Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100714657
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 3970000 characters in sequence are not A, C, G, or T
File 216 of 318
Found at i:68372640 original size:96 final size:94
Alignment explanation
Indices: 68372258--68373052 Score: 1261
Period size: 96 Copynumber: 8.3 Consensus size: 94
68372248 GATAATTGTG
* * *
68372258 ATGTGAATGTATATATATGTGATAAGGCCTAATGACCGATGTGATGAATGTGAAAGTGTATATAC
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT--
68372323 ATGTGATAAGGCCTAATGGCCGATGTGATGA
64 ATGTGATAAGGCCTAATGGCCGATGTGATGA
68372354 ATGTGAAAGTGTATATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
1 ATGTGAAAGTG----TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
68372419 ATATGTGATAAGGCCTAATGGCCGATGTGATGA
62 ATATGTGATAAGGCCTAATGGCCGATGTGATGA
68372452 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG----TAT
68372517 ATATGTGATAAGGCCTAATGGCCGATGTGATGA
62 ATATGTGATAAGGCCTAATGGCCGATGTGATGA
68372550 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATAT
*
68372615 ATGTGATAAGGCCTAATGGTCGATGTGATGA
64 ATGTGATAAGGCCTAATGGCCGATGTGATGA
68372646 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATAT
68372711 ATGTGATAAGGCCTAATGGCCGATGTGATGA
64 ATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
68372742 ATGTGAAAGTGTATATATATATGATAAGGCGTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
68372807 ATGTGATAAGGCCTAATGGCCGATGTGATGA
64 ATGTGATAAGGCCTAATGGCCGATGTGATGA
*
68372838 ATGTGGAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
*
68372903 ATGTGATAAGGCCTAATAGCCGATGTGATGA
64 ATGTGATAAGGCCTAATGGCCGATGTGATGA
*
68372934 ATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT-TAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
* * * * * *
68372998 GTGA-CAGAGCCGAGTGGCCAACGTGATGG
66 GTGATAAG-GCCTAATGGCCGATGTGATGA
*
68373027 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
68373053 TCCCGAAGGG
Statistics
Matches: 666, Mismatches: 22, Indels: 25
0.93 0.03 0.04
Matches are distributed among these distances:
92 2 0.00
93 46 0.07
94 96 0.14
96 290 0.44
98 181 0.27
100 51 0.08
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (94 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
GTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:68379567 original size:5 final size:5
Alignment explanation
Indices: 68379557--68379590 Score: 50
Period size: 5 Copynumber: 6.8 Consensus size: 5
68379547 TTTAATTTTC
* *
68379557 TGCCG TGCCG TGCCG TGCCA TGCCA TGCCG TGCC
1 TGCCG TGCCG TGCCG TGCCG TGCCG TGCCG TGCC
68379591 ATACTTCTTG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
5 27 1.00
ACGTcount: A:0.06, C:0.41, G:0.32, T:0.21
Consensus pattern (5 bp):
TGCCG
Found at i:68380049 original size:24 final size:24
Alignment explanation
Indices: 68379984--68380043 Score: 113
Period size: 23 Copynumber: 2.5 Consensus size: 24
68379974 AAAAAGTGTC
68379984 CCTGTTTCAGACATCTGAACATGT
1 CCTGTTTCAGACATCTGAACATGT
68380008 CCTG-TTCAGACATCTGAACATGT
1 CCTGTTTCAGACATCTGAACATGT
68380031 CCTGTTTCAGACA
1 CCTGTTTCAGACA
68380044 CATGAATGTC
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
23 23 0.66
24 12 0.34
ACGTcount: A:0.25, C:0.27, G:0.17, T:0.32
Consensus pattern (24 bp):
CCTGTTTCAGACATCTGAACATGT
Found at i:68380362 original size:58 final size:59
Alignment explanation
Indices: 68380271--68380391 Score: 190
Period size: 58 Copynumber: 2.1 Consensus size: 59
68380261 CCCTCCCCAA
* * *
68380271 TCCCAAAAGGTAGAATTCGGATATCGTTACATGTTCGGTACCCAATAATGAATGAATCG
1 TCCCAAAAGGTAGAATTCGGATACCGTTACATGTCCGGTACCCAACAATGAATGAATCG
* *
68380330 TCCC-AAAGGTAGGATTCGGATACCGTTGCATGTCCGGTACCCAACAATGAATGAATCG
1 TCCCAAAAGGTAGAATTCGGATACCGTTACATGTCCGGTACCCAACAATGAATGAATCG
68380388 TCCC
1 TCCC
68380392 TGTCCCTCCC
Statistics
Matches: 57, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
58 53 0.93
59 4 0.07
ACGTcount: A:0.31, C:0.23, G:0.21, T:0.25
Consensus pattern (59 bp):
TCCCAAAAGGTAGAATTCGGATACCGTTACATGTCCGGTACCCAACAATGAATGAATCG
Found at i:68380816 original size:24 final size:24
Alignment explanation
Indices: 68380784--68380837 Score: 90
Period size: 24 Copynumber: 2.2 Consensus size: 24
68380774 CCGGTTAGGT
*
68380784 TCCCGGCGGTGCTTCGGCGAGCCA
1 TCCCGGCGGTGCTCCGGCGAGCCA
*
68380808 TCCCGGCGGTTCTCCGGCGAGCCA
1 TCCCGGCGGTGCTCCGGCGAGCCA
68380832 TCCCGG
1 TCCCGG
68380838 AATATCAAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.07, C:0.41, G:0.35, T:0.17
Consensus pattern (24 bp):
TCCCGGCGGTGCTCCGGCGAGCCA
Found at i:68381082 original size:42 final size:42
Alignment explanation
Indices: 68380986--68381451 Score: 533
Period size: 42 Copynumber: 11.0 Consensus size: 42
68380976 CATATTGCTG
* * * * * * *
68380986 CTTGGACGTGCTGGAGCCTTGGACGCCATCGTCAACCTAGGAC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCC
* * * * * * *
68381029 GTTTGTCGTGCGGGAGCCTCAGGCACCACCGGTACCTTGGCG
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
* *
68381071 CTTGGTCGTGCGGGAGCCTCGGCCACCATCGACACCTAGGACC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGG-CC
* ** * *
68381114 C-TGGTCATGTAGGAGCTTCGGCCACCATCGGCAACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCC
*
68381156 CTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
* * **
68381198 CTTGGTCGTGCAGGAGCCTCGGGCACCATCGGCACCTTGGTG
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
* * *
68381240 CTTAGAT-GTGCGGGAGCCTTGGGCACCATCGGCAACTTAGGCC
1 CTT-GGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCC
*
68381283 CCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCC
* * *
68381326 CTTGGTCGTACGAGAGCCTCGGG-ACCATTGGCACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
* *
68381367 CTTGGTGGTGCGGGAGCCTCGGCCACCATCGGCACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
*
68381409 CTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
68381451 C
1 C
68381452 GTAAGGCATA
Statistics
Matches: 354, Mismatches: 62, Indels: 15
0.82 0.14 0.03
Matches are distributed among these distances:
41 28 0.08
42 207 0.58
43 119 0.34
ACGTcount: A:0.15, C:0.33, G:0.33, T:0.18
Consensus pattern (42 bp):
CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
Found at i:68381202 original size:127 final size:124
Alignment explanation
Indices: 68381011--68381451 Score: 510
Period size: 127 Copynumber: 3.5 Consensus size: 124
68381001 GCCTTGGACG
* * * * * * * * * *
68381011 CCATCGTCAACCTAGGACGTTTGTCGTGCGGGAGCCTCAGGCACCACCGGTACCTTGGCGCTTGG
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGG
* *
68381076 TCGTGCGGGAGCCTCGGCCACCATCGACACCTAGGACCCTGGTCATGTAGGAGCTTCGGCCA
66 TCGTGCGGGAGCCTCGG-CACCATCGGCACCTAGG-CCCTGGT-ATGTGGGAGCTTCGGCCA
68381138 CCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGG
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGG
* * * * * *
68381203 TCGTGCAGGAGCCTCGGGCACCATCGGCACCTTGGTGCTTAG-ATGTGCGGGAGCCTT-GGGCA
66 TCGTGCGGGAGCCTC-GGCACCATCGGCACCTAGG-CCCTGGTATGT--GGGAG-CTTCGGCCA
* * *
68381265 CCATCGGCAACTTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTG
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTG
* * * * * * *
68381330 GTCGTACGAGAGCCTCGGGACCATTGGCACCTAGGCCCTTGGTGGTGCGGGAGCCTCGGCCA
65 GTCGTGCGGGAGCCTCGGCACCATCGGCACCTAGGCCC-TGGT-ATGTGGGAGCTTCGGCCA
68381392 CCATCGGC-ACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTAGGCCC
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTAGGCCC
68381452 GTAAGGCATA
Statistics
Matches: 267, Mismatches: 38, Indels: 20
0.82 0.12 0.06
Matches are distributed among these distances:
125 14 0.05
126 42 0.16
127 178 0.67
128 31 0.12
129 2 0.01
ACGTcount: A:0.15, C:0.34, G:0.32, T:0.18
Consensus pattern (124 bp):
CCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGG
TCGTGCGGGAGCCTCGGCACCATCGGCACCTAGGCCCTGGTATGTGGGAGCTTCGGCCA
Found at i:68381216 original size:169 final size:167
Alignment explanation
Indices: 68381033--68381448 Score: 582
Period size: 169 Copynumber: 2.5 Consensus size: 167
68381023 TAGGACGTTT
* * *
68381033 GTCGTGCGGGAGCCTCAGGCACCACCGGTACCTTGGCGCTTGGTCGTGCGGGAGCCTCGGCCACC
1 GTCGTGCGGGAGCCTC-GGCACCATCGGCACCTTGGCGCTTGGTCGTGCGGGAGCCTCGGGCACC
* * *
68381098 ATCGACACCTAGGACCCTGGTCATGTAGGAGCTTCGGCCACCATCGGCAACCTAGGCCCTTGGTC
65 ATCGGCACCTAGGACCCTGGTCATGCAGGAGCCTCGGCCACCATCGGCAACCTAGGCCCTTGGTC
*
68381163 GTGCGAGAGCCTCGGGCACCATCGGCACCTAGGCCCTTG
130 GTACGAGAGCCTCGGG-ACCATCGGCACCTAGGCCCTTG
* * * *
68381202 GTCGTGCAGGAGCCTCGGGCACCATCGGCACCTTGGTGCTTAGAT-GTGCGGGAGCCTTGGGCAC
1 GTCGTGCGGGAGCCTC-GGCACCATCGGCACCTTGGCGCTT-GGTCGTGCGGGAGCCTCGGGCAC
* * * * *
68381266 CATCGGCAACTTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG
64 CATCGGC-ACCTAGGACCCTGGTCATGCAGGAGCCTCGGCCACCATCGGCAACCTAGGCCCTTGG
*
68381331 TCGTACGAGAGCCTCGGGACCATTGGCACCTAGGCCCTTG
128 TCGTACGAGAGCCTCGGGACCATCGGCACCTAGGCCCTTG
* * * *
68381371 GTGGTGCGGGAGCCTCGGCCACCATCGGCACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACC
1 GTCGTGCGGGAGCCTCGG-CACCATCGGCACCTTGGCGCTTGGTCGTGCGGGAGCCTCGGGCACC
68381436 ATCGGCACCTAGG
65 ATCGGCACCTAGG
68381449 CCCGTAAGGC
Statistics
Matches: 216, Mismatches: 27, Indels: 9
0.86 0.11 0.04
Matches are distributed among these distances:
168 10 0.05
169 137 0.63
170 69 0.32
ACGTcount: A:0.15, C:0.34, G:0.33, T:0.18
Consensus pattern (167 bp):
GTCGTGCGGGAGCCTCGGCACCATCGGCACCTTGGCGCTTGGTCGTGCGGGAGCCTCGGGCACCA
TCGGCACCTAGGACCCTGGTCATGCAGGAGCCTCGGCCACCATCGGCAACCTAGGCCCTTGGTCG
TACGAGAGCCTCGGGACCATCGGCACCTAGGCCCTTG
Found at i:68384329 original size:10 final size:10
Alignment explanation
Indices: 68384314--68384347 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
68384304 TTCAATTTTC
*
68384314 TGCCGTGCCG
1 TGCCGTGCCA
68384324 TGCCGTGCCA
1 TGCCGTGCCA
*
68384334 TGCCATGCCA
1 TGCCGTGCCA
68384344 TGCC
1 TGCC
68384348 ATACTTCTTG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
10 22 1.00
ACGTcount: A:0.09, C:0.41, G:0.29, T:0.21
Consensus pattern (10 bp):
TGCCGTGCCA
Found at i:68385246 original size:24 final size:24
Alignment explanation
Indices: 68385214--68385262 Score: 80
Period size: 24 Copynumber: 2.0 Consensus size: 24
68385204 CCGGTTAGGT
*
68385214 TCCCGGCGGTGCTCCGACGAGCCA
1 TCCCAGCGGTGCTCCGACGAGCCA
*
68385238 TCCCAGCGGTGCTCCGGCGAGCCA
1 TCCCAGCGGTGCTCCGACGAGCCA
68385262 T
1 T
68385263 TCTGGAATAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.12, C:0.41, G:0.33, T:0.14
Consensus pattern (24 bp):
TCCCAGCGGTGCTCCGACGAGCCA
Found at i:68385595 original size:85 final size:85
Alignment explanation
Indices: 68385438--68385951 Score: 378
Period size: 85 Copynumber: 6.1 Consensus size: 85
68385428 AGTGCGGGAG
* * * * * * * *
68385438 CATCGGCACATTGCTGCTTGGA-CGTGCTG-GAGCCTTGGACGCCATCGGCAACCTAGGACGTTT
1 CATCGGCACCTTGGTCCTTGGATCGTGC-GAGAGCCTCGGGCACCATCGGCAACCTAGG-CCTTG
68385501 GTCGTGCGGGAGCCTCGGGCAC
64 GTCGTGCGGGAGCCTCGGGCAC
* * * *
68385523 CACCGGCACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGG
1 CATCGGCACCTTGGTCCTTGGATCGTGCGAGAGCCTCGGGCACCATCGGCAACCTAGG-CCTTGG
* **
68385587 TCGCGCGGGAG-CTC-GATAC
65 TCGTGCGGGAGCCTCGGGCAC
* * * *
68385606 CATCGACAACCTAGGCCCTTGG-TCGTGCGAGAGCCTCGGGCACCATCGG-AACCTAGGCCTTGA
1 CATCGGC-ACCTTGGTCCTTGGATCGTGCGAGAGCCTCGGGCACCATCGGCAACCTAGGCCTTGG
* *
68385669 TCGTGCGAGAACCTCGGGCAC
65 TCGTGCGGGAGCCTCGGGCAC
* * * * *
68385690 CATCGGTAACCTAGG-CCTT-GATCGTGCGAGAACCTCGGGCACCATCGGC-ACCTTGGTGCTTG
1 CATCGG-CACCTTGGTCCTTGGATCGTGCGAGAGCCTCGGGCACCATCGGCAACCTAGG-CCTTG
**
68385752 GAT-GTATGGGAGCCTCGGGCAC
64 G-TCGTGCGGGAGCCTCGGGCAC
* * *
68385774 CATCGGCAACCTCGGCCCTTGG-TCGTGCGAGAGCCTCGGGCACCATCGGC-ACCTTGGTGCCTT
1 CATCGGC-ACCTTGGTCCTTGGATCGTGCGAGAGCCTCGGGCACCATCGGCAACC-TAG-GCCTT
* *
68385837 GGAT-GTGCGGGAGCCTCGAGCAG
63 GG-TCGTGCGGGAGCCTCGGGCAC
* * * * * * * * * * *
68385860 CATTGGTACCTTGGTGCTTGGAT-GTGCGGGAGCCTTGAGAAGCATTGGC-ACCTTGGTGCTTGG
1 CATCGGCACCTTGGTCCTTGGATCGTGCGAGAGCCTCGGGCACCATCGGCAACCTAGG-CCTTGG
* *
68385923 AT-GTACGGGAGCCTCGGACAC
65 -TCGTGCGGGAGCCTCGGGCAC
68385944 CATCGGCA
1 CATCGGCA
68385952 ACCTAGGACG
Statistics
Matches: 347, Mismatches: 64, Indels: 37
0.77 0.14 0.08
Matches are distributed among these distances:
82 13 0.04
83 57 0.16
84 115 0.33
85 130 0.37
86 31 0.09
87 1 0.00
ACGTcount: A:0.17, C:0.30, G:0.33, T:0.20
Consensus pattern (85 bp):
CATCGGCACCTTGGTCCTTGGATCGTGCGAGAGCCTCGGGCACCATCGGCAACCTAGGCCTTGGT
CGTGCGGGAGCCTCGGGCAC
Found at i:68385680 original size:23 final size:23
Alignment explanation
Indices: 68385654--68385724 Score: 62
Period size: 23 Copynumber: 3.3 Consensus size: 23
68385644 GGCACCATCG
68385654 GAACCTAGGCCTTGATCGTGCGA
1 GAACCTAGGCCTTGATCGTGCGA
* * * *
68385677 GAACCTCGGGC---ACCAT-CG-
1 GAACCTAGGCCTTGATCGTGCGA
68385695 GTAACCTAGGCCTTGATCGTGCGA
1 G-AACCTAGGCCTTGATCGTGCGA
68385719 GAACCT
1 GAACCT
68385725 CGGGCACCAT
Statistics
Matches: 34, Mismatches: 8, Indels: 12
0.63 0.15 0.22
Matches are distributed among these distances:
18 1 0.03
19 10 0.29
20 3 0.09
22 3 0.09
23 16 0.47
24 1 0.03
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.20
Consensus pattern (23 bp):
GAACCTAGGCCTTGATCGTGCGA
Found at i:68385736 original size:23 final size:23
Alignment explanation
Indices: 68385668--68385736 Score: 56
Period size: 23 Copynumber: 3.2 Consensus size: 23
68385658 CTAGGCCTTG
68385668 ATCGTGCGAGAACCTCGGGCACC
1 ATCGTGCGAGAACCTCGGGCACC
* * * ***
68385691 ATC--G-G-TAACCTAGGCCTTG
1 ATCGTGCGAGAACCTCGGGCACC
68385710 ATCGTGCGAGAACCTCGGGCACC
1 ATCGTGCGAGAACCTCGGGCACC
68385733 ATCG
1 ATCG
68385737 GCACCTTGGT
Statistics
Matches: 30, Mismatches: 12, Indels: 8
0.60 0.24 0.16
Matches are distributed among these distances:
19 11 0.37
20 1 0.03
21 2 0.07
22 1 0.03
23 15 0.50
ACGTcount: A:0.22, C:0.32, G:0.29, T:0.17
Consensus pattern (23 bp):
ATCGTGCGAGAACCTCGGGCACC
Found at i:68385981 original size:43 final size:43
Alignment explanation
Indices: 68385454--68385974 Score: 409
Period size: 42 Copynumber: 12.3 Consensus size: 43
68385444 CACATTGCTG
* * * *
68385454 CTTGGA-CGTGCTGGAGCCTTGGACGCCATCGGCAACCTAGGAC
1 CTTGGATCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGG-C
* * * * *
68385497 GTTTG-TCGTGCGGGAGCCTCGGGCACCACCGGC-ACCTTGGTG
1 CTTGGATCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGG-C
68385539 CTTGGAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
1 CTTGGATCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGG-C
* * ** *
68385582 CCTGG-TCGCGCGGGAG-CTC-GATACCATCGACAACCTAGGCC
1 CTTGGATCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGG-C
*
68385623 CTTGG-TCGTGCGAGAGCCTCGGGCACCATCGG-AACCTAGGC
1 CTTGGATCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGC
* * *
68385664 CTT-GATCGTGCGAGAACCTCGGGCACCATCGGTAACCTAGGC
1 CTTGGATCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGC
* * * *
68385706 CTT-GATCGTGCGAGAACCTCGGGCACCATCGGC-ACCTTGGTG
1 CTTGGATCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGG-C
** *
68385748 CTTGGAT-GTATGGGAGCCTCGGGCACCATCGGCAACCTCGGCC
1 CTTGGATCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGG-C
* *
68385791 CTTGG-TCGTGCGAGAGCCTCGGGCACCATCGGC-ACCTTGGTGC
1 CTTGGATCGTGCGGGAGCCTCGGGCACCATCGGCAACC-TAG-GC
* * * * * *
68385834 CTTGGAT-GTGCGGGAGCCTCGAGCAGCATTGG-TACCTTGGTG
1 CTTGGATCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGG-C
* * * * * * *
68385876 CTTGGAT-GTGCGGGAGCCTTGAGAAGCATTGGC-ACCTTGGTG
1 CTTGGATCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGG-C
* *
68385918 CTTGGAT-GTACGGGAGCCTCGGACACCATCGGCAACCTAGGAC
1 CTTGGATCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGG-C
*
68385961 GTTGGAT-GTGCGGG
1 CTTGGATCGTGCGGG
68385975 TACCTCGAGC
Statistics
Matches: 397, Mismatches: 62, Indels: 38
0.80 0.12 0.08
Matches are distributed among these distances:
40 1 0.00
41 69 0.17
42 186 0.47
43 139 0.35
44 2 0.01
ACGTcount: A:0.17, C:0.29, G:0.34, T:0.20
