTCGCACAAAGCCTTCGGGACTTAACCCGGAA
TTTAATAACTCGCA
Found at i:67552308 original size:41 final size:41
Alignment explanation
Indices: 67552231--67552308 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
67552221 TTTGTATCTC
* * *
67552231 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
67552272 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
67552309 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:67556684 original size:14 final size:13
Alignment explanation
Indices: 67556656--67556692 Score: 58
Period size: 14 Copynumber: 2.8 Consensus size: 13
67556646 ATCCTGGAAT
67556656 ATTAA-AACAATA
1 ATTAAGAACAATA
67556668 ATTAAGAACACATA
1 ATTAAGAACA-ATA
67556682 ATTAAGAACAA
1 ATTAAGAACAA
67556693 ATCAAATATT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
12 5 0.22
13 5 0.22
14 13 0.57
ACGTcount: A:0.62, C:0.11, G:0.05, T:0.22
Consensus pattern (13 bp):
ATTAAGAACAATA
Found at i:67558305 original size:44 final size:44
Alignment explanation
Indices: 67558200--67558760 Score: 347
Period size: 44 Copynumber: 12.6 Consensus size: 44
67558190 TCATTCCAAC
* * *
67558200 CCACTGCAACTTCAGGG-GTGTAAGAATT-GTCGCTTCAATATGCT
1 CCACTGCAACTTCAGGGAG-ATAAG-ATTAGTAGCTTCAATCTGCT
* * *
67558244 TCATTGCAACTTTAGGGAGATAAGATTAGTAGCTTCAATCTGCT
1 CCACTGCAACTTCAGGGAGATAAGATTAGTAGCTTCAATCTGCT
* * * * * ** *
67558288 CCACTGTAACTCCAGGGAAATAAGATTCGCATATTCAATTTGCT
1 CCACTGCAACTTCAGGGAGATAAGATTAGTAGCTTCAATCTGCT
* ***
67558332 CCACTGCAACTTCAAGGAGATAAGATTTGTAACTTGTAGCATT-AATCCATT
1 CCACTGCAACTTCAGGGAGATAAGA--T-T-A---GTAGC-TTCAATCTGCT
* * * *
67558383 CCACTGCAACTTCAGGGAAATAAGATTCA-CATCTTCACTCTGCT
1 CCACTGCAACTTCAGGGAGATAAGATT-AGTAGCTTCAATCTGCT
* * * * * *
67558427 CCACTACAACTTTAGGGAGACAAGGTTTGCTATCTTCAATCTGCT
1 CCACTGCAACTTCAGGGAGATAAGATTAG-TAGCTTCAATCTGCT
*
67558472 CCACTGCAACTTCAGGGAGATAAGACTTA-TAGCTTCAA-CTTTCT
1 CCACTGCAACTTCAGGGAGATAAGA-TTAGTAGCTTCAATC-TGCT
* * * * *
67558516 TCATTGCAACTTCAGGGAGATAAGGTTTA-TAGCTTTAATATGCT
1 CCACTGCAACTTCAGGGAGATAA-GATTAGTAGCTTCAATCTGCT
* * * * * * *
67558560 CTATTGCAAATTCAGGGAGATAAAATTTGTTATCTTCAATATGCT
1 CCACTGCAACTTCAGGGAGATAAGATTAG-TAGCTTCAATCTGCT
* * *
67558605 CCACTGCAACTTCA-GG-G-TAAGGTTTA-TAGCTTTAATCTACT
1 CCACTGCAACTTCAGGGAGATAA-GATTAGTAGCTTCAATCTGCT
* * *
67558646 CCACTGTAACTTTAGGGAGATAAGATTTA-TAGCTTTAATCTGCT
1 CCACTGCAACTTCAGGGAGATAAGA-TTAGTAGCTTCAATCTGCT
** * * * * *
67558690 TTACTACAACTTTAAGGAGATAAGATTAGT-GACTTCAACCTTCT
1 CCACTGCAACTTCAGGGAGATAAGATTAGTAG-CTTCAATCTGCT
* * *
67558734 CCACCGTAACTTTAGGGAGATAAGATT
1 CCACTGCAACTTCAGGGAGATAAGATT
67558761 TGCCATAGTG
Statistics
Matches: 396, Mismatches: 95, Indels: 52
0.73 0.17 0.10
Matches are distributed among these distances:
41 23 0.06
42 5 0.01
43 17 0.04
44 253 0.64
45 60 0.15
46 3 0.01
47 1 0.00
48 2 0.01
49 1 0.00
51 29 0.07
52 2 0.01
ACGTcount: A:0.30, C:0.20, G:0.17, T:0.32
Consensus pattern (44 bp):
CCACTGCAACTTCAGGGAGATAAGATTAGTAGCTTCAATCTGCT
Found at i:67566606 original size:12 final size:12
Alignment explanation
Indices: 67566589--67566625 Score: 56
Period size: 12 Copynumber: 3.1 Consensus size: 12
67566579 TAATTATTTT
67566589 TCACTTATTTAC
1 TCACTTATTTAC
*
67566601 TCACTTATTTAT
1 TCACTTATTTAC
*
67566613 TCACTTATATAC
1 TCACTTATTTAC
67566625 T
1 T
67566626 TCAATTTTTT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.27, C:0.22, G:0.00, T:0.51
Consensus pattern (12 bp):
TCACTTATTTAC
Done.