Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100714657
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 3970000 characters in sequence are not A, C, G, or T
File 220 of 318
Found at i:69798761 original size:27 final size:27
Alignment explanation
Indices: 69798702--69798926 Score: 215
Period size: 27 Copynumber: 8.4 Consensus size: 27
69798692 GACCCCGATT
* *
69798702 TGTAAAATTATCAAAATACCCCTAGT-T
1 TGTAAAATTACCAAAATACCCCT-GTAG
* *
69798729 TATAAAATTACCAAAATACTCCTGTAG
1 TGTAAAATTACCAAAATACCCCTGTAG
** * *
69798756 TGTAAAATTACTGAAATACCCTTGTCG
1 TGTAAAATTACCAAAATACCCCTGTAG
*
69798783 TGTAAAATTACCAAAATACCCCTGTGG
1 TGTAAAATTACCAAAATACCCCTGTAG
* *
69798810 TGTAAAATTA-CAGAAATACCACTATAG
1 TGTAAAATTACCA-AAATACCCCTGTAG
*** *
69798837 TGTAAAATTATTGAAATACCCCTATAG
1 TGTAAAATTACCAAAATACCCCTGTAG
* **
69798864 TGTAAAAGTACTGAAATACCCCTGTAG
1 TGTAAAATTACCAAAATACCCCTGTAG
* *
69798891 TGTAAAATTA-CAGAAAT-GCCCTATAG
1 TGTAAAATTACCA-AAATACCCCTGTAG
69798917 TGTAAAATTA
1 TGTAAAATTA
69798927 TTGAAATACC
Statistics
Matches: 166, Mismatches: 28, Indels: 9
0.82 0.14 0.04
Matches are distributed among these distances:
26 21 0.13
27 145 0.87
ACGTcount: A:0.41, C:0.17, G:0.12, T:0.30
Consensus pattern (27 bp):
TGTAAAATTACCAAAATACCCCTGTAG
Found at i:69798789 original size:54 final size:53
Alignment explanation
Indices: 69798731--69798940 Score: 246
Period size: 54 Copynumber: 3.9 Consensus size: 53
69798721 CCCTAGTTTA
* * *
69798731 TAAAATTACCAAAATACTCCTGTAGTGTAAAATTACTGAAATACCCTTGTCGTG
1 TAAAATTACCAAAATACCCCTATAGTGTAAAATTACTGAAATACCC-TGTAGTG
* * * *
69798785 TAAAATTACCAAAATACCCCTGTGGTGTAAAATTACAGAAATACCACTATAGTG
1 TAAAATTACCAAAATACCCCTATAGTGTAAAATTACTGAAATACC-CTGTAGTG
*** *
69798839 TAAAATTATTGAAATACCCCTATAGTGTAAAAGTACTGAAATACCCCTGTAGTG
1 TAAAATTACCAAAATACCCCTATAGTGTAAAATTACTGAAATA-CCCTGTAGTG
* *
69798893 TAAAATTA-CAGAAAT-GCCCTATAGTGTAAAATTATTGAAATA-CCTGTA
1 TAAAATTACCA-AAATACCCCTATAGTGTAAAATTACTGAAATACCCTGTA
69798941 ACACCCCGTA
Statistics
Matches: 135, Mismatches: 18, Indels: 9
0.83 0.11 0.06
Matches are distributed among these distances:
51 6 0.04
53 24 0.18
54 102 0.76
55 3 0.02
ACGTcount: A:0.40, C:0.17, G:0.13, T:0.30
Consensus pattern (53 bp):
TAAAATTACCAAAATACCCCTATAGTGTAAAATTACTGAAATACCCTGTAGTG
Found at i:69798838 original size:81 final size:79
Alignment explanation
Indices: 69798702--69798936 Score: 301
Period size: 81 Copynumber: 2.9 Consensus size: 79
69798692 GACCCCGATT
* * * *
69798702 TGTAAAATTATCAAAATACCCCTAGTTTATAAAATTACCA-AAATACTCCTGTAGTGTAAAATTA
1 TGTAAAATTACCAAAATACCCCT-GTGTGTAAAATTA-CAGAAATAC-CCTATAGTGTAAAATTA
* * * *
69798766 CTGAAATACCCTTGTCG
63 TTGAAATACCCCTATAG
69798783 TGTAAAATTACCAAAATACCCCTGTGGTGTAAAATTACAGAAATACCACTATAGTGTAAAATTAT
1 TGTAAAATTACCAAAATACCCCTGT-GTGTAAAATTACAGAAATACC-CTATAGTGTAAAATTAT
69798848 TGAAATACCCCTATAG
64 TGAAATACCCCTATAG
* ** *
69798864 TGTAAAAGTACTGAAATACCCCTGTAGTGTAAAATTACAGAAATGCCCTATAGTGTAAAATTATT
1 TGTAAAATTACCAAAATACCCCTGT-GTGTAAAATTACAGAAATACCCTATAGTGTAAAATTATT
69798929 GAAATACC
65 GAAATACC
69798937 TGTAACACCC
Statistics
Matches: 138, Mismatches: 13, Indels: 7
0.87 0.08 0.04
Matches are distributed among these distances:
80 31 0.22
81 107 0.78
ACGTcount: A:0.41, C:0.17, G:0.12, T:0.30
Consensus pattern (79 bp):
TGTAAAATTACCAAAATACCCCTGTGTGTAAAATTACAGAAATACCCTATAGTGTAAAATTATTG
AAATACCCCTATAG
Found at i:69800844 original size:22 final size:22
Alignment explanation
Indices: 69800816--69800890 Score: 62
Period size: 22 Copynumber: 3.3 Consensus size: 22
69800806 TTCCACATCC
69800816 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
** * * *
69800838 ATCACATATATACACTTTC-ACATT
1 ATCACAT-T-GGC-CATTCGGCCTT
69800862 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
69800885 ATCACA
1 ATCACA
69800891 CATACACATG
Statistics
Matches: 38, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 17 0.45
23 5 0.13
24 5 0.13
25 11 0.29
ACGTcount: A:0.27, C:0.31, G:0.11, T:0.32
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:69800851 original size:47 final size:47
Alignment explanation
Indices: 69800788--69801044 Score: 365
Period size: 47 Copynumber: 5.4 Consensus size: 47
69800778 CCCTTCGGGA
* * *
69800788 CTTATCACATTTATACACTTCCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
69800835 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
69800882 CTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
69800929 CTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
69800976 CTTATCACGCATATATATACTTTCACATTCATCACATTGGCCACTCGGC
1 CTTATCA--CATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
69801025 CCTATCACATATATATACTT
1 CTTATCACATATATACACTT
69801045 GTACATCAAT
Statistics
Matches: 196, Mismatches: 10, Indels: 8
0.92 0.05 0.04
Matches are distributed among these distances:
46 1 0.01
47 154 0.79
49 40 0.20
50 1 0.01
ACGTcount: A:0.28, C:0.31, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:69806020 original size:40 final size:40
Alignment explanation
Indices: 69805958--69806278 Score: 475
Period size: 40 Copynumber: 8.1 Consensus size: 40
69805948 CGAATACACG
* * * *
69805958 TCACTAGCATGATTGCTCTTCGGGACCTAGCCCGGATATA
1 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACA
* * ** ** *
69805998 ACACCAGCACGAATGCAT-TTCGGGGTTTAGCATGGATATA
1 TCACTAGCACGAATGC-TCTTCGGGACTTAGCCCGGATACA
* *
69806038 TCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACA
1 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACA
*
69806078 TCACTAGCACGAATGCTCTTCGAGACTTAGCCCGGATACA
1 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACA
69806118 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACA
*
69806158 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACA
*
69806198 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACA
69806238 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGAT-CA
1 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACA
69806277 TC
1 TC
69806279 GTCGAGACCT
Statistics
Matches: 255, Mismatches: 24, Indels: 5
0.90 0.08 0.02
Matches are distributed among these distances:
39 5 0.02
40 249 0.98
41 1 0.00
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACA
Found at i:69806406 original size:38 final size:38
Alignment explanation
Indices: 69806332--69806406 Score: 98
Period size: 38 Copynumber: 2.0 Consensus size: 38
69806322 GAATTTTAAT
* *
69806332 CCGGACATAATCTCTGTACATAGCCATCGGGTCTTTAC
1 CCGGACATAATCTCTGTACATAGCCAGCGGGCCTTTAC
* *
69806370 CCGGACATAATCTCT-TCATATAGTCAGCGGGCCTTTA
1 CCGGACATAATCTCTGT-ACATAGCCAGCGGGCCTTTA
69806407 AACTCGGATT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
37 1 0.03
38 31 0.97
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.29
Consensus pattern (38 bp):
CCGGACATAATCTCTGTACATAGCCAGCGGGCCTTTAC
Found at i:69808899 original size:47 final size:47
Alignment explanation
Indices: 69808836--69809139 Score: 459
Period size: 47 Copynumber: 6.4 Consensus size: 47
69808826 CCCTTCGGGA
* * *
69808836 CTTATCACATTTATACACTTCCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
69808883 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
69808930 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
69808977 CTTATCTCATATATGCA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
69809024 CTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
69809071 CTTATCACGCATATATATACTTTCACATTCATCACATTGGCCACTCGGC
1 CTTATCA--CATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
69809120 CCTATCACATATATATACTT
1 CTTATCACATATATACACTT
69809140 GTACATCAAT
Statistics
Matches: 239, Mismatches: 14, Indels: 8
0.92 0.05 0.03
Matches are distributed among these distances:
46 1 0.00
47 197 0.82
49 40 0.17
50 1 0.00
ACGTcount: A:0.27, C:0.30, G:0.09, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:69811592 original size:27 final size:27
Alignment explanation
Indices: 69811482--69811592 Score: 150
Period size: 27 Copynumber: 4.1 Consensus size: 27
69811472 GGGGCGTCAC
* *
69811482 AATACCCCTATAGTGTAAAAGTACTGA
1 AATACCCCTATAGTGTAAAATTACCGA
*
69811509 AATACCCCTGTAGTGTAAAATTACCGA
1 AATACCCCTATAGTGTAAAATTACCGA
* * * *
69811536 AATAGCCCTGTAATGTAAAATTATCGA
1 AATACCCCTATAGTGTAAAATTACCGA
*
69811563 AATACCCCTATAGTGTAAAATTACCAA
1 AATACCCCTATAGTGTAAAATTACCGA
69811590 AAT
1 AAT
69811593 TCCCTTGTAG
Statistics
Matches: 73, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 73 1.00
ACGTcount: A:0.41, C:0.19, G:0.13, T:0.27
Consensus pattern (27 bp):
AATACCCCTATAGTGTAAAATTACCGA
Found at i:69811610 original size:54 final size:54
Alignment explanation
Indices: 69811507--69811610 Score: 138
Period size: 54 Copynumber: 1.9 Consensus size: 54
69811497 TAAAAGTACT
* * * *
69811507 GAAATACCCCTGTAGTGTAAAATTACCGAAATAGCCCTGTAATGTAAAATTATC
1 GAAATACCCCTATAGTGTAAAATTACCAAAATAGCCCTGTAAGGCAAAATTATC
* *
69811561 GAAATACCCCTATAGTGTAAAATTACCAAAAT-TCCCTTGTAGGGCAAAAT
1 GAAATACCCCTATAGTGTAAAATTACCAAAATAGCCC-TGTAAGGCAAAAT
69811611 GACTATTTTA
Statistics
Matches: 43, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
53 3 0.07
54 40 0.93
ACGTcount: A:0.39, C:0.19, G:0.14, T:0.27
Consensus pattern (54 bp):
GAAATACCCCTATAGTGTAAAATTACCAAAATAGCCCTGTAAGGCAAAATTATC
Found at i:69812106 original size:27 final size:27
Alignment explanation
Indices: 69812019--69812108 Score: 72
Period size: 27 Copynumber: 3.3 Consensus size: 27
69812009 GCTTTCTACT
* * *
69812019 AATCGTATTTACCTATGGCTATATGCC
1 AATCATATTTACCCATGGCTATGTGCC
* *** * *
69812046 TATCATATTTATTGATGGCTCTGTGTC
1 AATCATATTTACCCATGGCTATGTGCC
* * *
69812073 GACCATATTTACCCATGGCTGTGTGCC
1 AATCATATTTACCCATGGCTATGTGCC
69812100 AATCATATT
1 AATCATATT
69812109 ACAGCTACTG
Statistics
Matches: 46, Mismatches: 17, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
27 46 1.00
ACGTcount: A:0.23, C:0.21, G:0.17, T:0.39
Consensus pattern (27 bp):
AATCATATTTACCCATGGCTATGTGCC
Found at i:69812142 original size:32 final size:32
Alignment explanation
Indices: 69812094--69812154 Score: 95
Period size: 32 Copynumber: 1.9 Consensus size: 32
69812084 CCCATGGCTG
*
69812094 TGTGCCAATCATATTACAGCTACTGATGGATT
1 TGTGCCAATCAAATTACAGCTACTGATGGATT
* *
69812126 TGTGCCGATCAAATTACCGCTACTGATGG
1 TGTGCCAATCAAATTACAGCTACTGATGG
69812155 CTATAAGCCG
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
32 26 1.00
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.31
Consensus pattern (32 bp):
TGTGCCAATCAAATTACAGCTACTGATGGATT
Found at i:69813095 original size:43 final size:43
Alignment explanation
Indices: 69813047--69813155 Score: 132
Period size: 43 Copynumber: 2.5 Consensus size: 43
69813037 AATTACCGAG
* **
69813047 ATGTGATTACGTGTAAGACCAT-GTCTAGGAC-ATTGGCATCGTT
1 ATGTGATTACATGTAAGACCATAG-CTAGG-CTATTGGCATCAAT
* *
69813090 ATGTGATTTCATGTAAGACAATAGCTAGGCTATTGGCATCAAT
1 ATGTGATTACATGTAAGACCATAGCTAGGCTATTGGCATCAAT
*
69813133 ATGTGATAACATGTAAGACCATA
1 ATGTGATTACATGTAAGACCATA
69813156 TCTCAGATAA
Statistics
Matches: 56, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
42 1 0.02
43 54 0.96
44 1 0.02
ACGTcount: A:0.32, C:0.15, G:0.22, T:0.31
Consensus pattern (43 bp):
ATGTGATTACATGTAAGACCATAGCTAGGCTATTGGCATCAAT
Found at i:69816836 original size:5 final size:5
Alignment explanation
Indices: 69816826--69816852 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
69816816 GATACCAACC
69816826 ATAAA ATAAA ATAAA ATAAA ATAAA AT
1 ATAAA ATAAA ATAAA ATAAA ATAAA AT
69816853 TTTATTTTTG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (5 bp):
ATAAA
Found at i:69825491 original size:37 final size:37
Alignment explanation
Indices: 69825448--69825526 Score: 106
