Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100714657
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 3970000 characters in sequence are not A, C, G, or T
File 214 of 318
Found at i:67570589 original size:19 final size:20
Alignment explanation
Indices: 67570567--67570611 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 20
67570557 TTATGAAACT
*
67570567 TAATGCATATG-ATGAAATG
1 TAATGCAGATGAATGAAATG
*
67570586 TAATGGAGATGAATGAAATG
1 TAATGCAGATGAATGAAATG
67570606 -AATGCA
1 TAATGCA
67570612 AAAAAAAAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
19 14 0.64
20 8 0.36
ACGTcount: A:0.44, C:0.04, G:0.24, T:0.27
Consensus pattern (20 bp):
TAATGCAGATGAATGAAATG
Found at i:67571004 original size:21 final size:22
Alignment explanation
Indices: 67570975--67571015 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
67570965 TGTAGTGCGG
*
67570975 TTTCGAGCTCTTCTATCTTTCC
1 TTTCGAGCTCTTCAATCTTTCC
67570997 TTTC-AGCTCTTCAATCTTT
1 TTTCGAGCTCTTCAATCTTT
67571016 TTTGGGCTTG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 14 0.78
22 4 0.22
ACGTcount: A:0.12, C:0.29, G:0.07, T:0.51
Consensus pattern (22 bp):
TTTCGAGCTCTTCAATCTTTCC
Found at i:67574282 original size:3 final size:3
Alignment explanation
Indices: 67574274--67574329 Score: 51
Period size: 3 Copynumber: 18.7 Consensus size: 3
67574264 AAAGATAAAA
* * * * *
67574274 AAT AAT AAT TAC AAC AAT AAT AAT AAT GAT AAC AA- AAT AAT AAAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT -AAT
67574319 AAT AAT AAT AA
1 AAT AAT AAT AA
67574330 AATCTAAATT
Statistics
Matches: 44, Mismatches: 7, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
2 2 0.05
3 39 0.89
4 3 0.07
ACGTcount: A:0.66, C:0.05, G:0.02, T:0.27
Consensus pattern (3 bp):
AAT
Found at i:67574295 original size:18 final size:17
Alignment explanation
Indices: 67574272--67574316 Score: 63
Period size: 18 Copynumber: 2.6 Consensus size: 17
67574262 AAAAAGATAA
*
67574272 AAAATAATAATTACAAC
1 AAAATAATAATGACAAC
*
67574289 AATAATAATAATGATAAC
1 AA-AATAATAATGACAAC
67574307 AAAATAATAA
1 AAAATAATAA
67574317 ATAATAATAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
17 10 0.40
18 15 0.60
ACGTcount: A:0.67, C:0.07, G:0.02, T:0.24
Consensus pattern (17 bp):
AAAATAATAATGACAAC
Found at i:67574300 original size:21 final size:21
Alignment explanation
Indices: 67574259--67574332 Score: 80
Period size: 21 Copynumber: 3.5 Consensus size: 21
67574249 AATAAGCGTA
*
67574259 AATAA-AAAGATAAAAAATAAT
1 AATAACAAA-ATAATAAATAAT
*
67574280 AATTACAACAATAAT-AATAAT
1 AATAACAA-AATAATAAATAAT
*
67574301 GATAACAAAATAATAAATAAT
1 AATAACAAAATAATAAATAAT
*
67574322 AATAATAAAAT
1 AATAACAAAAT
67574333 CTAAATTTTG
Statistics
Matches: 44, Mismatches: 6, Indels: 6
0.79 0.11 0.11
Matches are distributed among these distances:
20 6 0.14
21 31 0.70
22 6 0.14
23 1 0.02
ACGTcount: A:0.69, C:0.04, G:0.03, T:0.24
Consensus pattern (21 bp):
AATAACAAAATAATAAATAAT
Found at i:67574323 original size:18 final size:17
Alignment explanation
Indices: 67574268--67574323 Score: 60
Period size: 18 Copynumber: 3.2 Consensus size: 17
67574258 AAATAAAAAG
*
67574268 ATAA-AAAATAATAATT
1 ATAACAAAATAATAATA
* *
67574284 ACAACAATAATAATAATG
1 ATAACAA-AATAATAATA
67574302 ATAACAAAATAATAAATA
1 ATAACAAAATAAT-AATA
67574320 ATAA
1 ATAA
67574324 TAATAAAATC
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
16 3 0.09
17 8 0.24
18 22 0.67
ACGTcount: A:0.68, C:0.05, G:0.02, T:0.25
Consensus pattern (17 bp):
ATAACAAAATAATAATA
Found at i:67575800 original size:35 final size:35
Alignment explanation
Indices: 67575761--67575831 Score: 142
Period size: 35 Copynumber: 2.0 Consensus size: 35
67575751 CCAAGAGTAA
67575761 GTGATTGGTATTATGGACATTGAGATCGACATTAC
1 GTGATTGGTATTATGGACATTGAGATCGACATTAC
67575796 GTGATTGGTATTATGGACATTGAGATCGACATTAC
1 GTGATTGGTATTATGGACATTGAGATCGACATTAC
67575831 G
1 G
67575832 AGCAAGCTTG
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.28, C:0.11, G:0.27, T:0.34
Consensus pattern (35 bp):
GTGATTGGTATTATGGACATTGAGATCGACATTAC
Found at i:67577757 original size:43 final size:47
Alignment explanation
Indices: 67577710--67577833 Score: 125
Period size: 48 Copynumber: 2.7 Consensus size: 47
67577700 ATTTCGTATT
*
67577710 AGACCAAAG-CTGGG-C-T-ATTGGCATCGATCTACAATCCCAAGTA
1 AGACCAAAGACTGGGACATGATTGGCAACGATCTACAATCCCAAGTA
* *
67577753 AGACC-ATGACTGGGACATGGCATTGGCAACGATCTACAATCCCACGTA
1 AGACCAAAGACTGGGACAT-G-ATTGGCAACGATCTACAATCCCAAGTA
* *
67577801 AGACC-ATGACTGGGACATGGCATTGGCATCGAT
1 AGACCAAAGACTGGGACAT-G-ATTGGCAACGAT
67577834 ATGTGATCCC
Statistics
Matches: 71, Mismatches: 4, Indels: 7
0.87 0.05 0.09
Matches are distributed among these distances:
42 2 0.03
43 10 0.14
44 1 0.01
45 1 0.01
48 57 0.80
ACGTcount: A:0.31, C:0.25, G:0.24, T:0.20
Consensus pattern (47 bp):
AGACCAAAGACTGGGACATGATTGGCAACGATCTACAATCCCAAGTA
Found at i:67577786 original size:48 final size:48
Alignment explanation
Indices: 67577726--67577878 Score: 200
Period size: 48 Copynumber: 3.2 Consensus size: 48
67577716 AAGCTGGGCT
67577726 ATTGGCATCGATCTACAATCCCAAGTAAGACCATGACTGGGACATGGC
1 ATTGGCATCGATCTACAATCCCAAGTAAGACCATGACTGGGACATGGC
* *
67577774 ATTGGCAACGATCTACAATCCCACGTAAGACCATGACTGGGACATGGC
1 ATTGGCATCGATCTACAATCCCAAGTAAGACCATGACTGGGACATGGC
* *** * ** *
67577822 ATTGGCATCGATATGTGATCCCATGTAAGACCAT-ATCCAGGATATGGC
1 ATTGGCATCGATCTACAATCCCAAGTAAGACCATGA-CTGGGACATGGC
67577870 ATTGGCATC
1 ATTGGCATC
67577879 CTACCATGTG
Statistics
Matches: 93, Mismatches: 11, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
47 1 0.01
48 92 0.99
ACGTcount: A:0.30, C:0.24, G:0.23, T:0.23
Consensus pattern (48 bp):
ATTGGCATCGATCTACAATCCCAAGTAAGACCATGACTGGGACATGGC
Found at i:67579667 original size:15 final size:16
Alignment explanation
Indices: 67579647--67579676 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
67579637 TGCATATGTA
67579647 TGAATG-AATTTGATT
1 TGAATGAAATTTGATT
67579662 TGAATGAAATTTGAT
1 TGAATGAAATTTGAT
67579677 GGCCAGGTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.37, C:0.00, G:0.20, T:0.43
Consensus pattern (16 bp):
TGAATGAAATTTGATT
Found at i:67582420 original size:13 final size:13
Alignment explanation
Indices: 67582398--67582430 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
67582388 AAGGGTTTGT
67582398 TTAT-TAAACTAA
1 TTATCTAAACTAA
67582410 TTATCTAAACTAA
1 TTATCTAAACTAA
*
67582423 TTAACTAA
1 TTATCTAA
67582431 TTTAATTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.39
Consensus pattern (13 bp):
TTATCTAAACTAA
Found at i:67584486 original size:40 final size:40
Alignment explanation
Indices: 67584400--67584486 Score: 104
Period size: 40 Copynumber: 2.2 Consensus size: 40
67584390 GTTACATGTA
* * * *
67584400 TGGTGTGTTTTAGTTGGATTAGCTCTTATGAGCTTCTGTC
1 TGGTGTGTTTGAGTTGGACTAACTCTTATGAGATTCTGTC
* *
67584440 TAGTGTGTTTCGA-TTGGACTAACTCTTATGAGATTCTGTT
1 TGGTGTGTTT-GAGTTGGACTAACTCTTATGAGATTCTGTC
67584480 TGGTGTG
1 TGGTGTG
67584487 CCCGATTGAT
Statistics
Matches: 39, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
40 38 0.97
41 1 0.03
ACGTcount: A:0.15, C:0.11, G:0.28, T:0.46
Consensus pattern (40 bp):
TGGTGTGTTTGAGTTGGACTAACTCTTATGAGATTCTGTC
Found at i:67597297 original size:24 final size:24
Alignment explanation
Indices: 67597213--67597299 Score: 68
Period size: 25 Copynumber: 3.5 Consensus size: 24
67597203 TTCGGGAATC
* * *
67597213 CTCATACGAGCACATAAACAGAAAG
1 CTCATACGAGC-CATTAACGGGAAG
* **
67597238 CTCTTGTGAGCCATATAACGGGAAG
1 CTCATACGAGCCAT-TAACGGGAAG
**
67597263 CTCCGGA-GAGCCATTAACGGGAAG
1 CT-CATACGAGCCATTAACGGGAAG
67597287 CTCATACGAGCCA
1 CTCATACGAGCCA
67597300 ATTTCGGGAA
Statistics
Matches: 48, Mismatches: 11, Indels: 7
0.73 0.17 0.11
Matches are distributed among these distances:
23 2 0.04
24 21 0.44
25 24 0.50
26 1 0.02
ACGTcount: A:0.34, C:0.25, G:0.24, T:0.16
Consensus pattern (24 bp):
CTCATACGAGCCATTAACGGGAAG
Found at i:67597307 original size:24 final size:24
Alignment explanation
Indices: 67597245--67597336 Score: 71
Period size: 24 Copynumber: 3.8 Consensus size: 24
67597235 AAGCTCTTGT
* ** *
67597245 GAGCCATATAACGGGAAGCTCCGGA
1 GAGCCA-ATATCGGGAAGCTCAAGC
* *
67597270 GAGCCATTAACGGGAAGCTCATA-C
1 GAGCCAATATCGGGAAGCTCA-AGC
* * *
67597294 GAGCCAATTTCGGGAAGTTCAAGT
1 GAGCCAATATCGGGAAGCTCAAGC
67597318 GAGCCAATATC-GGAAGCTC
1 GAGCCAATATCGGGAAGCTC
67597337 TGGAGAGCCA
Statistics
Matches: 54, Mismatches: 11, Indels: 6
0.76 0.15 0.08
Matches are distributed among these distances:
23 8 0.15
24 40 0.74
25 6 0.11
ACGTcount: A:0.32, C:0.23, G:0.28, T:0.17
Consensus pattern (24 bp):
GAGCCAATATCGGGAAGCTCAAGC
Found at i:67616861 original size:24 final size:24
Alignment explanation
Indices: 67616777--67616863 Score: 68
Period size: 25 Copynumber: 3.5 Consensus size: 24
67616767 TTCGGGAATC
* * *
67616777 CTCATACGAGCACATAAACAGAAAG
1 CTCATACGAGC-CATTAACGGGAAG
* **
67616802 CTCTTGTGAGCCATATAACGGGAAG
1 CTCATACGAGCCAT-TAACGGGAAG
**
67616827 CTCCGGA-GAGCCATTAACGGGAAG
1 CT-CATACGAGCCATTAACGGGAAG
67616851 CTCATACGAGCCA
1 CTCATACGAGCCA
67616864 ATTTCGGGAA
Statistics
Matches: 48, Mismatches: 11, Indels: 7
0.73 0.17 0.11
Matches are distributed among these distances:
23 2 0.04
24 21 0.44
25 24 0.50
26 1 0.02
ACGTcount: A:0.34, C:0.25, G:0.24, T:0.16
Consensus pattern (24 bp):
CTCATACGAGCCATTAACGGGAAG
Found at i:67616909 original size:24 final size:24
Alignment explanation
Indices: 67616799--67616913 Score: 90
Period size: 24 Copynumber: 4.8 Consensus size: 24
67616789 CATAAACAGA
* *
67616799 AAGCTCTTGTGAGCCATATAACGGG
1 AAGCTCTGGAGAGCCA-ATAACGGG
* *
67616824 AAGCTCCGGAGAGCCATTAACGGG
1 AAGCTCTGGAGAGCCAATAACGGG
**
67616848 AAGCTCAT--ACGAGCCAATTTCGGG
1 AAGCTC-TGGA-GAGCCAATAACGGG
* ** * *
67616872 AAGTTCAAGTGAGCCAATATCGGG
1 AAGCTCTGGAGAGCCAATAACGGG
67616896 AAGCTCTGGAGAGCCAAT
1 AAGCTCTGGAGAGCCAAT
67616914 TAATAGGGAA
Statistics
Matches: 70, Mismatches: 16, Indels: 9
0.74 0.17 0.09
Matches are distributed among these distances:
23 1 0.01
24 56 0.80
25 13 0.19
ACGTcount: A:0.30, C:0.22, G:0.29, T:0.19
Consensus pattern (24 bp):
AAGCTCTGGAGAGCCAATAACGGG
Found at i:67620583 original size:46 final size:49
Alignment explanation
Indices: 67620434--67620754 Score: 253
Period size: 46 Copynumber: 6.8 Consensus size: 49
67620424 TCATTTGTGT
* * * *
67620434 GAGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCAC-A-TTAGGA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGAT-GTA
* * * * * *
67620480 GAGTCAATGTAAGACCATGTTTGGGACATGGCATCGGCATTGAGACG-A
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGATGTA
* * * * *
67620528 GTGCTAGTGTAAGA-CATGTCTAGGACAT-GCATCGGCCTCGGGACGTA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGATGTA
* * *
67620575 -AGCCAGTGTAAGA-CATGTTTGGGACAT-GCATCAG-CTACAAGATGT-
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCT-CGAGATGTA
* * *
67620620 --GTCAGTGTAAGACCATGTCTGGGACATGGTATCGG-CACG-GTTATGTGA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAG--ATGT-A
* *
67620668 GAGCTAGTGTAAGACCATGTCTAGGACATGGCATCGGCCTCGAAGATG-A
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCG-AGATGTA
*
67620717 TAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC
67620755 ACCTTACCCA
Statistics
Matches: 218, Mismatches: 40, Indels: 31
0.75 0.14 0.11
Matches are distributed among these distances:
44 12 0.06
45 16 0.07
46 69 0.32
47 26 0.12
48 19 0.09
49 38 0.17
50 31 0.14
51 6 0.03
53 1 0.00
ACGTcount: A:0.27, C:0.19, G:0.31, T:0.23
Consensus pattern (49 bp):
GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGATGTA
Found at i:67620679 original size:94 final size:93
Alignment explanation
Indices: 67620439--67620754 Score: 294
Period size: 94 Copynumber: 3.3 Consensus size: 93
67620429 TGTGTGAGCT
* *
67620439 AGTGTAAGACATGTCTGGGACATGCATCGGCCAC-ATTAG-GAGAG-TCAATGTAAGACCATGTT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCACGGTTAGTGAGAGCT-AGTGTAAGACCATGTT
* *
67620501 TGGGACATGGCATCGGCATTGAGACGA-GTGC
65 TGGGACATGGCATCGGC--T-ACAAGATGTGC
* * * *
67620532 TAGTGTAAGACATGTCTAGGACATGCATCGGCCTCGG-GACGT-A-AGCCAGTGTAAGA-CATGT
1 -AGTGTAAGACATGTCTGGGACATGCATCGGCCACGGTTA-GTGAGAGCTAGTGTAAGACCATGT
*
67620593 TTGGGACAT-GCATCAGCTACAAGATGTGTC
64 TTGGGACATGGCATCGGCTACAAGATGTG-C
*
67620623 AGTGTAAGACCATGTCTGGGACATGGTATCGG-CACGGTTATGTGAGAGCTAGTGTAAGACCATG
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCACGGTTA-GTGAGAGCTAGTGTAAGACCATG
* *
67620687 TCTAGGACATGGCATCGGCCT-CGAAGATGATAGCC
63 TTTGGGACATGGCATCGG-CTAC-AAGATG-T-G-C
67620722 AGTGTAAGACCATGTCTGGGACATGGCATCGGC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGC
67620755 ACCTTACCCA
Statistics
Matches: 184, Mismatches: 20, Indels: 30
0.79 0.09 0.13
Matches are distributed among these distances:
89 4 0.02
90 13 0.07
91 18 0.10
92 16 0.09
93 15 0.08
94 55 0.30
95 14 0.08
96 7 0.04
97 8 0.04
98 1 0.01
99 33 0.18
ACGTcount: A:0.27, C:0.19, G:0.31, T:0.23
Consensus pattern (93 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCACGGTTAGTGAGAGCTAGTGTAAGACCATGTTT
