Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100714657
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 3970000 characters in sequence are not A, C, G, or T
File 217 of 318
Found at i:68742590 original size:40 final size:39
Alignment explanation
Indices: 68742536--68742619 Score: 105
Period size: 40 Copynumber: 2.1 Consensus size: 39
68742526 TAACGGCTTA
* **
68742536 TCGGCTAAAATGGCACTTAGTGTGCGGTTCGAAATAGCT
1 TCGGCCAAAATGGCACTTAGTGTGCAATTCGAAATAGCT
* * *
68742575 TCGGCCAAAAGTGGCACTTGGTGTGCAATTTGAGATAGCT
1 TCGGCCAAAA-TGGCACTTAGTGTGCAATTCGAAATAGCT
68742615 TCGGC
1 TCGGC
68742620 TATATTTATA
Statistics
Matches: 38, Mismatches: 6, Indels: 1
0.84 0.13 0.02
Matches are distributed among these distances:
39 9 0.24
40 29 0.76
ACGTcount: A:0.24, C:0.19, G:0.30, T:0.27
Consensus pattern (39 bp):
TCGGCCAAAATGGCACTTAGTGTGCAATTCGAAATAGCT
Found at i:68748541 original size:42 final size:42
Alignment explanation
Indices: 68748443--68748523 Score: 153
Period size: 42 Copynumber: 1.9 Consensus size: 42
68748433 TTTACGTGCA
*
68748443 AGGGCAGACTGTGTGTCACACATGGCTTAGACACACGCCCGT
1 AGGGCAGACCGTGTGTCACACATGGCTTAGACACACGCCCGT
68748485 AGGGCAGACCGTGTGTCACACATGGCTTAGACACACGCC
1 AGGGCAGACCGTGTGTCACACATGGCTTAGACACACGCC
68748524 TGTGTGTCTA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
42 38 1.00
ACGTcount: A:0.25, C:0.30, G:0.28, T:0.17
Consensus pattern (42 bp):
AGGGCAGACCGTGTGTCACACATGGCTTAGACACACGCCCGT
Found at i:68749350 original size:45 final size:45
Alignment explanation
Indices: 68749291--68749412 Score: 149
Period size: 46 Copynumber: 2.7 Consensus size: 45
68749281 TATATTTGTA
* *
68749291 CCGATGCCATGTCCCAGACATGGTCTTACAGTGAC-ACATCTTGTA-G
1 CCGATG-CATGTCCCAGACAT-GTCTTACACTGACTACATCTCG-AGG
** *
68749337 TTGATGCATGTCCCAGACATGTCTTACACTGGCTTACATCTCGAGG
1 CCGATGCATGTCCCAGACATGTCTTACACTGAC-TACATCTCGAGG
68749383 CCGATGCATGTCCCAGACATGTCTTACACT
1 CCGATGCATGTCCCAGACATGTCTTACACT
68749413 AGCTCTCGTT
Statistics
Matches: 66, Mismatches: 7, Indels: 6
0.84 0.09 0.08
Matches are distributed among these distances:
44 11 0.17
45 15 0.23
46 40 0.61
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (45 bp):
CCGATGCATGTCCCAGACATGTCTTACACTGACTACATCTCGAGG
Found at i:68754815 original size:40 final size:40
Alignment explanation
Indices: 68754741--68754960 Score: 293
Period size: 40 Copynumber: 5.5 Consensus size: 40
68754731 AAGTATCTTT
* *
68754741 GGGATTTAG-CCGGATATAG-CAACTCGCACAAATGCCTTC
1 GGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGCCTTC
* **
68754780 GGGTCTTAGCCCGGATATAGTCACTAGCATGAATGCCTTC
1 GGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTC
68754820 GGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTC
1 GGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTC
* *
68754860 GGGACTTAGCCCGGGTATAG-CAAATACTCGCACAAATGCCTTC
1 GGGACTTAGCCCGGATATAGTC----ACTAGCACAAATGCCTTC
* *
68754903 GGGACTTAGCCCGGATATAGTAACTTGCACAAATGCCTTC
1 GGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTC
68754943 GGGACTTAGCCCGGATAT
1 GGGACTTAGCCCGGATAT
68754961 CATCCGAATA
Statistics
Matches: 161, Mismatches: 13, Indels: 13
0.86 0.07 0.07
Matches are distributed among these distances:
39 8 0.05
40 116 0.72
41 1 0.01
43 36 0.22
ACGTcount: A:0.26, C:0.26, G:0.24, T:0.24
Consensus pattern (40 bp):
GGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTC
Found at i:68754933 original size:83 final size:80
Alignment explanation
Indices: 68754741--68754960 Score: 300
Period size: 83 Copynumber: 2.7 Consensus size: 80
68754731 AAGTATCTTT
* * * *
68754741 GGGATTTAG-CCGGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGTCACT
1 GGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTCACT
**
68754805 AGCATGAATGCCTTC
66 AGCACAAATGCCTTC
* *
68754820 GGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGGTATAG-CAAA
1 GGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTC---
*
68754884 TACTCGCACAAATGCCTTC
63 -ACTAGCACAAATGCCTTC
*
68754903 GGGACTTAGCCCGGATATAGTAACTTGCACAAATGCCTTCGGGACTTAGCCCGGATAT
1 GGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATAT
68754961 CATCCGAATA
Statistics
Matches: 124, Mismatches: 12, Indels: 6
0.87 0.08 0.04
Matches are distributed among these distances:
79 9 0.07
80 45 0.36
83 70 0.56
ACGTcount: A:0.26, C:0.26, G:0.24, T:0.24
Consensus pattern (80 bp):
GGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTCACT
AGCACAAATGCCTTC
Found at i:68763037 original size:40 final size:40
Alignment explanation
Indices: 68762959--68763142 Score: 230
Period size: 40 Copynumber: 4.5 Consensus size: 40
68762949 ACCCAAGTAT
* *
68762959 CTTCGGGATTTAG-CCGGATATAGCAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGC
* **
68762998 CTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCATGAATGC
1 CTTCGGGACTTAGCCCGGATATAG-CAACTAGCACAAATGC
*
68763038 CTTTGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAG-CAACTAGCACAAATGC
*
68763078 CTTCGGGACTTAGCCCGGGTATAGCAACTACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGCAACTA---GCACAAATGC
*
68763121 CTTCGGGACTTAGCTCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
68763143 CATCCGAATA
Statistics
Matches: 126, Mismatches: 13, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
39 12 0.10
40 83 0.66
41 1 0.01
43 30 0.24
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGC
Found at i:68781996 original size:5 final size:5
Alignment explanation
Indices: 68781986--68782011 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
68781976 GATACCAACC
68781986 ATAAA ATAAA ATAAA ATAAA ATAAA A
1 ATAAA ATAAA ATAAA ATAAA ATAAA A
68782012 CTTTTGGCTC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
ATAAA
Found at i:68786117 original size:20 final size:20
Alignment explanation
Indices: 68786094--68786197 Score: 61
Period size: 20 Copynumber: 5.2 Consensus size: 20
68786084 AGGGGTGCCA
68786094 AAGTACAAACAGGGGCACGT
1 AAGTACAAACAGGGGCACGT
* * * *
68786114 AAGTGCAATCAGGGGTAC-C
1 AAGTACAAACAGGGGCACGT
* *
68786133 AGAGTACAAACAAGGGCATGT
1 A-AGTACAAACAGGGGCACGT
** *
68786154 AAGTGTAATA-AGGGGTATCG-
1 AAGTACAA-ACAGGGGCA-CGT
* *
68786174 AATTACAAATAGGGGCACGT
1 AAGTACAAACAGGGGCACGT
68786194 AAGT
1 AAGT
68786198 GCAATCATTC
Statistics
Matches: 58, Mismatches: 20, Indels: 12
0.64 0.22 0.13
Matches are distributed among these distances:
19 4 0.07
20 51 0.88
21 3 0.05
ACGTcount: A:0.38, C:0.14, G:0.30, T:0.17
Consensus pattern (20 bp):
AAGTACAAACAGGGGCACGT
Found at i:68786118 original size:40 final size:40
Alignment explanation
Indices: 68786074--68786198 Score: 151
Period size: 40 Copynumber: 3.1 Consensus size: 40
68786064 CAGGGCACCA
* *
68786074 AAGTGTAATTAGGGGTGCCAAAGTACAAACAGGGGCACGT
1 AAGTGTAATAAGGGGTACCAAAGTACAAACAGGGGCACGT
* * * * *
68786114 AAGTGCAATCAGGGGTACCAGAGTACAAACAAGGGCATGT
1 AAGTGTAATAAGGGGTACCAAAGTACAAACAGGGGCACGT
* * * *
68786154 AAGTGTAATAAGGGGTATCGAATTACAAATAGGGGCACGT
1 AAGTGTAATAAGGGGTACCAAAGTACAAACAGGGGCACGT
68786194 AAGTG
1 AAGTG
68786199 CAATCATTCA
Statistics
Matches: 70, Mismatches: 15, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
40 70 1.00
ACGTcount: A:0.37, C:0.14, G:0.31, T:0.18
Consensus pattern (40 bp):
AAGTGTAATAAGGGGTACCAAAGTACAAACAGGGGCACGT
Found at i:68787784 original size:33 final size:33
Alignment explanation
Indices: 68787703--68787787 Score: 84
Period size: 33 Copynumber: 2.6 Consensus size: 33
68787693 ATAGAGTCAT
* * *
68787703 TCTGCAGGGACAATAAACATGGAATAGAGTAAG
1 TCTGCTGGGACAGTAAACATGGAACAGAGTAAG
** *
68787736 T-TTTTCGGGATAGTAAACATGGAACAGAG-ATAG
1 TCTGCT-GGGACAGTAAACATGGAACAGAGTA-AG
68787769 TCTGCTGGGACAGTAAACA
1 TCTGCTGGGACAGTAAACA
68787788 CAGACCAGGT
Statistics
Matches: 40, Mismatches: 9, Indels: 6
0.73 0.16 0.11
Matches are distributed among these distances:
32 2 0.05
33 36 0.90
34 2 0.05
ACGTcount: A:0.38, C:0.13, G:0.27, T:0.22
Consensus pattern (33 bp):
TCTGCTGGGACAGTAAACATGGAACAGAGTAAG
Found at i:68788421 original size:34 final size:33
Alignment explanation
Indices: 68788383--68788475 Score: 105
Period size: 34 Copynumber: 2.8 Consensus size: 33
68788373 TCTAGGCTTA
* *
68788383 AGCCCTTTTCAGTGGCAATATCAGTGTGGGCCTT
1 AGCCCATTTCAGT-ACAATATCAGTGTGGGCCTT
** * *
68788417 AGCCCATCACAATAACAGTATCAGTGTGGGCCTT
1 AGCCCATTTCAGT-ACAATATCAGTGTGGGCCTT
*
68788451 AGCCCAATTCAGTACAATATCAGTG
1 AGCCCATTTCAGTACAATATCAGTG
68788476 ATGCATACAG
Statistics
Matches: 47, Mismatches: 12, Indels: 1
0.78 0.20 0.02
Matches are distributed among these distances:
33 11 0.23
34 36 0.77
ACGTcount: A:0.27, C:0.25, G:0.22, T:0.27
Consensus pattern (33 bp):
AGCCCATTTCAGTACAATATCAGTGTGGGCCTT
Found at i:68802467 original size:39 final size:39
Alignment explanation
Indices: 68802367--68802590 Score: 238
Period size: 39 Copynumber: 5.6 Consensus size: 39
68802357 TTGAATGATG
* * *
68802367 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAGGTGAC-CAT
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGAT-ACTAAT
* *
68802406 ATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
*
68802447 TTCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
* *
68802486 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
* * *
68802525 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACT-AT
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
* * *
68802564 AACCGGGCTATGTCCCGAAGGCGTTTG
1 -TCCGGGCTAAG-CCCGAAGGCATTTG
68802591 AACGAGTAGC
Statistics
Matches: 160, Mismatches: 20, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
39 74 0.46
40 74 0.46
41 12 0.08
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.25
Consensus pattern (39 bp):
TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:68802542 original size:79 final size:80
Alignment explanation
Indices: 68802367--68802590 Score: 267
Period size: 79 Copynumber: 2.8 Consensus size: 80
68802357 TTGAATGATG
* * * * *
68802367 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAGGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGAT-ACTATATCCGGGCTAAGACCCGAAGGCATT
*
68802431 TGTGCGAGATACTAAT
65 TGTGCGAGATACTAAA
*
68802447 TTCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTA-ATTCCGGGCTAAG-CCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTATA-TCCGGGCTAAGACCCGAAGGCATT
*
68802509 TGTGCGAGTTACTAAA
65 TGTGCGAGATACTAAA
* * * * * * *
68802525 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCGTTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTATATCCGGGCTAAGACCCGAAGGCATTT
68802590 G
66 G
68802591 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 15, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
78 35 0.28
79 55 0.44
80 34 0.27
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.25
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTATATCCGGGCTAAGACCCGAAGGCATTT
GTGCGAGATACTAAA
Found at i:68802597 original size:40 final size:40
Alignment explanation
Indices: 68802367--68802590 Score: 260
Period size: 40 Copynumber: 5.7 Consensus size: 40
68802357 TTGAATGATG
* * * *
68802367 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAGGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGA-GTTACTAAA
* * *
68802407 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
68802447 TTCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
68802486 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
68802525 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
68802566 -CCGGGCTATGTCCCGAAGGCGTTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
68802591 AACGAGTAGC
Statistics
Matches: 161, Mismatches: 18, Indels: 10
0.85 0.10 0.05
Matches are distributed among these distances:
39 73 0.45
40 77 0.48
41 11 0.07
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:68802612 original size:79 final size:79
Alignment explanation
Indices: 68802367--68802623 Score: 211
Period size: 79 Copynumber: 3.3 Consensus size: 79
68802357 TTGAATGATG
* * * * * * *
68802367 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAGGTGAC-CATATCCGGACTAAGATCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGAT-ACTAATA-CCGGGCTAAG-CCCGAAGGCAT
