Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100714657
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 3970000 characters in sequence are not A, C, G, or T
File 222 of 318
Found at i:70452035 original size:43 final size:43
Alignment explanation
Indices: 70451969--70452111 Score: 178
Period size: 43 Copynumber: 3.3 Consensus size: 43
70451959 CTTTGCTCGA
** * * *
70451969 ATCACCGGCATTAAGCCTTCTAGGCACGAAGACCCAAATACAC
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
*
70452012 ATCACCGGCACGAAGCCTGCTAGGAACGAAGGCCCGAATACAC
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
* * * * * *
70452055 ATCACCAGTACAAAGCCTGCTAGGCATGAAGGCCTGATTACAC
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
70452098 ATCACCGGCACGAA
1 ATCACCGGCACGAA
70452112 TGCCCTTCAG
Statistics
Matches: 84, Mismatches: 16, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
43 84 1.00
ACGTcount: A:0.34, C:0.31, G:0.21, T:0.14
Consensus pattern (43 bp):
ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
Found at i:70452165 original size:40 final size:40
Alignment explanation
Indices: 70452100--70452260 Score: 286
Period size: 40 Copynumber: 4.0 Consensus size: 40
70452090 GATTACACAT
* * * *
70452100 CACCGGCACGAATGCCCTTCAGGACTTAGCCCGGATGTAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
70452140 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
70452180 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
70452220 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
70452260 C
1 C
70452261 TCTCAATTCT
Statistics
Matches: 117, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 117 1.00
ACGTcount: A:0.27, C:0.31, G:0.23, T:0.19
Consensus pattern (40 bp):
CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
Found at i:70464343 original size:49 final size:49
Alignment explanation
Indices: 70464281--70464804 Score: 847
Period size: 47 Copynumber: 10.9 Consensus size: 49
70464271 TAGTATGGCG
*
70464281 TAATGGCTGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
70464330 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
70464379 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
*
70464426 TAATAGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
* *
70464475 TAATGGCCGATGTGATGAATGTGAAACTGTATATATA--TGATAGGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
*
70464522 TAATGGCCGATGTGATGAATGTGAAAGTGTATATACATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
70464571 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
70464618 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
*
70464667 TAATGGCCGATGTGATGAATGTGATAGTG--TATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
* *
70464714 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGACAGGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
* * * * *
70464761 GAGTGGCCAACGTGATGGATGTGAAAGTGTATA-A-ATGTGATAAG
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAG
70464805 TCCCGAAGGG
Statistics
Matches: 447, Mismatches: 20, Indels: 18
0.92 0.04 0.04
Matches are distributed among these distances:
47 230 0.51
48 1 0.00
49 216 0.48
ACGTcount: A:0.32, C:0.09, G:0.29, T:0.30
Consensus pattern (49 bp):
TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
Found at i:70464447 original size:96 final size:96
Alignment explanation
Indices: 70464281--70464804 Score: 881
Period size: 96 Copynumber: 5.5 Consensus size: 96
70464271 TAGTATGGCG
*
70464281 TAATGGCTGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
1 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGAT
70464346 GAATGTGAAAGTGTATATATATGTGATAAGGCC
64 GAATGTGAAAGTGTATATATATGTGATAAGGCC
*
70464379 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
70464444 ATGTGAAAGTGTATATATATGTGATAAGGCC
66 ATGTGAAAGTGTATATATATGTGATAAGGCC
* * *
70464475 TAATGGCCGATGTGATGAATGTGAAACTGTATATATATGATAGGGCCTAATGGCCGATGTGATGA
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
70464540 ATGTGAAAGTGTATATACATGTGATAAGGCC
66 ATGTGAAAGTGTATATATATGTGATAAGGCC
70464571 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
70464636 ATGTGAAAGTGTATATATATGTGATAAGGCC
66 ATGTGAAAGTGTATATATATGTGATAAGGCC
*
70464667 TAATGGCCGATGTGATGAATGTGATAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
70464732 ATGTGAAAGTG--TATATATGTGACAGGGCC
66 ATGTGAAAGTGTATATATATGTGATAAGGCC
* * * * * *
70464761 GAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
70464805 TCCCGAAGGG
Statistics
Matches: 405, Mismatches: 21, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
94 53 0.13
96 324 0.80
98 28 0.07
ACGTcount: A:0.32, C:0.09, G:0.29, T:0.30
Consensus pattern (96 bp):
TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
ATGTGAAAGTGTATATATATGTGATAAGGCC
Found at i:70466541 original size:40 final size:40
Alignment explanation
Indices: 70466187--70466529 Score: 479
Period size: 40 Copynumber: 8.6 Consensus size: 40
70466177 GAGTGAAATG
* **
70466187 TCCGGGCTAAATGTCGAAGAGCATTCGTGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
* **
70466227 TCCGGACTAAGTTTCGAAGAGCATTCGTGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
* *
70466267 TCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
* *
70466307 TCCGGTCTAAGTCCCGAAGAGCATTCCTGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
*
70466347 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
*
70466387 TCCGGGCTAAGTCTCGAAGAGCATTCGTGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
* * *
70466427 TCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
* ** * * * *
70466467 TCCGTGCTAAACCCCGAAGAGCATTTGTGCTGGTGTTATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
*
70466507 TCCGGGCTAGGTCCCGAAGAGCA
1 TCCGGGCTAAGTCCCGAAGAGCA
70466530 ATCATGCTGG
Statistics
Matches: 276, Mismatches: 27, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 276 1.00
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
Found at i:70469412 original size:49 final size:49
Alignment explanation
Indices: 70469350--70469971 Score: 1052
Period size: 49 Copynumber: 12.9 Consensus size: 49
70469340 TAGTATGGCG
* *
70469350 TAATGGCTGATGTGATGAATGTGAAAATGTATATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
70469399 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
70469448 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
*
70469495 TAATAGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
70469544 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
* *
70469593 TAATGGCCGAAGTGATGAATGTGAAACTG--TATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
70469640 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
70469689 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
70469736 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
70469785 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
70469834 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
* *
70469881 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGACAGGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
* * * * *
70469928 GAGTGGCCAACGTGATGGATGTGAAAGTGTATA-A-ATGTGATAAG
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAG
70469972 TCCCGAAGGG
Statistics
Matches: 548, Mismatches: 17, Indels: 18
0.94 0.03 0.03
Matches are distributed among these distances:
47 233 0.43
48 1 0.00
49 314 0.57
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (49 bp):
TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
Found at i:70469516 original size:96 final size:94
Alignment explanation
Indices: 70469350--70469971 Score: 1001
Period size: 96 Copynumber: 6.5 Consensus size: 94
70469340 TAGTATGGCG
* *
70469350 TAATGGCTGATGTGATGAATGTGAAAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
1 TAATGGCCGATGTGATGAATGTG-AAA-GTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
70469415 GAATGTGAAAGTGTATATATATGTGATAAGGCC
64 GAATGTGAAAGTG--TATATATGTGATAAGGCC
*
70469448 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
70469513 ATGTGAAAGTGTATATATATGTGATAAGGCC
66 ATGTGAAAGTG--TATATATGTGATAAGGCC
*
70469544 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGAAGTGAT
1 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGAT
*
70469609 GAATGTGAAACTGTATATATGTGATAAGGCC
64 GAATGTGAAAGTGTATATATGTGATAAGGCC
70469640 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
1 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGAT
70469705 GAATGTGAAAGTGTATATATGTGATAAGGCC
64 GAATGTGAAAGTGTATATATGTGATAAGGCC
70469736 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
1 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGAT
70469801 GAATGTGAAAGTGTATATATATGTGATAAGGCC
64 GAATGTGAAAGTG--TATATATGTGATAAGGCC
70469834 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
70469899 ATGTGAAAGTGTATATATGTGACAGGGCC
66 ATGTGAAAGTGTATATATGTGATAAGGCC
* * * * * *
70469928 GAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
70469972 TCCCGAAGGG
Statistics
Matches: 504, Mismatches: 16, Indels: 12
0.95 0.03 0.02
Matches are distributed among these distances:
94 54 0.11
96 334 0.66
97 3 0.01
98 113 0.22
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (94 bp):
TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
ATGTGAAAGTGTATATATGTGATAAGGCC
Found at i:70469533 original size:145 final size:143
Alignment explanation
Indices: 70469350--70469971 Score: 1068
Period size: 145 Copynumber: 4.3 Consensus size: 143
70469340 TAGTATGGCG
* *
70469350 TAATGGCTGATGTGATGAATGTGAAAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
70469415 GAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
66 GAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
70469480 ATATGTGATAAGGCC
129 ATATGTGATAAGGCC
*
70469495 TAATAGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
* *
70469560 GAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGAAGTGATGAATGTGAAACTGTAT
66 GAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
70469625 ATATGTGATAAGGCC
129 ATATGTGATAAGGCC
70469640 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
70469705 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
66 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TAT
70469770 ATATGTGATAAGGCC
129 ATATGTGATAAGGCC
70469785 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
70469850 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
66 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
* *
70469915 ATGTGACAGGGCC
131 ATGTGATAAGGCC
* * * * *
70469928 GAGTGGCCAACGTGATGGATGTGAAAGTGTATA-A-ATGTGATAAG
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAG
70469972 TCCCGAAGGG
Statistics
Matches: 460, Mismatches: 15, Indels: 8
0.95 0.03 0.02
Matches are distributed among these distances:
141 10 0.02
142 1 0.00
143 89 0.19
145 360 0.78
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (143 bp):
TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
ATGTGATAAGGCC
Found at i:70485248 original size:54 final size:54
Alignment explanation
Indices: 70485058--70485325 Score: 313
Period size: 54 Copynumber: 5.0 Consensus size: 54
70485048 TTTCCTTTTT
* * * * * *
70485058 GAACTTACCATTGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTATA
1 GAACTTACCAATGCCATGCCTTGGCATGGTCTTACATGATATCCTTACCTTATA
* ** * *
70485112 -AACTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGACCCTTTCCTTATA
1 GAACTTACCAATGCCATGCCTTGGCATGGTCTTACATGATATCCTTACCTTATA
* * * * * *
70485165 TTAACTTATCAATTCCATGTCTTGACATGGTCTTACATGATTTCCTTACCTTATA
1 -GAACTTACCAATGCCATGCCTTGGCATGGTCTTACATGATATCCTTACCTTATA
* * * *
70485220 GAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATTTTCTTGCCTTATA
1 GAACTTACCAATGCCATGCCTTGGCATGGTCTTACATGATATCCTTACCTTATA
* *
70485274 GAACTTAACAATGCCATGCCTTGGCATGGTCTTACATGATATCCTTATCTTA
1 GAACTTACCAATGCCATGCCTTGGCATGGTCTTACATGATATCCTTACCTTA
70485326 CCAAATGCCA
Statistics
Matches: 183, Mismatches: 29, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
53 45 0.25
54 95 0.52
55 43 0.23
ACGTcount: A:0.24, C:0.24, G:0.15, T:0.37
Consensus pattern (54 bp):
GAACTTACCAATGCCATGCCTTGGCATGGTCTTACATGATATCCTTACCTTATA
