Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100714657
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 3970000 characters in sequence are not A, C, G, or T
File 215 of 318
Found at i:67995341 original size:27 final size:27
Alignment explanation
Indices: 67995292--67995402 Score: 120
Period size: 27 Copynumber: 4.1 Consensus size: 27
67995282 AGGAAGCATC
* * *
67995292 CTGGTGGCTATGCGACA-ACTATCTGAT
1 CTGGTGGCTCTGCCACATA-TATCTGTT
*
67995319 CTGGTGGTTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACATATATCTGTT
*
67995346 CTGGTGGCTCTGCAACA-ATTATCTGTT
1 CTGGTGGCTCTGCCACATA-TATCTGTT
* *
67995373 CTGGTGACTCTGTCACAT-TATCTGTT
1 CTGGTGGCTCTGCCACATATATCTGTT
67995399 CTGG
1 CTGG
67995403 CAGCCATGCT
Statistics
Matches: 72, Mismatches: 9, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
26 13 0.18
27 58 0.81
28 1 0.01
ACGTcount: A:0.17, C:0.23, G:0.23, T:0.37
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACATATATCTGTT
Found at i:67995376 original size:54 final size:53
Alignment explanation
Indices: 67995292--67995402 Score: 150
Period size: 54 Copynumber: 2.1 Consensus size: 53
67995282 AGGAAGCATC
* **
67995292 CTGGTGGCTATGCGACAACTATCTGATCTGGTGGTTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCAACAACTATCTGATCTGGTGACTCTGCCACAT-TATCTGTT
* * * *
67995346 CTGGTGGCTCTGCAACAATTATCTGTTCTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTATGCAACAACTATCTGATCTGGTGACTCTGCCACATTATCTGTT
67995399 CTGG
1 CTGG
67995403 CAGCCATGCT
Statistics
Matches: 50, Mismatches: 7, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
53 12 0.24
54 38 0.76
ACGTcount: A:0.17, C:0.23, G:0.23, T:0.37
Consensus pattern (53 bp):
CTGGTGGCTATGCAACAACTATCTGATCTGGTGACTCTGCCACATTATCTGTT
Found at i:68001215 original size:181 final size:179
Alignment explanation
Indices: 68000907--68001446 Score: 778
Period size: 181 Copynumber: 3.0 Consensus size: 179
68000897 GTAAGAAGTT
* * * *
68000907 AGTTAAACACTTGGCCGTGCCACTCCCTCAGAAAATATGGCACAACGGGGGCCGTGGTGGTGCGG
1 AGTTAAACACTTGGCCGTGCCGC-CCCCCAGGAAACATGGCACAACGGGGGCCGTGGTGGTGCGG
* * * *
68000972 GTGCGAGCTCCCAACTGTTGGTGGTCCCGGCACTTGTTTAATTTTCTGCTGTGCCGTGCCATGCC
65 GTGCGAGCTCCCAACTGTTGGTGGT-CCGGCACTTGTTCAATTTTCTACCGTGCCATGCCATGCC
68001037 ATACTTCATTCGGCTTCTTTTATTTGTTTTGGGCCAATAGAAAAAATTTCTA
129 ATACTTCATTCGGCTTCTTTTATTT-TTTTGGGCCAATAGAAAAAATTTCTA
* * * *
68001089 AGTTAAACACTTGGCCGTGCTGCCCCCCAGGAAACATGGTACAACGGGGGCCATGGTGGTGCTGG
1 AGTTAAACACTTGGCCGTGCCGCCCCCCAGGAAACATGGCACAACGGGGGCCGTGGTGGTGCGGG
* *
68001154 TGCGAGCTCCTAACTGTTGGCGGTCCGAGCACTTGTTCAATTTTCTACCGTGCCATGCCATGCCA
66 TGCGAGCTCCCAACTGTTGGTGGTCCG-GCACTTGTTCAATTTTCTACCGTGCCATGCCATGCCA
* *
68001219 TACTTCATTCGGATTCTTTTATTTTTTTGGGGCCAACAGAAAAAATTTCTA
130 TACTTCATTCGGCTTCTTTTATTTTTTT-GGGCCAATAGAAAAAATTTCTA
* *
68001270 AGTTAAACACTTGGCCGTGCCGCCCCCTCAGGAAACATGGCACAATGGGGGCCGTGGTGGTGGGG
1 AGTTAAACACTTGGCCGTGCCGCCCCC-CAGGAAACATGGCACAACGGGGGCCGTGGTGGTGCGG
* * *
68001335 GTGCAAGCTCCCAACTGTTGGTGGTTCGGGCACTTGTTCAATTTTCTTCCGTGCCAT--CATGCC
65 GTGCGAGCTCCCAACTGTTGGTGG-TCCGGCACTTGTTCAATTTTCTACCGTGCCATGCCATGCC
* * *
68001398 ATATTTCATTCGGCTTATTGTATTTCTTTTGGGCCAATAGAAAAAATTT
129 ATACTTCATTCGGCTTCTTTTATTT-TTTTGGGCCAATAGAAAAAATTT
68001447 TCAGCTAAAA
Statistics
Matches: 321, Mismatches: 32, Indels: 12
0.88 0.09 0.03
Matches are distributed among these distances:
180 52 0.16
181 165 0.51
182 101 0.31
183 3 0.01
ACGTcount: A:0.21, C:0.24, G:0.25, T:0.30
Consensus pattern (179 bp):
AGTTAAACACTTGGCCGTGCCGCCCCCCAGGAAACATGGCACAACGGGGGCCGTGGTGGTGCGGG
TGCGAGCTCCCAACTGTTGGTGGTCCGGCACTTGTTCAATTTTCTACCGTGCCATGCCATGCCAT
ACTTCATTCGGCTTCTTTTATTTTTTTGGGCCAATAGAAAAAATTTCTA
Found at i:68001966 original size:58 final size:58
Alignment explanation
Indices: 68001893--68002008 Score: 178
Period size: 58 Copynumber: 2.0 Consensus size: 58
68001883 TCTAATCCAA
* * *
68001893 AAAGGTAGAGTTCGGATACCGTTACATGTTCGGTGCCCAATAATGAATGAAGCGTCCC
1 AAAGGTAGAATTCGGATACCGTTACATGTTCGGTACCCAACAATGAATGAAGCGTCCC
* * *
68001951 AAAGGTAGAATTCGGATTCCGTTGCATGTTCGGTACCCAACAATGAATGAATCGTCCC
1 AAAGGTAGAATTCGGATACCGTTACATGTTCGGTACCCAACAATGAATGAAGCGTCCC
68002009 TGTCCTCCCC
Statistics
Matches: 52, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
58 52 1.00
ACGTcount: A:0.29, C:0.22, G:0.24, T:0.25
Consensus pattern (58 bp):
AAAGGTAGAATTCGGATACCGTTACATGTTCGGTACCCAACAATGAATGAAGCGTCCC
Found at i:68004393 original size:20 final size:20
Alignment explanation
Indices: 68004368--68004409 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
68004358 TGGGAACCCT
68004368 GCGACAGTTCGTGATTTGAA
1 GCGACAGTTCGTGATTTGAA
68004388 GCGACAGTTCGTGATTTGAA
1 GCGACAGTTCGTGATTTGAA
68004408 GC
1 GC
68004410 AACTTCTCGT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.24, C:0.17, G:0.31, T:0.29
Consensus pattern (20 bp):
GCGACAGTTCGTGATTTGAA
Found at i:68008933 original size:42 final size:43
Alignment explanation
Indices: 68008882--68009033 Score: 182
Period size: 43 Copynumber: 3.6 Consensus size: 43
68008872 GTCGGTGGTC
*
68008882 CGAGAGCCTCGAGCAGCATCGACACCTTAGTG-CTCGGATGTG
1 CGAGAGCCTCGAGCAGCATCGGCACCTTAGTGCCTCGGATGTG
* * *
68008924 CGAGAGCCTCGAGCAGCATCGGTACCTTGGTGCCTCAGATGTG
1 CGAGAGCCTCGAGCAGCATCGGCACCTTAGTGCCTCGGATGTG
* * * * *
68008967 TGAGAGCCTCGAGCAGCATTGGCACCTTAGGGCCTTGCATGTG
1 CGAGAGCCTCGAGCAGCATCGGCACCTTAGTGCCTCGGATGTG
* *
68009010 CGGGAGCCTCG-GACACCATCGGCA
1 CGAGAGCCTCGAG-CAGCATCGGCA
68009034 AACTAGGCCC
Statistics
Matches: 92, Mismatches: 16, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
42 30 0.33
43 62 0.67
ACGTcount: A:0.20, C:0.29, G:0.32, T:0.19
Consensus pattern (43 bp):
CGAGAGCCTCGAGCAGCATCGGCACCTTAGTGCCTCGGATGTG
Found at i:68009060 original size:43 final size:43
Alignment explanation
Indices: 68009007--68010686 Score: 1346
Period size: 43 Copynumber: 39.5 Consensus size: 43
68008997 GGCCTTGCAT
* * * *
68009007 GTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTAGTT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * * * **
68009050 GTCCGAGAGCCTGGGGCACCATCAGCACCCT-GGTGCTTGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TC
* * * * ***
68009092 ATGTGGGAGCCTTGGGCACCATCGGC-ACCTTGATGCTTGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TC
* * *
68009134 GTGCGAGATCCTC-GGCACCATCGGCAACCTAGGCTCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * * *
68009176 GTACAGGAGCCTCGGGCACCATCGGTAACCCAGGCCCTTGATC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * *
68009219 GTACGGGAGCCTCGGGTACCATTGGCAACCTAGGCCCTTGATC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * *
68009262 GTGCGGGAGCCTCGGGCACAATCAGG-AACCTAGACACTTGGTC
1 GTGCGGGAGCCTCGGGCACCATC-GGCAACCTAGGCCCTTGGTC
* * * **
68009305 GTGCGAGAGCCTC-GACACCATCGGC-ACCTTGGTGCTTGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TC
* * * * ***
68009346 GTGCGGGAGCCTCAGACACCATCGGC-ACTTCGTTGCTTGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TC
* * *
68009388 GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCTTTGATC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* *
68009431 GTACGGGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * ** *
68009474 ATGCGGGAACCTCGGGCACCATCGAAAACCTAGGCCCTTGATC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * *
68009517 ATGCGGGAGCCTCGGGCGCCATCTGCAGCCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* ** * *
68009560 GTAG-GAGAGCCTC-GGCACCGCCGGC-ACCTTGG-ACTTGGAT-
1 GT-GCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TC
* * * ** *
68009600 GTGCGGGAGCCTCAGACACCATCGGC-ACCTTGGTGCTTAGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTT-GGTC
* * * * *
68009642 GTGCGTGAGCCTCGGACACCATCGGCAACCTAGACCCTTGTTT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * ** * ** *
68009685 GTGTGAGAGCCAC-GGCACCATCAAC-ACCTTGGTGCTTAGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTT-GGTC
* * ** * * * **
68009726 GTACGAGTTCCTCAGACACCATCGG-AACCTTGGTGCTTGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TC
* *
68009768 ATGCGGGAGCCTTGGGCACCATCGGCAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * *
68009811 GTGCGGGAGCCTCAGGCACCATCGGCAACTTAGGCCCTTGATC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
*
68009854 GTGCGGGAGCCTCGGGTACCATCGGCAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * * * *
68009897 GTGTGGGAGCCTTGAGCACCATTGGCAACCTAGGCCATTGCTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * * * * * * * * *
68009940 CTGTGGGAACCTCGAGCACCATTGGTAATCTAGGTCGTTGATT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * *
68009983 GTGTGGGGGCCTCGGGCACCATCGGCAACC-AGGGCCTTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTA-GGCCCTTGGTC
* * * * **
68010026 GTGCGAGAGCCT-AGGCACCATCGG-TACCTTGGTGCTTGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TC
* ** * * **
68010067 GTACGGGAGCCTCGTACACCATCGG-TACCTTGGTGCTTGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TC
* *
68010109 GTGCGGAAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* *
68010152 GTGCGGGAGCCTTGGGCACCATCGACAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * *
68010195 GTGTGGAAGCCTTGGGCACCATCGGCAACCTAGGCCCTTGATC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* ** * *
68010238 GTGCGGGATCCTCTAGCACCATCAGTAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* ** * *
68010281 ATGCGGGAGCCTTAGGCACCATCGGTAACCTAGGCCCTTGGTT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * *
68010324 GTGCGGGAGCCTCGAGCACCATCGGTAGCCTAGGCCCTTGATC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
*
68010367 GTGCGGGAGCCTCGGGCACCATCGACAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * **
68010410 GTGCGAGAGCCTC-GGCACCATCGGC-ACATTGGTACTTGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TC
* * ** *
68010451 GTGCGGGAGCCTCGGGCACCATCGGC-CCCTTGGTGCTTGGTT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * *
68010493 GTGCGGGAGCCTCGGGTACTATCGGCAACCTAGGCCCTTAGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * *
68010536 GTGTGGGAGCCTCGGGCATCATCGGCAACCTAGGCCATTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* *
68010579 GTGCGGGAGCCTCGGGCACCTTTGGC-ACCTTAGTG-CC-TGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACC-TAG-GCCCTTGG-TC
* * *
68010621 GTGCGGGAGCCTCGGTCACCATCAGTAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
**
68010664 GTGCTAGAGCCTCGGGCACCATC
1 GTGCGGGAGCCTCGGGCACCATC
68010687 AACACCTTGG
Statistics
Matches: 1328, Mismatches: 267, Indels: 84
0.79 0.16 0.05
Matches are distributed among these distances:
39 1 0.00
40 15 0.01
41 122 0.09
42 364 0.27
43 822 0.62
44 4 0.00
ACGTcount: A:0.18, C:0.30, G:0.31, T:0.21
Consensus pattern (43 bp):
GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
Found at i:68009531 original size:341 final size:340
Alignment explanation
Indices: 68008968--68010713 Score: 1557
Period size: 341 Copynumber: 5.1 Consensus size: 340
68008958 TCAGATGTGT
* * * *
68008968 GAGAGCCTC-GAGCAGCATTGGCACCTTAGGGCCTTGCATGTGCGGGAGCCTC-GGACACCATCG
1 GAGAGCCTCGGA-CACCATCGGCACC-TAGGCCCTTGGATGTGCGGGAGCCTCAGG-CACCATCG
* * * ** * * * * * * * * * *
68009031 GCAAACTAGGCCCTTAGTTGTCCGAGAGCCTGGGGCACCATCAGCACCCTGGTGCTTGGATATGT
63 AC-ACCTTGGTGCTTGGATGTACGAGAGCCTCGGACACCATCGGAACCTTGGTGCTTGGATGTGC
* * *** * *
68009096 GGGAGCCTTGGGCACCATCGGC-ACCTTGATGCTTGGAT-GTGCGAGATCCTC-GGCACCATCGG
127 GGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGG
* * * * * * * *
68009158 CAACCTAGGCTCTTGGTCGTACAGGAGCCTCGGGCACCATCGGTAACCCAGGCCCTTGATCGTAC
191 CAACCTAGGCCCTTGATCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGC
* *
68009223 GGGAGCCTCGGGTACCATTGGCAACCTAGGCCCTTGATCGTGCGGGAGCCTCGGGCACAATCAGG
256 GGGAGCCTCGGGCACCATTGGCAACCTAGGCCCTTGATCGTGCGGGAGCCTCGGGCACCATC-GG
* *
68009288 AACCTAGACACTTGGTCGTGC
320 AACCTAGGCCCTTGGTCGTGC
* ** * *
68009309 GAGAGCCTC-GACACCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCAGACACCATCGGCA
1 GAGAGCCTCGGACACCATCGGCACCTAGGCCCTTGGATGTGCGGGAGCCTCAGGCACCATCGACA
* * * * * * *
68009373 -CTTCGTTGCTTGGATGTGCGGGAGCCTCGGACACCATCGGCAACCTAGG-CCTTTGATCGTACG
66 CCTT-GGTGCTTGGATGTACGAGAGCCTCGGACACCATCGG-AACCTTGGTGCTTGGAT-GTGCG
* * * **
68009436 GGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCATGCGGGAACCTCGGGCACCATCGAAA
128 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
* * * *
68009501 ACCTAGGCCCTTGATCATGCGGGAGCCTCGGGCGCCATCTGCAGCCTAGGCCCTTGGTCGTAG-G
193 ACCTAGGCCCTTGATCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGT-GCG
* *** * * * * *
68009565 AGAGCCTC-GGCACCGCCGGC-ACCTTGG-ACTTGGAT-GTGCGGGAGCCTCAGACACCATCGGC
257 GGAGCCTCGGGCACCATTGGCAACCTAGGCCCTT-GATCGTGCGGGAGCCTCGGGCACCATCGGA
* ** *
68009626 ACCTTGGTGCTTAGAT-GTGC
321 ACCTAGGCCCTT-GGTCGTGC
* * ** * * * *
68009646 GTGAGCCTCGGACACCATCGGCAACCTAGACCCTTGTTTGTGTGAGAGCCAC-GGCACCATCAAC
1 GAGAGCCTCGGACACCATCGGC-ACCTAGGCCCTTGGATGTGCGGGAGCCTCAGGCACCATCGAC
* ** * *
68009710 ACCTTGGTGCTTAGATGTACGAGTTCCTCAGACACCATCGGAACCTTGGTGCTTGGATATGCGGG
65 ACCTTGGTGCTTGGATGTACGAGAGCCTCGGACACCATCGGAACCTTGGTGCTTGGATGTGCGGG
* *
68009775 AGCCTTGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCAGGCACCATCGGCAAC
130 AGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAC
* * *
68009840 TTAGGCCCTTGATCGTGCGGGAGCCTCGGGTACCATCGGCAACCTAGGCCCTTGGTCGTGTGGGA
195 CTAGGCCCTTGATCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGA
* * * * * * * * * *
68009905 GCCTTGAGCACCATTGGCAACCTAGGCCATTGCTCCTGTGGGAACCTCGAGCACCATTGGTAATC
260 GCCTCGGGCACCATTGGCAACCTAGGCCCTTGATCGTGCGGGAGCCTCGGGCACCATCGG-AACC
* * * * *
68009970 TAGGTCGTTGATTGTGT
324 TAGGCCCTTGGTCGTGC
* * * * *
68009987 GGGGGCCTCGGGCACCATCGGCAACC-AGGGCCTTTGG-TCGTGCGAGAGCCT-AGGCACCATCG
1 GAGAGCCTCGGACACCATCGGC-ACCTA-GGCCCTTGGAT-GTGCGGGAGCCTCAGGCACCATCG
** * * *
68010049 GTACCTTGGTGCTTGGATGTACGGGAGCCTCGTACACCATCGGTACCTTGGTGCTTGGATGTGCG
63 ACACCTTGGTGCTTGGATGTACGAGAGCCTCGGACACCATCGGAACCTTGGTGCTTGGATGTGCG
* * * *
68010114 GAAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTTGGGCACCATCGACA
128 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
* * * * *
68010179 ACCTAGGCCCTTGGTCGTGTGGAAGCCTTGGGCACCATCGGCAACCTAGGCCCTTGATCGTGCGG
193 ACCTAGGCCCTTGATCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGG
* ** ** * * * **
68010244 GATCCTCTAGCACCATCAGTAACCTAGGCCCTTGGTCATGCGGGAGCCTTAGGCACCATCGGTAA
258 GAGCCTCGGGCACCATTGGCAACCTAGGCCCTTGATCGTGCGGGAGCCTCGGGCACCATCGG-AA
*
68010309 CCTAGGCCCTTGGTTGTGC
322 CCTAGGCCCTTGGTCGTGC
* * *
68010328 GGGAGCCTC-GAGCACCATCGGTAGCCTAGGCCCTT-GATCGTGCGGGAGCCTCGGGCACCATCG
1 GAGAGCCTCGGA-CACCATCGGCA-CCTAGGCCCTTGGAT-GTGCGGGAGCCTCAGGCACCATCG
* ** * * * *
68010391 ACAACCTAGGCCCTTGG-TCGTGCGAGAGCCTCGG-CACCATCGGCACATTGGTACTTGGATGTG
63 AC-ACCTTGGTGCTTGGAT-GTACGAGAGCCTCGGACACCATCGGAACCTTGGTGCTTGGATGTG
* * ** * * *
68010454 CGGGAGCCTCGGGCACCATCGGC-CCCTTGGTGCTTGGTTGTGCGGGAGCCTCGGGTACTATCGG
126 CGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGG
* * *
68010518 CAACCTAGGCCCTT-AGTCGTGTGGGAGCCTCGGGCATCATCGGCAACCTAGGCCATTGGTCGTG
191 CAACCTAGGCCCTTGA-TCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTG
* * *
68010582 CGGGAGCCTCGGGCACCTTTGGC-ACCTTAGTG-CCTGGAT-GTGCGGGAGCCTCGGTCACCATC
255 CGGGAGCCTCGGGCACCATTGGCAACC-TAG-GCCCTTGATCGTGCGGGAGCCTCGGGCACCATC
*
68010644 AGTAACCTAGGCCCTTGGTCGTGC
318 -GGAACCTAGGCCCTTGGTCGTGC
* * ** * * *
68010668 TAGAGCCTCGGGCACCATCAACACCTTGGTACCTCGGATGTGCGGG
1 GAGAGCCTCGGACACCATCGGCACCTAGG-CCCTTGGATGTGCGGG
68010714 CTAAAGAAAA
Statistics
Matches: 1130, Mismatches: 237, Indels: 77
0.78 0.16 0.05
Matches are distributed among these distances:
336 1 0.00
337 154 0.14
338 123 0.11
339 104 0.09
340 135 0.12
341 530 0.47
342 60 0.05
343 23 0.02
ACGTcount: A:0.18, C:0.30, G:0.31, T:0.21
Consensus pattern (340 bp):
GAGAGCCTCGGACACCATCGGCACCTAGGCCCTTGGATGTGCGGGAGCCTCAGGCACCATCGACA
CCTTGGTGCTTGGATGTACGAGAGCCTCGGACACCATCGGAACCTTGGTGCTTGGATGTGCGGGA
GCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
TAGGCCCTTGATCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAG
CCTCGGGCACCATTGGCAACCTAGGCCCTTGATCGTGCGGGAGCCTCGGGCACCATCGGAACCTA
GGCCCTTGGTCGTGC
Found at i:68010800 original size:24 final size:22
Alignment explanation
Indices: 68010768--68010815 Score: 78
Period size: 24 Copynumber: 2.1 Consensus size: 22
68010758 TAGCCTGTTA
68010768 GTCGCCTGGTAGCCTGGTAGCAGC
1 GTCGCCTGGTAG-C-GGTAGCAGC
68010792 GTCGCCTGGTAGCGGTAGCAGC
1 GTCGCCTGGTAGCGGTAGCAGC
68010814 GT
1 GT
68010816 TTTGGTTTTC
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
22 11 0.46
23 1 0.04
24 12 0.50
ACGTcount: A:0.12, C:0.27, G:0.40, T:0.21
Consensus pattern (22 bp):
GTCGCCTGGTAGCGGTAGCAGC
Found at i:68033343 original size:58 final size:59
Alignment explanation
Indices: 68033267--68033381 Score: 153
Period size: 58 Copynumber: 2.0 Consensus size: 59
68033257 TCTTTCCCCA
* * *
68033267 ATCCCAAAAGGTAGAATTCAGATA-TCGTTACATGTTCGGTACCCAATAATGAGTGAACC
1 ATCCCAAAAGGTAGAATTCAGATACT-ATTACATGTTCGGTACCCAACAATGAATGAACC
* * *
68033326 ATCCC-AAAGGTAGAATTCGGATACTATTGCATGTTCGGTGCCCAACAATGAATGAA
1 ATCCCAAAAGGTAGAATTCAGATACTATTACATGTTCGGTACCCAACAATGAATGAA
68033382 TCGTCCCTGT
Statistics
Matches: 49, Mismatches: 6, Indels: 3
0.84 0.10 0.05
Matches are distributed among these distances:
58 43 0.88
59 6 0.12
ACGTcount: A:0.35, C:0.20, G:0.20, T:0.25
Consensus pattern (59 bp):
ATCCCAAAAGGTAGAATTCAGATACTATTACATGTTCGGTACCCAACAATGAATGAACC
Found at i:68037419 original size:35 final size:35
Alignment explanation
Indices: 68037380--68037451 Score: 99
Period size: 35 Copynumber: 2.1 Consensus size: 35
68037370 CATCTCCGAA
* *
68037380 GCTTGGTAAATATGGAAAGTAATCTTCAAAGATAT
1 GCTTGGCAAATATGGAAAGGAATCTTCAAAGATAT
* * *
68037415 GCTTGGCAAATATGGAAGGGGATCTTTAAAGATAT
1 GCTTGGCAAATATGGAAAGGAATCTTCAAAGATAT
68037450 GC
1 GC
68037452 GATCCTAGAC
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
35 32 1.00
ACGTcount: A:0.36, C:0.10, G:0.25, T:0.29
Consensus pattern (35 bp):
GCTTGGCAAATATGGAAAGGAATCTTCAAAGATAT
Found at i:68037968 original size:43 final size:43
Alignment explanation
Indices: 68037921--68038784 Score: 742
Period size: 43 Copynumber: 20.3 Consensus size: 43
68037911 CAGAGATGTT
* * * * * *
68037921 CGGGAGCCTCAGACACTATCGGCAAACTAGGCCCTTAGTTGTA
1 CGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTG
* * * ** * *
68037964 CGGGAGCCTCGGGCACCATCAGC-ACCTTGGTGCTAGGAT-ATG
1 CGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGG-TCGTG
* * * * ** *
68038006 CGGGAGCCTCGGGCACCATTGG-AAACTTGGTACTTGG-CTGTA
1 CGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTC-GTG
* *
68038048 CGAGAGCCTCGG-CACCATCGGCAACCTAGGCCCTTAGTCGTG
1 CGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTG
** * * *
68038090 CATGAGCCTC-GAGCACCATCGGTAACCTAGACCCTTGGTTGTG
1 CGGGAGCCTCGGA-CACCATCGGCAACCTAGGCCCTTGGTCGTG
* * * **
68038133 CTGGAGCCCCGGGCACCATCGGCAACCTAGGCCCTTAATCGTG
1 CGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTG
* * * * * *
68038176 TGGGAGTCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCCTA
1 CGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTG
*
68038219 CGGGAGCCTCGG-CACCATCGGCAACTTAGGCCCTTGGTCGTG
1 CGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTG
* * *
68038261 CGAGAGCCTCAG-CACCATCGGTAACCTAGGCCCTTGGTCGTG
1 CGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTG
* *
68038303 CGGGAGCCTCGGCCACCATCGGTAACCTAGGCCCTTGGAT-GTG
1 CGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGG-TCGTG
* * * *
68038346 CGGGAGCCTCAGACTCCACCAGCAACCTAGGCCCTTGGAT-GTG
1 CGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGG-TCGTG
* * * *
68038389 CAGAAGCCTCAGACACCATCGGCAACCTAGGTCCTTGGTCGTG
1 CGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTG
* * * ** *
68038432 CGGGAGCCTC-GAGCACCATCGG-TACTTTGGTGCTTAGAT-GTG
1 CGGGAGCCTCGGA-CACCATCGGCAACCTAGGCCCTT-GGTCGTG
* * **
68038474 CGGGAGCCTCGGACACTATCGGC-ACCTTGGTGCTTGGAT-GTG
1 CGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGG-TCGTG
* * * *
68038516 CGGAAGCCTCGGACAACATCGACAACCTAGGCCCTTGGTCATG
1 CGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTG
** * **
68038559 TAGGAGCCTC-GAGCACCATCGGC-ACCTTGGTGCTTGGAT-GTG
1 CGGGAGCCTCGGA-CACCATCGGCAACCTAGGCCCTTGG-TCGTG
*
68038601 CGGGAGCCTCGAACACCATCGGCAACCTAGGCCCTTGGTCGTG
1 CGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTG
** *
68038644 CGGGAGTTTC-GAGCACCATCGGCAACCTAGGCCCTTGGTCATG
1 CGGGAGCCTCGGA-CACCATCGGCAACCTAGGCCCTTGGTCGTG
*
68038687 CGGGAGCCTCAGG-CACAATCGGCAACCTAGGCCCTTGGTCGTG
1 CGGGAGCCTC-GGACACCATCGGCAACCTAGGCCCTTGGTCGTG
* * * * *
68038730 CGAGAGGCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCGTA
1 CGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTG
*
68038773 CGAGAGCCTCGG
1 CGGGAGCCTCGG
68038785 TACTATCGAC
Statistics
Matches: 671, Mismatches: 122, Indels: 56
0.79 0.14 0.07
Matches are distributed among these distances:
41 10 0.01
42 251 0.37
43 407 0.61
44 2 0.00
45 1 0.00
ACGTcount: A:0.19, C:0.31, G:0.30, T:0.20
Consensus pattern (43 bp):
CGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTG
Found at i:68038158 original size:86 final size:86
Alignment explanation
Indices: 68037921--68038783 Score: 774
Period size: 85 Copynumber: 10.1 Consensus size: 86
68037911 CAGAGATGTT
* * * * * *
68037921 CGGGAGCCTC-AGACACTATCGGCAAACTAGGCCCTTAGTTGTACGGGAGCCTCGGGCACCATCA
1 CGGGAGCCTCGAG-CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCG
* ** * *
68037985 GC-ACCTTGGTGCTAGGAT-ATG
65 GCAACCTAGGCCCTTGG-TCGTG
* * * * ** * *
68038006 CGGGAGCCTCGGGCACCATTGG-AAACTTGGTACTTGG-CTGTACGAGAGCCTC-GGCACCATCG
1 CGGGAGCCTCGAGCACCATCGGCAACCTAGGCCCTTGGTC-GTGCGGGAGCCTCGGGCACCATCG
*
68038068 GCAACCTAGGCCCTTAGTCGTG
65 GCAACCTAGGCCCTTGGTCGTG
** * * * * *
68038090 CATGAGCCTCGAGCACCATCGGTAACCTAGACCCTTGGTTGTGCTGGAGCCCCGGGCACCATCGG
1 CGGGAGCCTCGAGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGG
**
68038155 CAACCTAGGCCCTTAATCGTG
66 CAACCTAGGCCCTTGGTCGTG
* * * * * *
68038176 TGGGAGTCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCCTACGGGAGCCTC-GGCACCATCGG
1 CGGGAGCCTCGAGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGG
*
68038240 CAACTTAGGCCCTTGGTCGTG
66 CAACCTAGGCCCTTGGTCGTG
* * *
68038261 CGAGAGCCTC-AGCACCATCGGTAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGG
1 CGGGAGCCTCGAGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGG
*
68038325 TAACCTAGGCCCTTGGAT-GTG
66 CAACCTAGGCCCTTGG-TCGTG
* * * * * * *
68038346 CGGGAGCCTC-AGACTCCACCAGCAACCTAGGCCCTTGGAT-GTGCAGAAGCCTCAGACACCATC
1 CGGGAGCCTCGAG-CACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATC
*
68038409 GGCAACCTAGGTCCTTGGTCGTG
64 GGCAACCTAGGCCCTTGGTCGTG
* * * ** * * *
68038432 CGGGAGCCTCGAGCACCATCGG-TACTTTGGTGCTTAGAT-GTGCGGGAGCCTCGGACACTATCG
1 CGGGAGCCTCGAGCACCATCGGCAACCTAGGCCCTT-GGTCGTGCGGGAGCCTCGGGCACCATCG
* **
68038495 GC-ACCTTGGTGCTTGGAT-GTG
65 GCAACCTAGGCCCTTGG-TCGTG
* * * * ** *
68038516 CGGAAGCCTCG-GACAACATCGACAACCTAGGCCCTTGGTCATGTAGGAGCCTCGAGCACCATCG
1 CGGGAGCCTCGAG-CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCG
* **
68038580 GC-ACCTTGGTGCTTGGAT-GTG
65 GCAACCTAGGCCCTTGG-TCGTG
* ** *
68038601 CGGGAGCCTCGAACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGTTTCGAGCACCATCGG
1 CGGGAGCCTCGAGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGG
*
68038666 CAACCTAGGCCCTTGGTCATG
66 CAACCTAGGCCCTTGGTCGTG
* * *
68038687 CGGGAGCCTC-AGGCACAATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGGCTCGGGCACCATCG
1 CGGGAGCCTCGA-GCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCG
* *
68038751 GTAACCTAGGCCCTTGGTCGTA
65 GCAACCTAGGCCCTTGGTCGTG
*
68038773 CGAGAGCCTCG
1 CGGGAGCCTCG
68038784 GTACTATCGA
Statistics
Matches: 637, Mismatches: 118, Indels: 44
0.80 0.15 0.06
Matches are distributed among these distances:
83 13 0.02
84 125 0.20
85 248 0.39
86 248 0.39
87 3 0.00
ACGTcount: A:0.19, C:0.31, G:0.30, T:0.20
Consensus pattern (86 bp):
CGGGAGCCTCGAGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGG
CAACCTAGGCCCTTGGTCGTG
Found at i:68038303 original size:213 final size:214
Alignment explanation
Indices: 68037923--68038768 Score: 813
Period size: 213 Copynumber: 4.0 Consensus size: 214
68037913 GAGATGTTCG
* * * * * * * * *
68037923 GGAGCCTCAGACACTATCGGCAAACTAGGCCCTTAGTTGTACGGGAGCCTCGGGCACCATCAGC-
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGATGTGCGGGAGCCTCGGACACCATCGGCA
* ** * * * * * ** *
68037987 ACCTTGGTGCTAGGAT-ATGCGGGAGCCTCGGGCACCATTGGAAACTT-GGTACTTGG-CTGTAC
66 ACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGAGCACCATCGGCAACTTAGGCCCTTGGTC-GTGC
* * *
68038049 GAGAGCCTCGGCACCATCGGCAACCTAGGCCCTTAGTCGTGCATGAGCCTC-GAGCACCATCGGT
129 GAGAGCCTCAGCACCATCGGCAACCTAGGCCCTTGGTCGTGCAGGAGCCTCGGA-CACCATCGGT
*
68038113 AACCTAGACCCTTGGTTGTGCT
193 AACCTAGGCCCTTGGTTGTGCT
* * * * * *
68038135 GGAGCCCCGGGCACCATCGGCAACCTAGGCCCTT-AATCGTGTGGGAGTCTCGGGCACCATCGGT
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGAT-GTGCGGGAGCCTCGGACACCATCGGC
* *
68038199 AACCTAGGCCCTTGGTCCTACGGGAGCCTCG-GCACCATCGGCAACTTAGGCCCTTGGTCGTGCG
65 AACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGGCAACTTAGGCCCTTGGTCGTGCG
* * *
68038263 AGAGCCTCAGCACCATCGGTAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGTAA
130 AGAGCCTCAGCACCATCGGCAACCTAGGCCCTTGGTCGTGCAGGAGCCTCGGACACCATCGGTAA
* *
68038328 CCTAGGCCCTTGGATGTGCG
195 CCTAGGCCCTTGGTTGTGCT
* * * * * * * *
68038348 GGAGCCTCAGACTCCACCAGCAACCTAGGCCCTTGGATGTGCAGAAGCCTCAGACACCATCGGCA
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGATGTGCGGGAGCCTCGGACACCATCGGCA
* * * ** *
68038413 ACCTAGGTCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGG-TACTTTGGTGCTTAGAT-GTGCG
66 ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGGCAACTTAGGCCCTT-GGTCGTGCG
* * * * ** * *
68038476 GGAGCCTCGGACACTATCGGC-ACCTTGGTGCTTGGAT-GTGC-GGAAGCCTCGGACAACATCGA
130 AGAGCCTCAG-CACCATCGGCAACCTAGGCCCTTGG-TCGTGCAGG-AGCCTCGGACACCATCGG
* **
68038538 CAACCTAGGCCCTTGGTCATG-T
192 TAACCTAGGCCCTTGGTTGTGCT
* * ** *
68038560 AGGAGCCTCGAGCACCATCGGC-ACCTTGGTGCTTGGATGTGCGGGAGCCTCGAACACCATCGGC
1 -GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGATGTGCGGGAGCCTCGGACACCATCGGC
** * *
68038624 AACCTAGGCCCTTGGTCGTGCGGGAGTTTCGAGCACCATCGGCAACCTAGGCCCTTGGTCATGCG
65 AACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGGCAACTTAGGCCCTTGGTCGTGCG
* * * *
68038689 GGAGCCTCAGGCACAATCGGCAACCTAGGCCCTTGGTCGTGC-GAGAGGCTCGGGCACCATCGGT
130 AGAGCCTCA-GCACCATCGGCAACCTAGGCCCTTGGTCGTGCAG-GAGCCTCGGACACCATCGGT
68038753 AACCTAGGCCCTTGGT
193 AACCTAGGCCCTTGGT
68038769 CGTACGAGAG
Statistics
Matches: 513, Mismatches: 102, Indels: 36
0.79 0.16 0.06
Matches are distributed among these distances:
211 1 0.00
212 143 0.28
213 296 0.58
214 72 0.14
215 1 0.00
ACGTcount: A:0.19, C:0.31, G:0.30, T:0.20
Consensus pattern (214 bp):
GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGATGTGCGGGAGCCTCGGACACCATCGGCA
ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGGCAACTTAGGCCCTTGGTCGTGCGA
GAGCCTCAGCACCATCGGCAACCTAGGCCCTTGGTCGTGCAGGAGCCTCGGACACCATCGGTAAC
CTAGGCCCTTGGTTGTGCT
Found at i:68044318 original size:182 final size:183
Alignment explanation
Indices: 68043889--68044443 Score: 827
Period size: 182 Copynumber: 3.0 Consensus size: 183
68043879 GTAAGGAGTT
* * *
68043889 AGTTAAACACTTGGCCTTGCCGCCCCCTCGGGAAATATGGCACAATGGGGGCCGTGGTGGTGCGG
1 AGTTAAACACTTGGCCGTGCCGCCCCCTCAGGAAATATGGCACAACGGGGGCCGTGGTGGTGCGG
*
68043954 GTGCGAGCTCCCAACTT-TTGGTGGTCTGGGCACTTGTTCAATTTTCTGCCGTGCCGTGCCATGC
66 GTGCGAGCTCCCAA-TTGTTGGTGGTCCGGGCACTTGTTCAATTTTCTGCCGTGCCGT----T-C
*
68044018 CATGCCATACTTCATTCGGCTTCTTGTATTTTTTTTGGGCCAACAGAAAAAA-TTTCTA
125 CATGCCATACTTCATTCGGCTTCTTGTATTTCTTTTGGGCCAACAGAAAAAATTTTCTA
* * *
68044076 AGTTAAACACTTGGCCGTGCCGCCCCCTCTGGAAATATGGCACAACGGGGGCCATGGTGGTGTGG
