Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100714657
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 3970000 characters in sequence are not A, C, G, or T
File 219 of 318
Found at i:69459982 original size:47 final size:47
Alignment explanation
Indices: 69459928--69460901 Score: 1707
Period size: 47 Copynumber: 20.6 Consensus size: 47
69459918 TATTTGAATA
*
69459928 AATGTGAAAGTTTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
69459975 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
69460024 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
69460071 AATGTG-AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
69460117 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
69460166 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
69460213 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
69460260 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
69460309 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
69460356 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
69460403 AATGTGAAAGTGTATATATGTGATAAGGCTTAATGGCCGATGTAATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
69460450 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
69460497 AATGTGAAAGTGTATATATGTGATAAGGCTTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
69460544 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
69460591 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
69460640 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
69460687 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
69460734 AATGTGAAAGTGTATACATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
69460781 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * *
69460828 AATGTGAAAGTGTATATATGTGATAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
69460875 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
69460902 TCCCGAAGGG
Statistics
Matches: 889, Mismatches: 29, Indels: 18
0.95 0.03 0.02
Matches are distributed among these distances:
46 44 0.05
47 661 0.74
49 184 0.21
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:69460569 original size:331 final size:331
Alignment explanation
Indices: 69459928--69460901 Score: 1747
Period size: 331 Copynumber: 2.9 Consensus size: 331
69459918 TATTTGAATA
69459928 AATGTGAAAGT-T-TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TA
*
69459991 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTA
64 TATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTA
* *
69460056 ATGGCCGATGTGATGAATGTG-AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAAT
129 ATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
69460120 GTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
194 GTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
69460185 GTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGC
257 GTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGC
69460250 CAATGTGATG
322 CAATGTGATG
69460260 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
69460325 TATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
66 TATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
* *
69460390 GGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCTTAATGGCCGATGTAATGAATGT
131 GGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
69460455 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
196 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * *
69460520 TAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
261 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAAT
69460585 GTGATG
326 GTGATG
69460591 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
69460656 TATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
66 TATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
*
69460721 GGCCGATGTGATGAATGTGAAAGTGTATACATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
131 GGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
69460786 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
196 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * * * * * *
69460851 TAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
261 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
69460902 TCCCGAAGGG
Statistics
Matches: 620, Mismatches: 19, Indels: 7
0.96 0.03 0.01
Matches are distributed among these distances:
331 426 0.69
332 98 0.16
333 49 0.08
334 47 0.08
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (331 bp):
AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
TATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
GGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAAT
GTGATG
Found at i:69467526 original size:39 final size:39
Alignment explanation
Indices: 69467300--69467515 Score: 351
Period size: 39 Copynumber: 5.5 Consensus size: 39
69467290 ACAAAGCATG
69467300 CGGGACTTTAAGCCCGGATATAATACCAGCACGAATGCCTT
1 CGGGAC-TT-AGCCCGGATATAATACCAGCACGAATGCCTT
**
69467341 CGGGACTTAGCCCGGATATAACGCCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAATACCAGCACGAATGCCTT
**
69467380 CGGGACTTAGCCCGGATATAGCACCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAATACCAGCACGAATGCCTT
*
69467419 CGGGACTTACCCCGGATATAATACCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAATACCAGCACGAATGCCTT
* *
69467458 CAGGACTTAGCCCGGATATAATACTAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAATACCAGCACGAATGCCTT
69467497 CGGGACTTAGCCCGGATAT
1 CGGGACTTAGCCCGGATAT
69467516 TTTTCCAGCA
Statistics
Matches: 164, Mismatches: 11, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
39 156 0.95
40 2 0.01
41 6 0.04
ACGTcount: A:0.27, C:0.29, G:0.24, T:0.20
Consensus pattern (39 bp):
CGGGACTTAGCCCGGATATAATACCAGCACGAATGCCTT
Found at i:69467551 original size:39 final size:39
Alignment explanation
Indices: 69467508--69467639 Score: 212
Period size: 39 Copynumber: 3.4 Consensus size: 39
69467498 GGGACTTAGC
* * *
69467508 CCGGATATTTTTCCAGCACT-TAGCCTGCGGACTTTAAGT
1 CCGGATATATTTCCAGCA-TAAAGCCTGCGGACTTCAAGT
69467547 CCGGATATATTTCCAGCATAAAGCCTGCGGACTTCAAGT
1 CCGGATATATTTCCAGCATAAAGCCTGCGGACTTCAAGT
69467586 CCGGATATATTTCCAGCATAAAGCCTGCGGACTTCAAGT
1 CCGGATATATTTCCAGCATAAAGCCTGCGGACTTCAAGT
*
69467625 CCGGATATTTTTCCA
1 CCGGATATATTTCCA
69467640 ATACCATGCA
Statistics
Matches: 88, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
38 1 0.01
39 87 0.99
ACGTcount: A:0.25, C:0.26, G:0.20, T:0.30
Consensus pattern (39 bp):
CCGGATATATTTCCAGCATAAAGCCTGCGGACTTCAAGT
Found at i:69467551 original size:78 final size:80
Alignment explanation
Indices: 69467302--69467632 Score: 340
Period size: 78 Copynumber: 4.2 Consensus size: 80
69467292 AAAGCATGCG
**
69467302 GGACTTTAAGCCCGGATATAATACCAGCACGAATGCCTTCGGGACTTAGCCCGGATATAACGCCA
1 GGACTTTAAGCCCGGATATAATACCAGCACGAATGCCTTCGGGACTTAGCCCGGATATAATTCCA
* *
69467367 GCACGAATGCCTTCG
66 GCACGAATGCCTGCA
** * *
69467382 GGAC-TT-AGCCCGGATATAGCACCAGCACGAATGCCTTCGGGACTTACCCCGGATATAATACCA
1 GGACTTTAAGCCCGGATATAATACCAGCACGAATGCCTTCGGGACTTAGCCCGGATATAATTCCA
*
69467445 GCACGAATGCCTTCA
66 GCACGAATGCCTGCA
* **
69467460 GGAC-TT-AGCCCGGATATAATACTAGCACGAATGCCTTCGGGACTTAGCCCGGATATTTTTCCA
1 GGACTTTAAGCCCGGATATAATACCAGCACGAATGCCTTCGGGACTTAGCCCGGATATAATTCCA
**
69467523 GCACTTA-GCCTGC-
66 GCACGAATGCCTGCA
* * * * * * * *
69467536 GGACTTTAAGTCCGGATATATTTCCAGCA-TAAAGCCTGC-GGACTTCAAGTCCGGATATATTTC
1 GGACTTTAAGCCCGGATATAATACCAGCACGAATGCCTTCGGGACTT--AGCCCGGATATAATTC
* *
69467599 CAGCA-TAAAGCCTGC-
64 CAGCACGAATGCCTGCA
* *
69467614 GGACTTCAAGTCCGGATAT
1 GGACTTTAAGCCCGGATAT
69467633 TTTTCCAATA
Statistics
Matches: 219, Mismatches: 27, Indels: 12
0.85 0.10 0.05
Matches are distributed among these distances:
76 10 0.05
77 16 0.07
78 187 0.85
79 2 0.01
80 4 0.02
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.23
Consensus pattern (80 bp):
GGACTTTAAGCCCGGATATAATACCAGCACGAATGCCTTCGGGACTTAGCCCGGATATAATTCCA
GCACGAATGCCTGCA
Found at i:69467594 original size:117 final size:119
Alignment explanation
Indices: 69467298--69467564 Score: 371
Period size: 117 Copynumber: 2.3 Consensus size: 119
69467288 CCACAAAGCA
*
69467298 TGCGGGACTTTAAGCCCGGATATAATACCAGCACGAATGCCTTCGGGACTTAGCCCGGATATAAC
1 TGCGGGACTTTAAGCCCGGATATAATACCAGCACGAATGCCTTCAGGACTTAGCCCGGATATAAC
*
69467363 GCCAGCACGAATGCCTTCGGGACTTAGCCCGGATATAGCACCAGCACGAATGCC
66 ACCAGCACGAATGCCTTCGGGACTTAGCCCGGATATAGCACCAGCACGAATGCC
* * *
69467417 TTCGGGAC-TT-ACCCCGGATATAATACCAGCACGAATGCCTTCAGGACTTAGCCCGGATATAAT
1 TGCGGGACTTTAAGCCCGGATATAATACCAGCACGAATGCCTTCAGGACTTAGCCCGGATATAAC
* **** **
69467480 ACTAGCACGAATGCCTTCGGGACTTAGCCCGGATATTTTTCCAGCACTTA-GCC
66 ACCAGCACGAATGCCTTCGGGACTTAGCCCGGATATAGCACCAGCACGAATGCC
* * *
69467533 TGC-GGACTTTAAGTCCGGATATATTTCCAGCA
1 TGCGGGACTTTAAGCCCGGATATAATACCAGCA
69467565 TAAAGCCTGC
Statistics
Matches: 129, Mismatches: 17, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
115 4 0.03
116 7 0.05
117 109 0.84
118 2 0.02
119 7 0.05
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (119 bp):
TGCGGGACTTTAAGCCCGGATATAATACCAGCACGAATGCCTTCAGGACTTAGCCCGGATATAAC
ACCAGCACGAATGCCTTCGGGACTTAGCCCGGATATAGCACCAGCACGAATGCC
Found at i:69470236 original size:40 final size:39
Alignment explanation
Indices: 69470066--69470275 Score: 316
Period size: 39 Copynumber: 5.3 Consensus size: 39
69470056 GAACTAAGAT
69470066 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGC
1 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGC
69470105 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGC
1 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGC
69470144 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGC
1 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGC
* * * *
69470183 CCGAAGGCATTTGTGTGAGTTACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAG-C
* *
69470223 CCGAAGGCATTTGTGCGA-ATTACT-ATAACCGGGCTATGTC
1 CCGAAGGCATTTGTGCGAGA-TACTAAT-TCCGGGCTAAG-C
69470263 CCGAAGGCATTTG
1 CCGAAGGCATTTG
69470276 AACGAGGAGC
Statistics
Matches: 158, Mismatches: 10, Indels: 5
0.91 0.06 0.03
Matches are distributed among these distances:
39 113 0.72
40 45 0.28
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (39 bp):
CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGC
Found at i:69476721 original size:39 final size:39
Alignment explanation
Indices: 69476495--69476710 Score: 333
Period size: 39 Copynumber: 5.5 Consensus size: 39
69476485 ACAAAGCATG
*
69476495 CGGGACTTTAAGCACGGATATAATACCAGCACGAATGCCTT
1 CGGGAC-TT-AGCCCGGATATAATACCAGCACGAATGCCTT
**
69476536 CGGGACTTAGCCCGGATATAACGCCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAATACCAGCACGAATGCCTT
**
69476575 CGGGACTTAGCCCGGATATAGCACCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAATACCAGCACGAATGCCTT
*
69476614 CGGGACTTACCCCGGATATAATACCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAATACCAGCACGAATGCCTT
* *
69476653 CAGGACTTAGCCCGGATATAATACTAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAATACCAGCACGAATGCCTT
*
69476692 CGGGACTTAGCCTGGATAT
1 CGGGACTTAGCCCGGATAT
69476711 TTTTCCAGCA
Statistics
Matches: 162, Mismatches: 13, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
39 154 0.95
40 2 0.01
41 6 0.04
ACGTcount: A:0.28, C:0.28, G:0.24, T:0.21
Consensus pattern (39 bp):
CGGGACTTAGCCCGGATATAATACCAGCACGAATGCCTT
Found at i:69476746 original size:117 final size:118
Alignment explanation
Indices: 69476493--69476759 Score: 333
Period size: 117 Copynumber: 2.3 Consensus size: 118
69476483 CCACAAAGCA
* *
69476493 TGCGGGACTTTAAGCACGGATATAATACCAGCACGAATGCCTTCGGGACTTAGCCCGGATATAAC
1 TGCGGAACTTTAAGC-CGGATATAATACCAGCACGAATGCCTTCAGGACTTAGCCCGGATATAAC
*
69476558 GCCAGCACGAATGCCTTCGGGACTTAGCCCGGATATAGCACCAGCACGAATGCC
65 ACCAGCACGAATGCCTTCGGGACTTAGCCCGGATATAGCACCAGCACGAATGCC
* * ** *
69476612 TTCGGGAC-TTACCCCGGATATAATACCAGCACGAATGCCTTCAGGACTTAGCCCGGATATAATA
1 TGCGGAACTTTAAGCCGGATATAATACCAGCACGAATGCCTTCAGGACTTAGCCCGGATATAACA
* * **** **
69476676 CTAGCACGAATGCCTTCGGGACTTAGCCTGGATATTTTTCCAGCACTTA-GCC
66 CCAGCACGAATGCCTTCGGGACTTAGCCCGGATATAGCACCAGCACGAATGCC
* *
69476728 TGC-GAACTTTAAGTCCGGATATATTTCCAGCA
1 TGCGGAACTTTAAG-CCGGATATAATACCAGCA
69476760 TAAAGCCTGC
Statistics
Matches: 126, Mismatches: 20, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
115 3 0.02
116 8 0.06
117 104 0.83
118 4 0.03
119 7 0.06
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.23
Consensus pattern (118 bp):
TGCGGAACTTTAAGCCGGATATAATACCAGCACGAATGCCTTCAGGACTTAGCCCGGATATAACA
CCAGCACGAATGCCTTCGGGACTTAGCCCGGATATAGCACCAGCACGAATGCC
Found at i:69476748 original size:39 final size:39
Alignment explanation
Indices: 69476705--69476834 Score: 190
Period size: 39 Copynumber: 3.3 Consensus size: 39
69476695 GACTTAGCCT
* * * *
69476705 GGATATTTTTCCAGCACT-TAGCCTGCGAACTTTAAGTCC
1 GGATATATTTCCAGCA-TAAAGCCTGCGGACTTCAAGTCC