Found at i:70485448 original size:47 final size:46
Alignment explanation
Indices: 70485282--70485506 Score: 177
Period size: 47 Copynumber: 4.8 Consensus size: 46
70485272 TAGAACTTAA
* * * * * *
70485282 CAATGCCATGCCTTGGCATGGTCTTACATGATATCCTTATC-TTAC
1 CAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTGTCAATGC
** *
70485327 CAAATGCCATGT-TCCAATCATGGTCTTACATGGTATCCTTGTCTTAGTGC
1 C-AATGCCATGTCT-TGA-CATGGTCTTACATGGTATCCTTGTC--AATGC
** ** *
70485377 CAATGCCACATCTTGATGTGGTCTTACATGGAATCCTTAGTCAATGC
1 CAATGCCATGTCTTGACATGGTCTTACATGGTATCCTT-GTCAATGC
* * * * ** *
70485424 CGATGCCATGTCTTGACATGGTCTTATAAGGGATCCTTG-CCTTAC
1 CAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTGTCAATGC
*
70485469 CAATGCTATGTCTTGACATGGTCTTACATGGTATCCTT
1 CAATGCCATGTCTTGACATGGTCTTACATGGTATCCTT
70485507 AACCGTCAAT
Statistics
Matches: 140, Mismatches: 32, Indels: 16
0.74 0.17 0.09
Matches are distributed among these distances:
45 38 0.27
46 10 0.07
47 57 0.41
48 19 0.14
49 12 0.09
50 4 0.03
ACGTcount: A:0.22, C:0.24, G:0.19, T:0.35
Consensus pattern (46 bp):
CAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTGTCAATGC
Found at i:70485595 original size:44 final size:44
Alignment explanation
Indices: 70485512--70485595 Score: 105
Period size: 44 Copynumber: 1.9 Consensus size: 44
70485502 TCCTTAACCG
* * *
70485512 TCAATTCCTCTTTAAATGCCATGTTATAAACATGAACTTTTCCA
1 TCAATTCCTCCTTAAATGCCATGGTACAAACATGAACTTTTCCA
* * * *
70485556 TCAATTCTTCCTTAATTGCCATGGTACAACCATGGACTTT
1 TCAATTCCTCCTTAAATGCCATGGTACAAACATGAACTTT
70485596 GAGATATCAA
Statistics
Matches: 33, Mismatches: 7, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
44 33 1.00
ACGTcount: A:0.29, C:0.24, G:0.10, T:0.38
Consensus pattern (44 bp):
TCAATTCCTCCTTAAATGCCATGGTACAAACATGAACTTTTCCA
Found at i:70486172 original size:30 final size:30
Alignment explanation
Indices: 70486133--70486193 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
70486123 TCCCTAAATC
*
70486133 AAACTTTTGCAAAATTACAATTTTGCCCCT
1 AAACCTTTGCAAAATTACAATTTTGCCCCT
** *
70486163 AAACCTTTGCAAAATTATGATTTTGTCCCT
1 AAACCTTTGCAAAATTACAATTTTGCCCCT
70486193 A
1 A
70486194 GGCTCGGAAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.33, C:0.21, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACCTTTGCAAAATTACAATTTTGCCCCT
Found at i:70502752 original size:42 final size:41
Alignment explanation
Indices: 70502705--70502824 Score: 132
Period size: 43 Copynumber: 2.8 Consensus size: 41
70502695 TACCGTACCA
* *
70502705 ATGCCATATCCCAAATATGGTCTTACATGTAATCTCGTATCG
1 ATGCCATATCCCAGATATGGTCTTACA-GTAATCTCATATCG
* * * **
70502747 ATGCCAATAGCCCAGTTATGGTCTTATACAAAGTCTCATATCG
1 ATGCC-ATATCCCAGATATGGTCTTACAGTAA-TCTCATATCG
*
70502790 ATGCCATATCCCAGGTATGGTCTTACACGTAATCT
1 ATGCCATATCCCAGATATGGTCTTACA-GTAATCT
70502825 TAGTAATCCT
Statistics
Matches: 63, Mismatches: 12, Indels: 6
0.78 0.15 0.07
Matches are distributed among these distances:
42 29 0.46
43 34 0.54
ACGTcount: A:0.28, C:0.24, G:0.16, T:0.32
Consensus pattern (41 bp):
ATGCCATATCCCAGATATGGTCTTACAGTAATCTCATATCG
Found at i:70508271 original size:17 final size:17
Alignment explanation
Indices: 70508249--70508315 Score: 52
Period size: 17 Copynumber: 3.9 Consensus size: 17
70508239 CATCATTAGC
70508249 CACATT-ACCAAACATTT
1 CACATTCACCAAACA-TT
70508266 CACATTCATGCCATAA-A-T
1 CACATTCA--CCA-AACATT
*
70508284 CACATT-TCCAAACAATT
1 CACATTCACCAAAC-ATT
70508301 CACATTCACCAAACA
1 CACATTCACCAAACA
70508316 ACCATGATCA
Statistics
Matches: 40, Mismatches: 2, Indels: 16
0.69 0.03 0.28
Matches are distributed among these distances:
14 2 0.05
15 3 0.08
16 1 0.03
17 14 0.35
18 14 0.35
20 4 0.10
21 2 0.05
ACGTcount: A:0.42, C:0.31, G:0.01, T:0.25
Consensus pattern (17 bp):
CACATTCACCAAACATT
Found at i:70508314 original size:18 final size:17
Alignment explanation
Indices: 70508249--70508316 Score: 59
Period size: 18 Copynumber: 3.9 Consensus size: 17
70508239 CATCATTAGC
*
70508249 CACATTACCAAACATTT
1 CACATTACCAAACAATT
*
70508266 CACATTCATGCCATA-AA-T
1 CACATT-A--CCAAACAATT
*
70508284 CACATTTCCAAACAATT
1 CACATTACCAAACAATT
70508301 CACATTCACCAAACAA
1 CACATT-ACCAAACAA
70508317 CCATGATCAC
Statistics
Matches: 40, Mismatches: 5, Indels: 11
0.71 0.09 0.20
Matches are distributed among these distances:
15 4 0.10
16 2 0.05
17 13 0.32
18 16 0.40
19 1 0.03
20 4 0.10
ACGTcount: A:0.43, C:0.31, G:0.01, T:0.25
Consensus pattern (17 bp):
CACATTACCAAACAATT
Found at i:70509864 original size:43 final size:42
Alignment explanation
Indices: 70509798--70509954 Score: 158
Period size: 43 Copynumber: 3.7 Consensus size: 42
70509788 AGCTCATACA
* * * *
70509798 ATGCCAACATCCCAAACGTGGTCTTACATGTAATCAATTATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACAAGTAATCAAGTA-CG
* **
70509841 ATGCC-ACTGTTCCAGACAG-GGTCTTACAAAAAATCAAGTACG
1 ATGCCAAC-GTCCCAGAC-GTGGTCTTACAAGTAATCAAGTACG
* *
70509883 ATGCCAACGTCCCAGACGTGGTCTTACACGTAAATCATAAGT-CA
1 ATGCCAACGTCCCAGACGTGGTCTTACAAGT-AATC--AAGTACG
70509927 ATGCCAACGTCCCAGACGTGGTCTTACA
1 ATGCCAACGTCCCAGACGTGGTCTTACA
70509955 CGATAACACA
Statistics
Matches: 95, Mismatches: 12, Indels: 13
0.79 0.10 0.11
Matches are distributed among these distances:
41 1 0.01
42 26 0.27
43 34 0.36
44 30 0.32
45 4 0.04
ACGTcount: A:0.32, C:0.27, G:0.18, T:0.24
Consensus pattern (42 bp):
ATGCCAACGTCCCAGACGTGGTCTTACAAGTAATCAAGTACG
Found at i:70520736 original size:7 final size:6
Alignment explanation
Indices: 70520702--70520740 Score: 51
Period size: 6 Copynumber: 6.5 Consensus size: 6
70520692 GTTTAAAAAC
* * *
70520702 TTTTTA TTTTTA TTTTTA TTTTCA CTTTTA TCTTTA TTT
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTT
70520741 ATCTTAATTA
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.15, C:0.08, G:0.00, T:0.77
Consensus pattern (6 bp):
TTTTTA
Found at i:70528909 original size:27 final size:27
Alignment explanation
Indices: 70528869--70528933 Score: 96
Period size: 27 Copynumber: 2.4 Consensus size: 27
70528859 AGGAAGCGTC
*
70528869 CTGGTGGCTATGCCACA-ATTATCTGAT
1 CTGGTGGCTCTGCCACATA-TATCTGAT
*
70528896 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACATATATCTGAT
70528923 CTGGTGGCTCT
1 CTGGTGGCTCT
70528934 ACCATGATCA
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
27 34 0.97
28 1 0.03
ACGTcount: A:0.15, C:0.25, G:0.25, T:0.35
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACATATATCTGAT
Found at i:70528946 original size:27 final size:25
Alignment explanation
Indices: 70528888--70528980 Score: 80
Period size: 27 Copynumber: 3.5 Consensus size: 25
70528878 ATGCCACAAT
* *
70528888 TATCTGATCTGGTGGCTCTGCCACATA
1 TATCTGTTCTGGTGGCTCT-AC-CATA
70528915 TATCTGTTCTGGTGGCTCTACCATGA
1 TATCTGTTCTGGTGGCTCTACCAT-A
* *
70528941 TCATCTGTATCTAGTGACTCTATCACAT-
1 T-ATCTGT-TCTGGTGGCTCTA-C-CATA
70528969 TATCTGTTCTGG
1 TATCTGTTCTGG
70528981 CAGCCATGCT
Statistics
Matches: 56, Mismatches: 5, Indels: 11
0.78 0.07 0.15
Matches are distributed among these distances:
25 3 0.05
26 7 0.12
27 30 0.54
28 12 0.21
29 1 0.02
30 3 0.05
ACGTcount: A:0.18, C:0.24, G:0.19, T:0.39
Consensus pattern (25 bp):
TATCTGTTCTGGTGGCTCTACCATA
Found at i:70530699 original size:16 final size:16
Alignment explanation
Indices: 70530680--70530712 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
70530670 AGAAGGGACC
70530680 CCAGCTGATAGGGTAA
1 CCAGCTGATAGGGTAA
70530696 CCAGCTGATAGGGTAA
1 CCAGCTGATAGGGTAA
70530712 C
1 C
70530713 TTGGAAAATG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.30, C:0.21, G:0.30, T:0.18
Consensus pattern (16 bp):
CCAGCTGATAGGGTAA
Found at i:70535182 original size:40 final size:40
Alignment explanation
Indices: 70535138--70535241 Score: 181
Period size: 40 Copynumber: 2.6 Consensus size: 40
70535128 TCCTCGTTCA
*
70535138 AATGCCTTCGGGACATAGCCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAGCCCGGATTTAACAACTCGCACG
* *
70535178 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAGCCCGGATTTAACAACTCGCACG
70535218 AATGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
70535242 CAGCATTCAA
Statistics
Matches: 60, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 60 1.00
ACGTcount: A:0.26, C:0.29, G:0.23, T:0.22
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAGCCCGGATTTAACAACTCGCACG
Found at i:70542982 original size:40 final size:40
Alignment explanation
Indices: 70542938--70543121 Score: 221
Period size: 40 Copynumber: 4.6 Consensus size: 40
70542928 TCCTCGTTCA
* * *
70542938 AATGCCTTCGGGACATAGCCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
70542978 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
70543018 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA-G
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
70543057 AAAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 -AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
70543098 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
70543122 CAGCATTCAA
Statistics
Matches: 127, Mismatches: 12, Indels: 10
0.85 0.08 0.07
Matches are distributed among these distances:
39 4 0.03
40 116 0.91
41 7 0.06
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:70548307 original size:40 final size:40
Alignment explanation
Indices: 70548256--70548920 Score: 1143
Period size: 40 Copynumber: 16.6 Consensus size: 40
70548246 CATTTGAATG
70548256 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
70548296 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
70548336 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
*
70548376 ATATCCGGGATAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
70548416 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
70548456 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
*
70548496 ATATCCGGGATAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
*
70548536 ATATCCGGGCTAAGACCTGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
*
70548576 ATATCCGGGCTAAGACCTGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
*
70548616 ATATCCGGGCTAAGACCTGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
*
70548656 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGATTTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
* *
70548696 ATATCCAGGATAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
* *
70548736 ATATCCGGGATAAGACCCGAAGGCATTTGTGCGAACTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
* *
70548776 ATATCCGGGCTAAGACCCGACGGCGTTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
* *
70548816 ATATCCGGGCTAAGACCCGAAGGTAATTGTGC-AAGTTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAA-TTGAT
* * *
70548856 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
* *
70548896 ATACCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCA
70548921 ATTGAGCTTG
Statistics
Matches: 596, Mismatches: 27, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
39 2 0.00
40 593 0.99
41 1 0.00
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
Found at i:70551439 original size:16 final size:15
Alignment explanation
Indices: 70551413--70551443 Score: 53
Period size: 16 Copynumber: 2.0 Consensus size: 15
70551403 ACTAGATCGG
70551413 CAAAAGCCGAAAAGC
1 CAAAAGCCGAAAAGC
70551428 CAAAATGCCGAAAAGC
1 CAAAA-GCCGAAAAGC
70551444 TGGTATTTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 5 0.33
16 10 0.67
ACGTcount: A:0.52, C:0.26, G:0.19, T:0.03
Consensus pattern (15 bp):
CAAAAGCCGAAAAGC
Found at i:70551878 original size:27 final size:26
Alignment explanation
Indices: 70551838--70551947 Score: 105
Period size: 27 Copynumber: 4.1 Consensus size: 26
70551828 AAGCGTCATA
* *
70551838 GTGGCTATGGCACAATTATCTGATCTG
1 GTGGCTCTGCCAC-ATTATCTGATCTG
*
70551865 GTGGCTCTGCCACATATATCTGTTCTG
1 GTGGCTCTGCCACAT-TATCTGATCTG
* *
70551892 GTGGCTCTCCCACGATCATCTGTATCTG
1 GTGGCTCTGCCAC-ATTATCTG-ATCTG
* *
70551920 GTGACTCTGTCACATTATCT-ATTCTG
1 GTGGCTCTGCCACATTATCTGA-TCTG
70551946 GT
1 GT
70551948 AGCCATGCTG
Statistics
Matches: 69, Mismatches: 10, Indels: 9
0.78 0.11 0.10