1 AGTTAAACACTTGGCCGTGCCGCCCCCTCAGGAAATATGGCACAACGGGGGCCGTGGTGGTGCGG
68044141 GTGCGAGCTCCCAATTGTTGGTGGTCCGGGCACTTGTTCAATTTTCTGCCGTGCCGTTCCATG-C
66 GTGCGAGCTCCCAATTGTTGGTGGTCCGGGCACTTGTTCAATTTTCTGCCGTGCCGTTCCATGCC
* *
68044205 ATACTTCATTCGGCTTCTTGTATTTGTTTTGGGCCAACAAAAAAAATTTTCTA
131 ATACTTCATTCGGCTTCTTGTATTTCTTTTGGGCCAACAGAAAAAATTTTCTA
* * *
68044258 AGTTAAACACTTGGCCGTCCCGCCCCCTCAGGAAACATGGCACAACGGGGGCCGTGGTGGTGCGA
1 AGTTAAACACTTGGCCGTGCCGCCCCCTCAGGAAATATGGCACAACGGGGGCCGTGGTGGTGCGG
* * * *
68044323 GTGCGAGCTCCCAACTGTTGGTGGTCCGGGTACTTGTTCAATTTTCTGTCGTGCC-AT-CATGCC
66 GTGCGAGCTCCCAATTGTTGGTGGTCCGGGCACTTGTTCAATTTTCTGCCGTGCCGTTCCATGCC
* * *
68044386 ATATTTTATTCGACTTCTTGTATTTCTTTTGGGCCAACAGAAAAAATTTTC-A
131 ATACTTCATTCGGCTTCTTGTATTTCTTTTGGGCCAACAGAAAAAATTTTCTA
68044438 A-TTAAA
1 AGTTAAA
68044444 AATACTAAGT
Statistics
Matches: 342, Mismatches: 23, Indels: 14
0.90 0.06 0.04
Matches are distributed among these distances:
179 5 0.01
180 6 0.02
181 93 0.27
182 122 0.36
183 1 0.00
186 2 0.01
187 113 0.33
ACGTcount: A:0.20, C:0.25, G:0.25, T:0.30
Consensus pattern (183 bp):
AGTTAAACACTTGGCCGTGCCGCCCCCTCAGGAAATATGGCACAACGGGGGCCGTGGTGGTGCGG
GTGCGAGCTCCCAATTGTTGGTGGTCCGGGCACTTGTTCAATTTTCTGCCGTGCCGTTCCATGCC
ATACTTCATTCGGCTTCTTGTATTTCTTTTGGGCCAACAGAAAAAATTTTCTA
Found at i:68051467 original size:15 final size:15
Alignment explanation
Indices: 68051447--68051476 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
68051437 TGTATCGTTC
68051447 TTCGGTGGAAATGCG
1 TTCGGTGGAAATGCG
68051462 TTCGGTGGAAATGCG
1 TTCGGTGGAAATGCG
68051477 GTGCCGGTGG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.20, C:0.13, G:0.40, T:0.27
Consensus pattern (15 bp):
TTCGGTGGAAATGCG
Found at i:68051486 original size:17 final size:15
Alignment explanation
Indices: 68051449--68051487 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
68051439 TATCGTTCTT
*
68051449 CGGTGGAAATGCGTT
1 CGGTGGAAATGCGTC
68051464 CGGTGGAAATGCGGTGC
1 CGGTGGAAATGC-GT-C
68051481 CGGTGGA
1 CGGTGGA
68051488 CCTATGTGAC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 12 0.57
16 2 0.10
17 7 0.33
ACGTcount: A:0.18, C:0.15, G:0.46, T:0.21
Consensus pattern (15 bp):
CGGTGGAAATGCGTC
Found at i:68056946 original size:86 final size:86
Alignment explanation
Indices: 68056835--68057907 Score: 567
Period size: 85 Copynumber: 12.3 Consensus size: 86
68056825 GTGCTCTGAT
* * *
68056835 GTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCCTCT-GATGTGCGAGAGCCTCGAACACTA
1 GTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGCCT-TGGATGTGCGAGAGCCTCGAACACCA
* * *
68056899 TCGGTAAACTAGGCCCTTGGTT
65 TCGGCAACCTAGGCCCTTGGTC
*
68056921 GTGCAGGAGCCTCGGGCACCATCGGCACCTTGGTG-CTTGGATGTGCGAGAGCCTC--ACACCAT
1 GTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGCCTTGGATGTGCGAGAGCCTCGAACACCAT
* *
68056983 TGGCAACCTAGTCCCTTGGTC
66 CGGCAACCTAGGCCCTTGGTC
* * *
68057004 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGG-CCCTTAG-TCGTGCGAGAGCCTC-AAGCAC
1 GTGCGGGAGCCTCGGGCACCATCGGC-ACCTTGGTGCCTTGGAT-GTGCGAGAGCCTCGAA-CAC
*
68057066 CATCGGCAACCTAGGCCCTTGATC
63 CATCGGCAACCTAGGCCCTTGGTC
* * * * * *
68057090 GTGCGGGAGCCTCGGGTACCATCGGCAACCTAGG-CCCTTGGTTGTGCAAGAGCCTCG-GCACCA
1 GTGCGGGAGCCTCGGGCACCATCGGC-ACCTTGGTGCCTTGGATGTGCGAGAGCCTCGAACACCA
* * *
68057153 TCGGCAACCTAAGACCTCGGTC
65 TCGGCAACCTAGGCCCTTGGTC
*
68057175 GTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTG-CTTGGATGTGTTG-GAGCCTCGAACACCA
1 GTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGCCTTGGATGTG-CGAGAGCCTCGAACACCA
* **
68057238 TCGGC-ACCTTGGTGCTTGGAT-
65 TCGGCAACCTAGGCCCTTGG-TC
** ** * ** * * * * * **
68057259 GTGCTAGAGCCTCGGATACCATCGGTAACCAAGGAGTCTCGGACACTAT-CG-GCA-CCTTAGTG
1 GTGCGGGAGCCTCGGGCACCATCGG-CACCTTGGTGCCTTGG--A-TGTGCGAG-AGCC-TCGAA
*** * * *
68057321 CTTGGATGTGCGGGAGCCTCGGACACCATTGGTAAC
60 C-ACCA--T-CGGCAACCTAGG-C-CC-TTGGT--C
* * * * * * *
68057357 CTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCACCTTGATG-CTTGGATGTGCGGG
1 GT--G--C-GGGAGCCT-C-GG-G-CAC------CATCGGCACCTTGGTGCCTTGGATGTGCGAG
* * * * * *
68057420 AGCCTCGGACACCATCGG-TACCTTGGTGCTTTGAT-
51 AGCCTCGAACACCATCGGCAACCTAGG-CCCTTGGTC
* * * * * * * * **
68057455 GTGCGGAAACTTTGGGCACCATCGGTAACCTAGG-CCCTTGG-TCGTGCGGGAGCCTCGGGCACC
1 GTGCGGGAGCCTCGGGCACCATCGG-CACCTTGGTGCCTTGGAT-GTGCGAGAGCCTCGAACACC
68057518 ATCGGCAACCTAGGCCCTTGGTC
64 ATCGGCAACCTAGGCCCTTGGTC
* ** * * *
68057541 GTGCGGGAGCCTTGGGCACCATCGGCAACCTAAG-CCCTT-GATCGTGCGAGAGCC-CCAGGCAC
1 GTGCGGGAGCCTCGGGCACCATCGGC-ACCTTGGTGCCTTGGAT-GTGCGAGAGCCTCGA-ACAC
*
68057603 CATCGGCAACCTACGCCCTTGGTC
63 CATCGGCAACCTAGGCCCTTGGTC
* * * * * * * **
68057627 GTGCGAGAGCCTC-GGTACCATCGGCAACCTAGG-CCCTTGGTTGTGCGGGAACCTCGGGCACCA
1 GTGCGGGAGCCTCGGGCACCATCGGC-ACCTTGGTGCCTTGGATGTGCGAGAGCCTCGAACACCA
68057690 TCGGC-ACCTTAGTG--CTTGGAT-
65 TCGGCAACC-TAG-GCCCTTGG-TC
* * * * * * **
68057711 GTGCGAGAGCCTCGGACACCATTGGCACCTTGGT-ACTTGGATGTGTGGGAGCCTCGGGCACCAT
1 GTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGCCTTGGATGTGCGAGAGCCTCGAACACCAT
* *
68057775 CAGCAACCTAGGCCCTCGGTC
66 CGGCAACCTAGGCCCTTGGTC
* **
68057796 GTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTG-CTTGGATGTGCGGGAGCCTCGGGCACCAT
1 GTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGCCTTGGATGTGCGAGAGCCTCGAACACCAT
* *
68057860 CGGCAACCAAGGTCCTTGGTC
66 CGGCAACCTAGGCCCTTGGTC
*
68057881 GTGCGGGTA-CCTCGGGCACTATCGGCA
1 GTGCGGG-AGCCTCGGGCACCATCGGCA
68057908 ACCTAGGCCC
Statistics
Matches: 777, Mismatches: 140, Indels: 141
0.73 0.13 0.13
Matches are distributed among these distances:
83 49 0.06
84 144 0.19
85 287 0.37
86 205 0.26
87 5 0.01
88 5 0.01
89 3 0.00
90 2 0.00
91 2 0.00
92 5 0.01
93 6 0.01
94 3 0.00
95 2 0.00
96 5 0.01
98 2 0.00
100 1 0.00
101 4 0.01
102 4 0.01
103 8 0.01
104 5 0.01
105 1 0.00
106 1 0.00
107 3 0.00
108 7 0.01
109 3 0.00
110 4 0.01
111 5 0.01
112 6 0.01
ACGTcount: A:0.17, C:0.31, G:0.32, T:0.20
Consensus pattern (86 bp):
GTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGCCTTGGATGTGCGAGAGCCTCGAACACCAT
CGGCAACCTAGGCCCTTGGTC
Found at i:68057280 original size:42 final size:42
Alignment explanation
Indices: 68056812--68058034 Score: 362
Period size: 43 Copynumber: 28.2 Consensus size: 42
68056802 CCTCGAGTAG
* * *
68056812 CATCGGCACCTTGGTGCTCT-GATGTGCGGGAGCCTC-GAGCAG
1 CATCGGCACCTTGGTCCT-TGGATGTGCGAGAGCCTCGGA-CAC
*
68056854 CATCGGCACCTTGGTGCCTCT-GATGTGCGAGAGCCTCGAACAC
1 CATCGGCACCTTGGT-CCT-TGGATGTGCGAGAGCCTCGGACAC
* * * * * * *
68056897 TATCGGTAAACTAGGCCCTTGGTTGTGC-AGGAGCCTCGGGCAC
1 CATCGG-CACCTTGGTCCTTGGATGTGCGA-GAGCCTCGGACAC
*
68056940 CATCGGCACCTTGGTGCTTGGATGTGCGAGAGCCTC--ACAC
1 CATCGGCACCTTGGTCCTTGGATGTGCGAGAGCCTCGGACAC
* * * *
68056980 CATTGGCAACC-TAGTCCCTTGG-TCGTGCGGGAGCCTCGGGCAC
1 CATCGGC-ACCTTGGT-CCTTGGAT-GTGCGAGAGCCTCGGACAC
* * * *
68057023 CATCGGCAACCTAGGCCCTTAG-TCGTGCGAGAGCCTC-AAGCAC
1 CATCGGC-ACCTTGGTCCTTGGAT-GTGCGAGAGCCTCGGA-CAC
* * * **
68057066 CATCGGCAACCTAGGCCCTT-GATCGTGCGGGAGCCTCGGGTAC
1 CATCGGC-ACCTTGGTCCTTGGAT-GTGCGAGAGCCTCGGACAC
* * * *
68057109 CATCGGCAACCTAGGCCCTTGGTTGTGCAAGAGCCTCGG-CAC
1 CATCGGC-ACCTTGGTCCTTGGATGTGCGAGAGCCTCGGACAC
** * * * *
68057151 CATCGGCAACCTAAGACCTCGG-TCGTGCGGGAGCCTCGGGCAC
1 CATCGGC-ACCTTGGTCCTTGGAT-GTGCGAGAGCCTCGGACAC
* * *
68057194 CATCGGCACCTTGGTGCTTGGATGTGTTG-GAGCCTCGAACAC
1 CATCGGCACCTTGGTCCTTGGATGTG-CGAGAGCCTCGGACAC
* * *
68057236 CATCGGCACCTTGGTGCTTGGATGTGCTAGAGCCTCGGATAC
1 CATCGGCACCTTGGTCCTTGGATGTGCGAGAGCCTCGGACAC
* ** * * * **
68057278 CATCGGTAACCAAGGAGT-CTCGGACACTAT-CG-GCA-CCTTAGTG-CTTG
1 CATCGG-CACC-TTG-GTCCTTGG--A-TGTGCGAG-AGCC-TCG-GAC-AC
* * * * ** * *
68057325 GATGTGCGGGAGCCTCGGACACCATTGGTAACCTAG-GCCCTTG-GTCGTGCGGGA-GC
1 CA--T-CGGCA-CCTTGG--TCC-TTGG--A--T-GTG--CGAGAG-CCT-C-GGACAC
* * *
68057381 C-TCGGGCACCATCGGCACCTTGATGCTTGGATGTGCGGGAGCCTCGGACAC
1 CATC-GGCACC-TTGG-TCC-------TTGGATGTGCGAGAGCCTCGGACAC
* * * * * * *
68057432 CATCGGTACCTTGGTGCTTTGATGTGCG-GAAACTTTGGGCAC
1 CATCGGCACCTTGGTCCTTGGATGTGCGAG-AGCCTCGGACAC
* * * * *
68057474 CATCGGTAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCAC
1 CATCGG-CACCTTGGTCCTTGGAT-GTGCGAGAGCCTCGGACAC
* * * * *
68057517 CATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTTGGGCAC
1 CATCGGC-ACCTTGGTCCTTGGAT-GTGCGAGAGCCTCGGACAC
** * *
68057560 CATCGGCAACCTAAGCCCTT-GATCGTGCGAGAGCCCCAGG-CAC
1 CATCGGC-ACCTTGGTCCTTGGAT-GTGCGAGAGCCTC-GGACAC
** * *
68057603 CATCGGCAACCTACGCCCTTGG-TCGTGCGAGAGCCTCGG-TAC
1 CATCGGC-ACCTTGGTCCTTGGAT-GTGCGAGAGCCTCGGACAC
* * * * * *
68057645 CATCGGCAACCTAGGCCCTTGGTTGTGCGGGAACCTCGGGCAC
1 CATCGGC-ACCTTGGTCCTTGGATGTGCGAGAGCCTCGGACAC
* *
68057688 CATCGGCACCTTAGTGCTTGGATGTGCGAGAGCCTCGGACAC
1 CATCGGCACCTTGGTCCTTGGATGTGCGAGAGCCTCGGACAC
* * * * *
68057730 CATTGGCACCTTGGTACTTGGATGTGTGGGAGCCTCGGGCAC
1 CATCGGCACCTTGGTCCTTGGATGTGCGAGAGCCTCGGACAC
* * * * * *
68057772 CATCAGCAACCTAGGCCCTCGG-TCGTGCGGGAGCCTCGGGCAC
1 CATCGGC-ACCTTGGTCCTTGGAT-GTGCGAGAGCCTCGGACAC
* * *
68057815 CATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGGGCAC
1 CATCGGCACCTTGGTCCTTGGATGTGCGAGAGCCTCGGACAC
** * *
68057857 CATCGGCAACCAAGGTCCTTGG-TCGTGCGGGTA-CCTCGGGCAC
1 CATCGGC-ACCTTGGTCCTTGGAT-GTGCGAG-AGCCTCGGACAC
* * * * * * * *
68057900 TATCGGCAACCTAGGCCCTTGG-TCGTACGGGAGCTTTGGGCAC
1 CATCGGC-ACCTTGGTCCTTGGAT-GTGCGAGAGCCTCGGACAC
* *
68057943 CATCGGCACCTTGGTACC-TAGATGTGCGGGAGCCTCTGG-CAC
1 CATCGGCACCTTGGT-CCTTGGATGTGCGAGAGCCTC-GGACAC
* * *
68057985 CATCGGCAACCTAGGCCCTTGG-TCGTGCTG-GAGCCTCGGGCAC
1 CATCGGC-ACCTTGGTCCTTGGAT-GTGC-GAGAGCCTCGGACAC
68058028 CATCGGC
1 CATCGGC
68058035 CGATCAGTCT
Statistics
Matches: 930, Mismatches: 164, Indels: 173
0.73 0.13 0.14
Matches are distributed among these distances:
40 13 0.01
41 22 0.02
42 344 0.37
43 450 0.48
44 20 0.02
45 5 0.01
46 5 0.01
47 4 0.00
48 1 0.00
49 4 0.00
50 11 0.01
51 9 0.01
52 17 0.02
53 12 0.01
54 2 0.00
56 3 0.00
57 3 0.00
58 5 0.01
ACGTcount: A:0.17, C:0.31, G:0.32, T:0.21
Consensus pattern (42 bp):
CATCGGCACCTTGGTCCTTGGATGTGCGAGAGCCTCGGACAC
Found at i:68057349 original size:69 final size:69
Alignment explanation
Indices: 68057222--68057357 Score: 200
Period size: 69 Copynumber: 2.0 Consensus size: 69
68057212 TGGATGTGTT
* * *
68057222 GGAGCCTCGAACACCATCGGCACCTTGGTGCTTGGATGTGCTAGAGCCTCGGATACCATCGGTAA
1 GGAGCCTCGAACACCATCGGCACCTTAGTGCTTGGATGTGCGAGAGCCTCGGACACCATCGGTAA
68057287 CCAA
66 CCAA
* * * * *
68057291 GGAGTCTCGGACACTATCGGCACCTTAGTGCTTGGATGTGCGGGAGCCTCGGACACCATTGGTAA
1 GGAGCCTCGAACACCATCGGCACCTTAGTGCTTGGATGTGCGAGAGCCTCGGACACCATCGGTAA
68057356 CC
66 CC
68057358 TAGGCCCTTG
Statistics
Matches: 59, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
69 59 1.00
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.21
Consensus pattern (69 bp):
GGAGCCTCGAACACCATCGGCACCTTAGTGCTTGGATGTGCGAGAGCCTCGGACACCATCGGTAA
CCAA
Found at i:68057375 original size:43 final size:43
Alignment explanation
Indices: 68057328--68058034 Score: 744
Period size: 43 Copynumber: 16.6 Consensus size: 43
68057318 GTGCTTGGAT
* * *
68057328 GTGCGGGAGCCTCGGACACCATTGGTAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* ***
68057371 GTGCGGGAGCCTCGGGCACCATCGGC-ACCTTGATGCTTGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TC
* * * * * *
68057413 GTGCGGGAGCCTCGGACACCATCGG-TACCTTGGTGCTTTGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGG-CCCTTGGTC
* * * * *
68057455 GTGCGGAAACTTTGGGCACCATCGGTAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
68057498 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * *
68057541 GTGCGGGAGCCTTGGGCACCATCGGCAACCTAAGCCCTTGATC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * *
68057584 GTGCGAGAGCCCCAGGCACCATCGGCAACCTACGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * *
68057627 GTGCGAGAGCCTC-GGTACCATCGGCAACCTAGGCCCTTGGTT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
*
68057669 GTGCGGGAACCTCGGGCACCATCGGC-ACCTTAGTG--CTTGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACC-TAG-GCCCTTGG-TC
* * * * **
68057711 GTGCGAGAGCCTCGGACACCATTGGC-ACCTTGGTACTTGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TC
* * *
68057753 GTGTGGGAGCCTCGGGCACCATCAGCAACCTAGGCCCTCGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* **
68057796 GTGCGGGAGCCTCGGGCACCATCGGC-ACCTTGGTGCTTGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TC
* *
68057838 GTGCGGGAGCCTCGGGCACCATCGGCAACCAAGGTCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
*
68057881 GTGCGGGTA-CCTCGGGCACTATCGGCAACCTAGGCCCTTGGTC
1 GTGCGGG-AGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * * * * *
68057924 GTACGGGAGCTTTGGGCACCATCGGC-ACCTTGGTACCTAGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGG-CCCTTGGTC
*
68057966 GTGCGGGAGCCTCTGGCACCATCGGCAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
*
68058009 GTGCTGGAGCCTCGGGCACCATCGGC
1 GTGCGGGAGCCTCGGGCACCATCGGC
68058035 CGATCAGTCT
Statistics
Matches: 555, Mismatches: 88, Indels: 42
0.81 0.13 0.06
Matches are distributed among these distances:
40 1 0.00
41 2 0.00
42 236 0.43
43 314 0.57
44 2 0.00
ACGTcount: A:0.16, C:0.31, G:0.33, T:0.20
Consensus pattern (43 bp):
GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
Found at i:68057657 original size:128 final size:127
Alignment explanation
Indices: 68057291--68058034 Score: 858
Period size: 128 Copynumber: 5.8 Consensus size: 127
68057281 CGGTAACCAA
* * * * * * *
68057291 GGAGTCTCGGACACTATCGGCACCTTAGTGCTTGGATGTGCGGGAGCCTCGGACACCATTGGTAA
1 GGAGCCTCGGGCACCATCGGCACCTTAGTCCTTGGATGTGCGAGAGCCTCGG-CACCATCGGCAA
* ***
68057356 CCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTTGATGCTTGGAT-GTGCG
65 CCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCG
* * * * * * * * *
68057418 GGAGCCTCGGACACCATCGGTACCTTGGTGCTTTGATGTGCG-GAAACTTTGGGCACCATCGGTA
1 GGAGCCTCGGGCACCATCGGCACCTTAGTCCTTGGATGTGCGAG-AGC-CTCGGCACCATCGGCA
68057482 ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCG
64 ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* * * *
68057546 GGAGCCTTGGGCACCATCGGCAACCTAAGCCCTT-GATCGTGCGAGAGCCCCAGGCACCATCGGC
1 GGAGCCTCGGGCACCATCGGC-ACCTTAGTCCTTGGAT-GTGCGAGAGCCTC-GGCACCATCGGC
* * * *
68057610 AACCTACGCCCTTGGTCGTGCGAGAGCCTC-GGTACCATCGGCAACCTAGGCCCTTGGTTGTGCG
63 AACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* * *
68057674 GGAACCTCGGGCACCATCGGCACCTTAGTGCTTGGATGTGCGAGAGCCTCGGACACCATTGGC-A
1 GGAGCCTCGGGCACCATCGGCACCTTAGTCCTTGGATGTGCGAGAGCCTCGG-CACCATCGGCAA
* ** * * *
68057738 CCTTGGTACTTGGAT-GTGTGGGAGCCTCGGGCACCATCAGCAACCTAGGCCCTCGGTCGTGCG
65 CCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* * *
68057801 GGAGCCTCGGGCACCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGGGCACCATCGGCAA
1 GGAGCCTCGGGCACCATCGGCACCTTAGTCCTTGGATGTGCGAGAGCCTC-GGCACCATCGGCAA
* * * *
68057866 CCAAGGTCCTTGGTCGTGCGGGTA-CCTCGGGCACTATCGGCAACCTAGGCCCTTGGTCGTACG
65 CCTAGGCCCTTGGTCGTGCGGG-AGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* * * * *
68057929 GGAGCTTTGGGCACCATCGGCACCTTGGTACC-TAGATGTGCGGGAGCCTCTGGCACCATCGGCA
1 GGAGCCTCGGGCACCATCGGCACCTTAGT-CCTTGGATGTGCGAGAGCCTC-GGCACCATCGGCA
*
68057993 ACCTAGGCCCTTGGTCGTGCTGGAGCCTCGGGCACCATCGGC
64 ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC
68058035 CGATCAGTCT
Statistics
Matches: 532, Mismatches: 67, Indels: 35
0.84 0.11 0.06
Matches are distributed among these distances:
126 24 0.05
127 211 0.40
128 240 0.45
129 56 0.11
130 1 0.00
ACGTcount: A:0.16, C:0.31, G:0.33, T:0.20
Consensus pattern (127 bp):
GGAGCCTCGGGCACCATCGGCACCTTAGTCCTTGGATGTGCGAGAGCCTCGGCACCATCGGCAAC
CTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCG
Found at i:68058034 original size:85 final size:87
Alignment explanation
Indices: 68057328--68058034 Score: 736
Period size: 85 Copynumber: 8.3 Consensus size: 87
68057318 GTGCTTGGAT
* * *
68057328 GTGCGGGAGCCTCGGACACCATTGGTAACCTAGG-CCCTTGGTCGTGCGGGAGCCTCGGGCACCA
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTCCCTTGGTCGTGCGGGAGCCTCGGGCACCA
* ***
68057392 TCGGC-ACCTTGATGCTTGGAT-
66 TCGGCAACCTAGGCCCTTGG-TC
* * * * * * * * * *
68057413 GTGCGGGAGCCTCGGACACCATCGG-TACCTTGGTGCTTTGAT-GTGCGGAAACTTTGGGCACCA
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTCCCTTGGTCGTGCGGGAGCCTCGGGCACCA
*
68057476 TCGGTAACCTAGGCCCTTGGTC
66 TCGGCAACCTAGGCCCTTGGTC
*
68057498 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGG-CCCTTGGTCGTGCGGGAGCCTTGGGCACCA
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTCCCTTGGTCGTGCGGGAGCCTCGGGCACCA
* *
68057562 TCGGCAACCTAAGCCCTTGATC
66 TCGGCAACCTAGGCCCTTGGTC
* * * * * *
68057584 GTGCGAGAGCCCCAGGCACCATCGGCAACCTACG-CCCTTGGTCGTGCGAGAGCCTC-GGTACCA
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTCCCTTGGTCGTGCGGGAGCCTCGGGCACCA
*
68057647 TCGGCAACCTAGGCCCTTGGTT
66 TCGGCAACCTAGGCCCTTGGTC
* * * *
68057669 GTGCGGGAACCTCGGGCACCATCGGC-ACCTTA-GT-GCTTGGAT-GTGCGAGAGCCTCGGACAC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACC-TAGGTCCCTTGG-TCGTGCGGGAGCCTCGGGCAC
* * **
68057730 CATTGGC-ACCTTGGTACTTGGAT-
64 CATCGGCAACCTAGGCCCTTGG-TC
* * *
68057753 GTGTGGGAGCCTCGGGCACCATCAGCAACCTAGG-CCCTCGGTCGTGCGGGAGCCTCGGGCACCA
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTCCCTTGGTCGTGCGGGAGCCTCGGGCACCA
* **
68057817 TCGGC-ACCTTGGTGCTTGGAT-
66 TCGGCAACCTAGGCCCTTGG-TC
* *
68057838 GTGCGGGAGCCTCGGGCACCATCGGCAACCAAGGT-CCTTGGTCGTGCGGGTA-CCTCGGGCACT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTCCCTTGGTCGTGCGGG-AGCCTCGGGCACC
68057901 ATCGGCAACCTAGGCCCTTGGTC
65 ATCGGCAACCTAGGCCCTTGGTC
* * * * * * * *
68057924 GTACGGGAGCTTTGGGCACCATCGGC-ACCTTGGTACCTAGAT-GTGCGGGAGCCTCTGGCACCA
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTCCCTTGGTCGTGCGGGAGCCTCGGGCACCA
68057987 TCGGCAACCTAGGCCCTTGGTC
66 TCGGCAACCTAGGCCCTTGGTC
*
68058009 GTGCTGGAGCCTCGGGCACCATCGGC
1 GTGCGGGAGCCTCGGGCACCATCGGC
68058035 CGATCAGTCT
Statistics
Matches: 524, Mismatches: 78, Indels: 40
0.82 0.12 0.06
Matches are distributed among these distances:
84 88 0.17
85 303 0.58
86 133 0.25
ACGTcount: A:0.16, C:0.31, G:0.33, T:0.20
Consensus pattern (87 bp):
GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTCCCTTGGTCGTGCGGGAGCCTCGGGCACCA
TCGGCAACCTAGGCCCTTGGTC
Found at i:68061691 original size:43 final size:43
Alignment explanation
Indices: 68061622--68062202 Score: 495
Period size: 43 Copynumber: 13.7 Consensus size: 43
68061612 GTATTTAATA
* *
68061622 GAGCCTC-GGCACCATCTGCAACCTAGGCCCTTGGTCGTACGG
1 GAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGG
* * *
68061664 GAGCCTCGGACACTATCGACAACCTAGGCCCTTGGAT-GTGCGG
1 GAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGG
* * *
68061707 GAGCCTCGGACACCATCGGCAATCTAGGCCCTTGGAT-ATGCGG
1 GAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGG
* * *
68061750 AAGCCTCGGACACCATTGGCAACCTAGG-CCTTGGTCGTGCGG
1 GAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGG
* * *
68061792 GAGCCTCAGACACCATCGG-TACCTA-GCCC-TGGTCGTGCGG
1 GAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGG
* * * * * * *
68061832 GAGCCTTGGGCACCATCGGTACTACCTTTGTGCAACTAGGCCCTGGTGTGG
1 GAGCCTCGGGCACCATCGG--CAACC-TAG-GC-CCTTGG---TCGTGCGG
68061883 GAGCCTCGGGCACCATCGGC-A-CTAGG-CCTTGGTCGTGCGG
1 GAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGG
* * * * * *
68061923 GAGCCTTGGGCACCATCAGCAACATAGGCCCCTGATCGTACGG
1 GAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGG
* * *
68061966 GAGCCTCGGGC-CCATC-GC-ACTTCGTG--CTTGGAT-GTACGG
1 GAGCCTCGGGCACCATCGGCAACCTAG-GCCCTTGG-TCGTGCGG
*
68062005 GAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGG
1 GAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGG
* *
68062048 GAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCATGCGG
1 GAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGG
*
68062091 GAGCCTCGGGCACCATCGGC-ACCTA-GCTGCCTCGGAT-GTGCGG
1 GAGCCTCGGGCACCATCGGCAACCTAGGC--CCTTGG-TCGTGCGG
* * * * *
68062134 GAGCCTCGAGCAGCATTGGC-ACCTTGG-TCTTGGAT-GTGCGG
1 GAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGG
* *
68062175 GAGCCTCGGACACCATAGGCAACCTAGG
1 GAGCCTCGGGCACCATCGGCAACCTAGG
68062203 ACGTTGGATA
Statistics
Matches: 445, Mismatches: 63, Indels: 62
0.78 0.11 0.11
Matches are distributed among these distances:
39 19 0.04
40 62 0.14
41 45 0.10
42 59 0.13
43 221 0.50
44 4 0.01
45 1 0.00
46 4 0.01
47 2 0.00
48 3 0.01
49 1 0.00
51 24 0.05
ACGTcount: A:0.18, C:0.32, G:0.32, T:0.19
Consensus pattern (43 bp):
GAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGG
Found at i:68062006 original size:82 final size:82
Alignment explanation
Indices: 68061881--68062190 Score: 245
Period size: 82 Copynumber: 3.7 Consensus size: 82
68061871 GCCCTGGTGT
* * *
68061881 GGGAGCCTCGGGCACCATCGGCACTAGGCCTTGGTCGTGCGGGAGCCTTGGGCACCATCAGCAAC
1 GGGAGCCTCGGGCACCATC-GCACTAGGCCTTGGTCGTACGGGAGCCTCGGACACCATCAGCAAC
68061946 ATAGGCCCCTGATCGTAC
65 ATAGGCCCCTGATCGTAC
* *
68061964 GGGAGCCTCGGGC-CCATCGCACTTCGTG-CTTGGAT-GTACGGGAGCCTCGGACACCATCGGCA
1 GGGAGCCTCGGGCACCATCGCAC-TAG-GCCTTGG-TCGTACGGGAGCCTCGGACACCATCAGCA
* * * *
68062026 ACCTAGGCCCTTGGTCGTGC
63 ACATAGGCCCCTGATCGTAC
* * * * *
68062046 GGGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCATGCGGGAGCCTCGGGCACCATCGGC
1 GGGAGCCTCGGGCACCATC-G-CA-CTAGG-CCTTGGTCGTACGGGAGCCTCGGACACCATCAGC
* * * *
68062111 -ACCTAGCTGCCTCGGAT-GTGC
62 AACATAG--GCCCCTGATCGTAC
* * * * * *
68062132 GGGAGCCTCGAGCAGCATTGGCACCTTGGTCTTGGAT-GTGCGGGAGCCTCGGACACCAT
1 GGGAGCCTCGGGCACCA-TCGCA-CTAGGCCTTGG-TCGTACGGGAGCCTCGGACACCAT
68062191 AGGCAACCTA
Statistics
Matches: 187, Mismatches: 26, Indels: 27
0.78 0.11 0.11
Matches are distributed among these distances:
81 4 0.02
82 64 0.34
83 20 0.11
84 27 0.14
85 17 0.09
86 49 0.26
87 6 0.03
ACGTcount: A:0.16, C:0.32, G:0.34, T:0.18
Consensus pattern (82 bp):
GGGAGCCTCGGGCACCATCGCACTAGGCCTTGGTCGTACGGGAGCCTCGGACACCATCAGCAACA
TAGGCCCCTGATCGTAC
Found at i:68062100 original size:125 final size:127
Alignment explanation
Indices: 68061622--68062202 Score: 472
Period size: 125 Copynumber: 4.5 Consensus size: 127
68061612 GTATTTAATA
* * * * *
68061622 GAGCCTCGG-CACCATCTGCAACCTAGGCCCTTGGTCGTACGGGAGCCTCGGACACTATCGACAA
1 GAGCCTCGGACACCATCGGC-ACCTAGG-CCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAA
* * * * * * * *
68061686 CCTAGGCCCTTGGAT-GTGCGGGAGCCTCGGACACCATCGGCAATCTAG--GCCCTTGGATATGC
64 CCTAGGCCCCT-GATCATACGGGAGCCTCGGGCACCATCGGC-ACCTAGCTG-CCTCGGATGTAC
68061748 GG
126 GG
* * * * *
68061750 AAGCCTCGGACACCATTGGCAACCTAGGCCTTGGTCGTGCGGGAGCCTCAGACACCATCGG-TAC
1 GAGCCTCGGACACCATCGGC-ACCTAGGCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAC
* * * * * * *
68061814 CTA-G-CCCTGGTCGTGCGGGAGCCTTGGGCACCATCGGTACTACCTTTG-TGCAACTAGGCCCT
65 CTAGGCCCCTGATCATACGGGAGCCTCGGGCACCATCGG--C-ACC-TAGCTGC--CTCGG--AT
**
68061876 GGTGTGG
122 -GTACGG
* * * *
68061883 GAGCCTCGGGCACCATCGGCA-CTAGGCCTTGGTCGTGCGGGAGCCTTGGGCACCATCAGCAACA
1 GAGCCTCGGACACCATCGGCACCTAGGCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
* * * *
68061947 TAGGCCCCTGATCGTACGGGAGCCTCGGGC-CCATC-GCACTTCG-TG-CTTGGATGTACGG
66 TAGGCCCCTGATCATACGGGAGCCTCGGGCACCATCGGCACCTAGCTGCCTCGGATGTACGG
*
68062005 GAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGTAA
1 GAGCCTCGGACACCATCGGC-ACCTAGG-CCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAA
* * * *
68062070 CCTAGGCCCTTGGTCATGCGGGAGCCTCGGGCACCATCGGCACCTAGCTGCCTCGGATGTGCGG
64 CCTAGGCCCCTGATCATACGGGAGCCTCGGGCACCATCGGCACCTAGCTGCCTCGGATGTACGG
* * * * * *
68062134 GAGCCTC-GAGCAGCATTGGCACCTTGGTCTTGGAT-GTGCGGGAGCCTCGGACACCATAGGCAA
1 GAGCCTCGGA-CACCATCGGCACCTAGGCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAA
68062197 CCTAGG
64 CCTAGG
68062203 ACGTTGGATA
Statistics
Matches: 373, Mismatches: 57, Indels: 47
0.78 0.12 0.10
Matches are distributed among these distances:
122 23 0.06
123 2 0.01
124 7 0.02
125 90 0.24
126 6 0.02
127 50 0.13
128 55 0.15
129 45 0.12
130 5 0.01
131 34 0.09
132 7 0.02
133 27 0.07
134 22 0.06
ACGTcount: A:0.18, C:0.32, G:0.32, T:0.19
Consensus pattern (127 bp):
GAGCCTCGGACACCATCGGCACCTAGGCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACC
TAGGCCCCTGATCATACGGGAGCCTCGGGCACCATCGGCACCTAGCTGCCTCGGATGTACGG
Found at i:68062239 original size:84 final size:83
Alignment explanation
Indices: 68061992--68062245 Score: 192
Period size: 84 Copynumber: 3.0 Consensus size: 83
68061982 GCACTTCGTG
* * * *
68061992 CTTGGATGTACGGGAGCCTCGGACACCATCGGCAACCTAG-GCCCTTGG-TCGTGCGGGAGCCTC
1 CTTGGATGTGCGGGAGCCTCGGACACCATAGGC-ACCTAGCG-CCTCGGAT-ATGCGGGAGCCTC
* * ** * * *
68062055 GGGCACCATCGGTAACCTAGGCC
63 GAGCAGCAGGGGCACCCT-GG-T
* * * *
68062078 CTTGG-TCATGCGGGAGCCTCGGGCACCATCGGCACCTAGCTGCCTCGGATGTGCGGGAGCCTCG
1 CTTGGAT-GTGCGGGAGCCTCGGACACCATAGGCACCTAGC-GCCTCGGATATGCGGGAGCCTCG
** *
68062142 AGCAGCATTGGCACCTTGGT
64 AGCAGCAGGGGCACCCTGGT
* * * *
68062162 CTTGGATGTGCGGGAGCCTCGGACACCATAGGCAACCTAG-GACGTTGGATATGCGGGTGCCTTG
1 CTTGGATGTGCGGGAGCCTCGGACACCATAGGC-ACCTAGCG-CCTCGGATATGCGGGAGCCTCG
*
68062226 AGCAGTAGGGGCACCCTGGT
64 AGCAGCAGGGGCACCCTGGT
68062246 GCCTCGGATG
Statistics
Matches: 138, Mismatches: 23, Indels: 16
0.78 0.13 0.09
Matches are distributed among these distances:
83 1 0.01
84 61 0.44
85 16 0.12
86 58 0.42
87 2 0.01
ACGTcount: A:0.17, C:0.29, G:0.35, T:0.19
Consensus pattern (83 bp):
CTTGGATGTGCGGGAGCCTCGGACACCATAGGCACCTAGCGCCTCGGATATGCGGGAGCCTCGAG
CAGCAGGGGCACCCTGGT
Found at i:68076343 original size:42 final size:42
Alignment explanation
Indices: 68076297--68076521 Score: 185
Period size: 42 Copynumber: 5.3 Consensus size: 42
68076287 GACATCAGTG
68076297 GTGCGAGAGCCTCGCGAACATCGGCACCTTGGTGCCTTGGAT
1 GTGCGAGAGCCTCGCGAACATCGGCACCTTGGTGCCTTGGAT
* *
68076339 GTGCGGGAGCCTCGCGAGCATCGGCACCTTGGTGCCTTGGAT
1 GTGCGAGAGCCTCGCGAACATCGGCACCTTGGTGCCTTGGAT
* * * * *
68076381 GTGCGGGAGCCTTG-GACACCATCGGCAAAC-TAG-GCTCTTGGTT
1 GTGCGAGAGCCTCGCGA-A-CATCGGC-ACCTTGGTGC-CTTGGAT
* * * *
68076424 GTGC-AGGAGCCTCAGTGACCATCAGCACCTTGGTG-CTCGGAT
1 GTGCGA-GAGCCTC-GCGAACATCGGCACCTTGGTGCCTTGGAT
* * * **
68076466 GTGCTG-GAGCCTTGGGCACCATCGGCACCTTGGTG-CAAGGAT
1 GTGC-GAGAGCCTCGCG-AACATCGGCACCTTGGTGCCTTGGAT
68076508 GTGCGAGAGCCTCG
1 GTGCGAGAGCCTCG
68076522 GCACCATTGG
Statistics
Matches: 149, Mismatches: 21, Indels: 26
0.76 0.11 0.13
Matches are distributed among these distances:
41 5 0.03
42 105 0.70
43 33 0.22
44 4 0.03
45 2 0.01
ACGTcount: A:0.16, C:0.28, G:0.35, T:0.21
Consensus pattern (42 bp):
GTGCGAGAGCCTCGCGAACATCGGCACCTTGGTGCCTTGGAT
Found at i:68076421 original size:43 final size:43
Alignment explanation
Indices: 68076270--68077339 Score: 916
Period size: 43 Copynumber: 25.1 Consensus size: 43
68076260 CAACCTAGAA
* * ** * * *
68076270 CACCATCGGCAACCTAGGACATCAGTGGTGCGAGAGCCTCGCG
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGG
* * * *
68076313 -AACATCGGC-ACCTTGGTGCCTTGGAT-GTGCGGGAGCCTCGCG
1 CACCATCGGCAACCTAGG-CCCTTGG-TCGTGCGGGAGCCTCGGG
* * * * *
68076355 -AGCATCGGC-ACCTTGGTGCCTTGGAT-GTGCGGGAGCCTTGGA
1 CACCATCGGCAACCTAGG-CCCTTGG-TCGTGCGGGAGCCTCGGG
* * * * *
68076397 CACCATCGGCAAACTAGGCTCTTGGTTGTGCAGGAGCCTCAGTG
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTC-GGG
* * ** * * *
68076441 -ACCATCAGC-ACCTTGGTGCTCGGAT-GTGCTGGAGCCTTGGG
1 CACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGG
* ** ** *
68076482 CACCATCGGC-ACCTTGGTGCAAGGAT-GTGCGAGAGCCTC-GG
1 CACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGG
* *
68076523 CACCATTGGCAACCTAGGACCTTGGTCGTGCGGGAGCCTCGGG
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGG
* *
68076566 CACCATCGGTAACCTAGGCCCTTGGTCGTACGGGAGCCTCGGG
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGG
*
68076609 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTC-GG
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGG
** *
68076651 CACCATCCTCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGA
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGG
* *
68076694 CACCATCGACAACCTAGGCCCTTGGTCGTACGGGAGCCTCGGG
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGG
* * * ** * **
68076737 CACCATCAG-TACCTTGGCGTTTGGAT-GTGCGAGAGCCTCGAA
1 CACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGG
* * * * *
68076779 AACTATCGGCAACCTAGGCCCTTGGAT-GTGCGGAAGCCTCAGA
1 CACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGG
**
68076822 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAA
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGG
68076865 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTC-GG
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGG
* * * **
68076907 TACCATCTGCAACCTAGGCCCTTGGTTGTGCTAGAGCCTCGGG
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGG
* *
68076950 CACCATCAGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGG
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGG
* * * *
68076993 CACCATCGGTAACCTAGGCCCCTGGTCGTCCGGGATCCTCGGG
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGG
* *
68077036 CACTATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGG
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGG
* *
68077079 CACCATCGGCAACCTAGGCCCCTGGTCGTGCGAGAGCCT-GAGG
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCG-GG
** ** * *
68077122 CACCATCGGC-ACCTTCGTGCTTGGAT-GTACGGGAGCCTCGGA
1 CACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGG
* * * *
68077164 CACCATCGGTAACTTAGGCCCTTGGTCATGCGAGAGCCTCGGG
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGG
* * *
68077207 CACCATCGGC-ACCT-TGCTGCCTCGGAT-GTGCGGGAGCCTCGAG
1 CACCATCGGCAACCTAGGC--CCTTGG-TCGTGCGGGAGCCTCGGG
* * * * ** *
68077250 CAGCATTGGC-ATCTTGGTGCTTGGAT-GTGCGGGAGCCTCGGA
1 CACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGG
* * * *
68077292 CACCATAGGCAACCTAGGACATTGGAT-GTGC-GGATGCCTCGAG
1 CACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGA-GCCTCGGG
68077335 CACCA
1 CACCA
68077340 GGGGCACCCT
Statistics
Matches: 851, Mismatches: 149, Indels: 54
0.81 0.14 0.05
Matches are distributed among these distances:
41 22 0.03
42 307 0.36
43 514 0.60
44 8 0.01
ACGTcount: A:0.18, C:0.31, G:0.32, T:0.19
Consensus pattern (43 bp):
CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGG
Found at i:68076433 original size:85 final size:86
Alignment explanation
Indices: 68076270--68077339 Score: 916
Period size: 85 Copynumber: 12.6 Consensus size: 86
68076260 CAACCTAGAA
* * ** * * * * * *
68076270 CACCATCGGCAACCTAGGACATCAGTGGTGCGAGAGCCTCGCG-AACATCGGC-ACCTTGGTGCC
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGG-CCC
*
68076333 TTGGAT-GTGCGGGAGCCTCGCG
65 TTGG-TCGTGCGGGAGCCTCGGG
* * * * * * *
68076355 -AGCATCGGC-ACCTTGGTGCCTTGGAT-GTGCGGGAGCCTTGGACACCATCGGCAAACTAGGCT
1 CACCATCGGCAACCTAGG-CCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
* * *
68076417 CTTGGTTGTGCAGGAGCCTCAGTG
64 CTTGGTCGTGCGGGAGCCTC-GGG
* * ** * * * * **
68076441 -ACCATCAGC-ACCTTGGTGCTCGGAT-GTGCTGGAGCCTTGGGCACCATCGGC-ACCTTGGTGC
1 CACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCC
** *
68076502 AAGGAT-GTGCGAGAGCCTC-GG
65 TTGG-TCGTGCGGGAGCCTCGGG
* * *
68076523 CACCATTGGCAACCTAGGACCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGTAACCTAGGCCCT
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCT
*
68076588 TGGTCGTACGGGAGCCTCGGG
66 TGGTCGTGCGGGAGCCTCGGG
* **
68076609 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTC-GGCACCATCCTCAACCTAGGCCCT
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCT
*
68076673 TGGTCGTGCGGGAGCCTCGGA
66 TGGTCGTGCGGGAGCCTCGGG
* * * * * **
68076694 CACCATCGACAACCTAGGCCCTTGGTCGTACGGGAGCCTCGGGCACCATCAG-TACCTTGGCGTT
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCT
* **
68076758 TGGAT-GTGCGAGAGCCTCGAA
66 TGG-TCGTGCGGGAGCCTCGGG
* * * * *
68076779 AACTATCGGCAACCTAGGCCCTTGGAT-GTGCGGAAGCCTCAGACACCATCGGCAACCTAGGCCC
1 CACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCC
**
68076843 TTGGTCGTGCGGGAGCCTCGAA
65 TTGGTCGTGCGGGAGCCTCGGG
* *
68076865 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTC-GGTACCATCTGCAACCTAGGCCCT
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCT
* **
68076929 TGGTTGTGCTAGAGCCTCGGG
66 TGGTCGTGCGGGAGCCTCGGG
* * * *
68076950 CACCATCAGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGTAACCTAGGCCCC
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCT
* *
68077015 TGGTCGTCCGGGATCCTCGGG
66 TGGTCGTGCGGGAGCCTCGGG
* * *
68077036 CACTATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCC
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCT
*
68077101 TGGTCGTGCGAGAGCCT-GAGG
66 TGGTCGTGCGGGAGCCTCG-GG
** ** * * * *
68077122 CACCATCGGC-ACCTTCGTGCTTGGAT-GTACGGGAGCCTCGGACACCATCGGTAACTTAGGCCC
1 CACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCC
* *
68077185 TTGGTCATGCGAGAGCCTCGGG
65 TTGGTCGTGCGGGAGCCTCGGG
* * * * * * * *
68077207 CACCATCGGC-ACCT-TGCTGCCTCGGAT-GTGCGGGAGCCTCGAGCAGCATTGGC-ATCTTGGT
1 CACCATCGGCAACCTAGGC--CCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGC
* *
68077268 GCTTGGAT-GTGCGGGAGCCTCGGA
63 CCTTGG-TCGTGCGGGAGCCTCGGG
* * * *
68077292 CACCATAGGCAACCTAGGACATTGGAT-GTGC-GGATGCCTCGAGCACCA
1 CACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGA-GCCTCGGGCACCA
68077340 GGGGCACCCT
Statistics
Matches: 811, Mismatches: 145, Indels: 58
0.80 0.14 0.06
Matches are distributed among these distances:
82 1 0.00
83 14 0.02
84 81 0.10
85 426 0.53
86 288 0.36
87 1 0.00
ACGTcount: A:0.18, C:0.31, G:0.32, T:0.19
Consensus pattern (86 bp):
CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCT
TGGTCGTGCGGGAGCCTCGGG
Found at i:68076664 original size:128 final size:128
Alignment explanation
Indices: 68076270--68077339 Score: 910
Period size: 128 Copynumber: 8.4 Consensus size: 128
68076260 CAACCTAGAA
* * ** * * * * * *
68076270 CACCATCGGCAACCTAGGACATCAGTGGTGCGAGAGCCTCGCG-AACATCGGC-ACCTTGGTGCC
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGG-CCC
* * * * * *
68076333 TTGGAT-GTGCGGGAGCCTCGCG-AGCATCGGC-ACCTTGGTGCCTTGGAT-GTGCGGGAGCCTT
65 TTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGG-CCCTTGG-TCGTGCGAGAGCCTC
68076394 GG
127 GG
* * * * * * * **
68076396 ACACCATCGGCAAACTAGGCTCTTGGTTGTGCAGGAGCCTCAGTG-ACCATCAGC-ACCTTGGTG
1 -CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTC-GGGCACCATCGGCAACCTAGGCC
* * * * ** **
68076459 CTCGGAT-GTGCTGGAGCCTTGGGCACCATCGGC-ACCTTGGTGCAAGGAT-GTGCGAGAGCCTC
64 CTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGAGAGCCTC
68076521 GG
127 GG
* * *
68076523 CACCATTGGCAACCTAGGACCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGTAACCTAGGCCCT
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCT
*
68076588 TGGTCGTACGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGG
66 TGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGG
** * *
68076651 CACCATCCTCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGACAACCTAGGCCCT
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCT
* * * * ** *
68076716 TGGTCGTACGGGAGCCTCGGGCACCATCAG-TACCTTGGCGTTTGGAT-GTGCGAGAGCCTCGAA
66 TGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGAGAGCCTCG-G
* * * * *
68076779 AACTATCGGCAACCTAGGCCCTTGGAT-GTGCGGAAGCCTCAGACACCATCGGCAACCTAGGCCC
1 CACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCC
** *
68076843 TTGGTCGTGCGGGAGCCTCGAACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
65 TTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGG
* * * ** * *
68076907 TACCATCTGCAACCTAGGCCCTTGGTTGTGCTAGAGCCTCGGGCACCATCAGCAACCTAGGCCCC
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCT
* * * * *
68076972 TGGTCGTGCGGGAGCCTCGGGCACCATCGGTAACCTAGGCCCCTGGTCGTCCGGGATCCTCGGG
66 TGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTC-GG
* * *
68077036 CACTATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCC
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCT
* ** ** * *
68077101 TGGTCGTGCGAGAGCCT-GAGGCACCATCGGC-ACCTTCGTGCTTGGAT-GTACGGGAGCCTCGG
66 TGGTCGTGCGGGAGCCTCG-GGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGAGAGCCTCGG
* * * * *
68077163 ACACCATCGGTAACTTAGGCCCTTGGTCATGCGAGAGCCTCGGGCACCATCGGC-ACCT-TGCTG
1 -CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGC--
* * * * * * ** *
68077226 CCTCGGAT-GTGCGGGAGCCTCGAGCAGCATTGGC-ATCTTGGTGCTTGGAT-GTGCGGGAGCCT
63 CCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGAGAGCCT
68077288 CGG
126 CGG
* * * *
68077291 ACACCATAGGCAACCTAGGACATTGGAT-GTGC-GGATGCCTCGAGCACCA
1 -CACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGA-GCCTCGGGCACCA
68077340 GGGGCACCCT
Statistics
Matches: 787, Mismatches: 133, Indels: 45
0.82 0.14 0.05
Matches are distributed among these distances:
125 2 0.00
126 44 0.06
127 136 0.17
128 490 0.62
129 115 0.15
ACGTcount: A:0.18, C:0.31, G:0.32, T:0.19
Consensus pattern (128 bp):
CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCT
TGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGG
Found at i:68076730 original size:171 final size:172
Alignment explanation
Indices: 68076331--68077324 Score: 906
Period size: 171 Copynumber: 5.8 Consensus size: 172
68076321 CACCTTGGTG
* * *
68076331 CCTTGGAT-GTGCGGGAGCCTC-G-CGAGCATCGGC-ACCTTGGTGCCTTGGAT-GTGCGGGAGC
1 CCTTGG-TCGTGCGGGAGCCTCGGAC-ACCATCGGCAACCTAGG-CCCTTGG-TCGTGCGGGAGC
* * * * * * *
68076391 CTTGGACACCATCGGCAAACTAGGCTCTTGGTTGTGC-AGGAGCCTCAGTG-ACCATCAGC-ACC
62 CTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGA-GAGCCTC-GGGCACCATCGGCAACC
* ** * * ** * * *
68076453 TTGGTGCTCGGATGTGCTGGAGCCTTGGGCACCATCGG-CACCTTGGT
125 TAGGCCCTTGGATGTGCGGGAGCCTCAGGCACCATCGGTAACCTAGGC
* ** * * *
68076500 GCAAGGAT-GTGCGAGAGCCTCGG-CACCATTGGCAACCTAGGACCTTGGTCGTGCGGGAGCCTC
1 CCTTGG-TCGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTC
* * *
68076563 GGGCACCATCGGTAACCTAGGCCCTTGGTCGTACGGGAGCCTCGGGCACCATCGGCAACCTAGGC
65 GGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCAACCTAGGC
* *
68076628 CCTTGG-TCGTGCGAGAGCCTC-GGCACCATC-CTCAACCTAGGC
130 CCTTGGAT-GTGCGGGAGCCTCAGGCACCATCGGT-AACCTAGGC
* *
68076670 CCTTGGTCGTGCGGGAGCCTCGGACACCATCGACAACCTAGGCCCTTGGTCGTACGGGAGCCTCG
1 CCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCG
* * * ** *** *
68076735 GGCACCATCAG-TACCTTGGCGTTTGGAT-GTGCGAGAGCCTCGAAAACTATCGGCAACCTAGGC
66 GGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGAGAGCCTCGGGCACCATCGGCAACCTAGGC
* * *
68076798 CCTTGGATGTGCGGAAGCCTCAGACACCATCGGCAACCTAGGC
130 CCTTGGATGTGCGGGAGCCTCAGGCACCATCGGTAACCTAGGC
*
68076841 CCTTGGTCGTGCGGGAGCCTCGAACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTC-
1 CCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCG
* * * * *
68076905 GGTACCATCTGCAACCTAGGCCCTTGGTTGTGCTAGAGCCTCGGGCACCATCAGCAACCTAGGCC
66 GGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCAACCTAGGCC
* *
68076970 CCTGG-TCGTGCGGGAGCCTCGGGCACCATCGGTAACCTAGGC
131 CTTGGAT-GTGCGGGAGCCTCAGGCACCATCGGTAACCTAGGC
* * * * * *
68077012 CCCTGGTCGTCCGGGATCCTCGGGCACTATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCG
1 CCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCG
* ** *
68077077 GGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGAGAGCCT-GAGGCACCATCGGC-ACCTTCGT
66 GGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCG-GGCACCATCGGCAACCTAGGC
* * *
68077140 GCTTGGATGTACGGGAGCCTC-GGACACCATCGGTAACTTAGGC
130 CCTTGGATGTGCGGGAGCCTCAGG-CACCATCGGTAACCTAGGC
* * * * *
68077183 CCTTGGTCATGCGAGAGCCTCGGGCACCATCGGC-ACCT-TGCTGCCTCGGAT-GTGCGGGAGCC
1 CCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGC--CCTTGG-TCGTGCGGGAGCC
* * * * * ** * * *
68077245 TCGAGCAGCATTGGC-ATCTTGGTGCTTGGAT-GTGCGGGAGCCTCGGACACCATAGGCAACCTA
63 TCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGAGAGCCTCGGGCACCATCGGCAACCTA
* *
68077308 GGACATTGGATGTGCGG
127 GGCCCTTGGATGTGCGG
68077325 ATGCCTCGAG
Statistics
Matches: 678, Mismatches: 119, Indels: 54
0.80 0.14 0.06
Matches are distributed among these distances:
168 3 0.00
169 98 0.14
170 155 0.23
171 373 0.55
172 49 0.07
ACGTcount: A:0.17, C:0.31, G:0.32, T:0.19
Consensus pattern (172 bp):
CCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCG
GGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCAACCTAGGCC
CTTGGATGTGCGGGAGCCTCAGGCACCATCGGTAACCTAGGC
Found at i:68090267 original size:42 final size:41
Alignment explanation
Indices: 68090213--68090346 Score: 164
Period size: 42 Copynumber: 3.2 Consensus size: 41
68090203 TGGTGTCGGG
* *
68090213 CGAGGCTTCCGCATATCCAAGGGCCTAGATTGCGATGGTGTC
1 CGAGGCTCCCGCACATCCAAGGGCCTAG-TTGCGATGGTGTC
* *
68090255 CGAGGCTCCCGCACATCCAAGGGCCTAGGTGTCGATAGTGTC
1 CGAGGCTCCCGCACATCCAAGGGCCTAGTTG-CGATGGTGTC
*
68090297 CGAGGCTCCCGTACGA-CCAAGGGCCTAGGTTGCAGATGGTG-C
1 CGAGGCTCCCGCAC-ATCCAAGGGCCTA-GTTGC-GATGGTGTC
68090339 CGAGGCTC
1 CGAGGCTC
68090347 TATAAATACA
Statistics
Matches: 81, Mismatches: 7, Indels: 8
0.84 0.07 0.08
Matches are distributed among these distances:
41 2 0.02
42 69 0.85
43 10 0.12
ACGTcount: A:0.19, C:0.29, G:0.33, T:0.19
Consensus pattern (41 bp):
CGAGGCTCCCGCACATCCAAGGGCCTAGTTGCGATGGTGTC
Found at i:68093985 original size:43 final size:43
Alignment explanation
Indices: 68093924--68095123 Score: 861
Period size: 43 Copynumber: 28.6 Consensus size: 43
68093914 AGACTGATCG
*
68093924 GCCGATGGTGCCCGAGGCTCCAGCACGACCAAGGGCCTAGGTT
1 GCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTT
* * * * *
68093967 GCCGATGGTGCCAGAGGCTCCCGCAC-ATCTAGGTACCAAGG-T
1 GCCGATGGTGCCCGAGGCTCCCGCACGACCAAGG-GCCTAGGTT
* * *
68094009 GCCGATGGTGCCCAAAGCTCCCGTACGACCAAGGGCCTAGGTT
1 GCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTT
* * *
68094052 GCCGATAGTGCCCGAGG-TACCCGCACGACCAAGGACCTTGGTT
1 GCCGATGGTGCCCGAGGCT-CCCGCACGACCAAGGGCCTAGGTT
** *
68094095 GCCGATGGTGCCCGAGGCTCCCGCAC-ATCCAAGCACCAAGG-T
1 GCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTT
*
68094137 GCCGATGGTGCCCGAGGCTCCCGCACGACCGAGGGCCTAGGTT
1 GCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTT
* * ** *
68094180 GCTGATGGTGCCCGAGGCTCCCACAC-ATCCAAGTACCAAGG-T
1 GCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTT
* * *
68094222 GCCAATGGTGTCCGAGGCTCTCGCAC-ATCCAA--GCACTAAGG-T
1 GCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGC-CT-AGGTT
* *
68094264 GCCGATGGTGCCCGAGGTTCCCGCACAACCAAGGGCCTAGGTT
1 GCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTT
* * *
68094307 GCCGATGGT-ACCGAGGCTCTCGCACGACCAAGGGCGTAGGTT
1 GCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTT
* * * * *
68094349 GCCGATGGTGCCTGGGGCTCTCGCACGATCAAGGGCTTAGGTT
1 GCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTT
*
68094392 GCCGATGGTGCCCAAGGCTCCCGCACGACCAAGGGCCTAGGTT
1 GCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTT
68094435 GCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTT
1 GCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTT
* * * * * * ** *
68094478 ACCGATGGTGCCCAAAGTTTCCGCAC-ATCAAAGCACCAAGG-T
1 GCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTT
* * *** *
68094520 ACCGATGGTGTCCGAGGCTCCCGCAC-ATCCAAGCATCAAGG-T
1 GCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTT
68094562 GCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTT
1 GCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTT
* * *
68094605 ACCAATGGTGTCCGAGGCTCCCGCAC-ATCCAA--GCACTAAGG-T
1 GCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGC-CT-AGGTT
* * * * *** * *
68094647 GCCGATAGTGTCCGAGACTCCTTG-GTTACCGATGG--TA---T
1 GCCGATGGTGCCCGAGGCTCC-CGCACGACCAAGGGCCTAGGTT
* * * * * *
68094685 -CCGA--G-GCTCTA-GCACATC-CAAGCACCAAGGTGCCGATGG-T
1 GCCGATGGTGCCCGAGGCTC-CCGCACG-ACCAAGG-GCCTA-GGTT
* * * * *
68094725 GTTCGA--G-GCTCC-A-ACACATC-CAAGCACC-A------AGG-T
1 G-CCGATGGTGC-CCGAGGCTC-CCGCACG-ACCAAGGGCCTAGGTT
* * *
68094758 GCCGATGGTGCCCGAGGCTCCCGCACGACCGAGGTCTTAGGTT
1 GCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTT
** *
68094801 GCCGATGGTG-CCGAGGCTCTTGCACAACCAAGGGCCTAGGTT
1 GCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTT
* *
68094843 GCCGATGGTACCCGAGGCTCCCGCACGATCAAGGGCCTAGGTT
1 GCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTT
** * *
68094886 GCCGATGGTGCTTGAGGCTCTCGCACGACTAAGGGCCTAGGTT
1 GCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTT
*
68094929 GCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGACTAGGTT
1 GCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTT
* * * ** *
68094972 GCCAATGGTG--TGAGGCTCTCGCAC-ATCCAAGCACCAAGG-T
1 GCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTT
* * *
68095012 GCCGATGGTGCCCGAGGCTCCTGCACAACCAAGGGCCTAGTTT
1 GCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTT
* * ** * * * *
68095055 ACCGATAGTGTTCGAGGCTCTCGCAC-ATCAGAGGCACCAAGG-T
1 GCCGATGGTGCCCGAGGCTCCCGCACGACCA-AGG-GCCTAGGTT
* *
68095098 GCCGATGCTGCTCGAGGCTCCCGCAC
1 GCCGATGGTGCCCGAGGCTCCCGCAC
68095124 ATCAGAGCAC
Statistics
Matches: 929, Mismatches: 168, Indels: 120
0.76 0.14 0.10
Matches are distributed among these distances:
32 3 0.00
33 6 0.01
34 12 0.01
35 9 0.01
36 6 0.01
37 5 0.01
38 1 0.00
40 14 0.02
41 26 0.03
42 346 0.37
43 493 0.53
44 8 0.01
ACGTcount: A:0.20, C:0.32, G:0.31, T:0.17
Consensus pattern (43 bp):
GCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTT
Found at i:68094075 original size:85 final size:86
Alignment explanation
Indices: 68093924--68095123 Score: 861
Period size: 85 Copynumber: 14.3 Consensus size: 86
68093914 AGACTGATCG
* *
68093924 GCCGATGGTGCCCGAGGCTCCAGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCAGAGGCTCCC
1 GCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCC
* * *
68093989 GCAC-ATCTAGGTACCAAGG-T
66 GCACGACCAAGG-ACCTAGGTT
* * * *
68094009 GCCGATGGTGCCCAAAGCTCCCGTACGACCAAGGGCCTAGGTTGCCGATAGTGCCCGAGG-TACC
1 GCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCT-CC
*
68094073 CGCACGACCAAGGACCTTGGTT
65 CGCACGACCAAGGACCTAGGTT
** *
68094095 GCCGATGGTGCCCGAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCGATGGTGCCCGAGGCTCC
1 GCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCC
* *
68094158 CGCACGACCGAGGGCCTAGGTT
65 CGCACGACCAAGGACCTAGGTT
* * ** * * * *
68094180 GCTGATGGTGCCCGAGGCTCCCACAC-ATCCAAGTACCAAGG-TGCCAATGGTGTCCGAGGCTCT
1 GCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCC
*
68094243 CGCAC-ATCCAAGCA-CTAAGG-T
65 CGCACGA-CCAAGGACCT-AGGTT
* * * *
68094264 GCCGATGGTGCCCGAGGTTCCCGCACAACCAAGGGCCTAGGTTGCCGATGGT-ACCGAGGCTCTC
1 GCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCC
* *
68094328 GCACGACCAAGGGCGTAGGTT
66 GCACGACCAAGGACCTAGGTT
* * * * * *
68094349 GCCGATGGTGCCTGGGGCTCTCGCACGATCAAGGGCTTAGGTTGCCGATGGTGCCCAAGGCTCCC
1 GCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCC
*
68094414 GCACGACCAAGGGCCTAGGTT
66 GCACGACCAAGGACCTAGGTT
* * * * *
68094435 GCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTACCGATGGTGCCCAAAGTTTCC
1 GCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCC
* * *
68094500 GCAC-ATCAAAGCACCAAGG-T
66 GCACGA-CCAAGGACCTAGGTT
* * *** *
68094520 ACCGATGGTGTCCGAGGCTCCCGCAC-ATCCAAGCATCAAGG-TGCCGATGGTGCCCGAGGCTCC
1 GCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCC
*
68094583 CGCACGACCAAGGGCCTAGGTT
65 CGCACGACCAAGGACCTAGGTT
* * * * * *
68094605 ACCAATGGTGTCCGAGGCTCCCGCAC-ATCCAA--GCACTAAGG-TGCCGATAGTGTCCGAGACT
1 GCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGC-CT-AGGTTGCCGATGGTGCCCGAGGCT
* ***
68094666 CCTTG-GTTACC---GA--T-GGTAT
63 CC-CGCACGACCAAGGACCTAGGT-T
* * * * * * *
68094685 -CCGA--G-GCTCTA-GCACATC-CAAGCACCAAGGTGCCGATGG-TGTTCGA--G-GCTCC-A-
1 GCCGATGGTGCCCGAGGCTC-CCGCACG-ACCAAGG-GCCTA-GGTTG-CCGATGGTGC-CCGAG
* * * *
68094738 ACACATC-CAAGCACC----A---AGG-T
60 GCTC-CCGCACG-ACCAAGGACCTAGGTT
* * * **
68094758 GCCGATGGTGCCCGAGGCTCCCGCACGACCGAGGTCTTAGGTTGCCGATGGTG-CCGAGGCTCTT
1 GCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCC
* *
68094822 GCACAACCAAGGGCCTAGGTT
66 GCACGACCAAGGACCTAGGTT
* * ** *
68094843 GCCGATGGTACCCGAGGCTCCCGCACGATCAAGGGCCTAGGTTGCCGATGGTGCTTGAGGCTCTC
1 GCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCC
* *
68094908 GCACGACTAAGGGCCTAGGTT
66 GCACGACCAAGGACCTAGGTT
* * * *
68094929 GCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGACTAGGTTGCCAATGGTG--TGAGGCTCTC
1 GCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCC
* *
68094992 GCAC-ATCCAAGCACCAAGG-T
66 GCACGA-CCAAGGACCTAGGTT
* * * * * ** *
68095012 GCCGATGGTGCCCGAGGCTCCTGCACAACCAAGGGCCTAGTTTACCGATAGTGTTCGAGGCTCTC
1 GCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCC
* *
68095077 GCAC-ATCAGAGGCACCAAGG-T
66 GCACGACCA-AGG-ACCTAGGTT
* *
68095098 GCCGATGCTGCTCGAGGCTCCCGCAC
1 GCCGATGGTGCCCGAGGCTCCCGCAC
68095124 ATCAGAGCAC
Statistics
Matches: 900, Mismatches: 154, Indels: 121
0.77 0.13 0.10
Matches are distributed among these distances:
73 1 0.00
74 4 0.00
75 16 0.02
76 20 0.02
77 23 0.03
78 16 0.02
79 11 0.01
80 2 0.00
82 1 0.00
83 48 0.05
84 122 0.14
85 390 0.43
86 246 0.27
ACGTcount: A:0.20, C:0.32, G:0.31, T:0.17
Consensus pattern (86 bp):
GCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCC
GCACGACCAAGGACCTAGGTT
Found at i:68094715 original size:69 final size:69
Alignment explanation
Indices: 68094601--68094736 Score: 200
Period size: 69 Copynumber: 2.0 Consensus size: 69
68094591 CAAGGGCCTA
* * *
68094601 GGTTACCAATGGTGTCCGAGGCTCCCGCACATCCAAGCACTAAGGTGCCGATAGTGTCCGAGACT
1 GGTTACCAATGGTATCCGAGGCTCCAGCACATCCAAGCACCAAGGTGCCGATAGTGTCCGAGACT
68094666 CCTT
66 CCTT
* * * * *
68094670 GGTTACCGATGGTATCCGAGGCTCTAGCACATCCAAGCACCAAGGTGCCGATGGTGTTCGAGGCT
1 GGTTACCAATGGTATCCGAGGCTCCAGCACATCCAAGCACCAAGGTGCCGATAGTGTCCGAGACT
68094735 CC
66 CC
68094737 AACACATCCA
Statistics
Matches: 59, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
69 59 1.00
ACGTcount: A:0.21, C:0.29, G:0.28, T:0.21
Consensus pattern (69 bp):
GGTTACCAATGGTATCCGAGGCTCCAGCACATCCAAGCACCAAGGTGCCGATAGTGTCCGAGACT
CCTT
Found at i:68094943 original size:86 final size:85
Alignment explanation
Indices: 68094715--68095190 Score: 418
Period size: 86 Copynumber: 5.6 Consensus size: 85
68094705 AGCACCAAGG
* * * *
68094715 TGCCGATGGTG-TTCGAGGCTC-CAACACATCCAAGCACCAAGG-TGCCGATGGTGCCCGAGGCT
1 TGCCGATGGTGCTT-GAGGCTCTC-GCACA-CTAAGGACCTAGGTTGCCGATGGTGCCCGAGGCT
* * *
68094777 CCCGCACGACCGAGGTCTTAGGT
63 CCCGCACGACCAAGGGCCTAGGT
* * * * *
68094800 TGCCGATGGTGC-CGAGGCTCTTGCACAACCAAGGGCCTAGGTTGCCGATGGTACCCGAGGCTCC
1 TGCCGATGGTGCTTGAGGCTCTCGCAC-ACTAAGGACCTAGGTTGCCGATGGTGCCCGAGGCTCC
*
68094864 CGCACGATCAAGGGCCTAGGT
65 CGCACGACCAAGGGCCTAGGT
*
68094885 TGCCGATGGTGCTTGAGGCTCTCGCACGACTAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCC
1 TGCCGATGGTGCTTGAGGCTCTCGCAC-ACTAAGGACCTAGGTTGCCGATGGTGCCCGAGGCTCC
*
68094950 CGCACGACCAAGGGACTAGGT
65 CGCACGACCAAGGGCCTAGGT
* * * *
68094971 TGCCAATGGTG--TGAGGCTCTCGCACATCCAAGCACCAAGG-TGCCGATGGTGCCCGAGGCTCC
1 TGCCGATGGTGCTTGAGGCTCTCGCACA-CTAAGGACCTAGGTTGCCGATGGTGCCCGAGGCTCC
* * *
68095033 TGCACAACCAAGGGCCTAGTT
65 CGCACGACCAAGGGCCTAGGT
* * * * *
68095054 TACCGATAGTG-TTCGAGGCTCTCGCACA-TCAGAGGCACCAAGG-TGCCGATGCTGCTCGAGGC
1 TGCCGATGGTGCTT-GAGGCTCTCGCACACT-A-AGG-ACCTAGGTTGCCGATGGTGCCCGAGGC
* ** *
68095116 TCCCGCAC-ATCAGAGCACCAAGG-
62 TCCCGCACGACCA-AGGGCCTAGGT
* * * * * * *
68095139 TGCCGATGCTACTCGAGGCTCTTGCACCACTGACGTCCTAGGTTGCCGATGG
1 TGCCGATGGTGCTTGAGGCTCTCGCA-CACTAAGGACCTAGGTTGCCGATGG
68095191 CATCCAAGGC
Statistics
Matches: 324, Mismatches: 51, Indels: 32
0.80 0.13 0.08
Matches are distributed among these distances:
83 48 0.15
84 50 0.15
85 109 0.34
86 116 0.36
87 1 0.00
ACGTcount: A:0.20, C:0.31, G:0.31, T:0.18
Consensus pattern (85 bp):
TGCCGATGGTGCTTGAGGCTCTCGCACACTAAGGACCTAGGTTGCCGATGGTGCCCGAGGCTCCC
GCACGACCAAGGGCCTAGGT
Found at i:68100492 original size:17 final size:16
Alignment explanation
Indices: 68100470--68100508 Score: 53
Period size: 15 Copynumber: 2.4 Consensus size: 16
68100460 GTCACATAGG
*
68100470 TCCACCGGCACCGCATT
1 TCCACCGG-AACGCATT
68100487 TCCACC-GAACGCATT
1 TCCACCGGAACGCATT
68100502 TCCACCG
1 TCCACCG
68100509 AAGAACGATA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
15 13 0.65
16 1 0.05
17 6 0.30
ACGTcount: A:0.21, C:0.46, G:0.15, T:0.18
Consensus pattern (16 bp):
TCCACCGGAACGCATT
Found at i:68100501 original size:15 final size:15
Alignment explanation
Indices: 68100481--68100510 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
68100471 CCACCGGCAC
68100481 CGCATTTCCACCGAA
1 CGCATTTCCACCGAA
68100496 CGCATTTCCACCGAA
1 CGCATTTCCACCGAA
68100511 GAACGATACA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.27, C:0.40, G:0.13, T:0.20
Consensus pattern (15 bp):
CGCATTTCCACCGAA
Found at i:68107879 original size:186 final size:187
Alignment explanation
Indices: 68107383--68107932 Score: 789
Period size: 180 Copynumber: 3.0 Consensus size: 187
68107373 ACTTAGTATT
* * * *
68107383 TTTAA-TT-GAAAATTTTTTCTGTTGGCCCAAAAGAAATACAAGAAGTCGAATAAAATATGGCAT
1 TTTAACTTAGAAAATTTTTTCTGTTGGCCCAAAACAAATACAAGAAGCCGAATGAAGTATGGCAT
* * *
68107446 -GATGGCAC-G-A---CAGAAAATTGAACAAGTACCCGGACCACCAACAGTTGGGAGCTCGCACT
66 GGATGGCACGGCACGGCAGAAAATTGAACAAGTGCCCGGACCACCAAAAGTTGGGAGCTCGCACC
* * *
68107505 CGCA-CACCACGGCCCCCGTTGTGCCATGTTTCCTGAGGGGGCGGGACGGCCAAGTG
131 CGCACCACCACGGCCCCCGTTGTGCCATATTTCCAGAGGGGGCGGCACGGCCAAGTG
*
68107561 TTTAACTTAGAAAATTTTTTTTGTTGGCCCAAAACAAATACAAGAAGCCGAATGAAGTAT-GCAT
1 TTTAACTTAGAAAATTTTTTCTGTTGGCCCAAAACAAATACAAGAAGCCGAATGAAGTATGGCAT
68107625 GGA----ACGGCACGGC--AAAATTGAACAAGTGCCCGGACCACCAACAA-TTGGGAGCTCGCAC
66 GGATGGCACGGCACGGCAGAAAATTGAACAAGTGCCCGGACCACCAA-AAGTTGGGAGCTCGCAC
* *
68107683 CCACACCACCATGGCCCCCGTTGTGCCATATTTCCAGAGGGGGCGGCACGGCCAAGTG
130 CCGCACCACCACGGCCCCCGTTGTGCCATATTTCCAGAGGGGGCGGCACGGCCAAGTG
68107741 TTTAACTTAG-AAATTTTTTCTGTTGGCCCAAAA-AAATACAAGAAGCCGAATGAAGTATGGCAT
1 TTTAACTTAGAAAATTTTTTCTGTTGGCCCAAAACAAATACAAGAAGCCGAATGAAGTATGGCAT
*
68107804 GGCATGGCACGGCACGGCAGAAAATTGAACAAGTGCCCAGACCACCAAAAGTTGGGAGCTCGCAC
66 GG-ATGGCACGGCACGGCAGAAAATTGAACAAGTGCCCGGACCACCAAAAGTTGGGAGCTCGCAC
* * *
68107869 CCGCACCACCACGGCCCCCATTGTGCCATATTTCCCGA-GGGGCGGCAAGGCCAAGTG
130 CCGCACCACCACGGCCCCCGTTGTGCCATATTTCCAGAGGGGGCGGCACGGCCAAGTG
68107926 TTTAACT
1 TTTAACT
68107933 AACTCCTTAC
Statistics
Matches: 333, Mismatches: 20, Indels: 31
0.87 0.05 0.08
Matches are distributed among these distances:
176 2 0.01
177 1 0.00
178 31 0.09
179 78 0.23
180 108 0.32
181 1 0.00
184 10 0.03
185 27 0.08
186 75 0.23
ACGTcount: A:0.30, C:0.25, G:0.24, T:0.20
Consensus pattern (187 bp):
TTTAACTTAGAAAATTTTTTCTGTTGGCCCAAAACAAATACAAGAAGCCGAATGAAGTATGGCAT
GGATGGCACGGCACGGCAGAAAATTGAACAAGTGCCCGGACCACCAAAAGTTGGGAGCTCGCACC
CGCACCACCACGGCCCCCGTTGTGCCATATTTCCAGAGGGGGCGGCACGGCCAAGTG
Found at i:68127310 original size:24 final size:24
Alignment explanation
Indices: 68127235--68127311 Score: 91
Period size: 24 Copynumber: 3.2 Consensus size: 24
68127225 CCGGTTAGGT
* *
68127235 TCCCGGTGGTGCTCCGACGATCCA
1 TCCCGGCGGTGCTCCGACGAGCCA
* * **
68127259 TTCCGGCGGTGCTCCGGCGAGCTT
1 TCCCGGCGGTGCTCCGACGAGCCA
*
68127283 TCCCGGCGGTGCTCCGATGAGCCA
1 TCCCGGCGGTGCTCCGACGAGCCA
68127307 TCCCG
1 TCCCG
68127312 AAATATAGAA
Statistics
Matches: 42, Mismatches: 11, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
24 42 1.00
ACGTcount: A:0.09, C:0.38, G:0.32, T:0.21
Consensus pattern (24 bp):
TCCCGGCGGTGCTCCGACGAGCCA
Found at i:68127654 original size:42 final size:42
Alignment explanation
Indices: 68127590--68127696 Score: 119
Period size: 42 Copynumber: 2.6 Consensus size: 42
68127580 GTGCCTTGGT
* * **
68127590 TGTGCAGGAGCCTCGGTG-ACCATCAGCACCTTAGTGCTCGGA
1 TGTGCGGGAGCCTTGG-GCACCATCAGCACCTTAGTGCAAGGA