69476744 GGATATATTTCCAGCATAAAGCCTGCGGACTTCAAGTCC
1 GGATATATTTCCAGCATAAAGCCTGCGGACTTCAAGTCC
*
69476783 GGATATATTTCCAGCATAAAGCCTGCGGACTTCAAGTCT
1 GGATATATTTCCAGCATAAAGCCTGCGGACTTCAAGTCC
*
69476822 GGATATTTTTCCA
1 GGATATATTTCCA
69476835 ATTCCATGCA
Statistics
Matches: 84, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
38 1 0.01
39 83 0.99
ACGTcount: A:0.26, C:0.24, G:0.19, T:0.31
Consensus pattern (39 bp):
GGATATATTTCCAGCATAAAGCCTGCGGACTTCAAGTCC
Found at i:69481168 original size:40 final size:40
Alignment explanation
Indices: 69481090--69481168 Score: 133
Period size: 40 Copynumber: 2.0 Consensus size: 40
69481080 ATGATTACAT
*
69481090 GTAAGACCATGTCTGGGACATTGGCATTGTATTGTGATTA
1 GTAAGACCATGTCTGGGACATTGGCATTGTAATGTGATTA
69481130 GTAAGACCATGTCTGGGACATTGGCATTGTTAAT-TGATT
1 GTAAGACCATGTCTGGGACATTGGCATTG-TAATGTGATT
69481169 TCGTGCAATA
Statistics
Matches: 37, Mismatches: 1, Indels: 2
0.93 0.03 0.05
Matches are distributed among these distances:
40 34 0.92
41 3 0.08
ACGTcount: A:0.25, C:0.13, G:0.27, T:0.35
Consensus pattern (40 bp):
GTAAGACCATGTCTGGGACATTGGCATTGTAATGTGATTA
Found at i:69482341 original size:14 final size:14
Alignment explanation
Indices: 69482322--69482349 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
69482312 GTAGATATGT
69482322 GAGATTGATGATTG
1 GAGATTGATGATTG
69482336 GAGATTGATGATTG
1 GAGATTGATGATTG
69482350 TGGCATATTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.29, C:0.00, G:0.36, T:0.36
Consensus pattern (14 bp):
GAGATTGATGATTG
Found at i:69488440 original size:28 final size:29
Alignment explanation
Indices: 69488353--69488430 Score: 90
Period size: 28 Copynumber: 2.8 Consensus size: 29
69488343 AGCATGGCTG
* * * *
69488353 CCAGATACAGA-AA-ATGTGACAGAGTCA
1 CCAGATACAGATAATTTGTGGCAGTGCCA
*
69488380 CCAGATACAGATATTTTGTGGCAGTGCCA
1 CCAGATACAGATAATTTGTGGCAGTGCCA
69488409 CCAGA-ACAGATAATTTGTGGCA
1 CCAGATACAGATAATTTGTGGCA
69488431 TAGCTACCAG
Statistics
Matches: 43, Mismatches: 6, Indels: 3
0.83 0.12 0.06
Matches are distributed among these distances:
27 11 0.26
28 17 0.40
29 15 0.35
ACGTcount: A:0.36, C:0.19, G:0.23, T:0.22
Consensus pattern (29 bp):
CCAGATACAGATAATTTGTGGCAGTGCCA
Found at i:69488593 original size:28 final size:28
Alignment explanation
Indices: 69488546--69488610 Score: 103
Period size: 28 Copynumber: 2.3 Consensus size: 28
69488536 AAATTAACCT
*
69488546 TAGGGGTATAAAGGTCATTTAGCATACA
1 TAGGGGTATAAAGGTAATTTAGCATACA
* *
69488574 TAGGGGTATAATGGTAATTTTGCATACA
1 TAGGGGTATAAAGGTAATTTAGCATACA
69488602 TAGGGGTAT
1 TAGGGGTAT
69488611 TCTAGTAAAT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.32, C:0.08, G:0.28, T:0.32
Consensus pattern (28 bp):
TAGGGGTATAAAGGTAATTTAGCATACA
Found at i:69495042 original size:28 final size:28
Alignment explanation
Indices: 69495002--69495113 Score: 127
Period size: 28 Copynumber: 4.0 Consensus size: 28
69494992 GGCTATGTAC
* *
69495002 GACACTTAATGTGTAAGATATCGAGTAT
1 GACACTTAGTGTGCAAGATATCGAGTAT
* * *
69495030 GACACTTAGTGTGCGAGATATGGAGTGT
1 GACACTTAGTGTGCAAGATATCGAGTAT
69495058 -AGCACTTAGTGTGCAAGATATCGAGTAT
1 GA-CACTTAGTGTGCAAGATATCGAGTAT
* * * *
69495086 GGCACTTAGTGTGCGAGACATTGAGTAT
1 GACACTTAGTGTGCAAGATATCGAGTAT
69495114 TCAACGACAT
Statistics
Matches: 70, Mismatches: 12, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
27 1 0.01
28 69 0.99
ACGTcount: A:0.29, C:0.12, G:0.29, T:0.29
Consensus pattern (28 bp):
GACACTTAGTGTGCAAGATATCGAGTAT
Found at i:69500895 original size:37 final size:37
Alignment explanation
Indices: 69500845--69500923 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
69500835 TTATTACGAA
* * *
69500845 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
69500882 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
69500919 GTCTT
1 GTCTT
69500924 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:69501118 original size:22 final size:22
Alignment explanation
Indices: 69501093--69501139 Score: 94
Period size: 22 Copynumber: 2.1 Consensus size: 22
69501083 CTCGGCCCTG
69501093 TCACATATATACACTTTCACAT
1 TCACATATATACACTTTCACAT
69501115 TCACATATATACACTTTCACAT
1 TCACATATATACACTTTCACAT
69501137 TCA
1 TCA
69501140 TCACATCGGC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.36, C:0.28, G:0.00, T:0.36
Consensus pattern (22 bp):
TCACATATATACACTTTCACAT
Found at i:69501166 original size:69 final size:69
Alignment explanation
Indices: 69501046--69501186 Score: 210
Period size: 69 Copynumber: 2.0 Consensus size: 69
69501036 TCGGGACTTA
* * * * *
69501046 TCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACACTTTC
1 TCACATATATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCACATATATACACTTTC
69501111 ACAT
66 ACAT
* * *
69501115 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTC
1 TCACATATATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCACATATATACACTTTC
69501180 ACAT
66 ACAT
69501184 TCA
1 TCA
69501187 TCACATCGGC
Statistics
Matches: 64, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
69 64 1.00
ACGTcount: A:0.29, C:0.31, G:0.07, T:0.33
Consensus pattern (69 bp):
TCACATATATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCACATATATACACTTTC
ACAT
Found at i:69501308 original size:22 final size:22
Alignment explanation
Indices: 69501280--69501353 Score: 62
Period size: 22 Copynumber: 3.3 Consensus size: 22
69501270 TTTCACATTC
69501280 ATCACATCGGCCATTAGGCCTT
1 ATCACATCGGCCATTAGGCCTT
*** * *
69501302 ATCACATATACACTTTCA--CATT
1 ATCACATCGGC-CATT-AGGCCTT
69501324 CATCACATCGGCCATTAGGCCTT
1 -ATCACATCGGCCATTAGGCCTT
69501347 ATCACAT
1 ATCACAT
69501354 ATATACACTT
Statistics
Matches: 37, Mismatches: 10, Indels: 10
0.65 0.18 0.18
Matches are distributed among these distances:
21 1 0.03
22 21 0.57
23 14 0.38
24 1 0.03
ACGTcount: A:0.28, C:0.31, G:0.11, T:0.30
Consensus pattern (22 bp):
ATCACATCGGCCATTAGGCCTT
Found at i:69501424 original size:49 final size:47
Alignment explanation
Indices: 69501115--69501520 Score: 726
Period size: 47 Copynumber: 8.6 Consensus size: 47
69501105 ACTTTCACAT
69501115 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
1 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
69501162 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
1 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
*
69501209 TCACATATATACACTTTCACATTCATCACATCGGCCATTTGGCCTTA
1 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
69501256 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
1 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
69501303 TCAC--ATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
1 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
69501348 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
1 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
*
69501395 TCACATATATATACACTTTCACATTCATCACATCGGGCATTAGGCCTTA
1 TCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
69501444 TCACATATATGTACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
1 TCACATATA--TACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
69501493 TCACATATATGTACACTTTCACATTCAT
1 TCACATATA--TACACTTTCACATTCAT
69501521 TCAAATATAC
Statistics
Matches: 349, Mismatches: 4, Indels: 10
0.96 0.01 0.03
Matches are distributed among these distances:
45 45 0.13
47 193 0.55
49 111 0.32
ACGTcount: A:0.30, C:0.29, G:0.09, T:0.33
Consensus pattern (47 bp):
TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
Found at i:69505503 original size:42 final size:40
Alignment explanation
Indices: 69505404--69505506 Score: 127
Period size: 42 Copynumber: 2.5 Consensus size: 40
69505394 CTATTACACG
69505404 GCCTGGCACACGGCGTGTGAGGTTATTTCAAAGGGTACAA
1 GCCTGGCACACGGCGTGTGAGGTTATTTCAAAGGGTACAA
* * *
69505444 GCCCTAGTACACGGGCGTGT-AGGGTTATTTCAAAGGGTACATT
1 G-CCTGGCACAC-GGCGTGTGA-GGTTATTTCAAAGGGTACA-A
69505487 GCCTGGCACACAGGCGTGTG
1 GCCTGGCACAC-GGCGTGTG
69505507 GCTTGACTGT
Statistics
Matches: 52, Mismatches: 6, Indels: 7
0.80 0.09 0.11
Matches are distributed among these distances:
40 1 0.02
41 9 0.17
42 41 0.79
43 1 0.02
ACGTcount: A:0.22, C:0.21, G:0.33, T:0.23
Consensus pattern (40 bp):
GCCTGGCACACGGCGTGTGAGGTTATTTCAAAGGGTACAA
Found at i:69507747 original size:19 final size:20
Alignment explanation
Indices: 69507721--69507763 Score: 59
Period size: 21 Copynumber: 2.1 Consensus size: 20
69507711 ATTGATATTT
*
69507721 TAAAAAATAGTGATACTTAA
1 TAAAAAGTAGTGATACTTAA
*
69507741 TAAAAATGTATTGATACTTAA
1 TAAAAA-GTAGTGATACTTAA
69507762 TA
1 TA
69507764 TGTAATGCCC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 6 0.30
21 14 0.70
ACGTcount: A:0.51, C:0.05, G:0.09, T:0.35
Consensus pattern (20 bp):
TAAAAAGTAGTGATACTTAA
Found at i:69512177 original size:49 final size:47
Alignment explanation
Indices: 69512056--69512219 Score: 292
Period size: 47 Copynumber: 3.4 Consensus size: 47
69512046 ATGGCGTAAA
*
69512056 ACATATATACACTTTCACATTCATCACATCAGCCATTAGGCCTTATC
1 ACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATC
69512103 ACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATC
1 ACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATC
*
69512150 ACATATATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTATC
1 AC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATC
69512199 ACATATATACACTTTCACATT
1 ACATATATACACTTTCACATT
69512220 TATTCAAATA
Statistics
Matches: 113, Mismatches: 2, Indels: 4
0.95 0.02 0.03
Matches are distributed among these distances:
47 67 0.59
49 46 0.41
ACGTcount: A:0.32, C:0.28, G:0.07, T:0.34
Consensus pattern (47 bp):
ACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATC
Found at i:69513743 original size:56 final size:56
Alignment explanation
Indices: 69513676--69513795 Score: 231
Period size: 56 Copynumber: 2.1 Consensus size: 56
69513666 TATTAGTTTA
69513676 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
*
69513732 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
69513788 TTGCCCAT
1 TTGCCCAT
69513796 CATCCCTTGT
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.23, C:0.23, G:0.09, T:0.45
Consensus pattern (56 bp):
TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
Found at i:69523769 original size:19 final size:21
Alignment explanation
Indices: 69523730--69523771 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
69523720 GCCTTGAGCA
*
69523730 ATTTTGACTTGTTTGAAAATT
1 ATTTTGACTTGTATGAAAATT
69523751 ATTTTGACTTG-AT-AAAATT
1 ATTTTGACTTGTATGAAAATT
69523770 AT
1 AT
69523772 AAACACTTTC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 8 0.40
20 1 0.05
21 11 0.55
ACGTcount: A:0.33, C:0.05, G:0.12, T:0.50
Consensus pattern (21 bp):
ATTTTGACTTGTATGAAAATT
Found at i:69525194 original size:38 final size:38
Alignment explanation
Indices: 69525146--69525232 Score: 165
Period size: 38 Copynumber: 2.3 Consensus size: 38
69525136 TCATGGTTGC
69525146 AATTAACCTAAAATTAGATATTTTACCAATTAATTATT
1 AATTAACCTAAAATTAGATATTTTACCAATTAATTATT
*
69525184 AATTAACCTAAAATTAGATATTTTACCAATTATTTATT
1 AATTAACCTAAAATTAGATATTTTACCAATTAATTATT
69525222 AATTAACCTAA
1 AATTAACCTAA
69525233 TTAATACCTC
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
38 48 1.00
ACGTcount: A:0.45, C:0.11, G:0.02, T:0.41
Consensus pattern (38 bp):
AATTAACCTAAAATTAGATATTTTACCAATTAATTATT
Found at i:69529113 original size:18 final size:18
Alignment explanation
Indices: 69529090--69529125 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
69529080 ATTTGAGTGG
69529090 ACTTACATGGTAATTAAC
1 ACTTACATGGTAATTAAC
69529108 ACTTACATGGTAATTAAC
1 ACTTACATGGTAATTAAC
69529126 CCATTCATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.39, C:0.17, G:0.11, T:0.33
Consensus pattern (18 bp):
ACTTACATGGTAATTAAC
Found at i:69532592 original size:23 final size:23
Alignment explanation
Indices: 69532408--69532596 Score: 206
Period size: 23 Copynumber: 8.2 Consensus size: 23
69532398 GGCTACCTCT
*
69532408 CAGTGGTAGCTTCAGCTAC-TATA
1 CAGTGGTAGCTTCGGCTACAT-TA
*
69532431 CAGTGGTAGCTTCGGCCACAATT-
1 CAGTGGTAGCTTCGGCTAC-ATTA
* *
69532454 CAGCGGTAGCTTCAGCTACATCT-
1 CAGTGGTAGCTTCGGCTACAT-TA
69532477 CAGTGGTAGCTTCGGCTACATCT-
1 CAGTGGTAGCTTCGGCTACAT-TA
* *
69532500 CAGTGGTAGCTTTGGCTACAATA
1 CAGTGGTAGCTTCGGCTACATTA
* *
69532523 CAGTGGTAGCTTTGGCTACAATA
1 CAGTGGTAGCTTCGGCTACATTA
*
69532546 CAGTGGTAGCTTCGGCTACGTTA
1 CAGTGGTAGCTTCGGCTACATTA
* * *
69532569 CAGTGATAGCTTCGGTTATATTA
1 CAGTGGTAGCTTCGGCTACATTA
69532592 CAGTG
1 CAGTG
69532597 TGGCACTTTG
Statistics
Matches: 146, Mismatches: 16, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
22 3 0.02
23 141 0.97
24 1 0.01
25 1 0.01
ACGTcount: A:0.23, C:0.22, G:0.25, T:0.30
Consensus pattern (23 bp):
CAGTGGTAGCTTCGGCTACATTA
Found at i:69532643 original size:58 final size:58
Alignment explanation
Indices: 69532553--69532668 Score: 223
Period size: 58 Copynumber: 2.0 Consensus size: 58