Matches are distributed among these distances:
25 1 0.01
26 8 0.12
27 44 0.64
28 16 0.23
ACGTcount: A:0.17, C:0.25, G:0.22, T:0.36
Consensus pattern (26 bp):
GTGGCTCTGCCACATTATCTGATCTG
Found at i:70553582 original size:55 final size:55
Alignment explanation
Indices: 70553511--70553628 Score: 227
Period size: 55 Copynumber: 2.1 Consensus size: 55
70553501 CCCAAAATGC
70553511 CACACGGCTAAAGCACACGCTCGTGTGCTAGGCCATGTCCCTCACACAGTTGAGA
1 CACACGGCTAAAGCACACGCTCGTGTGCTAGGCCATGTCCCTCACACAGTTGAGA
*
70553566 CACACGGCTAAGGCACACGCTCGTGTGCTAGGCCATGTCCCTCACACAGTTGAGA
1 CACACGGCTAAAGCACACGCTCGTGTGCTAGGCCATGTCCCTCACACAGTTGAGA
70553621 CACACGGC
1 CACACGGC
70553629 CGTGTCTCTA
Statistics
Matches: 62, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
55 62 1.00
ACGTcount: A:0.25, C:0.34, G:0.25, T:0.17
Consensus pattern (55 bp):
CACACGGCTAAAGCACACGCTCGTGTGCTAGGCCATGTCCCTCACACAGTTGAGA
Found at i:70555127 original size:29 final size:29
Alignment explanation
Indices: 70555060--70555155 Score: 149
Period size: 29 Copynumber: 3.3 Consensus size: 29
70555050 AAGTCTACAT
* *
70555060 ACATGCATATGGCCCACTAGGCCC-AATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
*
70555088 TCATTCATATGGCCCATTAGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
*
70555117 ACATTCGTATGGCCCATTAGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
70555146 ACATTCATAT
1 ACATTCATAT
70555156 ACATGCTTTC
Statistics
Matches: 61, Mismatches: 6, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
28 21 0.34
29 40 0.66
ACGTcount: A:0.29, C:0.31, G:0.15, T:0.25
Consensus pattern (29 bp):
ACATTCATATGGCCCATTAGGCCCAAATC
Found at i:70557387 original size:46 final size:48
Alignment explanation
Indices: 70557257--70557474 Score: 168
Period size: 47 Copynumber: 4.6 Consensus size: 48
70557247 GCCTCAAACG
* ** * * * *
70557257 TGCCATGTCCCAAACACAGTCTTACACTA--ATTCATATCTTATGTTGA
1 TGCCATGTCCCAGACATGGTCTTACACTAGCACTCATCTCGTA-GCTGA
70557304 TGCCATGTCCCAGACATGGTCTTACACT-G-ACTATCATCTCGTAGCTGA
1 TGCCATGTCCCAGACATGGTCTTACACTAGCAC--TCATCTCGTAGCTGA
* *
70557352 TG-CATGTCCTAGACAT-GTCTTACACTAGCACTCATCTCG-ATGCCGA
1 TGCCATGTCCCAGACATGGTCTTACACTAGCACTCATCTCGTA-GCTGA
* * * * * * *
70557398 TGCCGTCTCCCAGACATGGTCTTACACTGGCTCTCATAAT-GTGGGTGA
1 TGCCATGTCCCAGACATGGTCTTACACTAGCACTCAT-CTCGTAGCTGA
*
70557446 T-ACATGTCCCAGACAT-GTCTTACACTAGC
1 TGCCATGTCCCAGACATGGTCTTACACTAGC
70557475 CCACAATAAC
Statistics
Matches: 139, Mismatches: 22, Indels: 21
0.76 0.12 0.12
Matches are distributed among these distances:
45 1 0.01
46 36 0.26
47 63 0.45
48 30 0.22
49 9 0.06
ACGTcount: A:0.24, C:0.28, G:0.17, T:0.30
Consensus pattern (48 bp):
TGCCATGTCCCAGACATGGTCTTACACTAGCACTCATCTCGTAGCTGA
Found at i:70557421 original size:94 final size:94
Alignment explanation
Indices: 70557302--70557474 Score: 249
Period size: 94 Copynumber: 1.8 Consensus size: 94
70557292 ATCTTATGTT
* * * *
70557302 GATGCCATGTCCCAGACATGGTCTTACACTGACTATCAT-CTCGTAGCTGATGCATGTCCTAGAC
1 GATGCCATCTCCCAGACATGGTCTTACACTGACTATCATAAT-GTAGCTGATACATGTCCCAGAC
70557366 ATGTCTTACACTAGCACTCATCTCGATGCC
65 ATGTCTTACACTAGCACTCATCTCGATGCC
* * * * *
70557396 GATGCCGTCTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGGTGATACATGTCCCAGACA
1 GATGCCATCTCCCAGACATGGTCTTACACTGACTATCATAATGTAGCTGATACATGTCCCAGACA
70557461 TGTCTTACACTAGC
66 TGTCTTACACTAGC
70557475 CCACAATAAC
Statistics
Matches: 69, Mismatches: 9, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
94 68 0.99
95 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (94 bp):
GATGCCATCTCCCAGACATGGTCTTACACTGACTATCATAATGTAGCTGATACATGTCCCAGACA
TGTCTTACACTAGCACTCATCTCGATGCC
Found at i:70557434 original size:48 final size:48
Alignment explanation
Indices: 70557302--70557434 Score: 164
Period size: 46 Copynumber: 2.8 Consensus size: 48
70557292 ATCTTATGTT
* * *
70557302 GATGCCATGTCCCAGACATGGTCTTACACTGACTATCATCTCGTAGCT
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATCTCGTAGCC
* * *
70557350 GATG-CATGTCCTAGACAT-GTCTTACACTAGCACTCATCTCG-ATGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATCTCGTA-GCC
* *
70557396 GATGCCGTCTCCCAGACATGGTCTTACACTGGCTCTCAT
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCAT
70557435 AATGTGGGTG
Statistics
Matches: 71, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
45 1 0.01
46 25 0.35
47 24 0.34
48 21 0.30
ACGTcount: A:0.22, C:0.31, G:0.19, T:0.29
Consensus pattern (48 bp):
GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATCTCGTAGCC
Found at i:70567491 original size:20 final size:21
Alignment explanation
Indices: 70567459--70567497 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
70567449 CACTAGGATG
70567459 GTTGAGTTCCGAGCTCGTTGA
1 GTTGAGTTCCGAGCTCGTTGA
*
70567480 GTTGAG-TCCGAGTTCGTT
1 GTTGAGTTCCGAGCTCGTT
70567498 AATATGCGGG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.13, C:0.18, G:0.33, T:0.36
Consensus pattern (21 bp):
GTTGAGTTCCGAGCTCGTTGA
Found at i:70568466 original size:40 final size:40
Alignment explanation
Indices: 70568422--70568502 Score: 162
Period size: 40 Copynumber: 2.0 Consensus size: 40
70568412 TTTACCTTAC
70568422 ATGTATGAGATCCTTGTTGAGTCTAGTTTTATGAGAAACA
1 ATGTATGAGATCCTTGTTGAGTCTAGTTTTATGAGAAACA
70568462 ATGTATGAGATCCTTGTTGAGTCTAGTTTTATGAGAAACA
1 ATGTATGAGATCCTTGTTGAGTCTAGTTTTATGAGAAACA
70568502 A
1 A
70568503 AAGGCATAAT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 41 1.00
ACGTcount: A:0.31, C:0.10, G:0.22, T:0.37
Consensus pattern (40 bp):
ATGTATGAGATCCTTGTTGAGTCTAGTTTTATGAGAAACA
Found at i:70571580 original size:46 final size:45
Alignment explanation
Indices: 70571538--70571710 Score: 204
Period size: 46 Copynumber: 3.7 Consensus size: 45
70571528 CATCTCGTAA
70571538 CCGATGCATGTCCCAGACATGTCTTACACTAGCTTACGTCTCGAGG
1 CCGATGCATGTCCCAGACATGTCTTACACTAGCTT-CGTCTCGAGG
* * *
70571584 CTGATGCATGTCCCAGACATGTCTTACACTAGCACTCGTCTCGATG
1 CCGATGCATGTCCCAGACATGTCTTACACTAGC-TTCGTCTCGAGG
* * * *
70571630 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAAT-GTGG
1 CCGATG-CATGTCCCAGACAT-GTCTTACACTAGCT-TCGT-CTCGAGG
* *
70571678 CTGATGCATGTCCCAGACATGTCTTACAGTAGC
1 CCGATGCATGTCCCAGACATGTCTTACACTAGC
70571711 CCACAATAAC
Statistics
Matches: 109, Mismatches: 13, Indels: 10
0.83 0.10 0.08
Matches are distributed among these distances:
46 57 0.52
47 29 0.27
48 22 0.20
49 1 0.01
ACGTcount: A:0.22, C:0.29, G:0.21, T:0.27
Consensus pattern (45 bp):
CCGATGCATGTCCCAGACATGTCTTACACTAGCTTCGTCTCGAGG
Found at i:70571691 original size:94 final size:92
Alignment explanation
Indices: 70571538--70571710 Score: 251
Period size: 94 Copynumber: 1.9 Consensus size: 92
70571528 CATCTCGTAA
* *
70571538 CCGATGCATGTCCCAGACATGTCTTACACTAGCTTACGTCTCGAGGCTGATGCATGTCCCAGACA
1 CCGATGCATGTCCCAGACATGTCTTACACTAGCTTACATATCGAGGCTGATGCATGTCCCAGACA
70571603 TGTCTTACACTAGCACTCGTCTCGATG
66 TGTCTTACACTAGCACTCGTCTCGATG
* *
70571630 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCT-CATAAT-GTGGCTGATGCATGTCCCA
1 CCGATG-CATGTCCCAGACAT-GTCTTACACTAGCT-TACAT-ATCGAGGCTGATGCATGTCCCA
*
70571693 GACATGTCTTACAGTAGC
62 GACATGTCTTACACTAGC
70571711 CCACAATAAC
Statistics
Matches: 72, Mismatches: 5, Indels: 6
0.87 0.06 0.07
Matches are distributed among these distances:
92 6 0.08
93 14 0.19
94 50 0.69
95 2 0.03
ACGTcount: A:0.22, C:0.29, G:0.21, T:0.27
Consensus pattern (92 bp):
CCGATGCATGTCCCAGACATGTCTTACACTAGCTTACATATCGAGGCTGATGCATGTCCCAGACA
TGTCTTACACTAGCACTCGTCTCGATG
Found at i:70579288 original size:43 final size:43
Alignment explanation
Indices: 70579223--70579334 Score: 131
Period size: 43 Copynumber: 2.6 Consensus size: 43
70579213 GCTCGTACAA
* * * *
70579223 TGCCAACATCCTAGACGTGGTCTTACATGTAATCAATTATCG-T
1 TGCCAATATCCCAGACGTGGTCTTACATGAAATCAAGTA-CGAT
70579266 TGCCAATATCCCAGACAG-GGTCTTACATGAAATCAAGTACGAT
1 TGCCAATATCCCAGAC-GTGGTCTTACATGAAATCAAGTACGAT
* *
70579309 T-CCAATGTCCCAAACGTGGTCTTACA
1 TGCCAATATCCCAGACGTGGTCTTACA
70579335 CATAAATCAT
Statistics
Matches: 60, Mismatches: 6, Indels: 7
0.82 0.08 0.10
Matches are distributed among these distances:
41 1 0.02
42 23 0.38
43 35 0.58
44 1 0.02
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (43 bp):
TGCCAATATCCCAGACGTGGTCTTACATGAAATCAAGTACGAT
Found at i:70579536 original size:14 final size:14
Alignment explanation
Indices: 70579519--70579546 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
70579509 CATCTATCAC
70579519 AATTCAATATCATA
1 AATTCAATATCATA
70579533 AATTCAATATCATA
1 AATTCAATATCATA
70579547 TGAGCATAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.50, C:0.14, G:0.00, T:0.36
Consensus pattern (14 bp):
AATTCAATATCATA
Found at i:70586982 original size:93 final size:93
Alignment explanation
Indices: 70586823--70586995 Score: 292
Period size: 93 Copynumber: 1.9 Consensus size: 93
70586813 CGCCCATAAG
* * * *
70586823 CGAACTCGGACTCAATTCAATGAGCTCGGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
70586888 ACGAGTTCGGATGCCTAGTTACATTTCA
66 ACGAGTTCGGATGCCTAGTTACATTTCA
* *
70586916 CGAACTCGGACTCAACTCAACGAGTTCAGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
70586981 ACGAGTTCGGATGCC
66 ACGAGTTCGGATGCC
70586996 CAAATATCCG
Statistics
Matches: 74, Mismatches: 6, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATTTCA
Found at i:70586984 original size:46 final size:46
Alignment explanation
Indices: 70586816--70586991 Score: 185
Period size: 46 Copynumber: 3.8 Consensus size: 46
70586806 TGTAACCCGC
* * * * *
70586816 CCATAAGCGAACTCGGACTCAATTCAATGAGCTCGGGCATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
* * * * *
70586862 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAG-TT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACG-TTCGCAT
* * *
70586908 ACATTTCA-CGAACTCGGACTCAACTCAACGAGTTCAGACGTTCGCAT
1 CCA--TAAGCGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
*
70586955 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
70586992 TGCCCAAATA
Statistics
Matches: 103, Mismatches: 22, Indels: 10
0.76 0.16 0.07
Matches are distributed among these distances:
45 2 0.02
46 65 0.63
47 34 0.33
48 2 0.02
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
Found at i:70589231 original size:15 final size:15
Alignment explanation
Indices: 70589211--70589239 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
70589201 TCTATTGATA
70589211 ATCTCAAAATAATCC
1 ATCTCAAAATAATCC
70589226 ATCTCAAAATAATC
1 ATCTCAAAATAATC
70589240 TATAAGTAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.48, C:0.24, G:0.00, T:0.28
Consensus pattern (15 bp):
ATCTCAAAATAATCC
Found at i:70595422 original size:20 final size:20
Alignment explanation
Indices: 70595397--70595437 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
70595387 CCACTACAGT
* *
70595397 TTAAATTTTCCAAATTTTTC
1 TTAAATGTTCCAAATGTTTC
70595417 TTAAATGTTCCAAATGTTTC
1 TTAAATGTTCCAAATGTTTC
70595437 T
1 T
70595438 GATTTAGTCC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.29, C:0.15, G:0.05, T:0.51
Consensus pattern (20 bp):
TTAAATGTTCCAAATGTTTC
Found at i:70601236 original size:27 final size:27
Alignment explanation
Indices: 70601166--70601239 Score: 123
Period size: 26 Copynumber: 2.8 Consensus size: 27
70601156 ATTACCAAAG
*
70601166 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCAATTTACAGAATTACCGTTT
70601193 TA-CCTCAATTTACAGAATTACCGTTT
1 TACCCTCAATTTACAGAATTACCGTTT
*
70601219 TACCCTCAATTTATAGAATTA
1 TACCCTCAATTTACAGAATTA
70601240 TCGAAATACC
Statistics
Matches: 44, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
26 25 0.57
27 19 0.43
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (27 bp):
TACCCTCAATTTACAGAATTACCGTTT
Found at i:70601249 original size:27 final size:27
Alignment explanation
Indices: 70601155--70601279 Score: 92
Period size: 27 Copynumber: 4.7 Consensus size: 27
70601145 CAATTTGTAA
*
70601155 AATTACC-AAAGTACCCTCGATTTACAG
1 AATTACCGAAA-TACCCTCAATTTACAG
***
70601182 AATTACCGTTTTA-CCTCAATTTACAG
1 AATTACCGAAATACCCTCAATTTACAG
*** *
70601208 AATTACCGTTTTACCCTCAATTTATAG
1 AATTACCGAAATACCCTCAATTTACAG
* * * * *