Period size: 37 Copynumber: 2.1 Consensus size: 37
69825438 TTATTACGAA
* * * *
69825448 GTCTTACCCGGATATAATCTCCACACGA-AGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACAC-ATAGTCATCGG
69825485 GTCTTACCCGGACAAAATCCCCACACATAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACATAGTCATCGG
69825522 GTCTT
1 GTCTT
69825527 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
36 1 0.03
37 36 0.97
ACGTcount: A:0.27, C:0.30, G:0.18, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACATAGTCATCGG
Found at i:69825755 original size:47 final size:47
Alignment explanation
Indices: 69825644--69826057 Score: 738
Period size: 47 Copynumber: 8.7 Consensus size: 47
69825634 GCCCTTCGGG
*
69825644 ACTTATCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC
1 ACTT-TCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
*
69825694 ACTTTCACATTCATCACTTCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
69825741 ACTTTCACATTCATCGCATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
69825788 ACTTTCACATTCATCACATCGGCCATTAGGCGTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
69825835 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
* *
69825882 ACTTTCACATTCATCACATCGGCCATTAGGCATTATCACATATATAA
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
69825929 ACTTTCACATTCATCACATCGGCCATTAGGCATTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
69825976 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
69826023 ACTTTCACATTCATCACATCGGCCATTAGGCCTTA
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTA
69826058 CTATCATTTC
Statistics
Matches: 353, Mismatches: 11, Indels: 3
0.96 0.03 0.01
Matches are distributed among these distances:
47 316 0.90
49 33 0.09
50 4 0.01
ACGTcount: A:0.30, C:0.29, G:0.09, T:0.32
Consensus pattern (47 bp):
ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
Found at i:69829578 original size:40 final size:40
Alignment explanation
Indices: 69829508--69829664 Score: 233
Period size: 40 Copynumber: 3.9 Consensus size: 40
69829498 CGAATACACG
* * * * *
69829508 TCACCAGCATGATTGCTCTTCGGGATTTAGCACGGATATA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
* **
69829548 TCACTAGCACGAATGCTCTTCGAAACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
69829588 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
*
69829628 TCGCTAGCATGAATGCTCTTCGGGACTTAGCCCGGAT
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGAT
69829665 TTAGTAACTC
Statistics
Matches: 105, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 105 1.00
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
Found at i:69829689 original size:40 final size:40
Alignment explanation
Indices: 69829521--69829743 Score: 215
Period size: 40 Copynumber: 5.6 Consensus size: 40
69829511 CCAGCATGAT
* *
69829521 TGCTCTTCGGGATTTAGCACGGATATA-TCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATAGTCACTAGCAC-AA
** * *
69829561 TGCTCTTCGAAACTTAGCCCGGATACA-TCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATATAGTCACTAGCA-CAA
* * *
69829601 TGCTCTTCGGGACTTAGCCCGGATACA-TCGCTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATATAGTCACTAGCA-CAA
* * *
69829641 TGCTCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACCAA
1 TGCTCTTCGGGACTTAGCCCGGATATAGTCACTAGCA-CAA
* *
69829682 TGC-CTTC-GGATCTTAGTCCGGATATGGTCACTTAGCACAA
1 TGCTCTTCGGGA-CTTAGCCCGGATATAGTCAC-TAGCACAA
*
69829722 AGC-CTTCGGGACTTAGCCCGGA
1 TGCTCTTCGGGACTTAGCCCGGA
69829744 CATCATTCGA
Statistics
Matches: 155, Mismatches: 23, Indels: 10
0.82 0.12 0.05
Matches are distributed among these distances:
39 3 0.02
40 134 0.86
41 18 0.12
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAA
Found at i:69829729 original size:120 final size:120
Alignment explanation
Indices: 69829513--69829743 Score: 288
Period size: 120 Copynumber: 1.9 Consensus size: 120
69829503 ACACGTCACC
* * * *
69829513 AGCATGATTGCTCTTCGGGATTTAGCACGGATATATCACTAGCACGAATGCTCTTCGAAACTTAG
1 AGCATGAATGCTCTTCGGGACTTAGCACGGATATATAACTAGCACCAATGCTCTTCGAAACTTAG
* *
69829578 CCCGGATACATCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACATCGCT
66 CCCGGATACATCACTAGCATCAAAGCTCTTCGGGACTTAGCCCGGATACATCGCT
* * * * *
69829633 AGCATGAATGCTCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACCAATGC-CTTCGGATCTTA
1 AGCATGAATGCTCTTCGGGACTTAGCACGGATATA-TAACTAGCACCAATGCTCTTCGAAACTTA
* **
69829697 GTCCGGATATGGTCACTTAGCA-CAAAGC-CTTCGGGACTTAGCCCGGA
65 GCCCGGATA-CATCAC-TAGCATCAAAGCTCTTCGGGACTTAGCCCGGA
69829744 CATCATTCGA
Statistics
Matches: 94, Mismatches: 14, Indels: 6
0.82 0.12 0.05
Matches are distributed among these distances:
120 68 0.72
121 21 0.22
122 5 0.05
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (120 bp):
AGCATGAATGCTCTTCGGGACTTAGCACGGATATATAACTAGCACCAATGCTCTTCGAAACTTAG
CCCGGATACATCACTAGCATCAAAGCTCTTCGGGACTTAGCCCGGATACATCGCT
Found at i:69830090 original size:29 final size:29
Alignment explanation
Indices: 69830051--69830129 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
69830041 CTTAATAATC
*
69830051 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
69830081 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
69830110 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
69830130 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:69830172 original size:43 final size:43
Alignment explanation
Indices: 69830111--69830213 Score: 206
Period size: 43 Copynumber: 2.4 Consensus size: 43
69830101 TGCATTTCAA
69830111 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
69830154 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
69830197 GCCCGCACACTTAGTGC
1 GCCCGCACACTTAGTGC
69830214 TGAAAACCAA
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 60 1.00
ACGTcount: A:0.26, C:0.36, G:0.16, T:0.22
Consensus pattern (43 bp):
GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
Found at i:69832116 original size:37 final size:37
Alignment explanation
Indices: 69832066--69832144 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
69832056 TTATTACGAA
* * *
69832066 GTCTTACCCGGACATAATCTCCACACGA-AGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACAC-ATAGTCATCGG
69832103 GTCTTACCCGGACAAAATCCCCACACATAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACATAGTCATCGG
69832140 GTCTT
1 GTCTT
69832145 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
36 1 0.03
37 37 0.97
ACGTcount: A:0.27, C:0.32, G:0.18, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACATAGTCATCGG
Found at i:69832373 original size:47 final size:48
Alignment explanation
Indices: 69832262--69832393 Score: 230
Period size: 47 Copynumber: 2.7 Consensus size: 48
69832252 GCCCTTCGGG
*
69832262 ACTTATCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC
1 ACTT-TCACATTCATCACATCGGCCATTAGGCCTTATCACA-ATATATAC
69832312 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC-ATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAATATATAC
69832359 ACTTTCACATTCATCACATCGGCCATTAGGCCTTA
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTA
69832394 CTATCATTTC
Statistics
Matches: 81, Mismatches: 1, Indels: 3
0.95 0.01 0.04
Matches are distributed among these distances:
47 43 0.53
49 34 0.42
50 4 0.05
ACGTcount: A:0.30, C:0.30, G:0.09, T:0.31
Consensus pattern (48 bp):
ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAATATATAC
Found at i:69836435 original size:27 final size:27
Alignment explanation
Indices: 69836405--69836582 Score: 214
Period size: 27 Copynumber: 6.6 Consensus size: 27
69836395 ATATCGAGTC
* * * *
69836405 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
*
69836432 CGCACACTTAGTGCTACATAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
69836459 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
69836487 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
69836514 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
69836541 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
69836568 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
69836583 GTACAATTTA
Statistics
Matches: 132, Mismatches: 16, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
27 108 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:69836544 original size:82 final size:81
Alignment explanation
Indices: 69836426--69836581 Score: 242
Period size: 82 Copynumber: 1.9 Consensus size: 81
69836416 TGCTATATAA
*
69836426 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
69836491 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
69836508 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
69836572 CACTTAGTGC
65 CACTTAGTGC
69836582 TGTACAATTT
Statistics
Matches: 68, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
81 16 0.24
82 52 0.76
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:69841762 original size:23 final size:23
Alignment explanation
Indices: 69841710--69841756 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
69841700 TCAATCAATG
69841710 AGATAACATAAAATTTAACTACA
1 AGATAACATAAAATTTAACTACA
69841733 AGATAACATAAAATTTAACTACA
1 AGATAACATAAAATTTAACTACA
69841756 A
1 A
69841757 AGTAACTCAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.57, C:0.13, G:0.04, T:0.26
Consensus pattern (23 bp):
AGATAACATAAAATTTAACTACA
Found at i:69844832 original size:15 final size:14
Alignment explanation
Indices: 69844812--69844841 Score: 51
Period size: 15 Copynumber: 2.1 Consensus size: 14
69844802 CATCACTCAA
69844812 TTCATTCTTCCATCT
1 TTCATTCTT-CATCT
69844827 TTCATTCTTCATCT
1 TTCATTCTTCATCT
69844841 T
1 T
69844842 CTATTTGTTC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.40
15 9 0.60
ACGTcount: A:0.13, C:0.30, G:0.00, T:0.57
Consensus pattern (14 bp):
TTCATTCTTCATCT
Found at i:69850178 original size:26 final size:27
Alignment explanation
Indices: 69850120--69850172 Score: 99
Period size: 26 Copynumber: 2.0 Consensus size: 27
69850110 AGGGGCATTT
69850120 CAGTCATTTTACCACATAAGGGCAAAA
1 CAGTCATTTTACCACATAAGGGCAAAA
69850147 CAGTCATTTTA-CACATAAGGGCAAAA
1 CAGTCATTTTACCACATAAGGGCAAAA
69850173 AGGTCAATTC
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
26 15 0.58
27 11 0.42
ACGTcount: A:0.42, C:0.21, G:0.15, T:0.23
Consensus pattern (27 bp):
CAGTCATTTTACCACATAAGGGCAAAA
Found at i:69854032 original size:13 final size:13
Alignment explanation
Indices: 69854014--69854038 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
69854004 TCCACACGTC
69854014 CGTGTGATTAACT
1 CGTGTGATTAACT
69854027 CGTGTGATTAAC
1 CGTGTGATTAAC
69854039 ACGTCATGTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.16, G:0.24, T:0.36
Consensus pattern (13 bp):
CGTGTGATTAACT
Found at i:69855923 original size:46 final size:45
Alignment explanation
Indices: 69855856--69856030 Score: 154
Period size: 46 Copynumber: 3.8 Consensus size: 45
69855846 TGTAACCCGC
* * *
69855856 CCATAAGTTAACTCGGGCTCAACGCAACGAGCTCGGGCGTTCGTAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGC-TTCGTAT
* * *
69855902 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCTGATGCCTAGT-T
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTC-G-GGCTTCGTAT
* *** * * * **
69855948 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCAGACATTCACAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGGC-TTCGTAT
*
69855995 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
69856031 ATACCCAAAT
Statistics
Matches: 101, Mismatches: 23, Indels: 10
0.75 0.17 0.07
Matches are distributed among these distances:
45 1 0.01
46 64 0.63
47 34 0.34
48 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCTTCGTAT
Found at i:69856050 original size:46 final size:45
Alignment explanation
Indices: 69855907--69856050 Score: 103