69532543 ATACAGTGGT
69532553 AGCTTCGGCTACGTTACAGTGATAGCTTCGGTTATATTACAGTGTGGCACTTTGTGCC
1 AGCTTCGGCTACGTTACAGTGATAGCTTCGGTTATATTACAGTGTGGCACTTTGTGCC
*
69532611 AGCTTCGGCTACGTTACAGTGATATCTTCGGTTATATTACAGTGTGGCACTTTGTGCC
1 AGCTTCGGCTACGTTACAGTGATAGCTTCGGTTATATTACAGTGTGGCACTTTGTGCC
69532669 TTATTCCCTG
Statistics
Matches: 57, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
58 57 1.00
ACGTcount: A:0.19, C:0.21, G:0.25, T:0.35
Consensus pattern (58 bp):
AGCTTCGGCTACGTTACAGTGATAGCTTCGGTTATATTACAGTGTGGCACTTTGTGCC
Found at i:69537336 original size:46 final size:46
Alignment explanation
Indices: 69537269--69537397 Score: 213
Period size: 46 Copynumber: 2.8 Consensus size: 46
69537259 TGTAACCGGC
* * * *
69537269 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCACAT
*
69537315 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCACAT
69537361 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
69537398 TGCTCAACCA
Statistics
Matches: 78, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
46 78 1.00
ACGTcount: A:0.30, C:0.29, G:0.21, T:0.19
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCACAT
Found at i:69537416 original size:46 final size:46
Alignment explanation
Indices: 69537277--69537416 Score: 144
Period size: 46 Copynumber: 3.0 Consensus size: 46
69537267 GCCCATAAGC
* ** *
69537277 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTC-A-CATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCC-T-AGT
* * * *
69537323 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT--AAGT
1 GAACTCGGACTCAACTCAACGAGTTCGG--ATGCTCAACCATCCTAGT
69537369 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCTAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCTAGT
69537415 GA
1 GA
69537417 CATGTCACTT
Statistics
Matches: 76, Mismatches: 12, Indels: 12
0.76 0.12 0.12
Matches are distributed among these distances:
44 9 0.12
46 63 0.83
48 1 0.01
50 3 0.04
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
GAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCTAGT
Found at i:69540975 original size:23 final size:23
Alignment explanation
Indices: 69540946--69541157 Score: 237
Period size: 23 Copynumber: 9.2 Consensus size: 23
69540936 AGCTACATCT
69540946 CAGTGGTAGCTTCGGCTACAATA
1 CAGTGGTAGCTTCGGCTACAATA
* * * *
69540969 CAATGGTTGCTTAGGTTACAATA
1 CAGTGGTAGCTTCGGCTACAATA
* * * * *
69540992 AAATGGTAGCTTTGGCTACATTT
1 CAGTGGTAGCTTCGGCTACAATA
* *
69541015 CAGTGGTAGCTTCGTCTACAAGA
1 CAGTGGTAGCTTCGGCTACAATA
*
69541038 CAGTGGTAGCTTCGGCTAC-ATCT
1 CAGTGGTAGCTTCGGCTACAAT-A
69541061 CAGTGGTAGCTTCGGCTACAATA
1 CAGTGGTAGCTTCGGCTACAATA
*
69541084 CAGTGGTAGCTTTGGCTACAATA
1 CAGTGGTAGCTTCGGCTACAATA
**
69541107 CAGTGGTAGCTTCGGCTACGTTA
1 CAGTGGTAGCTTCGGCTACAATA
** * *
69541130 CAGTTATAGCTTCGGCTATATTA
1 CAGTGGTAGCTTCGGCTACAATA
69541153 CAGTG
1 CAGTG
69541158 TGGCACTTTG
Statistics
Matches: 157, Mismatches: 30, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
22 1 0.01
23 154 0.98
24 2 0.01
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.31
Consensus pattern (23 bp):
CAGTGGTAGCTTCGGCTACAATA
Found at i:69543348 original size:6 final size:6
Alignment explanation
Indices: 69543337--69543438 Score: 95
Period size: 6 Copynumber: 16.8 Consensus size: 6
69543327 AACCAAAATG
*
69543337 AGAATC AGAATC AGAATC AGTAA-C AGAATC AGAATC AGAATC A-ATATT
1 AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGA-ATC
* * *
69543385 AGTAA-C AGAATC AGAATC AGAATC CGAATT AG-GTGAC AGAATC AGAATC
1 AG-AATC AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC
69543434 AGAAT
1 AGAAT
69543439 GTGAATGCAA
Statistics
Matches: 79, Mismatches: 8, Indels: 18
0.75 0.08 0.17
Matches are distributed among these distances:
5 6 0.08
6 66 0.84
7 5 0.06
8 2 0.03
ACGTcount: A:0.48, C:0.15, G:0.18, T:0.20
Consensus pattern (6 bp):
AGAATC
Found at i:69543373 original size:30 final size:30
Alignment explanation
Indices: 69543337--69543438 Score: 152
Period size: 30 Copynumber: 3.4 Consensus size: 30
69543327 AACCAAAATG
*
69543337 AGAATCAGAATCAGAATCAGTAACAGAATC
1 AGAATCAGAATCAGAATTAGTAACAGAATC
69543367 AGAATCAGAATCA-ATATTAGTAACAGAATC
1 AGAATCAGAATCAGA-ATTAGTAACAGAATC
* *
69543397 AGAATCAGAATCCGAATTAGGTGACAGAATC
1 AGAATCAGAATCAGAATTA-GTAACAGAATC
69543428 AGAATCAGAAT
1 AGAATCAGAAT
69543439 GTGAATGCAA
Statistics
Matches: 66, Mismatches: 3, Indels: 5
0.89 0.04 0.07
Matches are distributed among these distances:
29 1 0.02
30 43 0.65
31 22 0.33
ACGTcount: A:0.48, C:0.15, G:0.18, T:0.20
Consensus pattern (30 bp):
AGAATCAGAATCAGAATTAGTAACAGAATC
Found at i:69543626 original size:27 final size:27
Alignment explanation
Indices: 69543558--69543629 Score: 69
Period size: 27 Copynumber: 2.7 Consensus size: 27
69543548 CATGGCTGCT
* *
69543558 AGAA-CAGAT-ATCGTGACAGAGTCACC
1 AGAATCAGATAAT-GTGGCAGAGCCACC
* *
69543584 AG-ATACAAATATTGTGGCAGAGCCACC
1 AGAAT-CAGATAATGTGGCAGAGCCACC
69543611 AGAATCAGATAATGTGGCA
1 AGAATCAGATAATGTGGCA
69543630 AACCCACCTA
Statistics
Matches: 36, Mismatches: 6, Indels: 7
0.73 0.12 0.14
Matches are distributed among these distances:
25 1 0.03
26 2 0.06
27 30 0.83
28 3 0.08
ACGTcount: A:0.39, C:0.19, G:0.24, T:0.18
Consensus pattern (27 bp):
AGAATCAGATAATGTGGCAGAGCCACC
Found at i:69543842 original size:22 final size:22
Alignment explanation
Indices: 69543794--69543852 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
69543784 GTAAATACGT
*
69543794 TTGGCACGAAGCCATAGTCAAG
1 TTGGCACAAAGCCATAGTCAAG
* * * *
69543816 ATGGCACAAAGCCATATTTAGG
1 TTGGCACAAAGCCATAGTCAAG
*
69543838 TTGGCACAGAGCCAT
1 TTGGCACAAAGCCAT
69543853 TAATAACGGG
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.32, C:0.22, G:0.25, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAGTCAAG
Found at i:69543984 original size:27 final size:26
Alignment explanation
Indices: 69543943--69544022 Score: 106
Period size: 27 Copynumber: 3.0 Consensus size: 26
69543933 ATCGGTCAAA
* * *
69543943 AGATATTGTGACAGAGTCACCAGATAG
1 AGATATTGTGGCAGAGCCACCAGA-AC
69543970 AGATATTGTGGCAGAGCCACCAGAAC
1 AGATATTGTGGCAGAGCCACCAGAAC
*
69543996 AGATATTTGTGGCATAGCCACCAGAAC
1 AGATA-TTGTGGCAGAGCCACCAGAAC
69544023 GCTTCCTCCG
Statistics
Matches: 48, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
26 6 0.12
27 42 0.88
ACGTcount: A:0.35, C:0.20, G:0.25, T:0.20
Consensus pattern (26 bp):
AGATATTGTGGCAGAGCCACCAGAAC
Found at i:69544251 original size:27 final size:27
Alignment explanation
Indices: 69544221--69544408 Score: 223
Period size: 27 Copynumber: 7.0 Consensus size: 27
69544211 GGGGCAAAAT
* * * *
69544221 GGTAATTTTACCCCACAAAGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
69544248 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
69544275 TGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* **
69544302 GATAATTCTACCCTACGGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
69544329 GGTAATTCTACCCTATAAGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
69544356 AGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
69544383 GGTAATTTTACCCTACAGGGGTATTT
1 GGTAATTCTACCCTACAAGGGTATTT
69544409 TAGTAATTTC
Statistics
Matches: 137, Mismatches: 24, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 137 1.00
ACGTcount: A:0.24, C:0.20, G:0.19, T:0.36
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:69544409 original size:54 final size:54
Alignment explanation
Indices: 69544221--69544416 Score: 252
Period size: 54 Copynumber: 3.6 Consensus size: 54
69544211 GGGGCAAAAT
* * * **
69544221 GGTAATTTTACCCCACAAAGGTATCTCGGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTTAGTAATTCTACCCTACAGGGGTATTTC
* * *
69544275 TGT-ATTTCTACCCTACAAGGGTA-TTTCGATAATTCTACCCTACGGGGGTATTTC
1 GGTAATTT-TACCCTACAAGGGTATTTTAG-TAATTCTACCCTACAGGGGTATTTC
* * *
69544329 GGTAATTCTACCCTATAAGGGTATTTTAGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTTAGTAATTCTACCCTACAGGGGTATTTC
*
69544383 GGTAATTTTACCCTACAGGGGTATTTTAGTAATT
1 GGTAATTTTACCCTACAAGGGTATTTTAGTAATT
69544417 TCACAATTGA
Statistics
Matches: 122, Mismatches: 16, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
53 6 0.05
54 109 0.89
55 7 0.06
ACGTcount: A:0.25, C:0.19, G:0.19, T:0.37
Consensus pattern (54 bp):
GGTAATTTTACCCTACAAGGGTATTTTAGTAATTCTACCCTACAGGGGTATTTC
Found at i:69544416 original size:81 final size:81
Alignment explanation
Indices: 69544221--69544408 Score: 252
Period size: 81 Copynumber: 2.3 Consensus size: 81
69544211 GGGGCAAAAT
* ** * * *
69544221 GGTAATTTTACCCCACAAAGGTATCTCGGTAATTCTACCCTACAGGGGTATTTCTGTATTTCTAC
1 GGTAATTTTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCTGTAATTCTAC
69544286 CCTACAAGGGTATTTC
66 CCTACAAGGGTATTTC
* * * *
69544302 GATAATTCTACCCTACGGGGGTATTTCGGTAATTCTACCCTATAAGGGTATTT-TAGTAATTCTA
1 GGTAATTTTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCT-GTAATTCTA
* *
69544366 CCCTATAGGGGTATTTC
65 CCCTACAAGGGTATTTC
69544383 GGTAATTTTACCCTACAGGGGTATTT
1 GGTAATTTTACCCTACAGGGGTATTT
69544409 TAGTAATTTC
Statistics
Matches: 91, Mismatches: 15, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
80 1 0.01
81 90 0.99
ACGTcount: A:0.24, C:0.20, G:0.19, T:0.36
Consensus pattern (81 bp):
GGTAATTTTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCTGTAATTCTAC
CCTACAAGGGTATTTC
Found at i:69544455 original size:27 final size:27
Alignment explanation
Indices: 69544425--69544830 Score: 437
Period size: 27 Copynumber: 15.0 Consensus size: 27
69544415 TTTCACAATT
* *
69544425 GAGGGTAAAATAGTAATTTTGTAAATC
1 GAGGGTAAAACAGTAATTCTGTAAATC
* *
69544452 GAGGGTAAAAC-GATAATTTTGTAAACC
1 GAGGGTAAAACAG-TAATTCTGTAAATC
* *
69544479 AAGGGT-AAACTAGTAATTCTATAAATC
1 GAGGGTAAAAC-AGTAATTCTGTAAATC
* * **
69544506 GAGGGTAAAACGGTAATTTTACAAATC
1 GAGGGTAAAACAGTAATTCTGTAAATC
*
69544533 GAGGGTAAAACAGTAATTCTGTAAATT
1 GAGGGTAAAACAGTAATTCTGTAAATC
69544560 GAGGGTAAAACAGTAATTCTGTAAA-C
1 GAGGGTAAAACAGTAATTCTGTAAATC
* *
69544586 TGAGGGTAAAA-TGATAATTCTATAAATC
1 -GAGGGTAAAACAG-TAATTCTGTAAATC
**
69544614 GAGGGTAAAATGGTAATTCTGTAAA-C
1 GAGGGTAAAACAGTAATTCTGTAAATC
* *
69544640 TGAGGGTAAGACGGTAATTCTGTAAATC
1 -GAGGGTAAAACAGTAATTCTGTAAATC
* * ** *
69544668 AAGGGTAAAACAGTAATTTTACAAATT
1 GAGGGTAAAACAGTAATTCTGTAAATC
*
69544695 GAGGGTAAAACGGTAATTCTGTAAATC
1 GAGGGTAAAACAGTAATTCTGTAAATC
*
69544722 GAGGGTAAAATAGTAATTCTGTAAA-C
1 GAGGGTAAAACAGTAATTCTGTAAATC
** *
69544748 TGAGGGTAAAATGGTAATTCTATAAATC
1 -GAGGGTAAAACAGTAATTCTGTAAATC
* **
69544776 GAGGGTAAAACAGTAATTTTAAAAATC
1 GAGGGTAAAACAGTAATTCTGTAAATC
*
69544803 GAGGGTAAAACGGTAATTCTGTAAATC
1 GAGGGTAAAACAGTAATTCTGTAAATC
69544830 G
1 G
69544831 GGAGTACTTT
Statistics
Matches: 320, Mismatches: 47, Indels: 24
0.82 0.12 0.06
Matches are distributed among these distances:
26 8 0.03
27 303 0.95
28 9 0.03
ACGTcount: A:0.41, C:0.09, G:0.22, T:0.28
Consensus pattern (27 bp):
GAGGGTAAAACAGTAATTCTGTAAATC
Found at i:69550856 original size:39 final size:39
Alignment explanation
Indices: 69550806--69550933 Score: 193
Period size: 39 Copynumber: 3.3 Consensus size: 39
69550796 CTTTAACCGA
* ** * * *
69550806 ATATTTTTCCAGCACGTAGCCTGCAGACCTCAAGTTCGG
1 ATATATTTCCAGCATATAGCCTGCGGACCTCATGTCCGG
69550845 ATATATTTCCAGCATATAGCCTGCGGACCTCATGTCCGG
1 ATATATTTCCAGCATATAGCCTGCGGACCTCATGTCCGG
*
69550884 ATATATTTCAAGCATATAGCCTGCGGACCTCATGTCCGG
1 ATATATTTCCAGCATATAGCCTGCGGACCTCATGTCCGG
69550923 ATATATTTCCA
1 ATATATTTCCA
69550934 ATCTCATATA
Statistics
Matches: 81, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 81 1.00
ACGTcount: A:0.25, C:0.27, G:0.19, T:0.30
Consensus pattern (39 bp):
ATATATTTCCAGCATATAGCCTGCGGACCTCATGTCCGG
Found at i:69553207 original size:7 final size:7
Alignment explanation
Indices: 69553197--69553233 Score: 74
Period size: 7 Copynumber: 5.3 Consensus size: 7
69553187 TTAAGTGATA
69553197 AGGGATG
1 AGGGATG
69553204 AGGGATG
1 AGGGATG
69553211 AGGGATG
1 AGGGATG
69553218 AGGGATG
1 AGGGATG
69553225 AGGGATG
1 AGGGATG
69553232 AG
1 AG
69553234 TAGAAATGTG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 30 1.00
ACGTcount: A:0.30, C:0.00, G:0.57, T:0.14
Consensus pattern (7 bp):
AGGGATG
Found at i:69553640 original size:13 final size:13
Alignment explanation
Indices: 69553622--69553647 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
69553612 AGAATAAAAT
69553622 TTAATTAATTTAA
1 TTAATTAATTTAA
69553635 TTAATTAATTTAA
1 TTAATTAATTTAA
69553648 AACCCAAATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (13 bp):
TTAATTAATTTAA
Found at i:69562266 original size:40 final size:40
Alignment explanation
Indices: 69562083--69562252 Score: 225
Period size: 40 Copynumber: 4.3 Consensus size: 40
69562073 TCCTCGTTCA
* * * * *
69562083 AATGCCTTCGGGACATAGCCCCGATTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
69562122 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