70601235 AATTATCGAAATACCCTTAGTTTGCAA
1 AATTACCGAAATACCCTCAATTTACAG
* *
70601262 AATTTCCAAAATACCCTC
1 AATTACCGAAATACCCTC
70601280 GATCAATAAA
Statistics
Matches: 78, Mismatches: 18, Indels: 4
0.78 0.18 0.04
Matches are distributed among these distances:
26 25 0.32
27 53 0.68
ACGTcount: A:0.34, C:0.24, G:0.08, T:0.34
Consensus pattern (27 bp):
AATTACCGAAATACCCTCAATTTACAG
Found at i:70601453 original size:27 final size:27
Alignment explanation
Indices: 70601243--70601437 Score: 232
Period size: 27 Copynumber: 7.2 Consensus size: 27
70601233 AGAATTATCG
* * *
70601243 AAATACCCTTAGTTTGCAAAATTTCCA
1 AAATACCCCTAGTTTGTAAAATTACCA
* ***
70601270 AAATA-CCCTCGATCAATAAAATTACCA
1 AAATACCCCTAG-TTTGTAAAATTACCA
*
70601297 AAATACCCCTAGTTTGTAAAATTACTA
1 AAATACCCCTAGTTTGTAAAATTACCA
*
70601324 AAATACCCCTGGTTTGTAAAATTACCA
1 AAATACCCCTAGTTTGTAAAATTACCA
70601351 AAATACCCCTAGTTTGTAAAATTACCA
1 AAATACCCCTAGTTTGTAAAATTACCA
* *
70601378 AAATACCCCTGGCTTGTAAAATTACCA
1 AAATACCCCTAGTTTGTAAAATTACCA
* * *
70601405 AAATACCCCT-GATTCGTGAAATTATCA
1 AAATACCCCTAG-TTTGTAAAATTACCA
70601432 AAATAC
1 AAATAC
70601438 TCTCAATTTG
Statistics
Matches: 144, Mismatches: 21, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
26 5 0.03
27 134 0.93
28 5 0.03
ACGTcount: A:0.41, C:0.23, G:0.08, T:0.29
Consensus pattern (27 bp):
AAATACCCCTAGTTTGTAAAATTACCA
Found at i:70601485 original size:27 final size:27
Alignment explanation
Indices: 70601456--70601618 Score: 218
Period size: 27 Copynumber: 6.0 Consensus size: 27
70601446 TGTAAAATAT
* *
70601456 CGAAATACCCTTGTAGGGTAGAATTAT
1 CGAAATACCCCTGTAGGGTAGAATTAC
* *
70601483 CGAAATGCCCCTGTAGGATAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
*
70601510 CGAAATACCCCTGTAAGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
* *
70601537 TGAAATACCCCTGTAGGGTAGAATCAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
*
70601564 CAAAATACCCCTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
* * * *
70601591 CGAGATACCCTTGTGGGGTAAAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
70601618 C
1 C
70601619 ATTTTACCCC
Statistics
Matches: 118, Mismatches: 18, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 118 1.00
ACGTcount: A:0.34, C:0.21, G:0.21, T:0.24
Consensus pattern (27 bp):
CGAAATACCCCTGTAGGGTAGAATTAC
Found at i:70601897 original size:24 final size:25
Alignment explanation
Indices: 70601821--70601890 Score: 97
Period size: 25 Copynumber: 2.8 Consensus size: 25
70601811 AGGAAGTGCT
* *
70601821 AAAAGGG-TTATGCCCCAGTTTACCG
1 AAAAGGGATT-TGCCCCAGTTTATCA
*
70601846 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGATTTGCCCCAGTTTATCA
70601871 AAAAGGGATTTGCCCCAGTT
1 AAAAGGGATTTGCCCCAGTT
70601891 ATTAAAAGAG
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
25 39 0.95
26 2 0.05
ACGTcount: A:0.29, C:0.23, G:0.23, T:0.26
Consensus pattern (25 bp):
AAAAGGGATTTGCCCCAGTTTATCA
Found at i:70604343 original size:27 final size:27
Alignment explanation
Indices: 70604299--70604558 Score: 174
Period size: 27 Copynumber: 9.6 Consensus size: 27
70604289 TTAGTTTACC
* * *
70604299 AAATTACTAAAATGCCCTCAATTTGTA
1 AAATTACCAAAATACCCTCAGTTTGTA
* *
70604326 AAATTACCAAAGTACCCTC-GATTTATA
1 AAATTACCAAAATACCCTCAG-TTTGTA
* **** *
70604353 GAATTACCGTTTTACCCTC-GATTTATA
1 AAATTACCAAAATACCCTCAG-TTTGTA
* * * * * *
70604380 GAATTATCGAAATACCCTTAGCTTGCA
1 AAATTACCAAAATACCCTCAGTTTGTA
* **
70604407 AAATTTCCAAAATACCCTC-GATCAGTA
1 AAATTACCAAAATACCCTCAG-TTTGTA
70604434 AAATTACCAAAATACCC-CTAGTTTGTA
1 AAATTACCAAAATACCCTC-AGTTTGTA
* *
70604461 AAATTACTAAAATA-ACTCTAGTTTGTA
1 AAATTACCAAAATACCCTC-AGTTTGTA
* *
70604488 AAATTACTAAAATACCC-CTAGTTTGGA
1 AAATTACCAAAATACCCTC-AGTTTGTA
* *
70604515 AAATTACCAAAATACCC-CTGGCTTGTA
1 AAATTACCAAAATACCCTC-AGTTTGTA
70604542 AAATTACCAAAATACCC
1 AAATTACCAAAATACCC
70604559 CTGATTCTCA
Statistics
Matches: 188, Mismatches: 38, Indels: 14
0.78 0.16 0.06
Matches are distributed among these distances:
26 3 0.02
27 182 0.97
28 3 0.02
ACGTcount: A:0.39, C:0.22, G:0.09, T:0.30
Consensus pattern (27 bp):
AAATTACCAAAATACCCTCAGTTTGTA
Found at i:70604561 original size:27 final size:27
Alignment explanation
Indices: 70604389--70604560 Score: 202
Period size: 27 Copynumber: 6.4 Consensus size: 27
70604379 AGAATTATCG
* * * *
70604389 AAATACCCTTAGCTTGCAAAATTTCCA
1 AAATACCCCTAGTTTGTAAAATTACCA
* **
70604416 AAATA-CCCTCGATCAGTAAAATTACCA
1 AAATACCCCTAG-TTTGTAAAATTACCA
*
70604443 AAATACCCCTAGTTTGTAAAATTACTA
1 AAATACCCCTAGTTTGTAAAATTACCA
* * *
70604470 AAATAACTCTAGTTTGTAAAATTACTA
1 AAATACCCCTAGTTTGTAAAATTACCA
*
70604497 AAATACCCCTAGTTTGGAAAATTACCA
1 AAATACCCCTAGTTTGTAAAATTACCA
* *
70604524 AAATACCCCTGGCTTGTAAAATTACCA
1 AAATACCCCTAGTTTGTAAAATTACCA
70604551 AAATACCCCT
1 AAATACCCCT
70604561 GATTCTCAAA
Statistics
Matches: 123, Mismatches: 20, Indels: 4
0.84 0.14 0.03
Matches are distributed among these distances:
26 4 0.03
27 114 0.93
28 5 0.04
ACGTcount: A:0.41, C:0.23, G:0.08, T:0.28
Consensus pattern (27 bp):
AAATACCCCTAGTTTGTAAAATTACCA
Found at i:70608083 original size:28 final size:27
Alignment explanation
Indices: 70608039--70608148 Score: 107
Period size: 28 Copynumber: 4.0 Consensus size: 27
70608029 CTGCACAATC
* *
70608039 GATGTCTTGCACGCTAAGTGCTATACCG
1 GATGTCTTGCACACTAAGTGCCAT-CCG
*
70608067 GATGT-TTCGCACACTAAGTGCCATCCTC
1 GATGTCTT-GCACACTAAGTGCCATCC-G
* * *
70608095 GAT-ACTTCACACACTAAGTGCCATTTCG
1 GATGTCTT-GCACACTAAGTGCCA-TCCG
70608123 GATGTCTTGCACACTAAGTGCCATCC
1 GATGTCTTGCACACTAAGTGCCATCC
70608149 TCAATACTTC
Statistics
Matches: 67, Mismatches: 10, Indels: 11
0.76 0.11 0.12
Matches are distributed among these distances:
27 6 0.09
28 56 0.84
29 5 0.07
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (27 bp):
GATGTCTTGCACACTAAGTGCCATCCG
Found at i:70608125 original size:56 final size:56
Alignment explanation
Indices: 70608065--70608172 Score: 182
Period size: 56 Copynumber: 1.9 Consensus size: 56
70608055 AGTGCTATAC
*
70608065 CGGATGT-TTCGCACACTAAGTGCCATCCTCGATACTTCACACACTAAGTGCCATTT
1 CGGATGTCTT-GCACACTAAGTGCCATCCTCAATACTTCACACACTAAGTGCCATTT
*
70608121 CGGATGTCTTGCACACTAAGTGCCATCCTCAATACTTCGCACACTAAGTGCC
1 CGGATGTCTTGCACACTAAGTGCCATCCTCAATACTTCACACACTAAGTGCC
70608173 GTTCGTTTGG
Statistics
Matches: 49, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
56 47 0.96
57 2 0.04
ACGTcount: A:0.25, C:0.31, G:0.17, T:0.27
Consensus pattern (56 bp):
CGGATGTCTTGCACACTAAGTGCCATCCTCAATACTTCACACACTAAGTGCCATTT
Found at i:70608162 original size:28 final size:28
Alignment explanation
Indices: 70608072--70608172 Score: 134
Period size: 28 Copynumber: 3.6 Consensus size: 28
70608062 TACCGGATGT
70608072 TTCGCACACTAAGTGCCATCCTCGATAC
1 TTCGCACACTAAGTGCCATCCTCGATAC
* * *
70608100 TTCACACACTAAGTGCCAT-TTCGGATGTC
1 TTCGCACACTAAGTGCCATCCTC-GAT-AC
*
70608129 TT-GCACACTAAGTGCCATCCTCAATAC
1 TTCGCACACTAAGTGCCATCCTCGATAC
70608156 TTCGCACACTAAGTGCC
1 TTCGCACACTAAGTGCC
70608173 GTTCGTTTGG
Statistics
Matches: 62, Mismatches: 7, Indels: 8
0.81 0.09 0.10
Matches are distributed among these distances:
27 5 0.08
28 52 0.84
29 5 0.08
ACGTcount: A:0.26, C:0.33, G:0.15, T:0.27
Consensus pattern (28 bp):
TTCGCACACTAAGTGCCATCCTCGATAC
Found at i:70612711 original size:28 final size:27
Alignment explanation
Indices: 70612667--70612776 Score: 116
Period size: 28 Copynumber: 4.0 Consensus size: 27
70612657 CTGCACAATC
* *
70612667 GATGTCTTGCACGCTAAGTGCTATACCG
1 GATGTCTTGCACACTAAGTGCCAT-CCG
*
70612695 GATGT-TTCGCACACTAAGTGCCATCCTC
1 GATGTCTT-GCACACTAAGTGCCATCC-G
* *
70612723 GAT-ACTTCGCACACTAAGTGCCATTTCG
1 GATGTCTT-GCACACTAAGTGCCA-TCCG
70612751 GATGTCTTGCACACTAAGTGCCATCC
1 GATGTCTTGCACACTAAGTGCCATCC
70612777 TCAATACTTC
Statistics
Matches: 69, Mismatches: 8, Indels: 11
0.78 0.09 0.12
Matches are distributed among these distances:
27 6 0.09
28 58 0.84
29 5 0.07
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (27 bp):
GATGTCTTGCACACTAAGTGCCATCCG
Found at i:70612753 original size:56 final size:56
Alignment explanation
Indices: 70612675--70612800 Score: 191
Period size: 56 Copynumber: 2.2 Consensus size: 56
70612665 TCGATGTCTT
* * *
70612675 GCACGCTAAGTGCTATACCGGATGT-TTCGCACACTAAGTGCCATCCTCGATACTTC
1 GCACACTAAGTGCCATACCGGATGTCTT-GCACACTAAGTGCCATCCTCAATACTTC
**
70612731 GCACACTAAGTGCCATTTCGGATGTCTTGCACACTAAGTGCCATCCTCAATACTTC
1 GCACACTAAGTGCCATACCGGATGTCTTGCACACTAAGTGCCATCCTCAATACTTC
70612787 GCACACTAAGTGCC
1 GCACACTAAGTGCC
70612801 GTTCGTTTGG
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
56 62 0.97
57 2 0.03
ACGTcount: A:0.25, C:0.31, G:0.18, T:0.26
Consensus pattern (56 bp):
GCACACTAAGTGCCATACCGGATGTCTTGCACACTAAGTGCCATCCTCAATACTTC
Found at i:70612790 original size:28 final size:28
Alignment explanation
Indices: 70612700--70612800 Score: 143
Period size: 28 Copynumber: 3.6 Consensus size: 28
70612690 TACCGGATGT
70612700 TTCGCACACTAAGTGCCATCCTCGATAC
1 TTCGCACACTAAGTGCCATCCTCGATAC
* *
70612728 TTCGCACACTAAGTGCCAT-TTCGGATGTC
1 TTCGCACACTAAGTGCCATCCTC-GAT-AC
*
70612757 TT-GCACACTAAGTGCCATCCTCAATAC
1 TTCGCACACTAAGTGCCATCCTCGATAC
70612784 TTCGCACACTAAGTGCC
1 TTCGCACACTAAGTGCC
70612801 GTTCGTTTGG
Statistics
Matches: 64, Mismatches: 5, Indels: 8
0.83 0.06 0.10
Matches are distributed among these distances:
27 5 0.08
28 54 0.84
29 5 0.08
ACGTcount: A:0.25, C:0.33, G:0.16, T:0.27
Consensus pattern (28 bp):
TTCGCACACTAAGTGCCATCCTCGATAC
Found at i:70618924 original size:30 final size:31
Alignment explanation
Indices: 70618883--70618944 Score: 99
Period size: 30 Copynumber: 2.0 Consensus size: 31
70618873 CCTTTAATAC
*
70618883 AAACTTTTTGCAAAATTACATTTTTGCCCCT
1 AAACTTTTTGCAAAATTACACTTTTGCCCCT
*
70618914 AAAC-TTTTGCATAATTACACTTTTGCCCCT
1 AAACTTTTTGCAAAATTACACTTTTGCCCCT
70618944 A
1 A
70618945 GGCTCGGGAA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
30 25 0.86
31 4 0.14
ACGTcount: A:0.29, C:0.24, G:0.06, T:0.40
Consensus pattern (31 bp):
AAACTTTTTGCAAAATTACACTTTTGCCCCT
Found at i:70630311 original size:13 final size:13
Alignment explanation
Indices: 70630293--70630318 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
70630283 AGGTAAGTTC
70630293 GTGTAATTATATT
1 GTGTAATTATATT
70630306 GTGTAATTATATT
1 GTGTAATTATATT
70630319 CTTTAATTTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.00, G:0.15, T:0.54
Consensus pattern (13 bp):
GTGTAATTATATT
Found at i:70630552 original size:22 final size:23
Alignment explanation
Indices: 70630493--70630552 Score: 59
Period size: 22 Copynumber: 2.6 Consensus size: 23
70630483 ACCGATACTC
*
70630493 AGCTCGTATGAGCTTACTATTATTT
1 AGCTCGTATGAGCTTAC--TTAGTT
* * *
70630518 AGGTCGGAGGAGCTTAC-TAGTT
1 AGCTCGTATGAGCTTACTTAGTT
70630540 AGCTCGTATGAGC
1 AGCTCGTATGAGC
70630553 CTACATGTAC
Statistics
Matches: 28, Mismatches: 7, Indels: 3
0.74 0.18 0.08
Matches are distributed among these distances:
22 14 0.50
25 14 0.50
ACGTcount: A:0.23, C:0.17, G:0.27, T:0.33
Consensus pattern (23 bp):
AGCTCGTATGAGCTTACTTAGTT
Found at i:70638580 original size:43 final size:44
Alignment explanation
Indices: 70638523--70638642 Score: 124
Period size: 43 Copynumber: 2.8 Consensus size: 44
70638513 AGAACATACA
*
70638523 CAATGCCAAC-GTCCCAGACGTGGTCTTACATGTAATCAAACAT
1 CAATGCCAACTGTCCCAAACGTGGTCTTACATGTAATCAAACAT
* * * *
70638566 CAATGCC-ACTGTCCCAAATAG-GGTCTTACACGAAATCAAATAT
1 CAATGCCAACTGTCCCAAA-CGTGGTCTTACATGTAATCAAACAT
* * *
70638609 -GATGCCGA-TGTCCCAAACATGGTCTTACATGTAA
1 CAATGCCAACTGTCCCAAACGTGGTCTTACATGTAA
70638643 AATAGAAGTC
Statistics
Matches: 63, Mismatches: 10, Indels: 9
0.77 0.12 0.11
Matches are distributed among these distances:
42 28 0.44
43 34 0.54
44 1 0.02
ACGTcount: A:0.33, C:0.26, G:0.17, T:0.24
Consensus pattern (44 bp):
CAATGCCAACTGTCCCAAACGTGGTCTTACATGTAATCAAACAT
Found at i:70639505 original size:11 final size:11
Alignment explanation
Indices: 70639478--70639507 Score: 53
Period size: 10 Copynumber: 2.8 Consensus size: 11
70639468 ACCCTAGGTA
70639478 GTTATTTTCTT
1 GTTATTTTCTT
70639489 -TTATTTTCTT
1 GTTATTTTCTT
70639499 GTTATTTTC