GGGACATGGCATCGGCTACAAGATGTGC
Found at i:67627076 original size:15 final size:15
Alignment explanation
Indices: 67627058--67627087 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
67627048 AAATTTTAAT
*
67627058 TTTTTATAGTTTATA
1 TTTTTATAATTTATA
67627073 TTTTTATAATTTATA
1 TTTTTATAATTTATA
67627088 AATGATTAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.30, C:0.00, G:0.03, T:0.67
Consensus pattern (15 bp):
TTTTTATAATTTATA
Found at i:67627882 original size:23 final size:22
Alignment explanation
Indices: 67627850--67627892 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 22
67627840 TGTTCTTGCC
67627850 AAAATGTCA-TCTAGATGGCAAA
1 AAAATGTCATTCTA-ATGGCAAA
67627872 AAAATAGTCATTCTAATGGCA
1 AAAAT-GTCATTCTAATGGCA
67627893 TCAAGGTTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
22 5 0.26
23 10 0.53
24 4 0.21
ACGTcount: A:0.44, C:0.14, G:0.16, T:0.26
Consensus pattern (22 bp):
AAAATGTCATTCTAATGGCAAA
Found at i:67629077 original size:24 final size:25
Alignment explanation
Indices: 67629031--67629078 Score: 64
Period size: 24 Copynumber: 2.0 Consensus size: 25
67629021 AGTTCTCTTG
*
67629031 TATTAATGTTTATTTTATCAATTCA
1 TATTAATGTTTATTATATCAATTCA
67629056 TATTAAT-TTTA-TATATCTAATTC
1 TATTAATGTTTATTATATC-AATTC
67629079 CTTCACATAT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
23 5 0.24
24 9 0.43
25 7 0.33
ACGTcount: A:0.33, C:0.08, G:0.02, T:0.56
Consensus pattern (25 bp):
TATTAATGTTTATTATATCAATTCA
Found at i:67641221 original size:47 final size:47
Alignment explanation
Indices: 67641164--67641574 Score: 633
Period size: 47 Copynumber: 8.6 Consensus size: 47
67641154 TATTTGAATA
*
67641164 AATGTGAAAGTGTATATATGTGGTAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
67641211 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
67641260 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
67641307 AATGTGAAAGTGTATATATATGTGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATA--TGTGATAAGGCCTAATGGCCGATGTGATG
*
67641358 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
67641405 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
67641454 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * * * *
67641501 AATGCGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
67641548 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
67641575 TCCCGAAGGG
Statistics
Matches: 337, Mismatches: 19, Indels: 16
0.91 0.05 0.04
Matches are distributed among these distances:
47 194 0.58
49 104 0.31
51 39 0.12
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:67641328 original size:96 final size:96
Alignment explanation
Indices: 67641164--67641574 Score: 673
Period size: 96 Copynumber: 4.3 Consensus size: 96
67641154 TATTTGAATA
*
67641164 AATGTGAAAGTGTATATATGTGGTAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
67641229 TATGTGATAAGGCCTAATGGCCGATGTGATG
66 TATGTGATAAGGCCTAATGGCCGATGTGATG
* *
67641260 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
67641325 TATGTGTGATAAGGCCTAATGGCCGATGTGATG
66 TA--TGTGATAAGGCCTAATGGCCGATGTGATG
*
67641358 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
67641423 TATGTGATAAGGCCTAATGGCCGATGTGATG
66 TATGTGATAAGGCCTAATGGCCGATGTGATG
*
67641454 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGCGAAAGTG--TATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
* * * * * *
67641517 TATGTGACAGGGCCGAGTGGCCAACGTGATG
66 TATGTGATAAGGCCTAATGGCCGATGTGATG
* *
67641548 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
67641575 TCCCGAAGGG
Statistics
Matches: 297, Mismatches: 16, Indels: 6
0.93 0.05 0.02
Matches are distributed among these distances:
94 54 0.18
96 150 0.51
98 93 0.31
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.29
Consensus pattern (96 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
TATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:67641499 original size:194 final size:190
Alignment explanation
Indices: 67641164--67641574 Score: 669
Period size: 194 Copynumber: 2.1 Consensus size: 190
67641154 TATTTGAATA
* *
67641164 AATGTGAAAGTGTATATATGTGGTAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATA
67641229 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAAT
66 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAAT
* * * * *
67641294 GGCCAATGTGATGAATGTGAAAGTGTATATATATGTGTGATAAGGCCTAATGGCCGATGTGATG
131 GGCCAATGTGATGAATGCGAAAGTG--TATATA--TGTGACAAGGCCGAATGGCCAACGTGATG
67641358 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATA
*
67641423 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
66 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAAT
* * *
67641488 GGCCGATGTGATGAATGCGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATG
131 GGCCAATGTGATGAATGCGAAAGTGTATATATGTGACAAGGCCGAATGGCCAACGTGATG
* *
67641548 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
67641575 TCCCGAAGGG
Statistics
Matches: 204, Mismatches: 13, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
190 48 0.24
192 6 0.03
194 150 0.74
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.29
Consensus pattern (190 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATA
TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAAT
GGCCAATGTGATGAATGCGAAAGTGTATATATGTGACAAGGCCGAATGGCCAACGTGATG
Found at i:67641743 original size:37 final size:37
Alignment explanation
Indices: 67641693--67641828 Score: 227
Period size: 37 Copynumber: 3.7 Consensus size: 37
67641683 CCGAGCTCTA
67641693 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
*
67641730 AAGACCCGATGACTACGTTTGGAGATTATGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
*
67641767 AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
* * *
67641804 AAGACCCGATAACTTCATGTGGAGA
1 AAGACCCGATGACTACGTGTGGAGA
67641829 CTTCGTCTGA
Statistics
Matches: 93, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 93 1.00
ACGTcount: A:0.26, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
Found at i:67643357 original size:40 final size:40
Alignment explanation
Indices: 67643108--67643410 Score: 437
Period size: 40 Copynumber: 7.6 Consensus size: 40
67643098 GAGTGAAATG
*
67643108 TCCGGGCTAAATCCCGAAGAGCATTCGTGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
* * *
67643148 TCCGGACTAAGTTCCGAAGAGCATTTGTGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
* *
67643188 TCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
67643228 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
* *
67643268 TCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
*
67643308 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
* ** * * *
67643348 TCCGTGCTAAACCCCGAAGAGCAGTT-GTGCTGGTGTTATA
1 TCCGGGCTAAGTCCCGAAGAGCA-TTCGTGCTAGTGATGTA
* *
67643388 TCCGGGCTAGGTCCCAAAGAGCA
1 TCCGGGCTAAGTCCCGAAGAGCA
67643411 ATCATGCTGG
Statistics
Matches: 240, Mismatches: 22, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
40 238 0.99
41 2 0.01
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
Found at i:67647495 original size:47 final size:47
Alignment explanation
Indices: 67647441--67648184 Score: 1209
Period size: 47 Copynumber: 15.6 Consensus size: 47
67647431 TATTTGAATA
67647441 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
67647488 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
67647535 AATGTGAAAGTGTATATATGTGATAATGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
67647582 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
67647631 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
67647678 AATGTGAAAGTGTATATATATGTGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATA--TGTGATAAGGCCTAATGGCCGATGTGATG
* *
67647729 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGACG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
67647776 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
67647823 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
67647870 AATGTGAAAGTGTATATATATGTGTGATAAGGCCTAATGGTCGATGTGATG
1 AATGTGAAAGTG--TATATA--TGTGATAAGGCCTAATGGCCGATGTGATG
*
67647921 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
67647968 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
67648015 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
67648064 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * * *
67648111 AATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
67648158 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
67648185 TCCCGAAGGG
Statistics
Matches: 653, Mismatches: 32, Indels: 24
0.92 0.05 0.03
Matches are distributed among these distances:
47 460 0.70
49 116 0.18
51 77 0.12
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:67647832 original size:192 final size:188
Alignment explanation
Indices: 67647441--67648184 Score: 1209
Period size: 192 Copynumber: 3.9 Consensus size: 188
67647431 TATTTGAATA
* *
67647441 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
* * *
67647506 TGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAATGCCTAATGG
66 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAG
67647571 CCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
131 CCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
67647631 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG--TATA
67647696 TATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTA
64 TA--TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTA
*
67647761 ATAGCCGATGTGACGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
127 ATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
67647823 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG--TATA
*
67647888 TATGTGTGATAAGGCCTAATGGTCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTA
64 TA--TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTA
*
67647953 ATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
127 ATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
67648015 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
* * * *
67648080 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGT
64 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
* * * * *
67648145 GGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
129 AGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
67648185 TCCCGAAGGG
Statistics
Matches: 527, Mismatches: 21, Indels: 12
0.94 0.04 0.02
Matches are distributed among these distances:
190 150 0.28
192 248 0.47
194 129 0.24
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (188 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAG
CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:67647986 original size:288 final size:285
Alignment explanation
Indices: 67647441--67648184 Score: 1260
Period size: 288 Copynumber: 2.6 Consensus size: 285
67647431 TATTTGAATA
67647441 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
* * *
67647506 TGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAATGCCTAATGG
66 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGG
*
67647571 CCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
131 CCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
*
67647636 GAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGT
196 GAAAGTGTATATATGTGATAAGGCCGAATAGCCAATGTGATGAATGTGAAAGTG-ATATATA--T
*
67647701 GTGATAAGGCCTAATGGCCGATGTGATG
258 GTGATAAGGCCTAATGGCCAATGTGATG
* *
67647729 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGACGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
67647794 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGG
66 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGG
*
67647859 CCAATGTGATGAATGTGAAAGTGTATATATATGTGTGATAAGGCCTAATGGTCGATGTGATGAAT
131 CCAATGTGATGAATGTGAAAGTGTATATATA--TGTGATAAGGCCTAATGGCCGATGTGATGAAT
* *
67647924 GTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG-TATATATG
194 GTGAAAGTGTATATATGTGATAAGGCCGAATAGCCAATGTGATGAATGTGAAAGTGATATATATG
67647988 TGATAAGGCCTAATGGCCAATGTGATG
259 TGATAAGGCCTAATGGCCAATGTGATG
67648015 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
* * *
67648080 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGT
64 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAAT
* *
67648145 GGCCAACGTGATGGATGTGAAAGTGTATA-A-ATGTGATAAG
129 GGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAG
67648185 TCCCGAAGGG
Statistics
Matches: 434, Mismatches: 18, Indels: 12
0.94 0.04 0.03
Matches are distributed among these distances:
284 9 0.02
286 41 0.09
287 1 0.00
288 299 0.69
290 84 0.19
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (285 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGG
CCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
GAAAGTGTATATATGTGATAAGGCCGAATAGCCAATGTGATGAATGTGAAAGTGATATATATGTG
ATAAGGCCTAATGGCCAATGTGATG
Found at i:67648353 original size:37 final size:37
Alignment explanation
Indices: 67648303--67648438 Score: 236
Period size: 37 Copynumber: 3.7 Consensus size: 37
67648293 CCGAGCTCTA
67648303 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