Period size: 46 Copynumber: 3.1 Consensus size: 45
69855897 CGTATCCATA
* * * * * *
69855907 AGTGAACTCGGACTCAACTCAACGAGCTCTGATGCCTAGTTACATCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCAGATACCCA--AATATCT
* * ** * *
69855954 -CTCGAACTCGGACTCAACTCAACGAGTTCAGACATTCACATCCAT-A
1 AGT-GAACTCGGACTCAACTCAACGAGTTCAGATACCCAAAT--ATCT
*
69856000 AGTGAACTCGGACTCAACTCAACGAGTTCGGATACCCAAATATTCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCAGATACCCAAATA-TCT
69856046 AGTGA
1 AGTGA
69856051 CATGTCACTT
Statistics
Matches: 73, Mismatches: 18, Indels: 13
0.70 0.17 0.12
Matches are distributed among these distances:
44 1 0.01
45 2 0.03
46 39 0.53
47 31 0.42
ACGTcount: A:0.31, C:0.28, G:0.17, T:0.24
Consensus pattern (45 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCAGATACCCAAATATCT
Found at i:69858457 original size:30 final size:30
Alignment explanation
Indices: 69858413--69858501 Score: 92
Period size: 30 Copynumber: 3.0 Consensus size: 30
69858403 CAAAGATAAC
69858413 AAGAAAACC-GAATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAACCCAAGATA
* * * *
69858442 GAGAAACCCAGAATAAAGAAATCC-GGAATA
1 AAGAAAACCAGAATAAAGAAACCCAAG-ATA
* * *
69858472 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAACCCAAGATA
69858502 CGATATTATG
Statistics
Matches: 47, Mismatches: 10, Indels: 5
0.76 0.16 0.08
Matches are distributed among these distances:
29 8 0.17
30 38 0.81
31 1 0.02
ACGTcount: A:0.56, C:0.17, G:0.18, T:0.09
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAACCCAAGATA
Found at i:69858461 original size:15 final size:15
Alignment explanation
Indices: 69858413--69858496 Score: 82
Period size: 15 Copynumber: 5.7 Consensus size: 15
69858403 CAAAGATAAC
*
69858413 AAGAAAACC-GAATA
1 AAGAAACCCAGAATA
69858427 AAGAAACCCA-AGATA
1 AAGAAACCCAGA-ATA
*
69858442 GAGAAACCCAGAATA
1 AAGAAACCCAGAATA
* *
69858457 AAGAAATCCGGAATA
1 AAGAAACCCAGAATA
* * *
69858472 AAGAGATCCAGGATA
1 AAGAAACCCAGAATA
69858487 AAGAAACCCA
1 AAGAAACCCA
69858497 AGATACGATA
Statistics
Matches: 57, Mismatches: 10, Indels: 5
0.79 0.14 0.07
Matches are distributed among these distances:
14 9 0.16
15 47 0.82
16 1 0.02
ACGTcount: A:0.56, C:0.18, G:0.18, T:0.08
Consensus pattern (15 bp):
AAGAAACCCAGAATA
Found at i:69861570 original size:93 final size:93
Alignment explanation
Indices: 69861438--69861609 Score: 254
Period size: 93 Copynumber: 1.8 Consensus size: 93
69861428 GCCCATAAGT
* ** * *
69861438 GAACTCAGACTCAACTCAATGAGCTCGGGCGTTCACATCCATAAGTGAACTCAGACTCAACTGAA
1 GAACTCAGACTCAACTCAACGAGCTCGAACATTCACATCCATAAGTGAACTCAGACTCAACTCAA
69861503 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
* * * *
69861531 GAACTCGGACTCAACTCAACGAGTTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGAACATTCACATCCATAAGTGAACTCAGACTCAACTCAA
*
69861596 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
69861610 CAAATATTCT
Statistics
Matches: 69, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
93 69 1.00
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGCTCGAACATTCACATCCATAAGTGAACTCAGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:69861603 original size:46 final size:43
Alignment explanation
Indices: 69861430--69861599 Score: 142
Period size: 46 Copynumber: 3.7 Consensus size: 43
69861420 TGTAACCCGC
* *
69861430 CCATAAGTGAACTCAGACTCAACTCAATGAGCTCGGGCGTTCACAT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGCTC--GCATTC-CAT
* * *
69861476 CCATAAGTGAACTCAGACTCAACTGAACGAGCTCGGATGCCTAGTT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGCATTCC-A--T
* *** * *
69861522 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGAACATTCGCAT
1 CCATAAGT-GAACTCAGACTCAACTCAACGAGCTCG--CATTC-CAT
*
69861569 CCATAAGTGAACTCGGACTCAACTCAACGAG
1 CCATAAGTGAACTCAGACTCAACTCAACGAG
69861600 TTCGGATGCC
Statistics
Matches: 99, Mismatches: 18, Indels: 14
0.76 0.14 0.11
Matches are distributed among these distances:
43 1 0.01
44 4 0.04
46 60 0.61
47 29 0.29
49 4 0.04
50 1 0.01
ACGTcount: A:0.31, C:0.29, G:0.19, T:0.21
Consensus pattern (43 bp):
CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGCATTCCAT
Found at i:69865765 original size:27 final size:27
Alignment explanation
Indices: 69865689--69865766 Score: 75
Period size: 27 Copynumber: 2.9 Consensus size: 27
69865679 AACCATACAT
* *
69865689 CACATAGGGGCAAGATAGTCAATTTAC
1 CACATAGGGGCAAAATAGTCATTTTAC
** *** *
69865716 CATGTAGGGGCATTTTAGCCATTTTAC
1 CACATAGGGGCAAAATAGTCATTTTAC
*
69865743 CACATAAGGGCAAAATAGTCATTT
1 CACATAGGGGCAAAATAGTCATTT
69865767 CATCAAATTA
Statistics
Matches: 37, Mismatches: 14, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
27 37 1.00
ACGTcount: A:0.33, C:0.18, G:0.21, T:0.28
Consensus pattern (27 bp):
CACATAGGGGCAAAATAGTCATTTTAC
Found at i:69865911 original size:18 final size:18
Alignment explanation
Indices: 69865885--69865925 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
69865875 CATATTGCGG
69865885 GCCCATGTGGGCCCACAT-
1 GCCCATGT-GGCCCACATA
*
69865903 GCCCGTGTGGCCCACATA
1 GCCCATGTGGCCCACATA
69865921 GCCCA
1 GCCCA
69865926 AAAACAGCCT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
17 9 0.45
18 11 0.55
ACGTcount: A:0.17, C:0.41, G:0.27, T:0.15
Consensus pattern (18 bp):
GCCCATGTGGCCCACATA
Found at i:69878440 original size:47 final size:47
Alignment explanation
Indices: 69878387--69878680 Score: 417
Period size: 47 Copynumber: 6.2 Consensus size: 47
69878377 AATTCTAAAT
69878387 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
* *
69878434 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTATATATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
*
69878481 TGTGAATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATA
1 TGTG-ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATA
* * *
69878531 TGTGATAAGGCTTAATGGCCGATGTGATGAATGTGGAAGTGTATATG
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
* *
69878578 CGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
* * * * * * * *
69878625 TGTGACAGGGCCGAGTGGCCAATGTGATGGATGTGAAAGTGCATAAA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
69878672 TGTGATAAG
1 TGTGATAAG
69878681 TCCCGAAGGG
Statistics
Matches: 220, Mismatches: 24, Indels: 6
0.88 0.10 0.02
Matches are distributed among these distances:
47 142 0.65
48 34 0.15
49 34 0.15
50 10 0.05
ACGTcount: A:0.32, C:0.08, G:0.31, T:0.29
Consensus pattern (47 bp):
TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
Found at i:69878854 original size:37 final size:37
Alignment explanation
Indices: 69878798--69878876 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
69878788 TCGAGCTCTA
* * *
69878798 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
69878835 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
69878872 AAGAC
1 AAGAC
69878877 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:69883507 original size:28 final size:28
Alignment explanation
Indices: 69883475--69883531 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
69883465 ACAAGAAAAG
69883475 TATGAAAGAATTAAACACTAAGGTTGTA
1 TATGAAAGAATTAAACACTAAGGTTGTA
69883503 TATGAAAGAATTAAACACTAAGGTTGTA
1 TATGAAAGAATTAAACACTAAGGTTGTA
69883531 T
1 T
69883532 TGATTGATCT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.46, C:0.07, G:0.18, T:0.30
Consensus pattern (28 bp):
TATGAAAGAATTAAACACTAAGGTTGTA
Found at i:69883828 original size:21 final size:21
Alignment explanation
Indices: 69883803--69883842 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
69883793 GATATCTGGT
*
69883803 AAAAGGTATTGATACTTTTCG
1 AAAAGCTATTGATACTTTTCG
*
69883824 AAAAGCTGTTGATACTTTT
1 AAAAGCTATTGATACTTTT
69883843 TTGTAATTGA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.33, C:0.10, G:0.17, T:0.40
Consensus pattern (21 bp):
AAAAGCTATTGATACTTTTCG
Found at i:69895130 original size:23 final size:22
Alignment explanation
Indices: 69895101--69895150 Score: 82
Period size: 23 Copynumber: 2.2 Consensus size: 22
69895091 TACTGACTTT
69895101 AGCTCATTGGAGCTTATCGGTTC
1 AGCTCATTGGAGCTTA-CGGTTC
*
69895124 AGCTCATTGGAGCTTACTGTTC
1 AGCTCATTGGAGCTTACGGTTC
69895146 AGCTC
1 AGCTC
69895151 GATAGACCTT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
22 10 0.38
23 16 0.62
ACGTcount: A:0.18, C:0.24, G:0.24, T:0.34
Consensus pattern (22 bp):
AGCTCATTGGAGCTTACGGTTC
Found at i:69898293 original size:40 final size:40
Alignment explanation
Indices: 69898239--69898432 Score: 291
Period size: 40 Copynumber: 4.9 Consensus size: 40
69898229 GATATAGCTT
* *
69898239 CTCGCTCAAATGCCTTCGGGACTTAGCCCAGTTATAGTAA
1 CTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAA
*
69898279 CTCGCACAATTGCCTTCGGGACTTAGCCCGGTTATAGTAA
1 CTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAA
* *
69898319 CTCGCACAATTGCCTTCGGGACTTGGCCCGGTTATAGTAA
1 CTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAA
** * *
69898359 CTATCACAAATGCATTCGGGACTTAGCCCGGATATAGTAA
1 CTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAA
*
69898399 CTCGCACAAATGCCTTCGGG-GTTAGCCCGGTTAT
1 CTCGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
69898433 CAATCCGAAT
Statistics
Matches: 139, Mismatches: 15, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
39 12 0.09
40 127 0.91
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.27
Consensus pattern (40 bp):
CTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAA
Found at i:69919189 original size:39 final size:40
Alignment explanation
Indices: 69919144--69919303 Score: 189
Period size: 40 Copynumber: 4.0 Consensus size: 40
69919134 GCTCCTCGTT
* * *
69919144 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
**
69919184 C-AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * *
69919223 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * * *
69919263 CAAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGG-ATTTAGTAACTCGCA
69919303 C
1 C
69919304 CTTCAGATCT
Statistics
Matches: 106, Mismatches: 12, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
39 34 0.32
40 68 0.64
41 4 0.04
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
Found at i:69922083 original size:27 final size:26
Alignment explanation
Indices: 69922049--69922153 Score: 106
Period size: 27 Copynumber: 3.9 Consensus size: 26
69922039 TTACACTACA
69922049 AGGGTATTTCAGTAATTTTACAAATCG
1 AGGGTATTTC-GTAATTTTACAAATCG
69922076 -GGGATATTTCGGTAATTTTACAAATCG
1 AGGG-TATTTC-GTAATTTTACAAATCG
* *
69922103 AGGGTATTTCGATAATTTAACAAA-CC
1 AGGGTATTTCG-TAATTTTACAAATCG
* *
69922129 AGGAGTATTTTGTTAATTCTACAAA
1 AGG-GTATTTCG-TAATTTTACAAA
69922154 CTGGGGTCTT
Statistics
Matches: 67, Mismatches: 7, Indels: 8
0.82 0.09 0.10
Matches are distributed among these distances:
26 8 0.12
27 56 0.84
28 3 0.04
ACGTcount: A:0.34, C:0.11, G:0.18, T:0.36
Consensus pattern (26 bp):
AGGGTATTTCGTAATTTTACAAATCG
Found at i:69922138 original size:54 final size:55
Alignment explanation
Indices: 69922024--69922153 Score: 142
Period size: 54 Copynumber: 2.4 Consensus size: 55
69922014 GCCCTATAGG
* * * *
69922024 GATATTTTGGTAATTTTAC-ACTACAAGGGTATTTCAGTAATTTTACAAATCGGG
1 GATATTTTGGTAATTTTACAAATACAAGGGTATTTCAGTAATTTAACAAACCGGA
* *
69922078 GATATTTCGGTAATTTTACAAAT-CGAGGGTATTTC-GATAATTTAACAAACCAGGA
1 GATATTTTGGTAATTTTACAAATACAAGGGTATTTCAG-TAATTTAACAAACC-GGA
* *
69922133 G-TATTTTGTTAATTCTACAAA
1 GATATTTTGGTAATTTTACAAA
69922154 CTGGGGTCTT
Statistics
Matches: 64, Mismatches: 9, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
53 1 0.02
54 58 0.91
55 5 0.08
ACGTcount: A:0.34, C:0.12, G:0.17, T:0.38
Consensus pattern (55 bp):
GATATTTTGGTAATTTTACAAATACAAGGGTATTTCAGTAATTTAACAAACCGGA
Found at i:69931346 original size:43 final size:43