69562162 AATGCCTTCGGGACTTAACCCGGCTTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
69562202 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
69562242 AAGGCCTTCGG
1 AATGCCTTCGG
69562253 ATCTTAGTCC
Statistics
Matches: 117, Mismatches: 13, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
39 34 0.29
40 83 0.71
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:69570171 original size:40 final size:40
Alignment explanation
Indices: 69569988--69570157 Score: 234
Period size: 40 Copynumber: 4.3 Consensus size: 40
69569978 TCCTCGTTCA
* * * *
69569988 AATGCCTTCGGGACATAGCCCGGATTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
69570027 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
69570067 AATGCCTTCGGGACTTAACCCGGCTTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
69570107 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
69570147 AAGGCCTTCGG
1 AATGCCTTCGG
69570158 ATCTTAGTCC
Statistics
Matches: 118, Mismatches: 12, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 35 0.30
40 83 0.70
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:69574428 original size:23 final size:24
Alignment explanation
Indices: 69574388--69574432 Score: 74
Period size: 23 Copynumber: 1.9 Consensus size: 24
69574378 CAAGTCCTAC
*
69574388 CCATCCAGCCTCTACACTCCATCT
1 CCATCCAACCTCTACACTCCATCT
69574412 CCATCCAACC-CTACACTCCAT
1 CCATCCAACCTCTACACTCCAT
69574433 GTAGGGATAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 11 0.55
24 9 0.45
ACGTcount: A:0.24, C:0.51, G:0.02, T:0.22
Consensus pattern (24 bp):
CCATCCAACCTCTACACTCCATCT
Found at i:69574847 original size:27 final size:27
Alignment explanation
Indices: 69574688--69574846 Score: 219
Period size: 27 Copynumber: 5.9 Consensus size: 27
69574678 TATATACTGT
* *
69574688 ACATAGGGGCAAAACAGTCATCTTACC
1 ACATAAGGGCAAAACAGTCATTTTACC
69574715 ACATAAGGGCAAAACAGTCATTTTACC
1 ACATAAGGGCAAAACAGTCATTTTACC
69574742 ACATAAGGGCAAAACAGTCATTTTACC
1 ACATAAGGGCAAAACAGTCATTTTACC
* * *
69574769 ACATAAGGACAAAATAATCATTTTACC
1 ACATAAGGGCAAAACAGTCATTTTACC
* * *
69574796 ACATAATGGCAAAATAGTTATTTTACC
1 ACATAAGGGCAAAACAGTCATTTTACC
* *
69574823 ATATATAGGGAAAAACAGTCATTT
1 ACATA-AGGGCAAAACAGTCATTT
69574847 AATTAATTAG
Statistics
Matches: 117, Mismatches: 14, Indels: 1
0.89 0.11 0.01
Matches are distributed among these distances:
27 103 0.88
28 14 0.12
ACGTcount: A:0.42, C:0.19, G:0.14, T:0.25
Consensus pattern (27 bp):
ACATAAGGGCAAAACAGTCATTTTACC
Found at i:69577095 original size:7 final size:7
Alignment explanation
Indices: 69577085--69577120 Score: 54
Period size: 7 Copynumber: 5.1 Consensus size: 7
69577075 GAGGAGAGGA
69577085 TGATGAG
1 TGATGAG
69577092 TGATGAG
1 TGATGAG
*
69577099 TGATGAA
1 TGATGAG
69577106 TGATGAG
1 TGATGAG
*
69577113 GGATGAG
1 TGATGAG
69577120 T
1 T
69577121 AGAAATGTGA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
7 25 1.00
ACGTcount: A:0.31, C:0.00, G:0.42, T:0.28
Consensus pattern (7 bp):
TGATGAG
Found at i:69580267 original size:48 final size:48
Alignment explanation
Indices: 69580210--69580481 Score: 284
Period size: 48 Copynumber: 5.7 Consensus size: 48
69580200 TGATATGTGT
*
69580210 GCTAGTGTAAGACCATGTCTAGGACATGGCATCGACCACATTATGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGACCACATTATGAGA
* **** * *
69580258 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGAGTTGA-TATGTGT
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATC-GACCACATTATGAGA
* * * *
69580306 GCTAGTGTAAGATCATGTTTGGGACATGGCATCGGCCACATTACGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGACCACATTATGAGA
* * *
69580354 GCTAGTGTAAGACCATGTCTGGGACATTGTATCGGCCACATTATGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGACCACATTATGAGA
* * * * *
69580402 GCCAATGTAAGTCAATGTCTAGGACATGGCATCG---ACATTGA-GACGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGACCACATT-ATGA-GA
69580448 GTGCTAGTGTAAGACCATGTCTGGGACATGGCAT
1 --GCTAGTGTAAGACCATGTCTGGGACATGGCAT
69580482 AGGCATTTTA
Statistics
Matches: 182, Mismatches: 36, Indels: 12
0.79 0.16 0.05
Matches are distributed among these distances:
45 7 0.04
46 3 0.02
47 2 0.01
48 167 0.92
49 3 0.02
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.25
Consensus pattern (48 bp):
GCTAGTGTAAGACCATGTCTGGGACATGGCATCGACCACATTATGAGA
Found at i:69580334 original size:96 final size:96
Alignment explanation
Indices: 69580200--69580481 Score: 322
Period size: 96 Copynumber: 2.9 Consensus size: 96
69580190 TGCGAACATG
*
69580200 TGATATGTGTGCTAGTGTAAGACCATGTCTAGGACATGGCATCGACCACATTATGAGAGCCAGTG
1 TGATATGTGTGCTAGTGTAAGACCATGTCTAGGACATGGCATCGACCACATTACGAGAGCCAGTG
69580265 TAAGACCATGTCTGGGACATGGCATCGGAGT
66 TAAGACCATGTCTGGGACATGGCATCGGAGT
* * * * *
69580296 TGATATGTGTGCTAGTGTAAGATCATGTTTGGGACATGGCATCGGCCACATTACGAGAGCTAGTG
1 TGATATGTGTGCTAGTGTAAGACCATGTCTAGGACATGGCATCGACCACATTACGAGAGCCAGTG
* * **
69580361 TAAGACCATGTCTGGGACATTGTATCGGCCACA
66 TAAGACCATGTCTGGGACATGGCATCGG--AGT
* * * * * * * *
69580394 T--TATGAGAGCCAATGTAAGTCAATGTCTAGGACATGGCATCG---ACATTGAGACGAGTGCTA
1 TGATATGTGTGCTAGTGTAAGACCATGTCTAGGACATGGCATCGACCACATT---ACGAGAGCCA
69580454 GTGTAAGACCATGTCTGGGACATGGCAT
63 GTGTAAGACCATGTCTGGGACATGGCAT
69580482 AGGCATTTTA
Statistics
Matches: 159, Mismatches: 22, Indels: 10
0.83 0.12 0.05
Matches are distributed among these distances:
93 5 0.03
96 152 0.96
98 2 0.01
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.26
Consensus pattern (96 bp):
TGATATGTGTGCTAGTGTAAGACCATGTCTAGGACATGGCATCGACCACATTACGAGAGCCAGTG
TAAGACCATGTCTGGGACATGGCATCGGAGT
Found at i:69580473 original size:144 final size:144
Alignment explanation
Indices: 69580210--69580481 Score: 402
Period size: 144 Copynumber: 1.9 Consensus size: 144
69580200 TGATATGTGT
* *
69580210 GCTAGTGTAAGACCATGTCTAGGACATGGCATCGACCACATTATGAGAGCCAGTGTAAGACCATG
1 GCTAGTGTAAGACCATGTCTAGGACATGGCATCGACCACATTATGAGAGCCAATGTAAGACAATG
* * * * * * *
69580275 TCTGGGACATGGCATCGGAGTTGATATGTGTGCTAGTGTAAGATCATGTTTGGGACATGGCATCG
66 TCTAGGACATGGCATCGGAATTGAGACGAGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCG
69580340 GCCACATTACGAGA
131 GCCACATTACGAGA
* * * * *
69580354 GCTAGTGTAAGACCATGTCTGGGACATTGTATCGGCCACATTATGAGAGCCAATGTAAGTCAATG
1 GCTAGTGTAAGACCATGTCTAGGACATGGCATCGACCACATTATGAGAGCCAATGTAAGACAATG
69580419 TCTAGGACATGGCATC-GACATTGAGACGAGTGCTAGTGTAAGACCATGTCTGGGACATGGCAT
66 TCTAGGACATGGCATCGGA-ATTGAGACGAGTGCTAGTGTAAGACCATGTCTGGGACATGGCAT
69580482 AGGCATTTTA
Statistics
Matches: 113, Mismatches: 14, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
143 2 0.02
144 111 0.98
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.25
Consensus pattern (144 bp):
GCTAGTGTAAGACCATGTCTAGGACATGGCATCGACCACATTATGAGAGCCAATGTAAGACAATG
TCTAGGACATGGCATCGGAATTGAGACGAGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCG
GCCACATTACGAGA
Found at i:69583076 original size:10 final size:10
Alignment explanation
Indices: 69583057--69583106 Score: 59
Period size: 10 Copynumber: 5.0 Consensus size: 10
69583047 TTAAATCCTA
69583057 AAAGATAAAT
1 AAAGATAAAT
69583067 ACAA-ATAAAT
1 A-AAGATAAAT
*
69583077 AAAGATAATT
1 AAAGATAAAT
69583087 AAAGATAAAT
1 AAAGATAAAT
69583097 GAAA-ATAAAT
1 -AAAGATAAAT
69583107 CCTAAATCTA
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
9 2 0.06
10 28 0.80
11 5 0.14
ACGTcount: A:0.68, C:0.02, G:0.08, T:0.22
Consensus pattern (10 bp):
AAAGATAAAT
Found at i:69588178 original size:40 final size:40
Alignment explanation
Indices: 69588105--69588281 Score: 205
Period size: 40 Copynumber: 4.5 Consensus size: 40
69588095 AAGTATCTTT
* ** *
69588105 GGGATTTAG-CCGGATATAACCACTCGCACAAATGCCTTC
1 GGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTC
* * *
69588144 GGGTCTTAGCCCGGATATGGTCACTAGCATAAATGCCTTC
1 GGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTC
* * *
69588184 GGGACTTAGCCCGGATATAGTCGCCAGCACAGATGCCTTC
1 GGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTC
* * * *
69588224 GGGTCTTAGCCCAGATATAG-CAACTCGCACAAAAGCCTTC
1 GGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGCCTTC
69588264 GGGACTTAGCCCGGATAT
1 GGGACTTAGCCCGGATAT
69588282 CATTCGAATA
Statistics
Matches: 114, Mismatches: 22, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
39 8 0.07
40 106 0.93
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.23
Consensus pattern (40 bp):
GGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTC
Found at i:69588262 original size:80 final size:80
Alignment explanation
Indices: 69588130--69588281 Score: 234
Period size: 80 Copynumber: 1.9 Consensus size: 80
69588120 ATAACCACTC
* * * *
69588130 GCACAAATGCCTTCGGGTCTTAGCCCGGATATGGTCACTAGCATAAATGCCTTCGGGACTTAGCC
1 GCACAAATGCCTTCGGGTCTTAGCCCAGATATAGTCACTAGCACAAAAGCCTTCGGGACTTAGCC
69588195 CGGATATAGTCGCCA
66 CGGATATAGTCGCCA
* *
69588210 GCACAGATGCCTTCGGGTCTTAGCCCAGATATAG-CAACTCGCACAAAAGCCTTCGGGACTTAGC
1 GCACAAATGCCTTCGGGTCTTAGCCCAGATATAGTC-ACTAGCACAAAAGCCTTCGGGACTTAGC
69588274 CCGGATAT
65 CCGGATAT
69588282 CATTCGAATA
Statistics
Matches: 65, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
79 1 0.02
80 64 0.98
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.22
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAGCCCAGATATAGTCACTAGCACAAAAGCCTTCGGGACTTAGCC
CGGATATAGTCGCCA
Found at i:69595110 original size:44 final size:42
Alignment explanation
Indices: 69595048--69595155 Score: 128
Period size: 44 Copynumber: 2.5 Consensus size: 42
69595038 CATGACATAG
* * *
69595048 GATTTCGTGTAAGACCATGTCTAAGACGTTGGCATCG-ATTT
1 GATTTTGTGTAAGACCATGTCTAAGACATTGGCATCGTATAT
**
69595089 GAGATTTATGTGTAAGACCATGTCTGGGACATTGGCATCGTATAT
1 --GATTT-TGTGTAAGACCATGTCTAAGACATTGGCATCGTATAT
*
69595134 GATTTTGTGTAAGACCTTGTCT
1 GATTTTGTGTAAGACCATGTCT
69595156 GGGATACTGG
Statistics
Matches: 57, Mismatches: 6, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
42 16 0.28
43 10 0.18
44 28 0.49
45 3 0.05
ACGTcount: A:0.24, C:0.15, G:0.25, T:0.36
Consensus pattern (42 bp):
GATTTTGTGTAAGACCATGTCTAAGACATTGGCATCGTATAT
Found at i:69595193 original size:43 final size:42
Alignment explanation
Indices: 69595099--69595203 Score: 111
Period size: 42 Copynumber: 2.5 Consensus size: 42
69595089 GAGATTTATG
* * ***
69595099 TGTAAGACCATGTCTGGGACATTGGCATCGTATATGATTTTG
1 TGTAAGACCTTGTCTGGGACACTGGCATCGTATATGATTACA
* * *
69595141 TGTAAGACCTTGTCTGGGATACTGGCATTGATATTTGATTACA
1 TGTAAGACCTTGTCTGGGACACTGGCATCG-TATATGATTACA
**
69595184 TGTAAGACCTCATCTGGGAC
1 TGTAAGACCTTGTCTGGGAC
69595204 GTTGGCATTG
Statistics
Matches: 51, Mismatches: 11, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
42 26 0.51
43 25 0.49
ACGTcount: A:0.25, C:0.16, G:0.25, T:0.34
Consensus pattern (42 bp):
TGTAAGACCTTGTCTGGGACACTGGCATCGTATATGATTACA
Found at i:69599954 original size:98 final size:96
Alignment explanation
Indices: 69599759--69600055 Score: 284
Period size: 98 Copynumber: 3.1 Consensus size: 96
69599749 AGATGTTGAC
* ** * * *
69599759 GCCATGTCCCAGACATGGTCTTACACTGGCTAGCA-CATCAAAGCCGATGCCATGTCCCAGACAG
1 GCCATGTCCCAGACA-GGTCTTACACTAGCTCTCATC-TCAATGTCGATGCCATGTCCCAGACAA
* * *
69599823 GTCTTACAAT-GACTT-TCATATATCAAGGTCGAT
64 GTCTTACACTAG-CTTGT-ATATCTCAAGGCCGAT
* * * * **
69599856 GCCGTGTCTCAGATAGGTCTTACACTAGCTTTCATCTATCGGTGTCGATGCCATGTCCCAGACAA
1 GCCATGTCCCAGACAGGTCTTACACTAGCTCTCATC--TCAATGTCGATGCCATGTCCCAGACAA
*
69599921 GTCTTACACTAGCTTGTATATCTCGAGGCCGAT
64 GTCTTACACTAGCTTGTATATCTCAAGGCCGAT
* * * * * *
69599954 G-CATGTCCCAGACATGTCTTATAGTAGCTCTCGTCTCAATGTCGATG-CATGTCCTAGACTA-T
1 GCCATGTCCCAGACAGGTCTTACACTAGCTCTCATCTCAATGTCGATGCCATGTCCCAGACAAGT
*
69600016 CTTACACTAGCTTGTATATCTCAAGACCGAT
66 CTTACACTAGCTTGTATATCTCAAGGCCGAT
69600047 G-CATGTCCC
1 GCCATGTCCC
69600056 GTATATCTCT
Statistics
Matches: 167, Mismatches: 29, Indels: 12
0.80 0.14 0.06
Matches are distributed among these distances:
93 39 0.23
94 12 0.07
95 10 0.06
96 16 0.10
97 39 0.23
98 49 0.29
99 2 0.01
ACGTcount: A:0.24, C:0.27, G:0.20, T:0.29
Consensus pattern (96 bp):
GCCATGTCCCAGACAGGTCTTACACTAGCTCTCATCTCAATGTCGATGCCATGTCCCAGACAAGT
CTTACACTAGCTTGTATATCTCAAGGCCGAT
Found at i:69599982 original size:48 final size:48
Alignment explanation
Indices: 69599761--69600055 Score: 194
Period size: 49 Copynumber: 6.2 Consensus size: 48
69599751 ATGTTGACGC
* * * * *
69599761 CATGTCCCAGACATGGTCTTACACTGGCTAGCACA--TCAAAGCCGATG
1 CATGTCCCAGACAT-GTCTTACACTAGCTTGTATATCTCAAGGCCGATG
* * * *
69599808 CCATGTCCCAGACAGGTCTTACAAT-GACTT-TCATATATCAAGGTCGATG
1 -CATGTCCCAGACATGTCTTACACTAG-CTTGT-ATATCTCAAGGCCGATG
* * * * * * * *
69599857 CCGTGTCTCAGATAGGTCTTACACTAGCTT-TCATCTATC-GGTGTCGATG
1 -CATGTCCCAGACATGTCTTACACTAGCTTGT-ATATCTCAAG-GCCGATG
* *
69599906 CCATGTCCCAGACAAGTCTTACACTAGCTTGTATATCTCGAGGCCGATG
1 -CATGTCCCAGACATGTCTTACACTAGCTTGTATATCTCAAGGCCGATG
* * * ** * *
69599955 CATGTCCCAGACATGTCTTATAGTAGC-TCT-CGTCTCAATGTCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTTGTATATCTCAAGGCCGATG
* * *
69600001 CATGTCCTAGAC-TATCTTACACTAGCTTGTATATCTCAAGACCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTTGTATATCTCAAGGCCGATG
69600048 CATGTCCC
1 CATGTCCC
69600056 GTATATCTCT
Statistics
Matches: 196, Mismatches: 41, Indels: 21
0.76 0.16 0.08
Matches are distributed among these distances:
45 11 0.06
46 25 0.13
47 33 0.17
48 38 0.19
49 86 0.44
50 3 0.02
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.29
Consensus pattern (48 bp):
CATGTCCCAGACATGTCTTACACTAGCTTGTATATCTCAAGGCCGATG
Found at i:69600048 original size:47 final size:46
Alignment explanation
Indices: 69599901--69600055 Score: 152
Period size: 46 Copynumber: 3.3 Consensus size: 46
69599891 CTATCGGTGT
* *
69599901 CGATGCCATGTCCCAGACAAGTCTTACACTAGCTTGTATATCTCGAGGC
1 CGATG-CATGTCCCAGACTA-TCTTACACTAGCTTGTATATCTC-AAGC
* * * * ** *
69599950 CGATGCATGTCCCAGACATGTCTTATAGTAGC-TCT-CGTCTCAATGT
1 CGATGCATGTCCCAGAC-TATCTTACACTAGCTTGTATATCTCAA-GC
*
69599996 CGATGCATGTCCTAGACTATCTTACACTAGCTTGTATATCTCAAGAC
1 CGATGCATGTCCCAGACTATCTTACACTAGCTTGTATATCTCAAG-C
69600043 CGATGCATGTCCC
1 CGATGCATGTCCC
69600056 GTATATCTCT
Statistics
Matches: 83, Mismatches: 18, Indels: 12
0.73 0.16 0.11
Matches are distributed among these distances:
45 12 0.14
46 24 0.29
47 20 0.24
48 22 0.27
49 5 0.06
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.30
Consensus pattern (46 bp):
CGATGCATGTCCCAGACTATCTTACACTAGCTTGTATATCTCAAGC
Found at i:69600093 original size:93 final size:92
Alignment explanation
Indices: 69599898--69600116 Score: 221
Period size: 93 Copynumber: 2.3 Consensus size: 92
69599888 CATCTATCGG
* * * *
69599898 TGTCGATGCCATGTCCCAGACAAGTCTTACACTAGCTTGTATATCTCGAGGCCGATGCATGTCCC
1 TGTCGATG-CATGTCCTAGACTA-TCTTACACTAGCTTGTATATCTCAAGACCGATGCATGTCCC
* * * *
69599963 AGACATGTCTTATAGTAGCTCTCGTCTCAA
64 AGACATCTCTTACACTAGCTCTCG-ATCAA
69599993 TGTCGATGCATGTCCTAGACTATCTTACACTAGCTTGTATATCTCAAGACCGATGCATGTCCC-G
1 TGTCGATGCATGTCCTAGACTATCTTACACTAGCTTGTATATCTCAAGACCGATGCATGTCCCAG
* * *
69600057 TATATCTCTTGCACTGGCTCTC-AT-AA
66 -ACATCTCTTACACTAGCTCTCGATCAA
*
69600083 TGTGGCCGATGCATGT-CTCAGACATGTCTTACAC
1 TGT---CGATGCATGTCCT-AGAC-TATCTTACAC
69600117 AAGCACACGT
Statistics
Matches: 106, Mismatches: 12, Indels: 13
0.81 0.09 0.10
Matches are distributed among these distances:
90 5 0.05
91 1 0.01
92 3 0.03
93 68 0.64
94 21 0.20
95 8 0.08
ACGTcount: A:0.23, C:0.27, G:0.19, T:0.31
Consensus pattern (92 bp):
TGTCGATGCATGTCCTAGACTATCTTACACTAGCTTGTATATCTCAAGACCGATGCATGTCCCAG
ACATCTCTTACACTAGCTCTCGATCAA
Found at i:69609478 original size:41 final size:41
Alignment explanation
Indices: 69609421--69609570 Score: 185
Period size: 41 Copynumber: 3.7 Consensus size: 41
69609411 TCGGGGTTTA
69609421 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
* *
69609462 AATCCGAGCTTGGTCTCAAAGGGCTTTTAAGCCAGTGTCAT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
* * * * * * * * * *
69609503 AA-CTGAACCTAGTTTCGAAGGGCCTTCGGGCGAATGTCAT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
69609543 AATCCGAGCTTGGTCTCGAAGGGCTTTT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTT
69609571 TGAGTCAGCG
Statistics
Matches: 87, Mismatches: 21, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
40 28 0.32
41 59 0.68
ACGTcount: A:0.22, C:0.22, G:0.27, T:0.29
Consensus pattern (41 bp):
AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
Found at i:69617588 original size:41 final size:41
Alignment explanation
Indices: 69617526--69617675 Score: 185
Period size: 41 Copynumber: 3.7 Consensus size: 41
69617516 TCGGGCTTTA
*
69617526 AATCTGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
*
69617567 AATCCGAGCTTGGTCTCGAAGGGCTTTTAAGCCAGTGTCAT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
* * * * * * * * * *
69617608 AA-CTGAACCTAGTTTCGAAGGGCCTTCGGGCGAATGTCAT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
69617648 AATCCGAGCTTGGTCTCGAAGGGCTTTT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTT
69617676 TGAGTCAGCG
Statistics
Matches: 88, Mismatches: 20, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
40 29 0.33
41 59 0.67
ACGTcount: A:0.21, C:0.21, G:0.28, T:0.29
Consensus pattern (41 bp):
AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
Found at i:69622782 original size:7 final size:7
Alignment explanation
Indices: 69622744--69622781 Score: 69
Period size: 7 Copynumber: 5.6 Consensus size: 7
69622734 AATTTTGACT
69622744 AAAATAG
1 AAAATAG
69622751 AAAATAG
1 AAAATAG
69622758 AAAATAG
1 AAAATAG
69622765 AAAATAG
1 AAAATAG
69622772 AAAA-AG
1 AAAATAG
69622778 AAAA
1 AAAA
69622782 AGATGTCATC
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
6 6 0.19
7 25 0.81
ACGTcount: A:0.76, C:0.00, G:0.13, T:0.11
Consensus pattern (7 bp):
AAAATAG
Found at i:69624859 original size:68 final size:66
Alignment explanation
Indices: 69624786--69625007 Score: 268
Period size: 68 Copynumber: 3.3 Consensus size: 66
69624776 CATTATGTGT
* *
69624786 ACAAGA-AGGCTACGAGATACTATATAGTAGCTAGGTCACATGTGTGATACGGGATGTATCCCAT
1 ACAAGAGA-GCTACGAGAGA-TAAAT-GTAGCTAGGTCACATGTGTGATACGGGATGTATCCCAT
69624850 GTAG
63 GTAG
69624854 ACAAGAGAGCTACGTGAGAGATAAATGTAGCTAGGTCACATGTGTGATACGGGATGTATCCCATG
1 ACAAGAGAGCTAC--GAGAGATAAATGTAGCTAGGTCACATGTGTGATACGGGATGTATCCCATG
69624919 TAG
64 TAG
* * * * * * *
69624922 ACAAGAGAGCTACGTGAGATAAATGTAGCTAGGTCGCATGAGTGATTCCAAGTGAAGGA-CACCA
1 ACAAGAGAGCTACGAGAGATAAATGTAGCTAGGTCACATGTGTGA-T--ACGGGATGTATC-CCA
69624986 TGTAG
62 TGTAG
69624991 ACAAGAGAGCTACGAGA
1 ACAAGAGAGCTACGAGA
69625008 TAAATCGGCT
Statistics
Matches: 137, Mismatches: 10, Indels: 13
0.86 0.06 0.08
Matches are distributed among these distances:
66 29 0.21
67 1 0.01
68 67 0.49
69 35 0.26
70 5 0.04
ACGTcount: A:0.34, C:0.16, G:0.28, T:0.22
Consensus pattern (66 bp):
ACAAGAGAGCTACGAGAGATAAATGTAGCTAGGTCACATGTGTGATACGGGATGTATCCCATGTA
G
Found at i:69625041 original size:66 final size:67
Alignment explanation
Indices: 69624846--69625041 Score: 206
Period size: 66 Copynumber: 2.9 Consensus size: 67
69624836 GGGATGTATC
* * *
69624846 CCATGTAGACAAGAGAGCTACGTGAGAGATAAATGTAGCTAGGTCACATGTGTGATA-C--GGGA
1 CCATGTAGACAAGAGAGCTAC--G-GAGATAAATG-AGCTAGGTCGCATGAGTGATACCAAGTGA
* *
69624908 TGTATC-
62 AGGA-CA
*
69624914 CCATGTAGACAAGAGAGCTACGTGAGATAAATGTAGCTAGGTCGCATGAGTGATTCCAAGTGAAG
1 CCATGTAGACAAGAGAGCTACG-GAGATAAATG-AGCTAGGTCGCATGAGTGATACCAAGTGAAG
69624979 GACA
64 GACA
* *
69624983 CCATGTAGACAAGAGAGCTAC-GAGATAAATCG-GCTAGGTCGCATGAGTGGTACTAAGTG
1 CCATGTAGACAAGAGAGCTACGGAGATAAAT-GAGCTAGGTCGCATGAGTGATACCAAGTG
69625042 TTCACCATGT
Statistics
Matches: 113, Mismatches: 10, Indels: 12
0.84 0.07 0.09
Matches are distributed among these distances:
66 54 0.48
67 10 0.09
68 23 0.20
69 26 0.23
ACGTcount: A:0.33, C:0.16, G:0.30, T:0.21
Consensus pattern (67 bp):
CCATGTAGACAAGAGAGCTACGGAGATAAATGAGCTAGGTCGCATGAGTGATACCAAGTGAAGGA
CA
Found at i:69632426 original size:68 final size:67
Alignment explanation
Indices: 69632379--69632536 Score: 280
Period size: 68 Copynumber: 2.3 Consensus size: 67
69632369 ATACTATATA
69632379 GTAGCTAGGTCACATGTGTGATACGGGATGTATCCCATGTAGACAAGAGAGCTACGTGAGAGATA
1 GTAGCTAGGTCACATGTGTGATACGGGATGTATCCCATGTAGACAAGAGAGCTAC-TGAGAGATA
69632444 AAT
65 AAT
69632447 GTAGCTAGGTCACATGTGTGATACGGGATGTATCCCATGTAGACAAGAGAGCTACCTGAGAGATA
1 GTAGCTAGGTCACATGTGTGATACGGGATGTATCCCATGTAGACAAGAGAGCTA-CTGAGAGATA
69632512 AAT
65 AAT
* *
69632515 GTAGCTAGGTCGCATGAGTGAT
1 GTAGCTAGGTCACATGTGTGAT
69632537 TCCAAGTGAA
Statistics
Matches: 87, Mismatches: 2, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
68 86 0.99
69 1 0.01
ACGTcount: A:0.31, C:0.15, G:0.30, T:0.24
Consensus pattern (67 bp):
GTAGCTAGGTCACATGTGTGATACGGGATGTATCCCATGTAGACAAGAGAGCTACTGAGAGATAA
AT
Found at i:69632610 original size:66 final size:68
Alignment explanation
Indices: 69632413--69632610 Score: 203
Period size: 68 Copynumber: 2.9 Consensus size: 68
69632403 GGGATGTATC
* * *
69632413 CCATGTAGACAAGAGAGCTACGTGAGAGATAAATGTAGCTAGGTCACATGTGTGATA-C--GGGA
1 CCATGTAGACAAGAGAGCTAC-T-AGAGATAAATG-AGCTAGGTCGCATGAGTGATACCAAGTGA
* *
69632475 TGTATC-
63 AGGA-CA
*
69632481 CCATGTAGACAAGAGAGCTACCTGAGAGATAAATGTAGCTAGGTCGCATGAGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTA-CT-AGAGATAAATG-AGCTAGGTCGCATGAGTGATACCAAGTGA
69632546 AGGACA
63 AGGACA
* *
69632552 CCATGTAGACAAGAGAGCTA-T-GAGATAAATCG-GCTAGGTCGCATGAGTGGTACTAAGTG
1 CCATGTAGACAAGAGAGCTACTAGAGATAAAT-GAGCTAGGTCGCATGAGTGATACCAAGTG
69632611 TTCACCATGT
Statistics
Matches: 115, Mismatches: 9, Indels: 14
0.83 0.07 0.10
Matches are distributed among these distances:
66 24 0.21
67 9 0.08
68 53 0.46
69 3 0.03
70 1 0.01
71 25 0.22
ACGTcount: A:0.33, C:0.16, G:0.29, T:0.22
Consensus pattern (68 bp):
CCATGTAGACAAGAGAGCTACTAGAGATAAATGAGCTAGGTCGCATGAGTGATACCAAGTGAAGG
ACA
Found at i:69637497 original size:46 final size:46
Alignment explanation
Indices: 69637389--69637506 Score: 130
Period size: 46 Copynumber: 2.6 Consensus size: 46
69637379 TCTCGAGGCT
* * **
69637389 GATGTATGTCCCAGACATGTCTTACACTAGCTCTCATCTTAATGTC
1 GATGCATGTCCCAGACATGTCTTACACTAGCTCTAATAATAATGTC
* * * *
69637435 GATGCCTGTTCTAGACATGTCTTACACTAGCTCTAATAAT-GTGGTC
1 GATGCATGTCCCAGACATGTCTTACACTAGCTCTAATAATAAT-GTC
**
69637481 TCTGCATGTCCCAGACATGTCTTACA
1 GATGCATGTCCCAGACATGTCTTACA
69637507 TTGACACACA
Statistics
Matches: 58, Mismatches: 13, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
45 1 0.02
46 57 0.98
ACGTcount: A:0.24, C:0.25, G:0.17, T:0.34
Consensus pattern (46 bp):
GATGCATGTCCCAGACATGTCTTACACTAGCTCTAATAATAATGTC
Found at i:69647192 original size:29 final size:29
Alignment explanation
Indices: 69647159--69647217 Score: 109
Period size: 29 Copynumber: 2.0 Consensus size: 29
69647149 GAATTAGAAG
*
69647159 TCTGAAGTTTTCTGGGACTCGCTGGTTAT
1 TCTGAAGTTTTCTGGGACTCACTGGTTAT
69647188 TCTGAAGTTTTCTGGGACTCACTGGTTAT
1 TCTGAAGTTTTCTGGGACTCACTGGTTAT
69647217 T
1 T
69647218 ACAGATGGTT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.15, C:0.17, G:0.25, T:0.42
Consensus pattern (29 bp):
TCTGAAGTTTTCTGGGACTCACTGGTTAT
Found at i:69660811 original size:20 final size:20
Alignment explanation
Indices: 69660786--69660824 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
69660776 CTTTTTACAC
69660786 TTTAGTTTCTATTTAACAAT
1 TTTAGTTTCTATTTAACAAT
69660806 TTTAGTTTCTATTTAACAA
1 TTTAGTTTCTATTTAACAA
69660825 ATACACAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.31, C:0.10, G:0.05, T:0.54
Consensus pattern (20 bp):
TTTAGTTTCTATTTAACAAT
Found at i:69662740 original size:18 final size:18
Alignment explanation
Indices: 69662703--69662745 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
69662693 TCATTCATTC
***
69662703 TCTTTTCCTTTTTTGGTT
1 TCTTTTCCTTTTTCAATT
69662721 TCTTTTCCTTTTTCAATT
1 TCTTTTCCTTTTTCAATT
69662739 TCTTTTC
1 TCTTTTC
69662746 TCTCATTTCT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.05, C:0.21, G:0.05, T:0.70
Consensus pattern (18 bp):
TCTTTTCCTTTTTCAATT
Found at i:69666704 original size:49 final size:49
Alignment explanation
Indices: 69666644--69667092 Score: 732
Period size: 49 Copynumber: 9.3 Consensus size: 49
69666634 CAAGACAGTG
69666644 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
*
69666693 TATATATGTGATAAGGCCTAATGGCCGATGTGATAAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
69666742 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
*
69666789 TATATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
*
69666838 TATATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
*
69666887 TATATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
* *
69666936 TATATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAG-GTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
69666984 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
* * * * * * *
69667031 TATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
69667080 TA-A-ATGTGATAAG
1 TATATATGTGATAAG
69667093 TCCCGAAGGG
Statistics
Matches: 381, Mismatches: 14, Indels: 12
0.94 0.03 0.03
Matches are distributed among these distances:
47 94 0.25
48 47 0.12
49 240 0.63
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (49 bp):
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
Found at i:69666904 original size:145 final size:145
Alignment explanation
Indices: 69666640--69667089 Score: 744
Period size: 145 Copynumber: 3.1 Consensus size: 145
69666630 CAGCCAAGAC
*
69666640 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGAT
1 AGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGAT
*
69666705 AAGGCCTAATGGCCGATGTGATAAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGA
66 AAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGA
69666770 TGTGATGAATGTGAA
131 TGTGATGAATGTGAA
69666785 AGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGAT
1 AGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGAT
* *
69666850 GAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATGAGGCCTAATGGCCGA
66 AAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGA
69666915 TGTGATGAATGTGAA
131 TGTGATGAATGTGAA
*
69666930 AGTGTATATATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAG-GTGTATATATGTG
1 AGTG--TATATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTG
* * * *
69666994 ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGACAGGGCCGAGTGGCC
64 ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCC
* * *
69667057 AACGTGATGGATGTGAA
129 GATGTGATGAATGTGAA
*
69667074 AGTGTATAAATGTGAT
1 AGTGTATATATGTGAT
69667090 AAGTCCCGAA
Statistics
Matches: 288, Mismatches: 15, Indels: 7
0.93 0.05 0.02
Matches are distributed among these distances:
142 11 0.04
144 39 0.14
145 145 0.50
146 48 0.17
147 45 0.16
ACGTcount: A:0.31, C:0.08, G:0.30, T:0.30
Consensus pattern (145 bp):
AGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGAT
AAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGA
TGTGATGAATGTGAA
Found at i:69667267 original size:37 final size:37
Alignment explanation
Indices: 69667211--69667289 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
69667201 CCGAGCTCTA
* * *
69667211 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
69667248 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
69667285 AAGAC
1 AAGAC
69667290 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:69668827 original size:40 final size:40
Alignment explanation
Indices: 69668504--69668815 Score: 480
Period size: 40 Copynumber: 7.8 Consensus size: 40
69668494 GAGAATTGAG
69668504 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
69668544 AGTGATATATCTGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
69668584 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
69668624 AGTGATATATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * * *
69668664 AGTGATATATCCAGGTTAAATCCCGGAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
69668704 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* **
69668744 AGTGATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
69668784 GGTGTTATATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCA
69668816 ATCATGCTGG
Statistics
Matches: 243, Mismatches: 29, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 243 1.00
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (40 bp):
AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:69673223 original size:27 final size:27
Alignment explanation
Indices: 69673193--69673370 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
69673183 ATATTGAGTC
* * * *
69673193 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
69673220 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
69673247 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
69673275 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
69673302 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
69673329 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
69673356 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
69673371 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:69673332 original size:82 final size:81
Alignment explanation
Indices: 69673214--69673369 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
69673204 TGCTATATAA
* *
69673214 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
69673279 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
69673296 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
69673360 CACTTAGTGC
65 CACTTAGTGC
69673370 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:69679362 original size:46 final size:46
Alignment explanation
Indices: 69679300--69679469 Score: 184
Period size: 46 Copynumber: 3.7 Consensus size: 46
69679290 GATATTTGGG
** *
69679300 CATCCGAACTTATTGAGTTGAATCCGAGTTCACTTATGGATGCGAA
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
* * * * *
69679346 CATCTGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGG
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-A
*
69679393 CATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
* *
69679439 CATCCGAACTCGTTGAGTTGATTCCAAGTTC
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTC
69679470 GTGAAATGTA
Statistics
Matches: 100, Mismatches: 17, Indels: 14
0.76 0.13 0.11
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 57 0.57
47 31 0.31
48 2 0.02
50 4 0.04
ACGTcount: A:0.25, C:0.21, G:0.24, T:0.30
Consensus pattern (46 bp):
CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
Found at i:69679412 original size:47 final size:47
Alignment explanation
Indices: 69679346--69679517 Score: 199
Period size: 47 Copynumber: 3.7 Consensus size: 47
69679336 TGGATGCGAA
*
69679346 CATCTGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGG
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGG
* * * * *
69679393 CATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-A
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGG
* * *
69679439 CATCCGAACTCGTTGAGTTGATTCCAAGTTCGTGAAATGTAACTAGG
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGG
*
69679486 CGTCCGAACTCGTTGAGTTGAGTCCGAGTTCG
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCG
69679518 CTTATGGGCG
Statistics
Matches: 101, Mismatches: 17, Indels: 14
0.77 0.13 0.11
Matches are distributed among these distances:
43 3 0.03
45 2 0.02
46 30 0.30
47 60 0.59
48 2 0.02
50 4 0.04
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.29
Consensus pattern (47 bp):
CATCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGG
Found at i:69679457 original size:93 final size:93
Alignment explanation
Indices: 69679298--69679524 Score: 373
Period size: 93 Copynumber: 2.4 Consensus size: 93
69679288 CGGATATTTG
* * *
69679298 GGCATCCGAACTTATTGAGTTGAATCCGAGTTCACTTATGGATGCGAACATCTGAACTCGTTGAG
1 GGCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACATCCGAACTCGTTGAG
* *
69679363 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCAAGTTCGTGAAATGTAACTA
69679391 GGCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACATCCGAACTCGTTGAG
1 GGCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACATCCGAACTCGTTGAG
*
69679456 TTGATTCCAAGTTCGTGAAATGTAACTA
66 TTGAGTCCAAGTTCGTGAAATGTAACTA
* * *
69679484 GGCGTCCGAACTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 GGCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGG
69679525 GCGGGTTACA
Statistics
Matches: 125, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
93 125 1.00
ACGTcount: A:0.24, C:0.20, G:0.26, T:0.30
Consensus pattern (93 bp):
GGCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACATCCGAACTCGTTGAG
TTGAGTCCAAGTTCGTGAAATGTAACTA
Found at i:69685329 original size:46 final size:46
Alignment explanation
Indices: 69685277--69685446 Score: 202
Period size: 46 Copynumber: 3.7 Consensus size: 46
69685267 GATATTTGGG
* *
69685277 CATCCGAACTTGTTGAGTTGAATCCGAGTTCACTTATGGATGCGAA
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
* * * *
69685323 CATCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGG
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-A
*
69685370 CATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
* *
69685416 CATCCGAACTCGTTGAGTTGATTCCAAGTTC
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTC
69685447 GTGAAATGTA
Statistics
Matches: 103, Mismatches: 14, Indels: 14
0.79 0.11 0.11
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 59 0.57
47 32 0.31
48 2 0.02
50 4 0.04
ACGTcount: A:0.25, C:0.21, G:0.25, T:0.29
Consensus pattern (46 bp):
CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
Found at i:69685389 original size:47 final size:47
Alignment explanation
Indices: 69685323--69685494 Score: 208
Period size: 47 Copynumber: 3.7 Consensus size: 47
69685313 TGGATGCGAA
69685323 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGG
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGG
* * * * *
69685370 CATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-A
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGG
* * *
69685416 CATCCGAACTCGTTGAGTTGATTCCAAGTTCGTGAAATGTAACTAGG
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGG
*
69685463 CGTCCGAACTCGTTGAGTTGAGTCCGAGTTCG
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCG
69685495 CTTATGGGCG
Statistics
Matches: 102, Mismatches: 16, Indels: 14
0.77 0.12 0.11
Matches are distributed among these distances:
43 3 0.03
45 2 0.02
46 30 0.29
47 61 0.60
48 2 0.02
50 4 0.04
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (47 bp):
CATCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGG
Found at i:69685434 original size:93 final size:93
Alignment explanation
Indices: 69685275--69685501 Score: 382
Period size: 93 Copynumber: 2.4 Consensus size: 93
69685265 CGGATATTTG
* *
69685275 GGCATCCGAACTTGTTGAGTTGAATCCGAGTTCACTTATGGATGCGAACATCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACATCCGAACTCGTTGAG
* *
69685340 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCAAGTTCGTGAAATGTAACTA
*
69685368 GGCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACATCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACATCCGAACTCGTTGAG
*
69685433 TTGATTCCAAGTTCGTGAAATGTAACTA
66 TTGAGTCCAAGTTCGTGAAATGTAACTA
* *
69685461 GGCGTCCGAACTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
69685502 GCGGGTTACA
Statistics
Matches: 125, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
93 125 1.00
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.29
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACATCCGAACTCGTTGAG
TTGAGTCCAAGTTCGTGAAATGTAACTA
Found at i:69692518 original size:49 final size:50
Alignment explanation
Indices: 69692454--69692685 Score: 279
Period size: 49 Copynumber: 4.7 Consensus size: 50
69692444 TTGGTACGCA
* * *
69692454 TAGTAGCCTGCACTTAGTACTACACATGCGAGC-AATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCGAATTATCCGGTACACG
* * ** * *
69692503 TAGTAGCCTGCACTTAGTACTACGCACGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCGAATTATCCGGTACACG
* * * *
69692553 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCGAA-TTATCCGGTACACG
* * *
69692604 TAGTAGCCTGCACTTATTACTACACATGAGACC-AATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCGAATTATCCGGTACACG
* *
69692653 TAGTAGCCTACACTTAGTACTACATACGTGACC
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC
69692686 TCACAATAGA
Statistics
Matches: 152, Mismatches: 29, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
49 68 0.45
50 47 0.31
51 37 0.24
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.25
Consensus pattern (50 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCGAATTATCCGGTACACG
Found at i:69692682 original size:100 final size:99
Alignment explanation
Indices: 69692454--69692683 Score: 291
Period size: 100 Copynumber: 2.3 Consensus size: 99
69692444 TTGGTACGCA
* * *
69692454 TAGTAGCCTGCACTTAGTACTACACATGCGAGCAATTATCCGGTACACGTAGTAGCCTGCACTTA
1 TAGTAGCCTGCACTTAGTACTACACACGTGAGCAATTATCCGGTACACATAGTAGCCTGCACTTA
* * *
69692519 GTACTACGCACGTGACCTAACCATCTGATACACG
66 GTACTACACACGAGACCTAACCATCCGATACACG
* * *
69692553 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCGGGTACGCATAGTAGCCTGCACT
1 TAGTAGCCTGCACTTAGTACTACACACGTGAGC-AA-TTATCCGGTACACATAGTAGCCTGCACT
* * ** *
69692618 TATTACTACACATGAGACC-AATTATCCGGTACACG
64 TAGTACTACACACGAGACCTAACCATCCGATACACG
* *
69692653 TAGTAGCCTACACTTAGTACTACATACGTGA
1 TAGTAGCCTGCACTTAGTACTACACACGTGA
69692684 CCTCACAATA
Statistics
Matches: 113, Mismatches: 16, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
99 30 0.27
100 43 0.38
101 40 0.35
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.26
Consensus pattern (99 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGAGCAATTATCCGGTACACATAGTAGCCTGCACTTA
GTACTACACACGAGACCTAACCATCCGATACACG
Found at i:69702477 original size:29 final size:29
Alignment explanation
Indices: 69702412--69702535 Score: 198
Period size: 29 Copynumber: 4.3 Consensus size: 29
69702402 AAGTTTACAT
* *
69702412 ACATGCAT-TGGCCCACTAGGCCC-AATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
*
69702439 TCATTCATATGGCCCATTAGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
69702468 ACATTCATATGGCCCATTAGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
*
69702497 ACATTCATATGGCCTATTAGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
69702526 ACATTCATAT
1 ACATTCATAT
69702536 TCATGCTTTC
Statistics
Matches: 90, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
27 6 0.07
28 14 0.16
29 70 0.78
ACGTcount: A:0.30, C:0.31, G:0.14, T:0.26
Consensus pattern (29 bp):
ACATTCATATGGCCCATTAGGCCCAAATC
Found at i:69702772 original size:16 final size:16
Alignment explanation