** * *
68802430 TTGTGCGAGATACTAAT
63 TTGAACGAGTTACTAAA
* * * *
68802447 TTCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTG
**
68802511 TGCGAGTTACTAAA
66 AACGAGTTACTAAA
* * *
68802525 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCGTT
1 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATT
*
68802589 TGAACGAG-TAGCTATA
64 TGAACGAGTTA-CTAAA
* *
68802605 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
68802624 TACGTGATTT
Statistics
Matches: 150, Mismatches: 21, Indels: 13
0.82 0.11 0.07
Matches are distributed among these distances:
78 36 0.24
79 68 0.45
80 46 0.31
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTG
AACGAGTTACTAAA
Found at i:68810475 original size:39 final size:40
Alignment explanation
Indices: 68810374--68810558 Score: 191
Period size: 40 Copynumber: 4.7 Consensus size: 40
68810364 TTGAATGATG
* * * *
68810374 TCCGGGCTAAGTCCCGAAAGC-TTTGTGCTAAGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
* *
68810413 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
*
68810454 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
68810493 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* * *
68810532 AACCGGGCTATGTCCCGAAGGCGTTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
68810559 AATGAGTAGC
Statistics
Matches: 122, Mismatches: 17, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
39 36 0.30
40 76 0.62
41 10 0.08
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:68810511 original size:79 final size:80
Alignment explanation
Indices: 68810374--68810558 Score: 207
Period size: 79 Copynumber: 2.3 Consensus size: 80
68810364 TTGAATGATG
* * *
68810374 TCCGGGCTAAGTCCCGAAAGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAATT
68810439 GTGCGAGATACTA-A
66 GTGCGAGATACTATA
* * * **
68810453 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
68810515 ATTGTGCGAGTTACTATA
63 ATTGTGCGAGATACTATA
* *
68810533 ACCGGGCTATGTCCCGAAGGCGTTTG
1 TCCGGGCTAAGTCCCGAAGGC-TTTG
68810559 AATGAGTAGC
Statistics
Matches: 89, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
78 1 0.01
79 56 0.63
80 32 0.36
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAATT
GTGCGAGATACTATA
Found at i:68810580 original size:79 final size:79
Alignment explanation
Indices: 68810427--68810581 Score: 181
Period size: 79 Copynumber: 2.0 Consensus size: 79
68810417 GGACTAAGAT
* * **
68810427 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
68810492 ATCCGGGTTAAGTC
66 ATCCGGGTTAAGTC
* * * *
68810506 CCGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCGTTTGAATGAG-TAGC
1 CCGAAGGCAATTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
*
68810569 TATATCC-GGTTAA
63 TAAATCCGGGTTAA
68810582 ATTCCGAATG
Statistics
Matches: 64, Mismatches: 9, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
78 2 0.03
79 39 0.61
80 23 0.36
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.26
Consensus pattern (79 bp):
CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAGTC
Found at i:68818256 original size:28 final size:29
Alignment explanation
Indices: 68818224--68818280 Score: 89
Period size: 28 Copynumber: 2.0 Consensus size: 29
68818214 CATACATGCC
*
68818224 TATGGCCCACTAGGCCC-AATCTCATTCA
1 TATGGCCCACTAGGCCCAAATCACATTCA
*
68818252 TATGGCCCATTAGGCCCAAATCACATTCA
1 TATGGCCCACTAGGCCCAAATCACATTCA
68818281 CAGTCATGCT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
28 16 0.62
29 10 0.38
ACGTcount: A:0.28, C:0.33, G:0.14, T:0.25
Consensus pattern (29 bp):
TATGGCCCACTAGGCCCAAATCACATTCA
Found at i:68818536 original size:15 final size:16
Alignment explanation
Indices: 68818494--68818537 Score: 54
Period size: 16 Copynumber: 2.8 Consensus size: 16
68818484 CGTAGACAAA
68818494 ATTTTAGCTTTTCGAC
1 ATTTTAGCTTTTCGAC
* *
68818510 ATTTCAGCTTTTTG-C
1 ATTTTAGCTTTTCGAC
*
68818525 ATTTTAGTTTTTC
1 ATTTTAGCTTTTC
68818538 AGGATTTGCC
Statistics
Matches: 23, Mismatches: 5, Indels: 1
0.79 0.17 0.03
Matches are distributed among these distances:
15 11 0.48
16 12 0.52
ACGTcount: A:0.16, C:0.16, G:0.11, T:0.57
Consensus pattern (16 bp):
ATTTTAGCTTTTCGAC
Found at i:68825327 original size:43 final size:42
Alignment explanation
Indices: 68825184--68825350 Score: 151
Period size: 43 Copynumber: 3.9 Consensus size: 42
68825174 GGTTATCTAG
* *
68825184 ATGTGATTACATGTAAGACCATGTCTAGGACATTGG-ACTTGT
1 ATGTGATTACATGTAAGACCATATCTAGGACATTGGCA-TCGT
* * * *
68825226 ATTGAGATTACGTGTAAGACCATGTCTGGGACATTGGCATCGT
1 A-TGTGATTACATGTAAGACCATATCTAGGACATTGGCATCGT
** * *
68825269 -TAGTTGATTTTATGTAAGACCCTATCTAGGACAGTGGCATCGAT
1 AT-G-TGATTACATGTAAGACCATATCTAGGACATTGGCATCG-T
* * *
68825313 ATGTGATAACATGTAAGACCATATTTAGGATA-TGGCAT
1 ATGTGATTACATGTAAGACCATATCTAGGACATTGGCAT
68825351 TGTACGAGCT
Statistics
Matches: 101, Mismatches: 18, Indels: 12
0.77 0.14 0.09
Matches are distributed among these distances:
41 1 0.01
42 8 0.08
43 88 0.87
44 3 0.03
45 1 0.01
ACGTcount: A:0.29, C:0.14, G:0.24, T:0.32
Consensus pattern (42 bp):
ATGTGATTACATGTAAGACCATATCTAGGACATTGGCATCGT
Found at i:68848913 original size:39 final size:39
Alignment explanation
Indices: 68848859--68848960 Score: 186
Period size: 39 Copynumber: 2.6 Consensus size: 39
68848849 TTACCAGCGA
* *
68848859 GACTTTAGCCCGGATACATTTCCAGCACGAAGCCTGTGG
1 GACTTTAGCCCGGATACATTTCCAACAAGAAGCCTGTGG
68848898 GACTTTAGCCCGGATACATTTCCAACAAGAAGCCTGTGG
1 GACTTTAGCCCGGATACATTTCCAACAAGAAGCCTGTGG
68848937 GACTTTAGCCCGGATACATTTCCA
1 GACTTTAGCCCGGATACATTTCCA
68848961 CTGTCTTGAA
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 61 1.00
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (39 bp):
GACTTTAGCCCGGATACATTTCCAACAAGAAGCCTGTGG
Found at i:68851465 original size:53 final size:53
Alignment explanation
Indices: 68851385--68851488 Score: 208
Period size: 53 Copynumber: 2.0 Consensus size: 53
68851375 GATTTTCGTC
68851385 CCCGAAAATCTTACCGGTGAATAGGTTAGGGTGACGTTCTCTCATTGAGTTCT
1 CCCGAAAATCTTACCGGTGAATAGGTTAGGGTGACGTTCTCTCATTGAGTTCT
68851438 CCCGAAAATCTTACCGGTGAATAGGTTAGGGTGACGTTCTCTCATTGAGTT
1 CCCGAAAATCTTACCGGTGAATAGGTTAGGGTGACGTTCTCTCATTGAGTT
68851489 TTCTAGATCC
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
53 51 1.00
ACGTcount: A:0.23, C:0.20, G:0.25, T:0.32
Consensus pattern (53 bp):
CCCGAAAATCTTACCGGTGAATAGGTTAGGGTGACGTTCTCTCATTGAGTTCT
Found at i:68852156 original size:30 final size:28
Alignment explanation
Indices: 68852096--68852163 Score: 109
Period size: 28 Copynumber: 2.4 Consensus size: 28
68852086 ATCGATCTCG
*
68852096 CACACACAGTGCTCGGTTACAGAACTCA
1 CACACACAGTGCTCAGTTACAGAACTCA
* *
68852124 CACACACAGTGCTCAGTTACGGAACTCG
1 CACACACAGTGCTCAGTTACAGAACTCA
68852152 CACACACAGTGC
1 CACACACAGTGC
68852164 CTATGTTCAC
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
28 37 1.00
ACGTcount: A:0.31, C:0.34, G:0.19, T:0.16
Consensus pattern (28 bp):
CACACACAGTGCTCAGTTACAGAACTCA
Found at i:68854441 original size:39 final size:39
Alignment explanation
Indices: 68854397--68854555 Score: 255
Period size: 39 Copynumber: 4.1 Consensus size: 39
68854387 AATTATATTA
* * *
68854397 CCAGCACAAAGCCTACGGGACTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCAGGACTTTAGCCCGGATACATTT
68854436 CCAGCACGAAGCCTGCAGGACTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCAGGACTTTAGCCCGGATACATTT
* *
68854475 CCAACATGAAGCCTGCAGGACTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCAGGACTTTAGCCCGGATACATTT
* *
68854514 CCATCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCAGGACTTTAGCCCGGATACATTT
68854553 CCA
1 CCA
68854556 CTGTCTTGAA
Statistics
Matches: 112, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 112 1.00
ACGTcount: A:0.26, C:0.31, G:0.21, T:0.21
Consensus pattern (39 bp):
CCAGCACGAAGCCTGCAGGACTTTAGCCCGGATACATTT
Found at i:68858039 original size:14 final size:14
Alignment explanation
Indices: 68858020--68858053 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
68858010 TCTGTGTTTA
68858020 TTATGTGTGAAATT
1 TTATGTGTGAAATT
68858034 TTATGTGTGAAATT
1 TTATGTGTGAAATT
68858048 TT-TGTG
1 TTATGTG
68858054 ATTTAATTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 4 0.20
14 16 0.80
ACGTcount: A:0.24, C:0.00, G:0.24, T:0.53
Consensus pattern (14 bp):
TTATGTGTGAAATT
Found at i:68864047 original size:47 final size:46
Alignment explanation
Indices: 68863973--68864090 Score: 128
Period size: 47 Copynumber: 2.5 Consensus size: 46
68863963 ATGAGAGCCA
* * * * *
68863973 ATGTAAGACATGTCTGGGACATAGCATCGGCATTGATACGTGTGCC
1 ATGTAAGCCATATCTGGGATATGGCATCGGCATTGATACGTATGCC
* * * **
68864019 AGTGTAAGCCATATCTGGGATATGGCATCGGTATTGGTATGTATTTC
1 A-TGTAAGCCATATCTGGGATATGGCATCGGCATTGATACGTATGCC
68864066 ATGTAAGACCATATCTGGGATATGG
1 ATGTAAG-CCATATCTGGGATATGG
68864091 TGTTGATATG
Statistics
Matches: 60, Mismatches: 10, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
46 7 0.12
47 53 0.88
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.31
Consensus pattern (46 bp):
ATGTAAGCCATATCTGGGATATGGCATCGGCATTGATACGTATGCC
Found at i:68865694 original size:27 final size:26
Alignment explanation
Indices: 68865658--68865753 Score: 102
Period size: 27 Copynumber: 3.6 Consensus size: 26
68865648 CAGCATGGCT
**
68865658 ACCAGAACAGATAATGTGATAGATTC
1 ACCAGAACAGATAATGTGATAGAGCC
* *
68865684 ACCAGATACAGATGATCGTGCTAGAGCC
1 ACCAGA-ACAGATAAT-GTGATAGAGCC
**
68865712 ACCAGAACAGATATATGTGGCAGAGCC
1 ACCAGAACAGATA-ATGTGATAGAGCC
*
68865739 ACCAGATCAGATAAT
1 ACCAGAACAGATAAT
68865754 TGTGGCATAG
Statistics
Matches: 59, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
26 8 0.14
27 35 0.59
28 16 0.27
ACGTcount: A:0.39, C:0.21, G:0.22, T:0.19
Consensus pattern (26 bp):
ACCAGAACAGATAATGTGATAGAGCC
Found at i:68865757 original size:27 final size:26
Alignment explanation
Indices: 68865683--68865770 Score: 97
Period size: 27 Copynumber: 3.2 Consensus size: 26
68865673 GTGATAGATT
*
68865683 CACCAGATACAGATGATCGT-GCTAGAGC
1 CACCAGAT-CAGAT-ATTGTGGC-AGAGC
*
68865711 CACCAGAACAGATATATGTGGCAGAGC
1 CACCAGATCAGATAT-TGTGGCAGAGC
*
68865738 CACCAGATCAGATAATTGTGGCATAGC
1 CACCAGATCAGAT-ATTGTGGCAGAGC
68865765 CACCAG
1 CACCAG
68865771 GACGCTTTGT
Statistics
Matches: 53, Mismatches: 4, Indels: 7
0.83 0.06 0.11
Matches are distributed among these distances:
26 2 0.04
27 40 0.75
28 11 0.21
ACGTcount: A:0.34, C:0.25, G:0.24, T:0.17
Consensus pattern (26 bp):
CACCAGATCAGATATTGTGGCAGAGC
Found at i:68865766 original size:54 final size:54
Alignment explanation
Indices: 68865658--68865770 Score: 131
Period size: 54 Copynumber: 2.1 Consensus size: 54
68865648 CAGCATGGCT
* ** *
68865658 ACCAGAACAGATAATGTGATAGATTCACCAGATACAGATGATCGTGCTAGAGCC
1 ACCAGAACAGATAATGTGACAGAGCCACCAGATACAGATAATCGTGCTAGAGCC
* * *
68865712 ACCAGAACAGATATATGTGGCAGAGCCACCAGAT-CAGATAATTGTGGC-ATAGCC
1 ACCAGAACAGATA-ATGTGACAGAGCCACCAGATACAGATAATCGT-GCTAGAGCC
68865766 ACCAG
1 ACCAG
68865771 GACGCTTTGT
Statistics
Matches: 50, Mismatches: 7, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
54 32 0.64
55 18 0.36
ACGTcount: A:0.36, C:0.22, G:0.23, T:0.19
Consensus pattern (54 bp):
ACCAGAACAGATAATGTGACAGAGCCACCAGATACAGATAATCGTGCTAGAGCC
Found at i:68873547 original size:28 final size:28
Alignment explanation
Indices: 68873499--68873639 Score: 184
Period size: 27 Copynumber: 5.2 Consensus size: 28
68873489 CAGCATGGCT
*
68873499 ACCAGA-ACAGATAAT-GTGGCAGAGTC
1 ACCAGATACAGATAATCGTGGCAGAGCC
*
68873525 ACCAGATACAGATGATCGTGGCAGAGCC
1 ACCAGATACAGATAATCGTGGCAGAGCC
*
68873553 ACCAGATACAGATGATCGTGGCAGAGCC
1 ACCAGATACAGATAATCGTGGCAGAGCC
68873581 ACCAGA-ACAGATATAT-GTGGCAGAGCC
1 ACCAGATACAGATA-ATCGTGGCAGAGCC
* * *
68873608 ACCAGAT-CAGATAATTGTGGCATATCC
1 ACCAGATACAGATAATCGTGGCAGAGCC
68873635 ACCAG
1 ACCAG
68873640 GACGCTTCCT
Statistics
Matches: 105, Mismatches: 5, Indels: 9
0.88 0.04 0.08
Matches are distributed among these distances:
26 8 0.08
27 51 0.49
28 46 0.44
ACGTcount: A:0.35, C:0.23, G:0.26, T:0.16