Alignment explanation
Indices: 69931258--69931381 Score: 133
Period size: 43 Copynumber: 2.9 Consensus size: 43
69931248 TACCGAGATG
* * * *
69931258 TGATTACATGTAAAACCATGTTTGGGACATTGACATTGTATTA
1 TGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTATTA
*
69931301 TGATTACGTGTAAGACCATGTCTGGGACATTGGCATCGT-TATA
1 TGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTAT-TA
*** * * *
69931344 TGATTTTTTGTAAGACCCTGTCTAGGACAGTGGCATCG
1 TGATTACATGTAAGACCATGTCTGGGACATTGGCATCG
69931382 ATATGTGACA
Statistics
Matches: 69, Mismatches: 11, Indels: 2
0.84 0.13 0.02
Matches are distributed among these distances:
42 1 0.01
43 68 0.99
ACGTcount: A:0.27, C:0.15, G:0.23, T:0.35
Consensus pattern (43 bp):
TGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTATTA
Found at i:69931399 original size:43 final size:43
Alignment explanation
Indices: 69931309--69931401 Score: 105
Period size: 43 Copynumber: 2.2 Consensus size: 43
69931299 TATGATTACG
* * * ** **
69931309 TGTAAGACCATGTCTGGGACATTGGCATCGTTATATGATTTTT
1 TGTAAGACCATGTCTAGGACAGTGGCATCGATATATGACATCA
* *
69931352 TGTAAGACCCTGTCTAGGACAGTGGCATCGATATGTGACATCA
1 TGTAAGACCATGTCTAGGACAGTGGCATCGATATATGACATCA
69931395 TGTAAGA
1 TGTAAGA
69931402 TCACATCTAG
Statistics
Matches: 41, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
43 41 1.00
ACGTcount: A:0.27, C:0.16, G:0.25, T:0.32
Consensus pattern (43 bp):
TGTAAGACCATGTCTAGGACAGTGGCATCGATATATGACATCA
Found at i:69932200 original size:22 final size:20
Alignment explanation
Indices: 69932175--69932224 Score: 55
Period size: 22 Copynumber: 2.3 Consensus size: 20
69932165 TGTTATGTAA
*
69932175 ATTTGATGATTTTGGCATATTG
1 ATTTGATG-TTTTGGC-TATGG
69932197 ATTTGGTATGTTTTGGCTATGG
1 ATTT-G-ATGTTTTGGCTATGG
69932219 ATTTGA
1 ATTTGA
69932225 GTAGTTAAGA
Statistics
Matches: 25, Mismatches: 1, Indels: 6
0.78 0.03 0.19
Matches are distributed among these distances:
20 1 0.04
21 1 0.04
22 12 0.48
23 8 0.32
24 3 0.12
ACGTcount: A:0.20, C:0.04, G:0.26, T:0.50
Consensus pattern (20 bp):
ATTTGATGTTTTGGCTATGG
Found at i:69933674 original size:43 final size:43
Alignment explanation
Indices: 69933610--69933738 Score: 145
Period size: 46 Copynumber: 2.9 Consensus size: 43
69933600 CTTTTATTCA
* * *
69933610 TTCACCGGAATT-TCGCCTGCTAGGCTCGAGGCCCGATATCAT-
1 TTCACCGGCATTATAGCCTGCTAGGCTCGAGGCCCGA-ATAATG
69933652 TTCACCGGCATTATAGCCTGCTAGGCTCGAAAGGCCCGAATAATG
1 TTCACCGGCATTATAGCCTGCTAGGCTCG--AGGCCCGAATAATG
* * *
69933697 TCTCACCGGCATAATAGTCTGCTAGGCTCAAAGGCCCGAATA
1 T-TCACCGGCATTATAGCCTGCTAGGCTC-GAGGCCCGAATA
69933739 TAATACCAGC
Statistics
Matches: 75, Mismatches: 6, Indels: 9
0.83 0.07 0.10
Matches are distributed among these distances:
42 11 0.15
43 15 0.20
44 4 0.05
45 20 0.27
46 25 0.33
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.23
Consensus pattern (43 bp):
TTCACCGGCATTATAGCCTGCTAGGCTCGAGGCCCGAATAATG
Found at i:69933719 original size:46 final size:44
Alignment explanation
Indices: 69933624--69933738 Score: 155
Period size: 46 Copynumber: 2.6 Consensus size: 44
69933614 CCGGAATTTC
* *
69933624 GCCTGCTAGGCTCG--AGGCCCGATATCATTTCACCGGCATTATA
1 GCCTGCTAGGCTCGAAAGGCCCGA-ATAATTTCACCGGCATAATA
69933667 GCCTGCTAGGCTCGAAAGGCCCGAATAATGTCTCACCGGCATAATA
1 GCCTGCTAGGCTCGAAAGGCCCGAATAAT-T-TCACCGGCATAATA
*
69933713 GTCTGCTAGGCTC-AAAGGCCCGAATA
1 GCCTGCTAGGCTCGAAAGGCCCGAATA
69933739 TAATACCAGC
Statistics
Matches: 65, Mismatches: 3, Indels: 6
0.88 0.04 0.08
Matches are distributed among these distances:
43 14 0.22
44 4 0.06
45 22 0.34
46 25 0.38
ACGTcount: A:0.25, C:0.29, G:0.24, T:0.22
Consensus pattern (44 bp):
GCCTGCTAGGCTCGAAAGGCCCGAATAATTTCACCGGCATAATA
Found at i:69933787 original size:38 final size:38
Alignment explanation
Indices: 69933731--69933891 Score: 259
Period size: 38 Copynumber: 4.2 Consensus size: 38
69933721 GGCTCAAAGG
* * * *
69933731 CCCGAATATAATACCAGCACTAGGCCTGTGGGATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
69933769 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
* * *
69933807 CCTGGATATATTACCAGCACGAAGCCTGCGGGATTTAG
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
69933845 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
69933883 CCCGGATAT
1 CCCGGATAT
69933892 CATATTTCGA
Statistics
Matches: 113, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
38 113 1.00
ACGTcount: A:0.30, C:0.25, G:0.24, T:0.21
Consensus pattern (38 bp):
CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
Found at i:69949186 original size:27 final size:27
Alignment explanation
Indices: 69949145--69949228 Score: 80
Period size: 27 Copynumber: 3.1 Consensus size: 27
69949135 GGCATTTGCT
** *
69949145 TTCATGAATCACCATAAAGGATTTTCA
1 TTCATGAATTGCCATAAAGGCTTTTCA
* * * *
69949172 TTCA-GATTGTGCCATTAAGGCTTTCCT
1 TTCATGAAT-TGCCATAAAGGCTTTTCA
*
69949199 TTCATGAATTGCCATAGAGGCTTTTCA
1 TTCATGAATTGCCATAAAGGCTTTTCA
69949226 TTC
1 TTC
69949229 CAGAGATTGC
Statistics
Matches: 43, Mismatches: 12, Indels: 4
0.73 0.20 0.07
Matches are distributed among these distances:
26 3 0.07
27 37 0.86
28 3 0.07
ACGTcount: A:0.26, C:0.20, G:0.15, T:0.38
Consensus pattern (27 bp):
TTCATGAATTGCCATAAAGGCTTTTCA
Found at i:69949246 original size:27 final size:27
Alignment explanation
Indices: 69949206--69949310 Score: 77
Period size: 28 Copynumber: 3.8 Consensus size: 27
69949196 CCTTTCATGA
* * * *
69949206 ATTGCCATAGAGGCTTTTCATTCCAGAG
1 ATTGCCACAAAGGC-TTCCATTACAGAG
* *
69949234 ATTGCCAC-AAGGCTTCCTTTGTCAGAG
1 ATTGCCACAAAGGCTTCCATT-ACAGAG
* * *
69949261 GTTGCCACAAAGGCTTTCTTTACAGAGG
1 ATTGCCACAAAGGCTTCCATTACAGA-G
*
69949289 TTTGCCACAAAGGCTTTCCATT
1 ATTGCCACAAAGGC-TTCCATT
69949311 TAGAGGTTCT
Statistics
Matches: 62, Mismatches: 11, Indels: 7
0.77 0.14 0.09
Matches are distributed among these distances:
26 5 0.08
27 20 0.32
28 32 0.52
29 5 0.08
ACGTcount: A:0.24, C:0.24, G:0.21, T:0.31
Consensus pattern (27 bp):
ATTGCCACAAAGGCTTCCATTACAGAG
Found at i:69949246 original size:54 final size:53
Alignment explanation
Indices: 69949128--69949253 Score: 130
Period size: 54 Copynumber: 2.3 Consensus size: 53
69949118 TCACATTATC
* *
69949128 CCACGAAGGCATTTGCTTTCATGAATCACCATAAAGGATTTTCATTCAGATTGTG
1 CCAC-AAGGC-TTTCCTTTCATGAATCACCATAAAGGATTTTCATTCAGAATGTG
* ** * *
69949183 CCATTAAGGCTTTCCTTTCATGAATTGCCATAGAGGCTTTTCATTCCAGAGAT-TG
1 CCA-CAAGGCTTTCCTTTCATGAATCACCATAAAGGATTTTCATT-CAGA-ATGTG
69949238 CCACAAGGC-TTCCTTT
1 CCACAAGGCTTTCCTTT
69949254 GTCAGAGGTT
Statistics
Matches: 60, Mismatches: 8, Indels: 8
0.79 0.11 0.11
Matches are distributed among these distances:
53 7 0.12
54 35 0.58
55 17 0.28
56 1 0.02
ACGTcount: A:0.25, C:0.23, G:0.17, T:0.34
Consensus pattern (53 bp):
CCACAAGGCTTTCCTTTCATGAATCACCATAAAGGATTTTCATTCAGAATGTG
Found at i:69949353 original size:57 final size:57
Alignment explanation
Indices: 69949269--69949525 Score: 224
Period size: 57 Copynumber: 4.6 Consensus size: 57
69949259 AGGTTGCCAC
* * *
69949269 AAAGGCT-TTCTTTACAGAGGTTTGCCACAAAGGCTTTCCATTTAGAGGTTCTACAA
1 AAAGGCTCTCCTTTGCAGAGGTTTGCCACAAAGGCTTTCCATTTAGAGGTTCTACAT
*
69949325 AAAGGCTCTCCTTTGCAGAGGTTTGCCACAAAGGCTTTTCATTTTAGAGGTTC-ACCAT
1 AAAGGCTCTCCTTTGCAGAGGTTTGCCACAAAGGCTTTCCA-TTTAGAGGTTCTA-CAT
* * ** * * * *
69949383 AAAGGATTTCCTTT-CAGAGGTTCACCACTAAA-GCTCTCCTTTTTAGAGGTT-TGCCAC
1 AAAGGCTCTCCTTTGCAGAGGTTTGCCAC-AAAGGCTTTCC-ATTTAGAGGTTCT-ACAT
* * * *
69949440 AAAGGCTCT-CTTTG-GGA-GTTTGCCACAAAGGCTTTCCTTTTAGAGGTTTTCCAT
1 AAAGGCTCTCCTTTGCAGAGGTTTGCCACAAAGGCTTTCCATTTAGAGGTTCTACAT
* * * * *
69949494 AAAGGTTCTCATTTGTAGAGCTTTTCCACAAA
1 AAAGGCTCTCCTTTGCAGAGGTTTGCCACAAA
69949526 AGATTTTATT
Statistics
Matches: 163, Mismatches: 25, Indels: 25
0.77 0.12 0.12
Matches are distributed among these distances:
54 25 0.15
55 18 0.11
56 15 0.09
57 77 0.47
58 28 0.17
ACGTcount: A:0.25, C:0.21, G:0.19, T:0.34
Consensus pattern (57 bp):
AAAGGCTCTCCTTTGCAGAGGTTTGCCACAAAGGCTTTCCATTTAGAGGTTCTACAT
Found at i:69949357 original size:29 final size:28
Alignment explanation
Indices: 69949235--69949503 Score: 196
Period size: 28 Copynumber: 9.6 Consensus size: 28
69949225 ATTCCAGAGA
69949235 TTGCCAC-AAGGCT-TCCTTTGTCAGAGG-
1 TTGCCACAAAGGCTCTCC-TT-TCAGAGGT
*
69949262 TTGCCACAAAGGCT-TTCTTTACAGAGGT
1 TTGCCACAAAGGCTCTCCTTT-CAGAGGT
*
69949290 TTGCCACAAAGGCTTTCCATTT-AGAGGT
1 TTGCCACAAAGGCTCTCC-TTTCAGAGGT
* *
69949318 TCT-ACAAAAAGGCTCTCCTTTGCAGAGGT
1 T-TGCCACAAAGGCTCTCCTTT-CAGAGGT
* * *
69949347 TTGCCACAAAGGCTTTTCATTTTAGAGGT
1 TTGCCACAAAGGC-TCTCCTTTCAGAGGT
** * * *
69949376 TCACCATAAAGGATTTCCTTTCAGAGGT
1 TTGCCACAAAGGCTCTCCTTTCAGAGGT
** *
69949404 TCACCACTAAA-GCTCTCCTTTTTAGAGGT
1 TTGCCAC-AAAGGCTCTCC-TTTCAGAGGT
**
69949433 TTGCCACAAAGGCTCT-CTTTGGGA-GT
1 TTGCCACAAAGGCTCTCCTTTCAGAGGT
* *
69949459 TTGCCACAAAGGCTTTCCTTTTAGAGGT
1 TTGCCACAAAGGCTCTCCTTTCAGAGGT
* * *
69949487 TTTCCATAAAGGTTCTC
1 TTGCCACAAAGGCTCTC
69949504 ATTTGTAGAG
Statistics
Matches: 196, Mismatches: 31, Indels: 29
0.77 0.12 0.11
Matches are distributed among these distances:
26 18 0.09
27 29 0.15
28 85 0.43
29 55 0.28
30 9 0.05
ACGTcount: A:0.24, C:0.23, G:0.20, T:0.33
Consensus pattern (28 bp):
TTGCCACAAAGGCTCTCCTTTCAGAGGT
Found at i:69949403 original size:86 final size:84
Alignment explanation
Indices: 69949242--69949574 Score: 309
Period size: 86 Copynumber: 3.9 Consensus size: 84
69949232 AGATTGCCAC
* *
69949242 AAGGCT-TCCTTTGTCAGAGG-TTGCCACAAAGGCTTTCTTTACAGAGGTTTGCCACAAAGGCTT
1 AAGGCTCTCCTTTG-CAGAGGTTTGCCACAAAGGCTTTCTTT-TAGAGGTTCGCCACAAAGGCTT
*
69949305 TCCATTT-AGAGGTTCTACAAA
64 TCC-TTTCAGAGGTTCTACATA
* * *
69949326 AAGGCTCTCCTTTGCAGAGGTTTGCCACAAAGGCTTTTCATTTTAGAGGTTCACCATAAAGGATT
1 AAGGCTCTCCTTTGCAGAGGTTTGCCACAAAGGC-TTTC-TTTTAGAGGTTCGCCACAAAGGCTT
69949391 TCCTTTCAGAGGTTC-ACCACTA
64 TCCTTTCAGAGGTTCTA-CA-TA
** * ** *
69949413 AA-GCTCTCCTTTTTAGAGGTTTGCCACAAAGGCTCTCTTTGGGA-GTTTGCCACAAAGGCTTTC
1 AAGGCTCTCCTTTGCAGAGGTTTGCCACAAAGGCTTTCTTTTAGAGGTTCGCCACAAAGGCTTTC
* * *
69949476 CTTTTAGAGGTTTTCCATA
66 CTTTCAGAGGTTCTACATA
* * * * * ** * *
69949495 AAGGTTCTCATTTGTAGAGCTTTTCCACAAAAGATTTTATTTTTAAAGGTTCGCCACAAAGGCTT
1 AAGGCTCTCCTTTGCAGAGGTTTGCCAC-AAAGGCTTT-CTTTTAGAGGTTCGCCACAAAGGCTT
*
69949560 TCCTTTACAAAGGTT
64 TCCTTT-CAGAGGTT
69949575 GGCTACAAGG
Statistics
Matches: 203, Mismatches: 33, Indels: 23
0.78 0.13 0.09
Matches are distributed among these distances:
82 4 0.02
83 48 0.24
84 23 0.11
85 31 0.15
86 85 0.42
87 12 0.06
ACGTcount: A:0.25, C:0.21, G:0.20, T:0.34
Consensus pattern (84 bp):
AAGGCTCTCCTTTGCAGAGGTTTGCCACAAAGGCTTTCTTTTAGAGGTTCGCCACAAAGGCTTTC
CTTTCAGAGGTTCTACATA
Found at i:69949538 original size:112 final size:115
Alignment explanation
Indices: 69949325--69949590 Score: 281
Period size: 112 Copynumber: 2.3 Consensus size: 115
69949315 GGTTCTACAA
69949325 AAAGGCTCTCCTTTGCAGAGGTTTGCCACAAAGGCTTTTCATTTTAGAGGTTCACCATAAAGGAT
1 AAAGGCTCTCCTTTGCAGAGGTTTGCCACAAAGGCTTTTCATTTTAGAGGTTCACCATAAAGGAT
* * * * * * *
69949390 TTCCTTTCAGAGGTTCACCACTAAAGCTCTCCTTTTTAGAGGTTTGCCAC
66 TTCATTTCAGAGCTTCACCACAAAAGATCTCATTTTTAAAGGTTCGCCAC
* * **
69949440 AAAGGCTCT-CTTTG-GGA-GTTTGCCACAAAGGC-TTTCCTTTTAGAGGTTTTCCATAAAGG-T
1 AAAGGCTCTCCTTTGCAGAGGTTTGCCACAAAGGCTTTTCATTTTAGAGGTTCACCATAAAGGAT
* ** * *
69949500 TCTCATTTGTAGAGCTTTTCCACAAAAGATTTTATTTTTAAAGGTTCGCCAC
66 T-TCATTT-CAGAGCTTCACCACAAAAGATCTCATTTTTAAAGGTTCGCCAC
* * * * * *
69949552 AAAGGCTTTCCTTTACAAAGGTTGGCTACAAGGGCTTTT
1 AAAGGCTCTCCTTTGCAGAGGTTTGCCACAAAGGCTTTT
69949591 TGTAACAACT
Statistics
Matches: 122, Mismatches: 23, Indels: 11
0.78 0.15 0.07
Matches are distributed among these distances:
110 2 0.02
111 29 0.24
112 55 0.45
113 6 0.05
114 6 0.05