* * *
68127632 TGTGCGGGAGCCTTGGGCACCATCGGCACTTTGGTGCAAGGA
1 TGTGCGGGAGCCTTGGGCACCATCAGCACCTTAGTGCAAGGA
*
68127674 TGTGCGAGAGCCTT-GGCACCATC
1 TGTGCGGGAGCCTTGGGCACCATC
68127697 GGCAACCTAG
Statistics
Matches: 56, Mismatches: 8, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
41 10 0.18
42 46 0.82
ACGTcount: A:0.18, C:0.27, G:0.34, T:0.21
Consensus pattern (42 bp):
TGTGCGGGAGCCTTGGGCACCATCAGCACCTTAGTGCAAGGA
Found at i:68127749 original size:43 final size:43
Alignment explanation
Indices: 68127675--68128174 Score: 595
Period size: 43 Copynumber: 11.8 Consensus size: 43
68127665 GTGCAAGGAT
* *
68127675 GTGCGAGAGCCT-TGGCACCATCGGCAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* *
68127717 GTACGGGACCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * *
68127760 ATGCGAGAGCCTC-GGCACCATCCGCAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
** *
68127802 GTGCGGGAGCCTCGAACACCATCGACAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * * *
68127845 CTACGGGAGCCTCGGACACCATCGGC-ACCTTGGCGCTTGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TC
* * *
68127887 GTAC-GG-GCCTCGGACACCATCGGCAACCCAGGCCCTTGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TC
* * *
68127928 GTGCGGAAGCCTCGGACACCATCGGCAACCTAGGCACTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * *
68127971 GTGCGGGAGTCTC-GGCACCATCGGCAACCTTGGCCCCTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* *
68128013 GTGCGAGAGCCTC-GGCACCATCGGCAACCTAGGCCCCTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * *
68128055 GTGCGGGAGCCTCGGGCACCATCGGTAACCTAGGCCCCTAGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * *
68128098 GTGCGGGAGCATCGGGCACCGTCGGAAACCTAGGCCCCTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
** *
68128141 GTGCGGGATTCTCGGGCACCATCGGTAACCTAGG
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGG
68128175 TGACTTCTAG
Statistics
Matches: 400, Mismatches: 50, Indels: 15
0.86 0.11 0.03
Matches are distributed among these distances:
40 18 0.05
41 18 0.05
42 141 0.35
43 223 0.56
ACGTcount: A:0.17, C:0.35, G:0.31, T:0.17
Consensus pattern (43 bp):
GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
Found at i:68127780 original size:85 final size:85
Alignment explanation
Indices: 68127675--68128174 Score: 609
Period size: 85 Copynumber: 5.9 Consensus size: 85
68127665 GTGCAAGGAT
* * *
68127675 GTGCGAGAGCCTTGGCACCATCGGCAACCTAGGCCCTTGGTCGTACGGGACCCTCGGGCACCATC
1 GTGCGAGAGCCTCGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATC
68127740 GGCAACCTAGGCCCTTGGTC
66 GGCAACCTAGGCCCTTGGTC
* * **
68127760 ATGCGAGAGCCTCGGCACCATCCGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGAACACCATC
1 GTGCGAGAGCCTCGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATC
*
68127825 GACAACCTAGGCCCTTGGTC
66 GGCAACCTAGGCCCTTGGTC
* * * * * * *
68127845 CTACGGGAGCCTCGGACACCATCGGC-ACCTTGGCGCTTGGAT-GTAC-GG-GCCTCGGACACCA
1 GTGCGAGAGCCTCGG-CACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCA
*
68127906 TCGGCAACCCAGGCCCTTGGAT-
64 TCGGCAACCTAGGCCCTTGG-TC
* *
68127928 GTGCG-GAAGCCTCGGACACCATCGGCAACCTAGGCACTTGGTCGTGCGGGAGTCTC-GGCACCA
1 GTGCGAG-AGCCTCGG-CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCA
* *
68127991 TCGGCAACCTTGGCCCCTGGTC
64 TCGGCAACCTAGGCCCTTGGTC
*
68128013 GTGCGAGAGCCTCGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATC
1 GTGCGAGAGCCTCGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATC
* * *
68128078 GGTAACCTAGGCCCCTAGTC
66 GGCAACCTAGGCCCTTGGTC
* * * * * **
68128098 GTGCGGGAGCATCGGGCACCGTCGGAAACCTAGGCCCCTGGTCGTGCGGGATTCTCGGGCACCAT
1 GTGCGAGAGCCTC-GGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCAT
*
68128163 CGGTAACCTAGG
65 CGGCAACCTAGG
68128175 TGACTTCTAG
Statistics
Matches: 363, Mismatches: 40, Indels: 23
0.85 0.09 0.05
Matches are distributed among these distances:
82 1 0.00
83 53 0.15
84 56 0.15
85 179 0.49
86 74 0.20
ACGTcount: A:0.17, C:0.35, G:0.31, T:0.17
Consensus pattern (85 bp):
GTGCGAGAGCCTCGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATC
GGCAACCTAGGCCCTTGGTC
Found at i:68135687 original size:41 final size:42
Alignment explanation
Indices: 68135634--68135738 Score: 126
Period size: 41 Copynumber: 2.5 Consensus size: 42
68135624 GGCTCTTGGT
* **
68135634 TGTGCAGGAGCCTCGGTG-ACCATCAGCA-CTTGGTGCTCGGA
1 TGTGCGGGAGCCTCGG-GCACCATCAGCACCTTGGTGCAAGGA
* *
68135675 TGTGCGGGAGCCTTGGGCACCATCGGCACCTTGGTGCAAGGA
1 TGTGCGGGAGCCTCGGGCACCATCAGCACCTTGGTGCAAGGA
*
68135717 TGTGCGAGAGCCTC-GGCACCAT
1 TGTGCGGGAGCCTCGGGCACCAT
68135739 TGGCAACCTA
Statistics
Matches: 55, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
40 1 0.02
41 31 0.56
42 23 0.42
ACGTcount: A:0.17, C:0.28, G:0.35, T:0.20
Consensus pattern (42 bp):
TGTGCGGGAGCCTCGGGCACCATCAGCACCTTGGTGCAAGGA
Found at i:68136234 original size:43 final size:43
Alignment explanation
Indices: 68136169--68136480 Score: 276
Period size: 43 Copynumber: 7.3 Consensus size: 43
68136159 GCACCATCGG
*
68136169 CATCGGCGCACCTAGGCC-CTGGTCGTGCGGGAGCCTCGGGCAC
1 CATCGGC-AACCTAGGCCTCTGGTCGTGCGGGAGCCTCGGGCAC
*
68136212 CATCGGCAACCTAGGCCTCTGGTCGTGCGGGAGCCTCGGGTAC
1 CATCGGCAACCTAGGCCTCTGGTCGTGCGGGAGCCTCGGGCAC
* * *
68136255 CAT-GGC-ACCTTCGTG-CT-TGGAT-GTACGGGAGCCTCGGACAC
1 CATCGGCAACC-TAG-GCCTCTGG-TCGTGCGGGAGCCTCGGGCAC
*
68136296 CATCGGCAACCTAGGCC-CTTGGTCGTGCGGAAGCCTCGGGCAC
1 CATCGGCAACCTAGGCCTC-TGGTCGTGCGGGAGCCTCGGGCAC
* *
68136339 CATCGGTAACCTAGGCC-CTTGGTCATGCGGGAGCCT-GGGCAC
1 CATCGGCAACCTAGGCCTC-TGGTCGTGCGGGAGCCTCGGGCAC
* * *
68136381 CATCGGC-ACCTTGCTGCCTC-GGAT-GTGCGGGAGCCTCGAGCAG
1 CATCGGCAACCTAG--GCCTCTGG-TCGTGCGGGAGCCTCGGGCAC
* * * *
68136424 CATTGGC-ACCTTGGTGCT-TGGAT-GTGCGGGAGCCTCGGACAC
1 CATCGGCAACCTAGG-CCTCTGG-TCGTGCGGGAGCCTCGGGCAC
*
68136466 CATAGGCAACCTAGG
1 CATCGGCAACCTAGG
68136481 ACGTTGGATG
Statistics
Matches: 226, Mismatches: 25, Indels: 36
0.79 0.09 0.13
Matches are distributed among these distances:
41 32 0.14
42 77 0.34
43 116 0.51
44 1 0.00
ACGTcount: A:0.16, C:0.32, G:0.34, T:0.19
Consensus pattern (43 bp):
CATCGGCAACCTAGGCCTCTGGTCGTGCGGGAGCCTCGGGCAC
Found at i:68136354 original size:127 final size:124
Alignment explanation
Indices: 68135602--68136480 Score: 702
Period size: 127 Copynumber: 7.2 Consensus size: 124
68135592 GCCTCGGACA
* * *
68135602 CCTCGGACACCATC-GCAAACTAGG-CTCTTGGTTGTGCAGGAGCCTCGGTG-ACCATCAGCA-C
1 CCTCGG-CACCATCGGCAACCTAGGCCTC-TGGTCGTGC-GGAGCCTCGG-GCACCATCGGCACC
* * * * ** **
68135663 TTGGTGCTCGGAT-GTGCGGGAGCCTTGGGCACCATCGGCACCTTGGTGCAAGGAT-GTGCGAGA
62 TTGGTGCTTGG-TCGTGCGGGAGCCTCGGACACCATCGGCACCTAGGCCCTTGG-TCGTGCG-GA
68135726 G
124 G
* * * *
68135727 CCTCGGCACCATTGGCAACCTAGGACCT-TGGTCGTACGGGAGCCTCGGGCACCATCGGAACCTA
1 CCTCGGCACCATCGGCAACCTAGG-CCTCTGGTCGTGC-GGAGCCTCGGGCACCATCGGCACCTT
** * * *
68135791 GGCCCTTGGTCGT-AGGGAGCCTCGG-CA-CATC-GTAACTAGGCCCTTGGTC-TG-GGAG
64 GGTGCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCACCTAGGCCCTTGGTCGTGCGGAG
* *
68135846 CCTCGGCACCATC-GC-ACCT-GGCCT-TGGT-GTGCGGAGCCTCGGACACCATCGGCAACCTAG
1 CCTCGGCACCATCGGCAACCTAGGCCTCTGGTCGTGCGGAGCCTCGGGCACCATCGGC-ACCTTG
*
68135906 G-CCTTGGTCGT--GGGAGCCTCGGACA-CAT-GG-ACCT-GG-CCTTGGT-GT-CGGAG
65 GTGCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCACCTAGGCCCTTGGTCGTGCGGAG
* *
68135956 -CTCGGCACCATCGGCAACCTAGGCCCCTGGT-GT-CGGAGCCTC--GCACCATCGGCACC-TAG
1 CCTCGGCACCATCGGCAACCTAGGCCTCTGGTCGTGCGGAGCCTCGGGCACCATCGGCACCTTGG
* *
68136015 -GCCTGGTCGTGC-GGAGCCTCGG-CACCATCGGCAACCTAGGCCCCTGGTCGTGCGGAG
66 TGCTTGGTCGTGCGGGAGCCTCGGACACCATCGGC-ACCTAGGCCCTTGGTCGTGCGGAG
* *
68136072 -CTCGGCACCATCGG-AACCTAGGCCCCTGGTCGTGCGGAGCCTC-GGCACCATCGGCAACCTAG
1 CCTCGGCACCATCGGCAACCTAGGCCTCTGGTCGTGCGGAGCCTCGGGCACCATCGGC-ACCTTG
** *
68136134 GCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCATCGGCGCACCTAGGCCC-TGGTCGTGCG
65 GTGCTTGGTCGTGCGGGAGCCTC-GG-A-CA-C--CATC-G-GCACCTAGGCCCTTGGTCGTGC-
68136198 GGAG
121 GGAG
*
68136202 CCTCGGGCACCATCGGCAACCTAGGCCTCTGGTCGTGCGGGAGCCTCGGGTACCAT-GGCACCTT
1 CCTC-GGCACCATCGGCAACCTAGGCCTCTGGTCGTGC-GGAGCCTCGGGCACCATCGGCACCTT
* *
68136266 CGTGCTTGGAT-GTACGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGAAG
64 GGTGCTTGG-TCGTGCGGGAGCCTCGGACACCATCGGC-ACCTAGGCCCTTGGTCGTGCGG-AG
* *
68136329 CCTCGGGCACCATCGGTAACCTAGGCC-CTTGGTCATGCGGGAGCCT-GGGCACCATCGGCACCT
1 CCTC-GGCACCATCGGCAACCTAGGCCTC-TGGTCGTGC-GGAGCCTCGGGCACCATCGGCACCT
* * * * * **
68136392 TGCTGCCTCGGAT-GTGCGGGAGCCTC-GAGCAGCATTGGCACCTTGGTGCTTGGAT-GTGCGGG
63 TGGTG-CTTGG-TCGTGCGGGAGCCTCGGA-CACCATCGGCACCTAGGCCCTTGG-TCGTGC-GG
68136454 AG
123 AG
*
68136456 CCTCGGACACCATAGGCAACCTAGG
1 CCTCGG-CACCATCGGCAACCTAGG
68136481 ACGTTGGATG
Statistics
Matches: 638, Mismatches: 57, Indels: 116
0.79 0.07 0.14
Matches are distributed among these distances:
108 11 0.02
109 28 0.04
110 26 0.04
111 6 0.01
112 31 0.05
113 43 0.07
114 16 0.03
115 25 0.04
116 23 0.04
117 13 0.02
118 13 0.02
119 18 0.03
120 2 0.00
121 14 0.02
122 17 0.03
123 6 0.01
124 9 0.01
125 53 0.08
126 36 0.06
127 109 0.17
128 29 0.05
129 14 0.02
130 17 0.03
131 6 0.01
132 13 0.02
133 41 0.06
134 12 0.02
135 7 0.01
ACGTcount: A:0.16, C:0.33, G:0.33, T:0.18
Consensus pattern (124 bp):
CCTCGGCACCATCGGCAACCTAGGCCTCTGGTCGTGCGGAGCCTCGGGCACCATCGGCACCTTGG
TGCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCACCTAGGCCCTTGGTCGTGCGGAG
Found at i:68136467 original size:170 final size:166
Alignment explanation
Indices: 68135675--68136503 Score: 718
Period size: 170 Copynumber: 5.1 Consensus size: 166
68135665 GGTGCTCGGA
* * * * ** * *
68135675 TGTGCGGGAGCCTTGGGCACCATCGG-CACCTTGGTGCAAGGAT-GTGCGAGAGCCTCGGCACCA
1 TGTGCGGAAGCCTCGGGCACCATCGGTCACCTAGG-CCCTGG-TCGTGCGGGAGCCTGGGCACCA
* * * * * **
68135738 TTGGCAACCTAGGACCT-TGGTCGTACGGGAGCCTCGGGCACCATCGGAACCTAGGCCCTTGG-T
64 TCGGCAACCTAGG-CCTCTGGTCGTGCGGGAGCCTC-GGCACCATTGGCACCTTGGTGCTTGGAT
* * *
68135801 CGT-AGGGAGCCTCGGCA-CATC-GTAA-CTAGGCCCTTGG
127 -GTGCGGGAGCCTCGGCACCATCGGCAACCTAGGCCCCTGG
* * *
68135838 TCTG-GG-AGCCTC-GGCACCATC-G-CACCT-GGCCTTGGT-GTGC-GGAGCCTCGGACACCAT
1 TGTGCGGAAGCCTCGGGCACCATCGGTCACCTAGGCCCTGGTCGTGCGGGAGCCT-GGGCACCAT
*
68135895 CGGCAACCTAGGCCT-TGGTCGT--GGGAGCCTCGG-ACACA-TGG-ACC-TGG-CCTTGG-TGT
65 CGGCAACCTAGGCCTCTGGTCGTGCGGGAGCCTCGGCAC-CATTGGCACCTTGGTGCTTGGATGT
68135951 -C-GGAG-CTCGGCACCATCGGCAACCTAGGCCCCTGG
129 GCGGGAGCCTCGGCACCATCGGCAACCTAGGCCCCTGG
*
68135986 TGT-CGG-AGCCTC--GCACCATCGG-CACCTAGG-CCTGGTCGTGC-GGAGCCTCGGCACCATC
1 TGTGCGGAAGCCTCGGGCACCATCGGTCACCTAGGCCCTGGTCGTGCGGGAGCCTGGGCACCATC
* * * * ** *
68136044 GGCAACCTAGGCCCCTGGTCGTGC-GGAG-CTCGGCACCATCGGAACCTAGGCCCCTGG-TCGTG
66 GGCAACCTAGGCCTCTGGTCGTGCGGGAGCCTCGGCACCATTGGCACCTTGGTGCTTGGAT-GTG
68136106 C-GGAGCCTCGGCACCATCGGCAACCTAGGCCCCTGG
130 CGGGAGCCTCGGCACCATCGGCAACCTAGGCCCCTGG
*
68136142 TCGTGCGGGAGCCTCGGGCACCATCGGCATCGGCGCACCTAGGCCCTGGTCGTGCGGGAGCCTCG
1 T-GTGCGGAAGCCTCGGGCACCATCGG--T-----CACCTAGGCCCTGGTCGTGCGGGAGCCT-G
* *
68136207 GGCACCATCGGCAACCTAGGCCTCTGGTCGTGCGGGAGCCTCGGGTACCA-TGGCACCTTCGTGC
57 GGCACCATCGGCAACCTAGGCCTCTGGTCGTGCGGGAGCCTC-GGCACCATTGGCACCTTGGTGC
* *
68136271 TTGGATGTACGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGG
121 TTGGATGTGCGGGAGCCTCGG-CACCATCGGCAACCTAGGCCCCTGG
* *
68136318 TCGTGCGGAAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCATGCGGGAGCCTGGGCACCA
1 T-GTGCGGAAGCCTCGGGCACCATCGGTCACCTAGGCCC-TGGTCGTGCGGGAGCCTGGGCACCA
* *
68136383 TCGGC-ACCTTGCTGCCTC-GGAT-GTGCGGGAGCCTCGAGCAGCATTGGCACCTTGGTGCTTGG
64 TCGGCAACCTAG--GCCTCTGG-TCGTGCGGGAGCCTCG-GCACCATTGGCACCTTGGTGCTTGG
* * **
68136445 ATGTGCGGGAGCCTCGGACACCATAGGCAACCTAGGACGTTGG
125 ATGTGCGGGAGCCTCGG-CACCATCGGCAACCTAGGCCCCTGG
*
68136488 ATGTGCGGATGCCTCG
1 -TGTGCGGAAGCCTCG
68136504 AGCAGCAGGG
Statistics
Matches: 571, Mismatches: 46, Indels: 91
0.81 0.06 0.13
Matches are distributed among these distances:
145 7 0.01
146 8 0.01
147 13 0.02
148 60 0.11
149 29 0.05
150 11 0.02
151 7 0.01
152 6 0.01
153 15 0.03
154 2 0.00
155 21 0.04
156 54 0.09
157 5 0.01
158 5 0.01
159 12 0.02
160 9 0.02
161 15 0.03
162 2 0.00
163 3 0.01
168 6 0.01
169 50 0.09
170 102 0.18
171 8 0.01
172 32 0.06
173 4 0.01
174 18 0.03
175 17 0.03
176 50 0.09
ACGTcount: A:0.16, C:0.33, G:0.34, T:0.18
Consensus pattern (166 bp):
TGTGCGGAAGCCTCGGGCACCATCGGTCACCTAGGCCCTGGTCGTGCGGGAGCCTGGGCACCATC
GGCAACCTAGGCCTCTGGTCGTGCGGGAGCCTCGGCACCATTGGCACCTTGGTGCTTGGATGTGC
GGGAGCCTCGGCACCATCGGCAACCTAGGCCCCTGG
Found at i:68136502 original size:43 final size:42
Alignment explanation
Indices: 68135602--68136503 Score: 577
Period size: 42 Copynumber: 22.1 Consensus size: 42
68135592 GCCTCGGACA
* * *
68135602 CCTCGGACACCATC-GCAAACTAGGCTCTTGGTTGTGCAGGAG
1 CCTCGGACACCATCGGCAACCTAGGC-CTTGGATGTGCGGGAG
** * * * *
68135644 CCTCGGTGACCATCAGC-A-CTTGGTGCTCGGATGTGCGGGAG
1 CCTCGGACACCATCGGCAACCTAGG-CCTTGGATGTGCGGGAG
* * * * ** *
68135685 CCTTGGGCACCATCGGC-ACCTTGGTGCAAGGATGTGCGAGAG
1 CCTCGGACACCATCGGCAACCTAGG-CCTTGGATGTGCGGGAG
* *
68135727 CCTCGG-CACCATTGGCAACCTAGGACCTTGG-TCGTACGGGAG
1 CCTCGGACACCATCGGCAACCTAGG-CCTTGGAT-GTGCGGGAG
* *
68135769 CCTCGGGCACCATCGG-AACCTAGGCCCTTGG-TCGT-AGGGAG
1 CCTCGGACACCATCGGCAACCTAGG-CCTTGGAT-GTGCGGGAG
* *
68135810 CCTCGG-CA-CATC-GTAA-CTAGGCCCTTGG-TCT--GGGAG
1 CCTCGGACACCATCGGCAACCTAGG-CCTTGGATGTGCGGGAG
68135846 CCTCGG-CACCATC-GC-ACCT-GGCCTTGG-TGTGC-GGAG
1 CCTCGGACACCATCGGCAACCTAGGCCTTGGATGTGCGGGAG
68135882 CCTCGGACACCATCGGCAACCTAGGCCTTGG-TCGT--GGGAG
1 CCTCGGACACCATCGGCAACCTAGGCCTTGGAT-GTGCGGGAG
68135922 CCTCGGACA-CAT-GG--ACCT-GGCCTTGG-TGT-C-GGAG
1 CCTCGGACACCATCGGCAACCTAGGCCTTGGATGTGCGGGAG
*
68135956 -CTCGG-CACCATCGGCAACCTAGGCCCCTGG-TGT-C-GGAG
1 CCTCGGACACCATCGGCAACCTAGG-CCTTGGATGTGCGGGAG
68135994 CCTC-G-CACCATCGGC-ACCTAGGCC-TGG-TCGTGC-GGAG
1 CCTCGGACACCATCGGCAACCTAGGCCTTGGAT-GTGCGGGAG
*
68136031 CCTCGG-CACCATCGGCAACCTAGGCCCCTGG-TCGTGC-GGAG
1 CCTCGGACACCATCGGCAACCTAGG-CCTTGGAT-GTGCGGGAG
*
68136072 -CTCGG-CACCATCGG-AACCTAGGCCCCTGG-TCGTGC-GGAG
1 CCTCGGACACCATCGGCAACCTAGG-CCTTGGAT-GTGCGGGAG
*
68136111 CCTCGG-CACCATCGGCAACCTAGGCCCCTGG-TCGTGCGGGAG
1 CCTCGGACACCATCGGCAACCTAGG-CCTTGGAT-GTGCGGGAG
* *
68136153 CCTCGGGCACCATCGGCATCGGCGCACCTAGGCCCTGG-TCGTGCGGGAG
1 CCTC-GG-A-CA-C--CATCGGC-AACCTAGGCCTTGGAT-GTGCGGGAG
*
68136202 CCTCGGGCACCATCGGCAACCTAGGCCTCTGG-TCGTGCGGGAG
1 CCTCGGACACCATCGGCAACCTAGGCCT-TGGAT-GTGCGGGAG
** * *
68136245 CCTCGGGTACCAT-GGC-ACCTTCGTG-CTTGGATGTACGGGAG
1 CCTCGGACACCATCGGCAACC-TAG-GCCTTGGATGTGCGGGAG
*
68136286 CCTCGGACACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGAAG
1 CCTCGGACACCATCGGCAACCTAGG-CCTTGGAT-GTGCGGGAG
* * *
68136329 CCTCGGGCACCATCGGTAACCTAGGCCCTTGG-TCATGCGGGAG
1 CCTCGGACACCATCGGCAACCTAGG-CCTTGGAT-GTGCGGGAG
* * *
68136372 CCT-GGGCACCATCGGC-ACCTTGCTGCCTCGGATGTGCGGGAG
1 CCTCGGACACCATCGGCAACCTAG--GCCTTGGATGTGCGGGAG
* * * *
68136414 CCTC-GAGCAGCATTGGC-ACCTTGGTGCTTGGATGTGCGGGAG
1 CCTCGGA-CACCATCGGCAACCTAGG-CCTTGGATGTGCGGGAG
* *
68136456 CCTCGGACACCATAGGCAACCTAGGACGTTGGATGTGC-GGATG
1 CCTCGGACACCATCGGCAACCTAGG-CCTTGGATGTGCGGGA-G
68136499 CCTCG
1 CCTCG
68136504 AGCAGCAGGG
Statistics
Matches: 739, Mismatches: 61, Indels: 119
0.80 0.07 0.13
Matches are distributed among these distances:
32 2 0.00
33 8 0.01
34 8 0.01
35 21 0.03
36 38 0.05
37 33 0.04
38 53 0.07
39 48 0.06
40 54 0.07
41 120 0.16
42 168 0.23
43 143 0.19
45 1 0.00
46 4 0.01
47 1 0.00
48 2 0.00
49 28 0.04
50 7 0.01
ACGTcount: A:0.16, C:0.32, G:0.33, T:0.18
Consensus pattern (42 bp):
CCTCGGACACCATCGGCAACCTAGGCCTTGGATGTGCGGGAG
Found at i:68164974 original size:42 final size:42
Alignment explanation
Indices: 68164922--68165027 Score: 128
Period size: 42 Copynumber: 2.5 Consensus size: 42
68164912 GGCTCTTGGT
* *
68164922 TGTGCAGGAGCCTCGGTG-ACCATCAGCACCTTGGTGCT-CGGA
1 TGTGCGGGAGCCTCGG-GCACCATCAGCACCTTGGTG-TAAGGA
* *
68164964 TGTGCGGGAGCCTTGGGCACCATCGGCACCTTGGTGTAAGGA
1 TGTGCGGGAGCCTCGGGCACCATCAGCACCTTGGTGTAAGGA
*
68165006 TGTGCGAGAGCCTC-GGCACCAT
1 TGTGCGGGAGCCTCGGGCACCAT
68165028 TGGCAACCTA
Statistics
Matches: 56, Mismatches: 6, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
41 10 0.18
42 46 0.82
ACGTcount: A:0.17, C:0.27, G:0.35, T:0.21
Consensus pattern (42 bp):
TGTGCGGGAGCCTCGGGCACCATCAGCACCTTGGTGTAAGGA
Found at i:68165076 original size:43 final size:43
Alignment explanation
Indices: 68164900--68165715 Score: 881
Period size: 43 Copynumber: 19.2 Consensus size: 43
68164890 CTCGAACACT
* * * * *
68164900 ATCGGAAAACTAGGCTCTTGGTTGTGCAGGAGCCTCGGTG-ACC
1 ATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG-GCACC
* * ** * *
68164943 ATCAGC-ACCTTGGTGCTCGGAT-GTGCGGGAGCCTTGGGCACC
1 ATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACC
* ** * *
68164985 ATCGGC-ACCTTGG-TGTAAGGAT-GTGCGAGAGCCTC-GGCACC
1 ATCGGCAACCTAGGCCCT-TGG-TCGTGCGGGAGCCTCGGGCACC
* * *
68165026 ATTGGCAACCTAGGACCTTGGTCGTACGGGAGCCTCGGGCACC
1 ATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACC
*
68165069 ATCGGCAACCTAGGCCCTTGGTCGTACGGGAGCCTCGGGCACC
1 ATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACC
* *
68165112 ATTGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTC-GGCACC
1 ATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACC
* *
68165154 ATCGGCAACCTAGGCCCTTGGTCGTACGGGAGCCTCGGACACC
1 ATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACC
* * * *
68165197 ATCGGC-ACCTTGGCGCTTGGGT-GTACGGGAGCCTCGGACACC
1 ATCGGCAACCTAGGCCCTT-GGTCGTGCGGGAGCCTCGGGCACC
* * *
68165239 ATTGGCAACCTAGGCCCTTGGAT-GTGCGGAAGCCTCGGACACC
1 ATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACC
* *
68165282 ATCGGCAACCTAGGCCCCTGGTCGTGCGAGAGCCTC-GGCACC
1 ATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACC
* *
68165324 ATCGACAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACC
1 ATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACC
* *
68165367 ATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCGTCGGGCACC
1 ATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACC
** * *
68165410 ATCGGTGACCTAGGCCCCTGGTCGTGCGGGATCCTCGGGCACC
1 ATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACC
* *
68165453 ATCGGCAACCTAGGCCCCTGGTCGTGCGAGAGCCTCGGGCACC
1 ATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACC
* * * *
68165496 ATCGAC-ACCTAGGCCCCTGGTCGTTCGGGAGCCTCGGCCACC
1 ATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACC
* *
68165538 ATCGGTAACCTAGG-CCTCTGGTCGTGCGGGAGCCTCCGGCACC
1 ATCGGCAACCTAGGCCCT-TGGTCGTGCGGGAGCCTCGGGCACC
* ** ** * * *
68165581 ACCGGC-ACCTTCGTGCTTGGAT-GTACGGGAGCCTCGGACACA
1 ATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACC
* *
68165623 ATCGGTAACCTAGGCCCTTGGTCGTGCAGGAGCCTCGGGCACC
1 ATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACC
* * * *
68165666 ATCGGTAGCCTAGGCCCATGGTCATGCGGGAGCCTCGGGCACC
1 ATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACC
68165709 ATCGGCA
1 ATCGGCA
68165716 CCTTGCTGCC
Statistics
Matches: 665, Mismatches: 89, Indels: 38
0.84 0.11 0.05
Matches are distributed among these distances:
41 14 0.02
42 255 0.38
43 396 0.60
ACGTcount: A:0.17, C:0.33, G:0.33, T:0.18
Consensus pattern (43 bp):
ATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACC
Found at i:68165162 original size:128 final size:128
Alignment explanation
Indices: 68165007--68165715 Score: 871
Period size: 128 Copynumber: 5.5 Consensus size: 128
68164997 GTGTAAGGAT
* * *
68165007 GTGCGAGAGCCTCGGCACCATTGGCAACCTAGGACCTTGGTCGTACGGGAGCCTCGGGCACCATC
1 GTGCGAGAGCCTCGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATC
*
68165072 GGCAACCTAGGCCCTTGGTCGTACGGGAGCCTCGGGCACCATTGGCAACCTAGGCCCTTGGTC
66 GGCAACCTAGGCCCTTGGTCGTACGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* *
68165135 GTGCGAGAGCCTCGGCACCATCGGCAACCTAGGCCCTTGGTCGTACGGGAGCCTCGGACACCATC
1 GTGCGAGAGCCTCGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATC
* * * *
68165200 GGC-ACCTTGGCGCTTGGGT-GTACGGGAGCCTCGGACACCATTGGCAACCTAGGCCCTTGGAT-
66 GGCAACCTAGGCCCTT-GGTCGTACGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TC
* *
68165262 GTGCG-GAAGCCTCGGACACCATCGGCAACCTAGGCCCCTGGTCGTGCGAGAGCCTC-GGCACCA
1 GTGCGAG-AGCCTCGG-CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCA
* * * *
68165325 TCGACAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTC
64 TCGGCAACCTAGGCCCTTGGTCGTACGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * ** * *
68165390 GTGCGGGAGCGTCGGGCACCATCGGTGACCTAGGCCCCTGGTCGTGCGGGATCCTCGGGCACCAT
1 GTGCGAGAGCCTC-GGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCAT
* * * * *
68165455 CGGCAACCTAGGCCCCTGGTCGTGCGAGAGCCTCGGGCACCATCGAC-ACCTAGGCCCCTGGTC
65 CGGCAACCTAGGCCCTTGGTCGTACGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * *
68165518 GTTCGGGAGCCTCGGCCACCATCGGTAACCTAGG-CCTCTGGTCGTGCGGGAGCCTCCGGCACCA
1 GTGCGAGAGCCTCGG-CACCATCGGCAACCTAGGCCCT-TGGTCGTGCGGGAGCCTCGGGCACCA
* ** ** * * *
68165582 CCGGC-ACCTTCGTGCTTGGAT-GTACGGGAGCCTCGGACACAATCGGTAACCTAGGCCCTTGGT
64 TCGGCAACCTAGGCCCTTGG-TCGTACGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGT
68165645 C
128 C
* * * *
68165646 GTGC-AGGAGCCTCGGGCACCATCGGTAGCCTAGGCCCATGGTCATGCGGGAGCCTCGGGCACCA
1 GTGCGA-GAGCCTC-GGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCA
68165710 TCGGCA
64 TCGGCA
68165716 CCTTGCTGCC
Statistics
Matches: 511, Mismatches: 52, Indels: 35
0.85 0.09 0.06
Matches are distributed among these distances:
126 1 0.00
127 110 0.22
128 341 0.67
129 59 0.12
ACGTcount: A:0.16, C:0.34, G:0.33, T:0.17
Consensus pattern (128 bp):
GTGCGAGAGCCTCGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATC
GGCAACCTAGGCCCTTGGTCGTACGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
Found at i:68165169 original size:85 final size:86
Alignment explanation
Indices: 68165007--68165715 Score: 864
Period size: 85 Copynumber: 8.3 Consensus size: 86
68164997 GTGTAAGGAT
* * * * *
68165007 GTGCGAGAGCCTC-GGCACCATTGGCAACCTAGGACCTTGGTCGTACGGGAGCCTCGGGCACCAT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCAT
68165071 CGGCAACCTAGGCCCTTGGTC
66 CGGCAACCTAGGCCCTTGGTC
* *
68165092 GTACGGGAGCCTCGGGCACCATTGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTC-GGCACCAT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCAT
68165156 CGGCAACCTAGGCCCTTGGTC
66 CGGCAACCTAGGCCCTTGGTC
* * * * * * *
68165177 GTACGGGAGCCTCGGACACCATCGGC-ACCTTGGCGCTTGGGT-GTACGGGAGCCTCGGACACCA
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTT-GGTCGTGCGAGAGCCTCGGGCACCA
*
68165240 TTGGCAACCTAGGCCCTTGGAT-
65 TCGGCAACCTAGGCCCTTGG-TC
* * *
68165262 GTGCGGAAGCCTCGGACACCATCGGCAACCTAGGCCCCTGGTCGTGCGAGAGCCTC-GGCACCAT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCAT
* *
68165326 CGACAACCTAGGCCCCTGGTC
66 CGGCAACCTAGGCCCTTGGTC
* * *
68165347 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCGTCGGGCACCAT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCAT
** *
68165412 CGGTGACCTAGGCCCCTGGTC
66 CGGCAACCTAGGCCCTTGGTC
* *
68165433 GTGCGGGATCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGAGAGCCTCGGGCACCAT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCAT
* *
68165498 CGAC-ACCTAGGCCCCTGGTC
66 CGGCAACCTAGGCCCTTGGTC
* * * * *
68165518 GTTCGGGAGCCTCGGCCACCATCGGTAACCTAGG-CCTCTGGTCGTGCGGGAGCCTCCGGCACCA
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCT-TGGTCGTGCGAGAGCCTCGGGCACCA
* ** **
68165582 CCGGC-ACCTTCGTGCTTGGAT-
65 TCGGCAACCTAGGCCCTTGG-TC
* * * *
68165603 GTACGGGAGCCTCGGACACAATCGGTAACCTAGGCCCTTGGTCGTGC-AGGAGCCTCGGGCACCA
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGA-GAGCCTCGGGCACCA
* * *
68165667 TCGGTAGCCTAGGCCCATGGTC
65 TCGGCAACCTAGGCCCTTGGTC
*
68165689 ATGCGGGAGCCTCGGGCACCATCGGCA
1 GTGCGGGAGCCTCGGGCACCATCGGCA
68165716 CCTTGCTGCC
Statistics
Matches: 542, Mismatches: 68, Indels: 27
0.85 0.11 0.04
Matches are distributed among these distances:
84 24 0.04
85 334 0.62
86 184 0.34
ACGTcount: A:0.16, C:0.34, G:0.33, T:0.17
Consensus pattern (86 bp):
GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCAT
CGGCAACCTAGGCCCTTGGTC
Found at i:68165787 original size:42 final size:43
Alignment explanation
Indices: 68165690--68165787 Score: 126
Period size: 43 Copynumber: 2.3 Consensus size: 43
68165680 CCCATGGTCA
* *
68165690 TGCGGGAGCCTCGGGCACCATCGGCACCTTGCTGCCTCGGATG
1 TGCGGGAGCCTCGAGCACCATCGGCACCATGCTGCCTCGGATG
* * * * *
68165733 TGCGGGAGCCTCGATCAGCATTGGCACCATGGTG-CTTGGATG
1 TGCGGGAGCCTCGAGCACCATCGGCACCATGCTGCCTCGGATG
68165775 TGCGGGAGCCTCG
1 TGCGGGAGCCTCG
68165788 GATACCATAG
Statistics
Matches: 48, Mismatches: 7, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
42 20 0.42
43 28 0.58
ACGTcount: A:0.13, C:0.30, G:0.37, T:0.20
Consensus pattern (43 bp):
TGCGGGAGCCTCGAGCACCATCGGCACCATGCTGCCTCGGATG
Found at i:68165822 original size:128 final size:125
Alignment explanation
Indices: 68164900--68165807 Score: 850
Period size: 128 Copynumber: 7.1 Consensus size: 125
68164890 CTCGAACACT
* * * * * * *
68164900 ATCGGAAAACTAGGCTCTTGGTTGTGCAGGAGCCTCGGTG-ACCATCAGCACCTTGGTGCTCGGA
1 ATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG-GCACCATCGGCACCTTGG-CCTCGGA
* * ** * *
68164964 TGTGCGGGAGCCTTGGGCACCATCGGCACCTTGG-TGTAAGGAT-GTGCGAGAGCCTCGGCACC
64 TGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCT-TGG-TCGTGCGGGAGCCTCGGCACC
* * * * *
68165026 ATTGGCAACCTAGGACCTTGGTCGTACGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-
1 ATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTTGG-CCTCGGA
* * *
68165090 TCGTACGGGAGCCTCGGGCACCATTGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGCACC
64 T-GTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGCACC
* * * *
68165154 ATCGGCAACCTAGGCCCTTGGTCGTACGGGAGCCTCGGACACCATCGGCACCTTGGCGCTTGGGT
1 ATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTTGGC-CTCGGAT
* * * *
68165219 GTACGGGAGCCTCGGACACCATTGGCAACCTAGGCCCTTGGAT-GTGCGGAAGCCTCGGACACC
65 GTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGG-CACC
* * * * *
68165282 ATCGGCAACCTAGGCCCCTGGTCGTGCGAGAGCCTC-GGCACCATCGACAACCTAGGCCCCTGG-
1 ATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTTGGCCTC-GGA
* *
68165345 TCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCGTCGGGCACC
64 T-GTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTC-GGCACC
** * * * *
68165410 ATCGGTGACCTAGGCCCCTGGTCGTGCGGGATCCTCGGGCACCATCGGCAACCTAGGCCCCTGG-
1 ATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTTGGCCTC-GGA
* * * *
68165474 TCGTGCGAGAGCCTCGGGCACCATCGACACCTAGGCCCCTGGTCGTTCGGGAGCCTCGGCCACC
64 T-GTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG-CACC
* * * *
68165538 ATCGGTAACCTAGG-CCTCTGGTCGTGCGGGAGCCTCCGGCACCACCGGCACCTTCGTG-CTTGG
1 ATCGGCAACCTAGGCCCT-TGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTT-G-GCCTCGG
* * * * *
68165601 ATGTACGGGAGCCTCGGACACAATCGGTAACCTAGGCCCTTGGTCGTGCAGGAGCCTCGGGCACC
63 ATGTGCGGGAGCCTCGGGCACCATCGG-CACCTAGGCCCTTGGTCGTGCGGGAGCCTC-GGCACC
* * * *
68165666 ATCGGTAGCCTAGGCCCATGGTCATGCGGGAGCCTCGGGCACCATCGGCACCTTGCTGCCTCGGA
1 ATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTTG--GCCTCGGA
** * * ** *
68165731 TGTGCGGGAGCCTCGATCAGCATTGGCACC-ATGGTGCTTGGAT-GTGCGGGAGCCTCGGATACC
64 TGTGCGGGAGCCTCGGGCACCATCGGCACCTA-GGCCCTTGG-TCGTGCGGGAGCCTCGG-CACC
*
68165794 ATAGGCAACCTAGG
1 ATCGGCAACCTAGG
68165808 ACGTTGGATG
Statistics
Matches: 666, Mismatches: 87, Indels: 56
0.82 0.11 0.07
Matches are distributed among these distances:
125 1 0.00
126 40 0.06
127 145 0.22
128 394 0.59
129 86 0.13
ACGTcount: A:0.17, C:0.32, G:0.33, T:0.18
Consensus pattern (125 bp):
ATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTTGGCCTCGGATG
TGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGCACC
Found at i:68168859 original size:46 final size:46
Alignment explanation
Indices: 68168806--68168928 Score: 201
Period size: 46 Copynumber: 2.7 Consensus size: 46