67648340 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
*
67648377 AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
* * *
67648414 AAGACCCGATAACTTCATGTGGAGA
1 AAGACCCGATGACTACGTGTGGAGA
67648439 CTTCGTCTGA
Statistics
Matches: 95, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 95 1.00
ACGTcount: A:0.26, C:0.19, G:0.31, T:0.24
Consensus pattern (37 bp):
AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
Found at i:67654925 original size:39 final size:40
Alignment explanation
Indices: 67654880--67655049 Score: 200
Period size: 40 Copynumber: 4.3 Consensus size: 40
67654870 GCTCCTCGTT
* * *
67654880 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
**
67654920 C-AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * *
67654959 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * * *
67654999 CAAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGG-ATTTAGTAACTCGCA
*
67655039 CAAAAGCCTTC
1 CAAATGCCTTC
67655050 AGATCTTAGT
Statistics
Matches: 115, Mismatches: 13, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
39 34 0.30
40 77 0.67
41 4 0.03
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
Found at i:67662259 original size:39 final size:40
Alignment explanation
Indices: 67662214--67662385 Score: 204
Period size: 40 Copynumber: 4.3 Consensus size: 40
67662204 GCTCCTCGTT
* * *
67662214 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
**
67662254 C-AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * *
67662293 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * * *
67662333 CAAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGG-ATTTAGTAACTCGCA
*
67662373 CAAAAGCCTTCGG
1 CAAATGCCTTCGG
67662386 ATCTTAGTCC
Statistics
Matches: 117, Mismatches: 13, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
39 34 0.29
40 79 0.68
41 4 0.03
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
Found at i:67662398 original size:80 final size:79
Alignment explanation
Indices: 67662214--67662438 Score: 204
Period size: 80 Copynumber: 2.8 Consensus size: 79
67662204 GCTCCTCGTT
* * * * * * *
67662214 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGG-
1 CAAAAGCCTTCGGGACTTAACCCGGATTTAGT-ACTCGCACAAAGCCTTCGGGACTTAACCCGGA
67662278 ATTTAACAACTCGCA
65 ATTTAACAACTCGCA
* * *
67662293 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCGGGGCTTAACCCGG
1 CAAAAGCCTTCGGGACTTAACCCGGATTTAGTA-CTCGCACAAA-GCCTTCGGGACTTAACCCGG
** *
67662358 AATTT-GTATCTCGCA
64 AATTTAACAACTCGCA
** * * * *
67662373 CAAAAGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCACAAAGCCTTCGGGACTTAGCCCG
1 CAAAAGCCTTCGGGA-CTTAACCCGGATTTAGT-AC-TCGCACAAAGCCTTCGGGACTTAACCCG
67662437 GA
63 GA
67662439 CAGCATTCAA
Statistics
Matches: 120, Mismatches: 20, Indels: 11
0.79 0.13 0.07
Matches are distributed among these distances:
78 1 0.01
79 39 0.32
80 67 0.56
81 13 0.11
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.24
Consensus pattern (79 bp):
CAAAAGCCTTCGGGACTTAACCCGGATTTAGTACTCGCACAAAGCCTTCGGGACTTAACCCGGAA
TTTAACAACTCGCA
Found at i:67662447 original size:41 final size:41
Alignment explanation
Indices: 67662370--67662447 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
67662360 TTTGTATCTC
* * *
67662370 GCACAAAAGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAAAGCCTTCGGATCTTAGCCCGGACACATTCACTTA
67662411 GCAC-AAAGCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAAAGCCTTC-GGATCTTAGCCCGGACA-CATTCA
67662448 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 20 0.62
41 12 0.38
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (41 bp):
GCACAAAAGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:67666288 original size:13 final size:13
Alignment explanation
Indices: 67666270--67666304 Score: 61
Period size: 13 Copynumber: 2.7 Consensus size: 13
67666260 ATTATATGAA
*
67666270 TAATTATTTTATT
1 TAATTATGTTATT
67666283 TAATTATGTTATT
1 TAATTATGTTATT
67666296 TAATTATGT
1 TAATTATGT
67666305 AGGTTAGCCG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.31, C:0.00, G:0.06, T:0.63
Consensus pattern (13 bp):
TAATTATGTTATT
Found at i:67671267 original size:22 final size:22
Alignment explanation
Indices: 67671242--67671284 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
67671232 TTTTAAATTA
*
67671242 AAAAATTATAAAAATTATTTTT
1 AAAAATTATAAAAAGTATTTTT
67671264 AAAAATTATAAAAAGTATTTT
1 AAAAATTATAAAAAGTATTTT
67671285 AATATTTAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (22 bp):
AAAAATTATAAAAAGTATTTTT
Found at i:67674081 original size:115 final size:115
Alignment explanation
Indices: 67673873--67674089 Score: 337
Period size: 115 Copynumber: 1.9 Consensus size: 115
67673863 TACAACATCC
67673873 AAATAATACCAATGTAGTAGCAAAACAATAGTAAACAGCAACAAAAAAAATTATGCAGTTTAAGT
1 AAATAATACCAATGTAGTAGCAAAACAATAGTAAACAGCAACAAAAAAAATTATGCAGTTTAAGT
* ** *
67673938 CGGGCTTGGGCCAAGCCTGAGCCAAAAAATCCTTATCCGAGATACCAACA
66 CGGACCCGGGCCAAACCTGAGCCAAAAAATCCTTATCCGAGATACCAACA
* *
67673988 AAATAATAGCAATGTAGTAGCAAAACAATAGTAAATAGCAACAAAAAAAAAATTATGCAGTTTAA
1 AAATAATACCAATGTAGTAGCAAAACAATAGTAAACAGCAAC--AAAAAAAATTATGCAGTTTAA
* *
67674053 GTC-GACCCGGGCCAAACCTGGGCCAAAAAATTCTTAT
64 GTCGGACCCGGGCCAAACCTGAGCCAAAAAATCCTTAT
67674090 GTGAGTCTTG
Statistics
Matches: 92, Mismatches: 8, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
115 40 0.43
116 28 0.30
117 24 0.26
ACGTcount: A:0.46, C:0.18, G:0.16, T:0.20
Consensus pattern (115 bp):
AAATAATACCAATGTAGTAGCAAAACAATAGTAAACAGCAACAAAAAAAATTATGCAGTTTAAGT
CGGACCCGGGCCAAACCTGAGCCAAAAAATCCTTATCCGAGATACCAACA
Found at i:67681950 original size:35 final size:35
Alignment explanation
Indices: 67681911--67681981 Score: 106
Period size: 35 Copynumber: 2.0 Consensus size: 35
67681901 TCTAGGATCA
* *
67681911 CATATCTTTGAAGATCCCCTTCCATATTTGCCAAG
1 CATATCTTTGAAGATCACCTTCCATATCTGCCAAG
* *
67681946 CATATCTTTGAAGATCACTTTCCATATCTGTCAAG
1 CATATCTTTGAAGATCACCTTCCATATCTGCCAAG
67681981 C
1 C
67681982 TCTAGAGATG
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
35 32 1.00
ACGTcount: A:0.27, C:0.27, G:0.11, T:0.35
Consensus pattern (35 bp):
CATATCTTTGAAGATCACCTTCCATATCTGCCAAG
Found at i:67687022 original size:23 final size:24
Alignment explanation
Indices: 67686983--67687029 Score: 62
Period size: 22 Copynumber: 2.0 Consensus size: 24
67686973 TAAAGCTATC
67686983 TAGATATCAAATCTCT-AAGATTA
1 TAGATATCAAATCTCTAAAGATTA
*
67687006 TAGA-ATCATATCTTCTAAAGATTA
1 TAGATATCAAATC-TCTAAAGATTA
67687030 CATTTAATAT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 7 0.33
23 7 0.33
24 7 0.33
ACGTcount: A:0.43, C:0.13, G:0.09, T:0.36
Consensus pattern (24 bp):
TAGATATCAAATCTCTAAAGATTA
Found at i:67695374 original size:55 final size:54
Alignment explanation
Indices: 67695232--67695440 Score: 232
Period size: 55 Copynumber: 3.9 Consensus size: 54
67695222 TCCTTTTTAA
*
67695232 AACTTACCATTGCCATGTCTTGACATGGTCTTACATG-GTATCCTTGCCTTATG
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGAGTATCCTTGCCTTATG
* * * *
67695285 AAGTCACCAATGCCATGCCTTGGCATGGTCTTACATGAG-A-CCTTTGCCTTATAG
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGAGTATCC-TTGCCTTAT-G
* *
67695339 TAACTTATCAATGCCATGTCTTGACATGGTCTTACATGA-TTTCCTTGCCTTA-G
1 -AACTTACCAATGCCATGTCTTGACATGGTCTTACATGAGTATCCTTGCCTTATG
* * *
67695392 AAACCTTACCAATTTCCATGCCTTGGCATGGTCTTACATG-GTATCCTTG
1 -AA-CTTACCAA-TGCCATGTCTTGACATGGTCTTACATGAGTATCCTTG
67695441 AACCCTAATG
Statistics
Matches: 130, Mismatches: 17, Indels: 16
0.80 0.10 0.10
Matches are distributed among these distances:
52 2 0.02
53 45 0.35
54 9 0.07
55 72 0.55
56 2 0.02
ACGTcount: A:0.22, C:0.25, G:0.17, T:0.35
Consensus pattern (54 bp):
AACTTACCAATGCCATGTCTTGACATGGTCTTACATGAGTATCCTTGCCTTATG
Found at i:67695384 original size:108 final size:110
Alignment explanation
Indices: 67695232--67695431 Score: 307
Period size: 108 Copynumber: 1.8 Consensus size: 110
67695222 TCCTTTTTAA
* * *
67695232 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATG-AA-GTCACCAA
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTA-GAAACCTCACCAA
67695295 -TGCCATGCCTTGGCATGGTCTTACATGAGACCTTTGCCTTATAGT
65 TTGCCATGCCTTGGCATGGTCTTACATGAGACCTTTGCCTTATAGT
* * *
67695340 AACTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTAGAAACCTTACCAAT
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTAGAAACCTCACCAAT
*
67695405 TTCCATGCCTTGGCATGGTCTTACATG
66 TGCCATGCCTTGGCATGGTCTTACATG
67695432 GTATCCTTGA
Statistics
Matches: 82, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
107 1 0.01
108 49 0.60
109 6 0.07
110 26 0.32
ACGTcount: A:0.23, C:0.25, G:0.17, T:0.35
Consensus pattern (110 bp):
AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTAGAAACCTCACCAAT
TGCCATGCCTTGGCATGGTCTTACATGAGACCTTTGCCTTATAGT
Found at i:67702573 original size:16 final size:16
Alignment explanation
Indices: 67702554--67702584 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
67702544 CTTCTTCACT
67702554 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
67702570 TACTTACTTACTTAA
1 TACTCACTTACTTAA
67702585 TGAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:67702590 original size:20 final size:20
Alignment explanation
Indices: 67702551--67702590 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
67702541 AAACTTCTTC
* *
67702551 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATGAAAT
*
67702571 ACTTACTTACTTAATGAAAT
1 ACTTACTCACTTAATGAAAT
67702591 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.20, G:0.03, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATGAAAT
Found at i:67702982 original size:55 final size:53
Alignment explanation
Indices: 67702797--67703031 Score: 205
Period size: 55 Copynumber: 4.4 Consensus size: 53
67702787 TATGAATTGT
* * * *
67702797 CATGGTCTTACGTGGTATCCTTT--TTA-A-AACTTACCATTGCCATGTCATGA
1 CATGGTCTTACAT-GTATCCTTTCCTTATAGAACTTACCAATGCCATGCCTTGA
* * * *
67702847 CATGGTCTTACATGGTATCCTTGCCTTAT-GAAGTCACCAATGCCATGCCTTGG
1 CATGGTCTTACAT-GTATCCTTTCCTTATAGAACTTACCAATGCCATGCCTTGA
* * *
67702900 CATGGTCTTACATGGGA-CCTTTGCCTTATAGTAACTTATCAATGCCATGTCTTGA
1 CATGGTCTTACAT-GTATCCTTT-CCTTATAG-AACTTACCAATGCCATGCCTTGA
* * * *
67702955 CATGGTCTTACATGATTTCCTTTCCTTAGA-AACCTTACCAATTTCCATGCCTTGG
1 CATGGTCTTACATG-TATCCTTTCCTTATAGAA-CTTACCAA-TGCCATGCCTTGA
67703010 CATGGTCTTACATGGTATCCTT
1 CATGGTCTTACAT-GTATCCTT
67703032 GAACCTTAAT
Statistics
Matches: 150, Mismatches: 23, Indels: 19
0.78 0.12 0.10
Matches are distributed among these distances:
50 21 0.14
52 7 0.05
53 41 0.27
54 9 0.06
55 66 0.44
56 6 0.04
ACGTcount: A:0.22, C:0.24, G:0.17, T:0.37
Consensus pattern (53 bp):
CATGGTCTTACATGTATCCTTTCCTTATAGAACTTACCAATGCCATGCCTTGA
Found at i:67725357 original size:33 final size:33
Alignment explanation
Indices: 67725248--67725358 Score: 109
Period size: 33 Copynumber: 3.4 Consensus size: 33
67725238 AAGTGGTATA
** * *
67725248 ACTTGAAAAGGTTATGTACACTTTGTGTGTA-C
1 ACTTGAAAAGGAAAGGTATACTTTGTGTGTACC
* *** *
67725280 ACTTGGAAAGGTTGGGTATACTTTGTGTATACC
1 ACTTGAAAAGGAAAGGTATACTTTGTGTGTACC
*
67725313 A-TATGATAAGGAAAGGTATACTTTGTGTGTACC
1 ACT-TGAAAAGGAAAGGTATACTTTGTGTGTACC
67725346 ACTTGAAAAGGAA
1 ACTTGAAAAGGAA
67725359 TGTACACCTC
Statistics
Matches: 64, Mismatches: 12, Indels: 5
0.79 0.15 0.06
Matches are distributed among these distances:
32 27 0.42
33 36 0.56
34 1 0.02
ACGTcount: A:0.32, C:0.11, G:0.24, T:0.33
Consensus pattern (33 bp):
ACTTGAAAAGGAAAGGTATACTTTGTGTGTACC
Found at i:67726039 original size:30 final size:30
Alignment explanation
Indices: 67726003--67726072 Score: 131
Period size: 30 Copynumber: 2.3 Consensus size: 30
67725993 CACATAGGTA
67726003 TGACACACGGGCATGTGTCTAGGCCGTGTG
1 TGACACACGGGCATGTGTCTAGGCCGTGTG
*
67726033 TGACACACGAGCATGTGTCTAGGCCGTGTG
1 TGACACACGGGCATGTGTCTAGGCCGTGTG
67726063 TGACACACGG
1 TGACACACGG
67726073 TAAGCCCACA
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
30 38 1.00
ACGTcount: A:0.20, C:0.24, G:0.34, T:0.21
Consensus pattern (30 bp):
TGACACACGGGCATGTGTCTAGGCCGTGTG
Found at i:67737643 original size:26 final size:26
Alignment explanation
Indices: 67737607--67737678 Score: 101
Period size: 26 Copynumber: 2.8 Consensus size: 26
67737597 CAACGATTCG
67737607 TCCCGGTCCCTCCCCTTTTTGAATCA
1 TCCCGGTCCCTCCCCTTTTTGAATCA
* * *
67737633 TCCCAGTCCCTCCCCTTTTAGAATTA
1 TCCCGGTCCCTCCCCTTTTTGAATCA
*
67737659 TCCCGGT-CCTTCCCTTTTTG
1 TCCCGGTCCCTCCCCTTTTTG
67737679 GAACAAAAGC
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
25 11 0.28
26 29 0.73
ACGTcount: A:0.11, C:0.40, G:0.11, T:0.38
Consensus pattern (26 bp):
TCCCGGTCCCTCCCCTTTTTGAATCA
Found at i:67738048 original size:43 final size:42
Alignment explanation
Indices: 67738000--67738122 Score: 124
Period size: 43 Copynumber: 2.9 Consensus size: 42
67737990 CCTCAAACAC
67738000 CATCGGTAACCTTGGTGCCTAGATATGTGGAAGCCTCGAGTAG
1 CATCGGT-ACCTTGGTGCCTAGATATGTGGAAGCCTCGAGTAG
* * *
67738043 TATCGGTACCTTGGTGCCTCG-GATG-GACGAGAGCCTCGAGTAG
1 CATCGGTACCTTGGTGCCTAGATATGTG--GA-AGCCTCGAGTAG