Consensus pattern (28 bp):
ACCAGATACAGATAATCGTGGCAGAGCC
Found at i:68873558 original size:22 final size:24
Alignment explanation
Indices: 68873532--68873611 Score: 72
Period size: 28 Copynumber: 3.0 Consensus size: 24
68873522 GTCACCAGAT
68873532 ACAGATGATCGTGGCAGAGCCACC
1 ACAGATGATCGTGGCAGAGCCACC
68873556 AGATACAGATGATCGTGGCAGAGCCACC
1 ----ACAGATGATCGTGGCAGAGCCACC
*
68873584 AGAACAGAT-ATATGTGGCAGAGCCACC
1 ---ACAGATGAT-CGTGGCAGAGCCACC
68873611 A
1 A
68873612 GATCAGATAA
Statistics
Matches: 47, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
24 1 0.02
26 2 0.04
27 20 0.43
28 24 0.51
ACGTcount: A:0.34, C:0.25, G:0.28, T:0.14
Consensus pattern (24 bp):
ACAGATGATCGTGGCAGAGCCACC
Found at i:68884087 original size:42 final size:45
Alignment explanation
Indices: 68883986--68884087 Score: 120
Period size: 42 Copynumber: 2.3 Consensus size: 45
68883976 ACGTGTGCCA
* *
68883986 GTGTAAGACCATATCTGGGATATGGCATCAGCATTGGTATGTGATTTC
1 GTGTAAGACCATATCTGGGATATGG-AT-AG-ATTGATATGAGATTTC
* *
68884034 ATGTAAGACCATATCTGGGTTATGG-T-G-TTGATATGAGATTTC
1 GTGTAAGACCATATCTGGGATATGGATAGATTGATATGAGATTTC
68884076 GTGTAAGACCAT
1 GTGTAAGACCAT
68884088 GTAACACCCC
Statistics
Matches: 49, Mismatches: 5, Indels: 6
0.82 0.08 0.10
Matches are distributed among these distances:
42 24 0.49
44 1 0.02
46 1 0.02
48 23 0.47
ACGTcount: A:0.26, C:0.13, G:0.26, T:0.34
Consensus pattern (45 bp):
GTGTAAGACCATATCTGGGATATGGATAGATTGATATGAGATTTC
Found at i:68886055 original size:19 final size:18
Alignment explanation
Indices: 68886026--68886061 Score: 63
Period size: 19 Copynumber: 1.9 Consensus size: 18
68886016 TTTAATATAA
68886026 AAATTTACATAAATAAAC
1 AAATTTACATAAATAAAC
68886044 AAATTATACATAAATAAA
1 AAATT-TACATAAATAAA
68886062 TTTAAAAGAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 5 0.29
19 12 0.71
ACGTcount: A:0.64, C:0.08, G:0.00, T:0.28
Consensus pattern (18 bp):
AAATTTACATAAATAAAC
Found at i:68887832 original size:22 final size:22
Alignment explanation
Indices: 68887795--68887839 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 22
68887785 GGTTGGTGAT
68887795 TTGGGTTAGGGGTTTATTTAGTAA
1 TTGGGTTA-GGGTTTATTT-GTAA
68887819 TTGGGTT-GGGTTTATTTGTAA
1 TTGGGTTAGGGTTTATTTGTAA
68887840 AAATGTTACA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
21 4 0.19
22 10 0.48
24 7 0.33
ACGTcount: A:0.18, C:0.00, G:0.33, T:0.49
Consensus pattern (22 bp):
TTGGGTTAGGGTTTATTTGTAA
Found at i:68888350 original size:177 final size:176
Alignment explanation
Indices: 68888047--68888707 Score: 825
Period size: 177 Copynumber: 3.7 Consensus size: 176
68888037 AATAGGACTG
* * * * ** * * *
68888047 GTGGCTCAAATCTGCTCCATTGCCAATAGATGGAGATAAGATTCATAATCCTCAATCTCCTCCAC
1 GTGGCTAAAATCTGCTCCATTGTCGATACATGGAGATAAGATTCACCATCTTCGATCTGCTCCAC
* * *
68888112 AACTGCTTA-GGGAAATAGATCTTCAATCTTCAGTCTGCTTCCTTGCTACCTCA-AGAAGATAAG
66 AGCTGCTTAGGGGATA-AGATCTTCAATCTTCAATCTGCTTCCTTGCTACCTCAGA-AAGATAAG
68888175 ACTACAATTGCCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTA
129 ACTACAATTGCCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTA
* **
68888223 GTGGCTAAAATCTGCTCCATTGTCGATACATGGAGTTAAGATTTGCCATCTTCGATCTGC-CTCA
1 GTGGCTAAAATCTGCTCCATTGTCGATACATGGAGATAAGATTCACCATCTTCGATCTGCTC-CA
68888287 CAGCTGCTTAAGGGGATAAGATCTTCAATCTTCAATCTGCTTCCTTGCTACCTCAGAAAGATAAG
65 CAGCTGCTT-AGGGGATAAGATCTTCAATCTTCAATCTGCTTCCTTGCTACCTCAGAAAGATAAG
* ** *
68888352 ACTATAAACGCCAACCTGCTCTCTTGCTACCTTAGAGAGATAAGGCTA
129 ACTACAATTGCCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTA
* *
68888400 GTGGCTAAAATCTGCTCCATTGTCGATACATGGAGATAAGATTCGCCATCTTTGATCTGCTCCAC
1 GTGGCTAAAATCTGCTCCATTGTCGATACATGGAGATAAGATTCACCATCTTCGATCTGCTCCA-
* * * * * * *
68888465 CA-CTGCTTAGGAAGATAAGATCGTCAATCTTCGATCTCCTTCCTTGCTACTTTAGGAAGATAAG
65 CAGCTGCTTAGG-GGATAAGATCTTCAATCTTCAATCTGCTTCCTTGCTACCTCAGAAAGATAAG
* *
68888529 ACT-C-ATT-CTTCAACCTGCTCTCCTACTACCTCAGAGAGATAAGGCTA
129 ACTACAATTGC--CAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTA
* * *
68888576 GTGG-TAAAATCTGTTTCATTATCGATACATGGAGATAAGATTCACCATCTTCGATCTGCTCCAC
1 GTGGCTAAAATCTGCTCCATTGTCGATACATGGAGATAAGATTCACCATCTTCGATCTGCTCCAC
* ** * * *
68888640 TGCAACTTCAGGGCGATAAGATCTTCAACCTTCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAG
66 AGCTGCTT-AGGG-GATAAGATCTTCAATCTTCAATCTGCTTCCTTGCTACCTCAGAAAGATAAG
68888705 ACT
129 ACT
68888708 TGTTTATTGA
Statistics
Matches: 422, Mismatches: 51, Indels: 24
0.85 0.10 0.05
Matches are distributed among these distances:
174 2 0.00
175 60 0.14
176 149 0.35
177 202 0.48
178 9 0.02
ACGTcount: A:0.28, C:0.25, G:0.18, T:0.29
Consensus pattern (176 bp):
GTGGCTAAAATCTGCTCCATTGTCGATACATGGAGATAAGATTCACCATCTTCGATCTGCTCCAC
AGCTGCTTAGGGGATAAGATCTTCAATCTTCAATCTGCTTCCTTGCTACCTCAGAAAGATAAGAC
TACAATTGCCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTA
Found at i:68888703 original size:353 final size:353
Alignment explanation
Indices: 68888047--68888707 Score: 922
Period size: 353 Copynumber: 1.9 Consensus size: 353
68888037 AATAGGACTG
* * *
68888047 GTGGCTCAAATCTGCTCCATTGCCAATAGATGGAGATAAGATTCATAATCCTCAATCTCCTCCAC
1 GTGGCTAAAATCTGCTCCATTGCCAATACATGGAGATAAGATTCACAATCCTCAATCTCCTCCAC
* *
68888112 AACTGCTTAGGGAAATAGATCTTCAATCTTCAGTCTGCTTCCTTGCTACCTCAAGAAGATAAGAC
66 AACTGCTTAGGGAAATAGATCGTCAATCTTCAGTCTCCTTCCTTGCTACCTCAAGAAGATAAGAC
* *
68888177 TACAATTGCCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCTAGTGGCTAAAATCTGCTCCA
131 TACAATTGCCAACCTGCTCTCCTACTACCTCAGAGAGATAAGGCTAGTGGCTAAAATCTGCTCCA
* * ** **
68888242 TTGTCGATACATGGAGTTAAGATTTGCCATCTTCGATCTGCCTCACAGCTGCTTAAGGGGATAAG
196 TTATCGATACATGGAGATAAGATTCACCATCTTCGATCTGCCTCACAGCAACTTAAGGGGATAAG
*
68888307 ATCTTCAATCTTCAATCTGCTTCCTTGCTACCTCAGAAAGATAAGACTATAAACGCCAACCTGCT
261 ATCTTCAACCTTCAATCTGCTTCCTTGCTACCTCAGAAAGATAAGACTATAAACGCCAACCTGCT
68888372 CTCTTGCTACCTTAGAGAGATAAGGCTA
326 CTCTTGCTACCTTAGAGAGATAAGGCTA
* * * * * ** *
68888400 GTGGCTAAAATCTGCTCCATTGTCGATACATGGAGATAAGATTCGCCATCTTTGATCTGCTCCAC
1 GTGGCTAAAATCTGCTCCATTGCCAATACATGGAGATAAGATTCACAATCCTCAATCTCCTCCAC
* * * *
68888465 CACTGCTTA-GGAAGATAAGATCGTCAATCTTC-GATCTCCTTCCTTGCTACTTTAGGAAGATAA
66 AACTGCTTAGGGAA-AT-AGATCGTCAATCTTCAG-TCTCCTTCCTTGCTACCTCAAGAAGATAA
68888528 GACT-C-ATT-CTTCAACCTGCTCTCCTACTACCTCAGAGAGATAAGGCTAGTGG-TAAAATCTG
128 GACTACAATTGC--CAACCTGCTCTCCTACTACCTCAGAGAGATAAGGCTAGTGGCTAAAATCTG
* * * *
68888589 TTTCATTATCGATACATGGAGATAAGATTCACCATCTTCGATCTG-CTCCACTGCAACTTCAGGG
191 CTCCATTATCGATACATGGAGATAAGATTCACCATCTTCGATCTGCCT-CACAGCAACTTAAGGG
* *
68888653 CGATAAGATCTTCAACCTTCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACT
255 -GATAAGATCTTCAACCTTCAATCTGCTTCCTTGCTACCTCAGAAAGATAAGACT
68888708 TGTTTATTGA
Statistics
Matches: 269, Mismatches: 32, Indels: 14
0.85 0.10 0.04
Matches are distributed among these distances:
351 3 0.01
352 67 0.25
353 156 0.58
354 43 0.16
ACGTcount: A:0.28, C:0.25, G:0.18, T:0.29
Consensus pattern (353 bp):
GTGGCTAAAATCTGCTCCATTGCCAATACATGGAGATAAGATTCACAATCCTCAATCTCCTCCAC
AACTGCTTAGGGAAATAGATCGTCAATCTTCAGTCTCCTTCCTTGCTACCTCAAGAAGATAAGAC
TACAATTGCCAACCTGCTCTCCTACTACCTCAGAGAGATAAGGCTAGTGGCTAAAATCTGCTCCA
TTATCGATACATGGAGATAAGATTCACCATCTTCGATCTGCCTCACAGCAACTTAAGGGGATAAG
ATCTTCAACCTTCAATCTGCTTCCTTGCTACCTCAGAAAGATAAGACTATAAACGCCAACCTGCT
CTCTTGCTACCTTAGAGAGATAAGGCTA
Found at i:68888964 original size:64 final size:64
Alignment explanation
Indices: 68888863--68889054 Score: 348
Period size: 64 Copynumber: 3.0 Consensus size: 64
68888853 TTCATGTATC
* *
68888863 ATGCTTATGTCAAATAATTAGGATGCTATGATCAAAATGAATCAAATACTCCTAACTAGATTTG
1 ATGCTTATGTCAAATAATTAGGATGCTATGATCAAAATGAATCAAATGCTCCTAACTAGATGTG
*
68888927 ATGCTTATGTAAAATAATTAGGATGCTATGATCAAAATGAATCAAATGCTCCTAACTAGATGTG
1 ATGCTTATGTCAAATAATTAGGATGCTATGATCAAAATGAATCAAATGCTCCTAACTAGATGTG
*
68888991 ATGCTTATGTCAAATAATTAGGATGCTATGATAAAAATGAATCAAATGCTCCTAACTAGATGTG
1 ATGCTTATGTCAAATAATTAGGATGCTATGATCAAAATGAATCAAATGCTCCTAACTAGATGTG
68889055 TTATGAATGA
Statistics
Matches: 123, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
64 123 1.00
ACGTcount: A:0.39, C:0.13, G:0.16, T:0.32
Consensus pattern (64 bp):
ATGCTTATGTCAAATAATTAGGATGCTATGATCAAAATGAATCAAATGCTCCTAACTAGATGTG
Found at i:68895559 original size:19 final size:18
Alignment explanation
Indices: 68895530--68895565 Score: 63
Period size: 19 Copynumber: 1.9 Consensus size: 18
68895520 TTTAATATAA
68895530 AAATTTACATAAATAAAC
1 AAATTTACATAAATAAAC
68895548 AAATTATACATAAATAAA
1 AAATT-TACATAAATAAA
68895566 TTTAAAAGAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 5 0.29
19 12 0.71
ACGTcount: A:0.64, C:0.08, G:0.00, T:0.28
Consensus pattern (18 bp):
AAATTTACATAAATAAAC
Found at i:68898131 original size:40 final size:40
Alignment explanation
Indices: 68898079--68898270 Score: 296
Period size: 40 Copynumber: 4.8 Consensus size: 40
68898069 AGACATAGCT
* *
68898079 ACTCGCTCAAATGCCTTCGGGACTTAGCCCGGTTATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTA
*
68898119 ACTCGCACAAATGCCTTCGGGACTTAGCCCAGATATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTA
68898159 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTA
* *
68898199 ACTTGCACAAATGCCTTCGGGACTTAGCCCGGA-ATTAGTC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATA-TAGTA
* * *
68898239 TCTAGCAGAAATGCCTTCGGGACTTAGCCCGG
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG
68898271 TTATCATCCG
Statistics
Matches: 142, Mismatches: 9, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
39 1 0.01
40 141 0.99
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTA
Found at i:68898185 original size:80 final size:78
Alignment explanation
Indices: 68898053--68898274 Score: 304
Period size: 80 Copynumber: 2.8 Consensus size: 78
68898043 CAACCAAGTA
* * *
68898053 CCTTCGAGATTTAG-CCAGACATAGCTACTCGCTCAAATGCCTTCGGGACTTAGCCCGGTTATAG
1 CCTTCGGGACTTAGCCCAGA-ATAG-TACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAG
68898117 TAACTCGCACAAATG
64 TAACTCGCACAAATG
*
68898132 CCTTCGGGACTTAGCCCAGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
1 CCTTCGGGACTTAGCCCAGA-ATAGT-ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAG
*
68898197 TAACTTGCACAAATG
64 TAACTCGCACAAATG
* *
68898212 CCTTCGGGACTTAGCCCGGAATTAGT-CTCTAGCAGAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CCTTCGGGACTTAGCCCAGAA-TAGTACTC--GCACAAATGCCTTCGGGACTTAGCCCGGTTAT
68898275 CATCCGAATA
Statistics
Matches: 129, Mismatches: 9, Indels: 9
0.88 0.06 0.06
Matches are distributed among these distances:
78 3 0.02
79 14 0.11
80 112 0.87
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (78 bp):
CCTTCGGGACTTAGCCCAGAATAGTACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTA
ACTCGCACAAATG
Found at i:68900277 original size:17 final size:16
Alignment explanation
Indices: 68900251--68900285 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
68900241 AAACTGGAGC
68900251 TTGGGACATTTGGGCTA
1 TTGGGACA-TTGGGCTA
*
68900268 TTGGGTCATTGGGCTA
1 TTGGGACATTGGGCTA
68900284 TT
1 TT
68900286 TTAGAGATTG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 10 0.59
17 7 0.41
ACGTcount: A:0.14, C:0.11, G:0.34, T:0.40
Consensus pattern (16 bp):
TTGGGACATTGGGCTA
Found at i:68905923 original size:17 final size:17
Alignment explanation
Indices: 68905903--68905959 Score: 71
Period size: 17 Copynumber: 3.4 Consensus size: 17
68905893 CACACATCAT
68905903 TCACATGCTACCATTTA
1 TCACATGCTACCATTTA
* * *
68905920 TCACATACAAACA-TTA
1 TCACATGCTACCATTTA
68905936 TTCACATGCTACCATTTA
1 -TCACATGCTACCATTTA
68905954 TCACAT
1 TCACAT
68905960 ACAAACATCA
Statistics
Matches: 32, Mismatches: 6, Indels: 4
0.76 0.14 0.10
Matches are distributed among these distances:
16 3 0.09
17 26 0.81
18 3 0.09
ACGTcount: A:0.35, C:0.28, G:0.04, T:0.33
Consensus pattern (17 bp):
TCACATGCTACCATTTA
Found at i:68905944 original size:34 final size:34
Alignment explanation
Indices: 68905896--68905969 Score: 139
Period size: 34 Copynumber: 2.2 Consensus size: 34
68905886 GGACATCCAC
68905896 ACATCATTCACATGCTACCATTTATCACATACAA