1 GTTATTTTC
70639508 AGTCATGGAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
10 10 0.56
11 8 0.44
ACGTcount: A:0.10, C:0.10, G:0.07, T:0.73
Consensus pattern (11 bp):
GTTATTTTCTT
Found at i:70642708 original size:20 final size:21
Alignment explanation
Indices: 70642683--70642729 Score: 71
Period size: 20 Copynumber: 2.3 Consensus size: 21
70642673 GTTTTGATAT
*
70642683 ACATGATTGA-TATGATATGC
1 ACATGATTAAGTATGATATGC
70642703 ACATGA-TAAGTATGATATGC
1 ACATGATTAAGTATGATATGC
70642723 ACATGAT
1 ACATGAT
70642730 GTATTCATAA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
19 2 0.08
20 22 0.92
ACGTcount: A:0.38, C:0.11, G:0.19, T:0.32
Consensus pattern (21 bp):
ACATGATTAAGTATGATATGC
Found at i:70642804 original size:24 final size:24
Alignment explanation
Indices: 70642777--70642908 Score: 167
Period size: 25 Copynumber: 5.4 Consensus size: 24
70642767 AGGAAGTGCA
* * *
70642777 AAAAGGGCTATGCCCTAGTTTACC
1 AAAAGGGCTTTGCCCCAGTTTATC
* *
70642801 AAAAAGGGCTTTTGCCCAAGTTTATT
1 -AAAAGGGC-TTTGCCCCAGTTTATC
70642827 AAAAGGGCTTTTGCCCCAGTTTATC
1 AAAAGGGC-TTTGCCCCAGTTTATC
70642852 AAAAGGGCTTTGCCCCAGTTTATC
1 AAAAGGGCTTTGCCCCAGTTTATC
*
70642876 AAAAGGGCTTTGCCCCAG-TTATT
1 AAAAGGGCTTTGCCCCAGTTTATC
70642899 AAAAGAGGCT
1 AAAAG-GGCT
70642909 AGGCCTCGAG
Statistics
Matches: 98, Mismatches: 7, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
23 9 0.09
24 38 0.39
25 39 0.40
26 12 0.12
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (24 bp):
AAAAGGGCTTTGCCCCAGTTTATC
Found at i:70642881 original size:49 final size:48
Alignment explanation
Indices: 70642777--70642908 Score: 167
Period size: 49 Copynumber: 2.7 Consensus size: 48
70642767 AGGAAGTGCA
* * * *
70642777 AAAAGGGCTATGCCCTAGTTTACCAAAAAGGGCTTTTGCCCAAGTTTATT
1 AAAAGGGCTTTGCCCCAGTTTATC-AAAAGGGC-TTTGCCCAAGTTTATC
*
70642827 AAAAGGGCTTTTGCCCCAGTTTATCAAAAGGGCTTTGCCCCAGTTTATC
1 AAAAGGGC-TTTGCCCCAGTTTATCAAAAGGGCTTTGCCCAAGTTTATC
*
70642876 AAAAGGGCTTTGCCCCAG-TTATTAAAAGAGGCT
1 AAAAGGGCTTTGCCCCAGTTTATCAAAAG-GGCT
70642909 AGGCCTCGAG
Statistics
Matches: 74, Mismatches: 6, Indels: 6
0.86 0.07 0.07
Matches are distributed among these distances:
47 9 0.12
48 14 0.19
49 22 0.30
50 16 0.22
51 13 0.18
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (48 bp):
AAAAGGGCTTTGCCCCAGTTTATCAAAAGGGCTTTGCCCAAGTTTATC
Found at i:70643152 original size:31 final size:31
Alignment explanation
Indices: 70643117--70643203 Score: 111
Period size: 38 Copynumber: 2.6 Consensus size: 31
70643107 CGTTTACAGT
70643117 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
70643148 AAAGGCTTCGGCCCAGTGTTAGGAAATATGAAATATGA
1 AAAGGCTTCGGCCCA--G-T----AATATGAAATATGA
70643186 AAAGGCTTCGGCCCAGTA
1 AAAGGCTTCGGCCCAGTA
70643204 TACGCTGAGT
Statistics
Matches: 49, Mismatches: 0, Indels: 14
0.78 0.00 0.22
Matches are distributed among these distances:
31 16 0.33
33 1 0.02
34 1 0.02
35 1 0.02
36 1 0.02
38 29 0.59
ACGTcount: A:0.36, C:0.17, G:0.25, T:0.22
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:70645835 original size:46 final size:45
Alignment explanation
Indices: 70645785--70645957 Score: 165
Period size: 46 Copynumber: 3.8 Consensus size: 45
70645775 TGGTTGAGCA
*
70645785 TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAATG
* * *
70645831 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAA-T--G
* * *
70645876 CATCTGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAATG
* *
70645924 -CCTGAGCTCGTTGAGTTGAGTCCGAGTTAACTTA
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTA
70645958 GGGGCGGGTT
Statistics
Matches: 105, Mismatches: 12, Indels: 20
0.77 0.09 0.15
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 4 0.04
46 58 0.55
47 27 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.18, G:0.29, T:0.31
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAATG
Found at i:70645941 original size:93 final size:93
Alignment explanation
Indices: 70645782--70645951 Score: 270
Period size: 93 Copynumber: 1.8 Consensus size: 93
70645772 GGATGGTTGA
* *
70645782 GCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
70645847 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * * *
70645875 GCATCTGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACG-CCTGAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCC-GAACTCGTTGAG
70645939 TTGAGTCCGAGTT
65 TTGAGTCCGAGTT
70645952 AACTTAGGGG
Statistics
Matches: 70, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
92 2 0.03
93 68 0.97
ACGTcount: A:0.21, C:0.19, G:0.30, T:0.31
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:70653413 original size:46 final size:46
Alignment explanation
Indices: 70653363--70653530 Score: 175
Period size: 46 Copynumber: 3.7 Consensus size: 46
70653353 TTGAGCATCC
70653363 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCG
* * * *
70653409 AACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGGCATCTG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G--TCCG
* * * *
70653456 AGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGCCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCG
*
70653502 AGCTCGTTGAGTTGAGTCCGAGTT-ACTTA
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTA
70653531 GGGGCAGGTT
Statistics
Matches: 100, Mismatches: 13, Indels: 19
0.76 0.10 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 8 0.08
46 50 0.50
47 26 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.19, G:0.29, T:0.30
Consensus pattern (46 bp):
AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCG
Found at i:70661082 original size:20 final size:20
Alignment explanation
Indices: 70661057--70661107 Score: 86
Period size: 20 Copynumber: 2.5 Consensus size: 20
70661047 GTTTTAATAT
70661057 ACATGAT-TGATATGATATGC
1 ACATGATAT-ATATGATATGC
70661077 ACATGATATATATGATATGC
1 ACATGATATATATGATATGC
70661097 ACATGATATAT
1 ACATGATATAT
70661108 TATAATGCAT
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
20 29 0.97
21 1 0.03
ACGTcount: A:0.39, C:0.10, G:0.16, T:0.35
Consensus pattern (20 bp):
ACATGATATATATGATATGC
Found at i:70661084 original size:11 final size:11
Alignment explanation
Indices: 70661068--70661105 Score: 53
Period size: 11 Copynumber: 3.6 Consensus size: 11
70661058 CATGATTGAT
70661068 ATGATATGCAC
1 ATGATATGCAC
*
70661079 ATGATAT--AT
1 ATGATATGCAC
70661088 ATGATATGCAC
1 ATGATATGCAC
70661099 ATGATAT
1 ATGATAT
70661106 ATTATAATGC
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
9 8 0.35
11 15 0.65
ACGTcount: A:0.39, C:0.11, G:0.16, T:0.34
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:70661178 original size:26 final size:24
Alignment explanation
Indices: 70661150--70661244 Score: 104
Period size: 25 Copynumber: 3.9 Consensus size: 24
70661140 AGGAAGTGCA
* *
70661150 AAAAGGGC-TATGCCCTAGTTTACC
1 AAAAGGGCTTTTGCCCCAGTTTA-C
*
70661174 GAAAAGGGCTTTTGCCCCAGTTTATT
1 -AAAAGGGCTTTTGCCCCAGTTTA-C
70661200 AAAAGGGCTTTTGCCCCAGTTTATC
1 AAAAGGGCTTTTGCCCCAGTTTA-C
*
70661225 AAAAGGGC-TTTGCCCTAGTT
1 AAAAGGGCTTTTGCCCCAGTT
70661245 ATTAAAAGAG
Statistics
Matches: 63, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
24 11 0.17
25 40 0.63
26 12 0.19
ACGTcount: A:0.25, C:0.22, G:0.22, T:0.31
Consensus pattern (24 bp):
AAAAGGGCTTTTGCCCCAGTTTAC
Found at i:70661502 original size:31 final size:31
Alignment explanation
Indices: 70661464--70661527 Score: 85
Period size: 31 Copynumber: 2.1 Consensus size: 31
70661454 CCTTTACAGT
70661464 AAAGGCTTCAGCCC-GGCAATATGAAATATGA
1 AAAGGCTTCAGCCCAGGC-ATATGAAATATGA
* * *
70661495 AAAGGCTTCGGCCCAGTCTTATGAAATATGA
1 AAAGGCTTCAGCCCAGGCATATGAAATATGA
70661526 AA
1 AA
70661528 TATGAAAAGG
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
31 27 0.93
32 2 0.07
ACGTcount: A:0.38, C:0.19, G:0.22, T:0.22
Consensus pattern (31 bp):
AAAGGCTTCAGCCCAGGCATATGAAATATGA
Found at i:70665334 original size:48 final size:47
Alignment explanation
Indices: 70665271--70665416 Score: 159
Period size: 48 Copynumber: 3.0 Consensus size: 47
70665261 TACTCAGGAG
* * * * *
70665271 TCTCGCACACTAAGTGCCAATGTCATGGCTTGAAGCCAACTCAATATA
1 TCTCGCACCCGAAGTGCCAATATCATGGC-CGAAGCCAAATCAATATA
* *
70665319 TCTCGCACCCGAAGTGCTAATATCATGGCCCGAAGCCAAGTCAATGA-A
1 TCTCGCACCCGAAGTGCCAATATCATGG-CCGAAGCCAAATCAAT-ATA
* * *
70665367 GCTCGCACCTGAAGTGCCAATATCATGGGCCGAAGCCAAATCAATGTA
1 TCTCGCACCCGAAGTGCCAATATCAT-GGCCGAAGCCAAATCAATATA
70665415 TC
1 TC
70665417 CTCTAACAAT
Statistics
Matches: 82, Mismatches: 12, Indels: 8
0.80 0.12 0.08
Matches are distributed among these distances:
48 78 0.95
49 4 0.05
ACGTcount: A:0.31, C:0.28, G:0.20, T:0.21
Consensus pattern (47 bp):
TCTCGCACCCGAAGTGCCAATATCATGGCCGAAGCCAAATCAATATA
Found at i:70665428 original size:15 final size:15
Alignment explanation
Indices: 70665408--70665437 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
70665398 GAAGCCAAAT
70665408 CAATGTATCCTCTAA
1 CAATGTATCCTCTAA
70665423 CAATGTATCCTCTAA
1 CAATGTATCCTCTAA
70665438 TGACATATCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.33, C:0.27, G:0.07, T:0.33
Consensus pattern (15 bp):
CAATGTATCCTCTAA
Found at i:70670170 original size:15 final size:15
Alignment explanation
Indices: 70670138--70670166 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
70670128 TTTTTCTGTG
70670138 TTTATTATGTGTGAA
1 TTTATTATGTGTGAA
70670153 TTTA-TATGTGTGAA
1 TTTATTATGTGTGAA
70670167 ATTTTTGTGA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.28, C:0.00, G:0.21, T:0.52
Consensus pattern (15 bp):
TTTATTATGTGTGAA
Found at i:70676328 original size:27 final size:27
Alignment explanation
Indices: 70676296--70676485 Score: 148
Period size: 27 Copynumber: 7.0 Consensus size: 27
70676286 CCTTAATCGA
70676296 TAAAATGACTATTTTGCCCTTATGTGG
1 TAAAATGACTATTTTGCCCTTATGTGG
* * * **
70676323 TGAAATGATTGTTTTGCCCTTATGACG
1 TAAAATGACTATTTTGCCCTTATGTGG
* ***
70676350 TAAAATGACTGTTTTGCCCTTATAACG
1 TAAAATGACTATTTTGCCCTTATGTGG
**
70676377 TAAAATGACTATTTTGCCCTTGACTGTTT
1 TAAAATGACTATTTTGCCCTT-A-TGTGG
**** *
70676406 TCCCCTTGACT-TTTTGCCCTTATGTTG
1 T-AAAATGACTATTTTGCCCTTATGTGG
* * * *
70676433 TAAAATGACTGTTTTTCCCTTTTATGG
1 TAAAATGACTATTTTGCCCTTATGTGG
* *
70676460 TAAGATGACTATTTTACCCTTATGTG
1 TAAAATGACTATTTTGCCCTTATGTG
70676486 ATGTATTTTA
Statistics
Matches: 128, Mismatches: 31, Indels: 8
0.77 0.19 0.05
Matches are distributed among these distances:
26 5 0.04
27 104 0.81
28 2 0.02
29 12 0.09
30 5 0.04
ACGTcount: A:0.23, C:0.18, G:0.16, T:0.43
Consensus pattern (27 bp):
TAAAATGACTATTTTGCCCTTATGTGG
Found at i:70676425 original size:14 final size:15
Alignment explanation
Indices: 70676382--70676426 Score: 65
Period size: 15 Copynumber: 3.1 Consensus size: 15
70676372 TAACGTAAAA
70676382 TGACTATTTTGCCCT
1 TGACTATTTTGCCCT
* *
70676397 TGACTGTTTTCCCCT
1 TGACTATTTTGCCCT
70676412 TGACT-TTTTGCCCT
1 TGACTATTTTGCCCT
70676426 T
1 T
70676427 ATGTTGTAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
14 9 0.33
15 18 0.67
ACGTcount: A:0.09, C:0.29, G:0.13, T:0.49
Consensus pattern (15 bp):
TGACTATTTTGCCCT
Found at i:70681029 original size:27 final size:26
Alignment explanation
Indices: 70680999--70681309 Score: 225
Period size: 27 Copynumber: 11.7 Consensus size: 26
70680989 TTAGTTTACC
*
70680999 AAATCACCGAAATACCCCTGGTTTGTA
1 AAATTACCGAAATA-CCCTGGTTTGTA
* *
70681026 AAATTACC-AAAGTACCCCCGGTTTATA
1 AAATTACCGAAA-TA-CCCTGGTTTGTA
* * * *
70681053 AAATTACCAAAATACCGTTGATTGTA
1 AAATTACCGAAATACCCTGGTTTGTA
* *
70681079 AAATTACTGAAATACCCTCGATTTGTA
1 AAATTACCGAAATACCCT-GGTTTGTA
* ** *
70681106 AAATTATCGAAATACCCTCAATTTGCA
1 AAATTACCGAAATACCCT-GGTTTGTA
* * *
70681133 AAATTACTGAAATACCCTTGATTTGCA
1 AAATTACCGAAATACCC-TGGTTTGTA
* **
70681160 AAATTACTGAAATACCCTCGACTTGTA
1 AAATTACCGAAATACCCT-GGTTTGTA
*
70681187 AAATTACC-AAAGTACCCTCGGTTTATA
1 AAATTACCGAAA-TACCCT-GGTTTGTA
* * * *
70681214 AAATTACTGAAATACCGTTGATTGTA
1 AAATTACCGAAATACCCTGGTTTGTA
* *
70681240 AAATTACTGAAATACCCTCGATTTGTA
1 AAATTACCGAAATACCCT-GGTTTGTA
* **
70681267 AAATTACC-AAATACCCTTGTAGGGTA
1 AAATTACCGAAATACCCTGGT-TTGTA