68168796 GGCATCTGAG
* **
68168806 CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTTCGAA
1 CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAA
* *
68168852 CTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGCCCGAG
1 CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAA
68168898 CTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 CTCGTTGAGTTGAGTCCGAGTTCACTTATGG
68168929 GCGGGTTACA
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
46 71 1.00
ACGTcount: A:0.20, C:0.20, G:0.29, T:0.32
Consensus pattern (46 bp):
CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAA
Found at i:68177828 original size:24 final size:23
Alignment explanation
Indices: 68177801--68177860 Score: 75
Period size: 24 Copynumber: 2.5 Consensus size: 23
68177791 GGTTAGGTTC
68177801 CCGGCGGTGCTCCGGCGATCCATT
1 CCGGCGGTGCTCCGGCGA-CCATT
* * *
68177825 CCGGCGGTACTCCGGCGAGCTTT
1 CCGGCGGTGCTCCGGCGACCATT
68177848 CCTGGCGGTGCTC
1 CC-GGCGGTGCTC
68177861 TAGTGAGCCA
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
23 5 0.16
24 26 0.84
ACGTcount: A:0.07, C:0.37, G:0.35, T:0.22
Consensus pattern (23 bp):
CCGGCGGTGCTCCGGCGACCATT
Found at i:68178208 original size:43 final size:43
Alignment explanation
Indices: 68178157--68179424 Score: 1012
Period size: 42 Copynumber: 29.8 Consensus size: 43
68178147 CCTTGGATGT
* * *
68178157 TGCGGGAGCCTCGGACACCATCGGCAAACTAGGCTCTTGGTTG
1 TGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCG
* * ** * * * *
68178200 TGCAGGAGCCTTGGTGACCATCAGC-ACCT-TGCTGCTCGGAT-G
1 TGCGGGAGCCTCGGACACCATCGGCAACCTAGGC-CCTTGG-TCG
* * * ** **
68178242 TGCGGGAGCCTTGGGCACCATCGGC-ACCTTGGTGCAAGGAT-G
1 TGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGG-TCG
* * * *
68178284 TGCGAGAGCCTCGG-CACCATTGGCAACTTAGGACCTTGGTCG
1 TGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCG
* * * *
68178326 TACGGGAGCCTCGGGCACCACCGGCAACCTAGGCCCTTGATCG
1 TGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCG
* * *
68178369 TACGGGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCG
1 TGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCG
* * *
68178412 TACGAGAGCCTCGG-CACCATCCGCAACCTAGGCCCTTGGTCG
1 TGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCG
*
68178454 TGCGGGAGCCTCGGACACCATC-GAAACCTAGGCCC-TGGTCG
1 TGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCG
* * * *
68178495 TTCGGGAGCCTCAGACACCATCGGC-ACCTTGGCGCTTGGAT-G
1 TGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGG-TCG
* * * *
68178537 TACGGGAGCCTCGGACACCTCGGACACCATCGGCAAACTAGGCTCTTGGTTG
1 TGCGGGA------G---CCTCGGACACCATCGGCAACCTAGGCCCTTGGTCG
* * * * *
68178589 TGCAGGAGCCTTGGTA-ACCATCAGC-ACCT-TGCTGCTTGGAT-G
1 TGCGGGAGCCTCGG-ACACCATCGGCAACCTAGGC-CCTTGG-TCG
* * * * ** **
68178631 TGCGGGAGCCTTGGGCACCATCGAC-ACCTTGGTGCAAGGAT-G
1 TGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGG-TCG
* * *
68178673 TGCGAGG-GCCTCGG-CACCATTGGCAACTTAGGACCTTGGTCG
1 TGCG-GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCG
* * * * *
68178715 TACGGGAGCCTCGGGCACCACCGGCAACCTAGGCCCTCGATCG
1 TGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCG
* *
68178758 TACGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCG
1 TGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCG
* *
68178801 TGCGAGAGCCTCGGACACCATCGACAACCTAGGCCCTTGGTCG
1 TGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCG
* * *
68178844 TACGGGAGCCTCGGACACCATCGGC-ACCTTGGCGCTTGGAT-G
1 TGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGG-TCG
* * *
68178886 TACGGGAGCCTCAGACACCATCGGTAACCTAGGCCCTTGGAT-G
1 TGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGG-TCG
* * * *
68178929 TGCGGAATCCTCAGACACCATCGGCAACCTAGGCCCTTGGTCA
1 TGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCG
* * * * *
68178972 TGCGAGAGCCTCGG-TATCATCGGCAATCTAGGCCCCTGGTCG
1 TGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCG
* *
68179014 TGCGGGAGCGTCGG-TACCATCGGCAACCTAGGACCC-TGGTCG
1 TGCGGGAGCCTCGGACACCATCGGCAACCTAGG-CCCTTGGTCG
* * *
68179056 TGCGGGATCCTTGGGCACCATCGGCAACCTAGGCCC-TGGTCG
1 TGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCG
* * *
68179098 TGCGAGAGCCTCGGGCACCATCGGC-ACCTAGGCCCCTGGTCG
1 TGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCG
*
68179140 TGCGGGAGCCTCGG-CACCATCGGCAACCTAAGCCC-TGGTCG
1 TGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCG
* ** **
68179181 TGCGGGAGCCTCGGGCACCATC-GC-ACCTTCGTGCTTGGAT-G
1 TGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGG-TCG
* *
68179222 TACGGGAGCCTCGGACACCATCGACAACCTAGGCCCTTGGTCG
1 TGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCG
* * * *
68179265 TGTGGGAGCCTCGG-CACCATCGGTAACCTAAGCCCTTGGTCA
1 TGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCG
* * ** *
68179307 TGCGGGAGCCTCGGGCACCACCGGC-ACCT-TCCTGCCTCGGAT-G
1 TGCGGGAGCCTCGGACACCATCGGCAACCTAGGC--CCTTGG-TCG
* * * **
68179350 TGCGGGAGCCTC-GAGCAGCATTGGC-ACCTTGGTGCTTGGAT-G
1 TGCGGGAGCCTCGGA-CACCATCGGCAACCTAGGCCCTTGG-TCG
*
68179392 TGCGGGAGCCTCGGACACCATAGGCAACCTAGG
1 TGCGGGAGCCTCGGACACCATCGGCAACCTAGG
68179425 ATGTTGGATG
Statistics
Matches: 1011, Mismatches: 162, Indels: 104
0.79 0.13 0.08
Matches are distributed among these distances:
40 6 0.01
41 126 0.12
42 446 0.44
43 395 0.39
44 2 0.00
46 1 0.00
48 1 0.00
51 17 0.02
52 17 0.02
ACGTcount: A:0.18, C:0.32, G:0.31, T:0.19
Consensus pattern (43 bp):
TGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCG
Found at i:68178447 original size:85 final size:86
Alignment explanation
Indices: 68178157--68179424 Score: 1028
Period size: 85 Copynumber: 14.9 Consensus size: 86
68178147 CCTTGGATGT
* * * * * *
68178157 TGCGGGAGCCTCGGACACCATCGGCAAACTAGGCTCTTGGTTGTGCAGGAGCCTTGGTG-ACCAT
1 TGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG-GCACCAT
* * * *
68178221 CAGC-ACCT-TGCTGCTCGGAT-G
65 CGGCAACCTAGGC-CCTTGG-TCG
* * ** ** *
68178242 TGCGGGAGCCTTGGGCACCATCGGC-ACCTTGGTGCAAGGAT-GTGCGAGAGCCTC-GGCACCAT
1 TGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCAT
* * *
68178304 TGGCAACTTAGGACCTTGGTCG
65 CGGCAACCTAGGCCCTTGGTCG
* * * *
68178326 TACGGGAGCCTCGGGCACCACCGGCAACCTAGGCCCTTGATCGTACGGGAGCCTCGGGCACCATC
1 TGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATC
*
68178391 GGTAACCTAGGCCCTTGGTCG
66 GGCAACCTAGGCCCTTGGTCG
* * * *
68178412 TACGAGAGCCTC-GGCACCATCCGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATC
1 TGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATC
*
68178476 -GAAACCTAGGCCC-TGGTCG
66 GGCAACCTAGGCCCTTGGTCG
* * * * * *
68178495 TTCGGGAGCCTCAGACACCATCGGC-ACCTTGGCGCTTGGAT-GTACGGGAGCCTCGGACACCTC
1 TGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTC-G-------
* * *
68178558 GGACACCATCGGCAAACTAGGCTCTTGGTTG
57 GG-CACCATCGGCAACCTAGGCCCTTGGTCG
* * ** * * * *
68178589 TGCAGGAGCCTTGGTAACCATCAGC-ACCT-TGCTGCTTGGAT-GTGCGGGAGCCTTGGGCACCA
1 TGCGGGAGCCTCGGGCACCATCGGCAACCTAGGC-CCTTGG-TCGTGCGGGAGCCTCGGGCACCA
* * ** **
68178651 TCGAC-ACCTTGGTGCAAGGAT-G
64 TCGGCAACCTAGGCCCTTGG-TCG
* * * * *
68178673 TGCGAGG-GCCTC-GGCACCATTGGCAACTTAGGACCTTGGTCGTACGGGAGCCTCGGGCACCAC
1 TGCG-GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCAT
* *
68178736 CGGCAACCTAGGCCCTCGATCG
65 CGGCAACCTAGGCCCTTGGTCG
* * *
68178758 TACGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGACACCATC
1 TGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATC
*
68178823 GACAACCTAGGCCCTTGGTCG
66 GGCAACCTAGGCCCTTGGTCG
* * * * * * *
68178844 TACGGGAGCCTCGGACACCATCGGC-ACCTTGGCGCTTGGAT-GTACGGGAGCCTCAGACACCAT
1 TGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCAT
*
68178907 CGGTAACCTAGGCCCTTGGAT-G
65 CGGCAACCTAGGCCCTTGG-TCG
* * * * * * * *
68178929 TGCGGAATCCTCAGACACCATCGGCAACCTAGGCCCTTGGTCATGCGAGAGCCTC-GGTATCATC
1 TGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATC
* *
68178993 GGCAATCTAGGCCCCTGGTCG
66 GGCAACCTAGGCCCTTGGTCG
* * * *
68179014 TGCGGGAGCGTC-GGTACCATCGGCAACCTAGGACCC-TGGTCGTGCGGGATCCTTGGGCACCAT
1 TGCGGGAGCCTCGGGCACCATCGGCAACCTAGG-CCCTTGGTCGTGCGGGAGCCTCGGGCACCAT
68179077 CGGCAACCTAGGCCC-TGGTCG
65 CGGCAACCTAGGCCCTTGGTCG
* *
68179098 TGCGAGAGCCTCGGGCACCATCGGC-ACCTAGGCCCCTGGTCGTGCGGGAGCCTC-GGCACCATC
1 TGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATC
*
68179161 GGCAACCTAAGCCC-TGGTCG
66 GGCAACCTAGGCCCTTGGTCG
** ** * *
68179181 TGCGGGAGCCTCGGGCACCATC-GC-ACCTTCGTGCTTGGAT-GTACGGGAGCCTCGGACACCAT
1 TGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCAT
*
68179243 CGACAACCTAGGCCCTTGGTCG
65 CGGCAACCTAGGCCCTTGGTCG
* * * * *
68179265 TGTGGGAGCCTC-GGCACCATCGGTAACCTAAGCCCTTGGTCATGCGGGAGCCTCGGGCACCACC
1 TGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATC
** *
68179329 GGC-ACCT-TCCTGCCTCGGAT-G
66 GGCAACCTAGGC--CCTTGG-TCG
* * * * ** *
68179350 TGCGGGAGCCTCGAGCAGCATTGGC-ACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGGACACCAT
1 TGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCAT
*
68179413 AGGCAACCTAGG
65 CGGCAACCTAGG
68179425 ATGTTGGATG
Statistics
Matches: 950, Mismatches: 180, Indels: 104
0.77 0.15 0.08
Matches are distributed among these distances:
82 24 0.03
83 141 0.15
84 217 0.23
85 337 0.35
86 164 0.17
91 1 0.00
92 7 0.01
93 13 0.01
94 46 0.05
ACGTcount: A:0.18, C:0.32, G:0.31, T:0.19
Consensus pattern (86 bp):
TGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATC
GGCAACCTAGGCCCTTGGTCG
Found at i:68188327 original size:43 final size:43
Alignment explanation
Indices: 68188193--68188804 Score: 832
Period size: 43 Copynumber: 14.6 Consensus size: 43
68188183 GGTCTCGGAT
* ** **
68188193 GTGCGGGAGCCTTGGGCACCATCGGC-ACCT-GGTGCAAGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TC
* * *
68188234 GTGCGAGAGCCTC-GGCACCATTGGCAACCTA-GACCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
*
68188275 GTACGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
*
68188318 GTACGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
*
68188361 GTGCGAGAGCCTC-GGCACCATC-GCAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
*
68188402 GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* *
68188445 GTACGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TC
* * *
68188488 GTGC-GAAGCCTCGGACACCATCGGCAACCTAGGCCCCTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
68188530 GTGC-GGAGCCTC-GGCACCATCGGCAACCTAGGCCC-TGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
*
68188570 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
*
68188613 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
68188656 GTGC-GGAGCCTCGGGCACCATC-GC-ACCTAGGCCC-TGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
** **
68188695 GTGCGGGAGCCTCGGGCACCATCGGC-ACCTTCGTGCTTGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TC
* *
68188737 GTACGGGAGCCTC-GGCACCATCGGTAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
68188779 -TGCGGGAGCCTCGGGCACCATCGGCA
1 GTGCGGGAGCCTCGGGCACCATCGGCA
68188805 CCTTGCTGCC
Statistics
Matches: 519, Mismatches: 33, Indels: 37
0.88 0.06 0.06
Matches are distributed among these distances:
39 9 0.02
40 49 0.09
41 125 0.24
42 157 0.30
43 178 0.34
44 1 0.00
ACGTcount: A:0.16, C:0.35, G:0.33, T:0.16
Consensus pattern (43 bp):
GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
Found at i:68188398 original size:127 final size:127
Alignment explanation
Indices: 68188196--68188804 Score: 859
Period size: 127 Copynumber: 4.9 Consensus size: 127
68188186 CTCGGATGTG
* ** ** *
68188196 CGGGAGCCTTGGGCACCATCGGC-ACCT-GGTGCAAGGATGTGCGAGAGCCTCGGCACCATTGGC
1 CGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGATGTGCGAGAGCCTCGGCACCATCGGC
* *
68188259 AACCTA-GACCTTGGTCGTACGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTA
66 AACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCC-TGGTCGTA
68188321 CGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGAGAGCCTCGGCACCATC-G
1 CGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGAT-GTGCGAGAGCCTCGGCACCATCGG
*
68188384 CAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTA
65 CAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCC-TGGTCGTA
*
68188448 CGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGATGTGCGA-AGCCTCGGACACCATCGG
1 CGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGATGTGCGAGAGCCTCGG-CACCATCGG
* *
68188512 CAACCTAGGCCCCTGGTCGTGC-GGAGCCTC-GGCACCATCGGCAACCTAGGCCCTGGTCGTG
65 CAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTGGTCGTA
* *
68188573 CGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGG-TCGTGCGGGAGCCTCGGGCACCATCG
1 CGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGAT-GTGCGAGAGCCTC-GGCACCATCG
* *
68188637 GCAACCTAGGCCCCTGGTCGTGC-GGAGCCTCGGGCACCATC-GC-ACCTAGGCCCTGGTCGTG
64 GCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTGGTCGTA
** ** * * *
68188698 CGGGAGCCTCGGGCACCATCGGC-ACCTTCGTGCTTGGATGTACGGGAGCCTCGGCACCATCGGT
1 CGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGATGTGCGAGAGCCTCGGCACCATCGGC
68188762 AACCTAGGCCCTTGGTC-TGCGGGAGCCTCGGGCACCATCGGCA
66 AACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
68188805 CCTTGCTGCC
Statistics
Matches: 445, Mismatches: 24, Indels: 30
0.89 0.05 0.06
Matches are distributed among these distances:
122 3 0.01
123 45 0.10
124 24 0.05
125 112 0.25
126 90 0.20
127 148 0.33
128 23 0.05
ACGTcount: A:0.16, C:0.35, G:0.33, T:0.16
Consensus pattern (127 bp):
CGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGATGTGCGAGAGCCTCGGCACCATCGGC
AACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTGGTCGTA
Found at i:68196352 original size:174 final size:180
Alignment explanation
Indices: 68196028--68196379 Score: 511
Period size: 174 Copynumber: 2.0 Consensus size: 180
68196018 GTAAGGAGTT
* * * *
68196028 AGTTAAACACTTGGCCTTGCCGCCCCCTCGGGAATATGGCACAACGGGGGCCGTGGTGGTGCGAG
1 AGTTAAACACTTGACCGTGCCGCCCCCTCGGGAACATGGCACAACGGGGGCCGCGGTGGTGCGAG
* * *
68196093 TGCGAGCTCCCAACTGTTGGTGGTCCGGGCACTTGTTCAATTTTCTGCCGTGCCGTGCCGTGCCA
66 TGCGAGCTCCCAACTGTTGGTGGTCCGGGCACTTGTTCAATTTTCTGCCATGCCAT-CCATGCCA
* *
68196158 TACTTCATTCGGCCTCTTGTATTTGTTTTGGGCGAACAGAAAAAATTTCTA
130 TACTTCATTCGGCCTCTTGTATTTCTTTTGGGCCAACAGAAAAAATTTCTA
* *
68196209 AGTTAGACACTTGACCGTGCCGCCCCCTCGGGAAACATGGCACAAC-GGGG-CGCGGTGGTGCGG
1 AGTTAAACACTTGACCGTGCCGCCCCCTCGGG-AACATGGCACAACGGGGGCCGCGGTGGTGCGA
68196272 GTGC-AGCT-CCAACTGTTGGTGGTCC-GGCACTTGTTCAATTTTCT-CCATGCCAT-CATGCCA
65 GTGCGAGCTCCCAACTGTTGGTGGTCCGGGCACTTGTTCAATTTTCTGCCATGCCATCCATGCCA
* * *
68196332 TATTTCATTCGGCTTCTTGTATTTCTTTTGGGCCAACAGGAAAAATTT
130 TACTTCATTCGGCCTCTTGTATTTCTTTTGGGCCAACAGAAAAAATTT
68196380 TCAATTAAAA
Statistics
Matches: 156, Mismatches: 14, Indels: 9
0.87 0.08 0.05
Matches are distributed among these distances:
174 49 0.31
176 7 0.04
177 19 0.12
178 17 0.11
179 4 0.03
180 15 0.10
181 33 0.21
182 12 0.08
ACGTcount: A:0.18, C:0.26, G:0.27, T:0.28
Consensus pattern (180 bp):
AGTTAAACACTTGACCGTGCCGCCCCCTCGGGAACATGGCACAACGGGGGCCGCGGTGGTGCGAG
TGCGAGCTCCCAACTGTTGGTGGTCCGGGCACTTGTTCAATTTTCTGCCATGCCATCCATGCCAT
ACTTCATTCGGCCTCTTGTATTTCTTTTGGGCCAACAGAAAAAATTTCTA
Found at i:68196777 original size:22 final size:23
Alignment explanation
Indices: 68196735--68196777 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
68196725 CCGGAGGTGC
*
68196735 TCCGACGATCCATCCCGGGATGA
1 TCCGACGAGCCATCCCGGGATGA
*
68196758 TCCGGCGAGCCAT-CCGGGAT
1 TCCGACGAGCCATCCCGGGAT
68196778 ATACAAAACG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 7 0.39
23 11 0.61
ACGTcount: A:0.19, C:0.35, G:0.30, T:0.16
Consensus pattern (23 bp):
TCCGACGAGCCATCCCGGGATGA
Found at i:68197756 original size:40 final size:41
Alignment explanation
Indices: 68197705--68197808 Score: 124
Period size: 40 Copynumber: 2.5 Consensus size: 41
68197695 GGCTCTTGGT
*
68197705 TGTGCAGGAGCCTCGGTG-ACCATCAGCACCTTGGTGC-TCGA
1 TGTGC-GGAGCCTCGG-GCACCATCAGCACCTTGGTGCAACGA
* * *
68197746 TGTGCGGAGCCTTGGGCACCATCGGCACCTTGGTGCAAGGA
1 TGTGCGGAGCCTCGGGCACCATCAGCACCTTGGTGCAACGA
68197787 TGTGCGAGAGCCTC-GGCACCAT
1 TGTGCG-GAGCCTCGGGCACCAT
68197809 GGCAACCTAG
Statistics
Matches: 55, Mismatches: 5, Indels: 6
0.83 0.08 0.09
Matches are distributed among these distances:
39 1 0.02
40 27 0.49
41 21 0.38
42 6 0.11
ACGTcount: A:0.17, C:0.29, G:0.34, T:0.20
Consensus pattern (41 bp):
TGTGCGGAGCCTCGGGCACCATCAGCACCTTGGTGCAACGA
Found at i:68197839 original size:41 final size:42
Alignment explanation
Indices: 68197788--68198639 Score: 1008
Period size: 41 Copynumber: 20.8 Consensus size: 42
68197778 GTGCAAGGAT
* *
68197788 GTGCGAGAGCCTCGGCACCAT-GGCAACCTAGGACCTTGGTC
1 GTGCGGGAGCCTCGGCACCATCGGCAACCTAGGCCCTTGGTC
*
68197829 GTACGGGAGCCTCGGGCACCATCGGCAA-CTAGGCCCTTGGTC
1 GTGCGGGAGCCTC-GGCACCATCGGCAACCTAGGCCCTTGGTC
*
68197871 GTAC-GGAGCCTCGGGCACCAT-GGCAACCTAGG-CCTTGGTC
1 GTGCGGGAGCCTC-GGCACCATCGGCAACCTAGGCCCTTGGTC
* *
68197911 G-GCGAGAGCCTCGGCACCATCCGCAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGCACCATCGGCAACCTAGGCCCTTGGTC
68197952 GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGG-CACCATCGGCAACCTAGGCCCTTGGTC
*
68197995 GTACGGGAGCCTCGGACACCATCGG-AACCTAGGCCCTTGGAT-
1 GTGCGGGAGCCTCGG-CACCATCGGCAACCTAGGCCCTTGG-TC
68198037 GTGC-GGAGCCTCGGACACCATCGGCAA-CTAGG-CCTTGGT-
1 GTGCGGGAGCCTCGG-CACCATCGGCAACCTAGGCCCTTGGTC
68198076 GTGC-GGAG-CTC-GCACCATCGGCAACCTAGGCCC-TGGTC
1 GTGCGGGAGCCTCGGCACCATCGGCAACCTAGGCCCTTGGTC
* *
68198114 GTGCGAGAGCCTCGGCACCATCGGCAACCTA-GCCCCTGGTC
1 GTGCGGGAGCCTCGGCACCATCGGCAACCTAGGCCCTTGGTC
*
68198155 GTGCGGGAGCCTCGGCACCATCGGCAACCTAGGCCCCTGGTC
1 GTGCGGGAGCCTCGGCACCATCGGCAACCTAGGCCCTTGGTC
*
68198197 GTGCGGGAGCCTCGGGCACCATCGGCAACCTA-GCCCCTGGTC
1 GTGCGGGAGCCTC-GGCACCATCGGCAACCTAGGCCCTTGGTC
68198239 GTGC-GGAG-CT-GGCA-CATCGG-AACCTAGGCCC-TGGTC
1 GTGCGGGAGCCTCGGCACCATCGGCAACCTAGGCCCTTGGTC
68198275 GTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCC-TGGTC
1 GTGCGGGAGCCTC-GGCACCATCGGCAACCTAGGCCCTTGGTC
*
68198316 GTGCGAGAGCCTCGGCACCATCGGC-ACCTAGGCCC-TGGTC
1 GTGCGGGAGCCTCGGCACCATCGGCAACCTAGGCCCTTGGTC
*
68198356 GTGCGGGAGCCTCGGGCACCATCGG-AACCTAGGCCCCTGGTC
1 GTGCGGGAGCCTC-GGCACCATCGGCAACCTAGGCCCTTGGTC
** **
68198398 GT-C-GGAGCCTCGGGCACCATCGGC-ACCTTCGTGCTTGGAT-
1 GTGCGGGAGCCTC-GGCACCATCGGCAACCTAGGCCCTTGG-TC
*
68198438 GTACGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGG-CACCATCGGCAACCTAGGCCCTTGGTC
*
68198481 GTGCGGGAGCCTCGGCACCATCGGTAACCTAGG-CCTTGGTC
1 GTGCGGGAGCCTCGGCACCATCGGCAACCTAGGCCCTTGGTC
* ** *
68198522 ATGCGGGAGCCTCGGGCACCATCGGC-ACCTTCTG-CCTCGGAT-
1 GTGCGGGAGCCTC-GGCACCATCGGCAACC-TAGGCCCTTGG-TC
* * * **
68198564 GTGCGGGAGCCTCGAGCAGCATTGGC-ACCTTGGTGCTTGGAT-
1 GTGCGGGAGCCTCG-GCACCATCGGCAACCTAGGCCCTTGG-TC
*
68198606 GTGCGGGAGCCTCGGACACCATAGGCAACCTAGG
1 GTGCGGGAGCCTCGG-CACCATCGGCAACCTAGG
68198640 ACGTTGGATG
Statistics
Matches: 728, Mismatches: 40, Indels: 84
0.85 0.05 0.10
Matches are distributed among these distances:
36 27 0.04
37 24 0.03
38 15 0.02
39 21 0.03
40 120 0.16
41 209 0.29
42 207 0.28
43 105 0.14
ACGTcount: A:0.16, C:0.34, G:0.33, T:0.17
Consensus pattern (42 bp):
GTGCGGGAGCCTCGGCACCATCGGCAACCTAGGCCCTTGGTC
Found at i:68197861 original size:42 final size:43
Alignment explanation
Indices: 68197788--68198639 Score: 1015
Period size: 42 Copynumber: 20.8 Consensus size: 43
68197778 GTGCAAGGAT
* *
68197788 GTGCGAGAGCCTC-GGCACCAT-GGCAACCTAGGACCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
*
68197829 GTACGGGAGCCTCGGGCACCATCGGCAA-CTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
*
68197871 GTAC-GGAGCCTCGGGCACCAT-GGCAACCTAGG-CCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* *
68197911 G-GCGAGAGCCTC-GGCACCATCCGCAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
*
68197952 GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* *
68197995 GTACGGGAGCCTCGGACACCATCGG-AACCTAGGCCCTTGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TC
*
68198037 GTGC-GGAGCCTCGGACACCATCGGCAA-CTAGG-CCTTGGT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
68198076 GTGC-GGAG-CTC--GCACCATCGGCAACCTAGGCCC-TGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* *
68198114 GTGCGAGAGCCTC-GGCACCATCGGCAACCTA-GCCCCTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
*
68198155 GTGCGGGAGCCTC-GGCACCATCGGCAACCTAGGCCCCTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
*
68198197 GTGCGGGAGCCTCGGGCACCATCGGCAACCTA-GCCCCTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
68198239 GTGC-GGAG-CT--GGCA-CATCGG-AACCTAGGCCC-TGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
68198275 GTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCC-TGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
*
68198316 GTGCGAGAGCCTC-GGCACCATCGGC-ACCTAGGCCC-TGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
*
68198356 GTGCGGGAGCCTCGGGCACCATCGG-AACCTAGGCCCCTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
** **
68198398 GT-C-GGAGCCTCGGGCACCATCGGC-ACCTTCGTGCTTGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TC
* *
68198438 GTACGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
*
68198481 GTGCGGGAGCCTC-GGCACCATCGGTAACCTAGG-CCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* ** *
68198522 ATGCGGGAGCCTCGGGCACCATCGGC-ACCTTCTG-CCTCGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACC-TAGGCCCTTGG-TC
* * * * **
68198564 GTGCGGGAGCCTCGAGCAGCATTGGC-ACCTTGGTGCTTGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TC
* *
68198606 GTGCGGGAGCCTCGGACACCATAGGCAACCTAGG
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGG
68198640 ACGTTGGATG
Statistics
Matches: 724, Mismatches: 47, Indels: 78
0.85 0.06 0.09
Matches are distributed among these distances:
36 27 0.04
37 23 0.03
38 15 0.02
39 21 0.03
40 120 0.17
41 205 0.28
42 209 0.29
43 104 0.14
ACGTcount: A:0.16, C:0.34, G:0.33, T:0.17
Consensus pattern (43 bp):
GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
Found at i:68198682 original size:84 final size:85
Alignment explanation
Indices: 68197747--68198697 Score: 724
Period size: 84 Copynumber: 11.6 Consensus size: 85
68197737 GGTGCTCGAT
* * * ** *
68197747 GTGC-GGAGCCTTGGGCACCATCGGCACCTTGGTGCAAGGATGTGCGAGAGCCTCGG-CACCAT-
1 GTGCGGGAGCCTCGAGCACCATGGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGGACACCATC
*
68197809 GGCAACCTAGGACCTTGGTC
66 GGCAACCTAGGCCCTTGGTC
* * * * * ** * *
68197829 GTACGGGAGCCTCGGGCACCATCGGCAACTAGGCCCTTGG-TCGTAC-GGAGCCTCGGGCACCAT
1 GTGCGGGAGCCTCGAGCACCATGGGCACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGGACACCAT
68197892 -GGCAACCTAGG-CCTTGGTC
65 CGGCAACCTAGGCCCTTGGTC
* ** * **
68197911 G-GCGAGAGCCTCG-GCACCATCCGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGACACCA
1 GTGCGGGAGCCTCGAGCACCATGGGC-ACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGGACACCA
68197973 TCGGCAACCTAGGCCCTTGGTC
64 TCGGCAACCTAGGCCCTTGGTC
* * * * **
68197995 GTACGGGAGCCTCG-GACACCATCGGAACCTAGGCCCTTGGATGTGC-GGAGCCTCGGACACCAT
1 GTGCGGGAGCCTCGAG-CACCATGGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGGACACCAT
68198058 CGGCAA-CTAGG-CCTTGGT-
65 CGGCAACCTAGGCCCTTGGTC
* * * * *
68198076 GTGC-GGAG-CTC--GCACCATCGGCAACCTAGG-CCCTGG-TCGTGCGAGAGCCTCGG-CACCA
1 GTGCGGGAGCCTCGAGCACCATGGGC-ACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGGACACCA
*
68198134 TCGGCAACCTA-GCCCCTGGTC
64 TCGGCAACCTAGGCCCTTGGTC
* * ** * *
68198155 GTGCGGGAGCCTCG-GCACCATCGGCAACCTAGGCCCCTGG-TCGTGCGGGAGCCTCGGGCACCA
1 GTGCGGGAGCCTCGAGCACCATGGGC-ACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGGACACCA
*
68198218 TCGGCAACCTA-GCCCCTGGTC
64 TCGGCAACCTAGGCCCTTGGTC
* * * * * *
68198239 GTGC-GGAG-CT-G-GCA-CATCGGAACCTAGG-CCCTGG-TCGTGCGGGAGCCTCGGGCACCAT
1 GTGCGGGAGCCTCGAGCACCATGGGCACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGGACACCAT
68198297 CGGC-ACCTAGGCCC-TGGTC
65 CGGCAACCTAGGCCCTTGGTC
* * * * * *
68198316 GTGCGAGAGCCTCG-GCACCATCGGCACCTAGG-CCCTGG-TCGTGCGGGAGCCTCGGGCACCAT
1 GTGCGGGAGCCTCGAGCACCATGGGCACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGGACACCAT
*
68198378 CGG-AACCTAGGCCCCTGGTC
65 CGGCAACCTAGGCCCTTGGTC
* * * *
68198398 GT-C-GGAGCCTCGGGCACCATCGGCACCTTCGTGCTTGGATGTACGGGAGCCTCGGACACCATC
1 GTGCGGGAGCCTCGAGCACCATGGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGGACACCATC
68198461 GGCAACCTAGGCCCTTGGTC
66 GGCAACCTAGGCCCTTGGTC
** * * * *
68198481 GTGCGGGAGCCTCG-GCACCATCGGTAACCTAGG-CCTTGG-TCATGCGGGAGCCTCGGGCACCA
1 GTGCGGGAGCCTCGAGCACCAT-GGGCACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGGACACCA
** *
68198543 TCGGC-ACCTTCTG-CCTCGGAT-
64 TCGGCAACC-TAGGCCCTTGG-TC
* * *
68198564 GTGCGGGAGCCTCGAGCAGCATTGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGGACACCATA
1 GTGCGGGAGCCTCGAGCACCATGGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGGACACCATC
* *
68198629 GGCAACCTAGGACGTTGGAT-
66 GGCAACCTAGGCCCTTGG-TC
* * *
68198649 GTGC-GGATGCCTCGAGCAGCAGGGGCACC-TGGTGCCTCGGATGTGCGGG
1 GTGCGGGA-GCCTCGAGCACCATGGGCACCTTGGTG-CTTGGATGTGCGGG
68198698 CTAAAGAAAA
Statistics
Matches: 759, Mismatches: 65, Indels: 87
0.83 0.07 0.10
Matches are distributed among these distances:
76 1 0.00
77 45 0.06
78 67 0.09
79 16 0.02
80 36 0.05
81 111 0.15
82 100 0.13
83 139 0.18
84 145 0.19
85 90 0.12
86 9 0.01
ACGTcount: A:0.16, C:0.33, G:0.34, T:0.17
Consensus pattern (85 bp):
GTGCGGGAGCCTCGAGCACCATGGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGGACACCATC
GGCAACCTAGGCCCTTGGTC
Found at i:68211634 original size:37 final size:37
Alignment explanation
Indices: 68211593--68211666 Score: 130
Period size: 37 Copynumber: 2.0 Consensus size: 37
68211583 ACAGGGACTC
*
68211593 TATAAGCTTAAACAATTAATTGTAAAATTATAATTAA
1 TATAAGCTTAAACAATTAATTGCAAAATTATAATTAA
*
68211630 TATAAGCTTAAACAATTAGTTGCAAAATTATAATTAA
1 TATAAGCTTAAACAATTAATTGCAAAATTATAATTAA
68211667 CAATTTGATG
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.50, C:0.07, G:0.07, T:0.36
Consensus pattern (37 bp):
TATAAGCTTAAACAATTAATTGCAAAATTATAATTAA
Found at i:68212347 original size:16 final size:18
Alignment explanation
Indices: 68212326--68212369 Score: 56
Period size: 19 Copynumber: 2.5 Consensus size: 18
68212316 ATGTTAAATC
*
68212326 ATTTGAT-TGA-AGTCTA
1 ATTTGATATGATAGTATA
68212342 ATTTGAATATGATAGTATA
1 ATTTG-ATATGATAGTATA
68212361 ATTTGATAT
1 ATTTGATAT
68212370 ACTTTAAATG
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
16 5 0.21
17 2 0.08
18 7 0.29
19 10 0.42
ACGTcount: A:0.36, C:0.02, G:0.16, T:0.45
Consensus pattern (18 bp):
ATTTGATATGATAGTATA
Found at i:68214003 original size:43 final size:43
Alignment explanation
Indices: 68213946--68214113 Score: 203
Period size: 43 Copynumber: 3.9 Consensus size: 43
68213936 GGGTGTTATA
* * *
68213946 GTGTGACAGTATATTTTCTTC-GATTTATCCGATGATGCACTGT
1 GTGTGCCAGTATATTTTCTTCAG-TTTATCCAATGATGCACTAT
* *
68213989 GTGTGCCAGCATATTTTCTTCAGTTTATCCGATGATGCACTAT
1 GTGTGCCAGTATATTTTCTTCAGTTTATCCAATGATGCACTAT
* *
68214032 GTGTGCTAGTATATTTTCTTCAGTTTATCCAATGACGCACTAT
1 GTGTGCCAGTATATTTTCTTCAGTTTATCCAATGATGCACTAT
* * ** * *
68214075 ATGTTCCAGTATAGATACTTCAATTTATCCAATGATGCA
1 GTGTGCCAGTATATTTTCTTCAGTTTATCCAATGATGCA
68214114 TTATATATGC
Statistics
Matches: 109, Mismatches: 15, Indels: 2
0.87 0.12 0.02
Matches are distributed among these distances:
43 108 0.99
44 1 0.01
ACGTcount: A:0.24, C:0.18, G:0.17, T:0.40
Consensus pattern (43 bp):
GTGTGCCAGTATATTTTCTTCAGTTTATCCAATGATGCACTAT
Found at i:68214096 original size:86 final size:86
Alignment explanation
Indices: 68213953--68214197 Score: 260
Period size: 86 Copynumber: 2.8 Consensus size: 86
68213943 ATAGTGTGAC
* * * ** *
68213953 AGTATATTTTCTTCGATTTATCCGATGATGCACTGTGTGTGCCAGCATATTTTCTTCAGTTTATC
1 AGTATATTTTCTTCGATTTATCCGATGATGCACTGTATGTTCCAGTATAGATACTTCAGTTTATC
* *
68214018 CGATGATGCACTATGTGTGCT
66 CGATGATGCACTATATATGCT
* * * *