Indices: 69702751--69702781 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
69702741 CAAACTTTTA
69702751 GCTTTTCGACATTTCT
1 GCTTTTCGACATTTCT
*
69702767 GCTTTTCGATATTTC
1 GCTTTTCGACATTTC
69702782 GGGATTTGCC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.13, C:0.23, G:0.13, T:0.52
Consensus pattern (16 bp):
GCTTTTCGACATTTCT
Found at i:69715732 original size:34 final size:34
Alignment explanation
Indices: 69715686--69715775 Score: 92
Period size: 34 Copynumber: 2.6 Consensus size: 34
69715676 TAGATCATTC
* **
69715686 TGGGCCTAAGCCCATATCAGTCGCAATAACAATG
1 TGGGCCTTAGCCCATATCAGTAACAATAACAATG
* * *
69715720 TGGGCCTTAGCCCA-ATACAGTAATAGTATCAATG
1 TGGGCCTTAGCCCATAT-CAGTAACAATAACAATG
* *
69715754 TGGGCCTTAGCCTATTTCAGTA
1 TGGGCCTTAGCCCATATCAGTA
69715776 TAGTATCCAA
Statistics
Matches: 46, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
33 2 0.04
34 43 0.93
35 1 0.02
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.27
Consensus pattern (34 bp):
TGGGCCTTAGCCCATATCAGTAACAATAACAATG
Found at i:69728784 original size:40 final size:40
Alignment explanation
Indices: 69728723--69728798 Score: 107
Period size: 40 Copynumber: 1.9 Consensus size: 40
69728713 CGATACTTTA
* * *
69728723 TGGTGTGTAGGGTTGGATGGGTCGATTTTATCCCCATATT
1 TGGTGTATAGGGATGGATGGGTCGATTTTATACCCATATT
* *
69728763 TGGTGTATAGGGATGGGTGGGTTGATTTTATACCCA
1 TGGTGTATAGGGATGGATGGGTCGATTTTATACCCA
69728799 CATGGTGTGT
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 31 1.00
ACGTcount: A:0.17, C:0.11, G:0.34, T:0.38
Consensus pattern (40 bp):
TGGTGTATAGGGATGGATGGGTCGATTTTATACCCATATT
Found at i:69728805 original size:38 final size:38
Alignment explanation
Indices: 69728722--69728806 Score: 98
Period size: 40 Copynumber: 2.2 Consensus size: 38
69728712 ACGATACTTT
* * * *
69728722 ATGGTGTGTAGGGTTGGATGGGTCGATTTTATCCCCAT
1 ATGGTGTATAGGGATGGATGGGTCGATTTTATACCCAC
* *
69728760 ATTTGGTGTATAGGGATGGGTGGGTTGATTTTATACCCAC
1 A--TGGTGTATAGGGATGGATGGGTCGATTTTATACCCAC
69728800 ATGGTGT
1 ATGGTGT
69728807 GTTAGGTTGG
Statistics
Matches: 39, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
38 7 0.18
40 32 0.82
ACGTcount: A:0.18, C:0.11, G:0.34, T:0.38
Consensus pattern (38 bp):
ATGGTGTATAGGGATGGATGGGTCGATTTTATACCCAC
Found at i:69729600 original size:6 final size:6
Alignment explanation
Indices: 69729589--69729628 Score: 59
Period size: 6 Copynumber: 7.2 Consensus size: 6
69729579 ACCTCCAATC
69729589 ACAAAA ACAAAA AC--AA A-AAAA ACAAAA ACAAAA ACAAAA A
1 ACAAAA ACAAAA ACAAAA ACAAAA ACAAAA ACAAAA ACAAAA A
69729629 AACCAATCGA
Statistics
Matches: 31, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
4 3 0.10
5 3 0.10
6 25 0.81
ACGTcount: A:0.85, C:0.15, G:0.00, T:0.00
Consensus pattern (6 bp):
ACAAAA
Found at i:69729609 original size:15 final size:15
Alignment explanation
Indices: 69729591--69729631 Score: 66
Period size: 15 Copynumber: 2.8 Consensus size: 15
69729581 CTCCAATCAC
69729591 AAAAACAAAAACAAA
1 AAAAACAAAAACAAA
69729606 AAAAACAAAAACAAA
1 AAAAACAAAAACAAA
*
69729621 AACAA-AAAAAC
1 AAAAACAAAAAC
69729632 CAATCGAATA
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
14 6 0.24
15 19 0.76
ACGTcount: A:0.85, C:0.15, G:0.00, T:0.00
Consensus pattern (15 bp):
AAAAACAAAAACAAA
Found at i:69729613 original size:21 final size:21
Alignment explanation
Indices: 69729589--69729630 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
69729579 ACCTCCAATC
69729589 ACAAAAACAAAAACAAAAAAA
1 ACAAAAACAAAAACAAAAAAA
69729610 ACAAAAACAAAAACAAAAAAA
1 ACAAAAACAAAAACAAAAAAA
69729631 CCAATCGAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.86, C:0.14, G:0.00, T:0.00
Consensus pattern (21 bp):
ACAAAAACAAAAACAAAAAAA
Found at i:69729796 original size:7 final size:7
Alignment explanation
Indices: 69729778--69729807 Score: 51
Period size: 7 Copynumber: 4.1 Consensus size: 7
69729768 ATGAATATTT
69729778 ATATATAA
1 ATATA-AA
69729786 ATATAAA
1 ATATAAA
69729793 ATATAAA
1 ATATAAA
69729800 ATATAAA
1 ATATAAA
69729807 A
1 A
69729808 ATTATATTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
7 17 0.77
8 5 0.23
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (7 bp):
ATATAAA
Found at i:69733711 original size:29 final size:30
Alignment explanation
Indices: 69733679--69733741 Score: 78
Period size: 28 Copynumber: 2.2 Consensus size: 30
69733669 TAATAAAAAA
69733679 TAAAAAAAT-TAAAAATTCTAAAGAATATT-
1 TAAAAAAATGTAAAAATTCTAAA-AATATTC
* *
69733708 T-AAAAAATGTTAAAATTTTAAAAATATTC
1 TAAAAAAATGTAAAAATTCTAAAAATATTC
69733737 TAAAA
1 TAAAA
69733742 TAATAATTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
28 13 0.45
29 13 0.45
30 3 0.10
ACGTcount: A:0.60, C:0.03, G:0.03, T:0.33
Consensus pattern (30 bp):
TAAAAAAATGTAAAAATTCTAAAAATATTC
Found at i:69733733 original size:28 final size:29
Alignment explanation
Indices: 69733681--69733741 Score: 81
Period size: 29 Copynumber: 2.1 Consensus size: 29
69733671 ATAAAAAATA
69733681 AAAAAATTAAAAATTCTAAAGAATATT-T
1 AAAAAATTAAAAATTCTAAAGAATATTCT
* *
69733709 AAAAAATGTTAAAATTTTAAA-AATATTCT
1 AAAAAAT-TAAAAATTCTAAAGAATATTCT
69733738 AAAA
1 AAAA
69733742 TAATAATTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
28 13 0.45
29 16 0.55
ACGTcount: A:0.61, C:0.03, G:0.03, T:0.33
Consensus pattern (29 bp):
AAAAAATTAAAAATTCTAAAGAATATTCT
Found at i:69734590 original size:23 final size:24
Alignment explanation
Indices: 69734564--69734608 Score: 74
Period size: 23 Copynumber: 1.9 Consensus size: 24
69734554 AAATAAGGAG
69734564 AAAAGAACAAAAA-AAATAACATT
1 AAAAGAACAAAAACAAATAACATT
*
69734587 AAAATAACAAAAACAAATAACA
1 AAAAGAACAAAAACAAATAACA
69734609 GATTTTTTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 12 0.60
24 8 0.40
ACGTcount: A:0.76, C:0.11, G:0.02, T:0.11
Consensus pattern (24 bp):
AAAAGAACAAAAACAAATAACATT
Found at i:69735978 original size:20 final size:20
Alignment explanation
Indices: 69735953--69735997 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
69735943 AGGGACTAAA
*
69735953 ATGAAAAGTTATAAAATTTG
1 ATGAAAAATTATAAAATTTG
* *
69735973 ATGAAAAATTATGAAATTTT
1 ATGAAAAATTATAAAATTTG
69735993 ATGAA
1 ATGAA
69735998 TACATGTGCT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.51, C:0.00, G:0.13, T:0.36
Consensus pattern (20 bp):
ATGAAAAATTATAAAATTTG
Found at i:69737454 original size:22 final size:22
Alignment explanation
Indices: 69737426--69737475 Score: 84
Period size: 22 Copynumber: 2.3 Consensus size: 22
69737416 TATGCCATGA
69737426 TGAATGATGGAA-TTGTCTATTT
1 TGAATGAT-GAATTTGTCTATTT
69737448 TGAATGATGAATTTGTCTATTT
1 TGAATGATGAATTTGTCTATTT
69737470 TGAATG
1 TGAATG
69737476 TTTGGATTGG
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
21 3 0.11
22 24 0.89
ACGTcount: A:0.28, C:0.04, G:0.22, T:0.46
Consensus pattern (22 bp):
TGAATGATGAATTTGTCTATTT
Found at i:69741109 original size:40 final size:40
Alignment explanation
Indices: 69741065--69741236 Score: 222
Period size: 40 Copynumber: 4.3 Consensus size: 40
69741055 GGACTAAGAT
*
69741065 CCGAAGGCATTTGTGCGAGATAC-AAATTCCGGGTTAAGCC
1 CCGAAGGCATTTGTGCGAGATACTAAA-TCCGGGTTAAGTC
*
69741105 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGATACTAAATCCGGGTTAAGTC
* * * *
69741145 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTC
1 CCGAAGGCATTTGTGCGAGATACTAAATCCGGGTTAAGTC
* * * * *
69741185 CCGAAGGCA-TTGTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTTGTGCGAGATACTAAATCCGGGTTAAGTC
69741224 CCGAAGGCATTTG
1 CCGAAGGCATTTG
69741237 AACGAGGAGC
Statistics
Matches: 118, Mismatches: 12, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
39 34 0.29
40 81 0.69
41 3 0.03
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCGAGATACTAAATCCGGGTTAAGTC
Found at i:69741150 original size:80 final size:79
Alignment explanation
Indices: 69741065--69741236 Score: 220
Period size: 79 Copynumber: 2.2 Consensus size: 79
69741055 GGACTAAGAT
*
69741065 CCGAAGGCATTTGTGCGAGATA-CAAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACT
1 CCGAAGGCATTTGTGCGAGATATCAAA-TCCGGGTTAAGCCCCGAAGG-CATTGTGCGAGATACT
* *
69741129 AAATCCGGGTTAAGTC
64 AAAACCGGGCTAAGTC
* * * * * * *
69741145 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATATCAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA
*
69741210 AACCGGGCTATGTC
66 AACCGGGCTAAGTC
69741224 CCGAAGGCATTTG
1 CCGAAGGCATTTG
69741237 AACGAGGAGC
Statistics
Matches: 79, Mismatches: 12, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
79 38 0.48
80 38 0.48
81 3 0.04
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATATCAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA
AACCGGGCTAAGTC
Found at i:69741254 original size:79 final size:80
Alignment explanation
Indices: 69741092--69741269 Score: 191
Period size: 79 Copynumber: 2.2 Consensus size: 80
69741082 AGATACAAAT
* * * *
69741092 TCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
** * *
69741157 GTGCGAGTTATTAAA
66 GAACGAGTGACTAAA
* * * * *
69741172 TCCGGGTTATGTCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
*
69741236 GAACGAG-GAGCTATA
66 GAACGAGTGA-CTAAA
*
69741251 TCC-GGTTAAATCCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
69741270 TACGTGATTT
Statistics
Matches: 81, Mismatches: 16, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
78 15 0.19
79 48 0.59
80 18 0.22
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
GAACGAGTGACTAAA
Found at i:69752372 original size:46 final size:47
Alignment explanation
Indices: 69752227--69752532 Score: 222
Period size: 46 Copynumber: 6.5 Consensus size: 47
69752217 TTTGTGCGCT
* *
69752227 AGTGTAAGACATGTCTGGGACATGCATCAGCCAT--ATTATG-AGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCC-TCGA-GATGTAGAGCC
* * * * * *
69752273 AATGTAAGACCATGTTTGGGACATGACATCGGCATTGAGACG-AGAGCT
1 AGTGTAAGA-CATGTCTGGGACATG-CATCGGCCTCGAGATGTAGAGCC
*
69752321 AGTGTAAGACATGTATGGGACATGCATCGGCCTCGAGATGTA-AGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGTAGAGCC
* * * *
69752367 AGTGTAAGACATGTCTAGAACATGCATCGG-CTACAAGATGT---GTC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCT-CGAGATGTAGAGCC
* * * ** *
69752411 AGTGTGAGACCATGTTTGGGACATGGCATTGG-GACGAATATGTGAGAGCC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCG-AGATGT-AGAGCC
* * *
69752461 AGTGTAAGACCATGTCTGGGACATGGCATC-GACTTGACATGT-GAGCC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGATGTAGAGCC
69752508 AGTGTAAGACTATGTCTGGGACATG
1 AGTGTAAGAC-ATGTCTGGGACATG
69752533 GGATCGGCAT
Statistics
Matches: 210, Mismatches: 35, Indels: 30
0.76 0.13 0.11
Matches are distributed among these distances:
44 10 0.05
45 14 0.07
46 71 0.34
47 57 0.27
48 21 0.10
49 7 0.03
50 30 0.14
ACGTcount: A:0.29, C:0.18, G:0.30, T:0.24
Consensus pattern (47 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGTAGAGCC
Found at i:69752525 original size:47 final size:46
Alignment explanation
Indices: 69752227--69752538 Score: 190
Period size: 47 Copynumber: 6.7 Consensus size: 46
69752217 TTTGTGCGCT
* * * *
69752227 AGTGTAAGACATGTCTGGGACAT-GCATCAGCCAT-ATTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGGCATC-GACTTGA-CATGTGAGCC
* * * * * * * *
69752273 AATGTAAGACCATGTTTGGGACATGACATCGGCATTGAGACGAGAGCT
1 AGTGTAAGA-CATGTCTGGGACATGGCATCGAC-TTGACATGTGAGCC
* * * * *
69752321 AGTGTAAGACATGTATGGGACAT-GCATCGGCCTCGAGATGTAAGCC
1 AGTGTAAGACATGTCTGGGACATGGCATC-GACTTGACATGTGAGCC
* * * * * *
69752367 AGTGTAAGACATGTCTAGAACAT-GCATCGGC-T-ACAAGATGTGTC
1 AGTGTAAGACATGTCTGGGACATGGCATCGACTTGACATG-TGAGCC
* * * *
69752411 AGTGTGAGACCATGTTTGGGACATGGCATTGGGAC--GAATATGTGAGAGCC
1 AGTGTAAGA-CATGTCTGGGACATGGCA-T-CGACTTG-ACATGT--GAGCC
69752461 AGTGTAAGACCATGTCTGGGACATGGCATCGACTTGACATGTGAGCC
1 AGTGTAAGA-CATGTCTGGGACATGGCATCGACTTGACATGTGAGCC
*
69752508 AGTGTAAGACTATGTCTGGGACATGGGATCG
1 AGTGTAAGAC-ATGTCTGGGACATGGCATCG
69752539 GCATCATACC
Statistics
Matches: 207, Mismatches: 42, Indels: 33
0.73 0.15 0.12
Matches are distributed among these distances:
43 3 0.01
44 11 0.05
45 13 0.06
46 50 0.24
47 64 0.31
48 26 0.13
49 10 0.05
50 30 0.14
ACGTcount: A:0.29, C:0.18, G:0.30, T:0.24
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGGCATCGACTTGACATGTGAGCC
Found at i:69761812 original size:47 final size:48
Alignment explanation
Indices: 69761756--69762186 Score: 708
Period size: 47 Copynumber: 9.0 Consensus size: 48
69761746 AGTGTATACA
* *
69761756 TGATAATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAG
1 TGAT-ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
69761805 TGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
1 TG-ATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
* *
69761854 TG-TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAG
1 TGATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
69761901 TGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
1 TG-ATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