* * * *
67738086 CATCGGCACCTTGGTGCCTTGGATGTGTGGGAGCCTC
1 CATCGGTACCTTGGTGCC-TAGATATGTGGAAGCCTC
67738123 AGACATCATC
Statistics
Matches: 65, Mismatches: 9, Indels: 12
0.76 0.10 0.14
Matches are distributed among these distances:
40 1 0.02
41 3 0.05
42 15 0.23
43 40 0.62
44 3 0.05
45 2 0.03
46 1 0.02
ACGTcount: A:0.18, C:0.24, G:0.33, T:0.25
Consensus pattern (42 bp):
CATCGGTACCTTGGTGCCTAGATATGTGGAAGCCTCGAGTAG
Found at i:67738048 original size:69 final size:69
Alignment explanation
Indices: 67737926--67738062 Score: 175
Period size: 69 Copynumber: 2.0 Consensus size: 69
67737916 GGGAGGCTTG
* * * * *
67737926 AACACCATCGGCAACCTTGGTTCCTGGATGTGAGGGAGCCTTGAGCAACATCGGCACCTTGGTGC
1 AACACCATCGGCAACCTTGGTGCCTAGATATGAGGAAGCCTCGAGCAACATCGGCACCTTGGTGC
67737991 CTCA
66 CTCA
* * * ** *
67737995 AACACCATCGGTAACCTTGGTGCCTAGATATGTGGAAGCCTCGAGTAGTATCGGTACCTTGGTGC
1 AACACCATCGGCAACCTTGGTGCCTAGATATGAGGAAGCCTCGAGCAACATCGGCACCTTGGTGC
67738060 CTC
66 CTC
67738063 GGATGGACGA
Statistics
Matches: 57, Mismatches: 11, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
69 57 1.00
ACGTcount: A:0.22, C:0.27, G:0.27, T:0.24
Consensus pattern (69 bp):
AACACCATCGGCAACCTTGGTGCCTAGATATGAGGAAGCCTCGAGCAACATCGGCACCTTGGTGC
CTCA
Found at i:67738133 original size:43 final size:42
Alignment explanation
Indices: 67738086--67738207 Score: 97
Period size: 43 Copynumber: 2.9 Consensus size: 42
67738076 CCTCGAGTAG
67738086 CATCGGCACCTTGGTGCCTTGGATGTGTGGGAGCCTCAGACA
1 CATCGGCACCTTGGTGCCTTGGATGTGTGGGAGCCTCAGACA
* * * * * *
67738128 TCATCGGTGAACTAGG-CCCTTGG-TCGTGTAGGAGCCTCAGGCA
1 -CATCGG-CACCTTGGTGCCTTGGAT-GTGTGGGAGCCTCAGACA
* * * *
67738171 CTATCGACACCTTCGTG-CTTGAATGTGCGGGAGCCTC
1 C-ATCGGCACCTTGGTGCCTTGGATGTGTGGGAGCCTC
67738208 GAACACCATC
Statistics
Matches: 59, Mismatches: 15, Indels: 11
0.69 0.18 0.13
Matches are distributed among these distances:
42 21 0.36
43 33 0.56
44 5 0.08
ACGTcount: A:0.17, C:0.27, G:0.31, T:0.25
Consensus pattern (42 bp):
CATCGGCACCTTGGTGCCTTGGATGTGTGGGAGCCTCAGACA
Found at i:67738247 original size:85 final size:86
Alignment explanation
Indices: 67738087--67738256 Score: 202
Period size: 85 Copynumber: 2.0 Consensus size: 86
67738077 CTCGAGTAGC
* * * * * **
67738087 ATCGGCACCTTGGTGCCTTGGATGTGTGGGAGCCTCAGACATCATCGGTGAACTAGGCCCTTGGT
1 ATCGACACCTTCGTGCCTTGAATGTGCGGGAGCCTCAGACACCATCGGACAACTAGGCCCTTGGT
**
67738152 CGTGTAGGAGCCTCAGGCACT
66 CGTACAGGAGCCTCAGGCACT
67738173 ATCGACACCTTCGTG-CTTGAATGTGCGGGAGCCTC-GAACACCATC-GACAACCTAGGCCCTTG
1 ATCGACACCTTCGTGCCTTGAATGTGCGGGAGCCTCAG-ACACCATCGGACAA-CTAGGCCCTTG
* *
67738235 GTCGTACGGGAGCCTCGGGCAC
64 GTCGTACAGGAGCCTCAGGCAC
67738257 CATTGACAAG
Statistics
Matches: 71, Mismatches: 11, Indels: 5
0.82 0.13 0.06
Matches are distributed among these distances:
84 4 0.06
85 54 0.76
86 13 0.18
ACGTcount: A:0.19, C:0.29, G:0.31, T:0.22
Consensus pattern (86 bp):
ATCGACACCTTCGTGCCTTGAATGTGCGGGAGCCTCAGACACCATCGGACAACTAGGCCCTTGGT
CGTACAGGAGCCTCAGGCACT
Found at i:67738249 original size:43 final size:43
Alignment explanation
Indices: 67738198--67738379 Score: 161
Period size: 43 Copynumber: 4.3 Consensus size: 43
67738188 CTTGAATGTG
67738198 CGGGAGCCTCGAACACCATCGACAACCTAGGCCCTTGGTCGTA
1 CGGGAGCCTCGAACACCATCGACAACCTAGGCCCTTGGTCGTA
** * *
67738241 CGGGAGCCTCGGGCACCATTGACAAGCTAGGCCCTTGGTCGTA
1 CGGGAGCCTCGAACACCATCGACAACCTAGGCCCTTGGTCGTA
** * * * * ** *
67738284 CAAGAGCCTCGAGCACCATTGGC-ACCTTGGTGCTTAGAT-GTA
1 CGGGAGCCTCGAACACCATCGACAACCTAGGCCCTT-GGTCGTA
* * * * * *
67738326 TGGGATCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCATG
1 CGGGAGCCTCGAACACCATCGACAACCTAGGCCCTTGGTCGTA
*
67738369 CTGGAGCCTCG
1 CGGGAGCCTCG
67738380 GGTACCATCA
Statistics
Matches: 107, Mismatches: 29, Indels: 6
0.75 0.20 0.04
Matches are distributed among these distances:
42 29 0.27
43 78 0.73
ACGTcount: A:0.20, C:0.31, G:0.29, T:0.20
Consensus pattern (43 bp):
CGGGAGCCTCGAACACCATCGACAACCTAGGCCCTTGGTCGTA
Found at i:67738375 original size:128 final size:128
Alignment explanation
Indices: 67738139--67738387 Score: 322
Period size: 128 Copynumber: 1.9 Consensus size: 128
67738129 CATCGGTGAA
** * * *
67738139 CTAGGCCCTTGGTCGTGTAGGAGCCTCAGGCACTATCGACACCTTCGTGCTTGAATGTGCGGGAG
1 CTAGGCCCTTGGTCGTACAAGAGCCTCAGGCACCATCGACACCTTCGTGCTTGAATGTACGGGAG
*
67738204 CCTCGAACACCATCGACAACCTAGGCCCTTGGTCGTACGGGAGCCTCGGGCACCATTGACAAG
66 CCTCGAACACCATCGACAACCTAGGCCCTTGGTCATACGGGAGCCTCGGGCACCATTGACAAG
* * * *
67738267 CTAGGCCCTTGGTCGTACAAGAGCCTC-GAGCACCATTGGCACCTTGGTGCTT-AGATGTATGGG
1 CTAGGCCCTTGGTCGTACAAGAGCCTCAG-GCACCATCGACACCTTCGTGCTTGA-ATGTACGGG
* * * * * *
67738330 ATCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCATGCTGGAGCCTCGGGTACCAT
64 AGCCTCGAACACCATCGACAACCTAGGCCCTTGGTCATACGGGAGCCTCGGGCACCAT
67738388 CAGCACCCTC
Statistics
Matches: 103, Mismatches: 16, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
127 2 0.02
128 101 0.98
ACGTcount: A:0.20, C:0.30, G:0.29, T:0.22
Consensus pattern (128 bp):
CTAGGCCCTTGGTCGTACAAGAGCCTCAGGCACCATCGACACCTTCGTGCTTGAATGTACGGGAG
CCTCGAACACCATCGACAACCTAGGCCCTTGGTCATACGGGAGCCTCGGGCACCATTGACAAG
Found at i:67762326 original size:25 final size:25
Alignment explanation
Indices: 67762277--67762328 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 25
67762267 GCTGAATGCG
* *
67762277 ATGGCCTATTGTTGTTAAGTCGTCA
1 ATGGCCCATTGTTGTTAAATCGTCA
67762302 ATGGCCCATTGTTGTTAAAAT-GTCA
1 ATGGCCCATTGTTGTT-AAATCGTCA
67762327 AT
1 AT
67762329 CCTTTTATTA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 21 0.88
26 3 0.12
ACGTcount: A:0.25, C:0.15, G:0.21, T:0.38
Consensus pattern (25 bp):
ATGGCCCATTGTTGTTAAATCGTCA
Found at i:67770122 original size:43 final size:43
Alignment explanation
Indices: 67770046--67770606 Score: 548
Period size: 43 Copynumber: 13.2 Consensus size: 43
67770036 GGCACCAAGG
67770046 TGCCGATGGTGCCCGAGGCTC-CAGCACGACCAAGGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCTC-GCACGACCAAGGGCCTAGGT
** * * * ** *
67770089 TGCCGATGGTGTTCGAGTCTCCCACAC-ATCCAAGCACCAAGG-
1 TGCCGATGGTGCCCGAGGCTCTCGCACGA-CCAAGGGCCTAGGT
* * *
67770131 TGCCGATGGTGCCTGAGGCTCTCTCACAACCAAGGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGGT
** * * * *
67770174 TGCTAACGGTGCCCAAGGCTCTCACATGACCAAGGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGGT
* * *
67770217 TGCCAATGGTGCCCAAGGCTCTCACACGACCAAGGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGGT
* * *
67770260 TGCTGATGGTGCCCGAGGCTCTCGTACGGCCAAGGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGGT
* *
67770303 TACCGATGGTGCCCGAGGCTC-CGGCACGACCAAGTGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCTC-GCACGACCAAGGGCCTAGGT
* * * * *** * *
67770346 TACCAATGGTG-TCGAGGCTCCCGCAC-ATCCAAACACCAATG-
1 TGCCGATGGTGCCCGAGGCTCTCGCACGA-CCAAGGGCCTAGGT
* * *
67770387 TGCCAATGGTGCCCGAGGCTTTCGCACGACTAAGGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGGT
*
67770430 TACCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGGT
* * *
67770473 TGCCGATAGTGCCTGAGGCTCTCGTACGACCAAGGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGGT
* * ** *
67770516 TGCCAATGGTG-CCGAGGCTCCCGCAC-ATCCAAGCACCAAGG-
1 TGCCGATGGTGCCCGAGGCTCTCGCACGA-CCAAGGGCCTAGGT
* * * * *
67770557 TGTCGATGGTGCCTGAGGCTCTCACACGACCAATGGCCTAGTT
1 TGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGGT
67770600 TGCCGAT
1 TGCCGAT
67770607 AGTGTTCGAG
Statistics
Matches: 422, Mismatches: 82, Indels: 28
0.79 0.15 0.05
Matches are distributed among these distances:
41 21 0.05
42 114 0.27
43 286 0.68
44 1 0.00
ACGTcount: A:0.20, C:0.31, G:0.30, T:0.19
Consensus pattern (43 bp):
TGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGGT
Found at i:67770504 original size:256 final size:256
Alignment explanation
Indices: 67770048--67770663 Score: 718
Period size: 256 Copynumber: 2.4 Consensus size: 256
67770038 CACCAAGGTG
* * *
67770048 CCGATGGTGCCCGAGGCTCCAGCACGACCAAGGGCCTAGGTTGCCGATGGTGTTCGAGTCTCCCA
1 CCGATGGTGCCCGAGGCTCCAGCACGACCAAGGGCCTAGGTTACCAATGGTGTTCGAGGCTCCCA
* * * * * *
67770113 CACATCCAAGCACCAAGGTGCCGATGGTGCCTGAGGCTCTCTCACAACCAAGGGCCTAGGTTGCT
66 CACATCCAAACACCAAGGTGCCAATGGTGCCCGAGGCTCTCGCACAACCAAGGGCCTAGGTTACC
* *
67770178 AACGGTGCCCAAGGCTCTCACATGACCAAGGGCCTAGGTTGCCAATGGTGCCCAAGGCTCTCACA
131 AACGGTGCCCAAGGCTCTCACACGACCAAGGGCCTAGGTTGCCAATAGTGCCCAAGGCTCTCACA
**
67770243 CGACCAAGGGCCTAGGTTGCTGATGGTGCCCGAGGCTCTCGTACGGCCAAGGGCCTAGGTTA
196 CGACCAAGGGCCTAGGTTGCCAATGGTG-CCGAGGCTCTCGTACGGCCAAGGGCCTAGGTTA
* * *
67770305 CCGATGGTGCCCGAGGCTCCGGCACGACCAAGTGCCTAGGTTACCAATGGTG-TCGAGGCTCCCG
1 CCGATGGTGCCCGAGGCTCCAGCACGACCAAGGGCCTAGGTTACCAATGGTGTTCGAGGCTCCCA
* * * *
67770369 CACATCCAAACACCAATGTGCCAATGGTGCCCGAGGCTTTCGCACGACTAAGGGCCTAGGTTACC
66 CACATCCAAACACCAAGGTGCCAATGGTGCCCGAGGCTCTCGCACAACCAAGGGCCTAGGTTACC
* * * * * ** **
67770434 GATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCCGATAGTGCCTGAGGCTCTCGTA
131 AACGGTGCCCAAGGCTCTCACACGACCAAGGGCCTAGGTTGCCAATAGTGCCCAAGGCTCTCACA
* * ** ** *
67770499 CGACCAAGGGCCTAGGTTGCCAATGGTGCCGAGGCTCCCGCACATCCAAGCACCAAGGTGT-
196 CGACCAAGGGCCTAGGTTGCCAATGGTGCCGAGGCTCTCGTACGGCCAAGGGCCTAGGT-TA
* * * * * * *
67770560 -CGATGGTGCCTGAGGCTCTCA-CACGACCAATGGCCTAGTTTGCCGATAGTGTTCGAGGCTTCC
1 CCGATGGTGCCCGAGGCTC-CAGCACGACCAAGGGCCTAGGTTACCAATGGTGTTCGAGGCTCCC
* * ** * * *
67770623 GCACATCTAGGGCACTAAGGTGCCAATGCTGCTCGAGGCTC
65 ACACATCCA-AACACCAAGGTGCCAATGGTGCCCGAGGCTC
67770664 CCGTACATCT
Statistics
Matches: 302, Mismatches: 53, Indels: 9
0.83 0.15 0.02
Matches are distributed among these distances:
254 41 0.14
255 43 0.14
256 170 0.56
257 48 0.16
ACGTcount: A:0.20, C:0.31, G:0.30, T:0.19
Consensus pattern (256 bp):
CCGATGGTGCCCGAGGCTCCAGCACGACCAAGGGCCTAGGTTACCAATGGTGTTCGAGGCTCCCA
CACATCCAAACACCAAGGTGCCAATGGTGCCCGAGGCTCTCGCACAACCAAGGGCCTAGGTTACC
AACGGTGCCCAAGGCTCTCACACGACCAAGGGCCTAGGTTGCCAATAGTGCCCAAGGCTCTCACA
CGACCAAGGGCCTAGGTTGCCAATGGTGCCGAGGCTCTCGTACGGCCAAGGGCCTAGGTTA
Found at i:67770659 original size:43 final size:43
Alignment explanation
Indices: 67770612--67771096 Score: 225
Period size: 43 Copynumber: 11.3 Consensus size: 43
67770602 CCGATAGTGT
* *
67770612 TCGAGGCTTCCGCACATCTAGGGCACTAAGGTGCCAATGCTGC
1 TCGAGGCTTCCGCACATCTAGGGCACCAAGGTGCCGATGCTGC
* * * *
67770655 TCGAGGCTCCCGTACATCT-GAGGCACCAATGTACCGATGCTGC
1 TCGAGGCTTCCGCACATCTAG-GGCACCAAGGTGCCGATGCTGC
* *
67770698 TCGAGGCTTCAGCATATCTA-GGCACCAAGGTTGCCGATTG-TG-
1 TCGAGGCTTCCGCACATCTAGGGCACCAAGG-TGCCGA-TGCTGC
* * * * *
67770740 TCCGAGGC-TCCTGCACATCCA-AGCACCAAGATACCGATGTTGC
1 T-CGAGGCTTCC-GCACATCTAGGGCACCAAGGTGCCGATGCTGC
* * * *
67770783 TCGAGGC-TCCTGCACATCTAAGGAAACAAGGTGCTGATGCTGC
1 TCGAGGCTTCC-GCACATCTAGGGCACCAAGGTGCCGATGCTGC
* * * * * **
67770826 TCGAGGCTCCCGCACATC-CGAGGTACCAAGATGCTGATTTTGC
1 TCGAGGCTTCCGCACATCTAG-GGCACCAAGGTGCCGATGCTGC
* * * * * * *
67770869 TTGATGC-TCTCGTACATCCA-AGCA-CAAGGTTGCTGATGGTG-
1 TCGAGGCTTC-CGCACATCTAGGGCACCAAGG-TGCCGATGCTGC
* * *
67770910 TCCGAGGC-TCCTAG-ATATCCA-AGCACCAAGGTGCCGATGCTGC
1 T-CGAGGCTTCC--GCACATCTAGGGCACCAAGGTGCCGATGCTGC
* * * * *
67770953 TCGAGGC-TCTCGCACATCCAAGGTACCAAGGTGCCAATACTGC
1 TCGAGGCTTC-CGCACATCTAGGGCACCAAGGTGCCGATGCTGC
* * * * * *
67770996 TCGAGGCTCCCACACATC-CGAGGCACCAAGTTGCTGATGGTGC
1 TCGAGGCTTCCGCACATCTAG-GGCACCAAGGTGCCGATGCTGC
* * * * * *
67771039 TCGAAGCTCCCGCACATC-CGAGGCACCAATGTGCCAATGGTGC
1 TCGAGGCTTCCGCACATCTAG-GGCACCAAGGTGCCGATGCTGC
*
67771082 TTGAGG-TTCTCGCAC
1 TCGAGGCTTC-CGCAC
67771097 CACTGACGTC
Statistics
Matches: 344, Mismatches: 73, Indels: 50
0.74 0.16 0.11
Matches are distributed among these distances:
41 9 0.03
42 91 0.26
43 239 0.69
44 5 0.01
ACGTcount: A:0.22, C:0.30, G:0.26, T:0.21
Consensus pattern (43 bp):
TCGAGGCTTCCGCACATCTAGGGCACCAAGGTGCCGATGCTGC
Found at i:67770663 original size:170 final size:170
Alignment explanation
Indices: 67770022--67770606 Score: 680
Period size: 170 Copynumber: 3.4 Consensus size: 170
67770012 CTTTTCTTTA
* *
67770022 TCCCGCACATCCGAGGCACCAAGGTGCCGATGGTGCCCGAGGCTC-CAGCACGACCAAGGGCCTA
1 TCCCGCACATCC-AAGCACCAAGGTGCCAATGGTGCCCGAGGCTCTCA-CACGACCAAGGGCCTA
** * * * ** *
67770086 GGTTGCCGATGGTGTTCGAGTCTCCCACAC-ATCCAAGCACCAAGG-TGCCGATGGTGCCTGAGG
64 GGTTGCCGATGGTGCCCGAGGCTCTCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCTGAGG
* * * *
67770149 CTCTC-TCACAACCAAGGGCCTAGGTTGCTAACGGTGCCCAAGGC
128 CTCTCGT-ACGACCAAGGGCCTAGGTTGCCAATGGTG-CCGAGGC
* ** * *
67770193 T--CTCACATGACCAAGGGCCTAGGTTGCCAATGGTGCCCAAGGCTCTCACACGACCAAGGGCCT
1 TCCCGCACAT--CCAAGCACCAAGG-TGCCAATGGTGCCCGAGGCTCTCACACGACCAAGGGCCT
* * * * *
67770256 AGGTTGCTGATGGTGCCCGAGGCTCTCGTACGGCCAAGGGCCTAGGTTACCGATGGTGCCCGAGG
63 AGGTTGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCTGAGG
* * * *
67770321 CTC-CGGCACGACCAAGTGCCTAGGTTACCAATGGTGTCGAGGC
128 CTCTC-GTACGACCAAGGGCCTAGGTTGCCAATGGTGCCGAGGC
* * * * *
67770364 TCCCGCACATCCAAACACCAATGTGCCAATGGTGCCCGAGGCTTTCGCACGACTAAGGGCCTAGG
1 TCCCGCACATCCAAGCACCAAGGTGCCAATGGTGCCCGAGGCTCTCACACGACCAAGGGCCTAGG
* *
67770429 TTACCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCCGATAGTGCCTGAGGCTC
66 TTGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCTGAGGCTC
67770494 TCGTACGACCAAGGGCCTAGGTTGCCAATGGTGCCGAGGC
131 TCGTACGACCAAGGGCCTAGGTTGCCAATGGTGCCGAGGC
* * * * *
67770534 TCCCGCACATCCAAGCACCAAGGTGTCGATGGTGCCTGAGGCTCTCACACGACCAATGGCCTAGT
1 TCCCGCACATCCAAGCACCAAGGTGCCAATGGTGCCCGAGGCTCTCACACGACCAAGGGCCTAGG
67770599 TTGCCGAT
66 TTGCCGAT
67770607 AGTGTTCGAG
Statistics
Matches: 343, Mismatches: 60, Indels: 23
0.81 0.14 0.05
Matches are distributed among these distances:
169 6 0.02
170 199 0.58
171 87 0.25
172 45 0.13
173 6 0.02
ACGTcount: A:0.21, C:0.32, G:0.30, T:0.18
Consensus pattern (170 bp):
TCCCGCACATCCAAGCACCAAGGTGCCAATGGTGCCCGAGGCTCTCACACGACCAAGGGCCTAGG
TTGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCTGAGGCTC
TCGTACGACCAAGGGCCTAGGTTGCCAATGGTGCCGAGGC
Found at i:67770826 original size:128 final size:129
Alignment explanation
Indices: 67770599--67770833 Score: 294
Period size: 128 Copynumber: 1.8 Consensus size: 129
67770589 ATGGCCTAGT
* * * * * *
67770599 TTGCCGATAGTGTTCGAGGCTTCCGCACATCTAGGGCACTAAGGTGCCAATGCTGCTCGAGGCTC
1 TTGCCGATAGTGTCCGAGGCTTCCGCACATCCAGAGCACCAAGATACCAATGCTGCTCGAGGCTC
* * * * *
67770664 CCGTACATCTGAGGCACCAATGTACCGATGCTGCTCGAGGCTTCAGCATATCTAGGCACCAAGG
66 CCGCACATCTAAGGAAACAAGGTACCGATGCTGCTCGAGGCTTCAGCATATCTAGGCACCAAGG
* * *
67770728 TTGCCGATTGTGTCCGAGGC-TCCTGCACATCCA-AGCACCAAGATACCGATGTTGCTCGAGGCT
1 TTGCCGATAGTGTCCGAGGCTTCC-GCACATCCAGAGCACCAAGATACCAATGCTGCTCGAGGCT
* * *
67770791 CCTGCACATCTAAGGAAACAAGGTGCTGATGCTGCTCGAGGCT
65 CCCGCACATCTAAGGAAACAAGGTACCGATGCTGCTCGAGGCT
67770834 CCCGCACATC
Statistics
Matches: 88, Mismatches: 17, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
128 62 0.70
129 26 0.30
ACGTcount: A:0.22, C:0.29, G:0.27, T:0.23
Consensus pattern (129 bp):
TTGCCGATAGTGTCCGAGGCTTCCGCACATCCAGAGCACCAAGATACCAATGCTGCTCGAGGCTC
CCGCACATCTAAGGAAACAAGGTACCGATGCTGCTCGAGGCTTCAGCATATCTAGGCACCAAGG
Found at i:67770956 original size:170 final size:170
Alignment explanation
Indices: 67770639--67771033 Score: 456
Period size: 170 Copynumber: 2.3 Consensus size: 170
67770629 CTAGGGCACT
* ** * * * ** * *
67770639 AAGGTGCCAATGCTGCTCGAGGCTCCCGTACATCTGAGGCACCAATG-TACCGATGCTGCTCGAG
1 AAGGTGCCAATACTGCTCGAGGCTCCCACACATCCGAGGCACCAA-GATGCTGATTTTGCTTGAT
* * * * *
67770703 GCT-TCAGCATATCTAGGCACCAAGGTTGCCGATTGTGTCCGAGGCTCCTGCACATCCAAGCACC
65 GCTCTC-GTACATCCAAGCA-CAAGGTTGCCGATGGTGTCCGAGGCTCCTGCACATCCAAGCACC
* *
67770767 AAGATACCGATGTTGCTCGAGGCTC-CTGCACATCTAAGGAAAC
128 AAGATACCGATGCTGCTCGAGGCTCTC-GCACATCCAAGGAAAC
** * * *
67770810 AAGGTGCTGATGCTGCTCGAGGCTCCCGCACATCCGAGGTACCAAGATGCTGATTTTGCTTGATG
1 AAGGTGCCAATACTGCTCGAGGCTCCCACACATCCGAGGCACCAAGATGCTGATTTTGCTTGATG
* *
67770875 CTCTCGTACATCCAAGCACAAGGTTGCTGATGGTGTCCGAGGCTCCTAG-ATATCCAAGCACCAA
66 CTCTCGTACATCCAAGCACAAGGTTGCCGATGGTGTCCGAGGCTCCT-GCACATCCAAGCACCAA
* * * *
67770939 GGTGCCGATGCTGCTCGAGGCTCTCGCACATCCAAGGTACC
130 GATACCGATGCTGCTCGAGGCTCTCGCACATCCAAGGAAAC
*
67770980 AAGGTGCCAATACTGCTCGAGGCTCCCACACATCCGAGGCACCAAGTTGCTGAT
1 AAGGTGCCAATACTGCTCGAGGCTCCCACACATCCGAGGCACCAAGATGCTGAT
67771034 GGTGCTCGAA
Statistics
Matches: 190, Mismatches: 30, Indels: 9
0.83 0.13 0.04
Matches are distributed among these distances:
170 123 0.65
171 65 0.34
172 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.26, T:0.22
Consensus pattern (170 bp):
AAGGTGCCAATACTGCTCGAGGCTCCCACACATCCGAGGCACCAAGATGCTGATTTTGCTTGATG
CTCTCGTACATCCAAGCACAAGGTTGCCGATGGTGTCCGAGGCTCCTGCACATCCAAGCACCAAG
ATACCGATGCTGCTCGAGGCTCTCGCACATCCAAGGAAAC
Found at i:67771040 original size:86 final size:86
Alignment explanation
Indices: 67770612--67771096 Score: 375
Period size: 86 Copynumber: 5.7 Consensus size: 86
67770602 CCGATAGTGT
* * * * *
67770612 TCGAGGCT-TCCGCACATCTAGGGCACTAAGGTGCCAATGCTGCTCGAGGCTCCCGTACATCTGA
1 TCGAGGCTCT-CGCACATCCAAGGCACCAAGGTGCCAATGCTGCTCGAGGCTCCCGCACATCCGA
*
67770676 GGCACCAATG-TACCGATGCTGC
65 GGCACCAA-GATGCCGATGCTGC
* * * *
67770698 TCGAGGCT-TCAGCATAT-CTAGGCACCAAGGTTGCCGATTG-TG-TCCGAGGCTCCTGCACATC
1 TCGAGGCTCTC-GCACATCCAAGGCACCAAGG-TGCC-AATGCTGCT-CGAGGCTCCCGCACATC
* * *
67770759 C-AAGCACCAAGATACCGATGTTGC
62 CGAGGCACCAAGATGCCGATGCTGC
* * * **
67770783 TCGAGGCTC-CTGCACATCTAAGGAAACAAGGTGCTGATGCTGCTCGAGGCTCCCGCACATCCGA
1 TCGAGGCTCTC-GCACATCCAAGGCACCAAGGTGCCAATGCTGCTCGAGGCTCCCGCACATCCGA
* * **
67770847 GGTACCAAGATGCTGATTTTGC
65 GGCACCAAGATGCCGATGCTGC
* * * ** * * *
67770869 TTGATGCTCTCGTACATCCAA-GCA-CAAGGTTGCTGATGGTG-TCCGAGGCTCCTAG-ATATCC
1 TCGAGGCTCTCGCACATCCAAGGCACCAAGG-TGCCAATGCTGCT-CGAGGCTCC-CGCACATCC
* *
67770930 -AAGCACCAAGGTGCCGATGCTGC
63 GAGGCACCAAGATGCCGATGCTGC
* * *
67770953 TCGAGGCTCTCGCACATCCAAGGTACCAAGGTGCCAATACTGCTCGAGGCTCCCACACATCCGAG
1 TCGAGGCTCTCGCACATCCAAGGCACCAAGGTGCCAATGCTGCTCGAGGCTCCCGCACATCCGAG
* * *
67771018 GCACCAAGTTGCTGATGGTGC
66 GCACCAAGATGCCGATGCTGC
* * * * * * * *
67771039 TCGAAGCTCCCGCACATCCGAGGCACCAATGTGCCAATGGTGCTTGAGGTTCTCGCAC
1 TCGAGGCTCTCGCACATCCAAGGCACCAAGGTGCCAATGCTGCTCGAGGCTCCCGCAC
67771097 CACTGACGTC
Statistics
Matches: 314, Mismatches: 66, Indels: 38
0.75 0.16 0.09
Matches are distributed among these distances:
84 44 0.14
85 115 0.37
86 151 0.48
87 4 0.01
ACGTcount: A:0.22, C:0.30, G:0.26, T:0.21
Consensus pattern (86 bp):
TCGAGGCTCTCGCACATCCAAGGCACCAAGGTGCCAATGCTGCTCGAGGCTCCCGCACATCCGAG
GCACCAAGATGCCGATGCTGC
Found at i:67775455 original size:47 final size:47
Alignment explanation
Indices: 67775397--67775518 Score: 208
Period size: 47 Copynumber: 2.6 Consensus size: 47
67775387 GCATTGGCAC
*
67775397 TAAGACAAGGATACCATGTAACACCATGTTTGGAACATGGCATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
*
67775444 TAAGACAAGGATACCGTGTAAGACCATGTTTGGAACATGGCATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
* *
67775491 TAAGATAAGGATATCATGTAAGACCATG
1 TAAGACAAGGATACCATGTAAGACCATG
67775519 CCAAGGCATG
Statistics
Matches: 70, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 70 1.00
ACGTcount: A:0.35, C:0.15, G:0.25, T:0.25
Consensus pattern (47 bp):
TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
Found at i:67775626 original size:55 final size:54
Alignment explanation
Indices: 67775497--67775693 Score: 245
Period size: 54 Copynumber: 3.6 Consensus size: 54
67775487 TTGGTAAGAT
* * * *
67775497 AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGT
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGC
* * *
67775551 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTT-CTATAAGGC
* ** *
67775606 AAAGG-TCCCATGTAAGACCATGCCAAGGGATGGCATTGGTGAGTTC-ATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGC
* *
67775659 AAGGATACCACGTAAGACCATGTCAAGACATGGCA
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCA
67775694 ATGGTAAGTT
Statistics
Matches: 123, Mismatches: 17, Indels: 7
0.84 0.12 0.05
Matches are distributed among these distances:
52 4 0.03
53 32 0.26
54 42 0.34
55 41 0.33
56 4 0.03
ACGTcount: A:0.36, C:0.17, G:0.25, T:0.22
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGC
Found at i:67791977 original size:23 final size:25
Alignment explanation
Indices: 67791951--67791997 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
67791941 TATCATTCAT
*
67791951 TTCATTATAT-CA-ATATTTTATGC
1 TTCATCATATCCATATATTTTATGC
*
67791974 TTCATCATTTCCATATATTTTATG
1 TTCATCATATCCATATATTTTATG
67791998 TATATTTATT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 8 0.40
24 2 0.10
25 10 0.50
ACGTcount: A:0.28, C:0.15, G:0.04, T:0.53
Consensus pattern (25 bp):
TTCATCATATCCATATATTTTATGC
Found at i:67792320 original size:46 final size:46
Alignment explanation
Indices: 67792268--67792522 Score: 319
Period size: 46 Copynumber: 5.7 Consensus size: 46
67792258 TGCTATAGTG
* * ** * *
67792268 TCTTTCAACTATGGTCTTACTCATTTTTTGTCATGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACATTTCATATCAAGTTGCCATGGTA
** * * *
67792314 TCTTTCAACCATGGTCTTATTCTTTTCATGTCACGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACATTTCATATCAAGTTGCCATGGTA
* *
67792360 TCTTTCAACCATGGTCTTACACATCTCATATCAAGTTGCCATAGTA
1 TCTTTCAACCATGGTCTTACACATTTCATATCAAGTTGCCATGGTA
*
67792406 TCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACATTTCATATCAAGTTGCCATGGTA
*
67792452 TCTTTCAACCATGGTCTT--ACA---C--A-CAGGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACATTTCATATCAAGTTGCCATGGTA
67792490 TCTTTCAACCATGGTCTTACACATTTCATATCA
1 TCTTTCAACCATGGTCTTACACATTTCATATCA
67792523 GAGAGCACAC
Statistics
Matches: 185, Mismatches: 16, Indels: 16
0.85 0.07 0.07
Matches are distributed among these distances:
38 33 0.18
39 1 0.01
40 3 0.02
41 1 0.01
43 1 0.01
44 3 0.02
45 1 0.01
46 142 0.77
ACGTcount: A:0.23, C:0.24, G:0.14, T:0.39
Consensus pattern (46 bp):
TCTTTCAACCATGGTCTTACACATTTCATATCAAGTTGCCATGGTA
Found at i:67792488 original size:38 final size:38
Alignment explanation
Indices: 67792437--67792512 Score: 152
Period size: 38 Copynumber: 2.0 Consensus size: 38
67792427 CATTTCATAT
67792437 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
1 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
67792475 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
1 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
67792513 TTTCATATCA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.24, C:0.26, G:0.18, T:0.32
Consensus pattern (38 bp):
CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
Found at i:67797898 original size:29 final size:29
Alignment explanation
Indices: 67797833--67797888 Score: 112
Period size: 29 Copynumber: 1.9 Consensus size: 29
67797823 TGGAAATGCC
67797833 TTATATTAATAAACATGGTAAATCAAGCA
1 TTATATTAATAAACATGGTAAATCAAGCA
67797862 TTATATTAATAAACATGGTAAATCAAG
1 TTATATTAATAAACATGGTAAATCAAG
67797889 TATGTTATTA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.48, C:0.09, G:0.11, T:0.32
Consensus pattern (29 bp):
TTATATTAATAAACATGGTAAATCAAGCA
Found at i:67797968 original size:14 final size:14
Alignment explanation
Indices: 67797949--67797978 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
67797939 AACCCTTCAT
*
67797949 TCCCTCATTCATCA
1 TCCCTCATCCATCA
67797963 TCCCTCATCCATCA
1 TCCCTCATCCATCA
67797977 TC
1 TC
67797979 ATTCTTTCTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.20, C:0.47, G:0.00, T:0.33
Consensus pattern (14 bp):
TCCCTCATCCATCA
Found at i:67803679 original size:43 final size:43
Alignment explanation
Indices: 67803589--67803692 Score: 104
Period size: 43 Copynumber: 2.4 Consensus size: 43
67803579 CATATCCGGG
* * * *
67803589 CACCAAGGTGCCGATGCTACCCGATGCTCCCGCACATTCGATG
1 CACCAAGGTGCCGATGCTACCCGACGCTCACGCACATCCGATA
* *
67803632 CACCAAGGTGCC-AGTGCTGCCCGACGCTCACTCACATCC-AGTA
1 CACCAAGGTGCCGA-TGCTACCCGACGCTCACGCACATCCGA-TA
* *
67803675 CACCAAAGTGTCGATGCT
1 CACCAAGGTGCCGATGCT
67803693 GCTCCAGGTT
Statistics
Matches: 50, Mismatches: 8, Indels: 6
0.78 0.12 0.09
Matches are distributed among these distances:
42 2 0.04
43 47 0.94
44 1 0.02
ACGTcount: A:0.23, C:0.37, G:0.22, T:0.18
Consensus pattern (43 bp):
CACCAAGGTGCCGATGCTACCCGACGCTCACGCACATCCGATA
Found at i:67806121 original size:48 final size:48
Alignment explanation
Indices: 67805995--67806142 Score: 203
Period size: 48 Copynumber: 3.1 Consensus size: 48
67805985 TTAATATTGG
* * * *
67805995 GAGATATGTGTGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCAC
1 GAGATATGAGAGCCAGTGTAAGACATGTCTGGGACATGCATCAGCCTC
*
67806043 -A-ATATGAGAGCCAGTGTAAGATATGTCTGGGACATGCATCAGCCTC
1 GAGATATGAGAGCCAGTGTAAGACATGTCTGGGACATGCATCAGCCTC
* *
67806089 GAGATATTTA-AGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTC
1 GAGATA-TGAGAGCCAGTGTAAGACATGTCTGGGACATGCATCAGCCTC
67806137 GAGATA
1 GAGATA
67806143 GACAAGTTAA
Statistics
Matches: 89, Mismatches: 8, Indels: 6
0.86 0.08 0.06
Matches are distributed among these distances:
46 40 0.45
47 2 0.02
48 45 0.51
49 2 0.02
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.24
Consensus pattern (48 bp):
GAGATATGAGAGCCAGTGTAAGACATGTCTGGGACATGCATCAGCCTC
Found at i:67806157 original size:48 final size:47
Alignment explanation
Indices: 67806009--67806174 Score: 194
Period size: 48 Copynumber: 3.5 Consensus size: 47
67805999 TATGTGTGCT
* *
67806009 AGTGTAAGACATGTCTGGGACATGCATCAGCCAC-A-ATATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGATA-GAAAGCC
* **
67806055 AGTGTAAGATATGTCTGGGACATGCATCAGCCTCGAGATATTTAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGATA-GAAAGCC
* **
67806103 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATAGACAAGTT
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGATAGA-AAGCC
*
67806151 AATGTAAGAGC-TGTCTGGGACATG
1 AGTGTAAGA-CATGTCTGGGACATG
67806175 GCGTCAACTT
Statistics
Matches: 104, Mismatches: 12, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
46 32 0.31
47 1 0.01
48 70 0.67
49 1 0.01
ACGTcount: A:0.30, C:0.19, G:0.28, T:0.23
Consensus pattern (47 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGATAGAAAGCC
Found at i:67808781 original size:56 final size:54
Alignment explanation
Indices: 67808686--67808844 Score: 174