68214039 AGTATATTTTCTTC-AGTTTATCCAATGACGCACTATATGTTCCAGTATAGATACTTCAATTTAT
1 AGTATATTTTCTTCGA-TTTATCCGATGATGCACTGTATGTTCCAGTATAGATACTTCAGTTTAT
* *
68214103 CCAATGATGCATTATATATGCT
65 CCGATGATGCACTATATATGCT
** * * * ** *
68214125 AGTATAGATACTTTGCTTTATTTGATGATGCACTGTAT-TTGCTAGTATAGATACTTCAGTTTAT
1 AGTATATTTTCTTCGATTTATCCGATGATGCACTGTATGTT-CCAGTATAGATACTTCAGTTTAT
68214189 CCGATGATG
65 CCGATGATG
68214198 AGATGCTTCA
Statistics
Matches: 129, Mismatches: 27, Indels: 6
0.80 0.17 0.04
Matches are distributed among these distances:
85 3 0.02
86 126 0.98
ACGTcount: A:0.25, C:0.16, G:0.17, T:0.42
Consensus pattern (86 bp):
AGTATATTTTCTTCGATTTATCCGATGATGCACTGTATGTTCCAGTATAGATACTTCAGTTTATC
CGATGATGCACTATATATGCT
Found at i:68214119 original size:43 final size:43
Alignment explanation
Indices: 68213969--68214197 Score: 226
Period size: 43 Copynumber: 5.3 Consensus size: 43
68213959 TTTTCTTCGA
* * * * ** *
68213969 TTTATCCGATGATGCACTGTGTGTGCCAGCATATTTTCTTCAG
1 TTTATCCGATGATGCACTATATGTGCTAGTATAGATACTTCAG
* ** *
68214012 TTTATCCGATGATGCACTATGTGTGCTAGTATATTTTCTTCAG
1 TTTATCCGATGATGCACTATATGTGCTAGTATAGATACTTCAG
* * * * *
68214055 TTTATCCAATGACGCACTATATGTTCCAGTATAGATACTTCAA
1 TTTATCCGATGATGCACTATATGTGCTAGTATAGATACTTCAG
* * * *
68214098 TTTATCCAATGATGCATTATATATGCTAGTATAGATACTT-TG
1 TTTATCCGATGATGCACTATATGTGCTAGTATAGATACTTCAG
** * *
68214140 CTTTATTTGATGATGCACTGTATTTGCTAGTATAGATACTTCAG
1 -TTTATCCGATGATGCACTATATGTGCTAGTATAGATACTTCAG
68214184 TTTATCCGATGATG
1 TTTATCCGATGATG
68214198 AGATGCTTCA
Statistics
Matches: 156, Mismatches: 28, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
43 155 0.99
44 1 0.01
ACGTcount: A:0.25, C:0.17, G:0.17, T:0.41
Consensus pattern (43 bp):
TTTATCCGATGATGCACTATATGTGCTAGTATAGATACTTCAG
Found at i:68214207 original size:25 final size:25
Alignment explanation
Indices: 68214173--68214222 Score: 82
Period size: 25 Copynumber: 2.0 Consensus size: 25
68214163 TTGCTAGTAT
*
68214173 AGATACTTCAGTTTATCCGATGATG
1 AGATACTTCAATTTATCCGATGATG
*
68214198 AGATGCTTCAATTTATCCGATGATG
1 AGATACTTCAATTTATCCGATGATG
68214223 CACTGTATGT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.28, C:0.16, G:0.20, T:0.36
Consensus pattern (25 bp):
AGATACTTCAATTTATCCGATGATG
Found at i:68214286 original size:111 final size:111
Alignment explanation
Indices: 68214087--68214300 Score: 263
Period size: 111 Copynumber: 1.9 Consensus size: 111
68214077 GTTCCAGTAT
* * * **
68214087 AGATACTTCAATTTATCCAATGATGCATTATATATGCTAGTATAGATACTTTGCTTTATTTGATG
1 AGATACTTCAATTTATCCAATGATGCACTATATATGCCAGTATAGATACTTTGCGTTATCCGATG
* *
68214152 ATGCACTGTATTTGCTAGTATAGATACTTCAGTTTATCCGATGATG
66 ATGCACTGTATATGCTAGTATAGATACTTCAATTTATCCGATGATG
* * * *
68214198 AGATGCTTCAATTTATCCGATGATGCACTGTATGTGCCAGTATAGATA-TTT-CAGGTTATCCGA
1 AGATACTTCAATTTATCCAATGATGCACTATATATGCCAGTATAGATACTTTGC--GTTATCCGA
* *
68214261 TTATGCATTGTATATG-TCAGTATAGATACTTCAATTTATC
64 TGATGCACTGTATATGCT-AGTATAGATACTTCAATTTATC
68214301 TAATTATGCA
Statistics
Matches: 87, Mismatches: 13, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
109 1 0.01
110 4 0.05
111 82 0.94
ACGTcount: A:0.29, C:0.14, G:0.17, T:0.40
Consensus pattern (111 bp):
AGATACTTCAATTTATCCAATGATGCACTATATATGCCAGTATAGATACTTTGCGTTATCCGATG
ATGCACTGTATATGCTAGTATAGATACTTCAATTTATCCGATGATG
Found at i:68214322 original size:43 final size:43
Alignment explanation
Indices: 68214198--68214323 Score: 162
Period size: 43 Copynumber: 2.9 Consensus size: 43
68214188 TCCGATGATG
* * *
68214198 AGATGCTTCAATTTATCCGATGATGCACTGTATGTGCCAGTAT
1 AGATACTTCAATTTATCCGATTATGCACTGTATGTGTCAGTAT
* ** * *
68214241 AGATATTTCAGGTTATCCGATTATGCATTGTATATGTCAGTAT
1 AGATACTTCAATTTATCCGATTATGCACTGTATGTGTCAGTAT
**
68214284 AGATACTTCAATTTATCTAATTATGCACTGTATGTGTCAG
1 AGATACTTCAATTTATCCGATTATGCACTGTATGTGTCAG
68214324 GATAATTGTG
Statistics
Matches: 68, Mismatches: 15, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
43 68 1.00
ACGTcount: A:0.28, C:0.15, G:0.18, T:0.39
Consensus pattern (43 bp):
AGATACTTCAATTTATCCGATTATGCACTGTATGTGTCAGTAT
Found at i:68216373 original size:40 final size:40
Alignment explanation
Indices: 68216295--68216471 Score: 225
Period size: 40 Copynumber: 4.4 Consensus size: 40
68216285 ACCCAAGTAT
* *
68216295 CTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* **
68216334 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCATGAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
68216374 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
68216414 CTTCGGGACTTAGCCCGGGTATAG-CAACTACTCGCAAAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTA---GCACAAATGC
68216457 CTTCGGGACTTAGCC
1 CTTCGGGACTTAGCC
68216472 TGTAACACCC
Statistics
Matches: 122, Mismatches: 10, Indels: 8
0.87 0.07 0.06
Matches are distributed among these distances:
39 12 0.10
40 85 0.70
41 1 0.01
43 24 0.20
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.24
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:68218062 original size:29 final size:29
Alignment explanation
Indices: 68217999--68218066 Score: 84
Period size: 29 Copynumber: 2.3 Consensus size: 29
68217989 TAATCAACCA
68217999 CGCACACTTAGTGCCATGCACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* * **
68218028 CACACACTTAGTGCGATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
68218057 CGCACACTTA
1 CGCACACTTA
68218067 CCTTTTCCGC
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
28 3 0.09
29 30 0.91
ACGTcount: A:0.28, C:0.29, G:0.15, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:68218207 original size:29 final size:29
Alignment explanation
Indices: 68218173--68218275 Score: 165
Period size: 29 Copynumber: 3.6 Consensus size: 29
68218163 TAATCAACCG
68218173 CGCACACTTAGTGCCATGTACTTTAAACT
1 CGCACACTTAGTGCCATGTACTTTAAACT
68218202 CGCACACTTAGTGCCATGTACTTTAAACT
1 CGCACACTTAGTGCCATGTACTTTAAACT
*
68218231 CGCACACTTAGTG-C-TGTACAATTTAAACC
1 CGCACACTTAGTGCCATGTAC--TTTAAACT
68218260 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
68218276 ATCTCATGAC
Statistics
Matches: 69, Mismatches: 1, Indels: 6
0.91 0.01 0.08
Matches are distributed among these distances:
27 5 0.07
28 1 0.01
29 62 0.90
30 1 0.01
ACGTcount: A:0.28, C:0.29, G:0.15, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGTACTTTAAACT
Found at i:68228982 original size:17 final size:18
Alignment explanation
Indices: 68228960--68228994 Score: 63
Period size: 17 Copynumber: 2.0 Consensus size: 18
68228950 CGAGTGGGCG
68228960 GTTCGCTGCCC-GACGTC
1 GTTCGCTGCCCGGACGTC
68228977 GTTCGCTGCCCGGACGTC
1 GTTCGCTGCCCGGACGTC
68228995 ACGAGAAGTC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 11 0.65
18 6 0.35
ACGTcount: A:0.06, C:0.40, G:0.31, T:0.23
Consensus pattern (18 bp):
GTTCGCTGCCCGGACGTC
Found at i:68234942 original size:42 final size:42
Alignment explanation
Indices: 68234890--68234995 Score: 135
Period size: 42 Copynumber: 2.5 Consensus size: 42
68234880 GGTTCTTGGT
** **
68234890 TGTGCAGGAGCCTCGGTGACCATCAGCACCTTGGTGCTCGGA
1 TGTGCAGGAGCCTCGGACACCATCAGCACCTTGGTGCAAGGA
* *
68234932 TGTGCAGGAGCCTTGGACACCATCGGCACCTTGGTGCAAGGA
1 TGTGCAGGAGCCTCGGACACCATCAGCACCTTGGTGCAAGGA
68234974 TGTGC-GAGAGCCTCGG-CACCAT
1 TGTGCAG-GAGCCTCGGACACCAT
68234996 TGGTAACCTA
Statistics
Matches: 56, Mismatches: 7, Indels: 3
0.85 0.11 0.05
Matches are distributed among these distances:
41 7 0.12
42 49 0.88
ACGTcount: A:0.19, C:0.28, G:0.33, T:0.20
Consensus pattern (42 bp):
TGTGCAGGAGCCTCGGACACCATCAGCACCTTGGTGCAAGGA
Found at i:68235047 original size:43 final size:43
Alignment explanation
Indices: 68234975--68235766 Score: 996
Period size: 43 Copynumber: 18.6 Consensus size: 43
68234965 GTGCAAGGAT
* * * *
68234975 GTGCGAGAGCCTC-GGCACCATTGGTAACCTAGGACCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* *
68235017 GTACGGGAGCCTCGGGCACCATCGACAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* *
68235060 GTACGGGAGCCTTGGGCACCATCGGCAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * **
68235103 ATGCGAGAGCCTC-GGCACCATCCACAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * *
68235145 GTGCGGGAGCCTTGGACAACATCGGCAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * * * *
68235188 GTACGGAAGCCTCGGACACCATCGGC-ACCTTGGCGCTTGAAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTG-GTC
*
68235230 GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TC
* * *
68235273 GTGCGGAAGCCTCGGACACCATCGGCAACCTAGGCACTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * *
68235316 GTGCGGGAGTCTC-GGCTCCATCGGCAACCTAGGCCCCTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * * *
68235358 GTGCGAGAGCCTC-GGCACCATCGACAACCTAGGCCCCTGATC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * *
68235400 GTGCGGGAGCCTC-GGCACCGTCGGC-ACCTAAGCCCCTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
** * *
68235441 GTGCGGGAGTGTCGGGCTCCATCGGCAACCTAGGCCCCTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* * *
68235484 GTGCGGGATCCTCGGGCACCATCGGCGACCTAGGCCCCTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
* *
68235527 GTGCGAGAGCCTCGGGCACCATCGGC-ACCTAGGCCCCTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
*
68235569 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
** **
68235612 GTGCGGGAGCCTCGGGCACCATCGGC-ACCTTCGTGCTTGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TC
* *
68235654 GTACGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
*
68235697 GTGCGGGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
*
68235740 ATGCGGGAGCCTCGGGCACCATCGGCA
1 GTGCGGGAGCCTCGGGCACCATCGGCA
68235767 CCTTGCTGCC
Statistics
Matches: 658, Mismatches: 80, Indels: 23
0.86 0.11 0.03
Matches are distributed among these distances:
41 25 0.04
42 253 0.38
43 380 0.58
ACGTcount: A:0.17, C:0.34, G:0.32, T:0.17
Consensus pattern (43 bp):
GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
Found at i:68235141 original size:85 final size:86
Alignment explanation
Indices: 68234975--68235766 Score: 996
Period size: 85 Copynumber: 9.3 Consensus size: 86
68234965 GTGCAAGGAT
* * * * *
68234975 GTGCGAGAGCCTC-GGCACCATTGGTAACCTAGGACCTTGGTCGTACGGGAGCCTCGGGCACCAT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCAT
*
68235039 CGACAACCTAGGCCCTTGGTC
66 CGGCAACCTAGGCCCTTGGTC
* * * *
68235060 GTACGGGAGCCTTGGGCACCATCGGCAACCTAGGCCCTTGGTCATGCGAGAGCCTC-GGCACCAT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCAT
**
68235124 CCACAACCTAGGCCCTTGGTC
66 CGGCAACCTAGGCCCTTGGTC
* * * * * *
68235145 GTGCGGGAGCCTTGGACAACATCGGCAACCTAGGCCCTTGGTCGTACGGAAGCCTCGGACACCAT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCAT
* * *
68235210 CGGC-ACCTTGGCGCTTGAAT-
66 CGGCAACCTAGGCCCTTG-GTC
* * *
68235230 GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGAT-GTGCGGAAGCCTCGGACACCA
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCA
*
68235294 TCGGCAACCTAGGCACTTGGTC
65 TCGGCAACCTAGGCCCTTGGTC
* * * *
68235316 GTGCGGGAGTCTC-GGCTCCATCGGCAACCTAGGCCCCTGGTCGTGCGAGAGCCTC-GGCACCAT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCAT
* * *
68235379 CGACAACCTAGGCCCCTGATC
66 CGGCAACCTAGGCCCTTGGTC
* * * ** *
68235400 GTGCGGGAGCCTC-GGCACCGTCGGC-ACCTAAGCCCCTGGTCGTGCGGGAGTGTCGGGCTCCAT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCAT
*
68235463 CGGCAACCTAGGCCCCTGGTC
66 CGGCAACCTAGGCCCTTGGTC
* * * *
68235484 GTGCGGGATCCTCGGGCACCATCGGCGACCTAGGCCCCTGGTCGTGCGAGAGCCTCGGGCACCAT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCAT
*
68235549 CGGC-ACCTAGGCCCCTGGTC
66 CGGCAACCTAGGCCCTTGGTC
*
68235569 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCAT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCAT
** **
68235634 CGGC-ACCTTCGTGCTTGGAT-
66 CGGCAACCTAGGCCCTTGG-TC
* *
68235654 GTACGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCAT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCAT
*
68235719 CGGTAACCTAGGCCCTTGGTC
66 CGGCAACCTAGGCCCTTGGTC
*
68235740 ATGCGGGAGCCTCGGGCACCATCGGCA
1 GTGCGGGAGCCTCGGGCACCATCGGCA
68235767 CCTTGCTGCC
Statistics
Matches: 618, Mismatches: 76, Indels: 25
0.86 0.11 0.03
Matches are distributed among these distances:
83 25 0.04
84 85 0.14
85 366 0.59
86 142 0.23
ACGTcount: A:0.17, C:0.34, G:0.32, T:0.17
Consensus pattern (86 bp):
GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCAT
CGGCAACCTAGGCCCTTGGTC
Found at i:68235767 original size:128 final size:130
Alignment explanation
Indices: 68234975--68235796 Score: 1007
Period size: 128 Copynumber: 6.4 Consensus size: 130
68234965 GTGCAAGGAT
* * * * * *
68234975 GTGCGAGAGCCTC-GGCACCATTGGTAACCTAGGACCTTGG-TCGTACGGGAGCCTCGGGCACCA
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGATCGTGCGGGAGCCTCGGACACCA
* * * *
68235038 TCGACAACCTAGGCCCTTGGTCGTACGGGAGCCTTGGGCACCATCGGCAACCTAGGCCCTTGGTC
66 TCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTC
* * ** * *
68235103 ATGCGAGAGCCTC-GGCACCATCCACAACCTAGGCCCTTGG-TCGTGCGGGAGCCTTGGACAACA
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGATCGTGCGGGAGCCTCGGACACCA
* * * * * * *
68235166 TCGGCAACCTAGGCCCTTGGTCGTACGGAAGCCTCGGACACCATCGGC-ACCTTGGCGCTTGAAT
66 TCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTG-GT
68235230 -
130 C
* *
68235230 GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGAT-GTGCGGAAGCCTCGGACACCA
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGATCGTGCGGGAGCCTCGGACACCA
* * *
68235294 TCGGCAACCTAGGCACTTGGTCGTGCGGGAGTCTC-GGCTCCATCGGCAACCTAGGCCCCTGGTC
66 TCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTC
* * * *
68235358 GTGCGAGAGCCTC-GGCACCATCGACAACCTAGGCCCCT-GATCGTGCGGGAGCCTCGG-CACCG
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGATCGTGCGGGAGCCTCGGACACCA
* * ** *
68235420 TCGGC-ACCTAAGCCCCTGGTCGTGCGGGAGTGTCGGGCTCCATCGGCAACCTAGGCCCCTGGTC
66 TCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTC
* * * * *
68235484 GTGCGGGATCCTCGGGCACCATCGGCGACCTAGGCCCCTGG-TCGTGCGAGAGCCTCGGGCACCA
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGATCGTGCGGGAGCCTCGGACACCA
*
68235548 TCGGC-ACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTC
66 TCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTC
** ** *
68235612 GTGCGGGAGCCTCGGGCACCATCGGC-ACCTTCGTGCTTGGAT-GTACGGGAGCCTCGGACACCA
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGATCGTGCGGGAGCCTCGGACACCA
* *
68235675 TCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTC
66 TCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTC
* * *
68235740 ATGCGGGAGCCTCGGGCACCATCGGC-ACCT-TGCTGCCTCGGAT-GTGCGGGAGCCTCG
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGC--CCTTGGATCGTGCGGGAGCCTCG
68235797 AGCAGCATTG
Statistics
Matches: 607, Mismatches: 73, Indels: 27
0.86 0.10 0.04
Matches are distributed among these distances:
125 25 0.04
126 52 0.09
127 141 0.23
128 369 0.61
129 20 0.03
ACGTcount: A:0.16, C:0.34, G:0.32, T:0.17
Consensus pattern (130 bp):
GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGATCGTGCGGGAGCCTCGGACACCA
TCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTC
Found at i:68247615 original size:80 final size:82
Alignment explanation
Indices: 68247394--68248112 Score: 747
Period size: 80 Copynumber: 8.9 Consensus size: 82
68247384 CCTTGGCAAG
* *
68247394 GTGCGAGGAGCCTCGGCACCATCGGCAACCTAGGCCCTTGGTCGTACGGGAGCCTCGGGCACCAT
1 GTGCG-GGAGCCTCGGCACCATCGGCAACCTAGG--CTTGGTCGTGCGGGAGCCTCGGACACCAT
68247459 CGGCAACCTAGGCCCTTGGTC
63 CGGCAACCTAGGCCC-TGGTC
*
68247480 --GCGAGAGCCTCGGCACCATC-GCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATC
1 GTGCGGGAGCCTCGGCACCATCGGCAACCTAGG--CTTGGTCGTGCGGGAGCCTCGGACACCATC
68247542 -GCAACCTAGGCCCTGGTC
64 GGCAACCTAGGCCCTGGTC
* * *
68247560 GTACGGGAGCCTCGGACACCATCGGC-ACCT-GCGCTTGAT-GTACGGGAGCCTCGGACACCATC
1 GTGCGGGAGCCTCGG-CACCATCGGCAACCTAG-GCTTGGTCGTGCGGGAGCCTCGGACACCATC
68247622 GGC-ACCTAGGCCCTTGGT-
64 GGCAACCTAGGCCC-TGGTC
*
68247640 GTGC-GGAGCCTCGGACACCATCGGCAACCTAGGCCCTGGTCGTGC-GGAGCCTCGG-CACCATC
1 GTGCGGGAGCCTCGG-CACCATCGGCAACCTAGG-CTTGGTCGTGCGGGAGCCTCGGACACCATC
68247702 GGCAACCTAGGCCCCT-GTC
64 GGCAACCTAGG-CCCTGGTC
* *
68247721 GTGC-GGAGCCTCGGCACCATCGGCAACCTAGGCCCTGGTCGTGC-GGAG-CTCGG-GACCATCG
1 GTGCGGGAGCCTCGGCACCATCGGCAACCTAGG-CTTGGTCGTGCGGGAGCCTCGGACACCATCG
*
68247782 GCAACCTAGCCCCTGGTC
65 GCAACCTAGGCCCTGGTC
* *
68247800 GTGC-GGA-CCTCGGGCACC-TC-GC-ACCTAGGCCCTGGTCGTGC-GGAGCCTCGGGCACCATC
1 GTGCGGGAGCCTC-GGCACCATCGGCAACCTAGG-CTTGGTCGTGCGGGAGCCTCGGACACCATC
68247859 GGCAACCTAGGCCCTGGTC
64 GGCAACCTAGGCCCTGGTC
* *
68247878 GTGCGGGAGCCTCGGCACCATCGGC-ACCTTCGTGCTTGGAT-GTACGGGAGCCTCGGACACCAT
1 GTGCGGGAGCCTCGGCACCATCGGCAACC-TAG-GCTTGG-TCGTGCGGGAGCCTCGGACACCAT
68247941 CGGCAA-CTAGGCCCTTGGTC
63 CGGCAACCTAGGCCC-TGGTC
*
68247961 GTGCGGGAGCCTCGGGCACCATCGGTAACCTAGGCCTTGGTC-TGC-GGAGCCTCGG-C-CCATC
1 GTGCGGGAGCCTC-GGCACCATCGGCAACCTAGG-CTTGGTCGTGCGGGAGCCTCGGACACCATC
* * *
68248022 GGC-A-CT-TGCTGCTCGAT-
64 GGCAACCTAGGC-CCT-GGTC
* * *
68248039 GTGCGGGAGCCTCGGCAGCATTGGC-ACCTTGGTGCTTGGAT-GTGCGGGAGCCTC-GACACCAT
1 GTGCGGGAGCCTCGGCACCATCGGCAACC-TAG-GCTTGG-TCGTGCGGGAGCCTCGGACACCAT
*
68248101 AGGCAACCTAGG
63 CGGCAACCTAGG
68248113 AGTTGGATGT
Statistics
Matches: 559, Mismatches: 31, Indels: 89
0.82 0.05 0.13
Matches are distributed among these distances:
76 26 0.05
77 23 0.04
78 60 0.11
79 82 0.15
80 112 0.20
81 68 0.12
82 87 0.16
83 75 0.13
84 23 0.04
85 3 0.01
ACGTcount: A:0.16, C:0.35, G:0.33, T:0.17
Consensus pattern (82 bp):
GTGCGGGAGCCTCGGCACCATCGGCAACCTAGGCTTGGTCGTGCGGGAGCCTCGGACACCATCGG
CAACCTAGGCCCTGGTC
Found at i:68247659 original size:40 final size:42
Alignment explanation
Indices: 68247394--68248112 Score: 800
Period size: 41 Copynumber: 17.8 Consensus size: 42
68247384 CCTTGGCAAG
68247394 GTGCGAGGAGCCTCGGCACCATCGGCAACCTAGGCCCTTGGTC
1 GTGCG-GGAGCCTCGGCACCATCGGCAACCTAGGCCCTTGGTC
*
68247437 GTACGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTC-GGCACCATCGGCAACCTAGGCCCTTGGTC
*
68247480 --GCGAGAGCCTCGGCACCATC-GCAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGCACCATCGGCAACCTAGGCCCTTGGTC
68247519 GTGCGGGAGCCTCGGACACCATC-GCAACCTAGGCCC-TGGTC
1 GTGCGGGAGCCTCGG-CACCATCGGCAACCTAGGCCCTTGGTC
* * *
68247560 GTACGGGAGCCTCGGACACCATCGGC-ACCT--GCGCTTGAT-
1 GTGCGGGAGCCTCGG-CACCATCGGCAACCTAGGCCCTTGGTC
*
68247599 GTACGGGAGCCTCGGACACCATCGGC-ACCTAGGCCCTTGGT-
1 GTGCGGGAGCCTCGG-CACCATCGGCAACCTAGGCCCTTGGTC
68247640 GTGC-GGAGCCTCGGACACCATCGGCAACCTAGGCCC-TGGTC
1 GTGCGGGAGCCTCGG-CACCATCGGCAACCTAGGCCCTTGGTC
*
68247681 GTGC-GGAGCCTCGGCACCATCGGCAACCTAGGCCCCT-GTC
1 GTGCGGGAGCCTCGGCACCATCGGCAACCTAGGCCCTTGGTC
68247721 GTGC-GGAGCCTCGGCACCATCGGCAACCTAGGCCC-TGGTC
1 GTGCGGGAGCCTCGGCACCATCGGCAACCTAGGCCCTTGGTC
* *
68247761 GTGC-GGAG-CTCGGGACCATCGGCAACCTA-GCCCCTGGTC
1 GTGCGGGAGCCTCGGCACCATCGGCAACCTAGGCCCTTGGTC
68247800 GTGC-GGA-CCTCGGGCACC-TC-GC-ACCTAGGCCC-TGGTC
1 GTGCGGGAGCCTC-GGCACCATCGGCAACCTAGGCCCTTGGTC
68247837 GTGC-GGAGCCTCGGGCACCATCGGCAACCTAGGCCC-TGGTC
1 GTGCGGGAGCCTC-GGCACCATCGGCAACCTAGGCCCTTGGTC
** **
68247878 GTGCGGGAGCCTCGGCACCATCGGC-ACCTTCGTGCTTGGAT-
1 GTGCGGGAGCCTCGGCACCATCGGCAACCTAGGCCCTTGG-TC
*
68247919 GTACGGGAGCCTCGGACACCATCGGCAA-CTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGG-CACCATCGGCAACCTAGGCCCTTGGTC
*
68247961 GTGCGGGAGCCTCGGGCACCATCGGTAACCTAGG-CCTTGGTC
1 GTGCGGGAGCCTC-GGCACCATCGGCAACCTAGGCCCTTGGTC
* * * *
68248003 -TGC-GGAGCCTCGGC-CCATCGGC-A-CT-TGCTGCTCGAT-
1 GTGCGGGAGCCTCGGCACCATCGGCAACCTAGGC-CCTTGGTC
* * * **
68248039 GTGCGGGAGCCTCGGCAGCATTGGC-ACCTTGGTGCTTGGAT-
1 GTGCGGGAGCCTCGGCACCATCGGCAACCTAGGCCCTTGG-TC
* *
68248080 GTGCGGGAGCCTCGACACCATAGGCAACCTAGG
1 GTGCGGGAGCCTCGGCACCATCGGCAACCTAGG
68248113 AGTTGGATGT
Statistics
Matches: 601, Mismatches: 38, Indels: 75
0.84 0.05 0.11
Matches are distributed among these distances:
35 1 0.00
36 2 0.00
37 25 0.04
38 39 0.06
39 102 0.17
40 134 0.22
41 163 0.27
42 94 0.16
43 41 0.07
ACGTcount: A:0.16, C:0.35, G:0.33, T:0.17
Consensus pattern (42 bp):
GTGCGGGAGCCTCGGCACCATCGGCAACCTAGGCCCTTGGTC
Found at i:68248045 original size:161 final size:164
Alignment explanation
Indices: 68247394--68248112 Score: 884
Period size: 161 Copynumber: 4.5 Consensus size: 164
68247384 CCTTGGCAAG
* * *
68247394 GTGCGAGGAGCCTCGGCACCATCGGCAACCTAGGCCCTTGG-TCGTACGGGAGCCTCGGGCACCA
1 GTGCG-GGAGCCTCGGCACCATCGGC-ACCTTGGCGCTTGGAT-GTACGGGAGCCTCGGACACCA
68247458 TCGGCAACCTAGGCCCTTGGTC--GCGAGAGCCTC-GGCACCATCGCAACCTAGGCCCTTGGTCG
63 TCGGCAACCTAGGCCCTTGGTCGTGCG-GAGCCTCGGGCACCATCGCAACCTAGGCCC-TGGTCG
68247520 TGCGGGAGCCTCGGACACCATC-GCAACCTAGGCCCTGGTC
126 TGC-GGAGCCTCGG-CACCATCGGCAACCTAGGCCCTGGTC
*
68247560 GTACGGGAGCCTCGGACACCATCGGCACC-T-GCGCTT-GATGTACGGGAGCCTCGGACACCATC
1 GTGCGGGAGCCTCGG-CACCATCGGCACCTTGGCGCTTGGATGTACGGGAGCCTCGGACACCATC
*
68247622 GGC-ACCTAGGCCCTTGGT-GTGCGGAGCCTCGGACACCATCGGCAACCTAGGCCCTGGTCGTGC
65 GGCAACCTAGGCCCTTGGTCGTGCGGAGCCTCGGGCACCATC-GCAACCTAGGCCCTGGTCGTGC
68247685 GGAGCCTCGGCACCATCGGCAACCTAGGCCCCT-GTC
129 GGAGCCTCGGCACCATCGGCAACCTAGG-CCCTGGTC
* * * *
68247721 GTGC-GGAGCCTCGGCACCATCGGCAACCTAGGC-CCTGG-TCGTGC-GGAG-CTCGG-GACCAT
1 GTGCGGGAGCCTCGGCACCATCGGC-ACCTTGGCGCTTGGAT-GTACGGGAGCCTCGGACACCAT
*
68247780 CGGCAACCTA-GCCCCTGGTCGTGCGGA-CCTCGGGCACC-TCGC-ACCTAGGCCCTGGTCGTGC
64 CGGCAACCTAGGCCCTTGGTCGTGCGGAGCCTCGGGCACCATCGCAACCTAGGCCCTGGTCGTGC
68247841 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTGGTC
129 GGAGCCTC-GGCACCATCGGCAACCTAGGCCCTGGTC
* *
68247878 GTGCGGGAGCCTCGGCACCATCGGCACCTTCGTGCTTGGATGTACGGGAGCCTCGGACACCATCG
1 GTGCGGGAGCCTCGGCACCATCGGCACCTTGGCGCTTGGATGTACGGGAGCCTCGGACACCATCG
* *
68247943 GCAA-CTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGTAACCTAGGCCTTGGTC-TGC
66 GCAACCTAGGCCCTTGGTCGTGC-GGAGCCTCGGGCACCATC-GCAACCTAGGCCCTGGTCGTGC
* * *
68248006 GGAGCCTCGGC-CCATCGGC-A-CT-TGCTGCTCGAT-
129 GGAGCCTCGGCACCATCGGCAACCTAGGC-CCT-GGTC
* * * * *
68248039 GTGCGGGAGCCTCGGCAGCATTGGCACCTTGGTGCTTGGATGTGCGGGAGCCTC-GACACCATAG
1 GTGCGGGAGCCTCGGCACCATCGGCACCTTGGCGCTTGGATGTACGGGAGCCTCGGACACCATCG
68248103 GCAACCTAGG
66 GCAACCTAGG
68248113 AGTTGGATGT
Statistics
Matches: 492, Mismatches: 29, Indels: 69
0.83 0.05 0.12
Matches are distributed among these distances:
156 31 0.06
157 34 0.07
158 29 0.06
159 42 0.09
160 60 0.12
161 138 0.28
162 62 0.13
163 38 0.08
164 5 0.01
165 25 0.05
166 28 0.06
ACGTcount: A:0.16, C:0.35, G:0.33, T:0.17
Consensus pattern (164 bp):
GTGCGGGAGCCTCGGCACCATCGGCACCTTGGCGCTTGGATGTACGGGAGCCTCGGACACCATCG
GCAACCTAGGCCCTTGGTCGTGCGGAGCCTCGGGCACCATCGCAACCTAGGCCCTGGTCGTGCGG
AGCCTCGGCACCATCGGCAACCTAGGCCCTGGTC
Found at i:68262188 original size:43 final size:43
Alignment explanation
Indices: 68262141--68262825 Score: 445
Period size: 43 Copynumber: 16.6 Consensus size: 43
68262131 CAGCAAGGTG
*
68262141 CCGATGGTGCCCGAGGCTCCCGCATGACCAAGGGCCTAGGTTA
1 CCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTA
* *
68262184 CCGATAGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTG
1 CCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTA
* * ** ** *
68262227 CCGATGGTGTCCGAGGCTCCCGTAC-ATCCAAGTACGAAGG-TG
1 CCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTA
68262269 CCGATGGTG-CCGAGGCT-CCGCACGACC-AGGGCC-----TA
1 CCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTA
* * ** * * * **
68262304 -CGAAGAT-CCCGCA--C-GAC-CAGGGCCTAGGTTG-CTGATGGTGC
1 CCGATGGTGCCCG-AGGCTCCCGCACGACCAAGG--GCCT-A-GGTTA
* * *
68262345 CCGACGCT-CCC---GC------ACGACC-AGGGCCTAGGTTG
1 CCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTA
* * *
68262377 CCGATGGTGCCCGAGGCTCCCGCATGACCAGGGGCCTAGGTTG
1 CCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTA
* * * * *
68262420 CCGATGGTG-CCGAAGCTCTCGCACGACCAGGGGCCTAGCTTG
1 CCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTA
* * * * *
68262462 CCGATGGTG-CTGAGACTCCCGAACGACCAAGTGCCTAGGTTG
1 CCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTA
* * * *
68262504 CCGATGGTG-CTGAGACTCCCGCACGACCAAGTGCCTAGGTTG
1 CCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTA
* * *
68262546 CCGATGGTGTCCGAGGCTTCCGCAC-ATCCAAGGGCCTAGGTTG
1 CCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTA
* * * * * * *
68262589 CTGATGGTGTCCGAGGCTCCCGTAC-ATCTAAGCGCCAAGG-TG
1 CCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTA
* * * *
68262631 CCGATGGTGTCCGAAGCTCCCGTACGACCAAGGGCCTAGGTTG
1 CCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTA
* *
68262674 CCG-TGGGTGTCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTG
1 CCGAT-GGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTA
* * *
68262717 CGGATGGTG-CCGAGGCTCTCGTACGACCAAGGGCCTAGGTTA
1 CCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTA
* * * * *
68262759 CTGATGGTGCCCGAGACTCCCGTACGACCAAGGTCCTAGGTTG
1 CCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTA
* *
68262802 CCAATGGTG-CCGAGGCTCTCGCAC
1 CCGATGGTGCCCGAGGCTCCCGCAC
68262826 ATCCTTGCAC
Statistics
Matches: 530, Mismatches: 76, Indels: 73
0.78 0.11 0.11
Matches are distributed among these distances:
32 14 0.03
33 10 0.02
34 11 0.02
35 6 0.01
36 6 0.01
39 3 0.01
40 8 0.02
41 9 0.02
42 225 0.42
43 237 0.45
44 1 0.00
ACGTcount: A:0.18, C:0.32, G:0.33, T:0.18
Consensus pattern (43 bp):
CCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTA
Found at i:68262369 original size:42 final size:42
Alignment explanation
Indices: 68262310--68262936 Score: 608
Period size: 42 Copynumber: 14.8 Consensus size: 42
68262300 CCTACGAAGA
* *
68262310 TCCCGCACGACC-AGGGCCTAGGTTGCTGATGGTGCCCGACGC
1 TCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTG-CCGAGGC
68262352 TCCCGCACGACC-AGGGCCTAGGTTGCCGATGGTGCCCGAGGC
1 TCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTG-CCGAGGC
* * *
68262394 TCCCGCATGACCAGGGGCCTAGGTTGCCGATGGTGCCGAAGC
1 TCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCGAGGC
* * * * *
68262436 TCTCGCACGACCAGGGGCCTAGCTTGCCGATGGTGCTGAGAC
1 TCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCGAGGC
* * * *
68262478 TCCCGAACGACCAAGTGCCTAGGTTGCCGATGGTGCTGAGAC
1 TCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCGAGGC
*
68262520 TCCCGCACGACCAAGTGCCTAGGTTGCCGATGGTGTCCGAGGC
1 TCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTG-CCGAGGC
* *
68262563 TTCCGCAC-ATCCAAGGGCCTAGGTTGCTGATGGTGTCCGAGGC
1 TCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTG-CCGAGGC
* * * * *
68262606 TCCCGTAC-ATCTAAGCGCCAAGG-TGCCGATGGTGTCCGAAGC
1 TCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTG-CCGAGGC
*
68262648 TCCCGTACGACCAAGGGCCTAGGTTGCCG-TGGGTGTCCGAGGC
1 TCCCGCACGACCAAGGGCCTAGGTTGCCGAT-GGTG-CCGAGGC
*
68262691 TCCCGCACGACCAAGGGCCTAGGTTGCGGATGGTGCCGAGGC
1 TCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCGAGGC
* * * * *
68262733 TCTCGTACGACCAAGGGCCTAGGTTACTGATGGTGCCCGAGAC
1 TCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTG-CCGAGGC
* * *
68262776 TCCCGTACGACCAAGGTCCTAGGTTGCCAATGGTGCCGAGGC
1 TCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCGAGGC
* ** ** * * *
68262818 TCTCGCAC-ATCCTTGCACCAAGG-TGCCAATGGTGCCCAAGGC
1 TCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTG-CCGAGGC
* ** * * *
68262860 TCCCGCAC-ATCCGAGCACCAAGG-TGCTGATGGTCACCGAGGC
1 TCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGT-GCCGAGGC
* * * *
68262902 TCCTGCACAACCAAGAGCCTAGTTTGCCGATGGTG
1 TCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTG
68262937 TCTGAGGTGT
Statistics
Matches: 503, Mismatches: 69, Indels: 26
0.84 0.12 0.04
Matches are distributed among these distances:
41 12 0.02
42 314 0.62
43 176 0.35
44 1 0.00
ACGTcount: A:0.18, C:0.32, G:0.32, T:0.18
Consensus pattern (42 bp):
TCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCGAGGC
Found at i:68262455 original size:85 final size:85
Alignment explanation
Indices: 68262310--68262936 Score: 591