Consensus pattern (43 bp):
CTTGGATCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGC
Found at i:68390604 original size:42 final size:43
Alignment explanation
Indices: 68390501--68391496 Score: 1073
Period size: 43 Copynumber: 23.5 Consensus size: 43
68390491 CACATTGCTA
* * * * * *
68390501 CTTGGACGTGCTGGAGCCTTGGACGCCATCGGCAACCTAGGAC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
* * * * **
68390544 GTTTGTCGTGCGGGAGCCTCGGGCACCACCGGC-ACCTTGGTG
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
* *
68390586 CTTGGAT-GTGCGGGAGCCTAGGGCACCATCAGCAACCTAGGCC
1 CTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
* ** ** *
68390629 CCTGGTCACGCGGGAGCCTC-GATACTATCGGCAACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
* *
68390671 CTTGGTCGTGCGAGAGCCTCGGGCACGATCGG-AACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
* * *
68390713 CCTGGTCGTGCGGGAGCCTCGGCCACCATCGGCAACCTAGGCG
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
*
68390756 CTTGGTCGTGCGGGAGCCTCGGCCACCATCGGC-ACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
* * ** * *
68390798 CCTGGTCATGTAGGAGCTTCGGCCACCATCGGCAACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
* *
68390841 CTTGGTCGTGCGAGAGCCTTGGGCACCATCGGC-ACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
* * **
68390883 CTTGGTCGTGCGAGAGCCTCGGGCACCATCGGC-ACCTTGGTG
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
*
68390925 CTTGGAT-GTGCGGGAGCCTTGGGCACCATCGGCAACCTAGGCC
1 CTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
* * *
68390968 CCTGGTCGTGCAGGAGCCTCGAGCACCATCGGCAACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
* * *
68391011 ATTGGTCGTGCGAGAGCCTCGGG-ACCATTGGC-ACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
*
68391052 CTTGGTCGTGCGGGAGCCTCGGCCACCATCGGC-ACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
68391094 CTTGGAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
1 CTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
*
68391137 CCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGG-C
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
* * *
68391179 CTTGATCGTGCGAGAACCTC-GGCACCATCGGCAACCTAGG-C
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
* * * * * **
68391220 CTTGATCGTGTGAGAACCTCGGGCACCATCGGC-ACCTTGGTG
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
* ** *
68391262 CTTGGAT-GTGCAGGAGCCTCGAACACCATCGGCAACCTTGGCC
1 CTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
* *
68391305 CTTGGTCGTGCGGGAGCCTCGGGCACCATCTGCAACCTTGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
* * *
68391348 CTTGGTCGTGCGGGAGCCTCTGGCACCATCGGC-ACCTTGGTGC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGG-CC
* * * * * **
68391391 CTTAGAT-GTGCGGGAGCCTCGAGCAGCATTGGC-ACCTTGGTG
1 CTT-GGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
* *
68391433 CTTGGAT-GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGAC
1 CTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
* *
68391476 GTTGGAT-GTGCGGGTGCCTCG
1 CTTGG-TCGTGCGGGAGCCTCG
68391497 AGCAGTAGGG
Statistics
Matches: 812, Mismatches: 119, Indels: 44
0.83 0.12 0.05
Matches are distributed among these distances:
41 76 0.09
42 361 0.44
43 373 0.46
44 2 0.00
ACGTcount: A:0.16, C:0.32, G:0.33, T:0.19
Consensus pattern (43 bp):
CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
Found at i:68390644 original size:85 final size:87
Alignment explanation
Indices: 68390501--68391473 Score: 1075
Period size: 85 Copynumber: 11.5 Consensus size: 87
68390491 CACATTGCTA
* * * * * ** *
68390501 CTTGGA-CGTGCTGGAGCCTTGGACGCCATCGGCAACCTAGGACGTTTGTCGTGCGGGAGCCTCG
1 CTTGGATCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCG
* * **
68390565 GGCACCACCGGC-ACCTTGGTG
66 GGCACCATCGGCAACCTAGGCC
* * **
68390586 CTTGGAT-GTGCGGGAGCCTAGGGCACCATCAGCAACCTAGGCCCCTGGTCACGCGGGAGCCTC-
1 CTTGGATCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCG
** *
68390649 GATACTATCGGCAACCTAGGCC
66 GGCACCATCGGCAACCTAGGCC
* *
68390671 CTTGG-TCGTGCGAGAGCCTCGGGCACGATCGG-AACCTAGGCCCCTGGTCGTGCGGGAGCCTCG
1 CTTGGATCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCG
* *
68390734 GCCACCATCGGCAACCTAGGCG
66 GGCACCATCGGCAACCTAGGCC
* * ** *
68390756 CTTGG-TCGTGCGGGAGCCTCGGCCACCATCGGC-ACCTAGGCCCCTGGTCATGTAGGAGCTTCG
1 CTTGGATCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCG
*
68390819 GCCACCATCGGCAACCTAGGCC
66 GGCACCATCGGCAACCTAGGCC
* * * *
68390841 CTTGG-TCGTGCGAGAGCCTTGGGCACCATCGGC-ACCTAGGCCCTTGGTCGTGCGAGAGCCTCG
1 CTTGGATCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCG
* **
68390904 GGCACCATCGGC-ACCTTGGTG
66 GGCACCATCGGCAACCTAGGCC
* *
68390925 CTTGGAT-GTGCGGGAGCCTTGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCAGGAGCCTCG
1 CTTGGATCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCG
*
68390989 AGCACCATCGGCAACCTAGGCC
66 GGCACCATCGGCAACCTAGGCC
* * * *
68391011 ATTGG-TCGTGCGAGAGCCTCGGG-ACCATTGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCG
1 CTTGGATCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCG
*
68391073 GCCACCATCGGC-ACCTAGGCC
66 GGCACCATCGGCAACCTAGGCC
68391094 CTTGGAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCG
1 CTTGGATCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCG
68391158 GGCACCATCGGCAACCTAGG-C
66 GGCACCATCGGCAACCTAGGCC
* * * * * * *
68391179 CTT-GATCGTGCGAGAACCTC-GGCACCATCGGCAACCTAGG-CCTTGATCGTGTGAGAACCTCG
1 CTTGGATCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCG
* **
68391241 GGCACCATCGGC-ACCTTGGTG
66 GGCACCATCGGCAACCTAGGCC
* ** * *
68391262 CTTGGAT-GTGCAGGAGCCTCGAACACCATCGGCAACCTTGGCCCTTGGTCGTGCGGGAGCCTCG
1 CTTGGATCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCG
* *
68391326 GGCACCATCTGCAACCTTGGCC
66 GGCACCATCGGCAACCTAGGCC
* * * * *
68391348 CTTGG-TCGTGCGGGAGCCTCTGGCACCATCGGC-ACCTTGGTGCCTTAGAT-GTGCGGGAGCCT
1 CTTGGATCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGG-CCCCT-GGTCGTGCGGGAGCCT
* * * * **
68391410 CGAGCAGCATTGGC-ACCTTGGTG
64 CGGGCACCATCGGCAACCTAGGCC
*
68391433 CTTGGAT-GTGCGGGAGCCTCGGACACCATCGGCAACCTAGG
1 CTTGGATCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGG
68391474 ACGTTGGATG
Statistics
Matches: 757, Mismatches: 107, Indels: 47
0.83 0.12 0.05
Matches are distributed among these distances:
82 6 0.01
83 70 0.09
84 163 0.22
85 418 0.55
86 98 0.13
87 2 0.00
ACGTcount: A:0.16, C:0.33, G:0.33, T:0.18
Consensus pattern (87 bp):
CTTGGATCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCG
GGCACCATCGGCAACCTAGGCC
Found at i:68390688 original size:127 final size:129
Alignment explanation
Indices: 68390501--68391496 Score: 1073
Period size: 127 Copynumber: 7.8 Consensus size: 129
68390491 CACATTGCTA
* * * * * * * *
68390501 CTTGGACGTGCTGGAGCCTTGGACGCCATCGGCAACCTAGGACGTTTGTCGTGCGGGAGCCTCGG
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
* * ** * *
68390566 GCACCACCGGC-ACCTTGGTGCTTGGAT-GTGCGGGAGCCTAGGGCACCATCAGCAACCTAGGCC
66 GCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
* ** ** * *
68390629 CCTGGTCACGCGGGAGCCTC-GATACTATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGG
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
* * * *
68390693 GCACGATCGG-AACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGCCACCATCGGCAACCTAGGCG
66 GCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
* * * ** *
68390756 CTTGGTCGTGCGGGAGCCTCGGCCACCATCGGC-ACCTAGGCCCCTGGTCATGTAGGAGCTTCGG
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
* * *
68390820 CCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTTGGGCACCATCGGC-ACCTAGGCC
66 GCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
* * ** *
68390883 CTTGGTCGTGCGAGAGCCTCGGGCACCATCGGC-ACCTTGGTGCTTGGAT-GTGCGGGAGCCTTG
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCG
* * *
68390946 GGCACCATCGGCAACCTAGGCCCCTGGTCGTGCAGGAGCCTCGAGCACCATCGGCAACCTAGGCC
65 GGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
* * *
68391011 ATTGGTCGTGCGAGAGCCTCGGG-ACCATTGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
*
68391074 CCACCATCGGC-ACCTAGGCCCTTGGAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
66 GCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
* * * *
68391137 CCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGG-CCTTGATCGTGCGAGAACCTC-G
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
* * * * * **
68391200 GCACCATCGGCAACCTAGG-CCTTGATCGTGTGAGAACCTCGGGCACCATCGGC-ACCTTGGTG
66 GCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
* ** *
68391262 CTTGGAT-GTGCAGGAGCCTCGAACACCATCGGCAACCTTGGCCCTTGGTCGTGCGGGAGCCTCG
1 CTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCG
* * * * *
68391326 GGCACCATCTGCAACCTTGGCCCTTGGTCGTGCGGGAGCCTCTGGCACCATCGGC-ACCTTGGTG
65 GGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGG-C
68391390 C
129 C
* * * * * **
68391391 CTTAGAT-GTGCGGGAGCCTCGAGCAGCATTGGC-ACCTTGGTGCTTGGAT-GTGCGGGAGCCTC
1 CTT-GGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTC
* * * *
68391453 GGACACCATCGGCAACCTAGGACGTTGGAT-GTGCGGGTGCCTCG
64 GGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCG
68391497 AGCAGTAGGG
Statistics
Matches: 733, Mismatches: 115, Indels: 40
0.83 0.13 0.05
Matches are distributed among these distances:
125 41 0.06
126 127 0.17
127 339 0.46
128 197 0.27
129 28 0.04
130 1 0.00
ACGTcount: A:0.16, C:0.32, G:0.33, T:0.19
Consensus pattern (129 bp):
CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
GCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
Found at i:68391196 original size:23 final size:23
Alignment explanation
Indices: 68391170--68391238 Score: 60
Period size: 23 Copynumber: 3.2 Consensus size: 23
68391160 CACCATCGGC
68391170 AACCTAGGCCTTGATCGTGCGAG
1 AACCTAGGCCTTGATCGTGCGAG
* *
68391193 AACCTCGGCAC--CATCG-GC---
1 AACCTAGGC-CTTGATCGTGCGAG
*
68391211 AACCTAGGCCTTGATCGTGTGAG
1 AACCTAGGCCTTGATCGTGCGAG
68391234 AACCT
1 AACCT
68391239 CGGGCACCAT
Statistics
Matches: 34, Mismatches: 5, Indels: 14
0.64 0.09 0.26
Matches are distributed among these distances:
17 1 0.03
18 8 0.24
19 4 0.12
20 1 0.03
21 2 0.06
22 4 0.12
23 13 0.38
24 1 0.03
ACGTcount: A:0.23, C:0.30, G:0.26, T:0.20
Consensus pattern (23 bp):
AACCTAGGCCTTGATCGTGCGAG
Found at i:68399442 original size:14 final size:14
Alignment explanation
Indices: 68399423--68399449 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
68399413 ACACATGAAT
68399423 GTCGCCTGGTAGCA
1 GTCGCCTGGTAGCA
68399437 GTCGCCTGGTAGC
1 GTCGCCTGGTAGC
68399450 GCCTGGTAGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.11, C:0.30, G:0.37, T:0.22
Consensus pattern (14 bp):
GTCGCCTGGTAGCA
Found at i:68410942 original size:24 final size:24
Alignment explanation
Indices: 68410868--68410943 Score: 91
Period size: 24 Copynumber: 3.2 Consensus size: 24
68410858 CCGGTTAGGT
* *
68410868 TCCCAGCGGTGCTCCGGCGATCCA
1 TCCCGGCGGTGCTCCGGCGAGCCA
* **
68410892 T-TCGGCGGTGCTCCGGCGAGCTT
1 TCCCGGCGGTGCTCCGGCGAGCCA
*
68410915 TCCCGGCGGTGCTCCGGTGAGCCA
1 TCCCGGCGGTGCTCCGGCGAGCCA
68410939 TCCCG
1 TCCCG
68410944 AATATAGAAA
Statistics
Matches: 42, Mismatches: 9, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
23 18 0.43
24 24 0.57
ACGTcount: A:0.08, C:0.38, G:0.34, T:0.20
Consensus pattern (24 bp):
TCCCGGCGGTGCTCCGGCGAGCCA
Found at i:68411562 original size:42 final size:43
Alignment explanation
Indices: 68411245--68412169 Score: 940
Period size: 41 Copynumber: 22.4 Consensus size: 43
68411235 GACACCTCGA
* * *
68411245 CACCATCGGCAAACTAGGCTCTTGGT-GTGCAGGAGCCTCGGTG
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG-G
* * ** * * *
68411288 -ACCATCAGC-ACCTTGGTGCTCGAT-GTGCGGGAGCCTTGGG
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGG
* ** ** *
68411328 CACCATCGGC-ACCTTGGTGCAAGGAT-GTGCGAGAGCCTC-GG
1 CACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGG
* * * *
68411369 CACCATTGGCAACCTAGGACCTTGG-CGTAC-GGAGCCTCGAG
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGG
*
68411410 CACCATCGGCAACCTAGGCCCTTGGTCGTACGGGAGCCTCGGG
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGG
* *
68411453 CACCATCGGCAACCTAGGCCCTTGGTC-AGCGAGAGCCTC-GG
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGG
* *
68411494 CACCATC--CGACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGA
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGG
* *
68411535 CACCATC-GCAACCTAGGCCCTTGGTCGTACGGGA-CCTCGGA
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGG
* * * *
68411576 CACCATCGGC-ACCTTGGCGCTTGGAT-GTACGGGAGCCTCGGA
1 CACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGG
* *
68411618 CACCATCGGCAACCTAGGCCCTTGGAT-GTGCGGAAGCCTCGGA
1 CACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGG
*
68411661 CACCATCGGCAACCTAGGCCC-TGGTCGTGCGAGAGCCTC-GG
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGG
*
68411702 CACCATCGG-AACCTAGGCCC-TGGTCGTGCGAGAGCCTC-GG
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGG
*
68411742 CACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGG
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGG
68411785 CACCATC-GCAACCTAGGCCC-TGGTCGTGC----G--TCGGG
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGG
* *
68411820 CA-CATCGGCAACCTAGGCCCCTGGTCGTGCGAGAGCCTC-GG
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGG
*
68411861 CACCATCGGC-ACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGG
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGG
68411903 CACCATCGGCAACCTAGG-CCTCT-GTCGTGCGGGAGCCTCGGG
1 CACCATCGGCAACCTAGGCCCT-TGGTCGTGCGGGAGCCTCGGG
* * *
68411945 CACCATCGGC-ACCTTGTG--CTTGGAT-GTACGGGAGCCTCGGA
1 CACCATCGGCAACCTAG-GCCCTTGG-TCGTGCGGGAGCCTCGGG
68411986 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGG
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGG
*
68412029 CACCATCGGTAACCTAGG-CCTTGGTC-TGCGGGAGCCTCGGG
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGG
* * *
68412070 CACCATCGGC-ACCT-TGCTGCCTCGGAT-GTGCGGGAGCCTCGAG
1 CACCATCGGCAACCTAGGC--CCTTGG-TCGTGCGGGAGCCTCGGG
* * * ** *
68412113 CAGCATTGGC-ACCTTGGTGCTTGGT-GTGCGGGAGCCTC-GA
1 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGG
*
68412153 CACCATAGGC-ACCTAGG
1 CACCATCGGCAACCTAGG
68412170 ACGTTGGATG
Statistics
Matches: 769, Mismatches: 70, Indels: 89
0.83 0.08 0.10
Matches are distributed among these distances:
34 4 0.01
35 20 0.03
36 9 0.01
37 1 0.00
39 18 0.02
40 78 0.10
41 264 0.34
42 208 0.27
43 166 0.22
44 1 0.00
ACGTcount: A:0.17, C:0.34, G:0.32, T:0.17
Consensus pattern (43 bp):
CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGG
Found at i:68411613 original size:208 final size:207
Alignment explanation
Indices: 68411360--68412080 Score: 894
Period size: 208 Copynumber: 3.5 Consensus size: 207
68411350 GGATGTGCGA
* * *
68411360 GAGCCTCGG-CACCATTGGCAACCTAGGACCTTGGCGTACGGAGCCTCGAGCACCATCGGCAACC
1 GAGCCTCGGACACCATCGGCAACCTAGG-CCTTGGTGTACGGAGCCTCGGGCACCATCGGCAACC
* *
68411424 TAGGCCCTTGGTCGTACGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC-AGCGAGAG
65 TAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCC-TGGTCGTGCGAGAG
68411488 CCTCGGCACCATCCGACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATC-GCAACCTAGG
129 CCTCGGCACCATCCGACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG-CACCATCGGCAACCTAGG
68411552 CCCTTGGTCGTACGG
193 CCCTTGGTCGTACGG
* *
68411567 GA-CCTCGGACACCATCGGC-ACCTTGGCGCTTGGATGTACGGGAGCCTCGGACACCATCGGCAA
1 GAGCCTCGGACACCATCGGCAACCTAGGC-CTTGG-TGTAC-GGAGCCTCGGGCACCATCGGCAA
* *
68411630 CCTAGGCCCTTGGAT-GTGCGGAAGCCTCGGACACCATCGGCAACCTAGGCCCTGGTCGTGCGAG
63 CCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTGGTCGTGCGAG
* *
68411694 AGCCTCGGCACCATCGGAACCTAGGCCC-TGGTCGTGCGAGAGCCTCGGCACCATCGGCAACCTA
127 AGCCTCGGCACCATCCG-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGCACCATCGGCAACCTA
* *
68411758 GGCCCCTGGTCGTGCGG
191 GGCCCTTGGTCGTACGG
* * * *
68411775 GAGCCTCGGGCACCATC-GCAACCTAGGCCCT-G-GT-C-GTGCGTCGGGCA-CATCGGCAACCT
1 GAGCCTCGGACACCATCGGCAACCTAGGCCTTGGTGTACGGAGCCTCGGGCACCATCGGCAACCT
* * *
68411834 AGGCCCCTGGTCGTGCGAGAGCCTC-GGCACCATCGGC-ACCTAGGCCCCTGGTCGTGCGGGAGC
66 AGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGG-CCCTGGTCGTGCGAGAGC
*
68411897 CTCGGGCACCATCGGCAACCTAGG-CCTCT-GTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCT
130 CTC-GGCACCATC--CGACCTAGGCCCT-TGGTCGTGCGGGAGCCTC-GGCACCATCGGCAACCT
*
68411959 TGTG--CTTGGAT-GTACGG
190 AG-GCCCTTGG-TCGTACGG
* *
68411976 GAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGTAA
1 GAGCCTCGGACACCATCGGCAACCTAGG-CCTTGGT-GTAC-GGAGCCTCGGGCACCATCGGCAA
68412041 CCTAGG-CCTTGGTC-TGCGGGAGCCTCGGGCACCATCGGCA
63 CCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
68412081 CCTTGCTGCC
Statistics
Matches: 446, Mismatches: 37, Indels: 59
0.82 0.07 0.11
Matches are distributed among these distances:
199 7 0.02
200 32 0.07
201 68 0.15
202 47 0.11
203 17 0.04
204 2 0.00
205 3 0.01
206 19 0.04
207 29 0.07
208 148 0.33
209 60 0.13
210 14 0.03
ACGTcount: A:0.17, C:0.35, G:0.32, T:0.16
Consensus pattern (207 bp):
GAGCCTCGGACACCATCGGCAACCTAGGCCTTGGTGTACGGAGCCTCGGGCACCATCGGCAACCT
AGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTGGTCGTGCGAGAGCC
TCGGCACCATCCGACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGCACCATCGGCAACCTAGGCCC
TTGGTCGTACGG
Found at i:68411976 original size:368 final size:368
Alignment explanation
Indices: 68411239--68412083 Score: 1097
Period size: 368 Copynumber: 2.3 Consensus size: 368
68411229 GCCTCGGACA
* * ** *
68411239 CCTC-GACACCATCGGCAAACTAGGCTCTTGGT-GTGCAGG-AGCCTCGGTGACCATCAGC-ACC
1 CCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGC-GGAAGCCTCGGACACCATCGGCAACC
* ** * * * * * * * **
68411300 TTGGTGCTCGATGTGCGGGAGCCTTGGGCACCATCGGCACCTTGGTGCAAGGAT-GTGCGAGAGC
65 TAGGCCCT-GGTCTGCGAGAGCCTCGGGCACCATCGGAACCTAGG-CCCTGG-TCGTGCGAGAGC
* *
68411364 CTCGGCACCATTGGCAACCTAGGACCTTGGCGTACGGAGCCTCGAGCACCATCGGCAACCTAGGC
127 CTCGGCACCATCGGCAACCTAGGACCCTGGCGTACGGAGCCTCGAGCACCATCGGCAACCTAGGC
*
68411429 CCTTGGTCGTACGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCAGCGAGAGCCTCGG
192 CCTTGGTCGT----G-GCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCAGCGAGAGCCTCGG
*
68411494 CACCATCCGACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGCAACCTAGGCCCTTGG
252 CACCATCCGACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGACACCATCGCAACCTAGGCCCTTGG
68411559 TCGTACGGGACCTCGGACACCATCGGCACCTTGGCGCTTGGATGTACGGGAG
317 TCGTACGGGACCTCGGACACCATCGGCACCTTGGCGCTTGGATGTACGGGAG
68411611 CCTCGGACACCATCGGCAACCTAGGCCCTTGGAT-GTGCGGAAGCCTCGGACACCATCGGCAACC
1 CCTCGGACACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGAAGCCTCGGACACCATCGGCAACC
68411675 TAGGCCCTGGTCGTGCGAGAGCCTC-GGCACCATCGGAACCTAGGCCCTGGTCGTGCGAGAGCCT
65 TAGGCCCTGGTC-TGCGAGAGCCTCGGGCACCATCGGAACCTAGGCCCTGGTCGTGCGAGAGCCT
* * *
68411739 CGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATC-GCAACCTAGGC
129 CGGCACCATCGGCAACCTAGGACCCTGG-CGTAC-GGAGCCTCGAGCACCATCGGCAACCTAGGC
* *
68411803 CC-TGGTCGT-GCGTCGGGCA-CATCGGCAACCTAGGCCCCTGGTCGTGCGAGAGCCTCGGCACC
192 CCTTGGTCGTGGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTC-AGCGAGAGCCTCGGCACC
* *
68411865 ATCGGCACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGG-CCTCT-GT
256 ATCCG-ACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGACACCATC-GCAACCTAGGCCCT-TGGT
* * *
68411928 CGTGCGGGAGCCTCGGGCACCATCGGCACCTT-GTGCTTGGATGTACGGGAG
318 CGTACGGGA-CCTCGGACACCATCGGCACCTTGGCGCTTGGATGTACGGGAG
* * *
68411979 CCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGTAACCT
1 CCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGAAGCCTCGGACACCATCGGCAACCT
* * *
68412044 AGGCCTTGGTCTGCGGGAGCCTCGGGCACCATCGGCACCT
66 AGGCCCTGGTCTGCGAGAGCCTCGGGCACCATCGGAACCT
68412084 TGCTGCCTCG
Statistics
Matches: 421, Mismatches: 37, Indels: 34
0.86 0.08 0.07
Matches are distributed among these distances:
366 23 0.05
367 42 0.10
368 153 0.36
369 32 0.08
372 5 0.01
373 74 0.18
374 57 0.14
375 35 0.08
ACGTcount: A:0.17, C:0.34, G:0.32, T:0.17
Consensus pattern (368 bp):
CCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGAAGCCTCGGACACCATCGGCAACCT
AGGCCCTGGTCTGCGAGAGCCTCGGGCACCATCGGAACCTAGGCCCTGGTCGTGCGAGAGCCTCG
GCACCATCGGCAACCTAGGACCCTGGCGTACGGAGCCTCGAGCACCATCGGCAACCTAGGCCCTT
GGTCGTGGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCAGCGAGAGCCTCGGCACCATCCG
ACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGACACCATCGCAACCTAGGCCCTTGGTCGTACGGG
ACCTCGGACACCATCGGCACCTTGGCGCTTGGATGTACGGGAG
Found at i:68412101 original size:84 final size:85
Alignment explanation
Indices: 68411815--68412169 Score: 380
Period size: 84 Copynumber: 4.3 Consensus size: 85
68411805 TGGTCGTGCG
* *
68411815 TCGGGCA-CATCGGCAACCTAGGCCCCTGGTCGTGCGAGAGCCTC-GGCACCATCGGC-ACCTAG
1 TCGGGCACCATCGGCAACCTAGGCCTC-GGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAG
*
68411877 GCCCCTGGTCGTGCGGGAGCC
65 GCCCTTGGTCGTGCGGGAGCC
* *
68411898 TCGGGCACCATCGGCAACCTAGGCCTCTGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTTGT
1 TCGGGCACCATCGGCAACCTAGGCCTCGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAG-
*
68411962 G--CTTGGAT-GTACGGGAGCC
65 GCCCTTGG-TCGTGCGGGAGCC
* * *
68411981 TCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGTAACCTAG
1 TCGGGCACCATCGGCAACCTAGG-CCTCGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAG
68412046 G-CCTTGGTC-TGCGGGAGCC
65 GCCCTTGGTCGTGCGGGAGCC
* * * *
68412065 TCGGGCACCATCGGC-ACCTTGCTGCCTCGGAT-GTGCGGGAGCCTCGAGCAGCATTGGC-ACCT
1 TCGGGCACCATCGGCAACCTAG--GCCTCGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACCT
* **
68412127 TGGTGCTTGGT-GTGCGGGAGCC
63 AGGCCCTTGGTCGTGCGGGAGCC
* *
68412149 TC-GACACCATAGGC-ACCTAGG
1 TCGGGCACCATCGGCAACCTAGG
68412170 ACGTTGGATG
Statistics
Matches: 235, Mismatches: 24, Indels: 28
0.82 0.08 0.10
Matches are distributed among these distances:
81 1 0.00
83 84 0.36
84 137 0.58
85 13 0.06
ACGTcount: A:0.15, C:0.33, G:0.34, T:0.18
Consensus pattern (85 bp):
TCGGGCACCATCGGCAACCTAGGCCTCGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGG
CCCTTGGTCGTGCGGGAGCC
Found at i:68420176 original size:58 final size:59
Alignment explanation
Indices: 68420085--68420205 Score: 210
Period size: 58 Copynumber: 2.1 Consensus size: 59
68420075 CCCTCCCCAA
68420085 TCCCAAAAGGTAGAATTCAGATACCGTTACATGTTCGGTA-CCCAATAATGAATGAATCG
1 TCCCAAAAGGTAGAATTCAGATACCGTTACATG-TCGGTACCCCAATAATGAATGAATCG
*
68420144 TCCC-AAAGGTAGAATTCAGATACCGTTGCATGTCGGTACCCCAATAATGAATGAATCG
1 TCCCAAAAGGTAGAATTCAGATACCGTTACATGTCGGTACCCCAATAATGAATGAATCG
68420202 TCCC
1 TCCC
68420206 TGTCCCTCCC
Statistics
Matches: 60, Mismatches: 1, Indels: 3
0.94 0.02 0.05
Matches are distributed among these distances:
57 6 0.10
58 50 0.83
59 4 0.07
ACGTcount: A:0.33, C:0.23, G:0.19, T:0.25
Consensus pattern (59 bp):
TCCCAAAAGGTAGAATTCAGATACCGTTACATGTCGGTACCCCAATAATGAATGAATCG
Found at i:68421023 original size:42 final size:42
Alignment explanation
Indices: 68420787--68421594 Score: 803
Period size: 41 Copynumber: 19.5 Consensus size: 42
68420777 CACATTGCTG
* * * * * *
68420787 CTTGGACGTGCTGGAGCCTTGGACGCCATCGGCAACCTATGAC
1 CTTGGTCGTGCGGGAGCCTCGG-CACCATCGGCAACCTAGGCC
* *
68420830 GTTTGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTA-GCC
1 CTTGGTCGTGCGGGAGCCTC-GGCACCATCGGCAACCTAGGCC
**
68420871 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCT-GGTG
1 CTTGGTCGTGCGGGAGCCTC-GGCACCATCGGCAACCTAGGCC
68420912 CTTGGAT-GTGCGGGAGCCTCGGCACCATCGGCAACCTAGGCC
1 CTTGG-TCGTGCGGGAGCCTCGGCACCATCGGCAACCTAGGCC
*
68420954 C-TGGTCGTAC-GGAGCCTCGGCACCATCGGCAACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGCACCATCGGCAACCTAGGCC
68420994 CTTGGTCGTGCGGGAGCCTCGGCACCATC-GCAACCTAGG-C
1 CTTGGTCGTGCGGGAGCCTCGGCACCATCGGCAACCTAGGCC
*
68421034 CTTGGTCGTACGGGAGCCTCGGCACCATCGGC-ACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGCACCATCGGCAACCTAGGCC
* ** *
68421075 C-TGGTCATGTAGGAGCTTCGGCCACCATCGGCAACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGG-CACCATCGGCAACCTAGGCC
* * *
68421117 CTTGGTCGTGCGAGAGCCTCGGGACCATTGGC-ACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGCACCATCGGCAACCTAGGCC
68421158 CTTGGTCGTGCGGGAGCCTCGGCACCATCGGC-ACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGCACCATCGGCAACCTAGGCC
68421199 CTTGGT-GTGC-GGAGCCTCGGCACCATCGGCAACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGCACCATCGGCAACCTAGGCC
*
68421239 CCTGGTCGTGCGGGAGCCTCGGGCACCATCGG-AACCTAGG-C
1 CTTGGTCGTGCGGGAGCCTC-GGCACCATCGGCAACCTAGGCC
* *
68421280 CTTGATCGT--GGGAGACCTCGGGCACCATCGGTAACCTAGG-C
1 CTTGGTCGTGCGGGAG-CCTC-GGCACCATCGGCAACCTAGGCC
* * * * * **
68421321 CTTGATCGTACGAGAACCTCGGGCACCATC-GC-ACCTTGGTG
1 CTTGGTCGTGCGGGAGCCTC-GGCACCATCGGCAACCTAGGCC
* *
68421362 CTTGGAT-GTGCGGGAGCCTCGAACACCATCGGCAACCTCGGCC
1 CTTGG-TCGTGCGGGAGCCTCG-GCACCATCGGCAACCTAGGCC
* *
68421405 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTTGGTGC
1 CTTGGTCGTGCGGGAGCCTC-GGCACCATCGGCAACCTAGG-CC
* * * * **
68421448 C-TGGACGTGCGGGAGCCTCGAGCAGCATTGGC-ACCTTGGTG
1 CTTGGTCGTGCGGGAGCCTCG-GCACCATCGGCAACCTAGGCC
* * * * **
68421489 CTTGGAT-GTGCGGGAGCCTCGAGAAGCATTGGC-ACCTTGGTG
1 CTTGG-TCGTGCGGGAGCCTCG-GCACCATCGGCAACCTAGGCC
*
68421531 CTTGGAT-GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGAC
1 CTTGG-TCGTGCGGGAGCCTCGG-CACCATCGGCAACCTAGGCC
* *
68421574 GTTGGAT-GTGCGGGTGCCTCG
1 CTTGG-TCGTGCGGGAGCCTCG
68421595 AGCAGCAGGG
Statistics
Matches: 666, Mismatches: 65, Indels: 68
0.83 0.08 0.09
Matches are distributed among these distances:
39 25 0.04
40 136 0.20
41 206 0.31
42 182 0.27
43 114 0.17
44 3 0.00
ACGTcount: A:0.15, C:0.32, G:0.34, T:0.19
Consensus pattern (42 bp):
CTTGGTCGTGCGGGAGCCTCGGCACCATCGGCAACCTAGGCC
Found at i:68421624 original size:43 final size:43
Alignment explanation
Indices: 68421337--68421630 Score: 282
Period size: 42 Copynumber: 7.0 Consensus size: 43
68421327 CGTACGAGAA
* *
68421337 CCTCGGGCACCATC-GCACCTTGGT-GCTTGGATGTGCGGGAG
1 CCTCGAGCAGCATCGGCACCTTGGTGGCTTGGATGTGCGGGAG
* * * **
68421378 CCTCGAACACCATCGGCAACCTCGG-CCCTTGG-TCGTGCGGGAG
1 CCTCGAGCAGCATCGGC-ACCTTGGTGGCTTGGAT-GTGCGGGAG
* * * *
68421421 CCTCGGGCACCATCGGCACCTTGGT-GCCTGGACGTGCGGGAG
1 CCTCGAGCAGCATCGGCACCTTGGTGGCTTGGATGTGCGGGAG
*
68421463 CCTCGAGCAGCATTGGCACCTTGGT-GCTTGGATGTGCGGGAG
1 CCTCGAGCAGCATCGGCACCTTGGTGGCTTGGATGTGCGGGAG
* *
68421505 CCTCGAGAAGCATTGGCACCTTGGT-GCTTGGATGTGCGGGAG
1 CCTCGAGCAGCATCGGCACCTTGGTGGCTTGGATGTGCGGGAG
* * ** *
68421547 CCTCG-GACACCATCGGCAACCTAGGACG-TTGGATGTGCGGGTG
1 CCTCGAG-CAGCATCGGC-ACCTTGGTGGCTTGGATGTGCGGGAG
** * *
68421590 CCTCGAGCAGCAGGGGCACCCTGGTGGCTCGGATGTGCGGG
1 CCTCGAGCAGCATCGGCACCTTGGTGGCTTGGATGTGCGGG
68421631 CTAAAGAAAA
Statistics
Matches: 212, Mismatches: 30, Indels: 20
0.81 0.11 0.08
Matches are distributed among these distances:
41 13 0.06
42 118 0.56
43 79 0.37
44 2 0.01
ACGTcount: A:0.15, C:0.29, G:0.37, T:0.19
Consensus pattern (43 bp):
CCTCGAGCAGCATCGGCACCTTGGTGGCTTGGATGTGCGGGAG
Found at i:68428741 original size:5 final size:5
Alignment explanation
Indices: 68428734--68428769 Score: 54
Period size: 5 Copynumber: 7.2 Consensus size: 5
68428724 TTTTCTACCG
* *
68428734 TGCCG TGCCG TGCCA TGCCA TGCCA TGCCA TGCCA T
1 TGCCA TGCCA TGCCA TGCCA TGCCA TGCCA TGCCA T
68428770 ACTTCTTGTT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
5 30 1.00
ACGTcount: A:0.14, C:0.39, G:0.25, T:0.22
Consensus pattern (5 bp):
TGCCA
Found at i:68429515 original size:58 final size:59
Alignment explanation
Indices: 68429424--68429544 Score: 181
Period size: 58 Copynumber: 2.1 Consensus size: 59
68429414 CCCTCCCTAA
* * * *
68429424 TCCCAAAAGGTAGAATTCAGATACCGTTACATGTTCGGTACCCAATAATGAATGAATTG
1 TCCCAAAAGGTAGAATTCAGATACCGTTACATGTCCGGTACCCAACAATGAAGGAATCG
* *
68429483 TCCC-AAAGGTAGGATTCAGATACCGTTGCATGTCCGGTACCCAACAATGAAGGAATCG
1 TCCCAAAAGGTAGAATTCAGATACCGTTACATGTCCGGTACCCAACAATGAAGGAATCG
68429541 TCCC
1 TCCC
68429545 TGTCCCTCCC
Statistics
Matches: 56, Mismatches: 6, Indels: 1
0.89 0.10 0.02
Matches are distributed among these distances:
58 52 0.93
59 4 0.07
ACGTcount: A:0.32, C:0.23, G:0.21, T:0.24
Consensus pattern (59 bp):
TCCCAAAAGGTAGAATTCAGATACCGTTACATGTCCGGTACCCAACAATGAAGGAATCG
Found at i:68429972 original size:24 final size:24
Alignment explanation
Indices: 68429940--68429991 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
68429930 CCGGTTAGGT
*
68429940 TCCCGGCGGTGCTCCGATGAGCCA
1 TCCCGGCGGTGCTCCGACGAGCCA
* *
68429964 TCCCGGCGGTGCTCTGGCGAGCCA
1 TCCCGGCGGTGCTCCGACGAGCCA
68429988 TCCC
1 TCCC
68429992 AGAATATCGA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.10, C:0.40, G:0.33, T:0.17
Consensus pattern (24 bp):
TCCCGGCGGTGCTCCGACGAGCCA
Found at i:68434949 original size:10 final size:10
Alignment explanation
Indices: 68434934--68434967 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
68434924 TTCAATTTTC
*
68434934 TGCCGTGCCG
1 TGCCGTGCCA
68434944 TGCCGTGCCA
1 TGCCGTGCCA
*
68434954 TGCCATGCCA
1 TGCCGTGCCA
68434964 TGCC
1 TGCC
68434968 ATACTTCTTG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
10 22 1.00
ACGTcount: A:0.09, C:0.41, G:0.29, T:0.21
Consensus pattern (10 bp):
TGCCGTGCCA
Found at i:68435708 original size:58 final size:59
Alignment explanation
Indices: 68435630--68435750 Score: 172
Period size: 58 Copynumber: 2.1 Consensus size: 59
68435620 CCCTCCCCAA
* * * *
68435630 TCCCAAAAGGTAGAATTCGGATACTGTTACATGTTCGATACCCAATAATGAATGAATCG
1 TCCCAAAAGGTAGAATTCGGATACCGTTACAGGTCCGATACCCAAAAATGAATGAATCG
* * *
68435689 TCCC-AAAGGTAGGATTCGGATACCGTTGCAGGTCCGGTACCCAAAAATGAATGAATCG
1 TCCCAAAAGGTAGAATTCGGATACCGTTACAGGTCCGATACCCAAAAATGAATGAATCG
68435747 TCCC
1 TCCC
68435751 TGTCCCTCCC
Statistics
Matches: 55, Mismatches: 7, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
58 51 0.93
59 4 0.07
ACGTcount: A:0.32, C:0.22, G:0.21, T:0.24
Consensus pattern (59 bp):
TCCCAAAAGGTAGAATTCGGATACCGTTACAGGTCCGATACCCAAAAATGAATGAATCG
Found at i:68436174 original size:24 final size:24
Alignment explanation
Indices: 68436146--68436196 Score: 93
Period size: 24 Copynumber: 2.1 Consensus size: 24
68436136 CCGGTTAGGT
68436146 TCCCGGCAGTGCTCCGGTGAGCCA
1 TCCCGGCAGTGCTCCGGTGAGCCA
*
68436170 TCCCGGCGGTGCTCCGGTGAGCCA
1 TCCCGGCAGTGCTCCGGTGAGCCA
68436194 TCC
1 TCC
68436197 TGGAATATCG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.10, C:0.39, G:0.33, T:0.18
Consensus pattern (24 bp):
TCCCGGCAGTGCTCCGGTGAGCCA
Found at i:68436461 original size:43 final size:43
Alignment explanation
Indices: 68436410--68437430 Score: 895
Period size: 42 Copynumber: 23.9 Consensus size: 43
68436400 GCCTTGAACG
* * * *
68436410 CCATCGGCAACCTAGGACGTTTGTTGTGCGGGAGCCTCGGGCA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * ** * *
68436453 CCACCGGC-ACCTTGGTGCTTGGAT-GTGCGAGAGCCTCAGGCA
1 CCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCA
* * * **
68436495 CCATTGGCAACCTAGGACCC-TGGTCGCGCGGGAGTCTC-GATA
1 CCATCGGCAACCTAGG-CCCTTGGTCGTGCGGGAGCCTCGGGCA
68436537 CCATCGGCAACCTAGGCCCTTGGTGCTTGGATGTGCGGGAGCCTCGGGCA
1 CCATCGGCAACCTAGGCCCTTGGT-C------GTGCGGGAGCCTCGGGCA
* * *
68436587 CCATCGGCATCCTAGGCCGTTGGTCGTGCGAGAGCCTCGGGCA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * *
68436630 CCATCGG-AACCTAGGCCCCTAGTCGTGCGGGAGCCTCGGCCA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * * * *
68436672 CCATCGGCAACCTAGGCGCTTAGTTGTGCAGGAGCCTCGGCCA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * * ** * *
68436715 CCATCAGC-ACCTAGGCCCCTGGTCATGTAGGAGCTTCGGCCA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
*
68436757 CCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* *