70681293 TAAA-TACCGAAATACCC
1 -AAATTACCGAAATACCC
70681310 CTGTAGGGTA
Statistics
Matches: 232, Mismatches: 41, Indels: 22
0.79 0.14 0.07
Matches are distributed among these distances:
25 1 0.00
26 67 0.29
27 157 0.68
28 7 0.03
ACGTcount: A:0.38, C:0.21, G:0.12, T:0.30
Consensus pattern (26 bp):
AAATTACCGAAATACCCTGGTTTGTA
Found at i:70681148 original size:54 final size:53
Alignment explanation
Indices: 70681007--70681283 Score: 292
Period size: 54 Copynumber: 5.2 Consensus size: 53
70680997 CCAAATCACC
* * * * * * *
70681007 GAAATACCCCTGGTTTGTAAAATTAC-CAAAGTACCCCCGGTTTATAAAATTACC
1 GAAATA-CCCTCGATTGTAAAATTACTGAAA-TACCCTCGATTTGTAAAATTACT
* * *
70681061 AAAATACCGTTGATTGTAAAATTACTGAAATACCCTCGATTTGTAAAATTA-T
1 GAAATACCCTCGATTGTAAAATTACTGAAATACCCTCGATTTGTAAAATTACT
* * * *
70681113 CGAAATACCCTCAATTTGCAAAATTACTGAAATACCCTTGATTTGCAAAATTACT
1 -GAAATACCCTCGA-TTGTAAAATTACTGAAATACCCTCGATTTGTAAAATTACT
* * *
70681168 GAAATACCCTCGACTTGTAAAATTAC-CAAAGTACCCTCGGTTTATAAAATTACT
1 GAAATACCCTCGA-TTGTAAAATTACTGAAA-TACCCTCGATTTGTAAAATTACT
* *
70681222 GAAATACCGTTGATTGTAAAATTACTGAAATACCCTCGATTTGTAAAATTAC-
1 GAAATACCCTCGATTGTAAAATTACTGAAATACCCTCGATTTGTAAAATTACT
*
70681274 CAAATACCCT
1 GAAATACCCT
70681284 TGTAGGGTAT
Statistics
Matches: 186, Mismatches: 31, Indels: 14
0.81 0.13 0.06
Matches are distributed among these distances:
52 8 0.04
53 78 0.42
54 99 0.53
55 1 0.01
ACGTcount: A:0.38, C:0.20, G:0.11, T:0.31
Consensus pattern (53 bp):
GAAATACCCTCGATTGTAAAATTACTGAAATACCCTCGATTTGTAAAATTACT
Found at i:70681191 original size:81 final size:79
Alignment explanation
Indices: 70681007--70681283 Score: 367
Period size: 80 Copynumber: 3.5 Consensus size: 79
70680997 CCAAATCACC
* * ** * **
70681007 GAAATACCC-CTGGTTTGTAAAATTACCAAAGTACCCCCGGTTTATAAAATTACCAAAATACCGT
1 GAAATACCCTC-GATTTGTAAAATTACCAAA-TACCCTCAATTTACAAAATTACTGAAATACCGT
70681071 TGATTGTAAAATTACT
64 TGATTGTAAAATTACT
* * *
70681087 GAAATACCCTCGATTTGTAAAATTATCGAAATACCCTCAATTTGCAAAATTACTGAAATACCCTT
1 GAAATACCCTCGATTTGTAAAATTA-CCAAATACCCTCAATTTACAAAATTACTGAAATACCGTT
*
70681152 GATTTGCAAAATTACT
65 GA-TTGTAAAATTACT
* ** *
70681168 GAAATACCCTCGACTTGTAAAATTACCAAAGTACCCTCGGTTTATAAAATTACTGAAATACCGTT
1 GAAATACCCTCGATTTGTAAAATTACCAAA-TACCCTCAATTTACAAAATTACTGAAATACCGTT
70681233 GATTGTAAAATTACT
65 GATTGTAAAATTACT
70681248 GAAATACCCTCGATTTGTAAAATTACCAAATACCCT
1 GAAATACCCTCGATTTGTAAAATTACCAAATACCCT
70681284 TGTAGGGTAT
Statistics
Matches: 173, Mismatches: 20, Indels: 9
0.86 0.10 0.04
Matches are distributed among these distances:
79 6 0.03
80 95 0.55
81 72 0.42
ACGTcount: A:0.38, C:0.20, G:0.11, T:0.31
Consensus pattern (79 bp):
GAAATACCCTCGATTTGTAAAATTACCAAATACCCTCAATTTACAAAATTACTGAAATACCGTTG
ATTGTAAAATTACT
Found at i:70681314 original size:27 final size:27
Alignment explanation
Indices: 70681268--70681515 Score: 329
Period size: 27 Copynumber: 9.3 Consensus size: 27
70681258 CGATTTGTAA
* *
70681268 AATTACC-AAATACCCTTGTAGGGTAT
1 AATTACCGAAATACCCCTGTAGGGTAG
*
70681294 AAATACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
70681321 AATTA-CTAAATAGCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
70681347 AATTACTGAAACACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
70681374 AATTATCGAAATACCCCTGTAGGATAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
70681401 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
70681428 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
70681455 AATTACCGAAATACCTCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * * *
70681482 AATTATCGAGATACCCTTGTGGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
70681509 AATTACC
1 AATTACC
70681516 ATTTTGCCCC
Statistics
Matches: 192, Mismatches: 28, Indels: 3
0.86 0.13 0.01
Matches are distributed among these distances:
26 29 0.15
27 163 0.85
ACGTcount: A:0.34, C:0.19, G:0.21, T:0.26
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:70682201 original size:27 final size:26
Alignment explanation
Indices: 70682157--70682208 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
70682147 CTCGCTGCAA
*
70682157 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
70682184 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
70682209 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:70682299 original size:27 final size:26
Alignment explanation
Indices: 70682247--70682305 Score: 73
Period size: 27 Copynumber: 2.2 Consensus size: 26
70682237 CGACATATAT
*
70682247 ATATCTGTTCTGGTGGCCTAGCCACA
1 ATATCTGTTCTGGTGACCTAGCCACA
* * *
70682273 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGT-TCTGGTGACCTAGCCACA
70682300 ATATCT
1 ATATCT
70682306 AGCAGCCTCG
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.29
27 20 0.71
ACGTcount: A:0.22, C:0.24, G:0.19, T:0.36
Consensus pattern (26 bp):
ATATCTGTTCTGGTGACCTAGCCACA
Found at i:70697226 original size:11 final size:11
Alignment explanation
Indices: 70697210--70697259 Score: 61
Period size: 11 Copynumber: 4.8 Consensus size: 11
70697200 ATATATGAAT
70697210 ATATCATGTGC
1 ATATCATGTGC
*
70697221 ATATCA--TAC
1 ATATCATGTGC
70697230 ATATCATGTGC
1 ATATCATGTGC
70697241 ATATCATGT-C
1 ATATCATGTGC
*
70697251 AAATCATGT
1 ATATCATGT
70697260 ATACCAAAAT
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
9 8 0.24
10 9 0.26
11 17 0.50
ACGTcount: A:0.34, C:0.18, G:0.12, T:0.36
Consensus pattern (11 bp):
ATATCATGTGC
Found at i:70697235 original size:20 final size:20
Alignment explanation
Indices: 70697210--70697247 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
70697200 ATATATGAAT
70697210 ATATCATGTGCATATCATAC
1 ATATCATGTGCATATCATAC
70697230 ATATCATGTGCATATCAT
1 ATATCATGTGCATATCAT
70697248 GTCAAATCAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.34, C:0.18, G:0.11, T:0.37
Consensus pattern (20 bp):
ATATCATGTGCATATCATAC
Found at i:70697345 original size:25 final size:25
Alignment explanation
Indices: 70697296--70697342 Score: 69
Period size: 24 Copynumber: 1.9 Consensus size: 25
70697286 ATAATTAAAC
* *
70697296 CCTAAGGGTATAATGGTCATTTTCA
1 CCTAAGGGTAAAATAGTCATTTTCA
70697321 CCTAAGGG-AAAATAGTCATTTT
1 CCTAAGGGTAAAATAGTCATTTT
70697343 TCATATTATC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 12 0.60
25 8 0.40
ACGTcount: A:0.32, C:0.15, G:0.19, T:0.34
Consensus pattern (25 bp):
CCTAAGGGTAAAATAGTCATTTTCA
Found at i:70706177 original size:21 final size:21
Alignment explanation
Indices: 70706151--70706213 Score: 58
Period size: 20 Copynumber: 3.0 Consensus size: 21
70706141 CATAAAAGAG
70706151 TAAAAAGAGCGAGAAACGGGC
1 TAAAAAGAGCGAGAAACGGGC
* ** *
70706172 TAAAAA-TG-GAGAAAATAGAC
1 TAAAAAGAGCGAG-AAACGGGC
*
70706192 TAAAAAGAACGAGAAACGGGC
1 TAAAAAGAGCGAGAAACGGGC
70706213 T
1 T
70706214 GCAAATGGAG
Statistics
Matches: 30, Mismatches: 9, Indels: 6
0.67 0.20 0.13
Matches are distributed among these distances:
19 3 0.10
20 12 0.40
21 12 0.40
22 3 0.10
ACGTcount: A:0.52, C:0.11, G:0.27, T:0.10
Consensus pattern (21 bp):
TAAAAAGAGCGAGAAACGGGC
Found at i:70706208 original size:41 final size:41
Alignment explanation
Indices: 70706151--70706235 Score: 143
Period size: 41 Copynumber: 2.1 Consensus size: 41
70706141 CATAAAAGAG
*
70706151 TAAAAAGAGCGAGAAACGGGCTAAAAATGGAGAAAATAGAC
1 TAAAAAGAACGAGAAACGGGCTAAAAATGGAGAAAATAGAC
**
70706192 TAAAAAGAACGAGAAACGGGCTGCAAATGGAGAAAATAGAC
1 TAAAAAGAACGAGAAACGGGCTAAAAATGGAGAAAATAGAC
70706233 TAA
1 TAA
70706236 CATGGGAAAT
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
41 41 1.00
ACGTcount: A:0.53, C:0.11, G:0.26, T:0.11
Consensus pattern (41 bp):
TAAAAAGAACGAGAAACGGGCTAAAAATGGAGAAAATAGAC
Found at i:70717852 original size:40 final size:40
Alignment explanation
Indices: 70717798--70717875 Score: 138
Period size: 40 Copynumber: 1.9 Consensus size: 40
70717788 CGGATGTAAC
70717798 AACCAGCACAAATGCCTTCGGGACTTAACCCGGTTATAAT
1 AACCAGCACAAATGCCTTCGGGACTTAACCCGGTTATAAT
* *
70717838 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATA
1 AACCAGCACAAATGCCTTCGGGACTTAACCCGGTTATA
70717876 TTTTTTTTCC
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 36 1.00
ACGTcount: A:0.29, C:0.29, G:0.19, T:0.22
Consensus pattern (40 bp):
AACCAGCACAAATGCCTTCGGGACTTAACCCGGTTATAAT
Found at i:70724013 original size:11 final size:12
Alignment explanation
Indices: 70723997--70724026 Score: 53
Period size: 11 Copynumber: 2.6 Consensus size: 12
70723987 TTTTTATTTT
70723997 TTTATTTTTA-C
1 TTTATTTTTATC
70724008 TTTATTTTTATC
1 TTTATTTTTATC
70724020 TTTATTT
1 TTTATTT
70724027 ATATGTTGAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 10 0.56
12 8 0.44
ACGTcount: A:0.17, C:0.07, G:0.00, T:0.77
Consensus pattern (12 bp):
TTTATTTTTATC
Found at i:70729080 original size:35 final size:35
Alignment explanation
Indices: 70729037--70729138 Score: 132
Period size: 35 Copynumber: 2.9 Consensus size: 35
70729027 CATAAGTATG
* * *
70729037 TACATGTGAGGTCATATTGAGTTTGTATATTCGGC
1 TACATGTGAGGTTATATTGAATTTGTATATTCGAC
* * * * *
70729072 TGCTTGTGAAGTTATATTGAACTTGTATATTCGAT
1 TACATGTGAGGTTATATTGAATTTGTATATTCGAC
70729107 TACATGTGAGGTTATATTGAATTTGTATATTC
1 TACATGTGAGGTTATATTGAATTTGTATATTC
70729139 AGCCATATCG
Statistics
Matches: 55, Mismatches: 12, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
35 55 1.00
ACGTcount: A:0.25, C:0.09, G:0.22, T:0.44
Consensus pattern (35 bp):
TACATGTGAGGTTATATTGAATTTGTATATTCGAC
Found at i:70732069 original size:20 final size:21
Alignment explanation
Indices: 70732031--70732069 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
70732021 CATTCACGGT
*
70732031 AAGTTGGGCCTCAAGGGGCCG
1 AAGTGGGGCCTCAAGGGGCCG
*
70732052 AAGTGGGGCC-CAATGGGC
1 AAGTGGGGCCTCAAGGGGC
70732070 TTTCAGGCCC
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 7 0.44
21 9 0.56
ACGTcount: A:0.21, C:0.23, G:0.44, T:0.13
Consensus pattern (21 bp):
AAGTGGGGCCTCAAGGGGCCG
Found at i:70732368 original size:25 final size:25
Alignment explanation
Indices: 70732339--70732386 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
70732329 TTATAACATG
* * *
70732339 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
70732364 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
70732387 GTTTATATAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:70732489 original size:20 final size:20
Alignment explanation
Indices: 70732423--70732489 Score: 107
Period size: 20 Copynumber: 3.4 Consensus size: 20
70732413 ATTTTGATAA
* *
70732423 ACATGGTATGTATGATATAC
1 ACATGATATGTATGATATGC
*
70732443 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
70732463 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
70732483 ACATGAT
1 ACATGAT
70732490 GTATTCATAA
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 43 1.00
ACGTcount: A:0.36, C:0.12, G:0.19, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:70732565 original size:24 final size:24
Alignment explanation
Indices: 70732538--70732730 Score: 273
Period size: 24 Copynumber: 8.0 Consensus size: 24
70732528 GGGGGAAGTG
70732538 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
70732562 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
*
70732586 CAAAAGGGCTTATGCCTCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
*
70732610 AAAAAGGGCTTATGCCCCAGTTA-
1 CAAAAGGGCTTATGCCCCAGTTAT
70732633 CTAAAAGGGCTTATGCCCCAGTTAT
1 C-AAAAGGGCTTATGCCCCAGTTAT
* *
70732658 TAAAAGGGTTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
* *
70732682 TAAAAGGGCTTTTGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
* *
70732706 TAAAAGAGGC-TAGGCCTCCAGTTAT
1 CAAAAG-GGCTTATGCC-CCAGTTAT
70732731 ATGATAAAGC
Statistics
Matches: 155, Mismatches: 10, Indels: 7
0.90 0.06 0.04
Matches are distributed among these distances:
24 144 0.93
25 11 0.07
ACGTcount: A:0.30, C:0.22, G:0.21, T:0.27
Consensus pattern (24 bp):
CAAAAGGGCTTATGCCCCAGTTAT
Found at i:70733226 original size:9 final size:9
Alignment explanation
Indices: 70733208--70733245 Score: 69
Period size: 9 Copynumber: 4.3 Consensus size: 9
70733198 TTAATTATTA
70733208 TTTA-TTCT
1 TTTACTTCT