Period size: 85 Copynumber: 7.4 Consensus size: 85
68262300 CCTACGAAGA
* *
68262310 TCCCGCACGACC-AGGGCCTAGGTTGCTGATGGTGCCCGACGCTCCCGCACGACC-AGGGCCTAG
1 TCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAAGCTCCCGCACGACCAAGGGCCTAG
68262373 GTTGCCGATGGTGCCCGAGGC
66 GTTGCCGATGGTG-CCGAGGC
* * * *
68262394 TCCCGCATGACCAGGGGCCTAGGTTGCCGATGGTG-CCGAAGCTCTCGCACGACCAGGGGCCTAG
1 TCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAAGCTCCCGCACGACCAAGGGCCTAG
* * *
68262458 CTTGCCGATGGTGCTGAGAC
66 GTTGCCGATGGTGCCGAGGC
* * * *
68262478 TCCCGAACGACCAAGTGCCTAGGTTGCCGATGGTG-CTG-AGACTCCCGCACGACCAAGTGCCTA
1 TCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAAG-CTCCCGCACGACCAAGGGCCTA
68262541 GGTTGCCGATGGTGTCCGAGGC
65 GGTTGCCGATGGTG-CCGAGGC
* * * * * * * *
68262563 TTCCGCAC-ATCCAAGGGCCTAGGTTGCTGATGGTGTCCGAGGCTCCCGTAC-ATCTAAGCGCCA
1 TCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCCGAAGCTCCCGCACGA-CCAAGGGCCT
*
68262626 AGG-TGCCGATGGTGTCCGAAGC
64 AGGTTGCCGATGGTG-CCGAGGC
* * *
68262648 TCCCGTACGACCAAGGGCCTAGGTTGCCG-TGGGTGTCCGAGGCTCCCGCACGACCAAGGGCCTA
1 TCCCGCACGACCAAGGGCCTAGGTTGCCGAT-GGTGCCCGAAGCTCCCGCACGACCAAGGGCCTA
*
68262712 GGTTGCGGATGGTGCCGAGGC
65 GGTTGCCGATGGTGCCGAGGC
* * * * * *
68262733 TCTCGTACGACCAAGGGCCTAGGTTACTGATGGTGCCCG-AGACTCCCGTACGACCAAGGTCCTA
1 TCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAAG-CTCCCGCACGACCAAGGGCCTA
*
68262797 GGTTGCCAATGGTGCCGAGGC
65 GGTTGCCGATGGTGCCGAGGC
* ** ** * * * **
68262818 TCTCGCAC-ATCCTTGCACCAAGG-TGCCAATGGTGCCC-AAGGCTCCCGCAC-ATCCGAGCACC
1 TCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCCGAA-GCTCCCGCACGA-CCAAGGGCC
* * *
68262879 AAGG-TGCTGATGGTCACCGAGGC
63 TAGGTTGCCGATGGT-GCCGAGGC
* * * *
68262902 TCCTGCACAACCAAGAGCCTAGTTTGCCGATGGTG
1 TCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTG
68262937 TCTGAGGTGT
Statistics
Matches: 447, Mismatches: 75, Indels: 41
0.79 0.13 0.07
Matches are distributed among these distances:
83 11 0.02
84 151 0.34
85 251 0.56
86 33 0.07
87 1 0.00
ACGTcount: A:0.18, C:0.32, G:0.32, T:0.18
Consensus pattern (85 bp):
TCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAAGCTCCCGCACGACCAAGGGCCTAG
GTTGCCGATGGTGCCGAGGC
Found at i:68263269 original size:24 final size:24
Alignment explanation
Indices: 68263241--68263318 Score: 102
Period size: 24 Copynumber: 3.2 Consensus size: 24
68263231 TTTCTATATT
* *
68263241 CCGGGATGGCTCACCGGAGCACCA
1 CCGGGATGGCTCGCCGGAGCACCG
**
68263265 CCGGGAAAGCTCGCCGGAGCACCG
1 CCGGGATGGCTCGCCGGAGCACCG
* *
68263289 CCGGAATGGATCGCCGGAGCACCG
1 CCGGGATGGCTCGCCGGAGCACCG
68263313 CCGGGA
1 CCGGGA
68263319 ACCTAACCGG
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 45 1.00
ACGTcount: A:0.21, C:0.36, G:0.37, T:0.06
Consensus pattern (24 bp):
CCGGGATGGCTCGCCGGAGCACCG
Found at i:68263899 original size:24 final size:24
Alignment explanation
Indices: 68263867--68263913 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
68263857 TCCCAGGATG
*
68263867 GCTCACCGGATCACCGCCGGGAAA
1 GCTCACCGGAGCACCGCCGGGAAA
*
68263891 GCTCGCCGGAGCACCGCCGGGAA
1 GCTCACCGGAGCACCGCCGGGAA
68263914 CCTAACCGGC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.21, C:0.38, G:0.34, T:0.06
Consensus pattern (24 bp):
GCTCACCGGAGCACCGCCGGGAAA
Found at i:68268381 original size:177 final size:178
Alignment explanation
Indices: 68268082--68268435 Score: 507
Period size: 177 Copynumber: 2.0 Consensus size: 178
68268072 TTTTAATTGA
* * * *
68268082 AAATTTTTCCTGTTGGCCCAAAAGAAATACAAGAAGCCGAATGAAATATGGCATGATGGCATGGC
1 AAATTTTTCCTGTTCGCCCAAAACAAATACAAGAAGCCGAATGAAATATGGCA--ACGGCACGGC
* * *
68268147 AGAAAATTGAACAAGTGCCTGGACCACCAACAGTTGGGAGCTCGCACCCGCACCACCACGGCCCC
64 AAAAAATTGAACAAGTGCCCGGACCACCAACAGTTGGGAGCTCGCACCCGCACCACCACGACCCC
* * * *
68268212 CGTTGTGCCATGTTTCCCGAGGGGGCGGCACGGTCAAGT-TTCTAACTTAG
129 CGTTGTGCCATATTCCCCGAGGGGGCGGCAAGGCCAAGTGTT-TAACTTAG
* * *
68268262 AAATTTTTTCTGTTCGCCCAAAACAAATACAA-AAGGCCGAATGAAGTATGGC-ACGGCACGGTA
1 AAATTTTTCCTGTTCGCCCAAAACAAATACAAGAA-GCCGAATGAAATATGGCAACGGCACGGCA
* *
68268325 AAAAATTGAACAAGTGCCCGGACCACCAACAGTTGGGAGCTCGCACTCGCACCACCACGACCCCT
65 AAAAATTGAACAAGTGCCCGGACCACCAACAGTTGGGAGCTCGCACCCGCACCACCACGACCCCC
68268390 GTTGTGCCATATTCCCCGAGGGGGCGGCAAGGCCAAGTGTTTAACT
130 GTTGTGCCATATTCCCCGAGGGGGCGGCAAGGCCAAGTGTTTAACT
68268436 AACTCCTTAC
Statistics
Matches: 156, Mismatches: 16, Indels: 7
0.87 0.09 0.04
Matches are distributed among these distances:
177 107 0.69
178 2 0.01
179 2 0.01
180 45 0.29
ACGTcount: A:0.29, C:0.27, G:0.25, T:0.19
Consensus pattern (178 bp):
AAATTTTTCCTGTTCGCCCAAAACAAATACAAGAAGCCGAATGAAATATGGCAACGGCACGGCAA
AAAATTGAACAAGTGCCCGGACCACCAACAGTTGGGAGCTCGCACCCGCACCACCACGACCCCCG
TTGTGCCATATTCCCCGAGGGGGCGGCAAGGCCAAGTGTTTAACTTAG
Found at i:68279312 original size:42 final size:42
Alignment explanation
Indices: 68279142--68280008 Score: 858
Period size: 42 Copynumber: 21.6 Consensus size: 42
68279132 CATCCAACGT
* **
68279142 CCTAGGTTGCCTATGGTGTCCGAGGCTCCCGCAC-ACCAAGCA
1 CCTAGGTTGCCGATGGTG-CCGAGGCTCCCGCACGACCAAGGG
* * *
68279184 CCAAGG-T-CC-ATGCTGCTCGAGGCT-CC-CAC-ATCCGA-GG
1 CCTAGGTTGCCGATGGTGC-CGAGGCTCCCGCACGA-CCAAGGG
68279221 -C-AGG-TGCCGATGGTGCCGA-GCTCCCGCA-GACCAA-GG
1 CCTAGGTTGCCGATGGTGCCGAGGCTCCCGCACGACCAAGGG
*
68279257 CCTAGGTTACCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
1 CCTAGGTTGCCGATGGTG-CCGAGGCTCCCGCACGACCAAGGG
*
68279300 CCTAGGTT-CCGATGGTGTCCGAGGCTCCCGTAC-ATCCAA--G
1 CCTAGGTTGCCGATGGTG-CCGAGGCTCCCGCACGA-CCAAGGG
68279340 CC-AGG-TGCCGATGGTGCC-AGGCT-CCGCACGACC-A-GG
1 CCTAGGTTGCCGATGGTGCCGAGGCTCCCGCACGACCAAGGG
*
68279376 CCTAGG-TGCCGATGGTGCCGAGGCTCTC-CACGACC-AGGG
1 CCTAGGTTGCCGATGGTGCCGAGGCTCCCGCACGACCAAGGG
68279415 CCTAGGTTGCCGATGGTGCCCGA-GCT-CCGCACGACC-AGGG
1 CCTAGGTTGCCGATGGTG-CCGAGGCTCCCGCACGACCAAGGG
*
68279455 CCTAGG-TG-CGATGGTGCCCGAGGCTCCCGCACGACCAGGGG
1 CCTAGGTTGCCGATGGTG-CCGAGGCTCCCGCACGACCAAGGG
68279496 CCTAGGTTGCCGATGGTGCCGAGGCT-CCGCACGACC-AGGG
1 CCTAGGTTGCCGATGGTGCCGAGGCTCCCGCACGACCAAGGG
68279536 CCTAGGTTG-CGAT-GTGCCGAGGCT-CC-CACGACC-AGGG
1 CCTAGGTTGCCGATGGTGCCGAGGCTCCCGCACGACCAAGGG
68279573 CCTA-GTTGCCGATGGTGCCGAGGCT-CCGCAC-ACCAAGGG
1 CCTAGGTTGCCGATGGTGCCGAGGCTCCCGCACGACCAAGGG
*
68279612 CCTAGGTTGCCGATGGTGTCCGAGGCT-CCG-AC-ATCC-AGCG
1 CCTAGGTTGCCGATGGTG-CCGAGGCTCCCGCACGA-CCAAGGG
*
68279652 CC-AGG-T-CCGATGGTGTCCGAGGCTCCCGTACGACCAAGGG
1 CCTAGGTTGCCGATGGTG-CCGAGGCTCCCGCACGACCAAGGG
68279692 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACGACCAAGGG
1 CCTAGGTTGCCGATGGTG-CCGAGGCTCCCGCACGACCAAGGG
* *
68279735 CCTAGGTTGCGGATGGTGCCGAGGCTCTCGCACGACCAAGGG
1 CCTAGGTTGCCGATGGTGCCGAGGCTCCCGCACGACCAAGGG
*
68279777 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGTACGACCAAGGG
1 CCTAGGTTGCCGATGGTG-CCGAGGCTCCCGCACGACCAAGGG
* *
68279820 CCTAGGTTGCCGATGGTGCCGAGGCTCCCGTACGACCAAGGT
1 CCTAGGTTGCCGATGGTGCCGAGGCTCCCGCACGACCAAGGG
* * ** **
68279862 CCTA-GTTGCCAATGGTG-CGAGGCTCTCGCA--ATCCTTGCA
1 CCTAGGTTGCCGATGGTGCCGAGGCTCCCGCACGA-CCAAGGG
* * * **
68279901 CCAAGG-TGCCGATGGTGCCCAAGGCTCCC-CAC-ATCCGAGCA
1 CCTAGGTTGCCGATGGTG-CCGAGGCTCCCGCACGA-CCAAGGG
* * * * * *
68279942 CCAAGG-TGCTGATGGTCACCGAGGCTCCTGCACAACCAAGAG
1 CCTAGGTTGCCGATGGT-GCCGAGGCTCCCGCACGACCAAGGG
*
68279984 CCTAGTTTGCCGATGGTGTCCGAGG
1 CCTAGGTTGCCGATGGTG-CCGAGG
68280009 TGTCCGAGCT
Statistics
Matches: 722, Mismatches: 48, Indels: 109
0.82 0.05 0.12
Matches are distributed among these distances:
35 8 0.01
36 27 0.04
37 73 0.10
38 72 0.10
39 87 0.12
40 103 0.14
41 101 0.14
42 127 0.18
43 124 0.17
ACGTcount: A:0.17, C:0.33, G:0.33, T:0.16
Consensus pattern (42 bp):
CCTAGGTTGCCGATGGTGCCGAGGCTCCCGCACGACCAAGGG
Found at i:68279480 original size:196 final size:202
Alignment explanation
Indices: 68279142--68279891 Score: 878
Period size: 196 Copynumber: 3.7 Consensus size: 202
68279132 CATCCAACGT
* ** * *
68279142 CCTAGGTTGCCTATGGTGTCCGAGGCTCCCGCAC-ACCAAGCACCAAGGT-CC-ATGCTGCTCGA
1 CCTAGGTTGCCGATGGTG-CCGAGGCT-CCGCACGACC-AGGGCCTAGGTGCCGATGGTGC-CGA
* *
68279204 GGCTCCCAC-ATCCGA-GG-C-AGG-TGCCGATGGTGCCGA-GCTCCCGCA-GACCAAGGCCTAG
62 GGCTCCCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCGAGGCTCCCGCACGACCAGGGCCTAG
68279262 GTTACCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTT-CCGATGGTGTCCGAGGCT
126 G-T-CCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGTCCGAGGCT
*
68279326 CCCGTAC-ATCCAAG
189 CCCGCACGA-CCAAG
68279340 CC-AGG-TGCCGATGGTGCC-AGGCTCCGCACGACCA-GGCCTAGGTGCCGATGGTGCCGAGGCT
1 CCTAGGTTGCCGATGGTGCCGAGGCTCCGCACGACCAGGGCCTAGGTGCCGATGGTGCCGAGGCT
*
68279401 CTCCACGACC-AGGGCCTAGGTTGCCGATGGTGCCCGA-GCT-CCGCACGACCAGGGCCTAGGTG
66 C-CCACGACCAAGGGCCTAGGTTGCCGATGGTG-CCGAGGCTCCCGCACGACCAGGGCCTAGGTC
*
68279463 CGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGGTTGCCGATGGTG-CCGAGGCT-CCGC
129 CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGTCCGAGGCTCCCGC
*
68279526 ACGACCAGGG
194 ACGACCA-AG
*
68279536 CCTAGGTTG-CGAT-GTGCCGAGGCTCC-CACGACCAGGGCCTAGTTGCCGATGGTGCCGAGGCT
1 CCTAGGTTGCCGATGGTGCCGAGGCTCCGCACGACCAGGGCCTAGGTGCCGATGGTGCCGAGGCT
*
68279598 CCGCAC-ACCAAGGGCCTAGGTTGCCGATGGTGTCCGAGGCT-CCG-AC-ATCCAGCGCC-AGGT
66 CC-CACGACCAAGGGCCTAGGTTGCCGATGGTG-CCGAGGCTCCCGCACGA-CCAGGGCCTAGGT
* *
68279658 CCGATGGTGTCCGAGGCTCCCGTACGACCAAGGGCCTAGGTTGCCGATGGTGTCCGAGGCTCCCG
128 CCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGTCCGAGGCTCCCG
68279723 CACGACCAAGGG
193 CACGACCAA--G
*
68279735 CCTAGGTTGCGGATGGTGCCGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGA
1 CCTAGGTTGCCGATGGTGCCGAGGCTC-CGCACGACC-AGGGCCTAGG-TGCCGATGGTG-CCGA
* *
68279800 GGCTCCCGTACGACCAAGGGCCTAGGTTGCCGATGGTGCCGAGGCTCCCGTACGACCAAGGTCCT
62 GGCTCCC--ACGACCAAGGGCCTAGGTTGCCGATGGTGCCGAGGCTCCCGCACGACC-AGGGCCT
* * *
68279865 AGTTGCCAATGGTG--CGAGGCTCTCGCA
124 AGGT-CCGATGGTGCCCGAGGCTCCCGCA
68279892 ATCCTTGCAC
Statistics
Matches: 484, Mismatches: 26, Indels: 72
0.83 0.04 0.12
Matches are distributed among these distances:
192 6 0.01
193 18 0.04
194 22 0.05
195 12 0.02
196 135 0.28
197 116 0.24
198 41 0.08
199 10 0.02
200 3 0.01
201 12 0.02
202 1 0.00
203 7 0.01
204 9 0.02
205 12 0.02
206 10 0.02
207 10 0.02
208 29 0.06
209 4 0.01
210 16 0.03
211 3 0.01
212 8 0.02
ACGTcount: A:0.17, C:0.33, G:0.34, T:0.16
Consensus pattern (202 bp):
CCTAGGTTGCCGATGGTGCCGAGGCTCCGCACGACCAGGGCCTAGGTGCCGATGGTGCCGAGGCT
CCCACGACCAAGGGCCTAGGTTGCCGATGGTGCCGAGGCTCCCGCACGACCAGGGCCTAGGTCCG
ATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCAC
GACCAAG
Found at i:68279813 original size:85 final size:82
Alignment explanation
Indices: 68279119--68279886 Score: 843
Period size: 85 Copynumber: 9.6 Consensus size: 82
68279109 CCCTGCTGCT
* * *
68279119 CGAGGCATCCGCAC-ATCCAACGTCCTAGGTTGCCTATGGTGTCCGAGGCTCCCGCAC-ACCAAG
1 CGAGGC-TCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTG-CCGAGGCTCCCG-ACGACCAAG
** * *
68279182 CACCAAGG-T-CC-ATGCTGC
62 GGCCTAGGTTGCCGATGGTGC
*
68279200 TCGAGGCTCC-CAC-ATCCGA-GG-C-AGG-TGCCGATGGTGCCGA-GCTCCCG-CAGACCAA-G
1 -CGAGGCTCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCGAGGCTCCCGAC-GACCAAGG
*
68279256 GCCTAGGTTACCGATGGTGCC
63 GCCTAGGTTGCCGATGGTG-C
68279277 CGAGGCTCCCGCACGACCAAGGGCCTAGGTT-CCGATGGTGTCCGAGGCTCCCGTAC-ATCCAA-
1 CGAGGCT-CCGCACGACCAAGGGCCTAGGTTGCCGATGGTG-CCGAGGCTCCCG-ACGA-CCAAG
68279339 -GCC-AGG-TGCCGATGGTGC
62 GGCCTAGGTTGCCGATGGTGC
68279357 C-AGGCTCCGCACGACC-A-GGCCTAGG-TGCCGATGGTGCCGAGGCTCTCC-ACGACC-AGGGC
1 CGAGGCTCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCGAGGCTC-CCGACGACCAAGGGC
68279416 CTAGGTTGCCGATGGTGCC
65 CTAGGTTGCCGATGGTG-C
*
68279435 CGA-GCTCCGCACGACC-AGGGCCTAGG-TG-CGATGGTGCCCGAGGCTCCCGCACGACCAGGGG
1 CGAGGCTCCGCACGACCAAGGGCCTAGGTTGCCGATGGTG-CCGAGGCTCCCG-ACGACCAAGGG
68279496 CCTAGGTTGCCGATGGTGC
64 CCTAGGTTGCCGATGGTGC
68279515 CGAGGCTCCGCACGACC-AGGGCCTAGGTTG-CGAT-GTGCCGAGGCTCCC-ACGACC-AGGGCC
1 CGAGGCTCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCGAGGCTCCCGACGACCAAGGGCC
68279575 TA-GTTGCCGATGGTGC
66 TAGGTTGCCGATGGTGC
*
68279591 CGAGGCTCCGCAC-ACCAAGGGCCTAGGTTGCCGATGGTGTCCGAGGCT-CCGAC-ATCC-AGCG
1 CGAGGCTCCGCACGACCAAGGGCCTAGGTTGCCGATGGTG-CCGAGGCTCCCGACGA-CCAAGGG
68279652 CC-AGG-T-CCGATGGTGTC
64 CCTAGGTTGCCGATGGTG-C
*
68279669 CGAGGCTCCCGTACGACCAAGGGCCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACGACCAAGG
1 CGAGGCT-CCGCACGACCAAGGGCCTAGGTTGCCGATGGTG-CCGAGGCTCCCG-ACGACCAAGG
*
68279734 GCCTAGGTTGCGGATGGTGC
63 GCCTAGGTTGCCGATGGTGC
68279754 CGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGTACGACCAAGG
1 CGAGGCTC-CGCACGACCAAGGGCCTAGGTTGCCGATGGTG-CCGAGGCTCCCG-ACGACCAAGG
68279819 GCCTAGGTTGCCGATGGTGC
63 GCCTAGGTTGCCGATGGTGC
* * *
68279839 CGAGGCTCCCGTACGACCAAGGTCCTA-GTTGCCAATGGTG-CGAGGCTC
1 CGAGGCT-CCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCGAGGCTC
68279887 TCGCAATCCT
Statistics
Matches: 611, Mismatches: 22, Indels: 106
0.83 0.03 0.14
Matches are distributed among these distances:
72 1 0.00
73 6 0.01
74 17 0.03
75 23 0.04
76 84 0.14
77 38 0.06
78 65 0.11
79 52 0.09
80 67 0.11
81 75 0.12
82 32 0.05
83 17 0.03
84 20 0.03
85 105 0.17
86 9 0.01
ACGTcount: A:0.17, C:0.33, G:0.33, T:0.16
Consensus pattern (82 bp):
CGAGGCTCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCGAGGCTCCCGACGACCAAGGGCC
TAGGTTGCCGATGGTGC
Found at i:68321926 original size:26 final size:26
Alignment explanation
Indices: 68321897--68321955 Score: 109
Period size: 26 Copynumber: 2.3 Consensus size: 26
68321887 CCCACACATC
68321897 CGAGGCACCAGGGTGCCCCTGCTGCT
1 CGAGGCACCAGGGTGCCCCTGCTGCT
*
68321923 CGAGGCACCAGGGTGCCCTTGCTGCT
1 CGAGGCACCAGGGTGCCCCTGCTGCT
68321949 CGAGGCA
1 CGAGGCA
68321956 TCCGCACATC
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 32 1.00
ACGTcount: A:0.14, C:0.36, G:0.36, T:0.15
Consensus pattern (26 bp):
CGAGGCACCAGGGTGCCCCTGCTGCT
Found at i:68322040 original size:42 final size:42
Alignment explanation
Indices: 68321927--68322089 Score: 116
Period size: 43 Copynumber: 3.8 Consensus size: 42
68321917 GCTGCTCGAG
* **
68321927 GCACCAGGGTGCCCTTGCTGCTCGAGGCAT-CCGCACATCCAA
1 GCACCAAGGTGCCAATGCTGCTCGAGGC-TCCCGCACATCCAA
* * * * *
68321969 -CGTCCTAGGTTGCCTATGGTG-TCCGAGGCTCCCGCACAACCAA
1 GC-ACCAAGG-TGCCAATGCTGCT-CGAGGCTCCCGCACATCCAA
* * *
68322012 GCACCAAGGTGCCAATGCTGCTCGAGGCTCTCACACATCCGAG
1 GCACCAAGGTGCCAATGCTGCTCGAGGCTCCCGCACATCC-AA
** * * *
68322055 GCAGTAAGGTGCCGATGGTGCCCGAGGCTCCCGCA
1 GCACCAAGGTGCCAATGCTGCTCGAGGCTCCCGCA
68322090 TGACCAAGGG
Statistics
Matches: 92, Mismatches: 22, Indels: 13
0.72 0.17 0.10
Matches are distributed among these distances:
41 1 0.01
42 30 0.33
43 60 0.65
44 1 0.01
ACGTcount: A:0.20, C:0.35, G:0.28, T:0.17
Consensus pattern (42 bp):
GCACCAAGGTGCCAATGCTGCTCGAGGCTCCCGCACATCCAA
Found at i:68322113 original size:43 final size:43
Alignment explanation
Indices: 68321972--68322914 Score: 828
Period size: 43 Copynumber: 22.6 Consensus size: 43
68321962 CATCCAACGT
* * * **
68321972 CCTAGGTTGCCTATGGTGTCCGAGGCTCCCGCACAACCAAGCA
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * * * * * *
68322015 CCAAGG-TGCCAATGCTGCTCGAGGCTCTCACAC-ATCCGA-GG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGG
* *
68322056 CAGTAAGG-TGCCGATGGTGCCCGAGGCTCCCGCATGACCAAGGG
1 C-CT-AGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* *
68322100 CCTAGGTTACCGATGGTGCCCGAGGCTCCCGCATGACCAAGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* *
68322143 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGTAC-ATCCAA--G
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGG
** * **
68322184 CAAAAG-TGCCGATGGTGCCC-A-GCTCCCGCACGACGGA-GG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
*** * *
68322223 CC-ATGG--GCCGA-GGTG--CG-GG--GGGGGACGACCAGGGG
1 CCTA-GGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * *
68322258 CCTAGG-TGCCGATGGTGCCCGAGGCTCTCACACGACCAGGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
*
68322300 CCTAGGTTGCCGATGGTGCCCGACGCTCCCGCACGACC-AGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* *
68322342 CCTAGGTTGCTGATGGTGCCCGAGGCTCCCGCACGACCAGGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
*
68322385 CCTAGGTTGCCGATGGTG-CCGAGGCTCTCGCACGACC-AGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * * * *
68322426 CCTAGGTTGTCGATGATG-CCGAGGCTCTCACACGACCAGGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * *
68322468 CCTACGTTGCCGATGGTGTCCGAGGCTTCCGCAC-ATCCAAGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGG
* * *
68322511 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGTAC-ATCCAAGCG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGG
* * * *
68322554 CCAAGG-TACCGATGGTGTCCGAGGCTCCCGTACGACCAAGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
*
68322596 CCTAGGTTGCCGATGGTGTCCGAGGCT-CCGCACGACCAAGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * *
68322638 CCTAGGTTGCGGATGGTG-CCGAGGCTCTCGCATGACCAAGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
*
68322680 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGTACGACCAAGGG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * *
68322723 CCTAGGTTGCCGATGGTGCTCGAGGCTCCCGTACGACCAAGGT
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * * * ** **
68322766 CCTAGGTTGCCAATGGTG-CAGAGGCTCTCGCA-TATCCTTGCA
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGG
* * * * **
68322808 CCAAGG-TGCCGATGGTGCCCAAGGCTCCCACAC-ATCCGAGCA
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGG
* * * *
68322850 CC-AGG-TGCTGATGGT-CACCGAGGCTCCTGCACAACCAAGAG
1 CCTAGGTTGCCGATGGTGC-CCGAGGCTCCCGCACGACCAAGGG
* *
68322891 CCTAGTTTG-CGATGGTGTCCGAGG
1 CCTAGGTTGCCGATGGTGCCCGAGG
68322915 TGTCCGAGGC
Statistics
Matches: 748, Mismatches: 114, Indels: 77
0.80 0.12 0.08
Matches are distributed among these distances:
34 6 0.01
35 7 0.01
36 7 0.01
37 8 0.01
38 17 0.02
39 7 0.01
40 16 0.02
41 92 0.12
42 271 0.36
43 313 0.42
44 4 0.01
ACGTcount: A:0.18, C:0.31, G:0.33, T:0.17
Consensus pattern (43 bp):
CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
Found at i:68322294 original size:42 final size:43
Alignment explanation
Indices: 68322247--68322914 Score: 706
Period size: 42 Copynumber: 15.8 Consensus size: 43
68322237 GCGGGGGGGG
* * *
68322247 ACGACCAGGGGCCTAGG-TGCCGATGGTGCCCGAGGCTCTCAC
1 ACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGC
* *
68322289 ACGACCAGGGGCCTAGGTTGCCGATGGTGCCCGACGCTCCCGC
1 ACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGC
*
68322332 ACGACC-AGGGCCTAGGTTGCTGATGGTGCCCGAGGCTCCCGC
1 ACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGC
* *
68322374 ACGACCAGGGGCCTAGGTTGCCGATGGTG-CCGAGGCTCTCGC
1 ACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGC
* * * *
68322416 ACGACC-AGGGCCTAGGTTGTCGATGATG-CCGAGGCTCTCAC
1 ACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGC
* * * *
68322457 ACGACCAGGGGCCTACGTTGCCGATGGTGTCCGAGGCTTCCGC
1 ACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGC
* *
68322500 AC-ATCCAAGGGCCTAGGTTGCCGATGGTGTCCGAGGCTCCCGT
1 ACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGC
* * * * *
68322543 AC-ATCCAAGCGCCAAGG-TACCGATGGTGTCCGAGGCTCCCGT
1 ACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGC
*
68322585 ACGACCAAGGGCCTAGGTTGCCGATGGTGTCCGAGGCT-CCGC
1 ACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGC
* *
68322627 ACGACCAAGGGCCTAGGTTGCGGATGGTG-CCGAGGCTCTCGC
1 ACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGC
* *
68322669 ATGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGT
1 ACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGC
* *
68322712 ACGACCAAGGGCCTAGGTTGCCGATGGTGCTCGAGGCTCCCGT
1 ACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGC
* * * *
68322755 ACGACCAAGGTCCTAGGTTGCCAATGGTG-CAGAGGCTCTCGC
1 ACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGC
* ** ** * * *
68322797 A-TATCCTTGCACCAAGG-TGCCGATGGTGCCCAAGGCTCCCAC
1 ACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGC
* ** * *
68322839 AC-ATCCGAGCACC-AGG-TGCTGATGGT-CACCGAGGCTCCTGC
1 ACGA-CCAAGGGCCTAGGTTGCCGATGGTGC-CCGAGGCTCCCGC
* * * *
68322880 ACAACCAAGAGCCTAGTTTG-CGATGGTGTCCGAGG
1 ACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGG
68322915 TGTCCGAGGC
Statistics
Matches: 541, Mismatches: 68, Indels: 34
0.84 0.11 0.05
Matches are distributed among these distances:
40 1 0.00
41 86 0.16
42 243 0.45
43 211 0.39
ACGTcount: A:0.18, C:0.31, G:0.33, T:0.18
Consensus pattern (43 bp):
ACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGC
Found at i:68322357 original size:85 final size:86
Alignment explanation
Indices: 68321972--68322797 Score: 827
Period size: 85 Copynumber: 9.9 Consensus size: 86
68321962 CATCCAACGT
* * ** * * * *
68321972 CCTAGGTTGCCTATGGTGTCCGAGGCTCCCGCACAACCAAGCACCAAGG-TGCCAATGCTGCTCG
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCG
* * *
68322036 AGGCTCTCACAC-ATCC-GAGG
66 AGGCTCCCGCACGA-CCAGGGG
* * * *
68322056 CAGTAAGG-TGCCGATGGTGCCCGAGGCTCCCGCATGACCAAGGGCCTAGGTTACCGATGGTGCC
1 C-CT-AGGTTGCCGATGGTGTCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* *
68322120 CGAGGCTCCCGCATGACCAAGGG
64 CGAGGCTCCCGCACGACCAGGGG
* ** *
68322143 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGTAC-ATCCAA--GCAAAAG-TGCCGATGGTGCCC
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCC
68322204 -A-GCTCCCGCACGA-C-GGAGG
65 GAGGCTCCCGCACGACCAGG-GG
*** * *
68322223 CC-ATGG--GCCGA-GGTG--CG-GG--GGGGGACGACCAGGGGCCTAGG-TGCCGATGGTGCCC
1 CCTA-GGTTGCCGATGGTGTCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCC
* *
68322278 GAGGCTCTCACACGACCAGGGG
65 GAGGCTCCCGCACGACCAGGGG
* * *
68322300 CCTAGGTTGCCGATGGTGCCCGACGCTCCCGCACGACC-AGGGCCTAGGTTGCTGATGGTGCCCG
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCG
68322364 AGGCTCCCGCACGACCAGGGG
66 AGGCTCCCGCACGACCAGGGG
* * *
68322385 CCTAGGTTGCCGATGGTG-CCGAGGCTCTCGCACGACC-AGGGCCTAGGTTGTCGATGATG-CCG
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCG
* *
68322447 AGGCTCTCACACGACCAGGGG
66 AGGCTCCCGCACGACCAGGGG
* * *
68322468 CCTACGTTGCCGATGGTGTCCGAGGCTTCCGCAC-ATCCAAGGGCCTAGGTTGCCGATGGTGTCC
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCC
* * *
68322532 GAGGCTCCCGTAC-ATCCAAGCG
65 GAGGCTCCCGCACGA-CCAGGGG
* * * *
68322554 CCAAGG-TACCGATGGTGTCCGAGGCTCCCGTACGACCAAGGGCCTAGGTTGCCGATGGTGTCCG
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCG
*
68322618 AGGCT-CCGCACGACCAAGGG
66 AGGCTCCCGCACGACCAGGGG
* * *
68322638 CCTAGGTTGCGGATGGTG-CCGAGGCTCTCGCATGACCAAGGGCCTAGGTTGCCGATGGTGCCCG
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCG
* *
68322702 AGGCTCCCGTACGACCAAGGG
66 AGGCTCCCGCACGACCAGGGG
* * * *
68322723 CCTAGGTTGCCGATGGTG-CTCGAGGCTCCCGTACGACCAAGGTCCTAGGTTGCCAATGGTG-CA
1 CCTAGGTTGCCGATGGTGTC-CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCC
*
68322786 GAGGCTCTCGCA
65 GAGGCTCCCGCA
68322798 TATCCTTGCA
Statistics
Matches: 619, Mismatches: 87, Indels: 71
0.80 0.11 0.09
Matches are distributed among these distances:
72 6 0.01
73 1 0.00
74 20 0.03
75 3 0.00
76 10 0.02
77 11 0.02
78 8 0.01
79 7 0.01
80 11 0.02
81 11 0.02
82 3 0.00
83 54 0.09
84 128 0.21
85 230 0.37
86 112 0.18
87 4 0.01
ACGTcount: A:0.18, C:0.31, G:0.34, T:0.17
Consensus pattern (86 bp):
CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCG
AGGCTCCCGCACGACCAGGGG
Found at i:68333611 original size:85 final size:84
Alignment explanation
Indices: 68333391--68333722 Score: 387
Period size: 85 Copynumber: 3.9 Consensus size: 84
68333381 NNNNNNNTTT
* * * * *
68333391 GTCGTGCGGGAGCCTCGTGCACCATCGACACCTTGGTGCTTGGATGTGCCGGAACCTCGGGCACC
1 GTCGTGCGGGAGCCTCGGGCACCATCGGCAACTTGGTGCTTGGATGTGCGGGAGCCTCGGGCACC
* *
68333456 ATCGGCAACCTAGACCCTTG
66 ATCGGC-ACCTCGGCCCTTG
* * * * ** * *
68333476 GTCGTGCGAGAGGCTCGGGCACCATCGGCAAAATAGGCCCTTGG-TCGTGCGGGGGCCTCGGCCA
1 GTCGTGCGGGAGCCTCGGGCACCATCGGC-AACTTGGTGCTTGGAT-GTGCGGGAGCCTCGGGCA
68333540 CCATCGGCACCTCGGCCCTTG
64 CCATCGGCACCTCGGCCCTTG
* * *
68333561 GTCGTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGGGCAG
1 GTCGTGCGGGAGCCTCGGGCACCATCGGCAACTTGGT-GCTTGGATGTGCGGGAGCCTCGGGCAC
** *
68333626 CATCGGCACCTCGGTGGCTAG
65 CATCGGCACCTCGG-CCCTTG
** *
68333647 GAGGTGCGGGAGCCTCGGACACCATCGGCAACTTGGTGCTTGGATGTGCGGGAGCCTCGGGCACC
1 GTCGTGCGGGAGCCTCGGGCACCATCGGCAACTTGGTGCTTGGATGTGCGGGAGCCTCGGGCA-C
68333712 CATCGGCACCT
65 CATCGGCACCT
68333723 TGGTGCCTGG
Statistics
Matches: 206, Mismatches: 35, Indels: 11
0.82 0.14 0.04
Matches are distributed among these distances:
84 4 0.02
85 123 0.60
86 79 0.38
ACGTcount: A:0.14, C:0.32, G:0.36, T:0.18
Consensus pattern (84 bp):
GTCGTGCGGGAGCCTCGGGCACCATCGGCAACTTGGTGCTTGGATGTGCGGGAGCCTCGGGCACC
ATCGGCACCTCGGCCCTTG
Found at i:68333620 original size:43 final size:43
Alignment explanation
Indices: 68333394--68333742 Score: 327
Period size: 43 Copynumber: 8.2 Consensus size: 43
68333384 NNNNTTTGTC
* * *
68333394 GTGCGGGAGCCTCGTGCACCATCGACACCTTGGT-GCTTGGAT
1 GTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTCCCTTGGAT
* * * *
68333436 GTGCCGGAACCTCGGGCACCATCGGCAACC-TAGACCCTTGG-T
1 GTGCGGGAGCCTCGGGCACCATCGGC-ACCTTGGTCCCTTGGAT
* * ** *
68333478 CGTGCGAGAGGCTCGGGCACCATCGGCAAAATAGG-CCCTTGG-T
1 -GTGCGGGAGCCTCGGGCACCATCGGC-ACCTTGGTCCCTTGGAT
* * *
68333521 CGTGCGGGGGCCTCGGCCACCATCGGCACCTCGG-CCCTTGG-T
1 -GTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTCCCTTGGAT
** *
68333563 CGTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGGCTCGGAT
1 -GTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTCCCTTGGAT
* * ** * *
68333607 GTGCGGGAGCCTCGGGCAGCATCGGCACCTCGGTGGCTAGGAG
1 GTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTCCCTTGGAT
* * *
68333650 GTGCGGGAGCCTCGGACACCATCGGCAACTTGGT-GCTTGGAT
1 GTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTCCCTTGGAT
* *
68333692 GTGCGGGAGCCTCGGGCACCCATCGGCACCTTGGTGCCTGGGAT
1 GTGCGGGAGCCTCGGGCA-CCATCGGCACCTTGGTCCCTTGGAT
68333736 GTGCGGG
1 GTGCGGG
68333743 CTAAAGAAGA
Statistics
Matches: 257, Mismatches: 42, Indels: 14
0.82 0.13 0.04
Matches are distributed among these distances:
42 91 0.35
43 151 0.59
44 15 0.06
ACGTcount: A:0.14, C:0.31, G:0.37, T:0.18
Consensus pattern (43 bp):
GTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTCCCTTGGAT
Found at i:68333621 original size:128 final size:127
Alignment explanation
Indices: 68333391--68333742 Score: 379
Period size: 128 Copynumber: 2.7 Consensus size: 127
68333381 NNNNNNNTTT
* * *
68333391 GTCGTGCGGGAGCCTCGTGCACCATCGACACCTTGGTGCTTGGATGTGCCGGAACCTCGGGCACC
1 GTCGTGCGGGAGCCTCG-GCACCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGGGCACC
* ** * * * *
68333456 ATCGGCAACC-TAGACCCTTGG-TCGTGCGAGAGGCTCGGGCACCATCGGCAAAATAGG-CCCTT
65 ATCGGC-ACCTTGGTGCCTCGGAT-GTGCGGGAGCCTCGGGCACCATCGGC-AAATAGGTCCCTA
68333518 G
127 G
* * **
68333519 GTCGTGCGGGGGCCTCGGCCACCATCGGCACCTCGGCCCTTGG-TCGTGCGGGAGCCTCGGGCAC
1 GTCGTGCGGGAGCCTCGG-CACCATCGGCACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGGGCAC
* * ** * **
68333583 CATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGGGCAGCATCGGCACCTCGGTGGCTAG
64 CATCGGCACCTTGGTGCCTCGGATGTGCGGGAGCCTCGGGCACCATCGGCAAATAGGTCCCTAG
** *
68333647 GAGGTGCGGGAGCCTCGGACACCATCGGCAACTTGGTGCTTGGATGTGCGGGAGCCTCGGGCACC
1 GTCGTGCGGGAGCCTCGG-CACCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGGGCA-C
*
68333712 CATCGGCACCTTGGTGCCTGGGATGTGCGGG
64 CATCGGCACCTTGGTGCCTCGGATGTGCGGG
68333743 CTAAAGAAGA
Statistics
Matches: 186, Mismatches: 31, Indels: 13
0.81 0.13 0.06
Matches are distributed among these distances:
127 9 0.05
128 145 0.78
129 32 0.17
ACGTcount: A:0.14, C:0.31, G:0.37, T:0.18
Consensus pattern (127 bp):
GTCGTGCGGGAGCCTCGGCACCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGGGCACCA
TCGGCACCTTGGTGCCTCGGATGTGCGGGAGCCTCGGGCACCATCGGCAAATAGGTCCCTAG
Found at i:68341749 original size:42 final size:42