68436800 CCATCGAC-ACCTAGGCCCTTGGTCGTACGGGAGCCTCGGGCA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * * * *
68436842 CCATCGGC-ACCTTGGTGCTTTGAT-GTGCGGGAGCCTTGGGCA
1 CCATCGGCAACCTAGG-CCCTTGGTCGTGCGGGAGCCTCGGGCA
* *
68436884 CTATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * *
68436927 CCATCGGCAACCTAAGCCCTTGGTCGTGCGAGAGCCTCGAG-A
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * *
68436969 CCATTGGC-ACCTAGGCCCTTGGTCGTGCGGGTGCCTCGGCCA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
68437011 CCATCGGC-ACCTAGGCCCTTGGAT-GTGCGGGAGCCTCGGGCA
1 CCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCA
* *
68437053 ACATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * * * *
68437096 CCATCGGTAACCTAGG-CCTTGATCGTGCGAGAACCTCAGGCA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * * *
68437138 CCATCGGCAACCTAGG-CCTTGATCGTACGAGAACCTCGGGCA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * ***
68437180 CCATCGAC-ACCTTAGTG--CTTGGAT-GTGCAGGAGCCTCAAACA
1 CCATCGGCAACC-TAG-GCCCTTGG-TCGTGCGGGAGCCTCGGGCA
** *
68437222 CTGTCGGCAACCTCGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * * * *
68437265 CCATCGGC-ACCTTGGTGCCATGGACGTGCGGGAGCCTCGAGCA
1 CCATCGGCAACCTAGG-CCCTTGGTCGTGCGGGAGCCTCGGGCA
* * * ** * * *
68437308 GCATTGGC-ACCTTGGTGCTTGGAT-GTGCGAGAGCCTCGAGAA
1 CCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCA
* * * ** *
68437350 GCATTGGC-ACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGGACA
1 CCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCA
* * *
68437392 CCATCGGCAACCTAGGACGTTGGAT-GTGCGGGTGCCTCG
1 CCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCG
68437431 AGCAGCAGGG
Statistics
Matches: 808, Mismatches: 138, Indels: 64
0.80 0.14 0.06
Matches are distributed among these distances:
41 34 0.04
42 412 0.51
43 325 0.40
44 1 0.00
49 12 0.01
50 24 0.03
ACGTcount: A:0.17, C:0.32, G:0.33, T:0.19
Consensus pattern (43 bp):
CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
Found at i:68436717 original size:85 final size:86
Alignment explanation
Indices: 68436569--68437407 Score: 795
Period size: 85 Copynumber: 9.9 Consensus size: 86
68436559 GTGCTTGGAT
* *
68436569 GTGCGGGAGCCTCGGGCACCATCGGCATCCTAGGCCGTTGGTCGTGCGAGAGCCTCGGGCACCAT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCAT
*
68436634 CGG-AACCTAGGCCCCTAGTC
66 CGGCAACCTAGGCCCCTGGTC
* * * * *
68436654 GTGCGGGAGCCTCGGCCACCATCGGCAACCTAGGCGCTTAGTTGTGC-AGGAGCCTCGGCCACCA
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGA-GAGCCTCGGGCACCA
*
68436718 TCAGC-ACCTAGGCCCCTGGTC
65 TCGGCAACCTAGGCCCCTGGTC
* ** * *
68436739 ATGTAGGAGCTTCGGCCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCAT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCAT
* *
68436804 CGAC-ACCTAGGCCCTTGGTC
66 CGGCAACCTAGGCCCCTGGTC
* * * * * * * *
68436824 GTACGGGAGCCTCGGGCACCATCGGC-ACCTTGGTGCTTTGAT-GTGCGGGAGCCTTGGGCACTA
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGG-CCCTTGGTCGTGCGAGAGCCTCGGGCACCA
68436887 TCGGCAACCTAGGCCCCTGGTC
65 TCGGCAACCTAGGCCCCTGGTC
* *
68436909 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAAGCCCTTGGTCGTGCGAGAGCCTCGAG-ACCAT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCAT
* *
68436973 TGGC-ACCTAGGCCCTTGGTC
66 CGGCAACCTAGGCCCCTGGTC
* * * *
68436993 GTGCGGGTGCCTCGGCCACCATCGGC-ACCTAGGCCCTTGGAT-GTGCGGGAGCCTCGGGCAACA
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGAGAGCCTCGGGCACCA
68437056 TCGGCAACCTAGGCCCCTGGTC
65 TCGGCAACCTAGGCCCCTGGTC
* * * *
68437078 GTGCGGGAGCCTCGGGCACCATCGGTAACCTAGG-CCTTGATCGTGCGAGAACCTCAGGCACCAT
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCAT
* *
68437142 CGGCAACCTAGG-CCTTGATC
66 CGGCAACCTAGGCCCCTGGTC
* * * * ***
68437162 GTACGAGAACCTCGGGCACCATCGAC-ACCTTAGTG--CTTGGAT-GTGC-AGGAGCCTCAAACA
1 GTGCGGGAGCCTCGGGCACCATCGGCAACC-TAG-GCCCTTGG-TCGTGCGA-GAGCCTCGGGCA
** * *
68437222 CTGTCGGCAACCTCGGCCCTTGGTC
62 CCATCGGCAACCTAGGCCCCTGGTC
* * * * * * *
68437247 GTGCGGGAGCCTCGGGCACCATCGGC-ACCTTGGTGCCATGGACGTGCGGGAGCCTCGAGCAGCA
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGG-CCCTTGGTCGTGCGAGAGCCTCGGGCACCA
* * ** *
68437311 TTGGC-ACCTTGGTGCTTGGAT-
65 TCGGCAACCTAGGCCCCTGG-TC
* * * * * * ** * *
68437332 GTGCGAGAGCCTCGAGAAGCATTGGC-ACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGGACACCA
1 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGAGAGCCTCGGGCACCA
68437395 TCGGCAACCTAGG
65 TCGGCAACCTAGG
68437408 ACGTTGGATG
Statistics
Matches: 620, Mismatches: 109, Indels: 50
0.80 0.14 0.06
Matches are distributed among these distances:
83 32 0.05
84 165 0.27
85 374 0.60
86 49 0.08
ACGTcount: A:0.17, C:0.32, G:0.32, T:0.18
Consensus pattern (86 bp):
GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCAT
CGGCAACCTAGGCCCCTGGTC
Found at i:68436844 original size:127 final size:127
Alignment explanation
Indices: 68436410--68437430 Score: 853
Period size: 127 Copynumber: 8.0 Consensus size: 127
68436400 GCCTTGAACG
* * * * * * **
68436410 CCATCGGCAACCTAGGACGTTTGTTGTGCGGGAGCCTCGGGCACCACCGGCACCTTGGTGCTTGG
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGG
* * * **
68436475 AT-GTGCGAGAGCCTCAGG-CACCATTGGCAACCTAGGACCC-TGGTCGCGCGGGAGTCTC-GAT
66 -TCGTGCG-GAGCCTC-GGCCACCATCGGCAACCTAGG-CCCTTGGTCGTGCGGGAGCCTCGGGC
68436536 A
127 A
68436537 CCATCGGCAACCTAGGCCCTTGGTGCTTGGATGTGCGGGAGCCTCGGGCACCATCGGCATCCTAG
1 CCATCGGCAACCTAGGCCCTTGGT-C------GTGCGGGAGCCTCGGGCACCATCGGCA-CCTAG
* * * *
68436602 GCCGTTGGTCGTGCGAGAGCCTCGGGCACCATCGG-AACCTAGGCCCCTAGTCGTGCGGGAGCCT
58 GCCCTTGGTCGTGCG-GAGCCTCGGCCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCT
*
68436666 CGGCCA
122 CGGGCA
* * * * * * *
68436672 CCATCGGCAACCTAGGCGCTTAGTTGTGCAGGAGCCTCGGCCACCATCAGCACCTAGGCCCCTGG
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGG
* * * *
68436737 TCATGTAGGAGCTTCGGCCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCA
66 TCGTG-CGGAGCCTCGGCCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * * * *
68436800 CCATCGAC-ACCTAGGCCCTTGGTCGTACGGGAGCCTCGGGCACCATCGGCACCTTGGTGCTTTG
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGG-CCCTTG
* * * * *
68436864 AT-GTGCGGGAGCCTTGGGCACTATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCA
65 GTCGTGC-GGAGCCTCGGCCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * * *
68436927 CCATCGGCAACCTAAGCCCTTGGTCGTGCGAGAGCCTCGAG-ACCATTGGCACCTAGGCCCTTGG
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGG
*
68436991 TCGTGCGGGTGCCTCGGCCACCATCGGC-ACCTAGGCCCTTGGAT-GTGCGGGAGCCTCGGGCA
66 TCGTGC-GGAGCCTCGGCCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCA
* * *
68437053 ACATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGTAACCTAGG-CCTTG
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGG-CACCTAGGCCCTTG
* * * * * *
68437117 ATCGTGCGAGAACCTCAGG-CACCATCGGCAACCTAGG-CCTTGATCGTACGAGAACCTCGGGCA
65 GTCGTGCG-GAGCCTC-GGCCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * *** ** *
68437180 CCATCGAC-ACCTTAGTG--CTTGGAT-GTGCAGGAGCCTCAAACACTGTCGGCAACCTCGGCCC
1 CCATCGGCAACC-TAG-GCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCC
* * * * * *
68437241 TTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTTGGTGCCATGGACGTGCGGGAGCCTCGA
62 TTGGTCGTGC-GGAGCCTCGGCCACCATCGGCAACCTAGG-CCCTTGGTCGTGCGGGAGCCTCGG
68437305 GCA
125 GCA
* * * ** * * * * * * **
68437308 GCATTGGC-ACCTTGGTGCTTGGAT-GTGCGAGAGCCTCGAGAAGCATTGGCACCTTGGTGCTTG
1 CCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTG
* * * *
68437371 GAT-GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGACGTTGGAT-GTGCGGGTGCCTCG
65 G-TCGTGC-GGAGCCTCGGCCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCG
68437431 AGCAGCAGGG
Statistics
Matches: 730, Mismatches: 125, Indels: 78
0.78 0.13 0.08
Matches are distributed among these distances:
126 115 0.16
127 335 0.46
128 171 0.23
133 3 0.00
134 52 0.07
135 54 0.07
ACGTcount: A:0.17, C:0.32, G:0.33, T:0.19
Consensus pattern (127 bp):
CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGG
TCGTGCGGAGCCTCGGCCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
Found at i:68437130 original size:23 final size:23
Alignment explanation
Indices: 68437104--68437173 Score: 62
Period size: 23 Copynumber: 3.2 Consensus size: 23
68437094 CACCATCGGT
68437104 AACCTAGGCCTTGATCGTGCGAG
1 AACCTAGGCCTTGATCGTGCGAG
*
68437127 AACCTCAGGCAC--CATCG-GC---
1 AACCT-AGGC-CTTGATCGTGCGAG
*
68437146 AACCTAGGCCTTGATCGTACGAG
1 AACCTAGGCCTTGATCGTGCGAG
68437169 AACCT
1 AACCT
68437174 CGGGCACCAT
Statistics
Matches: 36, Mismatches: 3, Indels: 16
0.65 0.05 0.29
Matches are distributed among these distances:
17 1 0.03
18 4 0.11
19 9 0.25
20 1 0.03
22 2 0.06
23 14 0.39
24 4 0.11
25 1 0.03
ACGTcount: A:0.26, C:0.31, G:0.24, T:0.19
Consensus pattern (23 bp):
AACCTAGGCCTTGATCGTGCGAG
Found at i:68437397 original size:212 final size:211
Alignment explanation
Indices: 68436554--68437307 Score: 506
Period size: 212 Copynumber: 3.6 Consensus size: 211
68436544 CAACCTAGGC
* * *** ** * *
68436554 CCTTGGTGCTTGGATGTGCGGGAGCCTCGGGCACCATCGGCATCCTAGGCCGTTGG-TCGTGCGA
1 CCTTAGTGCTTGGATGTGCAGGAGCCTCAAACACTGTCGGCA-CCTAGGCCCTTGGAT-GTGCGG
* * * * *
68436618 GAGCCTCGGGCACCATCGG-AACCTAGGCCCCTAGTCGTGCGGGAGCCTCG-GCCACCATCGGCA
64 GAGCCTCGGGCAACATCGGCAACCTAGGCCCATGGACGTGCGGGAGCCTCGAG-CACCATCGGTA
* * * * * *
68436681 ACCTAGGCGCTT-AGTTGTGC-AGGAGCCTC-GGCCACCATCAGC-ACCTAGGCCCCTGGTCATG
128 ACCTAGGC-CTTGA-TCGTGCGA-GAACCTCAGG-AACCATCGGCAACCTAGG-CCTTGATC--G
* * * *
68436742 TA-G-GAGCTTCGGCCACCATCGGCAA
186 TACGAGAACCTCGGACACCATCGAC-A
*** ** * *
68436767 CC-TAG-GCCCTTGG-TCGTGC-GAGAGCCTCGGGCACCATCGACACCTAGGCCCTTGG-TCGTA
1 CCTTAGTG--CTTGGAT-GTGCAG-GAGCCTCAAACACTGTCGGCACCTAGGCCCTTGGAT-GTG
* * ** * * * * * *
68436827 CGGGAGCCTCGGGCACCATCGGC-ACCTTGGTGCTTTGATGTGCGGGAGCCTTGGGCACTATCGG
61 CGGGAGCCTCGGGCAACATCGGCAACCTAGGCCCATGGACGTGCGGGAGCCTCGAGCACCATCGG
* * * * * * * * * *
68436891 CAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAAGCCCTTGGTCGTGC
126 TAACCTAGG-CCTTGATCGTGCGAGAACCTCAGGAACCATCGGCAACCT-AGGCCTTGATCGTAC
* * * *
68436956 GAGAGCCTC-GAGACCATTGGCA
189 GAGAACCTCGGACACCATCGACA
* * *** **
68436978 CC-TAG-GCCCTTGG-TCGTGCGGGTGCCTCGGCCACCATCGGCACCTAGGCCCTTGGATGTGCG
1 CCTTAGTG--CTTGGAT-GTGCAGGAGCCTCAAACACTGTCGGCACCTAGGCCCTTGGATGTGCG
* * *
68437040 GGAGCCTCGGGCAACATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGTA
63 GGAGCCTCGGGCAACATCGGCAACCTAGGCCCATGGACGTGCGGGAGCCTCGAGCACCATCGGTA
*
68437105 ACCTAGGCCTTGATCGTGCGAGAACCTCAGGCACCATCGGCAACCTAGGCCTTGATCGTACGAGA
128 ACCTAGGCCTTGATCGTGCGAGAACCTCAGGAACCATCGGCAACCTAGGCCTTGATCGTACGAGA
*
68437170 ACCTCGGGCACCATCGACA
193 ACCTCGGACACCATCGACA
*
68437189 CCTTAGTGCTTGGATGTGCAGGAGCCTCAAACACTGTCGGCAACCTCGGCCCTTGG-TCGTGCGG
1 CCTTAGTGCTTGGATGTGCAGGAGCCTCAAACACTGTCGGC-ACCTAGGCCCTTGGAT-GTGCGG
* * *
68437253 GAGCCTCGGGCACCATCGGC-ACCTTGGTGCCATGGACGTGCGGGAGCCTCGAGCA
64 GAGCCTCGGGCAACATCGGCAACCTAGG-CCCATGGACGTGCGGGAGCCTCGAGCA
68437308 GCATTGGCAC
Statistics
Matches: 449, Mismatches: 68, Indels: 49
0.79 0.12 0.09
Matches are distributed among these distances:
210 20 0.04
211 154 0.34
212 220 0.49
213 53 0.12
214 2 0.00
ACGTcount: A:0.17, C:0.33, G:0.32, T:0.18
Consensus pattern (211 bp):
CCTTAGTGCTTGGATGTGCAGGAGCCTCAAACACTGTCGGCACCTAGGCCCTTGGATGTGCGGGA
GCCTCGGGCAACATCGGCAACCTAGGCCCATGGACGTGCGGGAGCCTCGAGCACCATCGGTAACC
TAGGCCTTGATCGTGCGAGAACCTCAGGAACCATCGGCAACCTAGGCCTTGATCGTACGAGAACC
TCGGACACCATCGACA
Found at i:68437460 original size:43 final size:42
Alignment explanation
Indices: 68437247--68437466 Score: 219
Period size: 43 Copynumber: 5.2 Consensus size: 42
68437237 GCCCTTGGTC
* * * * * *
68437247 GTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGCCATGGAC
1 GTGCGGGAGCCTCGAGCAGCATTGGCACCCTGGTG-CTTGGAT
*
68437290 GTGCGGGAGCCTCGAGCAGCATTGGCACCTTGGTGCTTGGAT
1 GTGCGGGAGCCTCGAGCAGCATTGGCACCCTGGTGCTTGGAT
* * *
68437332 GTGCGAGAGCCTCGAGAAGCATTGGCACCTTGGTGCTTGGAT
1 GTGCGGGAGCCTCGAGCAGCATTGGCACCCTGGTGCTTGGAT
* * * *
68437374 GTGCGGGAGCCTCG-GACACCATCGGCAACCTAGG-ACGTTGGAT
1 GTGCGGGAGCCTCGAG-CAGCATTGGCACCCT-GGTGC-TTGGAT
* ** *
68437417 GTGCGGGTGCCTCGAGCAGCAGGGGCACCCTGGTGGCTCGGAT
1 GTGCGGGAGCCTCGAGCAGCATTGGCACCCTGGT-GCTTGGAT
68437460 GTGCGGG
1 GTGCGGG
68437467 CTAAAGAAAA
Statistics
Matches: 150, Mismatches: 21, Indels: 12
0.82 0.11 0.07
Matches are distributed among these distances:
41 1 0.01
42 71 0.47
43 76 0.51
44 2 0.01
ACGTcount: A:0.15, C:0.26, G:0.39, T:0.19
Consensus pattern (42 bp):
GTGCGGGAGCCTCGAGCAGCATTGGCACCCTGGTGCTTGGAT
Found at i:68440116 original size:58 final size:59
Alignment explanation
Indices: 68440025--68440145 Score: 190
Period size: 58 Copynumber: 2.1 Consensus size: 59
68440015 CCCTCCCCTA
* * *
68440025 TCCCAAAAGGTAGAATTCGGATACCGTTACATGTTCGGTACCCAATAATGAATGAATTG
1 TCCCAAAAGGTAGAATTCGGATACCGTTACATGTCCGGTACCCAACAATGAATGAATCG
* *
68440084 TCCC-AAAGGTAGGATTCGGATACCGTTGCATGTCCGGTACCCAACAATGAATGAATCG
1 TCCCAAAAGGTAGAATTCGGATACCGTTACATGTCCGGTACCCAACAATGAATGAATCG
68440142 TCCC
1 TCCC
68440146 TGTCCCTCCC
Statistics
Matches: 57, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
58 53 0.93
59 4 0.07
ACGTcount: A:0.31, C:0.23, G:0.21, T:0.25
Consensus pattern (59 bp):
TCCCAAAAGGTAGAATTCGGATACCGTTACATGTCCGGTACCCAACAATGAATGAATCG
Found at i:68440862 original size:42 final size:43
Alignment explanation
Indices: 68440782--68441540 Score: 705
Period size: 42 Copynumber: 17.9 Consensus size: 43
68440772 GCATTGGACG
* * * *
68440782 CCATCGGCAACCTAGGACGTTTG-TCGTGCGGGAACCTCGGGCA
1 CCATCGGC-ACCTAGGCCCTTGGATCGTGCGGGAGCCTCGGGCA
* * **
68440825 CCACCGGCACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGGGCA
1 CCATCGGCACCTAGGCCCTTGGATCGTGCGGGAGCCTCGGGCA
* *
68440867 CCATCGGCATCCTAGGCCGTTGG-TCGTGCGAGAGCCTCGGGCA
1 CCATCGGCA-CCTAGGCCCTTGGATCGTGCGGGAGCCTCGGGCA
* * *
68440910 CCATCGGAACCTAGGCCCCTGG-TCGTGCGGGAGCCTCGGCCA
1 CCATCGGCACCTAGGCCCTTGGATCGTGCGGGAGCCTCGGGCA
*
68440952 CCATCGGCAACCTAGGCGCTTGG-TCGTGCGGGAGCCTCGGGCA
1 CCATCGGC-ACCTAGGCCCTTGGATCGTGCGGGAGCCTCGGGCA
* * ** *
68440995 CCATCGGCACTTTGGTGCTTGGAT-GTGCGGGAGCCTTGGGCA
1 CCATCGGCACCTAGGCCCTTGGATCGTGCGGGAGCCTCGGGCA
* * *
68441037 CCATCAGTAGCCTAGGCCCCTGG-TCGTGCGGGAGCCTCGGGCA
1 CCATCGGCA-CCTAGGCCCTTGGATCGTGCGGGAGCCTCGGGCA
* * * *
68441080 CCGTCGGTAACCTAGGCCCTTAG-TCGTGCGAGAGCCTCGGG-A
1 CCATCGG-CACCTAGGCCCTTGGATCGTGCGGGAGCCTCGGGCA
* * *
68441122 CCATTGGCACCTAGGCCCTTGG-TCGTGCAGGAGCCTCGGCCA
1 CCATCGGCACCTAGGCCCTTGGATCGTGCGGGAGCCTCGGGCA
* *
68441164 CCATCGGCACCGAGGCCCTTGGAT-GTACGGGAGCCTCGGGCA
1 CCATCGGCACCTAGGCCCTTGGATCGTGCGGGAGCCTCGGGCA
* *
68441206 CCATCGGCAACCAAGGCCCCTGG-TCGTGCGGGAGCCTCGGGCA
1 CCATCGGC-ACCTAGGCCCTTGGATCGTGCGGGAGCCTCGGGCA
* * * *
68441249 CCATCGGTAACCTAGG-CCTT-GATCGTACGAGAACCTCGGGCA
1 CCATCGG-CACCTAGGCCCTTGGATCGTGCGGGAGCCTCGGGCA
* * * *
68441291 CCATCGGTAACCTAGG-CCTT-GATCGTGAGAGAACCTCGGGCA
1 CCATCGG-CACCTAGGCCCTTGGATCGTGCGGGAGCCTCGGGCA
* ** **
68441333 CCATCGGCACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGAACA
1 CCATCGGCACCTAGGCCCTTGGATCGTGCGGGAGCCTCGGGCA
*
68441375 CCATCGGCAACCTCGGCCCTTGG-TCGTGCGGGAGCCTCGGGCA
1 CCATCGGC-ACCTAGGCCCTTGGATCGTGCGGGAGCCTCGGGCA
** ** * * * *
68441418 CCATCGGCACCTTTGTGCTTGGAT-GTACGGAAGCCTCGAGAA
1 CCATCGGCACCTAGGCCCTTGGATCGTGCGGGAGCCTCGGGCA
* * * ** *
68441460 GCATTGGCACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGGACA
1 CCATCGGCACCTAGGCCCTTGGATCGTGCGGGAGCCTCGGGCA
* * *
68441502 CCATCGGCAACCTAGGACGTTGGAT-GTGCGGGTGCCTCG
1 CCATCGGC-ACCTAGGCCCTTGGATCGTGCGGGAGCCTCG
68441541 AGCAGCAGGG
Statistics
Matches: 597, Mismatches: 99, Indels: 40
0.81 0.13 0.05
Matches are distributed among these distances:
41 35 0.06
42 314 0.53
43 247 0.41
44 1 0.00
ACGTcount: A:0.16, C:0.31, G:0.34, T:0.19
Consensus pattern (43 bp):
CCATCGGCACCTAGGCCCTTGGATCGTGCGGGAGCCTCGGGCA
Found at i:68440893 original size:85 final size:85