1 ACATCATTCACATGCTACCATTTATCACATACAA
*
68905930 ACATTATTCACATGCTACCATTTATCACATACAA
1 ACATCATTCACATGCTACCATTTATCACATACAA
68905964 ACATCA
1 ACATCA
68905970 CATACTTATC
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
34 38 1.00
ACGTcount: A:0.39, C:0.28, G:0.03, T:0.30
Consensus pattern (34 bp):
ACATCATTCACATGCTACCATTTATCACATACAA
Found at i:68913310 original size:16 final size:16
Alignment explanation
Indices: 68913285--68913315 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
68913275 TGGCATTTTG
68913285 ATAGTGAATTGAAATT
1 ATAGTGAATTGAAATT
*
68913301 ATAGTTAATTGAAAT
1 ATAGTGAATTGAAAT
68913316 GGATTGAATT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.45, C:0.00, G:0.16, T:0.39
Consensus pattern (16 bp):
ATAGTGAATTGAAATT
Found at i:68916422 original size:27 final size:27
Alignment explanation
Indices: 68916392--68916477 Score: 70
Period size: 27 Copynumber: 3.1 Consensus size: 27
68916382 CAAAGTAAGG
68916392 TTTAGGTATGTCAAGTGTGAGAGTGAT
1 TTTAGGTATGTCAAGTGTGAGAGTGAT
* * **
68916419 TTTAGGTCATTTTGAAGTGCTTTTGCAG-G--
1 TTTAGGT-A-TGTCAAGTG--TGAG-AGTGAT
68916448 TTTAGGTATGTCAAGTGTGAGAGTGAT
1 TTTAGGTATGTCAAGTGTGAGAGTGAT
68916475 TTT
1 TTT
68916478 GGGTCATTTT
Statistics
Matches: 43, Mismatches: 8, Indels: 16
0.64 0.12 0.24
Matches are distributed among these distances:
24 2 0.05
25 3 0.07
27 17 0.40
28 2 0.05
29 14 0.33
31 3 0.07
32 2 0.05
ACGTcount: A:0.22, C:0.06, G:0.30, T:0.42
Consensus pattern (27 bp):
TTTAGGTATGTCAAGTGTGAGAGTGAT
Found at i:68916456 original size:56 final size:56
Alignment explanation
Indices: 68916389--68916499 Score: 213
Period size: 56 Copynumber: 2.0 Consensus size: 56
68916379 CTTCAAAGTA
68916389 AGGTTTAGGTATGTCAAGTGTGAGAGTGATTTTAGGTCATTTTGAAGTGCTTTTGC
1 AGGTTTAGGTATGTCAAGTGTGAGAGTGATTTTAGGTCATTTTGAAGTGCTTTTGC
*
68916445 AGGTTTAGGTATGTCAAGTGTGAGAGTGATTTTGGGTCATTTTGAAGTGCTTTTG
1 AGGTTTAGGTATGTCAAGTGTGAGAGTGATTTTAGGTCATTTTGAAGTGCTTTTG
68916500 GATCATCTAA
Statistics
Matches: 54, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 54 1.00
ACGTcount: A:0.21, C:0.06, G:0.32, T:0.41
Consensus pattern (56 bp):
AGGTTTAGGTATGTCAAGTGTGAGAGTGATTTTAGGTCATTTTGAAGTGCTTTTGC
Found at i:68922608 original size:15 final size:15
Alignment explanation
Indices: 68922588--68922619 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
68922578 GTGGTAAGAA
*
68922588 TTTAATATTTAATTT
1 TTTAATACTTAATTT
68922603 TTTAATACTTAATTT
1 TTTAATACTTAATTT
68922618 TT
1 TT
68922620 AATTTATCAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.31, C:0.03, G:0.00, T:0.66
Consensus pattern (15 bp):
TTTAATACTTAATTT
Found at i:68932943 original size:47 final size:47
Alignment explanation
Indices: 68932877--68933211 Score: 544
Period size: 47 Copynumber: 7.1 Consensus size: 47
68932867 GAAATGATAG
*
68932877 TAAGGCCTAATGGCCGATGTGATGAATGTAAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
68932924 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATTTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
68932971 TAAGGCCAAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
68933018 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
*
68933067 TAAGGCCTAATGGCCGAAGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
68933114 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * * * * * * *
68933161 CAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
68933208 TAAG
1 TAAG
68933212 TCCCGAAGGG
Statistics
Matches: 269, Mismatches: 17, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
47 223 0.83
49 46 0.17
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.28
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:68933133 original size:143 final size:143
Alignment explanation
Indices: 68932877--68933211 Score: 543
Period size: 143 Copynumber: 2.4 Consensus size: 143
68932867 GAAATGATAG
*
68932877 TAAGGCCTAATGGCCGATGTGATGAATGTAAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
* *
68932940 ATGTGATGAATGTGAAAGTGTATATATTTGATAAGGCCAAATGGCCGATGTGATGAATGTGAAAG
66 AAGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCAAATGGCCGATGTGATGAATGTGAAAG
68933005 TGTATATATGTGA
131 TGTATATATGTGA
68933018 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
*
68933083 AAGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
66 AAGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCAAATGGCCGATGTGATGAATGTGAAAG
68933148 TGTATATATGTGA
131 TGTATATATGTGA
* * * * * * *
68933161 CAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATA-A-ATGTGATAAG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAG
68933212 TCCCGAAGGG
Statistics
Matches: 181, Mismatches: 11, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
141 45 0.25
142 1 0.01
143 135 0.75
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.28
Consensus pattern (143 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
AAGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCAAATGGCCGATGTGATGAATGTGAAAG
TGTATATATGTGA
Found at i:68933386 original size:37 final size:37
Alignment explanation
Indices: 68933330--68933408 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
68933320 CCGAGCTGTA
* * *
68933330 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
68933367 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
68933404 AAGAC
1 AAGAC
68933409 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:68934943 original size:40 final size:40
Alignment explanation
Indices: 68934620--68934925 Score: 506
Period size: 40 Copynumber: 7.7 Consensus size: 40
68934610 GAGAATTGAG
68934620 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
68934660 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
68934700 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
68934740 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
68934780 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
* * *
68934820 AGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
* * * *
68934860 AGTAATATATCCGTGCTAA-ACCTCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCC-CGAGGAGCATTCGTGCT
* * *
68934900 GGTGTTATATCCGGGCTAGGTCCCGA
1 AGTGATATATCCGGGCTAAGTCCCGA
68934926 AGAGTAATCA
Statistics
Matches: 250, Mismatches: 14, Indels: 4
0.93 0.05 0.01
Matches are distributed among these distances:
39 1 0.00
40 247 0.99
41 2 0.01
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.26
Consensus pattern (40 bp):
AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
Found at i:68938394 original size:47 final size:47
Alignment explanation
Indices: 68938328--68938613 Score: 455
Period size: 47 Copynumber: 6.0 Consensus size: 47
68938318 GAAATGATAG
68938328 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* *
68938375 TAAGGCCTAATGGCCGATGTGATGAATGTGAAATTGTATAAATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
68938422 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
68938471 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
68938518 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * * * * ** * *
68938565 CAGGGCCGAGTGGCCAACATGATGGATGTGAAAGTGTATAAATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
68938612 TA
1 TA
68938614 TGTCCCGAAG
Statistics
Matches: 223, Mismatches: 14, Indels: 4
0.93 0.06 0.02
Matches are distributed among these distances:
47 177 0.79
49 46 0.21
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:68938502 original size:96 final size:94
Alignment explanation
Indices: 68938328--68938613 Score: 464
Period size: 96 Copynumber: 3.0 Consensus size: 94
68938318 GAAATGATAG
68938328 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
*
68938393 GTGATGAATGTGAAATTGTATAAATGTGA
66 GTGATGAATGTGAAAGTGTATAAATGTGA
68938422 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
*
68938487 ATGTGATGAATGTGAAAGTGTATATATGTGA
64 ATGTGATGAATGTGAAAGTGTATAAATGTGA
* * * * * *
68938518 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAAC
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
* *
68938583 ATGATGGATGTGAAAGTGTATAAATGTGA
66 GTGATGAATGTGAAAGTGTATAAATGTGA
68938612 TA
1 TA
68938614 TGTCCCGAAG
Statistics
Matches: 179, Mismatches: 11, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
94 87 0.49
96 92 0.51
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.29
Consensus pattern (94 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
GTGATGAATGTGAAAGTGTATAAATGTGA
Found at i:68938588 original size:143 final size:141
Alignment explanation
Indices: 68938328--68938613 Score: 464
Period size: 143 Copynumber: 2.0 Consensus size: 141
68938318 GAAATGATAG
68938328 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
* * * * **
68938393 GTGATGAATGTGAAATTGTATAAATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
66 GTGATGAATGTGAAAGTGTATAAATGTGACAAGGCCGAATGGCCAACATGATGAATGTGAAAGTG
68938458 TATATATATGTGA
131 TATA-A-ATGTGA
68938471 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
* * * *
68938536 GTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACATGATGGATGTGAAAGTG
66 GTGATGAATGTGAAAGTGTATAAATGTGACAAGGCCGAATGGCCAACATGATGAATGTGAAAGTG
68938601 TATAAATGTGA
131 TATAAATGTGA
68938612 TA
1 TA
68938614 TGTCCCGAAG
Statistics
Matches: 133, Mismatches: 10, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
141 8 0.06
142 1 0.01
143 124 0.93
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.29
Consensus pattern (141 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
GTGATGAATGTGAAAGTGTATAAATGTGACAAGGCCGAATGGCCAACATGATGAATGTGAAAGTG
TATAAATGTGA
Found at i:68938790 original size:37 final size:37
Alignment explanation
Indices: 68938734--68938812 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
68938724 CCTAGCTCTA
* * *
68938734 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
* *
68938771 AAGACCTGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
68938808 AAGAC
1 AAGAC
68938813 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.24, C:0.18, G:0.32, T:0.27
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:68941987 original size:41 final size:41
Alignment explanation
Indices: 68941921--68942070 Score: 194
Period size: 41 Copynumber: 3.7 Consensus size: 41
68941911 TCGGGGTTTA
*
68941921 AATCCGAGTTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
* *
68941962 AATCTGAGCTTGGTCTCAAAGGGCTTTTGAGCCAGTGTCAT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
* * * * * * * *
68942003 AA-CCGAACCTAGTTTCGAAGGGCCTTCGGGCCAATGTCAT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
68942043 AATCCGAGCTTGGTCTCGAAGGGCTTTT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTT
68942071 TGAGTCAGCG
Statistics
Matches: 89, Mismatches: 19, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
40 30 0.34
41 59 0.66
ACGTcount: A:0.21, C:0.22, G:0.27, T:0.29
Consensus pattern (41 bp):
AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
Found at i:68948535 original size:39 final size:40
Alignment explanation
Indices: 68948434--68948651 Score: 216
Period size: 39 Copynumber: 5.5 Consensus size: 40
68948424 TTGAATGATG
* * *
68948434 TCCGGGCTAAGTCCCAAAGGC-TTTGTGCTA-AGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
* *
68948473 ATCCGGACTAAGAT-CCGAAGGCATTTGTACGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
*
68948514 TCCGGGCTAAG-CCCGAAGGCATTTGTGGGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* * *
68948553 TCCGGGCTAAG-CCCGAAGGCATTTGTGCAAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* * *
68948592 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
68948631 AACCGGGCTATGTCCCGAAGG
1 -TCCGGGCTAAGTCCCGAAGG
68948652 TGTTTGAACG
Statistics
Matches: 152, Mismatches: 19, Indels: 14
0.82 0.10 0.08
Matches are distributed among these distances:
39 71 0.47
40 69 0.45
41 11 0.07
42 1 0.01
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:68956787 original size:39 final size:38
Alignment explanation
Indices: 68956740--68956882 Score: 196
Period size: 39 Copynumber: 3.7 Consensus size: 38