Period size: 56 Copynumber: 2.9 Consensus size: 54
67808676 TTTGATGACA
** *
67808686 TGATACATGCTAGGTCTGGGAGCTTGTGTAGCCCTGTTGAGAGGCATGTAATTATG
1 TGATACACACTAGGTCTGGGAGCTTATGTAGCCCTGTTGAGAGGC--GTAATTATG
* * * **
67808742 TGGTACACACTAGGTCTAGGAGCTTATGTAGCCCTGTTGAGAGTCGTGGTTATG
1 TGATACACACTAGGTCTGGGAGCTTATGTAGCCCTGTTGAGAGGCGTAATTATG
* ** *
67808796 TGATGCATGCTAGGTCTGGGTGCTCTTATGTAGCCCTGTTGAGAGGCGT
1 TGATACACACTAGGTCTGGGAG--CTTATGTAGCCCTGTTGAGAGGCGT
67808845 GCTATGTTAT
Statistics
Matches: 86, Mismatches: 15, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
54 23 0.27
56 63 0.73
ACGTcount: A:0.19, C:0.16, G:0.33, T:0.32
Consensus pattern (54 bp):
TGATACACACTAGGTCTGGGAGCTTATGTAGCCCTGTTGAGAGGCGTAATTATG
Found at i:67811188 original size:20 final size:21
Alignment explanation
Indices: 67811149--67811188 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
67811139 GTTATAAGGA
67811149 CCATACGGGAGTGTTGCCCTT
1 CCATACGGGAGTGTTGCCCTT
* *
67811170 CCATATGGGTGTG-TGCCCT
1 CCATACGGGAGTGTTGCCCT
67811189 GTTTCAAGAG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.12, C:0.28, G:0.30, T:0.30
Consensus pattern (21 bp):
CCATACGGGAGTGTTGCCCTT
Found at i:67820506 original size:37 final size:37
Alignment explanation
Indices: 67820444--67820583 Score: 244
Period size: 37 Copynumber: 3.8 Consensus size: 37
67820434 CGAATAGTCC
* *
67820444 CCACACATAGTTATCGGGTCTTACCCGGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
*
67820481 CCGCACGTAGTCATCGGGTCTTACCCGGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
*
67820518 GCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
67820555 CCACACGTAGTCATCGGGTCTTACCCGGA
1 CCACACGTAGTCATCGGGTCTTACCCGGA
67820584 ATACATTTCC
Statistics
Matches: 97, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 97 1.00
ACGTcount: A:0.26, C:0.31, G:0.21, T:0.22
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
Found at i:67820699 original size:48 final size:48
Alignment explanation
Indices: 67820628--67820845 Score: 346
Period size: 48 Copynumber: 4.5 Consensus size: 48
67820618 TGTTACAACA
*
67820628 TTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATAT
* *
67820676 TTCACATTCGCCATTCGGCTTTACCACATATACATATCTCATATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATAT
67820724 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATAT
* * * * * *
67820772 TTCACATTCGCCATTCGGCTTTACCACATACACATGTCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATAT
*
67820820 TTCACATTAGCCATTCGGCTTCACCA
1 TTCACATTAGCCATTCGGCTTTACCA
67820846 TACATATATA
Statistics
Matches: 157, Mismatches: 13, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
48 157 1.00
ACGTcount: A:0.29, C:0.29, G:0.07, T:0.34
Consensus pattern (48 bp):
TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATAT
Found at i:67820746 original size:96 final size:96
Alignment explanation
Indices: 67820628--67820845 Score: 382
Period size: 96 Copynumber: 2.3 Consensus size: 96
67820618 TGTTACAACA
*
67820628 TTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTCGCCATTCG
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTCGCCATTCG
* * *
67820693 GCTTTACCACATATACATATCTCATATATAT
66 GCTTTACCACATACACATATCACACATATAT
67820724 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTCGCCATTCG
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTCGCCATTCG
*
67820789 GCTTTACCACATACACATGTCACACATATAT
66 GCTTTACCACATACACATATCACACATATAT
*
67820820 TTCACATTAGCCATTCGGCTTCACCA
1 TTCACATTAGCCATTCGGCTTTACCA
67820846 TACATATATA
Statistics
Matches: 116, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
96 116 1.00
ACGTcount: A:0.29, C:0.29, G:0.07, T:0.34
Consensus pattern (96 bp):
TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTCGCCATTCG
GCTTTACCACATACACATATCACACATATAT
Found at i:67823783 original size:40 final size:40
Alignment explanation
Indices: 67823726--67824160 Score: 575
Period size: 40 Copynumber: 10.9 Consensus size: 40
67823716 CGAATACACG
* * * * *
67823726 TCACTAGCATGATTGCTCTTCGGGACCTAGCCCGGATATAA
1 TCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATA-CA
* *** * * *
67823767 T-ACCAGCACGAATGCTCTTCGGGGTTTAGCACAGATATA
1 TCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACA
*
67823806 TCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATATA
1 TCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACA
* * * *
67823846 TCACTAGCATGAATGCTCTTCGGGACTTAGCCTGGCTACA
1 TCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACA
**
67823886 TCACTAGCACGAATGCTCTTCGGAACTTAGTTCGGATACA
1 TCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACA
* * *
67823926 TCACTAGCACGAATGCTCTTTGGGACTTAGCCCGGCTACA
1 TCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACA
*
67823966 TCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACA
1 TCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACA
* * * *
67824006 TCACTAGCACGAATGCTTTTCGGGACTTAGCTCGGCTACA
1 TCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACA
* *
67824046 TCACTAGCACGAATGCTCTTCGGAACTTAGTCCGAATACA
1 TCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACA
*
67824086 TCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATATA
1 TCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACA
*
67824126 TCACTAGCACGAATGCTCTTCGGAACTTAGTCCGG
1 TCACTAGCACGAATGCTCTTCGGAACTTAGCCCGG
67824161 CTATACAACT
Statistics
Matches: 343, Mismatches: 50, Indels: 3
0.87 0.13 0.01
Matches are distributed among these distances:
39 2 0.01
40 340 0.99
41 1 0.00
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (40 bp):
TCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACA
Found at i:67826165 original size:37 final size:37
Alignment explanation
Indices: 67826109--67826211 Score: 179
Period size: 37 Copynumber: 2.8 Consensus size: 37
67826099 CGAATAGTCC
* *
67826109 CCACATGTAGTTATCGGGTCTTACCCGGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
*
67826146 CCGCACGTAGTCATCGGGTCTTACCCGGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
67826183 CCACACGTAGTCATCGGGTCTTACCCGGA
1 CCACACGTAGTCATCGGGTCTTACCCGGA
67826212 ATACATTTCC
Statistics
Matches: 62, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 62 1.00
ACGTcount: A:0.24, C:0.31, G:0.21, T:0.23
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
Found at i:67826327 original size:48 final size:48
Alignment explanation
Indices: 67826256--67826484 Score: 359
Period size: 48 Copynumber: 4.8 Consensus size: 48
67826246 TGTTACAACA
67826256 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATAT
* *
67826304 TTCACATTCGCCATTCGGCTTTACCACATATACATATCTCATATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATAT
67826352 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATAT
* * * * * *
67826400 TTCACATTCGCCATTCGGCTTTACCACATACACATGTCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATAT
* * *
67826448 TTCACATTAGCCATTCGGCTTCACCACACATATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATAT
67826485 ATTTATCTTG
Statistics
Matches: 165, Mismatches: 16, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
48 165 1.00
ACGTcount: A:0.30, C:0.28, G:0.07, T:0.34
Consensus pattern (48 bp):
TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATAT
Found at i:67826373 original size:96 final size:96
Alignment explanation
Indices: 67826256--67826484 Score: 395
Period size: 96 Copynumber: 2.4 Consensus size: 96
67826246 TGTTACAACA
67826256 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTCGCCATTCG
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTCGCCATTCG
* * *
67826321 GCTTTACCACATATACATATCTCATATATAT
66 GCTTTACCACATACACATATCACACATATAT
67826352 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTCGCCATTCG
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTCGCCATTCG
*
67826417 GCTTTACCACATACACATGTCACACATATAT
66 GCTTTACCACATACACATATCACACATATAT
* * *
67826448 TTCACATTAGCCATTCGGCTTCACCACACATATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATAT
67826485 ATTTATCTTG
Statistics
Matches: 126, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
96 126 1.00
ACGTcount: A:0.30, C:0.28, G:0.07, T:0.34
Consensus pattern (96 bp):
TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTCGCCATTCG
GCTTTACCACATACACATATCACACATATAT
Found at i:67836061 original size:27 final size:27
Alignment explanation
Indices: 67836030--67836207 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
67836020 TAAATTGTAC
67836030 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
67836057 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
67836083 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
67836111 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
67836139 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
67836166 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
67836193 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
67836208 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:67836144 original size:82 final size:81
Alignment explanation
Indices: 67836031--67836186 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
67836021 AAATTGTACA
* *
67836031 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
67836095 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
67836112 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
67836177 TGCGAGTTGA
65 TGCGAATTGA
67836187 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:67836198 original size:82 final size:81
Alignment explanation
Indices: 67836027--67836207 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
67836017 GATTAAATTG
* *
67836027 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
67836092 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
67836108 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
67836172 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
67836190 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
67836208 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:67843519 original size:48 final size:46
Alignment explanation
Indices: 67843411--67843590 Score: 195
Period size: 46 Copynumber: 3.9 Consensus size: 46
67843401 TATGTGTGCT
* * *
67843411 AGTGTAAGACATGTCTGGGTCATGCATCGACCAC-A-ATATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATAT-A-AGCC
*
67843457 AGTGTAAGACATGTCTAGGACATGCATCGGCCTCGAGATATTTAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATA--TAAGCC
* * * * * *
67843505 AGTGTAAGATATGTCTGGGACATGCATCGGCATTGAGACGA-GAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGA-TATAAGCC
*
67843551 AGTGTAAGACATGTTTGGGACATGCATCGGCCTCGAGATA
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATA
67843591 GACAAGCTAG
Statistics
Matches: 113, Mismatches: 16, Indels: 11
0.81 0.11 0.08
Matches are distributed among these distances:
45 1 0.01
46 67 0.59
47 1 0.01
48 41 0.36
49 2 0.02
50 1 0.01
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.24
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATAAGCC
Found at i:67843621 original size:94 final size:95
Alignment explanation
Indices: 67843450--67843628 Score: 234
Period size: 94 Copynumber: 1.9 Consensus size: 95
67843440 ACCACAATAT
*** * *
67843450 GAGAGCCAGTGTAAGACATGTCTAGGACATGCATCGGCCTCGAGATATTTAAGCCAGTGTAAGAT
1 GAGAGCCAGTGTAAGACATGTCTAGGACATGCATCGGCCTCGAGATAGACAAGCCAGAGTAAGAC
* **
67843515 ATGTCTGGGACAT-GCATCGGCATTGAGAC
66 ATATCTAAGACATGGCATCGGCATTGAGAC
* * * *
67843544 GAGAGCTAGTGTAAGACATGTTTGGGACATGCATCGGCCTCGAGATAGACAAGCTAGAGTAAGAC
1 GAGAGCCAGTGTAAGACATGTCTAGGACATGCATCGGCCTCGAGATAGACAAGCCAGAGTAAGAC
*
67843609 CTATCTAAGACATGGCATCG
66 ATATCTAAGACATGGCATCG
67843629 ACACCGATAG
Statistics
Matches: 71, Mismatches: 13, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
94 65 0.92
95 6 0.08
ACGTcount: A:0.30, C:0.19, G:0.28, T:0.22
Consensus pattern (95 bp):
GAGAGCCAGTGTAAGACATGTCTAGGACATGCATCGGCCTCGAGATAGACAAGCCAGAGTAAGAC
ATATCTAAGACATGGCATCGGCATTGAGAC
Found at i:67844936 original size:20 final size:21
Alignment explanation
Indices: 67844876--67844936 Score: 97
Period size: 21 Copynumber: 3.0 Consensus size: 21
67844866 CATGTTAGGA
*
67844876 CCACACAGGCATGTTGCCCTT
1 CCACACGGGCATGTTGCCCTT
67844897 CCACACGGGCATGTTGCCCTT
1 CCACACGGGCATGTTGCCCTT
*
67844918 CCACACGGGCGTG-TGCCCT
1 CCACACGGGCATGTTGCCCT
67844937 ATTTCAAGAG
Statistics
Matches: 38, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
20 6 0.16
21 32 0.84
ACGTcount: A:0.15, C:0.39, G:0.25, T:0.21
Consensus pattern (21 bp):
CCACACGGGCATGTTGCCCTT
Found at i:67862328 original size:40 final size:40
Alignment explanation
Indices: 67862261--67862497 Score: 393
Period size: 40 Copynumber: 5.9 Consensus size: 40
67862251 ATAACCGCAA
* * * *
67862261 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
67862301 GCACGAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* * *
67862341 GCATAATTTCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
67862381 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