*
69761950 TG-TATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAG
1 TGATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
*
69761997 TGTATATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAG
1 TG-ATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
69762046 TG-TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
1 TGATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
* *
69762093 TG-TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAG
1 TGATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
*
69762140 TGTATATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAA
1 TG-ATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
69762187 TGTAACACCC
Statistics
Matches: 364, Mismatches: 11, Indels: 14
0.94 0.03 0.04
Matches are distributed among these distances:
47 182 0.50
49 180 0.49
50 2 0.01
ACGTcount: A:0.34, C:0.08, G:0.28, T:0.29
Consensus pattern (48 bp):
TGATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
Found at i:69761924 original size:96 final size:96
Alignment explanation
Indices: 69761761--69762186 Score: 748
Period size: 96 Copynumber: 4.4 Consensus size: 96
69761751 ATACATGATA
*
69761761 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGC
1 ATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGC
69761826 CTAATGGCCGATGTGATGAATGTGAAAGTGT
66 CTAATGGCCGATGTGATGAATGTGAAAGTGT
*
69761857 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGC
1 ATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGC
69761922 CTAATGGCCGATGTGATGAATGTGAAAGTGT
66 CTAATGGCCGATGTGATGAATGTGAAAGTGT
* *
69761953 ATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGC
1 ATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGC
*
69762018 CTAATAGCCGATGTGATGAATGTGAAAGTGT
66 CTAATGGCCGATGTGATGAATGTGAAAGTGT
*
69762049 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGC
1 ATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGC
* *
69762112 CGAATGGCCAATGTGATGAATGTGAAAGTGTAT
66 CTAATGGCCGATGTGATGAATGTGAAAGTG--T
69762145 ATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAA
1 ATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAA
69762187 TGTAACACCC
Statistics
Matches: 319, Mismatches: 9, Indels: 4
0.96 0.03 0.01
Matches are distributed among these distances:
94 44 0.14
96 275 0.86
ACGTcount: A:0.34, C:0.08, G:0.28, T:0.29
Consensus pattern (96 bp):
ATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGC
CTAATGGCCGATGTGATGAATGTGAAAGTGT
Found at i:69763567 original size:27 final size:27
Alignment explanation
Indices: 69763537--69763687 Score: 178
Period size: 27 Copynumber: 5.6 Consensus size: 27
69763527 ATATTGAGTC
* * *
69763537 CGCACACTCAGTGCTATATAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
69763564 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
69763592 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
69763619 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
69763646 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
69763673 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
69763688 GTACAATTTA
Statistics
Matches: 106, Mismatches: 15, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
27 82 0.77
28 24 0.23
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:69763649 original size:82 final size:81
Alignment explanation
Indices: 69763537--69763686 Score: 230
Period size: 82 Copynumber: 1.8 Consensus size: 81
69763527 ATATTGAGTC
*
69763537 CGCACACTCAGTGCTATATAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCACACTTA
1 CGCACACTCAGTGCTATATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCACACTTA
69763602 GTGCCGCATGGTCAATT
65 GTGCCGCATGGTCAATT
* * **
69763619 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCACACTTA
1 CGCACACTCAGTGCTAT-ATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCACACTTA
69763683 GTGC
65 GTGC
69763687 TGTACAATTT
Statistics
Matches: 62, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
81 17 0.27
82 45 0.73
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
CGCACACTCAGTGCTATATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCACACTTAG
TGCCGCATGGTCAATT
Found at i:69765403 original size:47 final size:47
Alignment explanation
Indices: 69765330--69765543 Score: 329
Period size: 47 Copynumber: 4.5 Consensus size: 47
69765320 GGCTGTCACA
69765330 GTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
*
69765379 GTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
*
69765426 GTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
* * * * * *
69765473 GTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAATGTGATGGAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
*
69765520 GTGAAAGTGTATAAATGTGATAAG
1 GTGAAAGTGTATATATGTGATAAG
69765544 TCCCGAAGGG
Statistics
Matches: 152, Mismatches: 13, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
47 143 0.94
49 9 0.06
ACGTcount: A:0.32, C:0.08, G:0.31, T:0.29
Consensus pattern (47 bp):
GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
Found at i:69770438 original size:47 final size:45
Alignment explanation
Indices: 69770328--69770448 Score: 122
Period size: 47 Copynumber: 2.6 Consensus size: 45
69770318 TCATTTGTGC
*
69770328 GCTAGTGTAAGACATGTCTGGGATAT-GCATCGGCCACATTATGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGGCATCGG-C-CATTATGAGA
* *
69770374 GCCAGTGAAAGACCATGTCTGGGACATGGCATCGG-CATTGA-GACAAGA
1 GCTAGTGTAAGA-CATGTCTGGGACATGGCATCGGCCATT-ATG---AGA
*
69770422 GCTAGTGTAAGACATGTATGGGACATG
1 GCTAGTGTAAGACATGTCTGGGACATG
69770449 CATTGACCTC
Statistics
Matches: 63, Mismatches: 6, Indels: 11
0.79 0.08 0.14
Matches are distributed among these distances:
45 5 0.08
46 11 0.17
47 27 0.43
48 20 0.32
ACGTcount: A:0.30, C:0.17, G:0.31, T:0.22
Consensus pattern (45 bp):
GCTAGTGTAAGACATGTCTGGGACATGGCATCGGCCATTATGAGA
Found at i:69774798 original size:12 final size:12
Alignment explanation
Indices: 69774781--69774812 Score: 64
Period size: 12 Copynumber: 2.7 Consensus size: 12
69774771 TAGACACACG
69774781 CCCGTGTGTCTA
1 CCCGTGTGTCTA
69774793 CCCGTGTGTCTA
1 CCCGTGTGTCTA
69774805 CCCGTGTG
1 CCCGTGTG
69774813 ACAAAAATAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.06, C:0.34, G:0.28, T:0.31
Consensus pattern (12 bp):
CCCGTGTGTCTA
Found at i:69777159 original size:29 final size:29
Alignment explanation
Indices: 69777105--69777187 Score: 123
Period size: 29 Copynumber: 2.9 Consensus size: 29
69777095 CTTGTTATGG
*
69777105 CCCATTAGGTCC-AATCACATTTATATAA
1 CCCATTAGGCCCAAATCACATTTATATAA
* **
69777133 CCCATTAGGCCCAAATCATATTTATATGG
1 CCCATTAGGCCCAAATCACATTTATATAA
69777162 CCCATTAGGCCCAAATCACATTTATA
1 CCCATTAGGCCCAAATCACATTTATA
69777188 GTCATGCTCA
Statistics
Matches: 49, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
28 11 0.22
29 38 0.78
ACGTcount: A:0.34, C:0.27, G:0.10, T:0.30
Consensus pattern (29 bp):
CCCATTAGGCCCAAATCACATTTATATAA
Found at i:69779859 original size:54 final size:54
Alignment explanation
Indices: 69779800--69779908 Score: 209
Period size: 54 Copynumber: 2.0 Consensus size: 54
69779790 CATAACACTA
69779800 AAGACATTGGCACATATATATATAAATGGGCCTACAACCATTTTAGCCAAAATG
1 AAGACATTGGCACATATATATATAAATGGGCCTACAACCATTTTAGCCAAAATG
*
69779854 AAGACATTGGCACATATATATATAAATGGGCTTACAACCATTTTAGCCAAAATG
1 AAGACATTGGCACATATATATATAAATGGGCCTACAACCATTTTAGCCAAAATG
69779908 A
1 A
69779909 GCCAATTACA
Statistics
Matches: 54, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
54 54 1.00
ACGTcount: A:0.41, C:0.17, G:0.15, T:0.27
Consensus pattern (54 bp):
AAGACATTGGCACATATATATATAAATGGGCCTACAACCATTTTAGCCAAAATG
Found at i:69781738 original size:8 final size:8
Alignment explanation
Indices: 69781727--69781757 Score: 53
Period size: 8 Copynumber: 3.9 Consensus size: 8
69781717 TATCCAAATA
69781727 TCATACAT
1 TCATACAT
69781735 TCATACAT
1 TCATACAT
*
69781743 TTATACAT
1 TCATACAT
69781751 TCATACA
1 TCATACA
69781758 CAAATATCAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.39, C:0.23, G:0.00, T:0.39
Consensus pattern (8 bp):
TCATACAT
Found at i:69783187 original size:23 final size:25
Alignment explanation
Indices: 69783132--69783188 Score: 64
Period size: 25 Copynumber: 2.3 Consensus size: 25
69783122 GAGCCATGAT
* *
69783132 CAGTAAGCTCCTCTTGAGCTGATGGA
1 CAGTAAGCTCCTATTGAGCTGA-GAA
*
69783158 CAATAAGCT-CTATTGAGCTGA-AA
1 CAGTAAGCTCCTATTGAGCTGAGAA
69783181 CAGTAAGC
1 CAGTAAGC
69783189 ATTGACAAGC
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
23 8 0.30
25 11 0.41
26 8 0.30
ACGTcount: A:0.32, C:0.21, G:0.23, T:0.25
Consensus pattern (25 bp):
CAGTAAGCTCCTATTGAGCTGAGAA
Found at i:69788671 original size:30 final size:30
Alignment explanation
Indices: 69788614--69788671 Score: 98
Period size: 30 Copynumber: 1.9 Consensus size: 30
69788604 TTTTCGAGCA
**
69788614 TAGGGGCAAAATGGTCATTTTGTCAAAGTC
1 TAGGGGCAAAATGGTCATTTTACCAAAGTC
69788644 TAGGGGCAAAATGGTCATTTTACCAAAG
1 TAGGGGCAAAATGGTCATTTTACCAAAG
69788672 ATGTGAATTT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.33, C:0.14, G:0.26, T:0.28
Consensus pattern (30 bp):
TAGGGGCAAAATGGTCATTTTACCAAAGTC
Found at i:69789170 original size:47 final size:46
Alignment explanation
Indices: 69789013--69789367 Score: 215
Period size: 47 Copynumber: 7.6 Consensus size: 46
69789003 TGGTTTGTGC
* * * * *
69789013 GCCAGTGTAAGACATGTCTGGGACATGCCTCGGCCACATTATGAGA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCAGCCATACTATGATA
* * * ** * * * **
69789059 GCCGGTGTAAGGCCATGTTTGGGACATGGCATCA-ATATCCAGACGAGG
1 GCCAGTGTAA-GACATGTCTGGGACAT-GCATCAGCCATAC-TATGATA
* *
69789107 GCTAGTGTAAGACATGTTTGGGACATGCATCAGCCATACTATGATA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCAGCCATACTATGATA
* * *
69789153 GCCAGTGTAAGACCATGTCTAGGACATGGCATCAGCACAGA-GATGACT-
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCAGC-CATACTATGA-TA
* * * *
69789201 GCCAGTGTAAGACATATCTCGGACATGCATCGGCC-TCGACCGA-GATA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCAGCCAT--A-CTATGATA
* * * * * *
69789248 GCCAGTGTAAGACGTGTCTGGGACACGTATCAGCTAAGAGT-TG-T-
1 GCCAGTGTAAGACATGTCTGGGACATGCATCAGC-CATACTATGATA
* * *
69789292 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCACGCGTA-TATGAGA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCAG--C-CATACTATGATA
69789340 GCCAGTGTAAGACCATGTCTGGGACATG
1 GCCAGTGTAAGA-CATGTCTGGGACATG
69789368 GCATTCGCAA
Statistics
Matches: 235, Mismatches: 52, Indels: 41
0.72 0.16 0.12
Matches are distributed among these distances:
44 29 0.12
45 3 0.01
46 43 0.18
47 88 0.37
48 53 0.23
49 19 0.08
ACGTcount: A:0.28, C:0.21, G:0.29, T:0.22
Consensus pattern (46 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCAGCCATACTATGATA
Found at i:69789178 original size:94 final size:91
Alignment explanation
Indices: 69789016--69789371 Score: 319
Period size: 94 Copynumber: 3.8 Consensus size: 91
69789006 TTTGTGCGCC
* * * * * * *
69789016 AGTGTAAGACATGTCTGGGACATGCCTCGGCCACATTATGAGAGCCGGTGTAAGGCCATGTTTGG
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCATACTATGAGAGCCAGTGTAAGACCATGTCTGG
*
69789081 GACATGGCATCAATATCCAGACGAGGGCT
66 GACATGGCATCAATA--CAGA-GAGTGCT
* * *
69789110 AGTGTAAGACATGTTTGGGACATGCATCAGCCATACTATGATAGCCAGTGTAAGACCATGTCTAG
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCATACTATGAGAGCCAGTGTAAGACCATGTCTGG
** *
69789175 GACATGGCATCAGCACAGAGATGACTGCC
66 GACATGGCATCAATACAGAGA-G--TGCT
* * * * * *
69789204 AGTGTAAGACATATCTCGGACATGCATCGGCC-TCGACCGA-GATAGCCAGTGTAAGA-CGTGTC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCAT--A-CTATGAGAGCCAGTGTAAGACCATGTC
* * * *
69789266 TGGGACA-CGTATCAGCTA-AGAGTTGTGCT
63 TGGGACATGGCATCA-ATACAGAG-AGTGCT
*
69789295 AGTGTAAGACATGTCTGGGACATGCATCAGCACGCGTA-TATGAGAGCCAGTGTAAGACCATGTC
1 AGTGTAAGACATGTCTGGGACATGCATCAG--C-CATACTATGAGAGCCAGTGTAAGACCATGTC
69789359 TGGGACATGGCAT
63 TGGGACATGGCAT
69789372 TCGCAATATA
Statistics
Matches: 212, Mismatches: 35, Indels: 30
0.77 0.13 0.11
Matches are distributed among these distances:
91 33 0.16
92 20 0.09
93 25 0.12
94 114 0.54
95 18 0.08
96 2 0.01
ACGTcount: A:0.28, C:0.21, G:0.29, T:0.22
Consensus pattern (91 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGCCATACTATGAGAGCCAGTGTAAGACCATGTCTGG
GACATGGCATCAATACAGAGAGTGCT
Found at i:69795590 original size:32 final size:32
Alignment explanation
Indices: 69795547--69795618 Score: 110
Period size: 32 Copynumber: 2.2 Consensus size: 32
69795537 ATATTTACCC
*
69795547 ATGGCTGTGTGTTGATCATATTA-CAGCTACTG
1 ATGGCTGTGTGTTGATCAAATTACCA-CTACTG
*
69795579 ATGGCTTTGTGTTGATCAAATTACCACTACTG
1 ATGGCTGTGTGTTGATCAAATTACCACTACTG
69795611 ATGGCTGT
1 ATGGCTGT
69795619 AAGCCATGTA
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
32 34 0.94
33 2 0.06
ACGTcount: A:0.22, C:0.17, G:0.24, T:0.38
Consensus pattern (32 bp):
ATGGCTGTGTGTTGATCAAATTACCACTACTG
Done.