68956730 GGACTAAGAT
68956740 CCGAAGGCATTTGTGCGAGATACTAATTCCAGGCTAAGC
1 CCGAAGGCATTTGTGCGAGATACTAATTCC-GGCTAAGC
68956779 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGC
1 CCGAAGGCATTTGTGCGAGATACTAATTCC-GGCTAAGC
* * *
68956818 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTCAAGTC
1 CCGAAGGCATTTGTGCGAGATACTAATTCCGGCT-AAG-C
* * *
68956858 CCAAAGGCAATTGTGCGAGTTACTA
1 CCGAAGGCATTTGTGCGAGATACTA
68956883 TAACCGGGCT
Statistics
Matches: 96, Mismatches: 6, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
38 3 0.03
39 69 0.72
40 24 0.25
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.24
Consensus pattern (38 bp):
CCGAAGGCATTTGTGCGAGATACTAATTCCGGCTAAGC
Found at i:68961743 original size:41 final size:41
Alignment explanation
Indices: 68961686--68961835 Score: 203
Period size: 41 Copynumber: 3.7 Consensus size: 41
68961676 TCGGGGTTTA
*
68961686 AATCCGAGTTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
*
68961727 AATCCGAGCTTGGTCTCAAAGGGCTTTTGAGCCAGTGTCAT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
* * * * * * * *
68961768 AA-CCGAACCTAGTTTCGAAGGGCCTTCGGGCCAATGTCAT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
68961808 AATCCGAGCTTGGTCTCGAAGGGCTTTT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTT
68961836 TGAGTCAGCG
Statistics
Matches: 91, Mismatches: 17, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
40 31 0.34
41 60 0.66
ACGTcount: A:0.21, C:0.23, G:0.27, T:0.29
Consensus pattern (41 bp):
AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
Found at i:68965313 original size:8 final size:8
Alignment explanation
Indices: 68965296--68965333 Score: 60
Period size: 8 Copynumber: 4.9 Consensus size: 8
68965286 AGTCAAGCAT
68965296 AGAA-AAG
1 AGAAGAAG
68965303 AGAAGAAG
1 AGAAGAAG
*
68965311 AGAAGATG
1 AGAAGAAG
68965319 AGAAGAAG
1 AGAAGAAG
68965327 AGAAGAA
1 AGAAGAA
68965334 CGGTATCTAG
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
7 4 0.14
8 24 0.86
ACGTcount: A:0.63, C:0.00, G:0.34, T:0.03
Consensus pattern (8 bp):
AGAAGAAG
Found at i:68967974 original size:19 final size:21
Alignment explanation
Indices: 68967933--68967976 Score: 56
Period size: 19 Copynumber: 2.2 Consensus size: 21
68967923 TATATATGCC
*
68967933 AAATCAAGTAATAAAGTGATT
1 AAATCAAGTAATAAAATGATT
*
68967954 AAAT-AAGT-ATAAAATGGTT
1 AAATCAAGTAATAAAATGATT
68967973 AAAT
1 AAAT
68967977 GGTGCAAGTA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 13 0.62
20 4 0.19
21 4 0.19
ACGTcount: A:0.55, C:0.02, G:0.14, T:0.30
Consensus pattern (21 bp):
AAATCAAGTAATAAAATGATT
Found at i:68968013 original size:62 final size:62
Alignment explanation
Indices: 68967911--68968035 Score: 232
Period size: 62 Copynumber: 2.0 Consensus size: 62
68967901 TATGATATGC
*
68967911 AAATTGTGCAAGTATATATGCCAAATCAAGTAATAAAGTGATTAAATAAGTATAAAATGGTT
1 AAATGGTGCAAGTATATATGCCAAATCAAGTAATAAAGTGATTAAATAAGTATAAAATGGTT
*
68967973 AAATGGTGCAAGTATATATGCCAAATCAAGTAATAAAGTGATTGAATAAGTATAAAATGGTT
1 AAATGGTGCAAGTATATATGCCAAATCAAGTAATAAAGTGATTAAATAAGTATAAAATGGTT
68968035 A
1 A
68968036 GGTTATTATA
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
62 61 1.00
ACGTcount: A:0.46, C:0.06, G:0.18, T:0.30
Consensus pattern (62 bp):
AAATGGTGCAAGTATATATGCCAAATCAAGTAATAAAGTGATTAAATAAGTATAAAATGGTT
Found at i:68975105 original size:43 final size:43
Alignment explanation
Indices: 68974993--68975162 Score: 132
Period size: 43 Copynumber: 4.0 Consensus size: 43
68974983 ATAAAGCTCG
* * * *
68974993 TACAATGCC-ATATCCCAGATATGGTCTTACATGTTATCAC-A
1 TACAATGCCAATGTCCCAGAAATGGTCTTACACGTAATCACAA
* * * * * * *
68975034 TATCGATGCCACTATCCCAGACAGGGTCTTATACG-AATTCA-TA
1 TA-CAATGCCAATGTCCCAGAAATGGTCTTACACGTAA-TCACAA
* *
68975077 TAACAATGCCAATGTCCTAGAGATGGTCTTACACGTAATCACAA
1 T-ACAATGCCAATGTCCCAGAAATGGTCTTACACGTAATCACAA
* * * *
68975121 TACAATGTCAATGTCCCAGAAATGGTCCTCCATGTAATCACA
1 TACAATGCCAATGTCCCAGAAATGGTCTTACACGTAATCACA
68975163 TATTGGTAAT
Statistics
Matches: 101, Mismatches: 21, Indels: 12
0.75 0.16 0.09
Matches are distributed among these distances:
41 2 0.02
42 7 0.07
43 87 0.86
44 5 0.05
ACGTcount: A:0.33, C:0.25, G:0.15, T:0.28
Consensus pattern (43 bp):
TACAATGCCAATGTCCCAGAAATGGTCTTACACGTAATCACAA
Found at i:68975350 original size:29 final size:29
Alignment explanation
Indices: 68975317--68975374 Score: 107
Period size: 29 Copynumber: 2.0 Consensus size: 29
68975307 ATAAATCAAT
*
68975317 TTAAAGGTATTTATTTGCATATGAACTTA
1 TTAAAGGTATTTATTTGCATATCAACTTA
68975346 TTAAAGGTATTTATTTGCATATCAACTTA
1 TTAAAGGTATTTATTTGCATATCAACTTA
68975375 CCTCGTATTA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.34, C:0.09, G:0.12, T:0.45
Consensus pattern (29 bp):
TTAAAGGTATTTATTTGCATATCAACTTA
Found at i:68979574 original size:44 final size:45
Alignment explanation
Indices: 68979485--68979575 Score: 105
Period size: 44 Copynumber: 2.0 Consensus size: 45
68979475 GCTTCGTGAT
* * * *
68979485 ATACGAGGCATTCGAACTCATTGAGTTGCTCTGGGCTCATTATGG
1 ATACGAGGCATTCGAACTCATTGAATTGCTCCGAGCTCATAATGG
* *
68979530 ATACGA-GCA-TCTGAACTCGTTGAATTGCTCCGAGTTCATAATGG
1 ATACGAGGCATTC-GAACTCATTGAATTGCTCCGAGCTCATAATGG
68979574 AT
1 AT
68979576 GCGATACATG
Statistics
Matches: 39, Mismatches: 6, Indels: 3
0.81 0.12 0.06
Matches are distributed among these distances:
43 2 0.05
44 31 0.79
45 6 0.15
ACGTcount: A:0.25, C:0.20, G:0.24, T:0.31
Consensus pattern (45 bp):
ATACGAGGCATTCGAACTCATTGAATTGCTCCGAGCTCATAATGG
Found at i:68979601 original size:52 final size:52
Alignment explanation
Indices: 68979536--68979639 Score: 154
Period size: 52 Copynumber: 2.0 Consensus size: 52
68979526 ATGGATACGA
* *
68979536 GCATCTGAACTCGTTGAATTGCTCCGAGTTCATAATGGATGCGATACATGTG
1 GCATCCGAACTCGTTGAATTGCTCCGAGTTCATAATGGATCCGATACATGTG
* * * *
68979588 GCATCCGAGCTCGTTGAGTTGGTCCGAGTTTATAATGGATCCGATACATGTG
1 GCATCCGAACTCGTTGAATTGCTCCGAGTTCATAATGGATCCGATACATGTG
68979640 ATTGAGTCTC
Statistics
Matches: 46, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
52 46 1.00
ACGTcount: A:0.23, C:0.19, G:0.27, T:0.31
Consensus pattern (52 bp):
GCATCCGAACTCGTTGAATTGCTCCGAGTTCATAATGGATCCGATACATGTG
Found at i:68980043 original size:6 final size:6
Alignment explanation
Indices: 68980032--68980058 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
68980022 TGAGAAAGTT
68980032 TATGTA TATGTA TATGTA TATGTA TAT
1 TATGTA TATGTA TATGTA TATGTA TAT
68980059 ATATGAACAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.33, C:0.00, G:0.15, T:0.52
Consensus pattern (6 bp):
TATGTA
Found at i:68988460 original size:125 final size:125
Alignment explanation
Indices: 68988238--68988481 Score: 364
Period size: 125 Copynumber: 2.0 Consensus size: 125
68988228 ATTTAAAAAT
* ** *
68988238 GATTGACTTGTGAATGCAAGGTTCGTAGAACAAGGAACTCGAGTTTGGACTGAGCCAGATCGTGT
1 GATTGAATTGTGAATGCAAGGTTCGTAGAACAAGGAACTCGAGTGAGGACTGAGCCAGATCATGT
* *
68988303 CAAGAAAAGGTGAAAATTAAGGAAAGTGACATGCACATAGGTCAGGGGTCACTTACAAAC
66 CAAGAAAAGGAGAAAATTAAGGAAAGAGACATGCACATAGGTCAGGGGTCACTTACAAAC
* * * *
68988363 GATTGAATTGTGAATGCAGGGTTCGTAGAATAAGGAATTCGAGTGAGGA-TCGAGCCATATCATG
1 GATTGAATTGTGAATGCAAGGTTCGTAGAACAAGGAACTCGAGTGAGGACT-GAGCCAGATCATG
* *
68988427 TCGAGAAAAGGAGAAAATTAAGGAACGAGACATGCACATAGGTCAGGGGTCACTT
65 TCAAGAAAAGGAGAAAATTAAGGAAAGAGACATGCACATAGGTCAGGGGTCACTT
68988482 CTAGGGACTT
Statistics
Matches: 106, Mismatches: 12, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
124 1 0.01
125 105 0.99
ACGTcount: A:0.35, C:0.14, G:0.29, T:0.22
Consensus pattern (125 bp):
GATTGAATTGTGAATGCAAGGTTCGTAGAACAAGGAACTCGAGTGAGGACTGAGCCAGATCATGT
CAAGAAAAGGAGAAAATTAAGGAAAGAGACATGCACATAGGTCAGGGGTCACTTACAAAC
Found at i:68990331 original size:322 final size:322
Alignment explanation
Indices: 68989729--68990361 Score: 1081
Period size: 322 Copynumber: 2.0 Consensus size: 322
68989719 TGTTCTATTT
*
68989729 TCTTTTCTTTTTCCACTTGATTTCTTATATATATACATAATTAGTGATTTTTAATTAAGGTTTAA
1 TCTTTTC-TTTTCCACTTGATTTCTTATATATATACATAATTAGTAATTTTTAATTAAGGTTTAA
*
68989794 TTATACATTTTAATTATCATATTAAAACTAAGTGGGAAACCATCATCTTCCACTATCTCATGACA
65 CTATACATTTTAATTATCATATTAAAACTAAGTGGGAAACCATCATCTTCCACTATCTCATGACA
* * * * * *
68989859 AATAATGGTTAATTAACTATTTTAGTCCTTTAGATAATTGCTTTCTATGTCTTCAGGTATTTTTT
130 AAAAATGGTTAATTAACCATTTTAGTCCTTTAGATAATTGCTTTCTAAGTCCTCAAGCA-TTTTT
* * *
68989924 TTAAATTAAAATTTAATAGCGATTGGACTTTTACAATTTAGTCTATGAGCTTTAATTAGCTTTTT
194 TCAAATTAAAATTTAATAGCGATTGGACTTTTACAATTTAGTCCATGAGCTTTAAATAGCTTTTT
68989989 CTTGGTTAAATTACTAACCAAATTTCAATATATTTTCATAACAACTTCATTGAAGATGATGTTC
259 CTTGGTTAAATTACTAACCAAATTTCAATATATTTTCATAACAACTTCATTGAAGATGATGTTC
* *
68990053 TCTTTTC-TTTCCACTTGATTTCTTATATATATACATCATTAGTAATTTTTAGTTAAGGTTTAAC
1 TCTTTTCTTTTCCACTTGATTTCTTATATATATACATAATTAGTAATTTTTAATTAAGGTTTAAC
*
68990117 TATACATTTTAATTATCATATTAAAACTAAGTGGGAAACCATCATCTTCTACTATCTCATGACAA
66 TATACATTTTAATTATCATATTAAAACTAAGTGGGAAACCATCATCTTCCACTATCTCATGACAA
*
68990182 AAAATGGTTAATTAACCATTTTAGTCCTTTGGATAATTGCTTTCTAAGTCCTCAAGCA-TTTTTC
131 AAAATGGTTAATTAACCATTTTAGTCCTTTAGATAATTGCTTTCTAAGTCCTCAAGCATTTTTTC
68990246 AAATTAAAATTTAATAGCGATTGGACTTTTACAATTTAGTCCATGAGCTTTAAATAGCTATTTTC
196 AAATTAAAATTTAATAGCGATTGGACTTTTACAATTTAGTCCATGAGCTTTAAATAGCT-TTTTC
68990311 TTGGTTAAATTACTTAACCAAATTTCAATATATTTTCATAACAACTTCATT
260 TTGGTTAAATTAC-TAACCAAATTTCAATATATTTTCATAACAACTTCATT
68990362 AATCTTTATA
Statistics
Matches: 292, Mismatches: 15, Indels: 6
0.93 0.05 0.02
Matches are distributed among these distances:
320 62 0.21
321 18 0.06
322 205 0.70
324 7 0.02
ACGTcount: A:0.32, C:0.14, G:0.09, T:0.44
Consensus pattern (322 bp):
TCTTTTCTTTTCCACTTGATTTCTTATATATATACATAATTAGTAATTTTTAATTAAGGTTTAAC
TATACATTTTAATTATCATATTAAAACTAAGTGGGAAACCATCATCTTCCACTATCTCATGACAA
AAAATGGTTAATTAACCATTTTAGTCCTTTAGATAATTGCTTTCTAAGTCCTCAAGCATTTTTTC
AAATTAAAATTTAATAGCGATTGGACTTTTACAATTTAGTCCATGAGCTTTAAATAGCTTTTTCT
TGGTTAAATTACTAACCAAATTTCAATATATTTTCATAACAACTTCATTGAAGATGATGTTC
Found at i:68992305 original size:22 final size:22
Alignment explanation
Indices: 68992252--68992315 Score: 74
Period size: 22 Copynumber: 2.8 Consensus size: 22
68992242 CGGATTTTTG
* *
68992252 AAAATTATATTTAATATTTAAA
1 AAAATAATATTTAAAATTTAAA
68992274 AAAATAATATTTAAAATTTTAAA
1 AAAATAATATTTAAAA-TTTAAA
*
68992297 AAAACATATATTATAAAAT
1 AAAATA-ATATT-TAAAAT
68992316 ATTTCAAATA
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
22 14 0.39
23 11 0.31
24 6 0.17
25 5 0.14
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (22 bp):
AAAATAATATTTAAAATTTAAA
Found at i:68992307 original size:24 final size:25
Alignment explanation
Indices: 68992257--68992315 Score: 63
Period size: 23 Copynumber: 2.5 Consensus size: 25
68992247 TTTTGAAAAT
*
68992257 TATATTTAATA-TTTAAAAAAATA-
1 TATATTTAAAATTTTAAAAAAATAA
*
68992280 -ATATTTAAAATTTTAAAAAAA-CA
1 TATATTTAAAATTTTAAAAAAATAA
68992303 TATATTATAAAAT
1 TATATT-TAAAAT
68992316 ATTTCAAATA
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
22 9 0.30
23 10 0.33
24 5 0.17
25 6 0.20
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.41
Consensus pattern (25 bp):
TATATTTAAAATTTTAAAAAAATAA
Found at i:68992410 original size:19 final size:20
Alignment explanation
Indices: 68992354--68992413 Score: 72
Period size: 19 Copynumber: 3.1 Consensus size: 20
68992344 AAATCAATAA
*
68992354 AAAAATAAATAAGGACAAA-T
1 AAAAA-AAATAAGAACAAAGT
*
68992374 AAAAAAATTAAGAA-AAAGT
1 AAAAAAAATAAGAACAAAGT
68992393 AAAAAAAAT-AGAACAAAGT
1 AAAAAAAATAAGAACAAAGT
68992412 AA
1 AA
68992414 TATAGGACAA
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
18 7 0.20
19 23 0.66
20 5 0.14
ACGTcount: A:0.73, C:0.03, G:0.10, T:0.13
Consensus pattern (20 bp):
AAAAAAAATAAGAACAAAGT
Found at i:68994745 original size:19 final size:18
Alignment explanation
Indices: 68994723--68994762 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 18
68994713 TGAATAAAAC
68994723 TTATCTATCC-AAATAAGAT
1 TTATCTA-CCTAAATAA-AT
68994742 TTATCTACCTAAATAAAT
1 TTATCTACCTAAATAAAT
68994760 TTA
1 TTA