Alignment explanation
Indices: 68341645--68341852 Score: 169
Period size: 42 Copynumber: 4.9 Consensus size: 42
68341635 GAGCCTCCAT
*
68341645 CACCTTGGTGGC-TCGGATGTGTGGGAGCCTC-AGCCACCATCGG
1 CACCTTGGT-GCAT-GGATGTGCGGGAGCCTCGAG-CACCATCGG
* * *
68341688 TAACCTTGATGCTTGGATGTGCGGGAGCCTCGAGCACCATCGG
1 -CACCTTGGTGCATGGATGTGCGGGAGCCTCGAGCACCATCGG
* *
68341731 CACCTTGGTGCATGGATGTGCGGGAGCATCG-GACACCACCGG
1 CACCTTGGTGCATGGATGTGCGGGAGCCTCGAG-CACCATCGG
* * ** * *
68341773 CAAACTAGGCCCTTGGTTGTG-GGGAGCCTCGGAG-ACCATCGG
1 C-ACCTTGGTGCATGGATGTGCGGGAGCCTC-GAGCACCATCGG
*
68341815 CACCTCGGTGCTAT-GATGTGCGGGAGCCTTC-AGCACCA
1 CACCTTGGTGC-ATGGATGTGCGGGAGCC-TCGAGCACCA
68341853 AAGCTAAAGT
Statistics
Matches: 132, Mismatches: 22, Indels: 22
0.75 0.12 0.12
Matches are distributed among these distances:
41 14 0.11
42 64 0.48
43 43 0.33
44 11 0.08
ACGTcount: A:0.18, C:0.28, G:0.34, T:0.20
Consensus pattern (42 bp):
CACCTTGGTGCATGGATGTGCGGGAGCCTCGAGCACCATCGG
Found at i:68342089 original size:24 final size:24
Alignment explanation
Indices: 68342062--68342140 Score: 106
Period size: 24 Copynumber: 3.3 Consensus size: 24
68342052 CCGGTTAGGT
*
68342062 TCCCGGTGGTGCTCCGGCGATCCG
1 TCCCGGTGGTGCTCCGGCGAACCG
*
68342086 TCCCGGCGGTGCTCCGGCGAACCG
1 TCCCGGTGGTGCTCCGGCGAACCG
*
68342110 TCCC-GTCGGTGCTCCGGTGAACCG
1 TCCCGGT-GGTGCTCCGGCGAACCG
*
68342134 TTCCGGT
1 TCCCGGT
68342141 AGCATAGGCC
Statistics
Matches: 48, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
23 1 0.02
24 45 0.94
25 2 0.04
ACGTcount: A:0.06, C:0.38, G:0.35, T:0.20
Consensus pattern (24 bp):
TCCCGGTGGTGCTCCGGCGAACCG
Found at i:68342222 original size:42 final size:43
Alignment explanation
Indices: 68342158--68343017 Score: 729
Period size: 43 Copynumber: 20.2 Consensus size: 43
68342148 GCCCTTGGTC
* *
68342158 GTGCGGGAGCCTCGGGCACCATCGGCACCCT-GGTGCTAGGAT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGGAT
* * * * * **
68342200 GTGCAGGAGCCCCGGACACCATCGGCAAACTAAGCCCTTGGTAT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGG-AT
* * * *
68342244 -TGCAGGAGCCTCGGGCGCCATCGGC-ACCTCGGTGCTTCGAT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGGAT
**
68342285 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-T
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGGAT
*
68342327 CGTGCGGGAGCCTCGGGCACCATCGGC-ACCTCGGTGCTAT-GAT
1 -GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCT-TGGAT
* * ** **
68342370 GGGCGGGAGCCTCGGACACTGTCGGCAACCTAGGCCCTTGG-T
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGGAT
* *
68342412 CGTGCGGGAGCCTCGAGCACCATCGGC-ACCTTGGTGCTTGGAT
1 -GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGGAT
* * * * * **
68342455 GTCCGAGAACCTCGCGCACCATCGACAACCTAGGCCCTTGG-T
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGGAT
* * * * **
68342497 CGTGCGAGAGGCTCGGGCACCATCGGCAAACTAAGCCCTTGG-T
1 -GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGGAT
** **
68342540 CGTGCGGGAGCCTCGGGCACCATCGGCAAAATAGGCCCTTGG-T
1 -GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGGAT
* * *
68342583 CGTGCGGGAGCCTCGGCCACCATCGGC-TCCTAGGTGCTGGGAT
1 -GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGGAT
* * ** *
68342626 GTGCGGGAGCCTCGGACACCATCGGCAAACTAGGCCCTTTG-T
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGGAT
* * *
68342668 CGTGCGGGAGCCTCGTGCACCATCGAC-ACCTTGGTGCTTGGAT
1 -GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGGAT
* * ***
68342711 GTGCCGGAACCTCGGGCACCATCGGCAACCTAGACCCTTGG-T
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGGAT
* * ** **
68342753 CGTGCGAGAGGCTCGGGCACCATCGGCAAAATAGGCCCTTGG-T
1 -GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGGAT
* * * **
68342796 CGTGCGGGGGCCTCGGCCACCATCGGC-ACCTCGGCCCTTGG-T
1 -GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGGAT
* *
68342838 CGTGCGGGAGCCTCGGGCACCATCGGC-ACCTTGGTGGCTCGGAT
1 -GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGT-GCTTGGAT
* * * *
68342882 GTGCGGGAGCCTCGGGCAGCATCGGC-ACCTCGGTGGCTAGGAG
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGT-GCTTGGAT
* *
68342925 GTGCGGGAGCCTCGGACACCATCGGCAA-CTTGGTGCTTGGAT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGGAT
* *
68342967 GTGCGGGAGCCTCGGGCACCCATCGGC-ACCTTGGTGCCTGGGAT
1 GTGCGGGAGCCTCGGGCA-CCATCGGCAACCTAGGTG-CTTGGAT
68343011 GTGCGGG
1 GTGCGGG
68343018 CTAAAGAAGA
Statistics
Matches: 671, Mismatches: 122, Indels: 48
0.80 0.15 0.06
Matches are distributed among these distances:
41 2 0.00
42 257 0.38
43 395 0.59
44 17 0.03
ACGTcount: A:0.16, C:0.32, G:0.35, T:0.18
Consensus pattern (43 bp):
GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGTGCTTGGAT
Found at i:68342294 original size:85 final size:85
Alignment explanation
Indices: 68342145--68342994 Score: 992
Period size: 85 Copynumber: 10.0 Consensus size: 85
68342135 TCCGGTAGCA
* *
68342145 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCCT-GGTGCTAGGATGTGCAGGAG
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA-CCTAGGTGCTTGGATGTGCGGGAG
* * *
68342209 CCCCGGACACCATCGGCAAAC
65 CCTCGGGCACCATCGGCAACC
* ** * * * *
68342230 TAAGCCCTTGGTATTGCAGGAGCCTCGGGCGCCATCGGCACCTCGGTGCTTCGATGTGCGGGAGC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGTGCTTGGATGTGCGGGAGC
68342295 CTCGGGCACCATCGGCAACC
66 CTCGGGCACCATCGGCAACC
* *
68342315 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTCGGTGCTAT-GATGGGCGGGAG
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGTGCT-TGGATGTGCGGGAG
* **
68342379 CCTCGGACACTGTCGGCAACC
65 CCTCGGGCACCATCGGCAACC
* * * * *
68342400 TAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTCCGAGAAC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGTGCTTGGATGTGCGGGAGC
* *
68342465 CTCGCGCACCATCGACAACC
66 CTCGGGCACCATCGGCAACC
* * * * **
68342485 TAGGCCCTTGGTCGTGCGAGAGGCTCGGGCACCATCGGCAAACTAAGCCCTTGG-TCGTGCGGGA
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGTGCTTGGAT-GTGCGGGA
**
68342549 GCCTCGGGCACCATCGGCAAAA
64 GCCTCGGGCACCATCGGCAACC
* * *
68342571 TAGGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCTCCTAGGTGCTGGGATGTGCGGGAGC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGTGCTTGGATGTGCGGGAGC
* *
68342636 CTCGGACACCATCGGCAAAC
66 CTCGGGCACCATCGGCAACC
* * * * * *
68342656 TAGGCCCTTTGTCGTGCGGGAGCCTCGTGCACCATCGACACCTTGGTGCTTGGATGTGCCGGAAC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGTGCTTGGATGTGCGGGAGC
68342721 CTCGGGCACCATCGGCAACC
66 CTCGGGCACCATCGGCAACC
* * * ** ** *
68342741 TAGACCCTTGGTCGTGCGAGAGGCTCGGGCACCATCGGCAAAATAGGCCCTTGG-TCGTGCGGGG
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGTGCTTGGAT-GTGCGGGA
*
68342805 GCCTCGGCCACCATCGGC-ACC
64 GCCTCGGGCACCATCGGCAACC
* * *
68342826 TCGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGGCTCGGATGTGCGGGAG
1 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGT-GCTTGGATGTGCGGGAG
*
68342891 CCTCGGGCAGCATCGGC-ACC
65 CCTCGGGCACCATCGGCAACC
* ** * ** * * *
68342911 TCGGTGGCTAGGAGGTGCGGGAGCCTCGGACACCATCGGCAACTTGGTGCTTGGATGTGCGGGAG
1 TAGG-CCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGTGCTTGGATGTGCGGGAG
68342976 CCTCGGGCACCCATCGGCA
65 CCTCGGGCA-CCATCGGCA
68342995 CCTTGGTGCC
Statistics
Matches: 647, Mismatches: 105, Indels: 24
0.83 0.14 0.03
Matches are distributed among these distances:
84 8 0.01
85 494 0.76
86 145 0.22
ACGTcount: A:0.16, C:0.32, G:0.34, T:0.18
Consensus pattern (85 bp):
TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGTGCTTGGATGTGCGGGAGC
CTCGGGCACCATCGGCAACC
Found at i:68342642 original size:256 final size:254
Alignment explanation
Indices: 68342145--68342994 Score: 1075
Period size: 256 Copynumber: 3.3 Consensus size: 254
68342135 TCCGGTAGCA
* * * *
68342145 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCCTGGTGCTAGGATGTGC-AGGAG
1 TAGGCCCTTGGTCGTGCGGGAGCCTC-GGCACCATCGGCACCTTGGTGCTTGGATGTCCGA-GAA
* * * * ** * * *
68342209 CCCCGGACACCATCGGCAAACTAAGCCCTTGGTATTGC-AGGAGCCTCGGGCGCCATCGGC-ACC
64 CCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGA-GAGGCTCGGGCACCATCGGCAAAC
* ** *
68342272 TCGGTGCTTCGAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGA
128 TAGGCCCTT-GGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGA
* * * *
68342336 GCCTCGGGCACCATCGGCACCTCGGTGCTATGATGGGCGGGAGCCTCGGACACTGTCGGCAACC
192 GCCTCGGGCACCATCGGCACCTAGGTGCTAGGATGTGCGGGAGCCTCGGACAC-ATCGGCAACC
68342400 TAGGCCCTTGGTCGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTCCGAGAAC
1 TAGGCCCTTGGTCGTGCGGGAGCCTCG-GCACCATCGGCACCTTGGTGCTTGGATGTCCGAGAAC
* *
68342465 CTCGCGCACCATCGACAACCTAGGCCCTTGGTCGTGCGAGAGGCTCGGGCACCATCGGCAAACTA
65 CTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGGCTCGGGCACCATCGGCAAACTA
* **
68342530 AGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAAAATAGGCCCTTGGTCGTGCGGGAGCC
130 GGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCC
* * * *
68342595 TCGGCCACCATCGGCTCCTAGGTGCTGGGATGTGCGGGAGCCTCGGACACCATCGGCAAAC
195 TCGGGCACCATCGGCACCTAGGTGCTAGGATGTGCGGGAGCCTCGGACA-CATCGGCAACC
* *
68342656 TAGGCCCTTTGTCGTGCGGGAGCCTCGTGCACCATCGACACCTTGGTGCTTGGATGTGCCG-GAA
1 TAGGCCCTTGGTCGTGCGGGAGCCTCG-GCACCATCGGCACCTTGGTGCTTGGATGT-CCGAGAA
* *
68342720 CCTCGGGCACCATCGGCAACCTAGACCCTTGGTCGTGCGAGAGGCTCGGGCACCATCGGCAAAAT
64 CCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGGCTCGGGCACCATCGGCAAACT
* * *
68342785 AGGCCCTTGGTCGTGCGGGGGCCTCGGCCACCATCGGC-ACCTCGGCCCTTGGTCGTGCGGGAGC
129 AGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGC
* * *
68342849 CTCGGGCACCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGGGCAGCATCGGC-ACC
194 CTCGGGCACCATCGGCACCTAGGT-GCTAGGATGTGCGGGAGCCTCGGACA-CATCGGCAACC
* ** * ** * * * *
68342911 TCGGTGGCTAGGAGGTGCGGGAGCCTCGGACACCATCGGCAACTTGGTGCTTGGATGTGCGGGAG
1 TAGG-CCCTTGGTCGTGCGGGAGCCTCGG-CACCATCGGCACCTTGGTGCTTGGATGTCCGAGAA
68342976 CCTCGGGCACCCATCGGCA
64 CCTCGGGCA-CCATCGGCA
68342995 CCTTGGTGCC
Statistics
Matches: 522, Mismatches: 61, Indels: 22
0.86 0.10 0.04
Matches are distributed among these distances:
254 1 0.00
255 158 0.30
256 350 0.67
257 13 0.02
ACGTcount: A:0.16, C:0.32, G:0.34, T:0.18
Consensus pattern (254 bp):
TAGGCCCTTGGTCGTGCGGGAGCCTCGGCACCATCGGCACCTTGGTGCTTGGATGTCCGAGAACC
TCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGGCTCGGGCACCATCGGCAAACTAG
GCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCT
CGGGCACCATCGGCACCTAGGTGCTAGGATGTGCGGGAGCCTCGGACACATCGGCAACC
Found at i:68365253 original size:5 final size:5
Alignment explanation
Indices: 68365216--68365251 Score: 54
Period size: 5 Copynumber: 7.2 Consensus size: 5
68365206 AATTTTCTGT
* *
68365216 CGTGC CGTGC CGTGC CGTGC CGTGC CATGC CATGC C
1 CGTGC CGTGC CGTGC CGTGC CGTGC CGTGC CGTGC C
68365252 ATACTTCTTG
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
5 30 1.00
ACGTcount: A:0.06, C:0.42, G:0.33, T:0.19
Consensus pattern (5 bp):
CGTGC
Found at i:68365866 original size:24 final size:24
Alignment explanation
Indices: 68365830--68365876 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
68365820 GTTAGGTTCC
* * *
68365830 CGGCGGTGCTCCGACGATCCATCT
1 CGGCGATGATCCGACGAGCCATCT
68365854 CGGCGATGATCCGACGAGCCATC
1 CGGCGATGATCCGACGAGCCATC
68365877 CCAGAATATC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.17, C:0.36, G:0.30, T:0.17
Consensus pattern (24 bp):
CGGCGATGATCCGACGAGCCATCT
Found at i:68366006 original size:58 final size:59
Alignment explanation
Indices: 68365914--68366035 Score: 183
Period size: 58 Copynumber: 2.1 Consensus size: 59
68365904 TCCCTCTCCA
* * *
68365914 ATCCCAAAAGGTAGAATTCGGATACCGTTACATGTTCGGTACCCAATAATGAATGAATC
1 ATCCCAAAAGGTAGAATTCAGATACCGTTACATGTCCGGTACCCAACAATGAATGAATC
* * *
68365973 GTCCC-AAAGGTAGGATTCAGATACCGTTGCATGTCCGGTACCCAACAATGAATGAATC
1 ATCCCAAAAGGTAGAATTCAGATACCGTTACATGTCCGGTACCCAACAATGAATGAATC
68366031 ATCCC
1 ATCCC
68366036 TGTCCCTCCC
Statistics
Matches: 56, Mismatches: 7, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
58 52 0.93
59 4 0.07
ACGTcount: A:0.33, C:0.24, G:0.20, T:0.24
Consensus pattern (59 bp):
ATCCCAAAAGGTAGAATTCAGATACCGTTACATGTCCGGTACCCAACAATGAATGAATC
Found at i:68366747 original size:85 final size:85
Alignment explanation
Indices: 68366607--68367306 Score: 693
Period size: 85 Copynumber: 8.2 Consensus size: 85
68366597 CACATTGCTG
* * * * * * *
68366607 CTTGGACGTGCTGGAGCCTTGGAC-CCATCGGCAACCTAGGACGTTTGTCGTGCGGGAGCCTCGG
1 CTTGGATGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
* * *
68366671 GCACCACCGGCACCTTGGTG
66 GCACCATCGGCACCTAGGTC
*
68366691 CTTGGATGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGCGCGGGAGCCTC-G
1 CTTGGATGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
** * *
68366755 ATACCATCGGTAACCTAGGCC
66 GCACCATCGG-CACCTAGGTC
* * * *
68366776 CTTGG-TCGTGCGAGAGCCTCGGGCACCATCGG-AACCTAGGCCCCTGGTCGTGCGGAAGCCTCA
1 CTTGGAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCG
* * *
68366839 GCCACCATCGGTAACCTAGGCC
65 GGCACCATCGG-CACCTAGGTC
68366861 CTTGGATGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
1 CTTGGATGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
*
68366926 GCACGATCGGCAACCTAGG-C
66 GCACCATCGGC-ACCTAGGTC
* * * * *
68366946 CTT-GATCGTGCGAGAACCTCGGGCACCATCGGCAACCTAGG-CCTTGATCGTGCGAGAACCTCG
1 CTTGGAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCG
* *
68367009 GGCACCATCGGCACCTTGGTG
65 GGCACCATCGGCACCTAGGTC
* * ** *
68367030 CTTGGATGTGCGGGATCTTCGAACACCATCGGCAACCTCGGCCCTTGGTCGTGCGGGAGCCTCGG
1 CTTGGATGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
* * * *
68367095 GCACGACCGGCAACCTCGGCC
66 GCACCATCGGC-ACCTAGGTC
* * * * *
68367116 CTTGGTTGTGCGAGAGCCTCGGGCACCACCGGC-ACCTTGGTGCCTTGGAT-GTGCGGGAGCCTC
1 CTTGGATGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGG-CCCTTGG-TCGTGCGGGAGCCTC
* * * * *
68367179 GAGCAGCATTGGCACCTTGGTG
64 GGGCACCATCGGCACCTAGGTC
* * * * * **
68367201 CTTGGATGTGCGGGAGCCTCGAGAAGCATTGGC-ACCTTGGTGCTTGGAT-GTGCGGGAGCCTCG
1 CTTGGATGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCG
* *
68367264 GACACCATCGGCAACCTAGGAC
65 GGCACCATCGGC-ACCTAGGTC
* *
68367286 GTTGGATGTGCGGGTGCCTCG
1 CTTGGATGTGCGGGAGCCTCG
68367307 AGCAGCAGGG
Statistics
Matches: 516, Mismatches: 85, Indels: 29
0.82 0.13 0.05
Matches are distributed among these distances:
83 6 0.01
84 149 0.29
85 256 0.50
86 104 0.20
87 1 0.00
ACGTcount: A:0.16, C:0.31, G:0.34, T:0.19
Consensus pattern (85 bp):
CTTGGATGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
GCACCATCGGCACCTAGGTC
Found at i:68366963 original size:23 final size:23
Alignment explanation
Indices: 68366937--68367006 Score: 67
Period size: 23 Copynumber: 3.2 Consensus size: 23
68366927 CACGATCGGC
68366937 AACCTAGGCCTTGATCGTGCGAG
1 AACCTAGGCCTTGATCGTGCGAG
* * ***
68366960 AACCTCGGGCACCATCG-GC---
1 AACCTAGGCCTTGATCGTGCGAG
68366979 AACCTAGGCCTTGATCGTGCGAG
1 AACCTAGGCCTTGATCGTGCGAG
68367002 AACCT
1 AACCT
68367007 CGGGCACCAT
Statistics
Matches: 33, Mismatches: 10, Indels: 8
0.65 0.20 0.16
Matches are distributed among these distances:
19 12 0.36
20 2 0.06
22 2 0.06
23 17 0.52
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.19
Consensus pattern (23 bp):
AACCTAGGCCTTGATCGTGCGAG
Found at i:68366995 original size:19 final size:19
Alignment explanation
Indices: 68366930--68366995 Score: 51
Period size: 19 Copynumber: 3.3 Consensus size: 19
68366920 CCTCGGGCAC
68366930 GATCGGCAACCTAGGCCTT
1 GATCGGCAACCTAGGCCTT
* * **
68366949 GATCGTGCGAGAACCTCGGGCAC
1 GATCG-GC---AACCTAGGCCTT
*
68366972 CATCGGCAACCTAGGCCTT
1 GATCGGCAACCTAGGCCTT
68366991 GATCG
1 GATCG
68366996 TGCGAGAACC
Statistics
Matches: 33, Mismatches: 10, Indels: 8
0.65 0.20 0.16
Matches are distributed among these distances:
19 17 0.52
20 2 0.06
22 2 0.06
23 12 0.36
ACGTcount: A:0.21, C:0.32, G:0.29, T:0.18
Consensus pattern (19 bp):
GATCGGCAACCTAGGCCTT
Found at i:68367010 original size:212 final size:212
Alignment explanation
Indices: 68366631--68367306 Score: 645
Period size: 212 Copynumber: 3.2 Consensus size: 212
68366621 AGCCTTGGAC
* * * * **
68366631 CCATCGGCAACCTAGGACGTTTGTCGTGCGGGAGCCTCGGGCACCACCGGC-ACCTTGGTGCTTG
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCACCGGCAACCTAGGCCCTTG
* * * *
68366695 GATGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGCGCGGGAGCCTCGATACC
66 G-TGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGATCGCGCGAGAACCTCGACACC
* * *
68366760 ATCGGTAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGAACCTAGGCCCCTGG-T
130 ATCGGCAACCTAGGCCCTTGATCGTGCGAGAACCTCGGGCACCATCGGAACCTAGGCCCCTGGAT
*
68366824 CGTGCGGAAGCCTC-AGCCA
195 -GTGCGGAAGCCTCGA-ACA
* *
68366843 CCATCGGTAACCTAGGCCCTTGGAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTT
1 CCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCACCGGCAACCTAGGCCCTT
* * *
68366907 GGTCGTGCGGGAGCCTCGGGCACGATCGGCAACCTAGG-CCTTGATCGTGCGAGAACCTCGGGCA
65 GGT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGATCGCGCGAGAACCTC-GACA
* * ** *
68366971 CCATCGGCAACCTAGG-CCTTGATCGTGCGAGAACCTCGGGCACCATCGGCACCTTGGTGCTTGG
128 CCATCGGCAACCTAGGCCCTTGATCGTGCGAGAACCTCGGGCACCATCGGAACCTAGGCCCCTGG
* * *
68367035 ATGTGCGGGATCTTCGAACA
193 ATGTGCGGAAGCCTCGAACA
* * *
68367055 CCATCGGCAACCTCGGCCCTTGGTCGTGCGGGAGCCTCGGGCACGACCGGCAACCTCGGCCCTTG
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCACCGGCAACCTAGGCCCTTG
* * * * * * *
68367120 GTTGTGCGAGAGCCTCGGGCACCACCGGC-ACCTTGGTGCCTTGGAT-GTGCGGGAGCCTCGAGC
66 G-TGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGG-CCCTT-GATCGCGCGAGAACCTCGA-C
* * * ** * * * * * * * * ** *
68367183 AGCATTGGC-ACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGAGAAGCATTGGCACCTTGGTGCTT
127 ACCATCGGCAACCTAGGCCCTT-GATCGTGCGAGAACCTCGGGCACCATCGGAACCTAGGCCCCT
* *
68367246 GGATGTGCGGGAGCCTCGGACA
191 GGATGTGCGGAAGCCTCGAACA
* * *
68367268 CCATCGGCAACCTAGGACGTTGGAT-GTGCGGGTGCCTCG
1 CCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCG
68367307 AGCAGCAGGG
Statistics
Matches: 393, Mismatches: 56, Indels: 29
0.82 0.12 0.06
Matches are distributed among these distances:
211 7 0.02
212 204 0.52
213 175 0.45
214 7 0.02
ACGTcount: A:0.16, C:0.31, G:0.34, T:0.19
Consensus pattern (212 bp):
CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCACCGGCAACCTAGGCCCTTG
GTGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGATCGCGCGAGAACCTCGACACCA
TCGGCAACCTAGGCCCTTGATCGTGCGAGAACCTCGGGCACCATCGGAACCTAGGCCCCTGGATG
TGCGGAAGCCTCGAACA
Found at i:68367018 original size:23 final size:23
Alignment explanation
Indices: 68366950--68367018 Score: 65
Period size: 23 Copynumber: 3.2 Consensus size: 23
68366940 CTAGGCCTTG
68366950 ATCGTGCGAGAACCTCGGGCACC
1 ATCGTGCGAGAACCTCGGGCACC
* * ***
68366973 ATCG-GC---AACCTAGGCCTTG
1 ATCGTGCGAGAACCTCGGGCACC
68366992 ATCGTGCGAGAACCTCGGGCACC
1 ATCGTGCGAGAACCTCGGGCACC
68367015 ATCG
1 ATCG
68367019 GCACCTTGGT
Statistics
Matches: 32, Mismatches: 10, Indels: 8
0.64 0.20 0.16
Matches are distributed among these distances:
19 12 0.38
20 2 0.06
22 2 0.06
23 16 0.50
ACGTcount: A:0.22, C:0.33, G:0.29, T:0.16
Consensus pattern (23 bp):
ATCGTGCGAGAACCTCGGGCACC
Found at i:68367305 original size:43 final size:43
Alignment explanation
Indices: 68366607--68367306 Score: 662
Period size: 42 Copynumber: 16.5 Consensus size: 43
68366597 CACATTGCTG
* * * * *
68366607 CTTGGACGTGCTGGAGCCTTGGAC-CCATCGGCAACCTAGGAC
1 CTTGGATGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
* * * * **
68366649 GTTTG-TCGTGCGGGAGCCTCGGGCACCACCGGC-ACCTTGGTG
1 CTTGGAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
68366691 CTTGGATGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
1 CTTGGATGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
* ** *
68366734 CTTGG-TCGCGCGGGAGCCTC-GATACCATCGGTAACCTAGGCC
1 CTTGGAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
*
68366776 CTTGG-TCGTGCGAGAGCCTCGGGCACCATCGG-AACCTAGGCC
1 CTTGGAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
* * * * *
68366818 CCTGG-TCGTGCGGAAGCCTCAGCCACCATCGGTAACCTAGGCC
1 CTTGGAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
68366861 CTTGGATGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
1 CTTGGATGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
*
68366904 CTTGG-TCGTGCGGGAGCCTCGGGCACGATCGGCAACCTAGG-C
1 CTTGGAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
* *
68366946 CTT-GATCGTGCGAGAACCTCGGGCACCATCGGCAACCTAGG-C
1 CTTGGAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
* * * **
68366988 CTT-GATCGTGCGAGAACCTCGGGCACCATCGGC-ACCTTGGTG
1 CTTGGAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
* * ** *
68367030 CTTGGATGTGCGGGATCTTCGAACACCATCGGCAACCTCGGCC
1 CTTGGATGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
* * *
68367073 CTTGG-TCGTGCGGGAGCCTCGGGCACGACCGGCAACCTCGGCC
1 CTTGGAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
* * * * *
68367116 CTTGGTTGTGCGAGAGCCTCGGGCACCACCGGC-ACCTTGGTGC
1 CTTGGATGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGG-CC
* * * * **
68367159 CTTGGATGTGCGGGAGCCTCGAGCAGCATTGGC-ACCTTGGTG
1 CTTGGATGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
* * * * * **
68367201 CTTGGATGTGCGGGAGCCTCGAGAAGCATTGGC-ACCTTGGTG
1 CTTGGATGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
* *
68367243 CTTGGATGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGAC
1 CTTGGATGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
* *
68367286 GTTGGATGTGCGGGTGCCTCG
1 CTTGGATGTGCGGGAGCCTCG
68367307 AGCAGCAGGG
Statistics
Matches: 564, Mismatches: 77, Indels: 33
0.84 0.11 0.05
Matches are distributed among these distances:
41 7 0.01
42 298 0.53
43 257 0.46
44 2 0.00
ACGTcount: A:0.16, C:0.31, G:0.34, T:0.19
Consensus pattern (43 bp):
CTTGGATGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
Found at i:68367336 original size:43 final size:43
Alignment explanation
Indices: 68366995--68367342 Score: 246
Period size: 43 Copynumber: 8.2 Consensus size: 43
68366985 GGCCTTGATC
* * * * *
68366995 GTGCGAGAACCTCGGGCACCATCGGCACCTTGGT-GCTTGGAT
1 GTGCGGGAGCCTCGAGCAGCATTGGCACCTTGGTGGCTTGGAT
* * * * * * **
68367037 GTGCGGGATCTTCGAACACCATCGGCAACCTCGG-CCCTTGG-T
1 GTGCGGGAGCCTCGAGCAGCATTGGC-ACCTTGGTGGCTTGGAT
* ** * ** *
68367079 CGTGCGGGAGCCTCGGGCA-CGACCGGCAACCTCGG-CCCTTGGTT
1 -GTGCGGGAGCCTCGAGCAGC-ATTGGC-ACCTTGGTGGCTTGGAT
* * * ** *
68367123 GTGCGAGAGCCTCGGGCACCACCGGCACCTTGGTGCCTTGGAT
1 GTGCGGGAGCCTCGAGCAGCATTGGCACCTTGGTGGCTTGGAT
68367166 GTGCGGGAGCCTCGAGCAGCATTGGCACCTTGGT-GCTTGGAT
1 GTGCGGGAGCCTCGAGCAGCATTGGCACCTTGGTGGCTTGGAT
*
68367208 GTGCGGGAGCCTCGAGAAGCATTGGCACCTTGGT-GCTTGGAT
1 GTGCGGGAGCCTCGAGCAGCATTGGCACCTTGGTGGCTTGGAT
* * * **
68367250 GTGCGGGAGCCTCG-GACACCATCGGCAACCTAGGACG-TTGGAT
1 GTGCGGGAGCCTCGAG-CAGCATTGGC-ACCTTGGTGGCTTGGAT
* ** * *
68367293 GTGCGGGTGCCTCGAGCAGCAGGGGCACCCTGGTGGCTCGGAT
1 GTGCGGGAGCCTCGAGCAGCATTGGCACCTTGGTGGCTTGGAT
68367336 GTGCGGG
1 GTGCGGG
68367343 CTAAAGAAAA
Statistics
Matches: 257, Mismatches: 37, Indels: 23
0.81 0.12 0.07
Matches are distributed among these distances:
41 1 0.00
42 104 0.40
43 148 0.58
44 4 0.02
ACGTcount: A:0.15, C:0.29, G:0.37, T:0.20
Consensus pattern (43 bp):
GTGCGGGAGCCTCGAGCAGCATTGGCACCTTGGTGGCTTGGAT
Found at i:68372310 original size:47 final size:47
Alignment explanation
Indices: 68372258--68373052 Score: 1180
Period size: 47 Copynumber: 16.6 Consensus size: 47
68372248 GATAATTGTG
* *
68372258 ATGTGAATGTATATATATGTGATAAGGCCTAATGACCGATGTGATGA
1 ATGTGAAAGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
68372305 ATGTGAAAGTGTATATACATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAA--GTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
68372354 ATGTGAAAGTGTATATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAA--G--TATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
68372405 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
68372452 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
68372499 ATGTGAAAGTGTATATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAA--G--TATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
68372550 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
68372597 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGTCGATGTGATGA
1 ATGTGAAA--GTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
68372646 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
68372693 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAA--GTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
68372742 ATGTGAAAGTGTATATATATATGATAAGGCGTAATGGCCGATGTGATGA
1 ATGTGAAA--GTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
68372791 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
68372838 ATGTGGAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGT-GAA-AGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
68372887 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
68372934 ATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * * *
68372981 ATGTGAAAGTGTAT-TATGTGA-CAGAGCCGAGTGGCCAACGTGATGG
1 ATGTGAAAGTATATATATGTGATAAG-GCCTAATGGCCGATGTGATGA
* *
68373027 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAAAGTATATATATGTGATAAG
68373053 TCCCGAAGGG
Statistics
Matches: 699, Mismatches: 32, Indels: 33
0.91 0.04 0.04
Matches are distributed among these distances:
45 2 0.00
46 37 0.05
47 331 0.47
48 8 0.01
49 231 0.33
51 90 0.13
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (47 bp):
ATGTGAAAGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:68372530 original size:145 final size:141
Alignment explanation
Indices: 68372258--68373052 Score: 1261
Period size: 145 Copynumber: 5.5 Consensus size: 141
68372248 GATAATTGTG
* * *
68372258 ATGTGAATGTATATATATGTGATAAGGCCTAATGACCGATGTGATGAATGTGAAAGTGTATATAC
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT--
68372323 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATATGTGATAAGGCCT
64 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG----TATATATGTGATAAGGCCT
68372388 AATGGCCGATGTGATGA
125 AATGGCCGATGTGATGA
68372405 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
68372470 GTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATATGTGATAAGGCCTAA
66 GTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG----TATATATGTGATAAGGCCTAA
68372535 TGGCCGATGTGATGA
127 TGGCCGATGTGATGA
68372550 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATAT
*
68372615 ATGTGATAAGGCCTAATGGTCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATG
64 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATG
68372680 GCCGATGTGATGA
129 GCCGATGTGATGA
68372693 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TAT
* *
68372758 ATATATGATAAGGCGTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAA
62 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAA
68372823 TGGCCGATGTGATGA
127 TGGCCGATGTGATGA
*
68372838 ATGTGGAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
* *
68372903 ATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATGAGGCCTAATG
64 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATG
68372968 GCCGATGTGATGA
129 GCCGATGTGATGA
* * * * * * *
68372981 ATGTGAAAGTGTAT-TATGTGA-CAGAGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAA
1 ATGTGAAAGTGTATATATGTGATAAG-GCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
68373044 TGTGATAAG
65 TGTGATAAG
68373053 TCCCGAAGGG
Statistics
Matches: 623, Mismatches: 20, Indels: 17
0.94 0.03 0.03
Matches are distributed among these distances:
139 2 0.00
140 48 0.08
141 3 0.00
143 136 0.22
145 328 0.53
147 106 0.17
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (141 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
GTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGC
CGATGTGATGA
Done.