Alignment explanation
Indices: 68440741--68441540 Score: 792
Period size: 85 Copynumber: 9.4 Consensus size: 85
68440731 GGTGCGGGAG
* * * * * * * * * * *
68440741 CATCGGCACATTGCTGCTTGGACGTACGGGAGCATTGGACGCCATCGGCAACCTAGGACGTTTGT
1 CATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGT
*
68440806 CGTGCGGGAACCTCGGGCAC
66 CGTGCGGGAGCCTCGGGCAC
* * *
68440826 CACCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGGGCACCATCGGCATCCTAGGCCGTTGGT
1 CATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGT
*
68440891 CGTGCGAGAGCCTCGGGCAC
66 CGTGCGGGAGCCTCGGGCAC
* * ** * * *
68440911 CATCGGAACCTAGGCCCCTGG-TCGTGCGGGAGCCTCGGCCACCATCGGCAACCTAGGCGCTTGG
1 CATCGGCACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG
68440975 TCGTGCGGGAGCCTCGGGCAC
65 TCGTGCGGGAGCCTCGGGCAC
* * * * * *
68440996 CATCGGCACTTTGGTGCTTGGATGTGCGGGAGCCTTGGGCACCATCAGTAGCCTAGGCCCCTGGT
1 CATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGT
68441061 CGTGCGGGAGCCTCGGGCAC
66 CGTGCGGGAGCCTCGGGCAC
* * * ** * * *
68441081 CGTCGGTAACCTAGGCCCTTAG-TCGTGCGAGAGCCTCGGG-ACCATTGGC-ACCTAGGCCCTTG
1 CATCGG-CACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTG
* *
68441143 GTCGTGCAGGAGCCTCGGCCAC
64 GTCGTGCGGGAGCCTCGGGCAC
** ** * * *
68441165 CATCGGCACCGAGGCCCTTGGATGTACGGGAGCCTCGGGCACCATCGGCAACCAAGGCCCCTGGT
1 CATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGT
68441230 CGTGCGGGAGCCTCGGGCAC
66 CGTGCGGGAGCCTCGGGCAC
* * * * * * *
68441250 CATCGGTAACCTAGG-CCTT-GATCGTACGAGAACCTCGGGCACCATCGGTAACCTAGG-CCTTG
1 CATCGG-CACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTG
* * * *
68441312 ATCGTGAGAGAACCTCGGGCAC
64 GTCGTGCGGGAGCCTCGGGCAC
** *
68441334 CATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGAACACCATCGGCAACCTCGGCCCTTGGT
1 CATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGT
68441399 CGTGCGGGAGCCTCGGGCAC
66 CGTGCGGGAGCCTCGGGCAC
* * * * * * * * **
68441419 CATCGGCACCTTTGTGCTTGGATGTACGGAAGCCTCGAGAAGCATTGGC-ACCTTGGTGCTTGGA
1 CATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-
*
68441483 T-GTGCGGGAGCCTCGGACAC
65 TCGTGCGGGAGCCTCGGGCAC
* * *
68441503 CATCGGCAACCTAGG-ACGTTGGATGTGCGGGTGCCTCG
1 CATCGGC-ACCTTGGTGC-TTGGATGTGCGGGAGCCTCG
68441541 AGCAGCAGGG
Statistics
Matches: 593, Mismatches: 107, Indels: 30
0.81 0.15 0.04
Matches are distributed among these distances:
83 32 0.05
84 144 0.24
85 387 0.65
86 30 0.05
ACGTcount: A:0.16, C:0.31, G:0.34, T:0.19
Consensus pattern (85 bp):
CATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGT
CGTGCGGGAGCCTCGGGCAC
Found at i:68441506 original size:169 final size:169
Alignment explanation
Indices: 68440782--68441540 Score: 843
Period size: 169 Copynumber: 4.5 Consensus size: 169
68440772 GCATTGGACG
* * * * *
68440782 CCATCGGCAACCTAGGACGTTTGTCGTGCGGGAACCTCGGGCACCACCGGCACCTTGGTGCTTGG
1 CCATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGCTTGG
* ** *
68440847 ATGTGCGGGAGCCTCGGGCACCATCGGCATCCTAGGCCGTTGGTCGTGCGAGAGCCTCGGGCACC
65 ATGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACC
* * *
68440912 ATCGG-AACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGCCA
130 ATCGGTAACCTAGGCCCTTGGTCGTACGGAAGCCTCGG-CA
* *
68440952 CCATCGGCAACCTAGGCGCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACTTTGGTGCTTGG
1 CCATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGCTTGG
* * * *
68441017 ATGTGCGGGAGCCTTGGGCACCATCAGTAGCCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACC
65 ATGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACC
* * * *
68441082 GTCGGTAACCTAGGCCCTTAGTCGTGC-GAGAGCCTCGGGA
130 ATCGGTAACCTAGGCCCTTGGTCGTACGGA-AGCCTCGGCA
* * * ** **
68441122 CCATTGGCACCTAGGCCCTTGGTCGTGCAGGAGCCTCGGCCACCATCGGCACCGAGGCCCTTGGA
1 CCATCGGCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGCTTGGA
* *
68441187 TGTACGGGAGCCTCGGGCACCATCGGCAACCAAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCA
66 TGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCA
*
68441252 TCGGTAACCTAGG-CCTTGATCGTACGAGAA-CCTCGGGCA
131 TCGGTAACCTAGGCCCTTGGTCGTACG-GAAGCCTC-GGCA
* * * * *
68441291 CCATCGGTAACCTAGG-CCTTGATCGTGAGAGAACCTCGGGCACCATCGGCACCTTGGTGCTTGG
1 CCATCGG-CACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGCTTGG
** * *
68441355 ATGTGCGGGAGCCTCGAACACCATCGGCAACCTCGGCCCTTGGTCGTGCGGGAGCCTCGGGCACC
65 ATGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACC
* ** ** *
68441420 ATCGG-CACCTTTGTGCTTGGAT-GTACGGAAGCCTCGAGAA
130 ATCGGTAACCTAGGCCCTTGG-TCGTACGGAAGCCTCG-GCA
* * * ** * * *
68441460 GCATTGGCACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGGACACCATCGGCAACCTAGG-ACGTT
1 CCATCGGCACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTTGGTGC-TT
*
68441523 GGATGTGCGGGTGCCTCG
63 GGATGTGCGGGAGCCTCG
68441541 AGCAGCAGGG
Statistics
Matches: 499, Mismatches: 76, Indels: 28
0.83 0.13 0.05
Matches are distributed among these distances:
168 28 0.06
169 279 0.56
170 165 0.33
171 27 0.05
ACGTcount: A:0.16, C:0.31, G:0.34, T:0.19
Consensus pattern (169 bp):
CCATCGGCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGCTTGGA
TGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCA
TCGGTAACCTAGGCCCTTGGTCGTACGGAAGCCTCGGCA
Found at i:68463634 original size:85 final size:84
Alignment explanation
Indices: 68463488--68464477 Score: 578
Period size: 85 Copynumber: 11.7 Consensus size: 84
68463478 CACATCTGAG
* ** * * *
68463488 GCACCAGGGTGCCCCTGCTGCTCGAGGCAT-CCGCAC-ATCCAACGTCCTAGGTTGCCTATGGTG
1 GCACCAAGGTGCCGATGCTGCCCGAGGC-TCCCGCACGA-CCAA-GGCCTAGGTTGCCGATGGTG
* *
68463551 TCTGAGGCTCCCGCACATCCAA
63 CCCGAGGCTCCCGCACATCCAA
* * * *
68463573 GCACCAAGGTGCCAATGCTGCTCGAGGCTCCCGCAC-ATCCGAGGCAGCAAGG-TGCCGATGGTG
1 GCACCAAGGTGCCGATGCTGCCCGAGGCTCCCGCACGA-CCAAGGC--CTAGGTTGCCGATGGTG
* *
68463636 CCTGAGGCTCCCGCATGA-CCAA
63 CCCGAGGCTCCCGCA-CATCCAA
** * * * *
68463658 GGGCCTAGGTTACCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGT
1 GCACCAAGG-TGCCGATGCTGCCCGAGGCTCCCGCACGACCAA-GGCCTAGGTTGCCGATGGTGC
*
68463723 CCGAGGCTCCCGTACATCCAA
64 CCGAGGCTCCCGCACATCCAA
* * *
68463744 GCACGAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCTGAGGCCTAGGTTGCCGATGGTGCC
1 GCACCAAGGTGCCGATGCTGCCCGAGGCTCCCGCACGACC-AAGGCCTAGGTTGCCGATGGTGCC
*
68463809 CGAGGCTCCCGCACGA-CCAG
65 CGAGGCTCCCGCAC-ATCCAA
** * * * * * * *
68463829 GGGCCTAGGTGCCGATGGTGTCCGAGGCTCTCGCACGACC-AGGGCTAGGTTGTCGATAGTGCCC
1 GCACCAAGGTGCCGATGCTGCCCGAGGCTCCCGCACGACCAAGGCCTAGGTTGCCGATGGTGCCC
68463893 GA------CGCACGA-CCAA
66 GAGGCTCCCGCAC-ATCCAA
** * * * *
68463906 GGGCCTAGGTTGCCGATAG-TGCCCGAGGCTCCCGCACGACTAGGGGCCTAGGTTGTCGATGGTG
1 GCACCAAGG-TGCCGAT-GCTGCCCGAGGCTCCCGCACGACCA-AGGCCTAGGTTGCCGATGGTG
* *
68463970 -CCGAGGCTCTCGCACGA-CCAG
63 CCCGAGGCTCCCGCAC-ATCCAA
** * * * * * *
68463991 GGGCCTAGGTTACCGATGGTG-CCGAGGCTCTCGCACGACCAGGGGCCTAGGTTGCCGATGGTGT
1 GCACCAAGG-TGCCGATGCTGCCCGAGGCTCCCGCACGACCA-AGGCCTAGGTTGCCGATGGTGC
*
68464055 CCGAGGCTTCCGCACATCCAA
64 CCGAGGCTCCCGCACATCCAA
** * * * * *
68464076 GGGCCTAGGTTGCCGATGGTGTCCGAGGCTCCCGTAC-ATCCAAGCGCCAAGG-TGCCGATGGTG
1 GCACCAAGG-TGCCGATGCTGCCCGAGGCTCCCGCACGA-CCAAG-GCCTAGGTTGCCGATGGTG
* * *
68464139 TCC-AGGTTCCCGTACGA-CCAA
63 CCCGAGGCTCCCGCAC-ATCCAA
** * * * * ** *
68464160 GGGCCTAGGTTGCTGATGGTGTCCGAGGCTCCCGCACGACCAAGGGCCTAGGTCACGGATGGTG-
1 GCACCAAGG-TGCCGATGCTGCCCGAGGCTCCCGCACGACCAA-GGCCTAGGTTGCCGATGGTGC
* **
68464224 CCGAGGCTCTCGCTTGA-CCAA
64 CCGAGGCTCCCGC-ACATCCAA
** * * * *
68464245 GGGCCTAGGTTGCCCATGGTGCCCGAGGCTCCCGTACGACCAAGGGCCTAGGTTGCCGATGGTGC
1 GCACCAAGG-TGCCGATGCTGCCCGAGGCTCCCGCACGACCAA-GGCCTAGGTTGCCGATGGTGC
* * * **
68464310 TCGAGGCTCTCGTACGGCCAA
64 CCGAGGCTCCCGCACATCCAA
** * * * * ** * *
68464331 GGTCCTAGGTTGCCAATGGTG-CCGAGGCTCTCGCAC-ATCCTTGCACCAAGG-TGCCGATGGTG
1 GCACCAAGG-TGCCGATGCTGCCCGAGGCTCCCGCACGA-CCAAG-GCCTAGGTTGCCGATGGTG
* **
68464393 CCCAAGGCTCCCGCACATCTGA
63 CCCGAGGCTCCCGCACATCCAA
* * * * *
68464415 GCACCAAGGTGCTGATGGT-CACCGAGGCTCCTGTACGACCAAGAGCCTAGTTTGCCGATGGTG
1 GCACCAAGGTGCCGATGCTGC-CCGAGGCTCCCGCACGACCAAG-GCCTAGGTTGCCGATGGTG
68464478 TCTGAGGTGT
Statistics
Matches: 748, Mismatches: 116, Indels: 82
0.79 0.12 0.09
Matches are distributed among these distances:
77 19 0.03
78 26 0.03
79 5 0.01
80 18 0.02
83 31 0.04
84 156 0.21
85 368 0.49
86 121 0.16
87 4 0.01
ACGTcount: A:0.17, C:0.32, G:0.33, T:0.18
Consensus pattern (84 bp):
GCACCAAGGTGCCGATGCTGCCCGAGGCTCCCGCACGACCAAGGCCTAGGTTGCCGATGGTGCCC
GAGGCTCCCGCACATCCAA
Found at i:68463855 original size:42 final size:43
Alignment explanation
Indices: 68463533--68464484 Score: 870
Period size: 43 Copynumber: 22.6 Consensus size: 43
68463523 CATCCAACGT
* * **
68463533 CCTAGGTTGCCTATGGTGTCTGAGGCTCCCGCAC-ATCCAAGCA
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACGA-CCAAGGG
* * * *
68463576 CCAAGG-TGCCAATGCTG-CTCGAGGCTCCCGCAC-ATCCGA-GG
1 CCTAGGTTGCCGATGGTGTC-CGAGGCTCCCGCACGA-CCAAGGG
* *
68463617 CAGCAAGG-TGCCGATGGTG-CCTGAGGCTCCCGCATGACCAAGGG
1 C--CTAGGTTGCCGATGGTGTCC-GAGGCTCCCGCACGACCAAGGG
* *
68463661 CCTAGGTTACCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACGACCAAGGG
* **
68463704 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGTAC-ATCCAAGCA
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACGA-CCAAGGG
** * *
68463747 CGAAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACC-TGAGG
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACGACCAAG-GG
* *
68463789 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGG
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACGACCAAGGG
*
68463832 CCTAGG-TGCCGATGGTGTCCGAGGCTCTCGCACGACC-AGGG
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACGACCAAGGG
* * *
68463873 -CTAGGTTGTCGATAGTGCCCGA------CGCACGACCAAGGG
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACGACCAAGGG
* * * *
68463909 CCTAGGTTGCCGATAGTGCCCGAGGCTCCCGCACGACTAGGGG
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACGACCAAGGG
* * *
68463952 CCTAGGTTGTCGATGGTG-CCGAGGCTCTCGCACGACCAGGGG
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACGACCAAGGG
* * *
68463994 CCTAGGTTACCGATGGTG-CCGAGGCTCTCGCACGACCAGGGG
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACGACCAAGGG
*
68464036 CCTAGGTTGCCGATGGTGTCCGAGGCTTCCGCAC-ATCCAAGGG
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACGA-CCAAGGG
* *
68464079 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGTAC-ATCCAAGCG
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACGA-CCAAGGG
* * *
68464122 CCAAGG-TGCCGATGGTGTCC-AGGTTCCCGTACGACCAAGGG
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACGACCAAGGG
*
68464163 CCTAGGTTGCTGATGGTGTCCGAGGCTCCCGCACGACCAAGGG
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACGACCAAGGG
** * * **
68464206 CCTAGGTCACGGATGGTG-CCGAGGCTCTCGCTTGACCAAGGG
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACGACCAAGGG
* * *
68464248 CCTAGGTTGCCCATGGTGCCCGAGGCTCCCGTACGACCAAGGG
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACGACCAAGGG
* * * *
68464291 CCTAGGTTGCCGATGGTG-CTCGAGGCTCTCGTACGGCCAAGGT
1 CCTAGGTTGCCGATGGTGTC-CGAGGCTCCCGCACGACCAAGGG
* * ** **
68464334 CCTAGGTTGCCAATGGTG-CCGAGGCTCTCGCAC-ATCCTTGCA
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACGA-CCAAGGG
* * * ** **
68464376 CCAAGG-TGCCGATGGTGCCCAAGGCTCCCGCAC-ATCTGAGCA
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACGA-CCAAGGG
* * ** * * *
68464418 CCAAGG-TGCTGATGGTCACCGAGGCTCCTGTACGACCAAGAG
1 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACGACCAAGGG
* *
68464460 CCTAGTTTGCCGATGGTGTCTGAGG
1 CCTAGGTTGCCGATGGTGTCCGAGG
68464485 TGTCCGAGGC
Statistics
Matches: 770, Mismatches: 106, Indels: 66
0.82 0.11 0.07
Matches are distributed among these distances:
35 9 0.01
36 4 0.01
37 21 0.03
40 5 0.01
41 51 0.07
42 311 0.40
43 362 0.47
44 7 0.01
ACGTcount: A:0.17, C:0.31, G:0.33, T:0.18
Consensus pattern (43 bp):
CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACGACCAAGGG
Found at i:68463923 original size:37 final size:35
Alignment explanation
Indices: 68463860--68463931 Score: 117
Period size: 37 Copynumber: 2.0 Consensus size: 35
68463850 CCGAGGCTCT
*
68463860 CGCACGACCAGGGCTAGGTTGTCGATAGTGCCCGA
1 CGCACGACCAGGGCTAGGTTGCCGATAGTGCCCGA
68463895 CGCACGACCAAGGGCCTAGGTTGCCGATAGTGCCCGA
1 CGCACGACC-AGGG-CTAGGTTGCCGATAGTGCCCGA
68463932 GGCTCCCGCA
Statistics
Matches: 34, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
35 9 0.26
36 4 0.12
37 21 0.62
ACGTcount: A:0.21, C:0.31, G:0.33, T:0.15
Consensus pattern (35 bp):
CGCACGACCAGGGCTAGGTTGCCGATAGTGCCCGA
Found at i:68486095 original size:20 final size:20
Alignment explanation
Indices: 68486070--68486110 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
68486060 ACTACGTTTG
*
68486070 AAAATAAATAAT-TATAATAA
1 AAAATAAAAAATATAT-ATAA
68486090 AAAATAAAAAATATATATAA
1 AAAATAAAAAATATATATAA
68486110 A
1 A
68486111 TGAAAGTATA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 16 0.84
21 3 0.16
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (20 bp):
AAAATAAAAAATATATATAA
Found at i:68486682 original size:14 final size:14
Alignment explanation
Indices: 68486663--68486690 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
68486653 TAAATTCTAG
68486663 TTAAAATTTGATTT
1 TTAAAATTTGATTT
68486677 TTAAAATTTGATTT
1 TTAAAATTTGATTT
68486691 ATTTAGTGAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.00, G:0.07, T:0.57
Consensus pattern (14 bp):
TTAAAATTTGATTT
Found at i:68486708 original size:13 final size:13
Alignment explanation
Indices: 68486690--68486768 Score: 71
Period size: 13 Copynumber: 6.5 Consensus size: 13
68486680 AAATTTGATT
68486690 TATTTAGTGAAAA
1 TATTTAGTGAAAA
*
68486703 TATTTA--G-AAT
1 TATTTAGTGAAAA
*
68486713 TATTTAGTGACAA
1 TATTTAGTGAAAA
*
68486726 TATTTAGTGATAA
1 TATTTAGTGAAAA
*
68486739 TATTTAG-G--AT
1 TATTTAGTGAAAA
*
68486749 TATTTAGTGATAA
1 TATTTAGTGAAAA
68486762 TATTTAG
1 TATTTAG
68486769 AAAAAATCTA
Statistics
Matches: 54, Mismatches: 6, Indels: 12
0.75 0.08 0.17
Matches are distributed among these distances:
10 16 0.30
11 2 0.04
12 2 0.04
13 34 0.63
ACGTcount: A:0.38, C:0.01, G:0.15, T:0.46
Consensus pattern (13 bp):
TATTTAGTGAAAA
Found at i:68486715 original size:23 final size:23
Alignment explanation
Indices: 68486689--68486732 Score: 79
Period size: 23 Copynumber: 1.9 Consensus size: 23
68486679 AAAATTTGAT
68486689 TTATTTAGTGAAAATATTTAGAA
1 TTATTTAGTGAAAATATTTAGAA
*
68486712 TTATTTAGTGACAATATTTAG
1 TTATTTAGTGAAAATATTTAG
68486733 TGATAATATT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.39, C:0.02, G:0.14, T:0.45
Consensus pattern (23 bp):
TTATTTAGTGAAAATATTTAGAA
Found at i:68486730 original size:36 final size:36
Alignment explanation
Indices: 68486690--68486768 Score: 131
Period size: 36 Copynumber: 2.2 Consensus size: 36
68486680 AAATTTGATT
68486690 TATTTAGTGAAAATATTTAGAATTATTTAGTGACAA
1 TATTTAGTGAAAATATTTAGAATTATTTAGTGACAA
* * *
68486726 TATTTAGTGATAATATTTAGGATTATTTAGTGATAA
1 TATTTAGTGAAAATATTTAGAATTATTTAGTGACAA
68486762 TATTTAG
1 TATTTAG
68486769 AAAAAATCTA
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
36 40 1.00
ACGTcount: A:0.38, C:0.01, G:0.15, T:0.46
Consensus pattern (36 bp):
TATTTAGTGAAAATATTTAGAATTATTTAGTGACAA
Found at i:68491415 original size:22 final size:23
Alignment explanation
Indices: 68491390--68491438 Score: 73
Period size: 23 Copynumber: 2.2 Consensus size: 23
68491380 ACATTTTTAT
* *
68491390 ATTTAC-TTTTTTTTAACAATAC
1 ATTTACATTTTTTTGAACAAAAC
68491412 ATTTACATTTTTTTGAACAAAAC
1 ATTTACATTTTTTTGAACAAAAC
68491435 ATTT
1 ATTT
68491439 TTAAATAATT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
22 6 0.25
23 18 0.75
ACGTcount: A:0.35, C:0.12, G:0.02, T:0.51
Consensus pattern (23 bp):
ATTTACATTTTTTTGAACAAAAC
Found at i:68491834 original size:9 final size:9
Alignment explanation
Indices: 68491817--68491851 Score: 54