115 21 0.17
116 3 0.02
ACGTcount: A:0.25, C:0.21, G:0.20, T:0.35
Consensus pattern (115 bp):
AAAGGCTCTCCTTTGCAGAGGTTTGCCACAAAGGCTTTTCATTTTAGAGGTTCACCATAAAGGAT
TTCATTTCAGAGCTTCACCACAAAAGATCTCATTTTTAAAGGTTCGCCAC
Found at i:69952006 original size:43 final size:43
Alignment explanation
Indices: 69951843--69952015 Score: 181
Period size: 43 Copynumber: 4.0 Consensus size: 43
69951833 GCACCACTAT
* *
69951843 AGAACATGACCTTTAGTGGT--TTTCTCACAAAAACGCCGCTACA
1 AGAACATGACCTTTAGCGGTGCTTTC-CCCAAAAACGCCGCTA-A
* * * *
69951886 A-AACATGACCTTTAGCGGCGCTTTCCCCACAAACACTGCTAA
1 AGAACATGACCTTTAGCGGTGCTTTCCCCAAAAACGCCGCTAA
* * *
69951928 AGGACATGACCTTTAGCGGTACTTTCCCCACAAACGCCGCTAA
1 AGAACATGACCTTTAGCGGTGCTTTCCCCAAAAACGCCGCTAA
** * **
69951971 AGAACATGACCTTTAGCAATGCTTTTCCCAAAAACGTGGCTAA
1 AGAACATGACCTTTAGCGGTGCTTTCCCCAAAAACGCCGCTAA
69952014 AG
1 AG
69952016 GTCTTGCTCT
Statistics
Matches: 108, Mismatches: 19, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
42 18 0.17
43 86 0.80
44 4 0.04
ACGTcount: A:0.32, C:0.28, G:0.17, T:0.23
Consensus pattern (43 bp):
AGAACATGACCTTTAGCGGTGCTTTCCCCAAAAACGCCGCTAA
Found at i:69952032 original size:86 final size:86
Alignment explanation
Indices: 69951846--69952005 Score: 209
Period size: 86 Copynumber: 1.9 Consensus size: 86
69951836 CCACTATAGA
* * * **
69951846 ACATGACCTTTAGTGGT--TTTCTCACAAAAACGCCGCTACAAAACATGACCTTTAGCGGCGCTT
1 ACATGACCTTTAGCGGTACTTTC-CCCACAAACGCCGCTACAAAACATGACCTTTAGCAACGCTT
69951909 TCCCCACAAACACTGCTAAAGG
65 TCCCCACAAACACTGCTAAAGG
*
69951931 ACATGACCTTTAGCGGTACTTTCCCCACAAACGCCGCTA-AAGAACATGACCTTTAGCAATGCTT
1 ACATGACCTTTAGCGGTACTTTCCCCACAAACGCCGCTACAA-AACATGACCTTTAGCAACGCTT
* *
69951995 TTCCCAAAAAC
65 TCCCCACAAAC
69952006 GTGGCTAAAG
Statistics
Matches: 64, Mismatches: 8, Indels: 5
0.83 0.10 0.06
Matches are distributed among these distances:
85 18 0.28
86 42 0.66
87 4 0.06
ACGTcount: A:0.31, C:0.30, G:0.15, T:0.24
Consensus pattern (86 bp):
ACATGACCTTTAGCGGTACTTTCCCCACAAACGCCGCTACAAAACATGACCTTTAGCAACGCTTT
CCCCACAAACACTGCTAAAGG
Found at i:69954171 original size:42 final size:42
Alignment explanation
Indices: 69953973--69954172 Score: 143
Period size: 42 Copynumber: 4.6 Consensus size: 42
69953963 TAAGATGCCA
* * *
69953973 ATGCCATATTCCA-ATTATGGTCTTACATGGGATCACATGTCG
1 ATGCCATATCCCAGA-TATGGTCTTACACGGGATCACATATCG
* * * *
69954015 ATGCCAATAGCCCAGCTATGGTCTTACACGATG-TCTCATATCG
1 ATGCC-ATATCCCAGATATGGTCTTACACG-GGATCACATATCG
* * * * *** *
69954058 ATACCATGTCCCAAACATGGTCTTACACAAAATCACATATTAATGCCA
1 ATGCCATATCCCAGATATGGTCTTACACGGGATCAC--A-T-AT--CG
* *
69954106 ATGCCATATCCCAGATATAGTCTTACATGGGATCACATATCG
1 ATGCCATATCCCAGATATGGTCTTACACGGGATCACATATCG
*
69954148 AGGCCATATCCCAGATATGGTCTTA
1 ATGCCATATCCCAGATATGGTCTTA
69954173 AACGAAACCA
Statistics
Matches: 118, Mismatches: 30, Indels: 20
0.70 0.18 0.12
Matches are distributed among these distances:
42 50 0.42
43 31 0.26
44 4 0.03
45 2 0.02
46 3 0.03
48 28 0.24
ACGTcount: A:0.30, C:0.25, G:0.16, T:0.28
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACACGGGATCACATATCG
Found at i:69957200 original size:26 final size:26
Alignment explanation
Indices: 69957143--69957202 Score: 86
Period size: 26 Copynumber: 2.3 Consensus size: 26
69957133 GCCCCGATAT
69957143 ATGGCTCTTTGTGAGCTTCTAGACTA
1 ATGGCTCTTTGTGAGCTTCTAGACTA
* *
69957169 AAGGCTCTTTGTGAGCTTCCTA-ATTA
1 ATGGCTCTTTGTGAGCTT-CTAGACTA
69957195 ATGGCTCT
1 ATGGCTCT
69957203 CCGGAGCTTC
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
26 27 0.90
27 3 0.10
ACGTcount: A:0.20, C:0.20, G:0.22, T:0.38
Consensus pattern (26 bp):
ATGGCTCTTTGTGAGCTTCTAGACTA
Found at i:69958722 original size:93 final size:93
Alignment explanation
Indices: 69958563--69958733 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
69958553 GGATGGTTGA
* * *
69958563 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTGTGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
69958628 TGAGTCCGAGTTCGAGAGATGTAACTAG
66 TGAGTCCGAGTTCGAGAGATGTAACTAG
* * *
69958656 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
69958721 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
69958734 ACTTATGGGC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGAGAGATGTAACTAG
Found at i:69958738 original size:46 final size:46
Alignment explanation
Indices: 69958567--69958741 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
69958557 GGTTGAGCAT
* * * *
69958567 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTGTGGATGCGAATGT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACGC
*
69958613 CCGAACTCGTTGAGTTGAGTCCGAGTT--C-GA-GAGATGT-AACTAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATG-GATGTGAAC---GC
*
69958658 ATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACGC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACGC
*
69958706 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
69958742 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 7, Indels: 22
0.79 0.05 0.16
Matches are distributed among these distances:
42 3 0.03
43 4 0.04
44 1 0.01
45 1 0.01
46 63 0.57
47 26 0.23
48 2 0.02
49 1 0.01
50 6 0.05
51 4 0.04
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACGC
Found at i:69965230 original size:40 final size:41
Alignment explanation
Indices: 69965175--69965349 Score: 142
Period size: 41 Copynumber: 4.3 Consensus size: 41
69965165 AAAGTCATAC
* *
69965175 TTTGCAGCGTTTTTCTCAT-AACGCTACTAATGCTTGACCT
1 TTTGCGGCATTTTTCTCATAAACGCTACTAATGCTTGACCT
* *
69965215 TTTGCGGCATTTTTCTCAT-AGCAC-AGCTAATGCTTGACCT
1 TTTGCGGCATTTTTCTCATAAACGCTA-CTAATGCTTGACCT
* ** * ** *
69965255 TTTGTGGTGTTTTTCTCATAAATGCCGCTAATGCTTAACCT
1 TTTGCGGCATTTTTCTCATAAACGCTACTAATGCTTGACCT
** * * * *
69965296 TTTG-GAGTTTTTTTCTCATAAACGTTGCTACTGCTTTACCT
1 TTTGCG-GCATTTTTCTCATAAACGCTACTAATGCTTGACCT
*
69965337 ATTGCGGCATTTT
1 TTTGCGGCATTTT
69965350 CCGTTAGTGC
Statistics
Matches: 109, Mismatches: 21, Indels: 9
0.78 0.15 0.06
Matches are distributed among these distances:
39 1 0.01
40 51 0.47
41 56 0.51
42 1 0.01
ACGTcount: A:0.19, C:0.22, G:0.17, T:0.43
Consensus pattern (41 bp):
TTTGCGGCATTTTTCTCATAAACGCTACTAATGCTTGACCT
Found at i:69965331 original size:41 final size:41
Alignment explanation
Indices: 69965183--69965319 Score: 136
Period size: 40 Copynumber: 3.4 Consensus size: 41
69965173 ACTTTGCAGC
** * * *
69965183 GTTTTTCTCAT-AACGCTACTAATGCTTGACCTTTTGCGGC
1 GTTTTTCTCATAAACGCCGCTAATGCTTAACCTTTTGTGGT
* * * * *
69965223 ATTTTTCTCAT-AGCACAGCTAATGCTTGACCTTTTGTGGT
1 GTTTTTCTCATAAACGCCGCTAATGCTTAACCTTTTGTGGT
*
69965263 GTTTTTCTCATAAATGCCGCTAATGCTTAACCTTTTG-GAGT
1 GTTTTTCTCATAAACGCCGCTAATGCTTAACCTTTTGTG-GT
*
69965304 TTTTTTCTCATAAACG
1 GTTTTTCTCATAAACG
69965320 TTGCTACTGC
Statistics
Matches: 80, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
40 44 0.55
41 36 0.45
ACGTcount: A:0.20, C:0.21, G:0.16, T:0.42
Consensus pattern (41 bp):
GTTTTTCTCATAAACGCCGCTAATGCTTAACCTTTTGTGGT
Found at i:69975944 original size:29 final size:28
Alignment explanation
Indices: 69975851--69975949 Score: 110
Period size: 27 Copynumber: 3.5 Consensus size: 28
69975841 TATATTAAGT
* *
69975851 CCGCACACTCAGTGCTATATAATC-AAC
1 CCGCACACTTAGTGCTATACAATCAAAC
* *
69975878 TCGCACACTTAGTGCTATATAATCAAAC
1 CCGCACACTTAGTGCTATACAATCAAAC
* * * *
69975906 TCGCACACTTAGTGTTGTACAATTTAAAC
1 CCGCACACTTAGTGCTATACAA-TCAAAC
69975935 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
69975950 CAATCTCATG
Statistics
Matches: 62, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
27 22 0.35
28 22 0.35
29 18 0.29
ACGTcount: A:0.31, C:0.28, G:0.13, T:0.27
Consensus pattern (28 bp):
CCGCACACTTAGTGCTATACAATCAAAC
Found at i:69978462 original size:10 final size:10
Alignment explanation
Indices: 69978447--69978475 Score: 51
Period size: 9 Copynumber: 3.0 Consensus size: 10
69978437 ATTTCGTGTT
69978447 TGAATAGAAA
1 TGAATAGAAA
69978457 TGAATAG-AA
1 TGAATAGAAA
69978466 TGAATAGAAA
1 TGAATAGAAA
69978476 AAATGGGAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
9 9 0.50
10 9 0.50
ACGTcount: A:0.59, C:0.00, G:0.21, T:0.21
Consensus pattern (10 bp):
TGAATAGAAA
Found at i:69984907 original size:36 final size:36
Alignment explanation
Indices: 69984856--69985033 Score: 153
Period size: 36 Copynumber: 5.0 Consensus size: 36
69984846 TCCACTGGGA
*
69984856 CTTCAGCCTTGTCTTCATGTGCACGTCAAGGTTGAT
1 CTTCAGCCTCGTCTTCATGTGCACGTCAAGGTTGAT
* * * ***
69984892 CTTCAGCCTCATCTTCATGTCCATGTTGGGGTTGAT
1 CTTCAGCCTCGTCTTCATGTGCACGTCAAGGTTGAT
* * * * *
69984928 CTTCGGCCTCAT-ATCATGTACACGTTGAA-GTTGAT
1 CTTCAGCCTCGTCTTCATGTGCACG-TCAAGGTTGAT
* * *
69984963 CTTCAGCCTCGTCTTTATGTGCATGTCAGGGTTGAT
1 CTTCAGCCTCGTCTTCATGTGCACGTCAAGGTTGAT
* * * * *
69984999 GTTCGGTCTCGTCTTCATATGCACGTCGAGGTTGA
1 CTTCAGCCTCGTCTTCATGTGCACGTCAAGGTTGA
69985034 ACGGTGACCT
Statistics
Matches: 109, Mismatches: 30, Indels: 6
0.75 0.21 0.04
Matches are distributed among these distances:
35 27 0.25
36 82 0.75
ACGTcount: A:0.16, C:0.24, G:0.24, T:0.37
Consensus pattern (36 bp):
CTTCAGCCTCGTCTTCATGTGCACGTCAAGGTTGAT
Found at i:69984961 original size:35 final size:36
Alignment explanation
Indices: 69984886--69984972 Score: 113
Period size: 35 Copynumber: 2.4 Consensus size: 36
69984876 GCACGTCAAG
* * * **
69984886 GTTGATCTTCAGCCTCATCTTCATGTCCATGTTGGG
1 GTTGATCTTCAGCCTCATCATCATGTACACGTTGAA
*
69984922 GTTGATCTTCGGCCTCAT-ATCATGTACACGTTGAA
1 GTTGATCTTCAGCCTCATCATCATGTACACGTTGAA
69984957 GTTGATCTTCAGCCTC
1 GTTGATCTTCAGCCTC
69984973 GTCTTTATGT
Statistics
Matches: 44, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
35 27 0.61
36 17 0.39
ACGTcount: A:0.17, C:0.25, G:0.21, T:0.37
Consensus pattern (36 bp):
GTTGATCTTCAGCCTCATCATCATGTACACGTTGAA
Found at i:69992865 original size:18 final size:17
Alignment explanation
Indices: 69992842--69992903 Score: 54
Period size: 18 Copynumber: 3.4 Consensus size: 17
69992832 TACTCCCCTA
69992842 TTTACTTTCCCTCAAACT
1 TTTACTTTCCC-CAAACT
* *
69992860 TTTACTCT-CCAAAACTTT
1 TTTACTTTCCCCAAAC--T
69992878 TTTACTTTCCCCCTAAACT
1 TTTACTTT-CCCC-AAACT
69992897 TTTACTT
1 TTTACTT
69992904 CTCATTCTTT
Statistics
Matches: 35, Mismatches: 4, Indels: 9
0.73 0.08 0.19
Matches are distributed among these distances:
16 4 0.11
17 2 0.06
18 15 0.43
19 8 0.23
20 2 0.06
21 4 0.11
ACGTcount: A:0.23, C:0.31, G:0.00, T:0.47
Consensus pattern (17 bp):
TTTACTTTCCCCAAACT
Found at i:70001501 original size:31 final size:27
Alignment explanation
Indices: 70001463--70001525 Score: 81
Period size: 31 Copynumber: 2.2 Consensus size: 27
70001453 ATTTTTTTAA
70001463 ATTTTTTTAAAAGTTATATATATCTATATAT
1 ATTTTTTTAAAA-TTATATA-AT-TA-ATAT
*
70001494 ATTTTTTTAATATTATATAATTAATAT
1 ATTTTTTTAAAATTATATAATTAATAT
70001521 ATTTT
1 ATTTT
70001526 AAAAATATTA
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
27 9 0.29
28 2 0.06
29 2 0.06
30 7 0.23
31 11 0.35
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.59
Consensus pattern (27 bp):
ATTTTTTTAAAATTATATAATTAATAT
Found at i:70005221 original size:47 final size:47
Alignment explanation
Indices: 70005152--70005648 Score: 809
Period size: 47 Copynumber: 10.5 Consensus size: 47
70005142 TGTGTATACA
70005152 TGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
1 TGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
*
70005199 TGAAAGTGTATATATGAGATAAGGCCTAATGGCCGATGTGATGAATG
1 TGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
70005246 TGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
1 TGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
70005293 TGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