70733216 TTTACTTCT
1 TTTACTTCT
70733225 TTTACTTCT
1 TTTACTTCT
70733234 TTTACTTCT
1 TTTACTTCT
70733243 TTT
1 TTT
70733246 CGGGATTATT
Statistics
Matches: 29, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
8 4 0.14
9 25 0.86
ACGTcount: A:0.11, C:0.18, G:0.00, T:0.71
Consensus pattern (9 bp):
TTTACTTCT
Found at i:70740712 original size:25 final size:25
Alignment explanation
Indices: 70740683--70740730 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
70740673 TTATAACATG
* * *
70740683 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
70740708 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
70740731 GTTTATATAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:70740814 original size:11 final size:11
Alignment explanation
Indices: 70740778--70740833 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
70740768 CATGGTATGT
70740778 ATGATATGCAC
1 ATGATATGCAC
* *
70740789 ATGACATG--T
1 ATGATATGCAC
70740798 ATGATATGCAC
1 ATGATATGCAC
*
70740809 ATGATATG--T
1 ATGATATGCAC
70740818 ATGATATGCAC
1 ATGATATGCAC
70740829 ATGAT
1 ATGAT
70740834 GTATTCATAA
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:70740833 original size:20 final size:20
Alignment explanation
Indices: 70740767--70740833 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
70740757 ATTTTGATAA
*
70740767 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
*
70740787 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
70740807 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
70740827 ACATGAT
1 ACATGAT
70740834 GTATTCATAA
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.34, C:0.12, G:0.21, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:70740909 original size:24 final size:24
Alignment explanation
Indices: 70740882--70741050 Score: 234
Period size: 24 Copynumber: 7.0 Consensus size: 24
70740872 GGAGGAAGTG
70740882 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
70740906 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
* *
70740930 AAAAAGAGCTTATGCCCCAGTTA-
1 CAAAAGGGCTTATGCCCCAGTTAT
70740953 CTAAAAGGGCTTATGCCCCAGTTAT
1 C-AAAAGGGCTTATGCCCCAGTTAT
*
70740978 TAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
* *
70741002 TAAAAGGGCTTTTGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
* *
70741026 TAAAAGAGGC-TAGGCCTCCAGTTAT
1 CAAAAG-GGCTTATGCC-CCAGTTAT
70741051 ATGATAAAGT
Statistics
Matches: 133, Mismatches: 8, Indels: 7
0.90 0.05 0.05
Matches are distributed among these distances:
24 122 0.92
25 11 0.08
ACGTcount: A:0.30, C:0.22, G:0.21, T:0.27
Consensus pattern (24 bp):
CAAAAGGGCTTATGCCCCAGTTAT
Found at i:70742978 original size:43 final size:42
Alignment explanation
Indices: 70742925--70743072 Score: 161
Period size: 43 Copynumber: 3.5 Consensus size: 42
70742915 TATCCCAAAT
* * * *
70742925 ATGGTCTTACATGTTATCACATATCGACGCCACTGTCCCAGAC
1 ATGGTCTTACACGTAATCA-ATATCGATGCCAATGTCCCAGAC
* * *
70742968 AGGGTCTTACACGAAATCGAATAACGATGCCAATGTCCCAGAC
1 ATGGTCTTACACGTAATC-AATATCGATGCCAATGTCCCAGAC
* * *
70743011 ATGGTCTTACACGTATTCAAAATGCAATGCCAATGTCCCAGAC
1 ATGGTCTTACACGTAATCAATAT-CGATGCCAATGTCCCAGAC
* *
70743054 ATGGTATTACATGTAATCA
1 ATGGTCTTACACGTAATCA
70743073 CATTTCGGTA
Statistics
Matches: 87, Mismatches: 16, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
42 3 0.03
43 83 0.95
44 1 0.01
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.26
Consensus pattern (42 bp):
ATGGTCTTACACGTAATCAATATCGATGCCAATGTCCCAGAC
Found at i:70744666 original size:93 final size:93
Alignment explanation
Indices: 70744554--70744726 Score: 292
Period size: 93 Copynumber: 1.9 Consensus size: 93
70744544 CGCCCATAAG
* * *
70744554 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCACATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACGCTCACATCCATAAGTGAACTCGAACTCAACTCA
70744619 ACGAGCTCGGATGCCTAGTTACATCTCA
66 ACGAGCTCGGATGCCTAGTTACATCTCA
* *
70744647 CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGAACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACGCTCACATCCATAAGTGAACTCGAACTCAACTCA
*
70744712 ACGAGTTCGGATGCC
66 ACGAGCTCGGATGCC
70744727 CAAATATCCC
Statistics
Matches: 74, Mismatches: 6, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.28, C:0.31, G:0.21, T:0.20
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACGCTCACATCCATAAGTGAACTCGAACTCAACTCA
ACGAGCTCGGATGCCTAGTTACATCTCA
Found at i:70744670 original size:47 final size:47
Alignment explanation
Indices: 70744547--70744722 Score: 202
Period size: 46 Copynumber: 3.8 Consensus size: 47
70744537 TGTAACCCGC
70744547 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGG-GCGTTCACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGAGCGTTCACAT
*
70744593 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGA-G-C--GTTCACAT
* * * *
70744643 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGA-CGCTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGAGCGTTCACAT
* * *
70744686 CCATAAGTGAACTCGAACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGA
70744723 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 2 0.02
46 63 0.56
47 28 0.25
48 3 0.03
49 2 0.02
50 4 0.04
51 3 0.03
ACGTcount: A:0.30, C:0.31, G:0.20, T:0.19
Consensus pattern (47 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGAGCGTTCACAT
Found at i:70744741 original size:46 final size:45
Alignment explanation
Indices: 70744555--70744741 Score: 137
Period size: 46 Copynumber: 4.0 Consensus size: 45
70744545 GCCCATAAGC
* ** ** *
70744555 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTC-ACATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCCAACATCC--CAGT
* * * *
70744601 GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCA-C
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCCA---ACATCCCAGT
* * * *
70744648 GAACTCGGACTCAACTCAACGAGTTCGGACGCTC-GCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCCAACATCC--CAGT
* *
70744694 GAACTCGAACTCAACTCAACGAGTTCGGATGCCCAAATATCCCAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCC-AACATCCCAGT
70744740 GA
1 GA
70744742 CATGTCACTT
Statistics
Matches: 110, Mismatches: 22, Indels: 18
0.73 0.15 0.12
Matches are distributed among these distances:
43 4 0.04
45 1 0.01
46 65 0.59
47 30 0.27
48 5 0.05
50 5 0.05
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.20
Consensus pattern (45 bp):
GAACTCGGACTCAACTCAACGAGTTCGGATGCCCAACATCCCAGT
Found at i:70747447 original size:46 final size:46
Alignment explanation
Indices: 70747395--70747495 Score: 157
Period size: 46 Copynumber: 2.2 Consensus size: 46
70747385 AACCAATCTA
* *
70747395 ATTCACAATTCAAACACATAGGCCCAATTCTAATTTCAACAACCAC
1 ATTCACAATTCAAACACATAGACCCAATTCCAATTTCAACAACCAC
* * *
70747441 ATTCACAATTCAAACACATATACTCAATTCCAATTTGAACAACCAC
1 ATTCACAATTCAAACACATAGACCCAATTCCAATTTCAACAACCAC
70747487 ATTCACAAT
1 ATTCACAAT
70747496 AACTTTTTTC
Statistics
Matches: 50, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
46 50 1.00
ACGTcount: A:0.43, C:0.29, G:0.03, T:0.26
Consensus pattern (46 bp):
ATTCACAATTCAAACACATAGACCCAATTCCAATTTCAACAACCAC
Found at i:70764792 original size:40 final size:40
Alignment explanation
Indices: 70764708--70764891 Score: 205
Period size: 40 Copynumber: 4.6 Consensus size: 40
70764698 TTGAATGCTG
* * * *
70764708 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTATTAAT
**
70764747 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTATTAAT
1 -TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTATTAAT
* * *
70764788 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTAAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
* *
70764828 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATT-AAT
70764868 TCCGGGTTAAGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
70764892 GTATGAGTTA
Statistics
Matches: 125, Mismatches: 14, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
39 2 0.02
40 113 0.90
41 10 0.08
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
Found at i:70764845 original size:80 final size:81
Alignment explanation
Indices: 70764708--70764888 Score: 230
Period size: 80 Copynumber: 2.3 Consensus size: 81
70764698 TTGAATGCTG
* *
70764708 TCCGGGCTAAGTCCCGAAGG-CTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
* *
70764772 TGTGCGAGTTATT-AAT
66 CGTGCGAGTT-TTAAAA
**
70764788 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCG-AGAT-ACTA-ATTCCGGGTTAAG-TCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAG-TGACTATA-TCCGGACTAAGAT-CCGAAGGC
70764849 ATTCGTGCGAGTTTTAAAA
63 ATTCGTGCGAGTTTTAAAA
70764868 TCCGGGTTAAGTCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGC
70764889 ATTGTATGAG
Statistics
Matches: 90, Mismatches: 6, Indels: 10
0.85 0.06 0.09
Matches are distributed among these distances:
79 4 0.04
80 77 0.86
81 9 0.10
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.27
Consensus pattern (81 bp):
TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTTTTAAAA
Found at i:70773921 original size:37 final size:37
Alignment explanation
Indices: 70773871--70773949 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
70773861 TTATTACGAA
* * *
70773871 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
70773908 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
70773945 GTCTT
1 GTCTT
70773950 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:70774144 original size:49 final size:48
Alignment explanation
Indices: 70774067--70774224 Score: 273
Period size: 49 Copynumber: 3.2 Consensus size: 48
70774057 GCCCTTCGGG
70774067 ACTTATCACATTCATCACATCGGCCATTAGGCCCTATCACATATATACAC
1 ACTT-TCACATTCATCACATCGGCCATTAGGCCCTATCACATATATA-AC
70774117 ACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATA-AC
*
70774166 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT-AC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATAAC
70774213 ACTTTCACATTC
1 ACTTTCACATTC
70774225 TCAAAGTAAG
Statistics
Matches: 106, Mismatches: 2, Indels: 3
0.95 0.02 0.03
Matches are distributed among these distances:
47 14 0.13
49 88 0.83
50 4 0.04
ACGTcount: A:0.30, C:0.31, G:0.08, T:0.31
Consensus pattern (48 bp):
ACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATAAC
Found at i:70774543 original size:24 final size:23
Alignment explanation
Indices: 70774495--70774552 Score: 66
Period size: 24 Copynumber: 2.5 Consensus size: 23
70774485 TAATCAAACA
70774495 TTATTATATATATATCATATCATT
1 TTATTAT-TATATATCATATCATT
*
70774519 TTATTATTAT-TATCATTATTTATT
1 TTATTATTATATATCA-TA-TCATT
70774543 TTATT-TTATA
1 TTATTATTATA
70774553 CTTTTCAACT
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
22 5 0.17
23 9 0.30
24 16 0.53
ACGTcount: A:0.33, C:0.05, G:0.00, T:0.62
Consensus pattern (23 bp):
TTATTATTATATATCATATCATT
Found at i:70777738 original size:40 final size:40
Alignment explanation
Indices: 70777708--70778085 Score: 411
Period size: 40 Copynumber: 9.4 Consensus size: 40
70777698 AGCATGATTA
* * * * *
70777708 CTCTTCGGAACCTAGCCCGGATATAACACCAGCACAAATG
1 CTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAATG
* *** * *
70777748 CTCTTTGGGGTTTAGCACGGATATATCACTAGCACGAATG
1 CTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAATG
*
70777788 CTCTTCGGAACTTAGCCCAGATACATCACTAGCACGAATG
1 CTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAATG
70777828 CTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAATG
1 CTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAATG
* * *
70777868 CTCTTTGGAACTTAGCCCGGATACATTACTAGCATGAATG
1 CTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAATG
* ** *
70777908 CTCTTCGGGACTTAGCCCGGATACATTGCTAGCATGAATG
1 CTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAATG
*
70777948 CTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAATG
1 CTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAATG
* * ** * * *
70777988 CTCTTCGGGACTTAGCCTGGATTTAGTAACTCGCACCAATG
1 CTCTTCGGAACTTAGCCCGGATACA-TCACTAGCACGAATG
* * ** *
70778029 C-CTTCGGATCTTAGTCCGGATATGGTCACTTAGCAC-AAAG
1 CTCTTCGGAACTTAGCCCGGATA-CATCAC-TAGCACGAATG