Period size: 9 Copynumber: 3.9 Consensus size: 9
68491807 AAATTATTAA
68491817 AATATAATAT
1 AATA-AATAT
68491827 AATAAATAT
1 AATAAATAT
68491836 AATAAAT-T
1 AATAAATAT
68491844 AATAAATA
1 AATAAATA
68491852 GATAAAACTA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
8 8 0.33
9 12 0.50
10 4 0.17
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (9 bp):
AATAAATAT
Found at i:68491835 original size:14 final size:13
Alignment explanation
Indices: 68491816--68491857 Score: 50
Period size: 14 Copynumber: 3.2 Consensus size: 13
68491806 GAAATTATTA
68491816 AAATATAATATAAT
1 AAATATAATA-AAT
68491830 AAATATAATAAAT
1 AAATATAATAAAT
* *
68491843 TAATA-AATAGAT
1 AAATATAATAAAT
68491855 AAA
1 AAA
68491858 ACTATTTACA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
12 8 0.32
13 7 0.28
14 10 0.40
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.31
Consensus pattern (13 bp):
AAATATAATAAAT
Found at i:68492999 original size:16 final size:18
Alignment explanation
Indices: 68492975--68493007 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
68492965 ATGAAAAGTA
68492975 TTATGTAAAAA-TTATAT
1 TTATGTAAAAACTTATAT
68492992 TTAT-TAAAAACTTATA
1 TTATGTAAAAACTTATA
68493008 AGAATTAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.48, C:0.03, G:0.03, T:0.45
Consensus pattern (18 bp):
TTATGTAAAAACTTATAT
Found at i:68497785 original size:27 final size:27
Alignment explanation
Indices: 68497744--68497795 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
68497734 ACAAGTGAGG
68497744 AAAAAGAGAAAGAGAATGAAAAAGAGC
1 AAAAAGAGAAAGAGAATGAAAAAGAGC
** *
68497771 AAAAAGAGATTGAGAGTGAAAAAGA
1 AAAAAGAGAAAGAGAATGAAAAAGA
68497796 AATTGAAGAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.63, C:0.02, G:0.27, T:0.08
Consensus pattern (27 bp):
AAAAAGAGAAAGAGAATGAAAAAGAGC
Found at i:68507246 original size:19 final size:17
Alignment explanation
Indices: 68507224--68507263 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 17
68507214 ATTCTTTAGG
68507224 TTTTTTAAAAAATAAATAA
1 TTTTTT-AAAAATAAA-AA
68507243 TTTTTTAAAAATAAAAA
1 TTTTTTAAAAATAAAAA
68507260 TTTT
1 TTTT
68507264 AGATTCTTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
17 6 0.29
18 9 0.43
19 6 0.29
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (17 bp):
TTTTTTAAAAATAAAAA
Found at i:68507284 original size:22 final size:21
Alignment explanation
Indices: 68507253--68507295 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 21
68507243 TTTTTTAAAA
*
68507253 ATAAAAATTTTAGATTCTTTTT
1 ATAAAAATTTTAAATT-TTTTT
*
68507275 ATAAATATTTTAAATTTTTTT
1 ATAAAAATTTTAAATTTTTTT
68507296 GTAATTTTTG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 5 0.26
22 14 0.74
ACGTcount: A:0.37, C:0.02, G:0.02, T:0.58
Consensus pattern (21 bp):
ATAAAAATTTTAAATTTTTTT
Found at i:68510624 original size:11 final size:12
Alignment explanation
Indices: 68510594--68510627 Score: 61
Period size: 12 Copynumber: 2.9 Consensus size: 12
68510584 CGGCCTGCCC
68510594 ATATTAATTTTT
1 ATATTAATTTTT
68510606 ATATTAATTTTT
1 ATATTAATTTTT
68510618 ATA-TAATTTT
1 ATATTAATTTT
68510628 AAAATATATA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
11 7 0.32
12 15 0.68
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (12 bp):
ATATTAATTTTT
Found at i:68513720 original size:47 final size:46
Alignment explanation
Indices: 68513564--68513824 Score: 210
Period size: 47 Copynumber: 5.5 Consensus size: 46
68513554 ATGCCGATGC
**
68513564 CATGTCCCAGACATGGTCTTACACTGGC-TCATCCATCGA-ATC-AATG
1 CATGTCCCAGACATGGTCTTACACTGGCTTCAT-C-TCGAGGCCGAA-G
* * ** * *
68513610 CCATGTCCCAGATATGGTCTTACACTGACTATCGAAATTGAGGCCGACG
1 -CATGTCCCAGACATGGTCTTACACTGGCT-TC-ATCTCGAGGCCGAAG
68513659 CCATGTCCCAGACATGGTCTTACACTGGCTTACATCTCGAGGCCGAAG
1 -CATGTCCCAGACATGGTCTTACACTGGCTT-CATCTCGAGGCCGAAG
* * * * * *
68513707 CATGTCCCAGACAT-GTCTTACACTAGCACTCGTCTCAATGCCGATG
1 CATGTCCCAGACATGGTCTTACACTGGC-TTCATCTCGAGGCCGAAG
* * * *
68513753 CTATGTCCCAAACATGGTCTTACACTGGCTCTCCTAAT-GAGGCCGATG
1 C-ATGTCCCAGACATGGTCTTACACTGGCT-TCAT-CTCGAGGCCGAAG
68513801 CATGTCCCAGACAT-GTCTTACACT
1 CATGTCCCAGACATGGTCTTACACT
68513825 AACTCACACA
Statistics
Matches: 175, Mismatches: 28, Indels: 23
0.77 0.12 0.10
Matches are distributed among these distances:
46 35 0.20
47 65 0.37
48 39 0.22
49 34 0.19
50 2 0.01
ACGTcount: A:0.25, C:0.30, G:0.20, T:0.26
Consensus pattern (46 bp):
CATGTCCCAGACATGGTCTTACACTGGCTTCATCTCGAGGCCGAAG
Found at i:68513813 original size:94 final size:92
Alignment explanation
Indices: 68513553--68513825 Score: 295
Period size: 94 Copynumber: 2.9 Consensus size: 92
68513543 CATAGGGTAT
** *
68513553 AATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCC-ATCGA-ATCAATGCCATGT
1 AATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTC-TCCAATCGAGGCCGATG-CATGT
*
68513616 CCCAGATATGGTCTTACACT-GACTATCGA
64 CCCAGACAT-GTCTTACACTAGACTATCGA
* * * *
68513645 AATTGAGGCCGACGCCATGTCCCAGACATGGTCTTACACTGGCT-TACATCTCGAGGCCGAAGCA
1 AA-T---GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCCA-ATCGAGGCCGATGCA
* **
68513709 TGTCCCAGACATGTCTTACACTAGCACTCGTCTC
61 TGTCCCAGACATGTCTTACACTAG-ACT-ATCGA
* *
68513743 AATGCCGATGCTATGTCCCAAACATGGTCTTACACTGGCTCTCCTAAT-GAGGCCGATGCATGTC
1 AATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCC-AATCGAGGCCGATGCATGTC
68513807 CCAGACATGTCTTACACTA
65 CCAGACATGTCTTACACTA
68513826 ACTCACACAA
Statistics
Matches: 152, Mismatches: 17, Indels: 22
0.80 0.09 0.12
Matches are distributed among these distances:
92 2 0.01
93 1 0.01
94 70 0.46
95 13 0.09
96 55 0.36
97 7 0.05
98 4 0.03
ACGTcount: A:0.25, C:0.30, G:0.20, T:0.25
Consensus pattern (92 bp):
AATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCCAATCGAGGCCGATGCATGTCC
CAGACATGTCTTACACTAGACTATCGA
Found at i:68522781 original size:23 final size:23
Alignment explanation
Indices: 68522755--68522800 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
68522745 AATGATAGAT
68522755 TAGTAAATGTTTGTACATGAACA
1 TAGTAAATGTTTGTACATGAACA
* *
68522778 TAGTAGATTTTTGTACATGAACA
1 TAGTAAATGTTTGTACATGAACA
68522801 CTTGTCGAGA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.37, C:0.09, G:0.17, T:0.37
Consensus pattern (23 bp):
TAGTAAATGTTTGTACATGAACA
Found at i:68525716 original size:36 final size:36
Alignment explanation
Indices: 68525676--68525746 Score: 142
Period size: 36 Copynumber: 2.0 Consensus size: 36
68525666 TTTAATGTTG
68525676 GAATTATTATTTTTTGTTGCAAGTAATATTATCCTC
1 GAATTATTATTTTTTGTTGCAAGTAATATTATCCTC
68525712 GAATTATTATTTTTTGTTGCAAGTAATATTATCCT
1 GAATTATTATTTTTTGTTGCAAGTAATATTATCCT
68525747 TTCTTTCTTA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.28, C:0.10, G:0.11, T:0.51
Consensus pattern (36 bp):
GAATTATTATTTTTTGTTGCAAGTAATATTATCCTC
Found at i:68525787 original size:17 final size:16
Alignment explanation
Indices: 68525761--68525794 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
68525751 TTCTTATGGC
*
68525761 TATTATATTTGATATAT
1 TATTAAATTT-ATATAT
68525778 TATTAAATTTATATAT
1 TATTAAATTTATATAT
68525794 T
1 T
68525795 CTCATATTGA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.59
Consensus pattern (16 bp):
TATTAAATTTATATAT
Found at i:68529521 original size:23 final size:23
Alignment explanation
Indices: 68529477--68529521 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
68529467 ATTTTCCATA
*
68529477 AATTATTTCACAATGAATAACAC
1 AATTATTTCACAATGAAGAACAC
*
68529500 AATTATATT-ACAATTAAGAACA
1 AATTAT-TTCACAATGAAGAACA
68529522 TACATTTGAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 17 0.89
24 2 0.11
ACGTcount: A:0.51, C:0.13, G:0.04, T:0.31
Consensus pattern (23 bp):
AATTATTTCACAATGAAGAACAC
Found at i:68549706 original size:24 final size:24
Alignment explanation
Indices: 68549671--68549721 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
68549661 AAGTCTGTCA
* **
68549671 GGATAGGATTTAGGAGTTGATAAG
1 GGATAGGATTTAAGAGCAGATAAG
*
68549695 GGATAGGTTTTAAGAGCAGATAAG
1 GGATAGGATTTAAGAGCAGATAAG
68549719 GGA
1 GGA
68549722 GGAAATCTAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.35, C:0.02, G:0.37, T:0.25
Consensus pattern (24 bp):
GGATAGGATTTAAGAGCAGATAAG
Found at i:68551124 original size:27 final size:26
Alignment explanation
Indices: 68551084--68551167 Score: 100
Period size: 24 Copynumber: 3.2 Consensus size: 26
68551074 AGGAAGCGTC
68551084 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTATGCCAC-ATTATCTGAT
* * *
68551111 CTGGTGGCTTTGCCACATTTTCT-TT
1 CTGGTGGCTATGCCACATTATCTGAT
*
68551136 CTGGT-GCTCTGCCACATTATCTGTAT
1 CTGGTGGCTATGCCACATTATCTG-AT
68551162 CTGGTG
1 CTGGTG
68551168 ACTCCGTAAT
Statistics
Matches: 48, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
24 15 0.31
25 6 0.12
26 12 0.25
27 15 0.31
ACGTcount: A:0.14, C:0.24, G:0.23, T:0.39
Consensus pattern (26 bp):
CTGGTGGCTATGCCACATTATCTGAT
Found at i:68552140 original size:18 final size:19
Alignment explanation
Indices: 68552098--68552141 Score: 65
Period size: 19 Copynumber: 2.4 Consensus size: 19
68552088 GTTTTTAGTT
68552098 TGTAA-TTTTATATAATTA
1 TGTAATTTTTATATAATTA
68552116 TGTTAATTTTTATAT-ATTA
1 TG-TAATTTTTATATAATTA
68552135 TGTAATT
1 TGTAATT
68552142 ATTAACATAT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
18 7 0.29
19 9 0.38
20 8 0.33
ACGTcount: A:0.34, C:0.00, G:0.07, T:0.59
Consensus pattern (19 bp):
TGTAATTTTTATATAATTA
Found at i:68564648 original size:43 final size:43
Alignment explanation
Indices: 68564600--68564757 Score: 171
Period size: 43 Copynumber: 3.7 Consensus size: 43
68564590 AGCTTGTACA
* *
68564600 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCAAATATTG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTAATCAAATATCG
* *
68564643 ATGCC-ACTGTCCCAGACAG-GGTCTTACGCGGAATCAAATA-CG
1 ATGCCAAC-GTCCCAGAC-GTGGTCTTACACGTAATCAAATATCG
* * *
68564685 ATGCCAATGTCCCAGACTTGGTCTTACACGTAAATCATAA-GTCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGT-AATCA-AATATCG
* *
68564729 ATGCCAACATTCCAGACGTGGTCTTACAC
1 ATGCCAACGTCCCAGACGTGGTCTTACAC
68564758 CAAAACACAT
Statistics
Matches: 95, Mismatches: 13, Indels: 13
0.79 0.11 0.11
Matches are distributed among these distances:
42 27 0.28
43 38 0.40
44 30 0.32
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.25
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACGTGGTCTTACACGTAATCAAATATCG
Found at i:68565411 original size:24 final size:24
Alignment explanation
Indices: 68565384--68565443 Score: 68
Period size: 24 Copynumber: 2.5 Consensus size: 24
68565374 ATGTATTATA
*
68565384 TATATTTAATTATTCTCATGGTTT
1 TATATTTAATTATTATCATGGTTT
** *
68565408 TATATAAAATTATTATTATGGTTT
1 TATATTTAATTATTATCATGGTTT
*
68565432 TATAATT-ATTAT
1 TATATTTAATTAT
68565444 GATTATTTAA
Statistics
Matches: 29, Mismatches: 7, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
23 5 0.17
24 24 0.83
ACGTcount: A:0.33, C:0.03, G:0.07, T:0.57
Consensus pattern (24 bp):
TATATTTAATTATTATCATGGTTT
Found at i:68565513 original size:17 final size:16
Alignment explanation
Indices: 68565491--68565533 Score: 52
Period size: 17 Copynumber: 2.6 Consensus size: 16
68565481 TAGTTGATAA
68565491 ATATATGGTAATAAAAT
1 ATATATGGTAA-AAAAT
*
68565508 ATATATGTGTAAAAATT
1 ATATATG-GTAAAAAAT
68565525 ATAT-TGGTA
1 ATATATGGTA
68565534 CATTTGTAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
15 3 0.12
16 2 0.08
17 15 0.62
18 4 0.17
ACGTcount: A:0.47, C:0.00, G:0.14, T:0.40
Consensus pattern (16 bp):
ATATATGGTAAAAAAT
Found at i:68586639 original size:2 final size:2
Alignment explanation
Indices: 68586632--68586659 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
68586622 TACGGTAGAT
68586632 AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG
68586660 TAAGAAAACA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:68594255 original size:27 final size:26
Alignment explanation
Indices: 68594225--68594307 Score: 71
Period size: 25 Copynumber: 3.2 Consensus size: 26
68594215 TTAAATACAT
* *
68594225 ATATTAGTAATAAT-TATTTTACTTATA
1 ATATAAGTAA-AATATATTATA-TTATA
68594252 ATATAAGTAAAATATATTATATTATA
1 ATATAAGTAAAATATATTATATTATA
* * * *
68594278 TTAT-ATTATATTATATTATATTATA
1 ATATAAGTAAAATATATTATATTATA
*
68594303 TTATA
1 ATATA
68594308 TTATATTATT
Statistics
Matches: 48, Mismatches: 6, Indels: 5
0.81 0.10 0.08
Matches are distributed among these distances:
25 22 0.46
26 11 0.23
27 15 0.31
ACGTcount: A:0.45, C:0.01, G:0.02, T:0.52
Consensus pattern (26 bp):
ATATAAGTAAAATATATTATATTATA
Found at i:68594272 original size:5 final size:5
Alignment explanation
Indices: 68594264--68594321 Score: 107
Period size: 5 Copynumber: 11.4 Consensus size: 5
68594254 ATAAGTAAAA
68594264 TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT
1 TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT
68594314 TATTAT TA
1 TA-TAT TA
68594322 ACATAAAATA
Statistics
Matches: 52, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
5 47 0.90
6 5 0.10
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (5 bp):
TATAT
Found at i:68594376 original size:13 final size:12
Alignment explanation
Indices: 68594360--68594423 Score: 58
Period size: 13 Copynumber: 5.1 Consensus size: 12
68594350 AATAATGAAA
68594360 AGAAAGAAATAAG
1 AGAAAGAAA-AAG
*
68594373 AGAAATGAAACAG
1 AGAAA-GAAAAAG
*
68594386 AGAAGGGAAAGAA-
1 AGAA-AGAAA-AAG
68594399 AGAAAGAAAAAG
1 AGAAAGAAAAAG
*
68594411 GGAAAGAAAAAG
1 AGAAAGAAAAAG
68594423 A
1 A
68594424 AAGAGAAATT
Statistics
Matches: 41, Mismatches: 6, Indels: 9
0.73 0.11 0.16
Matches are distributed among these distances:
11 2 0.05
12 15 0.37
13 19 0.46
14 5 0.12
ACGTcount: A:0.67, C:0.02, G:0.28, T:0.03
Consensus pattern (12 bp):
AGAAAGAAAAAG
Found at i:68594389 original size:26 final size:24
Alignment explanation
Indices: 68594360--68594431 Score: 58
Period size: 24 Copynumber: 2.9 Consensus size: 24
68594350 AATAATGAAA
*
68594360 AGAAAGAAATAAGAGAAATGAAACAG
1 AGAAAGAAA-AAGAGAAA-GAAAAAG
*
68594386 AGAAGGGAAAGAA-AGAAAGAAAAAG
1 AGAA-AGAAA-AAGAGAAAGAAAAAG
*
68594411 GGAAAGAAAAAGA-AAGAGAAA
1 AGAAAGAAAAAGAGAA-AGAAA
68594432 TTAGGGTTTA
Statistics
Matches: 38, Mismatches: 5, Indels: 8
0.75 0.10 0.16
Matches are distributed among these distances:
23 4 0.11
24 10 0.26
25 9 0.24
26 9 0.24
27 6 0.16
ACGTcount: A:0.68, C:0.01, G:0.28, T:0.03
Consensus pattern (24 bp):
AGAAAGAAAAAGAGAAAGAAAAAG
Found at i:68594824 original size:18 final size:18
Alignment explanation
Indices: 68594801--68594843 Score: 68
Period size: 18 Copynumber: 2.4 Consensus size: 18
68594791 AGTCAGCTAA
68594801 AATTTAGGACTAAATTAG
1 AATTTAGGACTAAATTAG
* *
68594819 AATTTAAGACTAAATTGG
1 AATTTAGGACTAAATTAG
68594837 AATTTAG
1 AATTTAG
68594844 ATAAAAGTTT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.44, C:0.05, G:0.16, T:0.35
Consensus pattern (18 bp):
AATTTAGGACTAAATTAG
Found at i:68595127 original size:27 final size:26
Alignment explanation
Indices: 68595088--68595160 Score: 82
Period size: 27 Copynumber: 2.9 Consensus size: 26
68595078 TGAAACATGA
68595088 GAATGATTGAAATGTGTATTGAATTG
1 GAATGATTGAAATGTGTATTGAATTG
*
68595114 GAATTGATTGAAAT-TGATATT-ATTTG
1 GAA-TGATTGAAATGTG-TATTGAATTG
*
68595140 GAA--ATTGAAATGTGAATTGAA
1 GAATGATTGAAATGTGTATTGAA
68595161 AACCCTATTA
Statistics
Matches: 40, Mismatches: 3, Indels: 10
0.75 0.06 0.19
Matches are distributed among these distances:
23 11 0.28
24 3 0.08
26 12 0.30
27 14 0.35
ACGTcount: A:0.38, C:0.00, G:0.23, T:0.38
Consensus pattern (26 bp):
GAATGATTGAAATGTGTATTGAATTG
Found at i:68596297 original size:41 final size:42
Alignment explanation
Indices: 68596215--68596329 Score: 126
Period size: 41 Copynumber: 2.8 Consensus size: 42
68596205 TTTTGAGTCC
* * *
68596215 ACACGGCCTAGCACACGGGCATGTGGGCAGACTGTGCGAGAT
1 ACACGGCCTGGCACACGGGCATGTAGGCAAACTGTGCGAGAT
* *