1 TGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
70005340 TGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
1 TGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
70005389 TGAAAGTGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
1 TGAAA--GTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
*
70005440 TGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATG
1 TGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
*
70005487 TGAAAGTGTATATA--TGATAAGGCCTAATGGCCAATGTGATGAATG
1 TGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
*
70005532 TGAAAGTGTATATATGTGATAAGGCCTAATGGTCGATGTGATGAATG
1 TGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
* * * * * * *
70005579 TGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATG
1 TGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
* *
70005626 TGACAGTGTATAAATGTGATAAG
1 TGAAAGTGTATATATGTGATAAG
70005649 TCCCGAAGGG
Statistics
Matches: 425, Mismatches: 19, Indels: 12
0.93 0.04 0.03
Matches are distributed among these distances:
45 43 0.10
47 286 0.67
49 47 0.11
51 49 0.12
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
TGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
Found at i:70005262 original size:25 final size:25
Alignment explanation
Indices: 70005234--70005312 Score: 65
Period size: 25 Copynumber: 3.3 Consensus size: 25
70005224 CTAATGGCCG
70005234 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
* *** ****
70005259 ATGTGAT-AAGGCCTAA-TG-GCCG
1 ATGTGATGAATGTGAAAGTGTATAT
70005281 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
70005306 ATGTGAT
1 ATGTGAT
70005313 AAGGCCTAAT
Statistics
Matches: 35, Mismatches: 16, Indels: 6
0.61 0.28 0.11
Matches are distributed among these distances:
22 7 0.20
23 7 0.20
24 7 0.20
25 14 0.40
ACGTcount: A:0.33, C:0.05, G:0.29, T:0.33
Consensus pattern (25 bp):
ATGTGATGAATGTGAAAGTGTATAT
Found at i:70005548 original size:25 final size:25
Alignment explanation
Indices: 70005520--70005597 Score: 72
Period size: 25 Copynumber: 3.2 Consensus size: 25
70005510 CTAATGGCCA
70005520 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
* *** * **
70005545 ATGTGAT-AAGGCCTAA-TG-GTCG
1 ATGTGATGAATGTGAAAGTGTATAT
70005567 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
70005592 ATGTGA
1 ATGTGA
70005598 CAGGGCCGAG
Statistics
Matches: 36, Mismatches: 14, Indels: 6
0.64 0.25 0.11
Matches are distributed among these distances:
22 8 0.22
23 7 0.19
24 7 0.19
25 14 0.39
ACGTcount: A:0.33, C:0.04, G:0.29, T:0.33
Consensus pattern (25 bp):
ATGTGATGAATGTGAAAGTGTATAT
Found at i:70005821 original size:37 final size:37
Alignment explanation
Indices: 70005765--70005843 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
70005755 CCGAGCTCTA
* * *
70005765 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
70005802 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
70005839 AAGAC
1 AAGAC
70005844 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:70008071 original size:21 final size:21
Alignment explanation
Indices: 70008030--70008080 Score: 68
Period size: 21 Copynumber: 2.5 Consensus size: 21
70008020 TATCGATTCA
* *
70008030 GTATCGATA-ATTTTCTTAAG
1 GTATCGATATATTTCCTAAAG
70008050 GTATCGATATATTTCCTAAAG
1 GTATCGATATATTTCCTAAAG
*
70008071 GTATAGATAT
1 GTATCGATAT
70008081 TCCTACTCCA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
20 9 0.33
21 18 0.67
ACGTcount: A:0.33, C:0.10, G:0.16, T:0.41
Consensus pattern (21 bp):
GTATCGATATATTTCCTAAAG
Found at i:70010630 original size:21 final size:21
Alignment explanation
Indices: 70010606--70010662 Score: 78
Period size: 21 Copynumber: 2.7 Consensus size: 21
70010596 TCCAACGACT
* *
70010606 GTGGTCGATGATGGCCCAATG
1 GTGGTCGACGATGACCCAATG
* *
70010627 GTGGTCAACAATGACCCAATG
1 GTGGTCGACGATGACCCAATG
70010648 GTGGTCGACGATGAC
1 GTGGTCGACGATGAC
70010663 AGTGACGTGG
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.25, C:0.21, G:0.33, T:0.21
Consensus pattern (21 bp):
GTGGTCGACGATGACCCAATG
Found at i:70012058 original size:39 final size:39
Alignment explanation
Indices: 70011999--70012077 Score: 149
Period size: 39 Copynumber: 2.0 Consensus size: 39
70011989 TGCTCCTTCG
*
70011999 AGAGCCTTATGTTGGTATACCAAAGGATTGTGAGTGCTT
1 AGAGCCTTATGTTGGCATACCAAAGGATTGTGAGTGCTT
70012038 AGAGCCTTATGTTGGCATACCAAAGGATTGTGAGTGCTT
1 AGAGCCTTATGTTGGCATACCAAAGGATTGTGAGTGCTT
70012077 A
1 A
70012078 CCTCTCAGTT
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.27, C:0.14, G:0.28, T:0.32
Consensus pattern (39 bp):
AGAGCCTTATGTTGGCATACCAAAGGATTGTGAGTGCTT
Found at i:70016307 original size:40 final size:40
Alignment explanation
Indices: 70016192--70016307 Score: 124
Period size: 40 Copynumber: 2.9 Consensus size: 40
70016182 CTTGTACGGG
* * * * * *
70016192 TTTGTACTTTGATGCCTCTAATTGCACAATCATACCTCTG
1 TTTGCACTTTGATGCCTCTAATTGCAAAATCGTGCCCCTA
* * *
70016232 TTTGCACTTTGGTGCCTCTAATTGTAAAATTGTGCCCCTA
1 TTTGCACTTTGATGCCTCTAATTGCAAAATCGTGCCCCTA
* * *
70016272 TTTGCACTTCGATACCTCTAATTGCATAATCGTGCC
1 TTTGCACTTTGATGCCTCTAATTGCAAAATCGTGCC
70016308 TCTGATAGCA
Statistics
Matches: 61, Mismatches: 15, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
40 61 1.00
ACGTcount: A:0.22, C:0.25, G:0.15, T:0.39
Consensus pattern (40 bp):
TTTGCACTTTGATGCCTCTAATTGCAAAATCGTGCCCCTA
Found at i:70022209 original size:52 final size:51
Alignment explanation
Indices: 70022113--70022214 Score: 120
Period size: 52 Copynumber: 2.0 Consensus size: 51
70022103 TAGAAATTGA
* *
70022113 GAAAATAAAGAAATGGGAAACATTTGGAAATAATTATGATTTTCTTCAAAAT
1 GAAAATAAAAAAATGGGAAACATTTGGAAATAATCATGATTTTC-TCAAAAT
*
70022165 GAAAATGAAAAAAAT-GGAATCATTTGGAAATTAA-CATGGA-TTTCTCAAAA
1 GAAAAT-AAAAAAATGGGAAACATTTGGAAA-TAATCAT-GATTTTCTCAAAA
70022215 ATTACCTGAA
Statistics
Matches: 44, Mismatches: 3, Indels: 7
0.81 0.06 0.13
Matches are distributed among these distances:
51 6 0.14
52 26 0.59
53 12 0.27
ACGTcount: A:0.49, C:0.07, G:0.16, T:0.28
Consensus pattern (51 bp):
GAAAATAAAAAAATGGGAAACATTTGGAAATAATCATGATTTTCTCAAAAT
Found at i:70023504 original size:24 final size:26
Alignment explanation
Indices: 70023475--70023523 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
70023465 CTTGTTTTAA
* *
70023475 TATTTG-TTT-TTATGTTTTTAAATG
1 TATTTGATTTATTATATTTTAAAATG
70023499 TATTTGATTTATTATATTTTAAAAT
1 TATTTGATTTATTATATTTTAAAAT
70023524 TTTTTATTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 6 0.29
25 3 0.14
26 12 0.57
ACGTcount: A:0.29, C:0.00, G:0.08, T:0.63
Consensus pattern (26 bp):
TATTTGATTTATTATATTTTAAAATG
Found at i:70023875 original size:18 final size:17
Alignment explanation
Indices: 70023842--70023952 Score: 71
Period size: 19 Copynumber: 6.0 Consensus size: 17
70023832 AAAAAAATCA
70023842 ATAAAAATTATAAAAAT
1 ATAAAAATTATAAAAAT
*
70023859 ATAAAAATTTATAAAAAA
1 ATAAAAA-TTATAAAAAT
* * **
70023877 ATAGAAAAGTATTTAATTT
1 ATA-AAAATTA-TAAAAAT
*
70023896 AGATAAAATTATAAAAATT
1 ATA-AAAATTATAAAAA-T
70023915 ATTAAAAATATATCAAAAAT
1 A-TAAAAAT-TAT-AAAAAT
70023935 ATTATAAAA-TATAAAAAT
1 A-TA-AAAATTATAAAAAT
70023953 TTCATAAAAG
Statistics
Matches: 73, Mismatches: 13, Indels: 15
0.72 0.13 0.15
Matches are distributed among these distances:
17 7 0.10
18 23 0.32
19 25 0.34
20 9 0.12
21 9 0.12
ACGTcount: A:0.64, C:0.01, G:0.03, T:0.32
Consensus pattern (17 bp):
ATAAAAATTATAAAAAT
Found at i:70023922 original size:11 final size:9
Alignment explanation
Indices: 70023842--70023953 Score: 70
Period size: 10 Copynumber: 12.0 Consensus size: 9
70023832 AAAAAAATCA
70023842 ATAAAAATT
1 ATAAAAATT
70023851 ATAAAAA-T
1 ATAAAAATT
70023859 ATAAAAATTT
1 ATAAAAA-TT
*
70023869 ATAAAAA-A
1 ATAAAAATT
*
70023877 ATAGAAAAGT
1 ATA-AAAATT
** *
70023887 ATTTAATTT
1 ATAAAAATT
*
70023896 AGATAAAATT
1 ATA-AAAATT
70023906 ATAAAAATT
1 ATAAAAATT
70023915 ATTAAAAATAT
1 A-TAAAAAT-T
70023926 ATCAAAAA-T
1 AT-AAAAATT
70023935 ATTATAAAA-T
1 A-TA-AAAATT
70023945 ATAAAAATT
1 ATAAAAATT
70023954 TCATAAAAGT
Statistics
Matches: 81, Mismatches: 11, Indels: 22
0.71 0.10 0.19
Matches are distributed among these distances:
8 15 0.19
9 28 0.35
10 31 0.38
11 7 0.09
ACGTcount: A:0.63, C:0.01, G:0.03, T:0.33
Consensus pattern (9 bp):
ATAAAAATT
Found at i:70023934 original size:21 final size:20
Alignment explanation
Indices: 70023898--70023951 Score: 69
Period size: 21 Copynumber: 2.8 Consensus size: 20
70023888 TTTAATTTAG
70023898 ATAAAAT-TATAAAAATTATT
1 ATAAAATATATAAAAA-TATT
70023918 A-AAAATATATCAAAAATATT
1 ATAAAATATAT-AAAAATATT
70023938 ATAAAATATA-AAAA
1 ATAAAATATATAAAA
70023952 TTTCATAAAA
Statistics
Matches: 31, Mismatches: 0, Indels: 7
0.82 0.00 0.18
Matches are distributed among these distances:
19 9 0.29
20 9 0.29
21 13 0.42
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (20 bp):
ATAAAATATATAAAAATATT
Found at i:70024119 original size:32 final size:30
Alignment explanation
Indices: 70024082--70024149 Score: 73
Period size: 32 Copynumber: 2.2 Consensus size: 30
70024072 CTAAAATGAA
*
70024082 TAAAAACAATAAGAATATAGAAAATAAGTTAT
1 TAAAAACAATAAAAATATAGAAAA-AA-TTAT
** * *
70024114 TAAAAATTATAAAAATATATAGAAAATTAT
1 TAAAAACAATAAAAATATAGAAAAAATTAT
70024144 TAAAAA
1 TAAAAA
70024150 TTATTAAAAT
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
30 10 0.32
31 2 0.06
32 19 0.61
ACGTcount: A:0.65, C:0.01, G:0.06, T:0.28
Consensus pattern (30 bp):
TAAAAACAATAAAAATATAGAAAAAATTAT
Found at i:70024132 original size:8 final size:9
Alignment explanation
Indices: 70024114--70024160 Score: 58
Period size: 9 Copynumber: 4.9 Consensus size: 9
70024104 AATAAGTTAT
70024114 TAAAAATTA
1 TAAAAATTA
70024123 TAAAAATATA
1 TAAAAAT-TA
70024133 TAGAAAATTA
1 TA-AAAATTA
70024143 TTAAAAATTA
1 -TAAAAATTA
*
70024153 TTAAAATT
1 TAAAAATT
70024161 TTTAGAAAAA
Statistics
Matches: 34, Mismatches: 1, Indels: 6
0.83 0.02 0.15
Matches are distributed among these distances:
9 14 0.41
10 13 0.38
11 7 0.21
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.36
Consensus pattern (9 bp):
TAAAAATTA
Found at i:70024146 original size:30 final size:30
Alignment explanation
Indices: 70024110--70024169 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
70024100 AGAAAATAAG
70024110 TTATTAAAAATTATAAAAATATATAGAAAA
1 TTATTAAAAATTATAAAAATATATAGAAAA
* * *
70024140 TTATTAAAAATTATTAAAATTTTTAGAAAA
1 TTATTAAAAATTATAAAAATATATAGAAAA
70024170 AATATATATT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.58, C:0.00, G:0.03, T:0.38
Consensus pattern (30 bp):
TTATTAAAAATTATAAAAATATATAGAAAA
Found at i:70024596 original size:20 final size:21
Alignment explanation
Indices: 70024571--70024610 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
70024561 CAATGCAAAC
70024571 AAGGGC-ACACGCCCGTGTGG
1 AAGGGCGACACGCCCGTGTGG
*
70024591 AAGGGCGACACGGCCGTGTG
1 AAGGGCGACACGCCCGTGTG
70024611 TCCTCTTAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.20, C:0.28, G:0.42, T:0.10
Consensus pattern (21 bp):
AAGGGCGACACGCCCGTGTGG
Found at i:70025997 original size:48 final size:48
Alignment explanation
Indices: 70025822--70026203 Score: 424
Period size: 48 Copynumber: 7.9 Consensus size: 48
70025812 AAAGGGTAAG
* * *
70025822 ATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATATCA
1 ATGCCGATGCCATGTCCCAAACATGGTCTTACACTAG--CTCACATATCA
* * * * * *
70025872 GTGCCGATGGCATGTTCCAAACATGGTCTTATATTAGCTCACATATCG
1 ATGCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCACATATCA
* ** * * *
70025920 AGGCAAATG-CATGTCCCAGACATGGTCTTACACTAGCTCTCATATTA
1 ATGCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCACATATCA
* * *
70025967 ATGCCGATGCCATGTTCCAAACATAGTCTTACACTAGCTCACATATCG