68994763 AAATATATAC
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
18 7 0.35
19 13 0.65
ACGTcount: A:0.42, C:0.15, G:0.03, T:0.40
Consensus pattern (18 bp):
TTATCTACCTAAATAAAT
Found at i:68999436 original size:19 final size:18
Alignment explanation
Indices: 68999414--68999453 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 18
68999404 TGAATAAAAC
68999414 TTATCTATCC-AAATAAGAT
1 TTATCTA-CCTAAATAA-AT
68999433 TTATCTACCTAAATAAAT
1 TTATCTACCTAAATAAAT
68999451 TTA
1 TTA
68999454 AAATATATAC
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
18 7 0.35
19 13 0.65
ACGTcount: A:0.42, C:0.15, G:0.03, T:0.40
Consensus pattern (18 bp):
TTATCTACCTAAATAAAT
Found at i:69013132 original size:27 final size:27
Alignment explanation
Indices: 69013101--69013278 Score: 196
Period size: 27 Copynumber: 6.6 Consensus size: 27
69013091 TAAATTGTAC
69013101 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
69013128 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * * *
69013154 ATGCACTAAGTGTGCAAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
69013182 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
69013210 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
69013237 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
69013264 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
69013279 GACTCAATAT
Statistics
Matches: 127, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
27 104 0.82
28 23 0.18
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:69013269 original size:82 final size:81
Alignment explanation
Indices: 69013098--69013278 Score: 220
Period size: 82 Copynumber: 2.2 Consensus size: 81
69013088 GATTAAATTG
* *
69013098 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
69013163 GTGTGCAAATTGACCA
66 GTGTGCAAATTGACCA
* * ** *
69013179 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* * **
69013243 AAGTGTGCGAGTTGATTA
64 AAGTGTGCAAATTGACCA
* *
69013261 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
69013279 GACTCAATAT
Statistics
Matches: 83, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
81 18 0.22
82 65 0.78
ACGTcount: A:0.28, C:0.15, G:0.27, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCAAATTGACCA
Found at i:69025576 original size:23 final size:23
Alignment explanation
Indices: 69025550--69025594 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
69025540 ATTTTAACCT
69025550 ATTATAAAAATATAAATATTTTA
1 ATTATAAAAATATAAATATTTTA
* * *
69025573 ATTATATAAATATGAGTATTTT
1 ATTATAAAAATATAAATATTTT
69025595 TTTAAATAAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.49, C:0.00, G:0.04, T:0.47
Consensus pattern (23 bp):
ATTATAAAAATATAAATATTTTA
Found at i:69026640 original size:17 final size:17
Alignment explanation
Indices: 69026600--69026641 Score: 57
Period size: 17 Copynumber: 2.5 Consensus size: 17
69026590 TGATATACAG
* *
69026600 TTGTATCTTTTGAATAG
1 TTGTATCTTTTGAACAA
*
69026617 TTATATCTTTTGAACAA
1 TTGTATCTTTTGAACAA
69026634 TTGTATCT
1 TTGTATCT
69026642 CTTGGTTTAA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.26, C:0.10, G:0.12, T:0.52
Consensus pattern (17 bp):
TTGTATCTTTTGAACAA
Found at i:69030061 original size:3 final size:3
Alignment explanation
Indices: 69030055--69030090 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
69030045 ACACTACTAT
69030055 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
69030091 TAGAAATACA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:69030200 original size:3 final size:3
Alignment explanation
Indices: 69030186--69030221 Score: 63
Period size: 3 Copynumber: 11.7 Consensus size: 3
69030176 AAATATACAC
69030186 TAA TATA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
69030222 TGCAGAAAGT
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
3 29 0.91
4 3 0.09
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (3 bp):
TAA
Found at i:69032718 original size:39 final size:39
Alignment explanation
Indices: 69032636--69032831 Score: 214
Period size: 39 Copynumber: 4.9 Consensus size: 39
69032626 GCTGGCTATA
* * *
69032636 TGCTGGAATTATATCAGGGCTTAAAGATCCCGCAGGCTTCG
1 TGCTGGAATTATATCCGGACTT-AAGGT-CCGCAGGCTTCG
*
69032677 TGCTGGAATTGTATCCGGACTTAAGGTCCGCAGGCTTCG
1 TGCTGGAATTATATCCGGACTTAAGGTCCGCAGGCTTCG
* * *
69032716 TGCTGGAATTGTATCCGGACTTAAGATCTGCAGGCTTCG
1 TGCTGGAATTATATCCGGACTTAAGGTCCGCAGGCTTCG
* *
69032755 TGCTGGTACTATATCCGGACTTAAGG-CCTGCAGGCTTCG
1 TGCTGGAATTATATCCGGACTTAAGGTCC-GCAGGCTTCG
* * * * * *
69032794 TACTGGTACTATATCCGGGCTTAAAGTCCCGTAGGCTT
1 TGCTGGAATTATATCCGGACTTAAGGT-CCGCAGGCTT
69032832 TGTGTTGGTG
Statistics
Matches: 137, Mismatches: 15, Indels: 7
0.86 0.09 0.04
Matches are distributed among these distances:
38 1 0.01
39 104 0.76
40 11 0.08
41 21 0.15
ACGTcount: A:0.20, C:0.23, G:0.28, T:0.29
Consensus pattern (39 bp):
TGCTGGAATTATATCCGGACTTAAGGTCCGCAGGCTTCG
Found at i:69032759 original size:78 final size:79
Alignment explanation
Indices: 69032636--69032831 Score: 245
Period size: 78 Copynumber: 2.5 Consensus size: 79
69032626 GCTGGCTATA
* * *
69032636 TGCTGGAATTATATCAGGGCTTAAAGATCCCGCAGGCTTCGTGCTGGAATTGTATCCGGACTTAA
1 TGCTGGAATTATATCCGGGCTT-AAGATCCCGCAGGCTTCGTGCTGGAACTATATCCGGACTTAA
69032701 GGTCC-GCAGGCTTCG
65 GG-CCTGCAGGCTTCG
* * * *
69032716 TGCTGGAATTGTATCCGGACTTAAGAT-CTGCAGGCTTCGTGCTGGTACTATATCCGGACTTAAG
1 TGCTGGAATTATATCCGGGCTTAAGATCCCGCAGGCTTCGTGCTGGAACTATATCCGGACTTAAG
69032780 GCCTGCAGGCTTCG
66 GCCTGCAGGCTTCG
* * * *
69032794 TACTGGTACTATATCCGGGCTTAA-AGTCCCGTAGGCTT
1 TGCTGGAATTATATCCGGGCTTAAGA-TCCCGCAGGCTT
69032832 TGTGTTGGTG
Statistics
Matches: 99, Mismatches: 14, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
77 3 0.03
78 64 0.65
79 13 0.13
80 19 0.19
ACGTcount: A:0.20, C:0.23, G:0.28, T:0.29
Consensus pattern (79 bp):
TGCTGGAATTATATCCGGGCTTAAGATCCCGCAGGCTTCGTGCTGGAACTATATCCGGACTTAAG
GCCTGCAGGCTTCG
Found at i:69035495 original size:46 final size:45
Alignment explanation
Indices: 69035437--69035703 Score: 155
Period size: 47 Copynumber: 5.7 Consensus size: 45
69035427 ATTCGTGTGT
* *
69035437 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACACTATGA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACA-GATGA
* * * **
69035483 GAGCCAGTGTAAGACCATGTCTAGGACATGGCATC-GACATTGAGACAA
1 GAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCA--CAGATGA
* * * * * *
69035531 GGGCTAGTGTAAGAC-TGTTTGGGACATGCAACGGCCTCAAGACGTA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCAC-AGATG-A
** * *
69035577 -AAACAGTGTAAGATATGTCTGGGACATGCATCGGCTACTAGATGA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCAC-AGATGA
* * * * ***
69035622 TAGTCAGTGTAAGACCATGTCTGAGACATGGCATCGACTTGAGAT-A
1 GAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCACAGATGA
* *
69035668 TGAGCCAGTATAAGACCATGTCTAGGACATGGCATC
1 -GAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATC
69035704 AGCACCTTAC
Statistics
Matches: 170, Mismatches: 39, Indels: 23
0.73 0.17 0.10
Matches are distributed among these distances:
45 18 0.11
46 61 0.36
47 63 0.37
48 27 0.16
49 1 0.01
ACGTcount: A:0.30, C:0.19, G:0.28, T:0.22
Consensus pattern (45 bp):
GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACAGATGA
Found at i:69036857 original size:21 final size:21
Alignment explanation
Indices: 69036831--69036870 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
69036821 TTGAATTGGA
*
69036831 CACACGGGGGTGTGCCCCTTT
1 CACACGGGCGTGTGCCCCTTT
69036852 CACACGGGCGTGTGCCCCT
1 CACACGGGCGTGTGCCCCT
69036871 ATGTCAAGTG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.10, C:0.38, G:0.33, T:0.20
Consensus pattern (21 bp):
CACACGGGCGTGTGCCCCTTT
Found at i:69042842 original size:26 final size:26
Alignment explanation
Indices: 69042812--69042897 Score: 68
Period size: 26 Copynumber: 3.2 Consensus size: 26
69042802 GTTTTATTTG
69042812 AATTAAAGTAATGGAATATTAAGCTC
1 AATTAAAGTAATGGAATATTAAGCTC
* * ** *
69042838 AATT-AGGTGGCAATGGTAAGT-TTTATTTG
1 AATTAAAGT---AATGG-AA-TATTAAGCTC
69042867 AATTAAAGTAATGGAATATTAAGCTC
1 AATTAAAGTAATGGAATATTAAGCTC
69042893 AATTA
1 AATTA
69042898 GGTGAACTCA
Statistics
Matches: 43, Mismatches: 10, Indels: 14
0.64 0.15 0.21
Matches are distributed among these distances:
25 4 0.09
26 15 0.35
27 5 0.12
28 5 0.12
29 10 0.23
30 4 0.09
ACGTcount: A:0.41, C:0.06, G:0.19, T:0.35
Consensus pattern (26 bp):
AATTAAAGTAATGGAATATTAAGCTC
Found at i:69042864 original size:55 final size:55
Alignment explanation
Indices: 69042791--69042901 Score: 222
Period size: 55 Copynumber: 2.0 Consensus size: 55
69042781 TTTCGTAAGG
69042791 GGCAATGGTAAGTTTTATTTGAATTAAAGTAATGGAATATTAAGCTCAATTAGGT
1 GGCAATGGTAAGTTTTATTTGAATTAAAGTAATGGAATATTAAGCTCAATTAGGT
69042846 GGCAATGGTAAGTTTTATTTGAATTAAAGTAATGGAATATTAAGCTCAATTAGGT
1 GGCAATGGTAAGTTTTATTTGAATTAAAGTAATGGAATATTAAGCTCAATTAGGT
69042901 G
1 G
69042902 AACTCATCAT
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
55 56 1.00
ACGTcount: A:0.36, C:0.05, G:0.23, T:0.36
Consensus pattern (55 bp):
GGCAATGGTAAGTTTTATTTGAATTAAAGTAATGGAATATTAAGCTCAATTAGGT
Found at i:69045115 original size:31 final size:31
Alignment explanation
Indices: 69045072--69045134 Score: 90
Period size: 31 Copynumber: 2.0 Consensus size: 31
69045062 AAAGTACAAC
69045072 AAAACATTAATTACAATAAAGAGTAAAAAGG
1 AAAACATTAATTACAATAAAGAGTAAAAAGG
* * * *
69045103 AAAATATTAATTATAGTAAAGATTAAAAAGG
1 AAAACATTAATTACAATAAAGAGTAAAAAGG
69045134 A
1 A
69045135 TGGTTTAAGG
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.60, C:0.03, G:0.13, T:0.24
Consensus pattern (31 bp):
AAAACATTAATTACAATAAAGAGTAAAAAGG
Found at i:69045306 original size:36 final size:36
Alignment explanation
Indices: 69045256--69045329 Score: 130
Period size: 36 Copynumber: 2.1 Consensus size: 36
69045246 CATTAACTTT
69045256 AACTTTCAGCATTTTTATATTGAAAAAAATCAAATC
1 AACTTTCAGCATTTTTATATTGAAAAAAATCAAATC
* *
69045292 AACTTTCAGTATTTTTATATTGAAAAAATTCAAATC
1 AACTTTCAGCATTTTTATATTGAAAAAAATCAAATC
69045328 AA
1 AA
69045330 AACATATTCT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.45, C:0.12, G:0.05, T:0.38
Consensus pattern (36 bp):
AACTTTCAGCATTTTTATATTGAAAAAAATCAAATC
Found at i:69046234 original size:51 final size:51
Alignment explanation
Indices: 69046179--69046314 Score: 182
Period size: 51 Copynumber: 2.7 Consensus size: 51
69046169 TGGAAACATT
*
69046179 ATCTTAAAAGATATGATTTTATAATCTTAGAGATCTTAGATATGAAATGTA
1 ATCTTAAAAGATATGATTTTATAATCTTAGAGATCTTAGATAAGAAATGTA
* * ** * * *
69046230 ATCTTATAAGATATTATTTTATAAGATTACATATCTTAGATAAGATATGTA
1 ATCTTAAAAGATATGATTTTATAATCTTAGAGATCTTAGATAAGAAATGTA
* *
69046281 ATCTTAGAAGATATGATTTTATATTCTTAGAGAT
1 ATCTTAAAAGATATGATTTTATAATCTTAGAGAT
69046315 TTGATTGTAG
Statistics
Matches: 70, Mismatches: 15, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
51 70 1.00
ACGTcount: A:0.40, C:0.06, G:0.12, T:0.42
Consensus pattern (51 bp):
ATCTTAAAAGATATGATTTTATAATCTTAGAGATCTTAGATAAGAAATGTA
Found at i:69051436 original size:51 final size:51
Alignment explanation
Indices: 69051381--69051516 Score: 191
Period size: 51 Copynumber: 2.7 Consensus size: 51
69051371 TGGAAACATT
*
69051381 ATCTTAAAAGATATGATTTTATAATCTTAGAGATCTTAGATATGATATGTA
1 ATCTTAAAAGATATGATTTTATAATCTTAGAGATCTTAGATAAGATATGTA
* * ** * *
69051432 ATCTTATAAGATATTATTTTATAAGATTACATATCTTAGATAAGATATGTA
1 ATCTTAAAAGATATGATTTTATAATCTTAGAGATCTTAGATAAGATATGTA
* *
69051483 ATCTTAGAAGATATGATTTTATATTCTTAGAGAT
1 ATCTTAAAAGATATGATTTTATAATCTTAGAGAT
69051517 TTGATTGTAG
Statistics
Matches: 71, Mismatches: 14, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
51 71 1.00
ACGTcount: A:0.39, C:0.06, G:0.12, T:0.43
Consensus pattern (51 bp):
ATCTTAAAAGATATGATTTTATAATCTTAGAGATCTTAGATAAGATATGTA
Found at i:69051486 original size:19 final size:19
Alignment explanation
Indices: 69051413--69051490 Score: 62
Period size: 19 Copynumber: 4.4 Consensus size: 19
69051403 AATCTTAGAG
*
69051413 ATCTTAGATATGATATGTA
1 ATCTTAGATAAGATATGTA
69051432 ATCTT--ATAAGATAT-T-
1 ATCTTAGATAAGATATGTA