68596257 ACACAGCCTGGCACA-GGGCATGTAGGCAAA-TCGTGTGAGAT
1 ACACGGCCTGGCACACGGGCATGTAGGCAAACT-GTGCGAGAT
* ** *
68596298 ATACGGAATGGCACACGGGCGTGTAGGCAAAC
1 ACACGGCCTGGCACACGGGCATGTAGGCAAAC
68596330 AATGTGAGAC
Statistics
Matches: 60, Mismatches: 10, Indels: 5
0.80 0.13 0.07
Matches are distributed among these distances:
40 1 0.02
41 32 0.53
42 27 0.45
ACGTcount: A:0.28, C:0.23, G:0.34, T:0.15
Consensus pattern (42 bp):
ACACGGCCTGGCACACGGGCATGTAGGCAAACTGTGCGAGAT
Found at i:68604231 original size:11 final size:11
Alignment explanation
Indices: 68604215--68604239 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
68604205 GAGTTTAGGA
68604215 AGCAACAAGGG
1 AGCAACAAGGG
68604226 AGCAACAAGGG
1 AGCAACAAGGG
68604237 AGC
1 AGC
68604240 CAGAGGGTAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.44, C:0.20, G:0.36, T:0.00
Consensus pattern (11 bp):
AGCAACAAGGG
Found at i:68608350 original size:19 final size:20
Alignment explanation
Indices: 68608326--68608363 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
68608316 GAGCTGTAGG
*
68608326 AGCTAA-GACAAGTTAAATA
1 AGCTAAGGACAACTTAAATA
68608345 AGCTAAGGACAACTTAAAT
1 AGCTAAGGACAACTTAAAT
68608364 GGCTATAGTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 6 0.35
20 11 0.65
ACGTcount: A:0.50, C:0.13, G:0.16, T:0.21
Consensus pattern (20 bp):
AGCTAAGGACAACTTAAATA
Found at i:68609562 original size:27 final size:26
Alignment explanation
Indices: 68609490--68609601 Score: 116
Period size: 27 Copynumber: 4.2 Consensus size: 26
68609480 AGCATGGCTG
** *
68609490 CCAGAACAGATAATGTGATAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
* * *
68609516 TCAGATACAGTTGATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
68609544 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* *
68609571 CCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAA-TGTGGCAGAGCCA
68609598 CCAG
1 CCAG
68609602 GACGCTTCCT
Statistics
Matches: 71, Mismatches: 11, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
26 5 0.07
27 51 0.72
28 15 0.21
ACGTcount: A:0.35, C:0.21, G:0.25, T:0.19
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:68609590 original size:54 final size:54
Alignment explanation
Indices: 68609490--68609601 Score: 136
Period size: 54 Copynumber: 2.1 Consensus size: 54
68609480 AGCATGGCTG
* * * * *
68609490 CCAGAACAGATAATGTGATAGAGTCATCAGATACAGTTGATCGTGGCAGAGCCA
1 CCAGAACAGATAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
* * *
68609544 CCAGAACAGATATATGTGGCAGAGCCACCAGAT-CAGATAATTGTGGCATAGCCA
1 CCAGAACAGATA-ATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
68609598 CCAG
1 CCAG
68609602 GACGCTTCCT
Statistics
Matches: 49, Mismatches: 8, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
54 33 0.67
55 16 0.33
ACGTcount: A:0.35, C:0.21, G:0.25, T:0.19
Consensus pattern (54 bp):
CCAGAACAGATAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
Found at i:68617101 original size:36 final size:36
Alignment explanation
Indices: 68617059--68617130 Score: 87
Period size: 36 Copynumber: 2.0 Consensus size: 36
68617049 CTTTTTCCTT
68617059 TCTTTTTCTCGTT-TT-TCTTTTCTTTCT-CTTTTTCAA
1 TCTTTTTCTC-TTGTTAT-TTTTCTTT-TGCTTTTTCAA
*
68617095 TCTTTTTTTCTTGTTATTTTTCTTTTGCTTTTTCAA
1 TCTTTTTCTCTTGTTATTTTTCTTTTGCTTTTTCAA
68617131 CAGATTCTTT
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
35 3 0.09
36 28 0.88
37 1 0.03
ACGTcount: A:0.07, C:0.18, G:0.04, T:0.71
Consensus pattern (36 bp):
TCTTTTTCTCTTGTTATTTTTCTTTTGCTTTTTCAA
Found at i:68619462 original size:15 final size:15
Alignment explanation
Indices: 68619444--68619474 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
68619434 TGTCTAAAAG
68619444 AAAGTTAGTTAAACA
1 AAAGTTAGTTAAACA
*
68619459 AAAGTTGGTTAAACA
1 AAAGTTAGTTAAACA
68619474 A
1 A
68619475 GGAATGGTAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.52, C:0.06, G:0.16, T:0.26
Consensus pattern (15 bp):
AAAGTTAGTTAAACA
Found at i:68631623 original size:21 final size:23
Alignment explanation
Indices: 68631575--68631623 Score: 59
Period size: 21 Copynumber: 2.2 Consensus size: 23
68631565 TGATGATATA
*
68631575 TGTAAATAGTATGTGAAATTTGT
1 TGTAAATAGTATGTGAAATTGGT
68631598 TGTAAAT-G-ATGTGAAA-TGGT
1 TGTAAATAGTATGTGAAATTGGT
68631618 TAGTAA
1 T-GTAA
68631624 TTGTGACAGC
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
20 4 0.17
21 12 0.50
22 1 0.04
23 7 0.29
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (23 bp):
TGTAAATAGTATGTGAAATTGGT
Found at i:68634663 original size:38 final size:38
Alignment explanation
Indices: 68634612--68634697 Score: 136
Period size: 38 Copynumber: 2.3 Consensus size: 38
68634602 ATATTTGATG
* *
68634612 TATATCCGGGTTAAATCCCACAGGCTTCGTGCTGGTAT
1 TATATCCGGGTTAAATCCCACAGGCCTAGTGCTGGTAT
*
68634650 TATATCCGGGTTAAATCCCGCAGGCCTAGTGCTGGTAT
1 TATATCCGGGTTAAATCCCACAGGCCTAGTGCTGGTAT
*
68634688 TATATTCGGG
1 TATATCCGGG
68634698 CCTTTGAGCC
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
38 44 1.00
ACGTcount: A:0.21, C:0.22, G:0.26, T:0.31
Consensus pattern (38 bp):
TATATCCGGGTTAAATCCCACAGGCCTAGTGCTGGTAT
Found at i:68634730 original size:25 final size:25
Alignment explanation
Indices: 68634702--68634775 Score: 61
Period size: 25 Copynumber: 3.2 Consensus size: 25
68634692 TTCGGGCCTT
68634702 TGAGCCTAGCAGGCTATTATGCCGG
1 TGAGCCTAGCAGGCTATTATGCCGG
** **
68634727 TGAG---A-CA--CTATTCGGGCCTT
1 TGAGCCTAGCAGGCTATT-ATGCCGG
68634747 TGAGCCTAGCAGGCTATTATGCCGG
1 TGAGCCTAGCAGGCTATTATGCCGG
68634772 TGAG
1 TGAG
68634776 ACACTATTCG
Statistics
Matches: 34, Mismatches: 8, Indels: 14
0.61 0.14 0.25
Matches are distributed among these distances:
19 5 0.15
20 7 0.21
21 2 0.06
22 1 0.03
23 1 0.03
24 2 0.06
25 11 0.32
26 5 0.15
ACGTcount: A:0.20, C:0.23, G:0.31, T:0.26
Consensus pattern (25 bp):
TGAGCCTAGCAGGCTATTATGCCGG
Found at i:68634740 original size:45 final size:45
Alignment explanation
Indices: 68634690--68634954 Score: 379
Period size: 45 Copynumber: 5.9 Consensus size: 45
68634680 GCTGGTATTA
68634690 TATTCGGGCCTTTGAGCCTAGCAGGCTATTATGCCGGTGAGACAC
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATTATGCCGGTGAGACAC
68634735 TATTCGGGCCTTTGAGCCTAGCAGGCTATTATGCCGGTGAGACAC
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATTATGCCGGTGAGACAC
* * *
68634780 TATTCGGGCCTTTGAGCCTAGTAGGCTGTTATGCCGGTGAGACAT
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATTATGCCGGTGAGACAC
* * * * * *
68634825 TATTCAGGCCTTTAAGCCTAGCAGGCTATGATGTCGGTGAAATAC
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATTATGCCGGTGAGACAC
* * *
68634870 TATTCAGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAC
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATTATGCCGGTGAGACAC
* * *
68634915 TATTTGGG-CTTTCGAGCCTAGCAGGCTATAATGTCGGTGA
1 TATTCGGGCCTTT-GAGCCTAGCAGGCTATTATGCCGGTGA
68634955 AATGATAATT
Statistics
Matches: 200, Mismatches: 19, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
44 4 0.02
45 196 0.98
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.29
Consensus pattern (45 bp):
TATTCGGGCCTTTGAGCCTAGCAGGCTATTATGCCGGTGAGACAC
Found at i:68634843 original size:90 final size:90
Alignment explanation
Indices: 68634690--68634997 Score: 383
Period size: 90 Copynumber: 3.4 Consensus size: 90
68634680 GCTGGTATTA
*
68634690 TATTCGGGCCTTTGAGCCTAGCAGGCTATTATGCCGGTGAGACACTATTCGGGCCTTTGAGCCTA
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATTATGCCGGTGAGACACTATTCAGGCCTTTGAGCCTA
* * *
68634755 GCAGGCTATTATGCCGGTGAGACAC
66 GCAGGCTATAATGTCGGTGAAACAC
* * * *
68634780 TATTCGGGCCTTTGAGCCTAGTAGGCTGTTATGCCGGTGAGACATTATTCAGGCCTTTAAGCCTA
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATTATGCCGGTGAGACACTATTCAGGCCTTTGAGCCTA
* *
68634845 GCAGGCTATGATGTCGGTGAAATAC
66 GCAGGCTATAATGTCGGTGAAACAC
* * * * *
68634870 TATTCAGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATACTATT-TGGGCTTTCGAGCCT
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATTATGCCGGTGAGACACTATTCAGGCCTTT-GAGCCT
*
68634934 AGCAGGCTATAATGTCGGTGAAATGA-
65 AGCAGGCTATAATGTCGGTGAAA-CAC
* **
68634960 TAATT-GGGCC-TCGAGCCTAGCAGGC-AAAATGCCGGTGA
1 T-ATTCGGGCCTTTGAGCCTAGCAGGCTATTATGCCGGTGA
68634998 TTTGAGAAAA
Statistics
Matches: 192, Mismatches: 23, Indels: 8
0.86 0.10 0.04
Matches are distributed among these distances:
88 12 0.06
89 20 0.10
90 156 0.81
91 4 0.02
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.27
Consensus pattern (90 bp):
TATTCGGGCCTTTGAGCCTAGCAGGCTATTATGCCGGTGAGACACTATTCAGGCCTTTGAGCCTA
GCAGGCTATAATGTCGGTGAAACAC
Found at i:68634967 original size:45 final size:45
Alignment explanation
Indices: 68634699--68634997 Score: 235
Period size: 45 Copynumber: 6.7 Consensus size: 45
68634689 ATATTCGGGC
* * *
68634699 CTTT-GAGCCTAGCAGGCTATTATGCCGGTGAGACACT-ATTCGGG
1 CTTTCGAGCCTAGCAGGCTATAATGCCGGTGAAATACTAATT-GGG
* * *
68634743 CCTTT-GAGCCTAGCAGGCTATTATGCCGGTGAGACACT-ATTCGGG
1 -CTTTCGAGCCTAGCAGGCTATAATGCCGGTGAAATACTAATT-GGG
* * * * * * *
68634788 CCTTT-GAGCCTAGTAGGCTGTTATGCCGGTGAGACA-TTATTCAGGC
1 -CTTTCGAGCCTAGCAGGCTATAATGCCGGTGAAATACTAATT--GGG
* * * *
68634834 CTTT-AAGCCTAGCAGGCTATGATGTCGGTGAAATACT-ATTCAGGC
1 CTTTCGAGCCTAGCAGGCTATAATGCCGGTGAAATACTAATT--GGG
* *
68634879 CTTT-GAGCCTAGCAGGCTATAATGCCGGTGAGATACTATTTGGG
1 CTTTCGAGCCTAGCAGGCTATAATGCCGGTGAAATACTAATTGGG
*
68634923 CTTTCGAGCCTAGCAGGCTATAATGTCGGTGAAATGA-TAATTGGG
1 CTTTCGAGCCTAGCAGGCTATAATGCCGGTGAAAT-ACTAATTGGG
* *
68634968 C-CTCGAGCCTAGCAGGC-AAAATGCCGGTGA
1 CTTTCGAGCCTAGCAGGCTATAATGCCGGTGA
68634998 TTTGAGAAAA
Statistics
Matches: 225, Mismatches: 23, Indels: 14
0.86 0.09 0.05
Matches are distributed among these distances:
43 11 0.05
44 22 0.10
45 186 0.83
46 6 0.03
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.27
Consensus pattern (45 bp):
CTTTCGAGCCTAGCAGGCTATAATGCCGGTGAAATACTAATTGGG
Found at i:68634970 original size:135 final size:135
Alignment explanation
Indices: 68634691--68634997 Score: 388
Period size: 135 Copynumber: 2.3 Consensus size: 135
68634681 CTGGTATTAT
* * *
68634691 ATTCGGGCCTTTGAGCCTAGCAGGCTATTATGCCGGTGAGACACTATTCGGGCCTTTGAGCCTAG
1 ATTCGGGCCTTTGAGCCTAGCAGGCTATGATGCCGGTGAAACACTATTCAGGCCTTTGAGCCTAG
* * * * *
68634756 CAGGCTATTATGCCGGTGAGACACTATTCGGGCCTTTGAGCCTAGTAGGCTGTTATGCCGGTGAG
66 CAGGCTATAATGCCGGTGAGACACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAA
*
68634821 ACATT
131 ACATA
* * * *
68634826 ATTCAGGCCTTTAAGCCTAGCAGGCTATGATGTCGGTGAAATACTATTCAGGCCTTTGAGCCTAG
1 ATTCGGGCCTTTGAGCCTAGCAGGCTATGATGCCGGTGAAACACTATTCAGGCCTTTGAGCCTAG
* * *
68634891 CAGGCTATAATGCCGGTGAGATACTATTTGGG-CTTTCGAGCCTAGCAGGCTATAATGTCGGTGA
66 CAGGCTATAATGCCGGTGAGACACTATTCGGGCCTTT-GAGCCTAGCAGGCTATAATGCCGGTGA
*
68634955 AATGATA
130 AA-CATA
* **
68634962 ATT-GGGCC-TCGAGCCTAGCAGGC-AAAATGCCGGTGA
1 ATTCGGGCCTTTGAGCCTAGCAGGCTATGATGCCGGTGA
68634998 TTTGAGAAAA
Statistics
Matches: 147, Mismatches: 23, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
133 10 0.07
134 17 0.12
135 115 0.78
136 5 0.03
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.27
Consensus pattern (135 bp):
ATTCGGGCCTTTGAGCCTAGCAGGCTATGATGCCGGTGAAACACTATTCAGGCCTTTGAGCCTAG
CAGGCTATAATGCCGGTGAGACACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAA
ACATA
Found at i:68643804 original size:17 final size:17
Alignment explanation
Indices: 68643782--68643817 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
68643772 TGAAGCTCAC
68643782 CTTTTGTCTGGTCAACA
1 CTTTTGTCTGGTCAACA
68643799 CTTTTGTCTGGTCAACA
1 CTTTTGTCTGGTCAACA
68643816 CT
1 CT
68643818 GCAGACTCCT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.17, C:0.25, G:0.17, T:0.42
Consensus pattern (17 bp):
CTTTTGTCTGGTCAACA
Found at i:68645412 original size:12 final size:12
Alignment explanation
Indices: 68645395--68645419 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
68645385 GAGAAGAAAG
68645395 CAGAGCCGGAGC
1 CAGAGCCGGAGC
68645407 CAGAGCCGGAGC
1 CAGAGCCGGAGC
68645419 C
1 C
68645420 GACATTTGAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.36, G:0.40, T:0.00
Consensus pattern (12 bp):
CAGAGCCGGAGC
Found at i:68653586 original size:12 final size:12
Alignment explanation
Indices: 68653569--68653608 Score: 53
Period size: 12 Copynumber: 3.2 Consensus size: 12
68653559 AAAAGAATAA
68653569 GAAATGAAATTG
1 GAAATGAAATTG
*
68653581 GAAATGAAAATG
1 GAAATGAAATTG
68653593 GAAAATGAAATGTG
1 G-AAATGAAAT-TG
68653607 GA
1 GA
68653609 TTTTGGATTG
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
12 12 0.50
13 9 0.38
14 3 0.12
ACGTcount: A:0.53, C:0.00, G:0.28, T:0.20
Consensus pattern (12 bp):
GAAATGAAATTG
Found at i:68661395 original size:17 final size:17
Alignment explanation
Indices: 68661375--68661429 Score: 51
Period size: 17 Copynumber: 3.3 Consensus size: 17
68661365 TTTGAAATGT
68661375 ATGTTGTTCTCATTCTC
1 ATGTTGTTCTCATTCTC
* * * *
68661392 ATGTT-ATGTGATATGT-
1 ATGTTGTTCTCAT-TCTC
68661408 ATGTTGTTCTCATTCTC
1 ATGTTGTTCTCATTCTC
68661425 ATGTT
1 ATGTT
68661430 ATGTGATATT
Statistics
Matches: 27, Mismatches: 8, Indels: 6
0.66 0.20 0.15
Matches are distributed among these distances:
16 11 0.41
17 16 0.59
ACGTcount: A:0.16, C:0.15, G:0.16, T:0.53
Consensus pattern (17 bp):
ATGTTGTTCTCATTCTC
Found at i:68661412 original size:33 final size:33
Alignment explanation
Indices: 68661371--68661442 Score: 137
Period size: 33 Copynumber: 2.2 Consensus size: 33
68661361 CTCATTTGAA
68661371 ATGTATGTTGTTCTCATTCTCATGTTATGTGAT
1 ATGTATGTTGTTCTCATTCTCATGTTATGTGAT
68661404 ATGTATGTTGTTCTCATTCTCATGTTATGTGAT
1 ATGTATGTTGTTCTCATTCTCATGTTATGTGAT
68661437 AT-TATG
1 ATGTATG
68661443 GCATAATTTA
Statistics
Matches: 39, Mismatches: 0, Indels: 1
0.98 0.00 0.03
Matches are distributed among these distances:
32 4 0.10
33 35 0.90
ACGTcount: A:0.19, C:0.11, G:0.18, T:0.51
Consensus pattern (33 bp):
ATGTATGTTGTTCTCATTCTCATGTTATGTGAT
Found at i:68661792 original size:40 final size:40
Alignment explanation
Indices: 68661703--68661806 Score: 120
Period size: 40 Copynumber: 2.6 Consensus size: 40
68661693 CCACAATACC
* * * *
68661703 GGTAGCTTGTCTGCGTTACTGGCAGTTTATCTGCAGTATT
1 GGTAGCTTGTCTGCATTACTGGAAGTTTATCTACAATATT
*
68661743 GGTAACTTGTCTGCATT-CTTGGAAGTTTATCTACAATATT
1 GGTAGCTTGTCTGCATTAC-TGGAAGTTTATCTACAATATT
* **
68661783 GGTGGCTTGTCCACATTACTGGAA
1 GGTAGCTTGTCTGCATTACTGGAA
68661807 ACTTGTCTTC
Statistics
Matches: 53, Mismatches: 9, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
39 1 0.02
40 51 0.96
41 1 0.02
ACGTcount: A:0.20, C:0.17, G:0.24, T:0.38
Consensus pattern (40 bp):
GGTAGCTTGTCTGCATTACTGGAAGTTTATCTACAATATT
Found at i:68662802 original size:15 final size:16
Alignment explanation
Indices: 68662782--68662817 Score: 58
Period size: 15 Copynumber: 2.4 Consensus size: 16
68662772 CATCTTCTAT
68662782 AACCATTC-GTGTCAA
1 AACCATTCTGTGTCAA
68662797 AACCA-TCTGTGTCAA
1 AACCATTCTGTGTCAA
68662812 AACCAT
1 AACCAT
68662818 CCGAACTTCT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
14 2 0.11
15 17 0.89
ACGTcount: A:0.36, C:0.28, G:0.11, T:0.25
Consensus pattern (16 bp):
AACCATTCTGTGTCAA
Found at i:68671754 original size:40 final size:40
Alignment explanation
Indices: 68671706--68671871 Score: 237
Period size: 40 Copynumber: 4.2 Consensus size: 40
68671696 GGACTAAGAT
68671706 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
* *
68671746 CCGAAGGCATTTGTGCTAGTTACTATATCCAGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
* *
68671786 CCGAAGGCATTTGTGCTAGTGATTATATCCGAGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
* * * *
68671826 TCGAAGACATTTGTGCGAGTTG-CTATATCC-GGCTAAATC
1 CCGAAGGCATTTGTGCTAG-TGACTATATCCGGGCTAAGTC
68671865 CCGAAGG
1 CCGAAGG
68671872 TACTTGGGTT
Statistics
Matches: 111, Mismatches: 14, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
39 12 0.11
40 97 0.87
41 2 0.02
ACGTcount: A:0.25, C:0.22, G:0.25, T:0.28