1 ATGCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCACATATCA
* * * * **
70026015 AGGTCGATGCCATGTCCCAGACATGGTCTTATACTAGCTCTTATATCA
1 ATGCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCACATATCA
* * *
70026063 ATGCCGATGCCATGTTCCAAACATAGTCTTACACTAGCTCACATATCG
1 ATGCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCACATATCA
* * *
70026111 AGGCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATATTA
1 ATGCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCACATATCA
*** * *
70026159 ATGTAAATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATA
1 ATGCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCACATA
70026204 ACCCTAATAT
Statistics
Matches: 271, Mismatches: 60, Indels: 4
0.81 0.18 0.01
Matches are distributed among these distances:
47 37 0.14
48 204 0.75
50 30 0.11
ACGTcount: A:0.27, C:0.27, G:0.17, T:0.29
Consensus pattern (48 bp):
ATGCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCACATATCA
Found at i:70026070 original size:96 final size:95
Alignment explanation
Indices: 70025826--70026203 Score: 551
Period size: 96 Copynumber: 3.9 Consensus size: 95
70025816 GGTAAGATGC
* * *
70025826 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATATCAGTGCCGATGGCATGTTCCA
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTC--ATATCAATGCCGATGCCATGTTCCA
* * *
70025891 AACATGGTCTTATATTAGCTCACATATCGAGG
64 AACATAGTCTTACACTAGCTCACATATCGAGG
* *
70025923 CAAATG-CATGTCCCAGACATGGTCTTACACTAGCTCTCATATTAATGCCGATGCCATGTTCCAA
1 C-GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCAATGCCGATGCCATGTTCCAA
70025987 ACATAGTCTTACACTAGCTCACATATCGAGG
65 ACATAGTCTTACACTAGCTCACATATCGAGG
* *
70026018 TCGATGCCATGTCCCAGACATGGTCTTATACTAGCTCTTATATCAATGCCGATGCCATGTTCCAA
1 -CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCAATGCCGATGCCATGTTCCAA
70026083 ACATAGTCTTACACTAGCTCACATATCGAGG
65 ACATAGTCTTACACTAGCTCACATATCGAGG
* * ***
70026114 CCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATATTAATGTAAATGCCATGTTCCAA
1 -CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCAATGCCGATGCCATGTTCCAA
* *
70026179 ACATGGTCTTACACTGGCTCACATA
65 ACATAGTCTTACACTAGCTCACATA
70026204 ACCCTAATAT
Statistics
Matches: 256, Mismatches: 22, Indels: 7
0.90 0.08 0.02
Matches are distributed among these distances:
95 54 0.21
96 167 0.65
97 32 0.12
98 3 0.01
ACGTcount: A:0.28, C:0.27, G:0.17, T:0.29
Consensus pattern (95 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCAATGCCGATGCCATGTTCCAAA
CATAGTCTTACACTAGCTCACATATCGAGG
Found at i:70033766 original size:48 final size:48
Alignment explanation
Indices: 70033714--70033937 Score: 254
Period size: 48 Copynumber: 4.7 Consensus size: 48
70033704 AATACTGATT
* *
70033714 CCATGTTCCAAACATAGTTTTACACTAGCTCATATATCGAGGTCGATG
1 CCATGTTCCAAACATGGTCTTACACTAGCTCATATATCGAGGTCGATG
* * * *
70033762 CCATGTCCCAGACATGGTCTTACACTAGCTCTTATATCGATG-CTGATG
1 CCATGTTCCAAACATGGTCTTACACTAGCTCATATATCGAGGTC-GATG
* * * *
70033810 CCATGTTCCAAACATGGTTTTACACTAGCTCACATATCGAGGCCGGTG
1 CCATGTTCCAAACATGGTCTTACACTAGCTCATATATCGAGGTCGATG
* * ** *
70033858 CCATGTCCCAGACATGGTCTTACACTAGCTC-TCATATTAATGTCGATG
1 CCATGTTCCAAACATGGTCTTACACTAGCTCAT-ATATCGAGGTCGATG
* * *
70033906 TCATGTTCCAAACATGGTCTTATACTGGCTCA
1 CCATGTTCCAAACATGGTCTTACACTAGCTCA
70033938 CATAACCCTA
Statistics
Matches: 145, Mismatches: 27, Indels: 7
0.81 0.15 0.04
Matches are distributed among these distances:
47 1 0.01
48 143 0.99
49 1 0.01
ACGTcount: A:0.25, C:0.26, G:0.18, T:0.31
Consensus pattern (48 bp):
CCATGTTCCAAACATGGTCTTACACTAGCTCATATATCGAGGTCGATG
Found at i:70033830 original size:96 final size:96
Alignment explanation
Indices: 70033661--70033941 Score: 375
Period size: 96 Copynumber: 2.9 Consensus size: 96
70033651 TAAGATGCCA
* * * * * *
70033661 ATGCCATCTCCCAGACATAGTCTTACACTGGTTCTCATATATCAATACTGATTCCATGTTCCAAA
1 ATGCCATGTCCCAGACATGGTCTTACACTAG--CTCTTATATCAATGCTGATGCCATGTTCCAAA
* * *
70033726 CATAGTTTTACACTAGCTCATATATCGAGGTCG
64 CATGGTTTTACACTAGCTCACATATCGAGGCCG
*
70033759 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTTATATCGATGCTGATGCCATGTTCCAAACA
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTTATATCAATGCTGATGCCATGTTCCAAACA
70033824 TGGTTTTACACTAGCTCACATATCGAGGCCG
66 TGGTTTTACACTAGCTCACATATCGAGGCCG
* * * *
70033855 GTGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATTAATG-TCGATGTCATGTTCCAAAC
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTTATATCAATGCT-GATGCCATGTTCCAAAC
* * *
70033919 ATGGTCTTATACTGGCTCACATA
65 ATGGTTTTACACTAGCTCACATA
70033942 ACCCTAGTAT
Statistics
Matches: 164, Mismatches: 18, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
95 1 0.01
96 135 0.82
98 28 0.17
ACGTcount: A:0.26, C:0.26, G:0.16, T:0.31
Consensus pattern (96 bp):
ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTTATATCAATGCTGATGCCATGTTCCAAACA
TGGTTTTACACTAGCTCACATATCGAGGCCG
Found at i:70035427 original size:19 final size:19
Alignment explanation
Indices: 70035405--70035449 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
70035395 AATTTTTTCT
70035405 ATATTTTAATGA-ATTTTAA
1 ATATTTT-ATGACATTTTAA
* *
70035424 ATATTTTTTGACATTTTTA
1 ATATTTTATGACATTTTAA
70035443 ATATTTT
1 ATATTTT
70035450 TTTACAAAGT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
18 3 0.13
19 20 0.87
ACGTcount: A:0.33, C:0.02, G:0.04, T:0.60
Consensus pattern (19 bp):
ATATTTTATGACATTTTAA
Found at i:70037659 original size:42 final size:41
Alignment explanation
Indices: 70037604--70037715 Score: 163
Period size: 42 Copynumber: 2.7 Consensus size: 41
70037594 TTAGGGTTAC
*
70037604 TGAGACTTTGTGTAAGACCATATCTGGGATATGACATC-ATTA
1 TGAGA-TTTGTGTAAGACCATATCTGGGATATAACATCGA-TA
70037646 TGAGATTTCGTGTAAGACCATATCTGGGATATAACATCGATA
1 TGAGATTT-GTGTAAGACCATATCTGGGATATAACATCGATA
*
70037688 TGAGATTTTGTGTAAGACCATAGCTGGG
1 TGAGA-TTTGTGTAAGACCATATCTGGG
70037716 CTATTGGCAT
Statistics
Matches: 65, Mismatches: 2, Indels: 6
0.89 0.03 0.08
Matches are distributed among these distances:
41 3 0.05
42 58 0.89
43 4 0.06
ACGTcount: A:0.30, C:0.13, G:0.24, T:0.32
Consensus pattern (41 bp):
TGAGATTTGTGTAAGACCATATCTGGGATATAACATCGATA
Found at i:70038056 original size:14 final size:14
Alignment explanation
Indices: 70038037--70038063 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
70038027 GAGTTTATAA
70038037 TGCTTATTATTTGT
1 TGCTTATTATTTGT
70038051 TGCTTATTATTTG
1 TGCTTATTATTTG
70038064 CATGGGAACT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.15, C:0.07, G:0.15, T:0.63
Consensus pattern (14 bp):
TGCTTATTATTTGT
Found at i:70039424 original size:20 final size:20
Alignment explanation
Indices: 70039386--70039425 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
70039376 TGAATTTTGA
*
70039386 GACTAAATTTTGGGAAGTTT
1 GACTAAATTTTAGGAAGTTT
70039406 GACTAAAATTTTAGG-AGTTT
1 GACT-AAATTTTAGGAAGTTT
70039426 AATAAGATTG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 9 0.50
21 9 0.50
ACGTcount: A:0.33, C:0.05, G:0.23, T:0.40
Consensus pattern (20 bp):
GACTAAATTTTAGGAAGTTT
Found at i:70040832 original size:9 final size:9
Alignment explanation
Indices: 70040818--70040927 Score: 73
Period size: 9 Copynumber: 12.6 Consensus size: 9
70040808 AAGCAGTAAC
70040818 AATAAGAAT
1 AATAAGAAT
70040827 AATAAGAAT
1 AATAAGAAT
*
70040836 AAGAAGAAT
1 AATAAGAAT
*
70040845 AAGAAGAAT
1 AATAAGAAT
* *
70040854 AATAACAAC
1 AATAAGAAT
*
70040863 AATAACAAT
1 AATAAGAAT
*
70040872 AACAAGAA-
1 AATAAGAAT
* *
70040880 GA-AA-AAG
1 AATAAGAAT
* *
70040887 AAGAACAAT
1 AATAAGAAT
* *
70040896 AACAATAAT
1 AATAAGAAT
* *
70040905 AACAACAAT
1 AATAAGAAT
70040914 AATAAGAAT
1 AATAAGAAT
70040923 AATAA
1 AATAA
70040928 TAATTATAAT
Statistics
Matches: 83, Mismatches: 15, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
6 2 0.02
7 3 0.04
8 3 0.04
9 75 0.90
ACGTcount: A:0.68, C:0.07, G:0.10, T:0.15
Consensus pattern (9 bp):
AATAAGAAT
Found at i:70040857 original size:3 final size:3
Alignment explanation
Indices: 70040818--70040938 Score: 53
Period size: 3 Copynumber: 40.3 Consensus size: 3
70040808 AAGCAGTAAC
* * * * * * * *
70040818 AAT AAG AAT AAT AAG AAT AAG AAG AAT AAG AAG AAT AAT AAC AAC AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * * * * * * * * * *
70040866 AAC AAT AAC AAG AAG AAA AAG AAG AAC AAT AAC AAT AAT AAC AAC AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* *
70040914 AAT AAG AAT AAT AAT AAT TAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT A
70040939 TATAGTTATT
Statistics
Matches: 92, Mismatches: 26, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
3 92 1.00
ACGTcount: A:0.67, C:0.07, G:0.09, T:0.17
Consensus pattern (3 bp):
AAT
Found at i:70045204 original size:21 final size:21
Alignment explanation
Indices: 70045178--70045219 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
70045168 TTTTAATGCC
70045178 ATTTGTATTTCTCTTGGATAA
1 ATTTGTATTTCTCTTGGATAA
70045199 ATTTGTATTTCTCTTGGATAA
1 ATTTGTATTTCTCTTGGATAA
70045220 CACAGAATAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.24, C:0.10, G:0.14, T:0.52
Consensus pattern (21 bp):
ATTTGTATTTCTCTTGGATAA
Found at i:70047720 original size:44 final size:44
Alignment explanation
Indices: 70047661--70047747 Score: 147
Period size: 44 Copynumber: 2.0 Consensus size: 44
70047651 AGTTTATAAG
* *
70047661 TTAGATTTCTGAAGTCTCTTTTGTTTATGTCATTTTTAATTCTA
1 TTAGATTTCCGAAGTCTCTTTTGTTTAAGTCATTTTTAATTCTA
*
70047705 TTAGTTTTCCGAAGTCTCTTTTGTTTAAGTCATTTTTAATTCT
1 TTAGATTTCCGAAGTCTCTTTTGTTTAAGTCATTTTTAATTCT
70047748 TTATTTATAA
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
44 40 1.00
ACGTcount: A:0.20, C:0.13, G:0.11, T:0.56
Consensus pattern (44 bp):
TTAGATTTCCGAAGTCTCTTTTGTTTAAGTCATTTTTAATTCTA
Found at i:70050066 original size:42 final size:41
Alignment explanation
Indices: 70049946--70050112 Score: 190
Period size: 42 Copynumber: 4.0 Consensus size: 41
70049936 AGTATCGTTC
** * *
70049946 CAATGCCATATCCCAGATACGGTCTCACATGGAATCTCATAT
1 CAATGCCATATCCCAGATATAGTCTTACA-CGAATCTCATAT
* * * *
70049988 CGATGCCAATAGCCTAGCTATAGTCTTACACGAAGTCTCATAT
1 CAATGCC-ATATCCCAGATATAGTCTTACACGAA-TCTCATAT
*
70050031 CAATGCCATATCCCAGATATGGTCTTACACGAAGTCTCATAT
1 CAATGCCATATCCCAGATATAGTCTTACACGAA-TCTCATAT
* *
70050073 CGATGCCATATCCTAGATATAGTCTTACACGTAATCTCAT
1 CAATGCCATATCCCAGATATAGTCTTACACG-AATCTCAT
70050113 TAACCCTAAT
Statistics
Matches: 106, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
42 74 0.70
43 32 0.30
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.29
Consensus pattern (41 bp):
CAATGCCATATCCCAGATATAGTCTTACACGAATCTCATAT
Found at i:70050498 original size:29 final size:29
Alignment explanation
Indices: 70050436--70050498 Score: 67
Period size: 30 Copynumber: 2.2 Consensus size: 29
70050426 ATATTATGAC
* *
70050436 AAAA-TTATATTTTTGCCCCTAAAGTTTCA
1 AAAATTTACATTTTTGCCCCTAAAG-CTCA
*
70050465 CAAATTTACATTTTTGCCCCTAAA-CTCGA
1 AAAATTTACATTTTTGCCCCTAAAGCTC-A
70050494 AAAAT
1 AAAAT
70050499 GAAATTTATT
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
28 2 0.07
29 8 0.29
30 18 0.64
ACGTcount: A:0.37, C:0.21, G:0.06, T:0.37
Consensus pattern (29 bp):
AAAATTTACATTTTTGCCCCTAAAGCTCA
Found at i:70052982 original size:39 final size:39
Alignment explanation
Indices: 70052938--70053015 Score: 156
Period size: 39 Copynumber: 2.0 Consensus size: 39
70052928 ATATATGGTG
70052938 ATTATATCCGGACTTAAGGTCCGTAGGCTATATGCGGGA
1 ATTATATCCGGACTTAAGGTCCGTAGGCTATATGCGGGA
70052977 ATTATATCCGGACTTAAGGTCCGTAGGCTATATGCGGGA
1 ATTATATCCGGACTTAAGGTCCGTAGGCTATATGCGGGA
70053016 GGCTATATGC
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.26, C:0.18, G:0.28, T:0.28
Consensus pattern (39 bp):