* **
69051447 AT-TT-TATAAGAT-TACA
1 ATCTTAGATAAGATATGTA
69051463 TATCTTAGATAAGATATGTA
1 -ATCTTAGATAAGATATGTA
69051483 ATCTTAGA
1 ATCTTAGA
69051491 AGATATGATT
Statistics
Matches: 47, Mismatches: 5, Indels: 14
0.71 0.08 0.21
Matches are distributed among these distances:
14 3 0.06
15 9 0.19
16 1 0.02
17 10 0.21
18 2 0.04
19 20 0.43
20 2 0.04
ACGTcount: A:0.40, C:0.06, G:0.12, T:0.42
Consensus pattern (19 bp):
ATCTTAGATAAGATATGTA
Found at i:69059534 original size:11 final size:11
Alignment explanation
Indices: 69059518--69059661 Score: 56
Period size: 11 Copynumber: 14.5 Consensus size: 11
69059508 AAAATTAATT
69059518 AAAATATTATA
1 AAAATATTATA
*
69059529 AAAATA-TATTG
1 AAAATATTA-TA
*
69059540 AAAATTTTATA
1 AAAATATTATA
*
69059551 AAATTA-T-TA
1 AAAATATTATA
* *
69059560 GATAT-TTATA
1 AAAATATTATA
69059570 AAAA-A-TATA
1 AAAATATTATA
69059579 AAAATATT-T-
1 AAAATATTATA
*
69059588 -AAATTTTATTA
1 AAAATATTA-TA
69059599 AAAAT-TTA-A
1 AAAATATTATA
69059608 AAAATA-T-T-
1 AAAATATTATA
69059616 AAAA-ATT-TA
1 AAAATATTATA
69059625 AAAATA-TATA
1 AAAATATTATA
*
69059635 GAAAT-TTATTA
1 AAAATATTA-TA
69059646 AAAACTA-TATA
1 AAAA-TATTATA
69059657 AAAAT
1 AAAAT
69059662 CGTTACAAAA
Statistics
Matches: 99, Mismatches: 13, Indels: 43
0.64 0.08 0.28
Matches are distributed among these distances:
7 1 0.01
8 12 0.12
9 25 0.25
10 20 0.20
11 32 0.32
12 9 0.09
ACGTcount: A:0.59, C:0.01, G:0.02, T:0.38
Consensus pattern (11 bp):
AAAATATTATA
Found at i:69059553 original size:21 final size:20
Alignment explanation
Indices: 69059506--69059633 Score: 90
Period size: 19 Copynumber: 6.5 Consensus size: 20
69059496 ATTTTAATCA
*
69059506 ATAAAAT-TAATTAAAATATT
1 ATAAAATAT-ATTAAAATTTT
69059526 ATAAAAATATATTGAAAATTTT
1 AT-AAAATATATT-AAAATTTT
*
69059548 ATAAAAT-TATT-AGATATTT
1 ATAAAATATATTAAAAT-TTT
* * *
69059567 ATAAAAAATATAAAAATATT
1 ATAAAATATATTAAAATTTT
* * *
69059587 -TAAATTTTATTAAAAATTT
1 ATAAAATATATTAAAATTTT
*
69059606 A-AAAA-ATATTAAAAATTT
1 ATAAAATATATTAAAATTTT
69059624 A-AAAATATAT
1 ATAAAATATAT
69059634 AGAAATTTAT
Statistics
Matches: 86, Mismatches: 14, Indels: 17
0.74 0.12 0.15
Matches are distributed among these distances:
18 20 0.23
19 29 0.34
20 11 0.13
21 16 0.19
22 10 0.12
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.40
Consensus pattern (20 bp):
ATAAAATATATTAAAATTTT
Found at i:69059582 original size:29 final size:29
Alignment explanation
Indices: 69059550--69059647 Score: 94
Period size: 28 Copynumber: 3.4 Consensus size: 29
69059540 AAAATTTTAT
*
69059550 AAAATTATTAGATATTTATAAAAAATATA
1 AAAATTATTAAATATTTATAAAAAATATA
* *
69059579 AAAA-TATTTAAAT-TTTATTAAAAATTTA
1 AAAATTA-TTAAATATTTATAAAAAATATA
* * *
69059607 AAAAATATTAAAAATTTA-AAAATATATA
1 AAAATTATTAAATATTTATAAAAAATATA
*
69059635 GAAATTTATTAAA
1 -AAAATTATTAAA
69059648 AACTATATAA
Statistics
Matches: 56, Mismatches: 9, Indels: 8
0.77 0.12 0.11
Matches are distributed among these distances:
28 31 0.55
29 25 0.45
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (29 bp):
AAAATTATTAAATATTTATAAAAAATATA
Found at i:69059607 original size:18 final size:18
Alignment explanation
Indices: 69059515--69059661 Score: 89
Period size: 18 Copynumber: 7.5 Consensus size: 18
69059505 AATAAAATTA
69059515 ATTAAAATATTATAAAAATAT
1 ATTAAAA-ATT-TAAAAA-AT
* *
69059536 ATTGAAAATTTTATAAAATT
1 ATT-AAAAATTTA-AAAAAT
* *
69059556 ATTAGATATTTATAAAAAAT
1 ATTA-AAAATT-TAAAAAAT
* ***
69059576 ATAAAAATATTTAAATTTT
1 ATTAAAA-ATTTAAAAAAT
69059595 ATTAAAAATTTAAAAAAT
1 ATTAAAAATTTAAAAAAT
69059613 ATTAAAAATTT-AAAAAT
1 ATTAAAAATTTAAAAAAT
*
69059630 ATATAGAAATTTATTAAAAACT
1 AT-TAAAAATTTA--AAAAA-T
69059652 ATATAAAAAT
1 AT-TAAAAAT
69059662 CGTTACAAAA
Statistics
Matches: 100, Mismatches: 16, Indels: 19
0.74 0.12 0.14
Matches are distributed among these distances:
17 8 0.08
18 27 0.27
19 14 0.14
20 21 0.21
21 16 0.16
22 14 0.14
ACGTcount: A:0.59, C:0.01, G:0.02, T:0.39
Consensus pattern (18 bp):
ATTAAAAATTTAAAAAAT
Found at i:69059706 original size:22 final size:23
Alignment explanation
Indices: 69059674--69059716 Score: 79
Period size: 22 Copynumber: 1.9 Consensus size: 23
69059664 TTACAAAATA
69059674 TAAAAGATATAGAAAAATTATTT
1 TAAAAGATATAGAAAAATTATTT
69059697 TAAAA-ATATAGAAAAATTAT
1 TAAAAGATATAGAAAAATTAT
69059717 AAAAAAATAA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
22 15 0.75
23 5 0.25
ACGTcount: A:0.60, C:0.00, G:0.07, T:0.33
Consensus pattern (23 bp):
TAAAAGATATAGAAAAATTATTT
Found at i:69059723 original size:22 final size:22
Alignment explanation
Indices: 69059675--69059723 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
69059665 TACAAAATAT
* **
69059675 AAAAGATATAGAAAAATTATTT
1 AAAAAATATAGAAAAATTATAA
*
69059697 TAAAAATATAGAAAAATTATAA
1 AAAAAATATAGAAAAATTATAA
69059719 AAAAA
1 AAAAA
69059724 TAACTTTAGT
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.67, C:0.00, G:0.06, T:0.27
Consensus pattern (22 bp):
AAAAAATATAGAAAAATTATAA
Found at i:69060482 original size:24 final size:24
Alignment explanation
Indices: 69060434--69060482 Score: 64
Period size: 24 Copynumber: 2.0 Consensus size: 24
69060424 AATTTTTTAA
**
69060434 TTTTATTTAATATTAATATGAATT
1 TTTTATTTAATATTAATAAAAATT
69060458 TTTTATTTAATATT-ATAAAATATT
1 TTTTATTTAATATTAATAAAA-ATT
69060482 T
1 T
69060483 ATGTTTTTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
23 4 0.18
24 18 0.82
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (24 bp):
TTTTATTTAATATTAATAAAAATT
Found at i:69064726 original size:11 final size:11
Alignment explanation
Indices: 69064710--69064762 Score: 56
Period size: 11 Copynumber: 4.9 Consensus size: 11
69064700 TAAGTTCTTG
69064710 AAAAAATTTCA
1 AAAAAATTTCA
*
69064721 AAAAAA-TTGA
1 AAAAAATTTCA
**
69064731 AAAAAATTAGA
1 AAAAAATTTCA
69064742 AAAAAA-TTCAA
1 AAAAAATTTC-A
69064753 AAAAAATTTC
1 AAAAAATTTC
69064763 GAAACAAAAA
Statistics
Matches: 35, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
10 10 0.29
11 22 0.63
12 3 0.09
ACGTcount: A:0.68, C:0.06, G:0.04, T:0.23
Consensus pattern (11 bp):
AAAAAATTTCA
Found at i:69064757 original size:10 final size:10
Alignment explanation
Indices: 69064710--69064757 Score: 60
Period size: 10 Copynumber: 4.7 Consensus size: 10
69064700 TAAGTTCTTG
*
69064710 AAAAAATTTC
1 AAAAAAATTC
*
69064720 AAAAAAATTG
1 AAAAAAATTC
*
69064730 AAAAAAATTAG
1 AAAAAAATT-C
69064741 AAAAAAATTC
1 AAAAAAATTC
69064751 AAAAAAA
1 AAAAAAA
69064758 ATTTCGAAAC
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
10 24 0.71
11 10 0.29
ACGTcount: A:0.73, C:0.04, G:0.04, T:0.19
Consensus pattern (10 bp):
AAAAAAATTC
Found at i:69066018 original size:18 final size:20
Alignment explanation
Indices: 69065997--69066042 Score: 62
Period size: 18 Copynumber: 2.5 Consensus size: 20
69065987 GCATGTGACC
69065997 AAGAAAAGA-AAATTGAA-A
1 AAGAAAAGAGAAATTGAAGA
*
69066015 AAG-AGAGAGAAATTGAAGA
1 AAGAAAAGAGAAATTGAAGA
69066034 AAGAAAAGA
1 AAGAAAAGA
69066043 TAGTGAGCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
17 4 0.17
18 11 0.48
19 4 0.17
20 4 0.17
ACGTcount: A:0.67, C:0.00, G:0.24, T:0.09
Consensus pattern (20 bp):
AAGAAAAGAGAAATTGAAGA
Found at i:69066174 original size:15 final size:15
Alignment explanation
Indices: 69066154--69066198 Score: 56
Period size: 15 Copynumber: 3.1 Consensus size: 15
69066144 AAATGAGTTA
*
69066154 GAAAAAGAAACGAGT
1 GAAAAAGAAACAAGT
*
69066169 GAAAAAGATACAAGT
1 GAAAAAGAAACAAGT
*
69066184 GAACAAGAAA-AAGT
1 GAAAAAGAAACAAGT
69066198 G
1 G
69066199 TAACACCCCA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
14 5 0.19
15 21 0.81
ACGTcount: A:0.60, C:0.07, G:0.24, T:0.09
Consensus pattern (15 bp):
GAAAAAGAAACAAGT
Found at i:69067363 original size:27 final size:27
Alignment explanation
Indices: 69067332--69067408 Score: 102
Period size: 27 Copynumber: 2.9 Consensus size: 27
69067322 GTGCAAAACA
69067332 ATCATTTTAC-CTTACAAGGGTATGTCG
1 ATCATTTTACAC-TACAAGGGTATGTCG
* *
69067359 GTCATTTTACACTACAAGGGTATTTCG
1 ATCATTTTACACTACAAGGGTATGTCG
* *
69067386 ATAATTTTACACTATAAGGGTAT
1 ATCATTTTACACTACAAGGGTAT
69067409 TTTAATAATT
Statistics
Matches: 44, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
27 43 0.98
28 1 0.02
ACGTcount: A:0.30, C:0.16, G:0.17, T:0.38
Consensus pattern (27 bp):
ATCATTTTACACTACAAGGGTATGTCG
Found at i:69067409 original size:27 final size:27
Alignment explanation
Indices: 69067375--69067878 Score: 585
Period size: 27 Copynumber: 18.7 Consensus size: 27
69067365 TTACACTACA
* *
69067375 AGGGTATTTCGATAATTTTACACTAT-A
1 AGGGTATTTCGATAATTTTACA-AATCG
** *
69067402 AGGGTATTTTAATAATTTTACAAATTG
1 AGGGTATTTCGATAATTTTACAAATCG
* *
69067429 AGGGTGTTTCGGTAATTTTACAAATCG
1 AGGGTATTTCGATAATTTTACAAATCG
**
69067456 AGGGTATTTTAATAATTTTACAAATCG
1 AGGGTATTTCGATAATTTTACAAATCG
69067483 AGGGTATTTCGATAATTTTACAAATCG
1 AGGGTATTTCGATAATTTTACAAATCG
*
69067510 AGGGTGTTTCGATAATTTTACAAATCG
1 AGGGTATTTCGATAATTTTACAAATCG
* *
69067537 AGGATGTTTC-AGTAATTTTACAAATCG
1 AGGGTATTTCGA-TAATTTTACAAATCG
*
69067564 AGGGTGTTTC-AGTAATTTTACAAATCG
1 AGGGTATTTCGA-TAATTTTACAAATCG
* * * * *
69067591 AGAGTGTTCCGATAATTTCACAAAT-T
1 AGGGTATTTCGATAATTTTACAAATCG
69067617 AGGGGTATTTCGATAATTTTACAAATCG
1 A-GGGTATTTCGATAATTTTACAAATCG
* *
69067645 AGGCTATTTCGGTAATTTTACAAATCG
1 AGGGTATTTCGATAATTTTACAAATCG
* *
69067672 AGGGTGTTTTGATAATTTTACAAATCG
1 AGGGTATTTCGATAATTTTACAAATCG
* * * * *
69067699 AGGGTGTTTCGGTAATTTCACAAGTCA
1 AGGGTATTTCGATAATTTTACAAATCG
69067726 AGGGTATTTCGATAATTTTACAAATCG
1 AGGGTATTTCGATAATTTTACAAATCG
* *
69067753 AGGATATTTC-AGTAATTTCAC-AATCG
1 AGGGTATTTCGA-TAATTTTACAAATCG
*
69067779 AGGGTATTTC-AGTAATTTTACAAAT-T
1 AGGGTATTTCGA-TAATTTTACAAATCG
69067805 AGGGGTATTTCGATAATTTTACAAATCG
1 A-GGGTATTTCGATAATTTTACAAATCG
*
69067833 AGGGTATTTCGATAATTTTACAAA-CA
1 AGGGTATTTCGATAATTTTACAAATCG
*
69067859 AGGGGCATTTCGATAATTTT
1 A-GGGTATTTCGATAATTTT
69067879 TCTTTATTAT
Statistics
Matches: 415, Mismatches: 51, Indels: 22
0.85 0.10 0.05
Matches are distributed among these distances:
26 32 0.08
27 379 0.91
28 4 0.01
ACGTcount: A:0.32, C:0.11, G:0.19, T:0.38
Consensus pattern (27 bp):
AGGGTATTTCGATAATTTTACAAATCG
Found at i:69070788 original size:27 final size:27
Alignment explanation
Indices: 69070758--69070819 Score: 97
Period size: 27 Copynumber: 2.3 Consensus size: 27
69070748 TATGTCGGTC
* *
69070758 ATTTTACACTATAAGGGAATTTTGATA
1 ATTTTACACTACAAGGGAATTTCGATA
*
69070785 ATTTTACACTACAAGGGTATTTCGATA
1 ATTTTACACTACAAGGGAATTTCGATA
69070812 ATTTTACA
1 ATTTTACA
69070820 AATTGAGGGT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.35, C:0.11, G:0.13, T:0.40
Consensus pattern (27 bp):
ATTTTACACTACAAGGGAATTTCGATA
Found at i:69070828 original size:27 final size:27
Alignment explanation
Indices: 69070771--69071244 Score: 414
Period size: 27 Copynumber: 17.7 Consensus size: 27
69070761 TTACACTATA
* * * *
69070771 AGGGAATTTTGATAATTTTAC-ACTACA
1 AGGGTATTTCGATAATTTTACAAAT-CG
*
69070798 AGGGTATTTCGATAATTTTACAAATTG
1 AGGGTATTTCGATAATTTTACAAATCG
* *
69070825 AGGGTGTTTCCG-TAATTTTACAAATTG
1 AGGGTATTT-CGATAATTTTACAAATCG
69070852 AGGGTATTTCGATAATTTTACAAATCG
1 AGGGTATTTCGATAATTTTACAAATCG
* * **
69070879 AGAGT-TTTCGATAATTTTAAAAATTA
1 AGGGTATTTCGATAATTTTACAAATCG
*
69070905 AGGGTGTTTC-AGTAATTTTACAAATCG
1 AGGGTATTTCGA-TAATTTTACAAATCG
* * *
69070932 AGGGTGTTTC-AGTAATTTTATAAATTG
1 AGGGTATTTCGA-TAATTTTACAAATCG
* * *
69070959 AGGATGTTTC-AGTAATTTCACAAATCG
1 AGGGTATTTCGA-TAATTTTACAAATCG
* *
69070986 GGGGTATTTC-AGTAATTTTACAAATCA
1 AGGGTATTTCGA-TAATTTTACAAATCG
69071013 AGGGTATTTCGATAATTTTACAAATCG
1 AGGGTATTTCGATAATTTTACAAATCG
* *
69071040 AGGGTGTTTCGGTAATTTTACAAATCG
1 AGGGTATTTCGATAATTTTACAAATCG
* * * * *
69071067 AGGGTGTGTCGTTAATTTCATAAATCG
1 AGGGTATTTCGATAATTTTACAAATCG
* * * *
69071094 GGGGTATTTTGATAATTTTTCAAATCA
1 AGGGTATTTCGATAATTTTACAAATCG
** * *
69071121 AGGGTATTTAAATAATTTCAC-AGTCG
1 AGGGTATTTCGATAATTTTACAAATCG
**
69071147 AGGGTATTTCGATAATTTTACAAATTA
1 AGGGTATTTCGATAATTTTACAAATCG
*
69071174 AAGGTATTTC-AGTAATTTTACAAATCG