67862421 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
67862461 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAA
67862498 ATGCTCATGC
Statistics
Matches: 183, Mismatches: 14, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 183 1.00
ACGTcount: A:0.24, C:0.29, G:0.21, T:0.27
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
Found at i:67870537 original size:40 final size:40
Alignment explanation
Indices: 67870486--67870722 Score: 393
Period size: 40 Copynumber: 5.9 Consensus size: 40
67870476 ATAACCGCTA
* * * *
67870486 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* * *
67870526 GCACGAATGCCTTTGGGTCTTAGCCCGGATATATCAACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
67870566 GCATAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
67870606 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
67870646 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
67870686 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAA
67870723 ATGCTCATGC
Statistics
Matches: 183, Mismatches: 14, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 183 1.00
ACGTcount: A:0.24, C:0.28, G:0.21, T:0.27
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
Found at i:67876566 original size:47 final size:47
Alignment explanation
Indices: 67876514--67876823 Score: 476
Period size: 47 Copynumber: 6.6 Consensus size: 47
67876504 GATAATTGTG
* *
67876514 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
67876561 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
67876608 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
67876657 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
67876704 ATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * * *
67876751 ATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGG
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
67876798 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
67876824 TCCCGAAGGG
Statistics
Matches: 241, Mismatches: 20, Indels: 4
0.91 0.08 0.02
Matches are distributed among these distances:
47 196 0.81
49 45 0.19
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:67876661 original size:143 final size:141
Alignment explanation
Indices: 67876514--67876823 Score: 476
Period size: 143 Copynumber: 2.2 Consensus size: 141
67876504 GATAATTGTG
* * *
67876514 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATAT
* *
67876579 GTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATG
66 GTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG--TATATATGTGACAAGGCCGAATG
* *
67876644 GCCGATGTGATGA
129 GCCAACGTGATGA
67876657 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATAT
* * * * *
67876722 GTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGC
66 GTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGACAAGGCCGAATGGC
*
67876787 CAACGTGATGG
131 CAACGTGATGA
*
67876798 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
67876824 TCCCGAAGGG
Statistics
Matches: 153, Mismatches: 14, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
141 54 0.35
143 99 0.65
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (141 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATAT
GTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGACAAGGCCGAATGGC
CAACGTGATGA
Found at i:67879446 original size:40 final size:40
Alignment explanation
Indices: 67879383--67879650 Score: 412
Period size: 40 Copynumber: 6.7 Consensus size: 40
67879373 AGGTCTCGAC
67879383 GATG-ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
*
67879422 GATGTATCTGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
*
67879462 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
*
67879502 GATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
* *
67879542 GATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
* * ** *
67879582 GATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCTGGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
* * *
67879622 GTTATATCCGGGCTAGGTCCCGAAGAGCA
1 GATGTATCCGGGCTAAGTCCCGAAGAGCA
67879651 ATCATGCTGG
Statistics
Matches: 212, Mismatches: 16, Indels: 1
0.93 0.07 0.00
Matches are distributed among these distances:
39 4 0.02
40 208 0.98
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.25
Consensus pattern (40 bp):
GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
Found at i:67882068 original size:47 final size:47
Alignment explanation
Indices: 67882016--67882325 Score: 458
Period size: 47 Copynumber: 6.6 Consensus size: 47
67882006 GATAATTGTG
* *
67882016 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
67882063 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
67882110 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * *
67882159 ATGTGAAAGTGTATATATGTAATAAGGCCTAATAGTCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
67882206 ATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * * *
67882253 ATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGG
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
67882300 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
67882326 TCCCGAAGGG
Statistics
Matches: 237, Mismatches: 24, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
47 192 0.81
49 45 0.19
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:67882163 original size:143 final size:141
Alignment explanation
Indices: 67882016--67882325 Score: 458
Period size: 143 Copynumber: 2.2 Consensus size: 141
67882006 GATAATTGTG
* * *
67882016 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATAT
* *
67882081 GTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATG
66 GTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG--TATATATGTGACAAGGCCGAATG
* *
67882146 GCCGATGTGATGA
129 GCCAACGTGATGA
* *
67882159 ATGTGAAAGTGTATATATGTAATAAGGCCTAATAGTCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATAT
* * * * *
67882224 GTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGC
66 GTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGACAAGGCCGAATGGC
*
67882289 CAACGTGATGG
131 CAACGTGATGA
*
67882300 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
67882326 TCCCGAAGGG
Statistics
Matches: 150, Mismatches: 17, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
141 53 0.35
143 97 0.65
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (141 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATAT
GTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGACAAGGCCGAATGGC
CAACGTGATGA
Found at i:67895698 original size:19 final size:19
Alignment explanation
Indices: 67895662--67895698 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
67895652 TAGCCCATCA
*
67895662 GGCCCATTTAGCCTATTCT
1 GGCCCATTTAGCCAATTCT
*
67895681 GGCCCATTTTGCCAATTC
1 GGCCCATTTAGCCAATTC
67895699 ATAACCCAAG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.16, C:0.32, G:0.16, T:0.35
Consensus pattern (19 bp):
GGCCCATTTAGCCAATTCT
Found at i:67895823 original size:8 final size:8
Alignment explanation
Indices: 67895796--67895846 Score: 57
Period size: 8 Copynumber: 6.4 Consensus size: 8
67895786 ATAGCCAAAC
67895796 TTTCGGCT
1 TTTCGGCT
* *
67895804 TTTCAGCA
1 TTTCGGCT
67895812 TTTCGGCT
1 TTTCGGCT
67895820 TTTCGGCT
1 TTTCGGCT
* *
67895828 TTTTGGCA
1 TTTCGGCT
*
67895836 TTTCAGCT
1 TTTCGGCT
67895844 TTT
1 TTT
67895847 GCCAATCTAA
Statistics
Matches: 34, Mismatches: 9, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
8 34 1.00
ACGTcount: A:0.08, C:0.22, G:0.20, T:0.51
Consensus pattern (8 bp):
TTTCGGCT
Found at i:67895826 original size:24 final size:24
Alignment explanation
Indices: 67895796--67895846 Score: 75
Period size: 24 Copynumber: 2.1 Consensus size: 24
67895786 ATAGCCAAAC
*
67895796 TTTCGGCTTTTCAGCATTTCGGCT
1 TTTCGGCTTTTCAGCATTTCAGCT
**
67895820 TTTCGGCTTTTTGGCATTTCAGCT
1 TTTCGGCTTTTCAGCATTTCAGCT
67895844 TTT
1 TTT
67895847 GCCAATCTAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.08, C:0.22, G:0.20, T:0.51
Consensus pattern (24 bp):
TTTCGGCTTTTCAGCATTTCAGCT
Found at i:67897037 original size:17 final size:16
Alignment explanation
Indices: 67897004--67897035 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
67896994 AATTTCGAGA
67897004 TTTCAAGATTTTTGGG
1 TTTCAAGATTTTTGGG
*
67897020 TTTCGAGATTTTTGGG
1 TTTCAAGATTTTTGGG
67897036 GTGTTACAAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.16, C:0.06, G:0.28, T:0.50
Consensus pattern (16 bp):
TTTCAAGATTTTTGGG
Found at i:67903050 original size:28 final size:28
Alignment explanation
Indices: 67903014--67903098 Score: 109
Period size: 28 Copynumber: 3.1 Consensus size: 28
67903004 CACATACCTA
67903014 TATATGGCCCATTAGGCCCAATCACATT
1 TATATGGCCCATTAGGCCCAATCACATT
* *
67903042 TATGTGGCCCATTAGGCCCAATCAAATT
1 TATATGGCCCATTAGGCCCAATCACATT
* * * *
67903070 CATACGG-CCATTAAGCCCAATAACATT
1 TATATGGCCCATTAGGCCCAATCACATT
67903097 TA
1 TA
67903099 CAGTTATGCT
Statistics
Matches: 48, Mismatches: 9, Indels: 1
0.83 0.16 0.02
Matches are distributed among these distances:
27 18 0.38
28 30 0.62
ACGTcount: A:0.32, C:0.27, G:0.14, T:0.27
Consensus pattern (28 bp):
TATATGGCCCATTAGGCCCAATCACATT
Found at i:67908253 original size:46 final size:44
Alignment explanation
Indices: 67908155--67908269 Score: 151
Period size: 46 Copynumber: 2.5 Consensus size: 44
67908145 TGTGCCATGC
*
67908155 CATGTCCCAGACATGGTCTTACACTGACACATCTTGTAGCCGATG
1 CATGTCCCAGACAT-GTCTTACACTGACACATCTCGTAGCCGATG
**
67908200 CATGTCCCAGACATGTCTTACACTGACTTATGTCTCG-AGGCCGATG
1 CATGTCCCAGACATGTCTTACACTGAC--ACATCTCGTA-GCCGATG
*
67908246 CATGTCCCAAACATGTCTTACACT
1 CATGTCCCAGACATGTCTTACACT
67908270 AGTACTCGTC
Statistics
Matches: 63, Mismatches: 4, Indels: 5
0.88 0.06 0.07
Matches are distributed among these distances:
44 13 0.21
45 15 0.24
46 35 0.56
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.28
Consensus pattern (44 bp):
CATGTCCCAGACATGTCTTACACTGACACATCTCGTAGCCGATG
Found at i:67913939 original size:20 final size:21
Alignment explanation
Indices: 67913914--67913952 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
67913904 TGATTTCTTC
*
67913914 TTTTATTCCTATT-TTTATTT
1 TTTTATTCATATTATTTATTT
67913934 TTTTATTCATATTATTTAT
1 TTTTATTCATATTATTTAT
67913953 GATATTATAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.21, C:0.08, G:0.00, T:0.72
Consensus pattern (21 bp):
TTTTATTCATATTATTTATTT
Found at i:67916356 original size:75 final size:75
Alignment explanation
Indices: 67916233--67916384 Score: 304
Period size: 75 Copynumber: 2.0 Consensus size: 75
67916223 TACATAAAAT
67916233 ATACTGAAATATAAAAACATAATAAAGATAATTATACTTTCTCATTTCCATGTCGAATTAATATT
1 ATACTGAAATATAAAAACATAATAAAGATAATTATACTTTCTCATTTCCATGTCGAATTAATATT
67916298 GAACATTTAA
66 GAACATTTAA
67916308 ATACTGAAATATAAAAACATAATAAAGATAATTATACTTTCTCATTTCCATGTCGAATTAATATT
1 ATACTGAAATATAAAAACATAATAAAGATAATTATACTTTCTCATTTCCATGTCGAATTAATATT
67916373 GAACATTTAA
66 GAACATTTAA
67916383 AT
1 AT
67916385 CATCATAATT
Statistics
Matches: 77, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
75 77 1.00
ACGTcount: A:0.45, C:0.12, G:0.07, T:0.36
Consensus pattern (75 bp):
ATACTGAAATATAAAAACATAATAAAGATAATTATACTTTCTCATTTCCATGTCGAATTAATATT
GAACATTTAA
Found at i:67916651 original size:30 final size:30
Alignment explanation
Indices: 67916617--67916677 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
67916607 TCATTAACTC
67916617 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
67916647 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
67916677 A
1 A
67916678 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:67920979 original size:43 final size:42
Alignment explanation
Indices: 67920929--67921074 Score: 157
Period size: 43 Copynumber: 3.4 Consensus size: 42
67920919 AATGCTAACA
* **
67920929 TCCCAGACGTGGTCTTATATGTAATCACATATCGATGCCACTG
1 TCCCAGACATGGTCTTATACATAATCACATATCGATGCCAC-G
* *
67920972 TCCCAGACATGGTCTTACACATAACCACATATCGATGCCAACG
1 TCCCAGACATGGTCTTATACATAATCACATATCGATGCC-ACG
* * * * * *
67921015 TCTCAGACCTAGTCTTATACATAATCATATATCAATGCCAACA
1 TCCCAGACATGGTCTTATACATAATCACATATCGATGCC-ACG
*
67921058 TCCCATACATGGTCTTA
1 TCCCAGACATGGTCTTA
67921075 CATGAGAACA
Statistics
Matches: 85, Mismatches: 17, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
43 83 0.98
44 2 0.02
ACGTcount: A:0.31, C:0.28, G:0.13, T:0.28
Consensus pattern (42 bp):
TCCCAGACATGGTCTTATACATAATCACATATCGATGCCACG
Found at i:67921090 original size:43 final size:42
Alignment explanation
Indices: 67920914--67921091 Score: 130
Period size: 43 Copynumber: 4.2 Consensus size: 42
67920904 TCACACATAT
* * * *
67920914 CATA-CAATGCTAACATCCCAGACGTGGTCTTATATGTAATCA
1 CATATCAATGCCAACATCCCAGACATGGTCTTACATG-AAACA
* * *
67920956 CATATCGATGCC-ACTGTCCCAGACATGGTCTTACACAT-AACCA
1 CATATCAATGCCAAC-ATCCCAGACATGGTCTT--ACATGAAACA
* * * * * *
67920999 CATATCGATGCCAACGTCTCAGACCTAGTCTTATACAT-AATCA
1 CATATCAATGCCAACATCCCAGACATGGTC-T-TACATGAAACA
* *
67921042 TATATCAATGCCAACATCCCATACATGGTCTTACATGAGAACA
1 CATATCAATGCCAACATCCCAGACATGGTCTTACATGA-AACA