ATTATATCCGGACTTAAGGTCCGTAGGCTATATGCGGGA
Found at i:70053025 original size:53 final size:53
Alignment explanation
Indices: 70052962--70053068 Score: 196
Period size: 53 Copynumber: 2.0 Consensus size: 53
70052952 TAAGGTCCGT
* *
70052962 AGGCTATATGCGGGAATTATATCCGGACTTAAGGTCCGTAGGCTATATGCGGG
1 AGGCTATATGCAGGAATTATATCCGGACTTAAAGTCCGTAGGCTATATGCGGG
70053015 AGGCTATATGCAGGAATTATATCCGGACTTAAAGTCCGTAGGCTATATGCGGG
1 AGGCTATATGCAGGAATTATATCCGGACTTAAAGTCCGTAGGCTATATGCGGG
70053068 A
1 A
70053069 ATCATATTCG
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
53 52 1.00
ACGTcount: A:0.27, C:0.17, G:0.30, T:0.26
Consensus pattern (53 bp):
AGGCTATATGCAGGAATTATATCCGGACTTAAAGTCCGTAGGCTATATGCGGG
Found at i:70053058 original size:39 final size:39
Alignment explanation
Indices: 70053015--70053118 Score: 109
Period size: 39 Copynumber: 2.7 Consensus size: 39
70053005 TATATGCGGG
*
70053015 AGGCTATATGCAGGAATTATATCCGGACTTAAAGTCCGT
1 AGGCTATATGCAGGAATTATATCCGGACTTAAAGTCCGC
* * * * * * *
70053054 AGGCTATATGCGGGAATCATATTCGAACTTCAGGTTCGC
1 AGGCTATATGCAGGAATTATATCCGGACTTAAAGTCCGC
* * *
70053093 CGGCTATGTGCTGGAATTATATCCGG
1 AGGCTATATGCAGGAATTATATCCGG
70053119 GCTAATAGTC
Statistics
Matches: 51, Mismatches: 14, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
39 51 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.29
Consensus pattern (39 bp):
AGGCTATATGCAGGAATTATATCCGGACTTAAAGTCCGC
Found at i:70056730 original size:42 final size:43
Alignment explanation
Indices: 70056622--70056742 Score: 111
Period size: 42 Copynumber: 2.8 Consensus size: 43
70056612 AACAGGTACA
* * * * *
70056622 ATGCCGACGTCCTGGACGTGGTCTTACATGTAATTCAATGTCG
1 ATGCCGATGTCCTAGACATGGTCTTACATGTAAATCAATGACG
** * *
70056665 ATGCCTCTGTCCTAGATAAGGTCTTACATG-AAATCAGAT-ACG
1 ATGCCGATGTCCTAGACATGGTCTTACATGTAAATCA-ATGACG
* * *
70056707 ATGCCGATGTCCCAGACATGGTCTTATACGTAAATC
1 ATGCCGATGTCCTAGACATGGTCTTACATGTAAATC
70056743 TCAATCGAGG
Statistics
Matches: 60, Mismatches: 16, Indels: 4
0.75 0.20 0.05
Matches are distributed among these distances:
42 30 0.50
43 30 0.50
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.29
Consensus pattern (43 bp):
ATGCCGATGTCCTAGACATGGTCTTACATGTAAATCAATGACG
Found at i:70068907 original size:37 final size:37
Alignment explanation
Indices: 70068864--70068964 Score: 132
Period size: 37 Copynumber: 2.7 Consensus size: 37
70068854 ACGTATCACA
*
70068864 ATGCCATAGCCCTGCTATGGTCTTACATGTCATTACG
1 ATGCCATAGACCTGCTATGGTCTTACATGTCATTACG
* *
70068901 ATGCCATA-ACCTAGCTATGGTCTTACATGTTATTATG
1 ATGCCATAGACCT-GCTATGGTCTTACATGTCATTACG
* **
70068938 ATGCCATAGTCCAACTATGGTCTTACA
1 ATGCCATAGACCTGCTATGGTCTTACA
70068965 CATGCACACA
Statistics
Matches: 56, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
36 3 0.05
37 51 0.91
38 2 0.04
ACGTcount: A:0.26, C:0.24, G:0.17, T:0.34
Consensus pattern (37 bp):
ATGCCATAGACCTGCTATGGTCTTACATGTCATTACG
Found at i:70069243 original size:20 final size:21
Alignment explanation
Indices: 70069218--70069256 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
70069208 ATTATCTCTA
70069218 ATTTAACAAT-TAAACATAAG
1 ATTTAACAATATAAACATAAG
*
70069238 ATTTAACCATATAAACATA
1 ATTTAACAATATAAACATA
70069257 CTGATTACAC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 9 0.53
21 8 0.47
ACGTcount: A:0.54, C:0.13, G:0.03, T:0.31
Consensus pattern (21 bp):
ATTTAACAATATAAACATAAG
Found at i:70071961 original size:27 final size:27
Alignment explanation
Indices: 70071927--70071995 Score: 95
Period size: 27 Copynumber: 2.6 Consensus size: 27
70071917 TTTTGCCCTT
*
70071927 ATAAGGTAAAATGATTGA-AATACCCCC
1 ATAAGGTAAAATGACT-ATAATACCCCC
* *
70071954 ATAGGGTAAAATGACTATAATACCCCT
1 ATAAGGTAAAATGACTATAATACCCCC
70071981 ATAAGGTAAAATGAC
1 ATAAGGTAAAATGAC
70071996 AGATTTGTAC
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
26 1 0.03
27 36 0.97
ACGTcount: A:0.45, C:0.16, G:0.16, T:0.23
Consensus pattern (27 bp):
ATAAGGTAAAATGACTATAATACCCCC
Found at i:70078179 original size:27 final size:26
Alignment explanation
Indices: 70078120--70078206 Score: 102
Period size: 27 Copynumber: 3.3 Consensus size: 26
70078110 TGGAGGAAGC
*
70078120 GTTCTGGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTCTGCCAC-AATATCT
*
70078147 ATTCTGGTGGCTCTGCCACAATATCT
1 GTTCTGGTGGCTCTGCCACAATATCT
* * * *
70078173 GTATCTGTTGACTCTGTCATAATATCT
1 GT-TCTGGTGGCTCTGCCACAATATCT
70078200 GTTCTGG
1 GTTCTGG
70078207 CAGCCATGCT
Statistics
Matches: 51, Mismatches: 8, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
26 12 0.24
27 39 0.76
ACGTcount: A:0.20, C:0.22, G:0.21, T:0.38
Consensus pattern (26 bp):
GTTCTGGTGGCTCTGCCACAATATCT
Found at i:70086091 original size:12 final size:12
Alignment explanation
Indices: 70086074--70086109 Score: 54
Period size: 12 Copynumber: 2.9 Consensus size: 12
70086064 ATTTAATAAA
70086074 TAAAAATAAAATC
1 TAAAAATAAAA-C
*
70086087 TAAAACTAAAAC
1 TAAAAATAAAAC
70086099 TAAAAATAAAA
1 TAAAAATAAAA
70086110 AACATATAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
12 11 0.52
13 10 0.48
ACGTcount: A:0.72, C:0.08, G:0.00, T:0.19
Consensus pattern (12 bp):
TAAAAATAAAAC
Found at i:70086144 original size:9 final size:9
Alignment explanation
Indices: 70086130--70086206 Score: 109
Period size: 9 Copynumber: 8.6 Consensus size: 9
70086120 TGTATACAAA
70086130 TAATTCGGT
1 TAATTCGGT
*
70086139 TAATTCAGT
1 TAATTCGGT
*
70086148 TAATTCGGG
1 TAATTCGGT
*
70086157 TAATTCGGG
1 TAATTCGGT
*
70086166 TAATTCGGG
1 TAATTCGGT
70086175 TAATTCGGT
1 TAATTCGGT
*
70086184 TAATTCGAT
1 TAATTCGGT
70086193 TAATTCGGT
1 TAATTCGGT
70086202 TAATT
1 TAATT
70086207 TTATACTTAT
Statistics
Matches: 62, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 62 1.00
ACGTcount: A:0.26, C:0.10, G:0.22, T:0.42
Consensus pattern (9 bp):
TAATTCGGT
Found at i:70091063 original size:12 final size:12
Alignment explanation
Indices: 70091046--70091074 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
70091036 TTAAATTATA
70091046 CAATTTCTAATT
1 CAATTTCTAATT
70091058 CAATTTCTAATT
1 CAATTTCTAATT
70091070 CAATT
1 CAATT
70091075 ATTATACATA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.34, C:0.17, G:0.00, T:0.48
Consensus pattern (12 bp):
CAATTTCTAATT
Found at i:70101464 original size:93 final size:92
Alignment explanation
Indices: 70101306--70101474 Score: 275
Period size: 93 Copynumber: 1.8 Consensus size: 92
70101296 GGATGTTTGG
* * *
70101306 GCATCCGAACTCGTTGAGTTGAGTCTAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGTT
1 GCATCCGAACTCGTTGAGTTGAGTCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGTT
70101371 GAGTCCGAGTTTGAGAGATGTAACTAA
66 GAGTCCGAGTTTGAGAGATGTAACTAA
* *
70101398 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGT-CGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
*
70101463 TGAGTTCGAGTT
65 TGAGTCCGAGTT
70101475 CACTTATGGG
Statistics
Matches: 70, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
92 23 0.33
93 47 0.67
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.30
Consensus pattern (92 bp):
GCATCCGAACTCGTTGAGTTGAGTCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGTT
GAGTCCGAGTTTGAGAGATGTAACTAA
Found at i:70101473 original size:46 final size:45
Alignment explanation
Indices: 70101310--70101483 Score: 181
Period size: 46 Copynumber: 3.8 Consensus size: 45
70101300 GTTTGGGCAT
* *
70101310 CCGAACTCGTTGAGTTGAGT-CTAGTTCACTTATGGATGCGAATGT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-GC
* *** * * *
70101355 CCGAACTCGTTGAGTTGAGTCCGAGTTTGAGAGATGTA-ACTAAGC
1 CCGAACTCGTTGAGTTGAGTCCGAG-TTCACTTATGGATGCGAAGC
*
70101400 ATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-GC
* *
70101448 CCGAGCTCGTTGAGTTGAGTTCGAGTTCACTTATGG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
70101484 GCGGGTTACA
Statistics
Matches: 105, Mismatches: 18, Indels: 11
0.78 0.13 0.08
Matches are distributed among these distances:
45 21 0.20
46 48 0.46
47 34 0.32
48 2 0.02
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.30
Consensus pattern (45 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAGC
Found at i:70103909 original size:30 final size:30
Alignment explanation
Indices: 70103863--70103925 Score: 92
Period size: 30 Copynumber: 2.1 Consensus size: 30
70103853 ATCAAATTTT
*
70103863 AAGTATAGGGGTAAAATGGTCA-TTTAGCTA
1 AAGTATAGGGGCAAAATGGTCATTTTA-CTA
*
70103893 AAGTCTAGGGGCAAAATGGTCATTTTACTA
1 AAGTATAGGGGCAAAATGGTCATTTTACTA
70103923 AAG
1 AAG
70103926 ATGTAAATTT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
30 26 0.87
31 4 0.13
ACGTcount: A:0.37, C:0.10, G:0.25, T:0.29
Consensus pattern (30 bp):
AAGTATAGGGGCAAAATGGTCATTTTACTA
Found at i:70104334 original size:47 final size:46
Alignment explanation
Indices: 70104260--70104581 Score: 199
Period size: 47 Copynumber: 6.8 Consensus size: 46
70104250 TTAGGTTATG
* * *
70104260 TGAGAGCCAGTATAAGACCGTGTCTGGGACATGGCATCGGCATTGAGA
1 TGAGAGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCATTGAGA
* * * *
70104308 CGGGGGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCACATT---A
1 TGAGAGCTAGTGTAAGACATGTCTGGGACATGCATC-G--GCATTGAGA
* * * * *
70104354 TGATAGCCAGTGTAAGACCATATCTGGGACATGGCATCGGCGTAGAGA
1 TGAGAGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCATTGAGA
* * * * *
70104402 TGAGTGATAGTGTAAGACATGTCTGGGACATGCATCAGCCTCGATGA
1 TGAGAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCATTGA-GA
* * * * * *
70104449 TGATAGCCAGTGTAAGACGTGTCTGGGACATGTATCGGC--TAAGTT
1 TGAGAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCATTGAG-A
* * * * *
70104494 TCA-TGCTAGTGTAAGACATGTTTGGGACATGCATCAGCACGTAT-ACA
1 TGAGAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCA--T-TGAGA
* *
70104541 CGAGAGCTAGTGTAAGACCATGTCTAGGACATGGCATCGGC
1 TGAGAGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC
70104582 CTCGATGGAG
Statistics
Matches: 207, Mismatches: 49, Indels: 34
0.71 0.17 0.12
Matches are distributed among these distances:
44 30 0.14
45 5 0.02
46 28 0.14
47 76 0.37
48 44 0.21
49 17 0.08
50 7 0.03
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.24
Consensus pattern (46 bp):
TGAGAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCATTGAGA
Found at i:70104425 original size:94 final size:94
Alignment explanation
Indices: 70104264--70104581 Score: 369
Period size: 94 Copynumber: 3.4 Consensus size: 94
70104254 GTTATGTGAG
* * * * * *
70104264 AGCCAGTATAAGACCGTGTCTGGGACATGGCATCGGCATTGAGACGGGGGCTAGTGTAAGACATG
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC-TAGAGATGAGTGCTAGTGTAAGACATG
*
70104329 TCTGGGACATGCATCAGCCAC-ATTATGAT
65 TCTGGGACATGCATCAGCCACGATCATGAT
* *
70104358 AGCCAGTGTAAGACCATATCTGGGACATGGCATCGGCGTAGAGATGAGTGATAGTGTAAGACATG
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC-TAGAGATGAGTGCTAGTGTAAGACATG
* *
70104423 TCTGGGACATGCATCAGCCTCGATGATGAT
65 TCTGGGACATGCATCAGCCACGATCATGAT
* * * *
70104453 AGCCAGTGTAAGA-CGTGTCTGGGACAT-GTATCGGCTA-AGTTTCA-TGCTAGTGTAAGACATG
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCTAGAG-ATGAGTGCTAGTGTAAGACATG
* * *
70104514 TTTGGGACATGCATCAG-CACGTATACACGAG
65 TCTGGGACATGCATCAGCCACG-AT-CATGAT
* *
70104545 AGCTAGTGTAAGACCATGTCTAGGACATGGCATCGGC
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC
70104582 CTCGATGGAG
Statistics
Matches: 192, Mismatches: 26, Indels: 12
0.83 0.11 0.05
Matches are distributed among these distances:
90 3 0.02
91 36 0.19
92 19 0.10
93 19 0.10
94 95 0.49
95 20 0.10
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.24
Consensus pattern (94 bp):
AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCTAGAGATGAGTGCTAGTGTAAGACATGT
CTGGGACATGCATCAGCCACGATCATGAT
Done.