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
Found at i:68673845 original size:46 final size:47
Alignment explanation
Indices: 68673778--68674036 Score: 216
Period size: 46 Copynumber: 5.6 Consensus size: 47
68673768 TGTAACTTGC
*
68673778 CCATAAGTGAACTCGGACTCAACTCAATGAGCTCCG-GCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCCGAGCGTTCGCAT
* * *
68673824 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCCGA-G-C--GTTCGCAT
* * * * *
68673874 -C-TCA-CGAACTCAGACTCAACTCAACGAG-TTCGAGCATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCCGAGCGTTCGCAT
* *
68673917 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCCGA-G-C--GTTCGCAT
* * * * * *
68673967 -C-TCA-CGAACTCGGACTCAACTCAATGAG-TTCGGGCATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCCGAGCGTTCGCAT
68674010 CCATAAGTGAACTCGGACTCAACTCAA
1 CCATAAGTGAACTCGGACTCAACTCAA
68674037 TAAGTCCGGA
Statistics
Matches: 168, Mismatches: 27, Indels: 36
0.73 0.12 0.16
Matches are distributed among these distances:
42 4 0.02
43 6 0.04
44 4 0.02
45 6 0.04
46 79 0.47
47 48 0.29
48 6 0.04
49 4 0.02
50 6 0.04
51 5 0.03
ACGTcount: A:0.30, C:0.30, G:0.19, T:0.22
Consensus pattern (47 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCCGAGCGTTCGCAT
Found at i:68673895 original size:93 final size:92
Alignment explanation
Indices: 68673786--68674036 Score: 421
Period size: 93 Copynumber: 2.7 Consensus size: 92
68673776 GCCCATAAGT
* *
68673786 GAACTCGGACTCAACTCAATGAGCTCCGGCGTTCGCATCCATAAGTGAACTCAGACTCAACTCAA
1 GAACTCGGACTCAACTCAATGAG-TCCGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
68673851 CGAGCTCGGATGCCTAGTTACATCTCAC
65 CGAGCTCGGATGCCTAGTTACATCTCAC
* * *
68673879 GAACTCAGACTCAACTCAACGAGTTCGAGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAATGAGTCCG-GCATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
68673944 CGAGCTCGGATGCCTAGTTACATCTCAC
65 CGAGCTCGGATGCCTAGTTACATCTCAC
*
68673972 GAACTCGGACTCAACTCAATGAGTTCGGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAATGAG-TCCGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
68674037 TAAGTCCGGA
Statistics
Matches: 147, Mismatches: 9, Indels: 4
0.92 0.06 0.03
Matches are distributed among these distances:
92 3 0.02
93 142 0.97
94 2 0.01
ACGTcount: A:0.29, C:0.30, G:0.19, T:0.22
Consensus pattern (92 bp):
GAACTCGGACTCAACTCAATGAGTCCGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
GAGCTCGGATGCCTAGTTACATCTCAC
Found at i:68673896 original size:47 final size:47
Alignment explanation
Indices: 68673832--68673999 Score: 193
Period size: 47 Copynumber: 3.6 Consensus size: 47
68673822 ATCCATAAGT
68673832 GAACTCAGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCAC
1 GAACTCAGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCAC
* * * *
68673879 GAACTCAGACTCAACTCAACGAGTTC-GA-G-C-A-TTCGCATCCATAAGT
1 GAACTCAGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT-C-TCA-C
*
68673925 GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCAC
1 GAACTCAGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCAC
* * *
68673972 GAACTCGGACTCAACTCAATGAGTTCGG
1 GAACTCAGACTCAACTCAACGAGCTCGG
68674000 GCATTCGCAT
Statistics
Matches: 101, Mismatches: 11, Indels: 18
0.78 0.08 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 3 0.03
46 26 0.26
47 53 0.52
48 3 0.03
49 2 0.02
50 4 0.04
51 2 0.02
ACGTcount: A:0.30, C:0.30, G:0.19, T:0.21
Consensus pattern (47 bp):
GAACTCAGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCAC
Found at i:68678922 original size:29 final size:28
Alignment explanation
Indices: 68678886--68678963 Score: 104
Period size: 29 Copynumber: 2.7 Consensus size: 28
68678876 TCATGAGATT
68678886 GGCACTAAGTGTGCGGGTTTAAATTGTACA
1 GGCACTAAGTGTGCGGGTTTAAA--GTACA
*
68678916 -GCACTAAGTGTGCGAGTTTAAAGTACA
1 GGCACTAAGTGTGCGGGTTTAAAGTACA
68678943 TGGCACTAAGTGTGCGCGGTT
1 -GGCACTAAGTGTGCG-GGTT
68678964 GAATATTAAG
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
27 5 0.12
29 35 0.81
30 3 0.07
ACGTcount: A:0.26, C:0.15, G:0.31, T:0.28
Consensus pattern (28 bp):
GGCACTAAGTGTGCGGGTTTAAAGTACA
Found at i:68679228 original size:173 final size:174
Alignment explanation
Indices: 68678916--68679242 Score: 557
Period size: 173 Copynumber: 1.9 Consensus size: 174
68678906 AAATTGTACA
* *
68678916 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGAATATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGAATACTAAACACTATG
* *
68678981 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
68679046 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGTATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGTATG
* * * * *
68679090 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGTGGTTGATTACTAAACATTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGAATACTAAACACTATG
*
68679155 TGTGC-AACCCAGTATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
68679219 TTTTGGACAGCGGAAAAGGTAAGT
131 TTTTGGACAGCGGAAAAGGTAAGT
68679243 ACCTTGAGTT
Statistics
Matches: 143, Mismatches: 10, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
173 80 0.56
174 63 0.44
ACGTcount: A:0.30, C:0.14, G:0.24, T:0.31
Consensus pattern (174 bp):
GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGAATACTAAACACTATG
TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGTATG
Found at i:68687234 original size:28 final size:28
Alignment explanation
Indices: 68687194--68687347 Score: 265
Period size: 28 Copynumber: 5.5 Consensus size: 28
68687184 TAAATTGTAC
*
68687194 AGCACTAACTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
68687222 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
68687250 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
*
68687278 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
*
68687306 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
*
68687333 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
68687348 GACTTAATAT
Statistics
Matches: 123, Mismatches: 3, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
27 24 0.20
28 99 0.80
ACGTcount: A:0.26, C:0.12, G:0.28, T:0.34
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATTATGT
Found at i:68687361 original size:56 final size:56
Alignment explanation
Indices: 68687169--68687347 Score: 270
Period size: 56 Copynumber: 3.2 Consensus size: 56
68687159 GGGATTGGCG
* * * * *
68687169 CTAAGTGTGCGGGTTTAAATTGTACAGCACTAACTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTT-GATTATATAGCACTAAGTGTGCGAGTTTGATTATGTAGCA
*
68687226 CTAAGTGTGCGAGTTTGATTATGTAGCACTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCACTAAGTGTGCGAGTTTGATTATGTAGCA
*
68687282 CTAAGTGTGCGAGTTTGATTATATAGCACTAAGTGTGCGAG-TTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCACTAAGTGTGCGAGTTTGATTATGTAGCA
*
68687337 CTGAGTGTGCG
1 CTAAGTGTGCG
68687348 GACTTAATAT
Statistics
Matches: 113, Mismatches: 9, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
55 23 0.20
56 75 0.66
57 15 0.13
ACGTcount: A:0.26, C:0.12, G:0.28, T:0.34
Consensus pattern (56 bp):
CTAAGTGTGCGAGTTTGATTATATAGCACTAAGTGTGCGAGTTTGATTATGTAGCA
Found at i:68692685 original size:46 final size:46
Alignment explanation
Indices: 68692618--68692789 Score: 208
Period size: 46 Copynumber: 3.7 Consensus size: 46
68692608 AACCCGCCCC
*
68692618 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
*
68692664 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACA-CC-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCATCCA
* * * *
68692712 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
*
68692757 TAGGTGAACTCGGACTCAACTCAACGAGTTCGG
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG
68692790 ATGCTCAACC
Statistics
Matches: 107, Mismatches: 10, Indels: 18
0.79 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 2 0.02
44 3 0.03
45 1 0.01
46 60 0.56
47 28 0.26
48 3 0.03
49 3 0.03
50 2 0.02
51 3 0.03
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
Found at i:68692730 original size:93 final size:93
Alignment explanation
Indices: 68692623--68692793 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
68692613 GCCCCTAAGT
* *
68692623 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
68692688 CGAGTTCGGATGCCTAGTTACACCTCAC
66 CGAGTTCGGATGCCTAGTTACACCTCAC
* *
68692716 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAGGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
68692781 CGAGTTCGGATGC
66 CGAGTTCGGATGC
68692794 TCAACCATCC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACACCTCAC
Found at i:68693247 original size:30 final size:30
Alignment explanation
Indices: 68693213--68693272 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
68693203 ATTTAATACG
68693213 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
68693243 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
68693273 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:68699843 original size:15 final size:15
Alignment explanation
Indices: 68699819--68699848 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
68699809 AATCACTGTT
68699819 GAAGAAAAAGAAAAA
1 GAAGAAAAAGAAAAA
*
68699834 GAAGATAAAGAAAAA
1 GAAGAAAAAGAAAAA
68699849 TTAGGGAAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.77, C:0.00, G:0.20, T:0.03
Consensus pattern (15 bp):
GAAGAAAAAGAAAAA
Found at i:68699975 original size:18 final size:17
Alignment explanation
Indices: 68699936--68700019 Score: 80
Period size: 18 Copynumber: 4.6 Consensus size: 17
68699926 AATGAGCATA
*
68699936 TTAATTTTTAAAGTTTTAT
1 TTAATTTTT-AA-TTTTTT
68699955 TTAATTTTTAATTTATTT
1 TTAATTTTTAATTT-TTT
*
68699973 TTATTTTTTGAATTTTTT
1 TTAATTTTT-AATTTTTT
*
68699991 TTAAATTTT-ATGTTTTT
1 TTAATTTTTAAT-TTTTT
68700008 TTAATTTATTAA
1 TTAATTT-TTAA
68700020 AACTTTTTCC
Statistics
Matches: 55, Mismatches: 5, Indels: 10
0.79 0.07 0.14
Matches are distributed among these distances:
16 2 0.04
17 14 0.25
18 24 0.44
19 15 0.27
ACGTcount: A:0.27, C:0.00, G:0.04, T:0.69
Consensus pattern (17 bp):
TTAATTTTTAATTTTTT
Found at i:68700027 original size:46 final size:48
Alignment explanation
Indices: 68699940--68700038 Score: 114
Period size: 47 Copynumber: 2.1 Consensus size: 48
68699930 AGCATATTAA
*** **
68699940 TTTTTAAAGTTTTATTTAATTTTTAATTTATTTTTA-TTTTTTGAATTT
1 TTTTTAAAGTTTTATTT-ATTTTTAATTTATTAAAACTTTTTCCAATTT
68699988 TTTTTAAA-TTTTATGTT-TTTTTAATTTATTAAAACTTTTTCCAATTT
1 TTTTTAAAGTTTTAT-TTATTTTTAATTTATTAAAACTTTTTCCAATTT
68700035 TTTT
1 TTTT
68700039 AAAAAGTTAT
Statistics
Matches: 44, Mismatches: 5, Indels: 5
0.81 0.09 0.09
Matches are distributed among these distances:
46 14 0.32
47 20 0.45
48 10 0.23
ACGTcount: A:0.25, C:0.03, G:0.03, T:0.69
Consensus pattern (48 bp):
TTTTTAAAGTTTTATTTATTTTTAATTTATTAAAACTTTTTCCAATTT
Found at i:68711638 original size:47 final size:47
Alignment explanation
Indices: 68711459--68711676 Score: 162
Period size: 47 Copynumber: 4.6 Consensus size: 47
68711449 TATGAGAGCT
* ** ** *
68711459 AGTGTAAGATGATGTCTGGGACATGGCATCGGCATTGAGATGA-GGGTT
1 AGTGTAAGA-CATGTCTGGGACATGGCATCAAC-TTGAGATGATAAGTC
* * ** * *
68711507 AGTGTAAGACATGTCTGAGACAT-GCAACGGCTTCGAGA-CATAAGCC
1 AGTGTAAGACATGTCTGGGACATGGCATCAACTT-GAGATGATAAGTC
*
68711553 AGTGTAAGACATGTCTGGGACAT-GCATCAACTACGAGATGAT-AGTC
1 AGTGTAAGACATGTCTGGGACATGGCATCAACT-TGAGATGATAAGTC
* *
68711599 AGTGTAAGTCCATGTCTGGGACATGGCATCAACTTGAGAT-ATGAG-C
1 AGTGTAAG-ACATGTCTGGGACATGGCATCAACTTGAGATGATAAGTC
* * *
68711645 TAGTATAAGACCGTGTCTAGGACATGGCATCA
1 -AGTGTAAGA-CATGTCTGGGACATGGCATCA
68711677 GTACCTTACC
Statistics
Matches: 140, Mismatches: 21, Indels: 19
0.78 0.12 0.11
Matches are distributed among these distances:
45 3 0.02
46 58 0.41
47 61 0.44
48 18 0.13
ACGTcount: A:0.30, C:0.17, G:0.29, T:0.24
Consensus pattern (47 bp):
AGTGTAAGACATGTCTGGGACATGGCATCAACTTGAGATGATAAGTC
Found at i:68714860 original size:11 final size:10
Alignment explanation
Indices: 68714834--68714867 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
68714824 GGGGAGCACC
*
68714834 AAGAGTCAAA
1 AAGAGCCAAA
68714844 AAGAGCCAAA
1 AAGAGCCAAA
68714854 AACGAGCCAAA
1 AA-GAGCCAAA
68714865 AAG
1 AAG
68714868 GGACAAAATG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
10 12 0.55
11 10 0.45
ACGTcount: A:0.59, C:0.18, G:0.21, T:0.03
Consensus pattern (10 bp):
AAGAGCCAAA
Found at i:68718028 original size:70 final size:70
Alignment explanation
Indices: 68717949--68718089 Score: 282
Period size: 70 Copynumber: 2.0 Consensus size: 70
68717939 CTGGCTAATA
68717949 AAAGAAAGTTAGATGCTACATCGCATATGGAACTCAATGCAGTCTGCTCAGCTATTCTGAAGAAT
1 AAAGAAAGTTAGATGCTACATCGCATATGGAACTCAATGCAGTCTGCTCAGCTATTCTGAAGAAT
68718014 AAGCT
66 AAGCT
68718019 AAAGAAAGTTAGATGCTACATCGCATATGGAACTCAATGCAGTCTGCTCAGCTATTCTGAAGAAT
1 AAAGAAAGTTAGATGCTACATCGCATATGGAACTCAATGCAGTCTGCTCAGCTATTCTGAAGAAT
68718084 AAGCT
66 AAGCT
68718089 A
1 A
68718090 CCTAACAAAT
Statistics
Matches: 71, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
70 71 1.00
ACGTcount: A:0.36, C:0.18, G:0.20, T:0.26
Consensus pattern (70 bp):
AAAGAAAGTTAGATGCTACATCGCATATGGAACTCAATGCAGTCTGCTCAGCTATTCTGAAGAAT
AAGCT
Found at i:68733971 original size:25 final size:25
Alignment explanation
Indices: 68733942--68733989 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
68733932 TTATTACATG
* *
68733942 AAAATGACCATTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
68733967 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
68733990 GTTTATATAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.35, C:0.25, G:0.15, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:68734055 original size:20 final size:20
Alignment explanation
Indices: 68734026--68734072 Score: 85
Period size: 20 Copynumber: 2.4 Consensus size: 20
68734016 ATTTTGATAA
*
68734026 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
68734046 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
68734066 ACATGAT
1 ACATGAT
68734073 GTATTCATAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.34, C:0.11, G:0.21, T:0.34
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:68734148 original size:24 final size:24
Alignment explanation
Indices: 68734121--68734261 Score: 212
Period size: 24 Copynumber: 5.9 Consensus size: 24
68734111 GGATGAAGTG
68734121 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
68734145 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
*
68734169 CGAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
*
68734193 AAAAAGGGCTTATGCCCCAGTTA-
1 CAAAAGGGCTTATGCCCCAGTTAT
*
68734216 CTAAAAGGGCTTTTGCCCCAGTTAT
1 C-AAAAGGGCTTATGCCCCAGTTAT
* * *
68734241 TAAAAGGGCTTTTTCCCCAGT
1 CAAAAGGGCTTATGCCCCAGT
68734262 AATATAAAGA
Statistics
Matches: 108, Mismatches: 7, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
24 108 1.00
ACGTcount: A:0.28, C:0.24, G:0.21, T:0.27
Consensus pattern (24 bp):
CAAAAGGGCTTATGCCCCAGTTAT
Found at i:68734270 original size:24 final size:23
Alignment explanation
Indices: 68734122--68734290 Score: 205
Period size: 24 Copynumber: 7.0 Consensus size: 23
68734112 GATGAAGTGC
68734122 AAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
68734145 CAAAAGGGCTTATGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
*
68734169 CGAAAGGGCTTATGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
68734193 AAAAAGGGCTTATGCCCCAGTTACT
1 -AAAAGGGCTTATGCCCCAGTTA-T
*
68734218 AAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTA-T
* * *
68734242 AAAAGGGCTTTTTCCCCAGTAAT
1 AAAAGGGCTTATGCCCCAGTTAT
*
68734265 ATAAAGAGGC-TAGGCCTCCAGTTAT
1 A-AAAG-GGCTTATGCC-CCAGTTAT
68734290 A
1 A
68734291 TGATAAAGCA
Statistics
Matches: 130, Mismatches: 11, Indels: 7
0.88 0.07 0.05
Matches are distributed among these distances:
23 2 0.02
24 116 0.89
25 12 0.09
ACGTcount: A:0.30, C:0.22, G:0.21, T:0.27
Consensus pattern (23 bp):
AAAAGGGCTTATGCCCCAGTTAT
Done.