*
70778069 C-CTTCGGGACTTAGCCC
1 CTCTTCGGAACTTAGCCC
70778086 AGACATCATT
Statistics
Matches: 288, Mismatches: 47, Indels: 6
0.84 0.14 0.02
Matches are distributed among these distances:
40 271 0.94
41 17 0.06
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (40 bp):
CTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAATG
Found at i:70778431 original size:29 final size:29
Alignment explanation
Indices: 70778392--70778470 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
70778382 CTTAATAATC
*
70778392 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
70778422 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
70778451 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
70778471 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:70780950 original size:40 final size:40
Alignment explanation
Indices: 70780713--70780936 Score: 251
Period size: 40 Copynumber: 5.6 Consensus size: 40
70780703 TGAATGATGT
* * * * *
70780713 CCGGGGTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* *
70780753 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
*
70780793 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
70780831 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
* * * *
70780872 CCGGACAAAGTCCCGAAGGCATTTGTGTGAGTCACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
70780912 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
70780937 AACGAGTAGC
Statistics
Matches: 159, Mismatches: 18, Indels: 14
0.83 0.09 0.07
Matches are distributed among these distances:
39 35 0.22
40 114 0.72
41 10 0.06
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:70780958 original size:119 final size:119
Alignment explanation
Indices: 70780712--70780969 Score: 292
Period size: 119 Copynumber: 2.2 Consensus size: 119
70780702 TTGAATGATG
* * *
70780712 TCCGGGGTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATAACCGGACAAAGATCCGAAGGCATTT
* * **
70780777 GTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAA
66 GTGCGAGTCACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAAA
* * *
70780831 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAACCGGACAAAG-TCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAACCGGACAAAGAT-CCGAAGGCAT
* * * *
70780894 TTGTGTGAGTCACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATA
64 TTGTGCGAGTCACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-CTAAA
* *
70780951 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
70780970 TACGTGATTT
Statistics
Matches: 118, Mismatches: 16, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
118 3 0.03
119 84 0.71
120 31 0.26
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (119 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATAACCGGACAAAGATCCGAAGGCATTT
GTGCGAGTCACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAAA
Found at i:70783759 original size:37 final size:37
Alignment explanation
Indices: 70783709--70783787 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
70783699 TTATTACGAA
* *
70783709 GTCTTACCCGGACATAA-TCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATTC-CCACACGAAGTCATCGG
*
70783746 GTCTTACCCGGACAAAATTCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
70783783 GTCTT
1 GTCTT
70783788 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 36 0.95
38 2 0.05
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
Found at i:70783982 original size:49 final size:47
Alignment explanation
Indices: 70783905--70784013 Score: 182
Period size: 49 Copynumber: 2.3 Consensus size: 47
70783895 GCCCTTCGGG
70783905 ACTTATCACATTCATCACATCGGCCATTAGGCCCTATCACATATATACAC
1 ACTT-TCACATTCATCACATCGGCCATTAGGCCCTATCACATATAT--AC
*
70783955 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATAC
70784002 ACTTTCACATTC
1 ACTTTCACATTC
70784014 TCAAAGTAAG
Statistics
Matches: 58, Mismatches: 1, Indels: 3
0.94 0.02 0.05
Matches are distributed among these distances:
47 14 0.24
49 40 0.69
50 4 0.07
ACGTcount: A:0.30, C:0.31, G:0.07, T:0.31
Consensus pattern (47 bp):
ACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATAC
Found at i:70784332 original size:24 final size:23
Alignment explanation
Indices: 70784284--70784341 Score: 66
Period size: 24 Copynumber: 2.5 Consensus size: 23
70784274 TAATCAAACA
70784284 TTATTATATATATATCATATCATT
1 TTATTAT-TATATATCATATCATT
*
70784308 TTATTATTAT-TATCATTATTTATT
1 TTATTATTATATATCA-TA-TCATT
70784332 TTATT-TTATA
1 TTATTATTATA
70784342 CTTTTCAACT
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
22 5 0.17
23 9 0.30
24 16 0.53
ACGTcount: A:0.33, C:0.05, G:0.00, T:0.62
Consensus pattern (23 bp):
TTATTATTATATATCATATCATT
Found at i:70794913 original size:31 final size:31
Alignment explanation
Indices: 70794864--70794949 Score: 138
Period size: 31 Copynumber: 2.8 Consensus size: 31
70794854 TCAATCTCAG
70794864 CATAT-ACTGGGCCGAAGCCTTTACATTATT
1 CATATCACTGGGCCGAAGCCTTTACATTATT
* * *
70794894 CATATCACTAGGCCAAAGCCTTTTCATTATT
1 CATATCACTGGGCCGAAGCCTTTACATTATT
70794925 CATATCACTGGGCCGAAGCCTTTAC
1 CATATCACTGGGCCGAAGCCTTTAC
70794950 TGTAACAATA
Statistics
Matches: 49, Mismatches: 6, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
30 5 0.10
31 44 0.90
ACGTcount: A:0.27, C:0.27, G:0.15, T:0.31
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTACATTATT
Found at i:70795382 original size:25 final size:25
Alignment explanation
Indices: 70795345--70795392 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
70795335 ACAATTAAAC
* **
70795345 CCTAGGGGTAAAATGGTCATTTTTA
1 CCTAGGGGCAAAACAGTCATTTTTA
70795370 CCTAGGGGCAAAACAGTCATTTT
1 CCTAGGGGCAAAACAGTCATTTT
70795393 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.29, C:0.17, G:0.23, T:0.31
Consensus pattern (25 bp):
CCTAGGGGCAAAACAGTCATTTTTA
Found at i:70797651 original size:40 final size:39
Alignment explanation
Indices: 70797589--70797844 Score: 318
Period size: 40 Copynumber: 6.4 Consensus size: 39
70797579 CAACCAAGTA
* * *
70797589 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGA-ATAG-TAACTCGCACAAATG
**
70797628 CCTTCGGGACTTAGCCCGGATATAGTAGTTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGA-ATAGTAACTCGCACAAATG
70797668 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGA-ATAGTAACTCGCACAAATG
*
70797708 CCTTCGGGACTTAGCCCGGAATTCGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGAA-TAGTAACTCGCACAAATG
** * *
70797748 CCTTCTTGACTTAGCCCGGAATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGAA-TAGTAACTCGCACAAATG
** *
70797788 CCTTCGGGACTTAGCCCGGAATTAGTCGCTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGAA-TAGTAACTCGCACAAATG
70797828 CCTTCGGGACTTAGCCC
1 CCTTCGGGACTTAGCCC
70797845 CGTTATCATC
Statistics
Matches: 198, Mismatches: 16, Indels: 5
0.90 0.07 0.02
Matches are distributed among these distances:
39 14 0.07
40 184 0.93
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (39 bp):
CCTTCGGGACTTAGCCCGGAATAGTAACTCGCACAAATG
Found at i:70802477 original size:27 final size:26
Alignment explanation
Indices: 70802446--70802738 Score: 271
Period size: 27 Copynumber: 10.9 Consensus size: 26
70802436 TTAGTTTACC
* *
70802446 AAATTACCAAAATACCCTCGATTAGGA
1 AAATTACCAAAATACCC-CGATTTGTA
* *
70802473 AAATTACCAAAATACCCTCGATTAGCA
1 AAATTACCAAAATACCC-CGATTTGTA
*
70802500 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCC-GATTTGTA
*
70802527 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCC-GATTTGTA
* *
70802554 AACTTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCC-GATTTGTA
*
70802581 AAATTACCAAAATACCCCTAATTTGTA
1 AAATTACCAAAATACCCC-GATTTGTA
* * * *
70802608 AAATTATCGAAATACGCCTGATTTGCA
1 AAATTACCAAAATAC-CCCGATTTGTA
* * * * *
70802635 CAATTACCGAAATATCTCTGATTTGAA
1 AAATTACCAAAATA-CCCCGATTTGTA
**
70802662 AAATTACTGAAATACCCCGATTTGTA
1 AAATTACCAAAATACCCCGATTTGTA
* * * *
70802688 AAATTACTAAAATACCTTCAACTTGTA
1 AAATTACCAAAATACC-CCGATTTGTA
*
70802715 AAATTACCAAAGTACCCCCGATTT
1 AAATTACCAAAATA-CCCCGATTT
70802739 ACAGAATTAC
Statistics
Matches: 230, Mismatches: 31, Indels: 10
0.85 0.11 0.04
Matches are distributed among these distances:
26 25 0.11
27 200 0.87
28 5 0.02
ACGTcount: A:0.40, C:0.22, G:0.10, T:0.29
Consensus pattern (26 bp):
AAATTACCAAAATACCCCGATTTGTA
Found at i:70802764 original size:107 final size:108
Alignment explanation
Indices: 70802440--70802787 Score: 264
Period size: 108 Copynumber: 3.2 Consensus size: 108
70802430 AATACTTTAG
* * * * * *
70802440 TTTACCAAATTACCAAAATA-CCCTCGATTAGGAAAATTACCAAAATA-CCCTCGA-TTAGCAAA
1 TTTACAAAATTACCGAAATACCCCT-GATTTGTAAAATTACCAAAATACCCCT-AACTT-GTAAA
* * ** * * * *
70802502 ATTA-CCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTGG
63 ATTATCC-AAATACCCCCGATTTACACAATTACCGAAATACCTCTGA
** * * * *
70802548 TTTGTAAACTTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTAATTTGTAAAATT
1 TTTACAAAATTACCGAAATACCCCTGATTTGTAAAATTACCAAAATACCCCTAACTTGTAAAATT
* * * * *
70802613 ATCGAAATACGCCTGATTTGCACAATTACCGAAATATCTCTGA
66 ATCCAAATACCCCCGATTTACACAATTACCGAAATACCTCTGA
* * *
70802656 TTTGA-AAAATTACTGAAATACCCC-GATTTGTAAAATTACTAAAATA-CCTTCAACTTGTAAAA
1 TTT-ACAAAATTACCGAAATACCCCTGATTTGTAAAATTACCAAAATACCCCT-AACTTGTAAAA
* ** *
70802718 TTA-CCAAAGTACCCCCGATTTACAGAATTACC-ATTTTACCTTTGA
64 TTATCCAAA-TACCCCCGATTTACACAATTACCGA-AATACCTCTGA
*
70802763 TTTACAAAATTACCGAAACACCCCT
1 TTTACAAAATTACCGAAATACCCCT
70802788 ATAGGGTAGA
Statistics
Matches: 193, Mismatches: 37, Indels: 20
0.77 0.15 0.08
Matches are distributed among these distances:
106 9 0.05
107 79 0.41
108 94 0.49
109 11 0.06
ACGTcount: A:0.39, C:0.23, G:0.09, T:0.29
Consensus pattern (108 bp):
TTTACAAAATTACCGAAATACCCCTGATTTGTAAAATTACCAAAATACCCCTAACTTGTAAAATT
ATCCAAATACCCCCGATTTACACAATTACCGAAATACCTCTGA
Found at i:70802800 original size:27 final size:27
Alignment explanation
Indices: 70802770--70803366 Score: 749
Period size: 27 Copynumber: 22.2 Consensus size: 27
70802760 TGATTTACAA
* * *
70802770 AATTACCGAAACACCCCTATAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
*
70802797 AATTA-TCGAAATACCCTTGTAGGGTAG
1 AATTACT-GAAATACCCCTGTAGGGTAG
* *
70802824 AACTACTGAAATACCCTTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
**
70802851 AATTACCAAAATA-CCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
*
70802877 AATTACTGAAATACCCCT-AAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
70802903 AATTA-TCGAAATACCCCTGTAGGGTAG
1 AATTACT-GAAATACCCCTGTAGGGTAG
*
70802930 AATTACTGAAATACCCTTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
**
70802957 AATTA-TCGAAATACCATTGTAGGGTAG
1 AATTACT-GAAATACCCCTGTAGGGTAG
* *
70802984 AAATACTGAAATACCCCTATAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* **
70803011 AATTATTGAAATACCTTTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
*
70803038 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
70803065 AATTACTAAAATACCCTTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* * * *
70803092 AATTACTAAAATAACCTTGTAAGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
70803119 AAATACCGAAATA-CCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* * *
70803145 AATTACCGAAATACCCTTGTAGGATAG
1 AATTACTGAAATACCCCTGTAGGGTAG
*
70803172 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
**
70803199 AATTACTGAAATACCATTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
70803226 AAATACTGAAATACCCCTATAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
*
70803253 AATTACTGAAATACCCCTGTAAGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
*
70803280 AATTACTGAAATACCCCTGTAAGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
70803307 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* * * *
70803334 AATTAGC-GAGATACCCTTGTGGGGTAA
1 AATTA-CTGAAATACCCCTGTAGGGTAG
70803361 AATTAC
1 AATTAC
70803367 CATTTTTCCT
Statistics
Matches: 502, Mismatches: 58, Indels: 21
0.86 0.10 0.04
Matches are distributed among these distances:
25 1 0.00
26 71 0.14
27 426 0.85
28 4 0.01
ACGTcount: A:0.36, C:0.17, G:0.21, T:0.26
Consensus pattern (27 bp):
AATTACTGAAATACCCCTGTAGGGTAG
Done.