67921085 CATATCA
1 CATATCA
67921092 GAAATCGTAC
Statistics
Matches: 108, Mismatches: 19, Indels: 17
0.75 0.13 0.12
Matches are distributed among these distances:
41 5 0.05
42 8 0.07
43 88 0.81
44 3 0.03
45 4 0.04
ACGTcount: A:0.34, C:0.28, G:0.12, T:0.26
Consensus pattern (42 bp):
CATATCAATGCCAACATCCCAGACATGGTCTTACATGAAACA
Found at i:67922218 original size:14 final size:15
Alignment explanation
Indices: 67922201--67922229 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
67922191 ACACGAAAAT
67922201 TTCACAGAT-ATAAA
1 TTCACAGATAATAAA
67922215 TTCACAGATAATAAA
1 TTCACAGATAATAAA
67922230 CACAAAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.52, C:0.14, G:0.07, T:0.28
Consensus pattern (15 bp):
TTCACAGATAATAAA
Found at i:67929238 original size:120 final size:120
Alignment explanation
Indices: 67929008--67929263 Score: 410
Period size: 120 Copynumber: 2.1 Consensus size: 120
67928998 AACCCAAGTA
* * *
67929008 CCTTCGGGATTTAG-CCGGATATAGCAACTCGCACAAATGCCTTCGGGACTTAGCCCAGATATAG
1 CCTTCGGGACTTAGTCCAGATATAGCAACTAGCACAAATGCCTTCGGGACTTAGCCCAGATATAG
* *
67929072 TAACTAGCACAGATGCCTTTGGGACTTAGCCTGGATATAGTCACTAGCACAAATG
66 TAACTAGCACAAATGCCTTCGGGACTTAGCCTGGATATAGTCACTAGCACAAATG
* *
67929127 CCTTCGGGACTTAGTCCAGATATAGTC-ACTAGCACAAATGCCTTCGGGACTTAGTCCGGATATA
1 CCTTCGGGACTTAGTCCAGATATAG-CAACTAGCACAAATGCCTTCGGGACTTAGCCCAGATATA
67929191 GTAACTAGCACAAATGCCTTCGGGACTTAGCCTGGATATAGTCACTAGCACAAATG
65 GTAACTAGCACAAATGCCTTCGGGACTTAGCCTGGATATAGTCACTAGCACAAATG
67929247 CCTTC-GGATCTTAGTCC
1 CCTTCGGGA-CTTAGTCC
67929264 GGTTATCATC
Statistics
Matches: 127, Mismatches: 7, Indels: 5
0.91 0.05 0.04
Matches are distributed among these distances:
119 16 0.13
120 110 0.87
121 1 0.01
ACGTcount: A:0.28, C:0.25, G:0.22, T:0.25
Consensus pattern (120 bp):
CCTTCGGGACTTAGTCCAGATATAGCAACTAGCACAAATGCCTTCGGGACTTAGCCCAGATATAG
TAACTAGCACAAATGCCTTCGGGACTTAGCCTGGATATAGTCACTAGCACAAATG
Found at i:67929260 original size:40 final size:39
Alignment explanation
Indices: 67929008--67929253 Score: 359
Period size: 40 Copynumber: 6.2 Consensus size: 39
67928998 AACCCAAGTA
* *
67929008 CCTTCGGGATTTAGCCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCGGATATAGTC-ACTAGCACAAATG
* * *
67929047 CCTTCGGGACTTAGCCCAGATATAGTAACTAGCACAGATG
1 CCTTCGGGACTTAG-CCGGATATAGTCACTAGCACAAATG
*
67929087 CCTTTGGGACTTAGCCTGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCC-GGATATAGTCACTAGCACAAATG
*
67929127 CCTTCGGGACTTAGTCCAGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAG-CCGGATATAGTCACTAGCACAAATG
*
67929167 CCTTCGGGACTTAGTCCGGATATAGTAACTAGCACAAATG
1 CCTTCGGGACTTAG-CCGGATATAGTCACTAGCACAAATG
67929207 CCTTCGGGACTTAGCCTGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCC-GGATATAGTCACTAGCACAAATG
67929247 CCTTCGG
1 CCTTCGG
67929254 ATCTTAGTCC
Statistics
Matches: 188, Mismatches: 14, Indels: 9
0.89 0.07 0.04
Matches are distributed among these distances:
39 17 0.09
40 169 0.90
41 2 0.01
ACGTcount: A:0.28, C:0.25, G:0.22, T:0.25
Consensus pattern (39 bp):
CCTTCGGGACTTAGCCGGATATAGTCACTAGCACAAATG
Found at i:67937055 original size:91 final size:90
Alignment explanation
Indices: 67936900--67937080 Score: 301
Period size: 91 Copynumber: 2.0 Consensus size: 90
67936890 TTCAAGTAAA
*
67936900 AACAAAATTTTTGCATAAGCCAAGGCTGAACTCAGGACTTCTCAGACACTTTCCAGAACACCTAA
1 AACAAAATTTTTGCATAAGCCAAGGCTAAACTCAGGACTTCTCAGACACTTTCCAGAACACCTAA
*
67936965 GCACTGAACCAGATACACAATTGTG
66 CCACTGAACCAGATACACAATTGTG
*
67936990 AACAAAATTTTTGCATAAGCCAAGGCTTAAACTCAGGACTTCTCAGACAC-TTCCTAGAACTCCT
1 AACAAAATTTTTGCATAAGCCAAGGC-TAAACTCAGGACTTCTCAGACACTTTCC-AGAACACCT
*
67937054 AACCACTGAACCAGATACATAATTGTG
64 AACCACTGAACCAGATACACAATTGTG
67937081 TGTCACAACA
Statistics
Matches: 85, Mismatches: 4, Indels: 3
0.92 0.04 0.03
Matches are distributed among these distances:
90 30 0.35
91 55 0.65
ACGTcount: A:0.36, C:0.25, G:0.14, T:0.24
Consensus pattern (90 bp):
AACAAAATTTTTGCATAAGCCAAGGCTAAACTCAGGACTTCTCAGACACTTTCCAGAACACCTAA
CCACTGAACCAGATACACAATTGTG
Found at i:67943038 original size:43 final size:43
Alignment explanation
Indices: 67942983--67943139 Score: 228
Period size: 43 Copynumber: 3.7 Consensus size: 43
67942973 ATATTGTACA
* *
67942983 ATGCCAACGTCCCAGACCTGGTCTTACATGTAATCATATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCACATATCG
*
67943026 ATGCC-ACTGTCCCAGACAG-GGTCTTACATGTAATCACATACCG
1 ATGCCAAC-GTCCCAGAC-GTGGTCTTACATGTAATCACATATCG
* * *
67943069 ATGCCAACGTCCCAGATGTGGTCTTATACGTAATCACATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCACATATCG
67943112 ATGCCAACGTCCCAGACGTGGTCTTACA
1 ATGCCAACGTCCCAGACGTGGTCTTACA
67943140 CGAGAACCCA
Statistics
Matches: 101, Mismatches: 9, Indels: 8
0.86 0.08 0.07
Matches are distributed among these distances:
42 3 0.03
43 96 0.95
44 2 0.02
ACGTcount: A:0.27, C:0.29, G:0.18, T:0.25
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCACATATCG
Found at i:67944464 original size:42 final size:42
Alignment explanation
Indices: 67944405--67944501 Score: 158
Period size: 42 Copynumber: 2.3 Consensus size: 42
67944395 TTACAAACAC
* * * *
67944405 ACACGCCCATGTAGCTAGCTTGTGTGCCCTAAAAATGGTCAT
1 ACACGCCCGTGTGGCTAGCCTGTATGCCCTAAAAATGGTCAT
67944447 ACACGCCCGTGTGGCTAGCCTGTATGCCCTAAAAATGGTCAT
1 ACACGCCCGTGTGGCTAGCCTGTATGCCCTAAAAATGGTCAT
67944489 ACACGCCCGTGTG
1 ACACGCCCGTGTG
67944502 CCAGGACGTG
Statistics
Matches: 51, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
42 51 1.00
ACGTcount: A:0.24, C:0.29, G:0.24, T:0.24
Consensus pattern (42 bp):
ACACGCCCGTGTGGCTAGCCTGTATGCCCTAAAAATGGTCAT
Found at i:67957923 original size:30 final size:30
Alignment explanation
Indices: 67957889--67957993 Score: 88
Period size: 30 Copynumber: 3.5 Consensus size: 30
67957879 AGCTTACTCC
* *
67957889 TAGCTCATTTTCAACTCACGAGCTAAACCT
1 TAGCTCATTTTCAGCTCAAGAGCTAAACCT
** * * * *
67957919 TAGCTCAACTTCAGCTTAGGAGTTTAACCT
1 TAGCTCATTTTCAGCTCAAGAGCTAAACCT
* * *
67957949 CAGCTCAATTTT-AGCTCAAGGGCTAAAGCT
1 TAGCTC-ATTTTCAGCTCAAGAGCTAAACCT
67957979 TAGCTCATTTT-AGCT
1 TAGCTCATTTTCAGCT
67957994 TAAACCCAAT
Statistics
Matches: 57, Mismatches: 17, Indels: 3
0.74 0.22 0.04
Matches are distributed among these distances:
29 9 0.16
30 45 0.79
31 3 0.05
ACGTcount: A:0.28, C:0.25, G:0.15, T:0.32
Consensus pattern (30 bp):
TAGCTCATTTTCAGCTCAAGAGCTAAACCT
Found at i:67982048 original size:12 final size:12
Alignment explanation
Indices: 67982031--67982056 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
67982021 TGTTAGAGTG
67982031 TGAATTTGATGT
1 TGAATTTGATGT
67982043 TGAATTTGATGT
1 TGAATTTGATGT
67982055 TG
1 TG
67982057 CCATAGAAGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.23, C:0.00, G:0.27, T:0.50
Consensus pattern (12 bp):
TGAATTTGATGT
Found at i:67982718 original size:53 final size:53
Alignment explanation
Indices: 67982536--67982789 Score: 234
Period size: 55 Copynumber: 4.8 Consensus size: 53
67982526 ATTAGGGTTT
* * * *
67982536 AAGGATACCATGT-AGACCATGCCAAGGCATGGAAATTGGTAAGGTCCCTAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGG-CATTGGTAA-GTTCATAAGGC
* * * * *
67982590 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTACTATAAGAC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTT-C-ATAAGGC
* * *
67982645 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCATAAGGC
* *
67982698 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTT--TCAA---
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCAT-AAGGC
* * * * *
67982747 AAGGATACCACGTAAGACCGTGACAAGTCATGGCAATGGTAAG
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAG
67982790 GTACCCGTGT
Statistics
Matches: 168, Mismatches: 26, Indels: 17
0.80 0.12 0.08
Matches are distributed among these distances:
49 39 0.23
51 1 0.01
52 6 0.04
53 43 0.26
54 20 0.12
55 55 0.33
56 4 0.02
ACGTcount: A:0.36, C:0.18, G:0.25, T:0.20
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCATAAGGC
Found at i:67982741 original size:108 final size:109
Alignment explanation
Indices: 67982543--67982742 Score: 305
Period size: 108 Copynumber: 1.8 Consensus size: 109
67982533 TTTAAGGATA
* *
67982543 CCATGTAGACCATGCCAAGGCATGGAAATTGGTAAGGTCCCTAAGGCAAGGAAATCATGTAAGAC
1 CCATGTAGACCATGCCAAGGCATGGAAATTGGTAAGGTCCATAAGGCAAGGAAACCATGTAAGAC
*
67982608 CATGTCAAGACATGGCATTGATAAGTTACTATAAGACAAAGGTC
66 CATGTCAAGACATGGCAATGATAAGTTACTATAAGACAAAGGTC
* * * *
67982652 CCATGTAAGACCATGCCAAGGCATGG-CATTGGTGA-GTTCATAAGGCAAGGATACCATGTAAGA
1 CCATGT-AGACCATGCCAAGGCATGGAAATTGGTAAGGTCCATAAGGCAAGGAAACCATGTAAGA
*
67982715 CCATGTCAAGACATGGCAATGGTAAGTT
65 CCATGTCAAGACATGGCAATGATAAGTT
67982743 TCAAAAGGAT
Statistics
Matches: 82, Mismatches: 8, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
108 50 0.61
109 13 0.16
110 19 0.23
ACGTcount: A:0.35, C:0.18, G:0.25, T:0.21
Consensus pattern (109 bp):
CCATGTAGACCATGCCAAGGCATGGAAATTGGTAAGGTCCATAAGGCAAGGAAACCATGTAAGAC
CATGTCAAGACATGGCAATGATAAGTTACTATAAGACAAAGGTC
Found at i:67986981 original size:12 final size:12
Alignment explanation
Indices: 67986964--67986989 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
67986954 AAAATAGGGC
67986964 TTTAGCGGCGTT
1 TTTAGCGGCGTT
67986976 TTTAGCGGCGTT
1 TTTAGCGGCGTT
67986988 TT
1 TT
67986990 ATCAAAAAAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.08, C:0.15, G:0.31, T:0.46
Consensus pattern (12 bp):
TTTAGCGGCGTT
Found at i:67987064 original size:40 final size:39
Alignment explanation
Indices: 67987013--67987195 Score: 116
Period size: 41 Copynumber: 4.5 Consensus size: 39
67987003 GCAAAAATTG
67987013 TAAAACACAGAGCAATAGCGG-TGTTTTAACAAAAACGCCAC
1 TAAAA-ACAGAGCAATAGCGGCT-TTTT-ACAAAAACGCCAC
* *** *
67987054 TAAAAACAGAGTAATAGCGGCTTTTTGTTAAAACGCCGC
1 TAAAAACAGAGCAATAGCGGCTTTTTACAAAAACGCCAC
* * *** * *
67987093 TAAAAACAGAGCATTAGCGGCGCTTTTGGTAAAACGTCGC
1 TAAAAACAGAGCAATAGCGGC-TTTTTACAAAAACGCCAC
* * * ** *
67987133 TAAAGACCAGAGCATTAGCGGCGCTTTTAGTAAAACGCCGC
1 TAAA-AACAGAGCAATAGCGGC-TTTTTACAAAAACGCCAC
* *
67987174 TAAAGACCAGAGCATTAGCGGC
1 TAAA-AACAGAGCAATAGCGGC
67987196 GCATTCGGTA
Statistics
Matches: 126, Mismatches: 13, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
39 28 0.22
40 37 0.29
41 61 0.48
ACGTcount: A:0.36, C:0.21, G:0.22, T:0.20
Consensus pattern (39 bp):
TAAAAACAGAGCAATAGCGGCTTTTTACAAAAACGCCAC
Found at i:67987144 original size:41 final size:41
Alignment explanation
Indices: 67987044--67987258 Score: 303
Period size: 41 Copynumber: 5.3 Consensus size: 41
67987034 TGTTTTAACA
* * * * * *
67987044 AAAACGCCACTAAA-AACAGAGTAATAGCGGC-TTTTTGTT
1 AAAACGCCGCTAAAGACCAGAGCATTAGCGGCGCTTTTGGT
*
67987083 AAAACGCCGCTAAA-AACAGAGCATTAGCGGCGCTTTTGGT
1 AAAACGCCGCTAAAGACCAGAGCATTAGCGGCGCTTTTGGT
* *
67987123 AAAACGTCGCTAAAGACCAGAGCATTAGCGGCGCTTTTAGT
1 AAAACGCCGCTAAAGACCAGAGCATTAGCGGCGCTTTTGGT
* *
67987164 AAAACGCCGCTAAAGACCAGAGCATTAGCGGCGCATTCGGT
1 AAAACGCCGCTAAAGACCAGAGCATTAGCGGCGCTTTTGGT
67987205 AAAACGCCGCTAAAGACCAGAGCATT-GCGGCGCTTTTGGT
1 AAAACGCCGCTAAAGACCAGAGCATTAGCGGCGCTTTTGGT
67987245 AAAACGCCGCTAAA
1 AAAACGCCGCTAAA
67987259 AGTCATATAG
Statistics
Matches: 160, Mismatches: 14, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
39 28 0.17
40 45 0.28
41 87 0.54
ACGTcount: A:0.33, C:0.23, G:0.24, T:0.20
Consensus pattern (41 bp):
AAAACGCCGCTAAAGACCAGAGCATTAGCGGCGCTTTTGGT
Found at i:67987333 original size:78 final size:79
Alignment explanation
Indices: 67987234--67987381 Score: 280
Period size: 78 Copynumber: 1.9 Consensus size: 79
67987224 GAGCATTGCG
*
67987234 GCGCTTTTGGTAAAACGCCGCTAAAAGTCATATAGTCTTAAAATTCTAAACCCTAAAAAAACCAT
1 GCGCTTTTGGTAAAAAGCCGCTAAAAGTCATATAGTCTTAAAATTCTAAACCCTAAAAAAACCAT
67987299 AAAACGCTTTAGCA
66 AAAACGCTTTAGCA
67987313 GCGC-TTTGGTAAAAAGCCGCTAAAAGTCATATAGTCTTAAAATTCTAAACCCTAAAAAAACCAT
1 GCGCTTTTGGTAAAAAGCCGCTAAAAGTCATATAGTCTTAAAATTCTAAACCCTAAAAAAACCAT
67987377 AAAAC
66 AAAAC
67987382 ACTAATCTAT
Statistics
Matches: 68, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
78 64 0.94
79 4 0.06
ACGTcount: A:0.43, C:0.21, G:0.12, T:0.24
Consensus pattern (79 bp):
GCGCTTTTGGTAAAAAGCCGCTAAAAGTCATATAGTCTTAAAATTCTAAACCCTAAAAAAACCAT
AAAACGCTTTAGCA
Found at i:67988039 original size:10 final size:10
Alignment explanation
Indices: 67988024--67988048 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
67988014 AATTTTTATT
67988024 ATATATATAA
1 ATATATATAA
67988034 ATATATATAA
1 ATATATATAA
67988044 ATATA
1 ATATA
67988049 AAAATACATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (10 bp):
ATATATATAA
Found at i:67993879 original size:25 final size:24
Alignment explanation
Indices: 67993840--67993891 Score: 95
Period size: 25 Copynumber: 2.1 Consensus size: 24
67993830 GTAAGGAGGG
67993840 GATAAGGGAGAAGATTTAGGAGCT
1 GATAAGGGAGAAGATTTAGGAGCT
67993864 GATAAGGGGAGAAGATTTAGGAGCT
1 GATAA-GGGAGAAGATTTAGGAGCT
67993889 GAT
1 GAT
67993892 CAAAGAGCAA
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
24 5 0.19
25 22 0.81
ACGTcount: A:0.37, C:0.04, G:0.38, T:0.21
Consensus pattern (24 bp):
GATAAGGGAGAAGATTTAGGAGCT
Done.