1 AGGGTATTTCGA-TAATTTTACAAATCG
* *
69071201 A-GATATTTCGGTAATTTTACAAA-CTG
1 AGGGTATTTCGATAATTTTACAAATC-G
*
69071227 GGGGTATTTCCG-TAATTT
1 AGGGTATTT-CGATAATTT
69071245 CTCTTTATTA
Statistics
Matches: 371, Mismatches: 64, Indels: 24
0.81 0.14 0.05
Matches are distributed among these distances:
25 1 0.00
26 67 0.18
27 296 0.80
28 7 0.02
ACGTcount: A:0.32, C:0.10, G:0.19, T:0.39
Consensus pattern (27 bp):
AGGGTATTTCGATAATTTTACAAATCG
Found at i:69074121 original size:27 final size:27
Alignment explanation
Indices: 69074104--69074192 Score: 178
Period size: 27 Copynumber: 3.3 Consensus size: 27
69074094 TATGTCGGTC
69074104 ATTTTACACTACAAGGGTATTTTGATA
1 ATTTTACACTACAAGGGTATTTTGATA
69074131 ATTTTACACTACAAGGGTATTTTGATA
1 ATTTTACACTACAAGGGTATTTTGATA
69074158 ATTTTACACTACAAGGGTATTTTGATA
1 ATTTTACACTACAAGGGTATTTTGATA
69074185 ATTTTACA
1 ATTTTACA
69074193 AATCGAGGGT
Statistics
Matches: 62, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 62 1.00
ACGTcount: A:0.34, C:0.11, G:0.13, T:0.42
Consensus pattern (27 bp):
ATTTTACACTACAAGGGTATTTTGATA
Found at i:69074135 original size:54 final size:54
Alignment explanation
Indices: 69074077--69074192 Score: 169
Period size: 54 Copynumber: 2.1 Consensus size: 54
69074067 CAAAAAAATC
* * * * *
69074077 ATTTTACCCTATAGGGGTATGTCGGTCATTTTACACTACAAGGGTATTTTGATA
1 ATTTTACACTACAAGGGTATGTCGATAATTTTACACTACAAGGGTATTTTGATA
* *
69074131 ATTTTACACTACAAGGGTATTTTGATAATTTTACACTACAAGGGTATTTTGATA
1 ATTTTACACTACAAGGGTATGTCGATAATTTTACACTACAAGGGTATTTTGATA
69074185 ATTTTACA
1 ATTTTACA
69074193 AATCGAGGGT
Statistics
Matches: 55, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
54 55 1.00
ACGTcount: A:0.30, C:0.13, G:0.16, T:0.41
Consensus pattern (54 bp):
ATTTTACACTACAAGGGTATGTCGATAATTTTACACTACAAGGGTATTTTGATA
Found at i:69074201 original size:27 final size:27
Alignment explanation
Indices: 69074104--69074233 Score: 156
Period size: 27 Copynumber: 4.8 Consensus size: 27
69074094 TATGTCGGTC
*
69074104 ATTTTACACTACAAGGGTATTTTGATA
1 ATTTTACAATACAAGGGTATTTTGATA
*
69074131 ATTTTACACTACAAGGGTATTTTGATA
1 ATTTTACAATACAAGGGTATTTTGATA
*
69074158 ATTTTACACTACAAGGGTATTTTGATA
1 ATTTTACAATACAAGGGTATTTTGATA
* * * *
69074185 ATTTTACAA-ATCGAGGGTGTTTCGGTA
1 ATTTTACAATA-CAAGGGTATTTTGATA
*
69074212 ATTTTA-AAAATCAAGGGTATTT
1 ATTTTACAATA-CAAGGGTATTT
69074234 GTAACACCCT
Statistics
Matches: 94, Mismatches: 7, Indels: 4
0.90 0.07 0.04
Matches are distributed among these distances:
26 3 0.03
27 91 0.97
ACGTcount: A:0.33, C:0.10, G:0.17, T:0.40
Consensus pattern (27 bp):
ATTTTACAATACAAGGGTATTTTGATA
Found at i:69075843 original size:29 final size:29
Alignment explanation
Indices: 69075809--69075882 Score: 96
Period size: 29 Copynumber: 2.6 Consensus size: 29
69075799 TAATCAACCG
*
69075809 CGCACACTTAGTGCCATGTACTTT-AAACT
1 CGCACACTTAGTGCCATGCA-TTTCAAACT
**
69075838 CGCACACTTAGTGCCATGCATTTCAAGTT
1 CGCACACTTAGTGCCATGCATTTCAAACT
*
69075867 CGCACACCTAGTGCCA
1 CGCACACTTAGTGCCA
69075883 ATCTCACAAC
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
28 3 0.08
29 37 0.93
ACGTcount: A:0.26, C:0.31, G:0.16, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCATTTCAAACT
Found at i:69077610 original size:27 final size:27
Alignment explanation
Indices: 69077570--69078014 Score: 390
Period size: 27 Copynumber: 16.6 Consensus size: 27
69077560 GGCTATCACA
*
69077570 GTATTTCGGTAATTTTACAAATCGAGG
1 GTATTTCGATAATTTTACAAATCGAGG
* *
69077597 GCATTTCGATAATTTTACAAATTGAGG
1 GTATTTCGATAATTTTACAAATCGAGG
* *
69077624 GTGTTTCAATAATTTTACAAATCGAGG
1 GTATTTCGATAATTTTACAAATCGAGG
* * *
69077651 GTGTTTTGGTAATTTTACAAATCGAGG
1 GTATTTCGATAATTTTACAAATCGAGG
* ** *
69077678 GTGTTTC-AGTAATTTTACAAATTTAGT
1 GTATTTCGA-TAATTTTACAAATCGAGG
*
69077705 GTGTTTCGATAATTTTACAAATCGAGG
1 GTATTTCGATAATTTTACAAATCGAGG
* *
69077732 GTGTTTC-AGTAATTTCACAAATCG-GAG
1 GTATTTCGA-TAATTTTACAAATCGAG-G
* *
69077759 GTATTTCGGTAATTTTACAAATCGAAG
1 GTATTTCGATAATTTTACAAATCGAGG
*
69077786 GTATTTCGATAATTTTATAAATCGAGG
1 GTATTTCGATAATTTTACAAATCGAGG
* * * *
69077813 GTGTTT-TAGTAATTTTACAAATTGATG
1 GTATTTCGA-TAATTTTACAAATCGAGG
*
69077840 GTGTTTC-AGT-ATTTTCACAAATCG-GG
1 GTATTTCGA-TAATTTT-ACAAATCGAGG
* * * *
69077866 GGATTTTGGTAATTTTACAAATCAAGG
1 GTATTTCGATAATTTTACAAATCGAGG
* * *
69077893 GTATTTC-AGTAATTTCAC-AGTTGAGG
1 GTATTTCGA-TAATTTTACAAATCGAGG
* *
69077919 GTATTTTGGTAATTTTACAAATC-AGGG
1 GTATTTCGATAATTTTACAAATCGA-GG
* *
69077946 GTATTTCGATAATTTTACTAA-CTGGGG
1 GTATTTCGATAATTTTACAAATC-GAGG
* * *
69077973 GTGTTTCGGTAATTTTACAAATCGGGG
1 GTATTTCGATAATTTTACAAATCGAGG
*
69078000 GTATTTCGGTAATTT
1 GTATTTCGATAATTT
69078015 CTCTTTATTA
Statistics
Matches: 341, Mismatches: 58, Indels: 38
0.78 0.13 0.09
Matches are distributed among these distances:
26 42 0.12
27 297 0.87
28 2 0.01
ACGTcount: A:0.29, C:0.10, G:0.21, T:0.40
Consensus pattern (27 bp):
GTATTTCGATAATTTTACAAATCGAGG
Found at i:69077664 original size:54 final size:54
Alignment explanation
Indices: 69077573--69078014 Score: 452
Period size: 54 Copynumber: 8.2 Consensus size: 54
69077563 TATCACAGTA
* ** * *
69077573 TTTCGGTAATTTTACAAATCGAGGGCATTTCGATAATTTTACAAATTGAGGGTG
1 TTTCAGTAATTTTACAAATCGAGGGTGTTTCGGTAATTTTACAAATCGAGGGTG
* *
69077627 TTTCAATAATTTTACAAATCGAGGGTGTTTTGGTAATTTTACAAATCGAGGGTG
1 TTTCAGTAATTTTACAAATCGAGGGTGTTTCGGTAATTTTACAAATCGAGGGTG
** * *
69077681 TTTCAGTAATTTTACAAATTTAGTGTGTTTCGATAATTTTACAAATCGAGGGTG
1 TTTCAGTAATTTTACAAATCGAGGGTGTTTCGGTAATTTTACAAATCGAGGGTG
* * * *
69077735 TTTCAGTAATTTCACAAATCG-GAGGTATTTCGGTAATTTTACAAATCGAAGGTA
1 TTTCAGTAATTTTACAAATCGAG-GGTGTTTCGGTAATTTTACAAATCGAGGGTG
* ** * *
69077789 TTTC-GATAATTTTATAAATCGAGGGTGTTTTAGTAATTTTACAAATTGATGGTG
1 TTTCAG-TAATTTTACAAATCGAGGGTGTTTCGGTAATTTTACAAATCGAGGGTG
* * *
69077843 TTTCAGT-ATTTTCACAAATCG-GGG-GATTTTGGTAATTTTACAAATCAAGGGTA
1 TTTCAGTAATTTT-ACAAATCGAGGGTG-TTTCGGTAATTTTACAAATCGAGGGTG
* * * * * *
69077896 TTTCAGTAATTTCAC-AGTTGAGGGTATTTTGGTAATTTTACAAATC-AGGGGTA
1 TTTCAGTAATTTTACAAATCGAGGGTGTTTCGGTAATTTTACAAATCGA-GGGTG
* * * *
69077949 TTTC-GATAATTTTACTAA-CTGGGGGTGTTTCGGTAATTTTACAAATCGGGGGTA
1 TTTCAG-TAATTTTACAAATC-GAGGGTGTTTCGGTAATTTTACAAATCGAGGGTG
*
69078003 TTTCGGTAATTT
1 TTTCAGTAATTT
69078015 CTCTTTATTA
Statistics
Matches: 327, Mismatches: 46, Indels: 30
0.81 0.11 0.07
Matches are distributed among these distances:
52 6 0.02
53 81 0.25
54 237 0.72
55 3 0.01
ACGTcount: A:0.29, C:0.10, G:0.21, T:0.40
Consensus pattern (54 bp):
TTTCAGTAATTTTACAAATCGAGGGTGTTTCGGTAATTTTACAAATCGAGGGTG
Found at i:69077717 original size:81 final size:81
Alignment explanation
Indices: 69077573--69078014 Score: 457
Period size: 81 Copynumber: 5.5 Consensus size: 81
69077563 TATCACAGTA
* * * * *
69077573 TTTCGGTAATTTTACAAATCGAGGGCATTTCGATAATTTTACAAATTGAGGGTGTTTCAATAATT
1 TTTCAGTAATTTTACAAATCGAGGGTATTTCGGTAATTTTACAAATTTAGGGTGTTTCGATAATT
69077638 TTACAAATCGAGGGTG
66 TTACAAATCGAGGGTG
** * * *
69077654 TTTTGGTAATTTTACAAATCGAGGGTGTTTCAGTAATTTTACAAATTTAGTGTGTTTCGATAATT
1 TTTCAGTAATTTTACAAATCGAGGGTATTTCGGTAATTTTACAAATTTAGGGTGTTTCGATAATT
69077719 TTACAAATCGAGGGTG
66 TTACAAATCGAGGGTG
* ** * *
69077735 TTTCAGTAATTTCACAAATCG-GAGGTATTTCGGTAATTTTACAAATCGAAGGTATTTCGATAAT
1 TTTCAGTAATTTTACAAATCGAG-GGTATTTCGGTAATTTTACAAATTTAGGGTGTTTCGATAAT
*
69077799 TTTATAAATCGAGGGTG
65 TTTACAAATCGAGGGTG
* * * * * * * * *
69077816 TTTTAGTAATTTTACAAATTGATGGTGTTTCAGT-ATTTTCACAAA--TCGGGGGATTTTGGTAA
1 TTTCAGTAATTTTACAAATCGAGGGTATTTCGGTAATTTT-ACAAATTTAGGGTG-TTTCGATAA
* *
69077878 TTTTACAAATCAAGGGTA
64 TTTTACAAATCGAGGGTG
* * * * * *
69077896 TTTCAGTAATTTCAC-AGTTGAGGGTATTTTGGTAATTTTACAAA-TCAGGGGTATTTCGATAAT
1 TTTCAGTAATTTTACAAATCGAGGGTATTTCGGTAATTTTACAAATTTA-GGGTGTTTCGATAAT
* *
69077959 TTTACTAA-CTGGGGGTG
65 TTTACAAATC-GAGGGTG
* *
69077976 TTTCGGTAATTTTACAAATCGGGGGTATTTCGGTAATTT
1 TTTCAGTAATTTTACAAATCGAGGGTATTTCGGTAATTT
69078015 CTCTTTATTA
Statistics
Matches: 294, Mismatches: 58, Indels: 18
0.79 0.16 0.05
Matches are distributed among these distances:
79 21 0.07
80 78 0.27
81 195 0.66
ACGTcount: A:0.29, C:0.10, G:0.21, T:0.40
Consensus pattern (81 bp):
TTTCAGTAATTTTACAAATCGAGGGTATTTCGGTAATTTTACAAATTTAGGGTGTTTCGATAATT
TTACAAATCGAGGGTG
Found at i:69078428 original size:28 final size:28
Alignment explanation
Indices: 69078343--69078420 Score: 120
Period size: 28 Copynumber: 2.8 Consensus size: 28
69078333 GCCCAATCTC
* *
69078343 ATTCACATGGCCCATCAGGCCCCATCAT
1 ATTCATATGGCCCATCAAGCCCCATCAT
*
69078371 ATTCATATGGCCAATCAAGCCCCATCAT
1 ATTCATATGGCCCATCAAGCCCCATCAT
*
69078399 ATTCATATGGCCCATCACGCCC
1 ATTCATATGGCCCATCAAGCCC
69078421 TATAATATCC
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 45 1.00
ACGTcount: A:0.27, C:0.37, G:0.13, T:0.23
Consensus pattern (28 bp):
ATTCATATGGCCCATCAAGCCCCATCAT
Found at i:69079767 original size:46 final size:46
Alignment explanation
Indices: 69079717--69079892 Score: 196
Period size: 46 Copynumber: 3.8 Consensus size: 46
69079707 TGGTTGAGCA
*
69079717 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * *
69079763 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* * *
69079810 TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTCATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * *
69079856 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
69079893 GCGGGTTACA
Statistics
Matches: 107, Mismatches: 16, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 62 0.58
47 28 0.26
48 3 0.03
50 5 0.05
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:69079873 original size:93 final size:93
Alignment explanation
Indices: 69079714--69079885 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
69079704 GGATGGTTGA
* * *
69079714 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACGCCCGAACTCGTTGAGT
69079779 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
69079807 GCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTCATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACGCCCGAACTCGTTGAGT
69079872 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
69079886 CTTATGGGCG
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:69106586 original size:79 final size:81
Alignment explanation
Indices: 69106484--69106668 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
69106474 GCTACTCATT
* * *
69106484 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAATTGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
69106547 GGATTTAGTAAC-TCGCA
64 GGATATAGTAACTTAGCA
* **
69106564 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
* *
69106628 ATATGGTCACTTAGCA
66 ATATAGTAACTTAGCA
69106644 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
69106669 CATCATTCAA
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.59
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
ATATAGTAACTTAGCA
Found at i:69106668 original size:40 final size:40
Alignment explanation
Indices: 69106484--69106668 Score: 225
Period size: 40 Copynumber: 4.7 Consensus size: 40
69106474 GCTACTCATT
* *
69106484 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* * *
69106524 CAATTGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
*
69106564 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * * *
69106603 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
69106644 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
69106669 CATCATTCAA
Statistics
Matches: 124, Mismatches: 15, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
38 2 0.02
39 32 0.26
40 78 0.63
41 12 0.10
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:69117686 original size:19 final size:19
Alignment explanation
Indices: 69117659--69117698 Score: 71
Period size: 19 Copynumber: 2.1 Consensus size: 19
69117649 GTGAGCATGC
69117659 ATATATGTGATAAGGCCGA
1 ATATATGTGATAAGGCCGA
*
69117678 ATATGTGTGATAAGGCCGA
1 ATATATGTGATAAGGCCGA
69117697 AT
1 AT
69117699 GGCCAATGTG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.35, C:0.10, G:0.28, T:0.28
Consensus pattern (19 bp):
ATATATGTGATAAGGCCGA
Done.